Citrus Sinensis ID: 008183
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 575 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SMZ2 | 990 | Pentatricopeptide repeat- | yes | no | 0.961 | 0.558 | 0.356 | 1e-102 | |
| Q9SHZ8 | 786 | Pentatricopeptide repeat- | no | no | 0.940 | 0.688 | 0.354 | 1e-100 | |
| Q9CAA8 | 743 | Putative pentatricopeptid | no | no | 0.933 | 0.722 | 0.343 | 1e-100 | |
| Q9SI53 | 630 | Pentatricopeptide repeat- | no | no | 0.921 | 0.841 | 0.360 | 1e-97 | |
| Q9LIQ7 | 633 | Pentatricopeptide repeat- | no | no | 0.956 | 0.868 | 0.354 | 2e-97 | |
| Q8LK93 | 603 | Pentatricopeptide repeat- | no | no | 0.96 | 0.915 | 0.352 | 1e-96 | |
| Q9LYV3 | 822 | Putative pentatricopeptid | no | no | 0.961 | 0.672 | 0.341 | 9e-96 | |
| Q9LFL5 | 850 | Pentatricopeptide repeat- | no | no | 0.946 | 0.64 | 0.337 | 1e-95 | |
| Q9ZUW3 | 868 | Pentatricopeptide repeat- | no | no | 0.928 | 0.615 | 0.352 | 2e-95 | |
| Q9LW63 | 715 | Putative pentatricopeptid | no | no | 0.902 | 0.725 | 0.331 | 2e-95 |
| >sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 374 bits (959), Expect = e-102, Method: Compositional matrix adjust.
Identities = 204/573 (35%), Positives = 333/573 (58%), Gaps = 20/573 (3%)
Query: 11 PQNTSTDPRIVHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTA 69
P+ S + VH A+K ++ +D + LI YS++ + + LF + ++V+W A
Sbjct: 430 PEGLSLSKQ-VHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFER-HNFDLVAWNA 487
Query: 70 LISAHSNSP---LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLF----GLSL 122
+++ ++ S +L +F M + S + TLA++FKTC FLF G +
Sbjct: 488 MMAGYTQSHDGHKTLKLFALMHKQGERS---DDFTLATVFKTCG-----FLFAINQGKQV 539
Query: 123 HSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRL 182
H+ ++K + S ++ Y + A+ FD I D V + MI G +N
Sbjct: 540 HAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEE 599
Query: 183 VDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGL 242
+ VF+ MR V + ++ +A++ L A+EQ R IH +A+ + VGT L
Sbjct: 600 ERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSL 659
Query: 243 IDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPD 302
+D Y K G + DA +F + + ++N AWNAM+ G AQ G+ L+LF ++ G PD
Sbjct: 660 VDMYAKCGSIDDAYCLF-KRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPD 718
Query: 303 EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIA 362
+ +F+ VL+A ++GL E+ K + M Y ++P +EHY+CL A+GRAG ++ AE +
Sbjct: 719 KVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLI 778
Query: 363 MAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWD 422
+M E A+++R LL+ + G + ++ +L+++ P D SAYV+++N+ + +WD
Sbjct: 779 ESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWD 838
Query: 423 EVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLG 482
E+ R +MK +V+K+ G SWIEVK K+H+F+ DR + +TE IY K+ +++ + ++ G
Sbjct: 839 EMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEG 898
Query: 483 YVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESF 542
YVP D L +V + EK AL+YHSEKLA+AFGL+S P +R++KNLR+C DCH +
Sbjct: 899 YVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLS-TPPSTPIRVIKNLRVCGDCHNAM 957
Query: 543 KYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
KYI++V REIV+RD NR+HRF +G C+CGD W
Sbjct: 958 KYIAKVYNREIVLRDANRFHRFKDGICSCGDYW 990
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 366 bits (940), Expect = e-100, Method: Compositional matrix adjust.
Identities = 205/579 (35%), Positives = 314/579 (54%), Gaps = 38/579 (6%)
Query: 32 DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSML 88
D S +N +I + + + ++ F + +IV+W ++IS + +L+IF ML
Sbjct: 211 DISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKML 270
Query: 89 RHPTLSFLPNQRTLASLFKTCASL----------SHAFLFGLSLHSLSLKLSLHDKPFCG 138
R LS P++ TLAS+ CA+L SH G + + L + CG
Sbjct: 271 RDSLLS--PDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCG 328
Query: 139 ----------------------SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGF 176
+AL+ Y + + AK +F +++RDVV + AMIVG+
Sbjct: 329 GVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGY 388
Query: 177 AQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNV 236
Q+ +++++F M Y ++ L A+ LA++ + IHG AV SG +V
Sbjct: 389 EQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSV 448
Query: 237 IVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEM 296
V LI Y KAG ++ A R FD ++++W +M+ AQ G LELF + M
Sbjct: 449 SVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLM 508
Query: 297 RGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLE 356
G PD +++ V +A +AGL + ++ + MK K+ P L HY C++ GRAG L+
Sbjct: 509 EGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQ 568
Query: 357 DAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLS 416
+A+ MP EPD W +LLS +H D+ +RL+ + P + AY +AN+ S
Sbjct: 569 EAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYS 628
Query: 417 GVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELME 476
G+W+E A++RK MKD RV+KE G SWIEVK KVHVF D H +IY + ++ +
Sbjct: 629 ACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWD 688
Query: 477 ECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICR 536
E +++GYVP +LH++ + K + L +HSEKLA+AFGL+S P TLRI+KNLR+C
Sbjct: 689 EIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLIS-TPDKTTLRIMKNLRVCN 747
Query: 537 DCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
DCH + K+IS++V REI+VRD R+H F +G C+C D W
Sbjct: 748 DCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 365 bits (937), Expect = e-100, Method: Compositional matrix adjust.
Identities = 186/541 (34%), Positives = 307/541 (56%), Gaps = 4/541 (0%)
Query: 35 IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLS 94
+YN+L+ ++ +L+LF + + VSW A+I + + L+
Sbjct: 207 MYNSLMGGLLACGMIEDALQLFRGMEKDS-VSWAAMIKGLAQNGLAKEAIECFREMKVQG 265
Query: 95 FLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNA 154
+Q S+ C L A G +H+ ++ + D + GSAL+ Y + + A
Sbjct: 266 LKMDQYPFGSVLPACGGLG-AINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYA 324
Query: 155 KKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAEL 214
K VFD +++++VV + AM+VG+ Q R +++ +F DM+ S + Y + A+ A A +
Sbjct: 325 KTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANV 384
Query: 215 AAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAM 274
+++E+ HG A+ SGL V V L+ YGK G + D+ R+F+E ++V ++++W AM
Sbjct: 385 SSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNE-MNVRDAVSWTAM 443
Query: 275 MAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYK 334
++ YAQ G ++LF + G PD + V++A AGL + +++ + M Y
Sbjct: 444 VSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYG 503
Query: 335 LEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMG 394
+ P + HY+C+I R+GRLE+A R MPF PDA W LLS G ++
Sbjct: 504 IVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIGKWAA 563
Query: 395 KRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVF 454
+ LI+++P+ + Y +++++ + G+WD VA++R+ M+++ V+KE G+SWI+ KGK+H F
Sbjct: 564 ESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKGKLHSF 623
Query: 455 LAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAF 514
A D + IY KL EL + GY P + H+V + K + L YHSE+LA+AF
Sbjct: 624 SADDESSPYLDQIYAKLEELNNKIIDNGYKPDTSFVHHDVEEAVKVKMLNYHSERLAIAF 683
Query: 515 GLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDL 574
GL+ P G+ +R+ KNLR+C DCH + K+IS V REI+VRD R+HRF +G+C+CGD
Sbjct: 684 GLIF-VPSGQPIRVGKNLRVCVDCHNATKHISSVTGREILVRDAVRFHRFKDGTCSCGDF 742
Query: 575 W 575
W
Sbjct: 743 W 743
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 357 bits (916), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 196/544 (36%), Positives = 309/544 (56%), Gaps = 14/544 (2%)
Query: 35 IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHP 91
+ N LI Y K NLL+ + +LF+ +P N++SWT +ISA+S + +L + + MLR
Sbjct: 98 LVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRD- 156
Query: 92 TLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP 151
+ PN T +S+ ++C +S + LH +K L F SAL+ +++ P
Sbjct: 157 --NVRPNVYTYSSVLRSCNGMSDVRM----LHCGIIKEGLESDVFVRSALIDVFAKLGEP 210
Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211
++A VFDE+ D + + ++I GFAQNSR +L +F M+ + + ++ LRA
Sbjct: 211 EDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRAC 270
Query: 212 AELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW 271
LA +E H H V D+++I+ L+D Y K G + DA RVF++ + + I W
Sbjct: 271 TGLALLELGMQAHVHIV--KYDQDLILNNALVDMYCKCGSLEDALRVFNQ-MKERDVITW 327
Query: 272 NAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV 331
+ M++G AQ G L+LF ++ G P+ + + VL A +AGL + + MK
Sbjct: 328 STMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKK 387
Query: 332 RYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMAS 391
Y ++P EHY C+I +G+AG+L+DA ++ M EPDA WR LL + +A
Sbjct: 388 LYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAE 447
Query: 392 KMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKV 451
K++I ++P D Y +++N+ + +WD V E+R M+DR ++KE G SWIEV ++
Sbjct: 448 YAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQI 507
Query: 452 HVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLA 511
H F+ GD H + ++ KL +L+ +GYVP + +L ++ + ++L +HSEKLA
Sbjct: 508 HAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLA 567
Query: 512 LAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTC 571
LAFGL++ P K +RI KNLRIC DCH K S++ R IV+RD RYH F +G C+C
Sbjct: 568 LAFGLMT-LPIEKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRDPIRYHHFQDGKCSC 626
Query: 572 GDLW 575
GD W
Sbjct: 627 GDYW 630
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 357 bits (916), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 199/561 (35%), Positives = 314/561 (55%), Gaps = 11/561 (1%)
Query: 19 RIVHARALKS-SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS-- 75
RIVHA L+S + D + N L+ Y+K L + ++F +P + V+WT LIS +S
Sbjct: 80 RIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQH 139
Query: 76 NSPL-SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
+ P +L F MLR + PN+ TL+S+ K A+ G LH +K
Sbjct: 140 DRPCDALLFFNQMLR---FGYSPNEFTLSSVIKAAAAERRGCC-GHQLHGFCVKCGFDSN 195
Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
GSAL+ Y+R+ D+A+ VFD + R+ V + A+I G A+ S +L +F M
Sbjct: 196 VHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLR 255
Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
+ + + A + +EQ + +H + + SG G L+D Y K+G + D
Sbjct: 256 DGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHD 315
Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
AR++FD L+ + ++WN+++ YAQ G + F + G P+E SFL+VLTA
Sbjct: 316 ARKIFDR-LAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACS 374
Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
++GL E + E MK + + P HY ++ +GRAG L A R MP EP AA+W
Sbjct: 375 HSGLLDEGWHYYELMK-KDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIW 433
Query: 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
+ALL+ +H ++ + + + +++P D +VI+ N+ + GRW++ A VRK MK+
Sbjct: 434 KALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKES 493
Query: 435 RVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNV 494
V+KE SW+E++ +H+F+A D H + E+I K E++ + + LGYVP ++ +V
Sbjct: 494 GVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHV 553
Query: 495 GDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIV 554
+E+ L YHSEK+ALAF L++ P G T+ I KN+R+C DCH + K S+VV REI+
Sbjct: 554 DQQEREVNLQYHSEKIALAFALLNTPP-GSTIHIKKNIRVCGDCHTAIKLASKVVGREII 612
Query: 555 VRDVNRYHRFLNGSCTCGDLW 575
VRD NR+H F +G+C+C D W
Sbjct: 613 VRDTNRFHHFKDGNCSCKDYW 633
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8LK93|PP145_ARATH Pentatricopeptide repeat-containing protein At2g02980 OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 353 bits (907), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 197/559 (35%), Positives = 306/559 (54%), Gaps = 7/559 (1%)
Query: 21 VHARALKSSQADRSIYNNLI---TNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
+ A A+KS D S LI T + +SY+ LF + P+IV + ++ +S
Sbjct: 48 IQAYAIKSHIEDVSFVAKLINFCTESPTESSMSYARHLFEAMSEPDIVIFNSMARGYSRF 107
Query: 78 PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
L +F + LP+ T SL K CA ++ A G LH LS+KL L D +
Sbjct: 108 TNPLEVFSLFVEILEDGILPDNYTFPSLLKACA-VAKALEEGRQLHCLSMKLGLDDNVYV 166
Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
L++ Y+ D+A+ VFD I E VVCY AMI G+A+ +R ++LS+F +M+ +
Sbjct: 167 CPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYL 226
Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
+ L + A L +++ + IH +A + V V T LID + K G + DA
Sbjct: 227 KPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVS 286
Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
+F E + ++ AW+AM+ YA G + +F + PDE +FL +L A + G
Sbjct: 287 IF-EKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTG 345
Query: 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
E K+ +M ++ + P ++HY ++ + RAG LEDA +P P +WR L
Sbjct: 346 RVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDKLPISPTPMLWRIL 405
Query: 378 LSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVR 437
L+ + H D+A K+ +R+ +++ YVI++N+ + +W+ V +RKVMKDR+
Sbjct: 406 LAACSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLYARNKKWEYVDSLRKVMKDRKAV 465
Query: 438 KEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH-NVGD 496
K G S IEV VH F +GD + T ++ L E+++E + GYVP ++H N+ D
Sbjct: 466 KVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKELKLSGYVPDTSMVVHANMND 525
Query: 497 REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
+EK L YHSEKLA+ FGL++ P G T+R+VKNLR+CRDCH + K IS + R++V+R
Sbjct: 526 QEKEITLRYHSEKLAITFGLLNTPP-GTTIRVVKNLRVCRDCHNAAKLISLIFGRKVVLR 584
Query: 557 DVNRYHRFLNGSCTCGDLW 575
DV R+H F +G C+CGD W
Sbjct: 585 DVQRFHHFEDGKCSCGDFW 603
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LYV3|PP377_ARATH Putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H89 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 351 bits (900), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 190/556 (34%), Positives = 308/556 (55%), Gaps = 3/556 (0%)
Query: 21 VHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
VH + LK+ D + L+ Y++ +S + ++FN +P ++V W+ +I+ +
Sbjct: 269 VHGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGF 328
Query: 80 SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
+R +PN+ TL+S+ CA + G LH L +K+ + +
Sbjct: 329 CNEAVDLFIRMREAFVVPNEFTLSSILNGCA-IGKCSGLGEQLHGLVVKVGFDLDIYVSN 387
Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
AL+ Y++ D A K+F E+ ++ V + +IVG+ + S+F + + V
Sbjct: 388 ALIDVYAKCEKMDTAVKLFAELSSKNEVSWNTVIVGYENLGEGGKAFSMFREALRNQVSV 447
Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
T S AL A A LA+M+ +HG A+ + + V V LID Y K G + A+ VF
Sbjct: 448 TEVTFSSALGACASLASMDLGVQVHGLAIKTNNAKKVAVSNSLIDMYAKCGDIKFAQSVF 507
Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
+E + ++ +WNA+++GY+ G L + +++ R P+ +FL VL+ NAGL
Sbjct: 508 NE-METIDVASWNALISGYSTHGLGRQALRILDIMKDRDCKPNGLTFLGVLSGCSNAGLI 566
Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
+ ++ E M + +EP LEHYTC++ +GR+G+L+ A ++ +P+EP +WRA+LS
Sbjct: 567 DQGQECFESMIRDHGIEPCLEHYTCMVRLLGRSGQLDKAMKLIEGIPYEPSVMIWRAMLS 626
Query: 380 FSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKE 439
S + A + + ++ INP D++ YV+V+N+ +G +W VA +RK MK+ V+KE
Sbjct: 627 ASMNQNNEEFARRSAEEILKINPKDEATYVLVSNMYAGAKQWANVASIRKSMKEMGVKKE 686
Query: 440 GGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREK 499
G SWIE +G VH F G H + I L L + R GYVP + +L ++ D EK
Sbjct: 687 PGLSWIEHQGDVHYFSVGLSDHPDMKLINGMLEWLNMKATRAGYVPDRNAVLLDMDDEEK 746
Query: 500 REALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVN 559
+ LW HSE+LALA+GLV + I+KNLRIC DCH + K IS +V+R++V+RD+N
Sbjct: 747 DKRLWVHSERLALAYGLVRMPSSRNRILIMKNLRICSDCHSAMKVISSIVQRDLVIRDMN 806
Query: 560 RYHRFLNGSCTCGDLW 575
R+H F G C+CGD W
Sbjct: 807 RFHHFHAGVCSCGDHW 822
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 350 bits (899), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 190/563 (33%), Positives = 306/563 (54%), Gaps = 19/563 (3%)
Query: 29 SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNI----VSWTALISAHSNSPLSLNIF 84
S D +N ++ YS+ ++RLF + I V+W+A IS ++ L
Sbjct: 291 SVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEAL 350
Query: 85 LSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH-------DKPFC 137
+ + PN+ TL S+ CAS+ A + G +H ++K + D+
Sbjct: 351 GVCRQMLSSGIKPNEVTLISVLSGCASVG-ALMHGKEIHCYAIKYPIDLRKNGHGDENMV 409
Query: 138 GSALVHFYSRFRSPDNAKKVFDEI--RERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
+ L+ Y++ + D A+ +FD + +ERDVV + MI G++Q+ +L + ++M
Sbjct: 410 INQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEE 469
Query: 196 DVGS--TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDR-NVIVGTGLIDGYGKAGIV 252
D + + +S AL A A LAA+ + IH +A+ + + + V LID Y K G +
Sbjct: 470 DCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSI 529
Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
SDAR VFD N+ N + W ++M GY G L +F + GF D + L VL A
Sbjct: 530 SDARLVFD-NMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYA 588
Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
++G+ + ++ RMK + + PG EHY CL+ +GRAGRL A R+ MP EP
Sbjct: 589 CSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPV 648
Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
VW A LS IHGK ++ +++ ++ D +Y +++N+ + GRW +V +R +M+
Sbjct: 649 VWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMR 708
Query: 433 DRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH 492
+ V+K G SW+E F GD+ H ++IY L + M+ + +GYVP LH
Sbjct: 709 HKGVKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLLDHMQRIKDIGYVPETGFALH 768
Query: 493 NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVERE 552
+V D EK + L+ HSEKLALA+G+++ P+G +RI KNLR+C DCH +F Y+SR+++ +
Sbjct: 769 DVDDEEKDDLLFEHSEKLALAYGILT-TPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHD 827
Query: 553 IVVRDVNRYHRFLNGSCTCGDLW 575
I++RD +R+H F NGSC+C W
Sbjct: 828 IILRDSSRFHHFKNGSCSCKGYW 850
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 350 bits (898), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 194/550 (35%), Positives = 303/550 (55%), Gaps = 16/550 (2%)
Query: 32 DRSIYNNLITNYSKSNLLSYSLRLFNHIPS-PNIVSWTALISA---HSNSPLSLNIFLSM 87
D++I L+ YSK + +LRLF I N+VSWTA+IS + ++++F M
Sbjct: 329 DQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEM 388
Query: 88 LRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSR 147
R PN+ T + + +S + +H+ +K + G+AL+ Y +
Sbjct: 389 KRK---GVRPNEFTYSVILTALPVISPS-----EVHAQVVKTNYERSSTVGTALLDAYVK 440
Query: 148 FRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGA 207
+ A KVF I ++D+V + AM+ G+AQ ++ +F ++ + + S
Sbjct: 441 LGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSI 500
Query: 208 LRA-AAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL 266
L AA A+M Q + HG A+ S LD ++ V + L+ Y K G + A VF
Sbjct: 501 LNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREK- 559
Query: 267 NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326
+ ++WN+M++GYAQ G L++F ++ R D +F+ V A +AGL E EK+
Sbjct: 560 DLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYF 619
Query: 327 ERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGK 386
+ M K+ P EH +C++ RAG+LE A ++ MP + +WR +L+ +H K
Sbjct: 620 DIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKK 679
Query: 387 ADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIE 446
++ +++I + P D +AYV+++N+ + G W E A+VRK+M +R V+KE G SWIE
Sbjct: 680 TELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIE 739
Query: 447 VKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYH 506
VK K + FLAGDR H + IY KL +L + LGY P +L ++ D K L H
Sbjct: 740 VKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQH 799
Query: 507 SEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRF-L 565
SE+LA+AFGL++ P+G L I+KNLR+C DCH K I+++ EREIVVRD NR+H F
Sbjct: 800 SERLAIAFGLIA-TPKGSPLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSS 858
Query: 566 NGSCTCGDLW 575
+G C+CGD W
Sbjct: 859 DGVCSCGDFW 868
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 350 bits (897), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 173/522 (33%), Positives = 302/522 (57%), Gaps = 3/522 (0%)
Query: 54 RLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLS 113
R+F +P ++VS+ +I+ ++ S + + + T P+ TL+S+ +
Sbjct: 197 RVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYV 256
Query: 114 HAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMI 173
+ G +H ++ + + GS+LV Y++ +++++VF + RD + + +++
Sbjct: 257 DV-IKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLV 315
Query: 174 VGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLD 233
G+ QN R ++L +F M ++ V S + A A LA + + +HG+ + G
Sbjct: 316 AGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFG 375
Query: 234 RNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHL 293
N+ + + L+D Y K G + AR++FD ++VL+ ++W A++ G+A G + LF
Sbjct: 376 SNIFIASALVDMYSKCGNIKAARKIFDR-MNVLDEVSWTAIIMGHALHGHGHEAVSLFEE 434
Query: 294 LEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAG 353
++ +G P++ +F+AVLTA + GL E+ + M Y L LEHY + +GRAG
Sbjct: 435 MKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAG 494
Query: 354 RLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVAN 413
+LE+A M EP +VW LLS ++H ++A K+ +++ ++ + AYV++ N
Sbjct: 495 KLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCN 554
Query: 414 VLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAE 473
+ + GRW E+A++R M+ + +RK+ SWIE+K K H F++GDR H + I L
Sbjct: 555 MYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINEFLKA 614
Query: 474 LMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLR 533
+ME+ E+ GYV +LH+V + KRE L+ HSE+LA+AFG+++ P G T+R+ KN+R
Sbjct: 615 VMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEP-GTTIRVTKNIR 673
Query: 534 ICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
IC DCH + K+IS++ EREI+VRD +R+H F G+C+CGD W
Sbjct: 674 ICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGNCSCGDYW 715
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 575 | ||||||
| 359478768 | 590 | PREDICTED: pentatricopeptide repeat-cont | 0.953 | 0.928 | 0.688 | 0.0 | |
| 449433225 | 583 | PREDICTED: pentatricopeptide repeat-cont | 0.966 | 0.953 | 0.631 | 0.0 | |
| 356510837 | 561 | PREDICTED: pentatricopeptide repeat-cont | 0.965 | 0.989 | 0.618 | 0.0 | |
| 356528186 | 561 | PREDICTED: pentatricopeptide repeat-cont | 0.965 | 0.989 | 0.621 | 0.0 | |
| 357154677 | 574 | PREDICTED: pentatricopeptide repeat-cont | 0.923 | 0.925 | 0.498 | 1e-141 | |
| 226496697 | 563 | vegetative storage protein [Zea mays] gi | 0.766 | 0.783 | 0.551 | 1e-136 | |
| 414864741 | 563 | TPA: vegetative storage protein [Zea may | 0.766 | 0.783 | 0.549 | 1e-136 | |
| 413919886 | 572 | hypothetical protein ZEAMMB73_731783 [Ze | 0.72 | 0.723 | 0.569 | 1e-126 | |
| 242036981 | 620 | hypothetical protein SORBIDRAFT_01g04758 | 0.892 | 0.827 | 0.482 | 1e-123 | |
| 255574899 | 356 | pentatricopeptide repeat-containing prot | 0.565 | 0.912 | 0.665 | 1e-114 |
| >gi|359478768|ref|XP_002283262.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 767 bits (1981), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/565 (68%), Positives = 460/565 (81%), Gaps = 17/565 (3%)
Query: 4 DLNQQPQPQNTSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNH-IPSP 62
+L + +PR++HA+A+KS+ DRS YN+LIT YSKSNLLS ++R+F+H IPSP
Sbjct: 18 ELYTATTTSTPNCNPRLIHAQAIKSAITDRSFYNSLITLYSKSNLLSKAVRIFHHHIPSP 77
Query: 63 NIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSL 122
N+VSWTALISA++++ +L F+SMLRHPTL PNQRTLASL KTCASL + FGL L
Sbjct: 78 NVVSWTALISAYASTSFALLHFISMLRHPTL---PNQRTLASLLKTCASLP-SLSFGLQL 133
Query: 123 HSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRL 182
HSLSLKLSL +PF SALV+FYS+ R P A +VFDEI ERD VC+ AMIVG AQN+R
Sbjct: 134 HSLSLKLSLSAQPFVSSALVNFYSKCRLPLEACRVFDEITERDEVCFAAMIVGLAQNARP 193
Query: 183 VDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGL 242
VD+L VF +M++ +VGSTMY VSGALRAA+ELAA+EQCR+IHGHAV +G D N+IVGT L
Sbjct: 194 VDALLVFGEMKACNVGSTMYSVSGALRAASELAALEQCRIIHGHAVSTGFDSNLIVGTAL 253
Query: 243 IDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPD 302
+DGYGKAG+V DARR+FDE L LN +AWNAMMAGYAQQGDQ +V+ELF+ +E RG PD
Sbjct: 254 VDGYGKAGLVLDARRIFDELLPSLNEVAWNAMMAGYAQQGDQRSVVELFNSMEARGLVPD 313
Query: 303 EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIA 362
EYSFLA+LT+L NAGL GE+E W+ RMKV Y LEPGLEHYTCL+ MGRAG+LEDAERIA
Sbjct: 314 EYSFLAILTSLYNAGLVGEAEGWLTRMKVDYGLEPGLEHYTCLVGTMGRAGQLEDAERIA 373
Query: 363 MAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWD 422
M MPFEPDAAVWRALLS A+HG ADMA MG+RL++++P DDSAYVIVANVL+ GRWD
Sbjct: 374 MTMPFEPDAAVWRALLSSCAMHGAADMAWAMGRRLMELDPQDDSAYVIVANVLATNGRWD 433
Query: 423 EVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLG 482
EVAEVRK+MKDR V+KEGGRSWIEV+GKVHVFLAGDR HER+ +IY KL ELME+ E LG
Sbjct: 434 EVAEVRKMMKDRMVKKEGGRSWIEVRGKVHVFLAGDRRHERSHEIYAKLVELMEKIEELG 493
Query: 483 YVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVS-GAPRGKTLRIVKNLRICRDCHES 541
Y + K+E LWYHSEKLA+AFG+VS AP GK LRIVKNLRIC+DCHE+
Sbjct: 494 Y-----------KEGVKKETLWYHSEKLAVAFGVVSDAAPPGKALRIVKNLRICKDCHEA 542
Query: 542 FKYISRVVEREIVVRDVNRYHRFLN 566
FKYIS VVEREI+VRDVNRYHRFLN
Sbjct: 543 FKYISCVVEREIIVRDVNRYHRFLN 567
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449433225|ref|XP_004134398.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like [Cucumis sativus] gi|449487598|ref|XP_004157706.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 723 bits (1865), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/561 (63%), Positives = 448/561 (79%), Gaps = 5/561 (0%)
Query: 16 TDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS 75
+DPRI HA+A+KS + +YNNLIT YSK+NLL YS RLFN IP P+IVSWTALISAHS
Sbjct: 27 SDPRIDHAQAIKSPATECVVYNNLITRYSKANLLHYSARLFNQIPFPDIVSWTALISAHS 86
Query: 76 NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
++ LSL F+SMLR+PT PN+RTLA LFKTCASL FG +LHSL+ KLSL + P
Sbjct: 87 STFLSLRHFVSMLRYPTF---PNERTLAPLFKTCASLP-CVSFGFALHSLAYKLSLCNGP 142
Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
+ GSALV+FYS+ R ++A KVFDEI RD CY A++VG AQN++ + +LS+F M++S
Sbjct: 143 YSGSALVNFYSKCRLFNDACKVFDEISYRDEFCYSALVVGLAQNAQSIRALSMFRQMKAS 202
Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
+V ST+Y VSGALRAAA+LAA+E+CRVIH HAVV+GLD NVIV T LIDGYGK+G++ DA
Sbjct: 203 EVASTIYSVSGALRAAADLAALERCRVIHSHAVVTGLDTNVIVQTALIDGYGKSGLIIDA 262
Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
R+VFDENL +N + WNAM++ YAQQGDQ++ LE+F+ ++ G +PDEYSFLA+L++ CN
Sbjct: 263 RQVFDENLGCMNIVGWNAMLSSYAQQGDQNSTLEVFNSMKPFGMSPDEYSFLAILSSFCN 322
Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
+GL E + W+ RM V Y ++P LEH+TCLI A+GR G+LE+AER+AM MPF PD AVWR
Sbjct: 323 SGLVSEIKPWLRRMIVEYGVKPTLEHFTCLIDALGRTGKLEEAERVAMTMPFVPDEAVWR 382
Query: 376 ALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435
ALLS SA HG DMA M KRL+++N +DDSAYVIV+N LS RW+EVA VRK+MK+R
Sbjct: 383 ALLSSSASHGAGDMAWTMAKRLLELNQHDDSAYVIVSNALSVAARWEEVALVRKLMKERH 442
Query: 436 VRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVG 495
V+K G+SWIEV+G+ HVFLAGDR HER E++ KL EL+ E E+LGYVPV E LH VG
Sbjct: 443 VKKISGKSWIEVRGEAHVFLAGDRNHERAEEMNAKLKELVGEIEKLGYVPVCSETLHKVG 502
Query: 496 DREKREALWYHSEKLALAFGLVSG-APRGKTLRIVKNLRICRDCHESFKYISRVVEREIV 554
++E++EAL YHSEKLALA+G+++G AP GK LRI+KNLRICRDCH FKY SRV+++EI+
Sbjct: 503 EKERKEALLYHSEKLALAYGILTGVAPPGKALRIIKNLRICRDCHLFFKYASRVLKKEII 562
Query: 555 VRDVNRYHRFLNGSCTCGDLW 575
VRD+NRYHRF GSCTC D+W
Sbjct: 563 VRDINRYHRFSYGSCTCADIW 583
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356510837|ref|XP_003524140.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 716 bits (1847), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/574 (61%), Positives = 446/574 (77%), Gaps = 19/574 (3%)
Query: 4 DLNQQPQPQNTSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIP-SP 62
D N + S DPR+ HARA+ S DR+++NNLIT+YSKSNL SY++ LF+ +P P
Sbjct: 5 DENDDEATMSMSMDPRVRHARAITSHAKDRAVWNNLITHYSKSNLSSYAVSLFHRLPFPP 64
Query: 63 NIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSL 122
N+VSWTALISAHSN+ LSL FL+MLRH TL PN RTLASLF TCA+L+ A F LSL
Sbjct: 65 NVVSWTALISAHSNTLLSLRHFLAMLRHNTL---PNHRTLASLFATCAALT-AVSFALSL 120
Query: 123 HSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRL 182
HSL+LKL+L PF S+L+ Y++ R P NA+KVFDEI + D VC+ A++V AQNSR
Sbjct: 121 HSLALKLALAHHPFPASSLLSVYAKLRMPHNARKVFDEIPQPDNVCFSALVVALAQNSRS 180
Query: 183 VDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGL 242
VD+LSVF+DMR ST++ VSG LRAAA+LAA+EQCR++H HA+++GLD NV+VG+ +
Sbjct: 181 VDALSVFSDMRCRGFASTVHGVSGGLRAAAQLAALEQCRMMHAHAIIAGLDSNVVVGSAV 240
Query: 243 IDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPD 302
+DGYGKAG+V DARRVF+++L +N WNAMMAGYAQ GD + ELF LE G PD
Sbjct: 241 VDGYGKAGVVDDARRVFEDSLDDMNIAGWNAMMAGYAQHGDYQSAFELFESLEGFGLVPD 300
Query: 303 EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIA 362
EY+FLA+LTALCNAG+ E +W RM+V Y LEP LEHYTCL+ AM RAG LE AER+
Sbjct: 301 EYTFLAILTALCNAGMFLEIYRWFTRMRVDYGLEPSLEHYTCLVGAMARAGELERAERVV 360
Query: 363 MAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWD 422
+ MPFEPDAAVWRALLS A G+AD A M KR++++ P+DD AYV VANVLS GRWD
Sbjct: 361 LTMPFEPDAAVWRALLSVCAYRGEADKAWCMAKRVLELEPHDDYAYVSVANVLSSAGRWD 420
Query: 423 EVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLG 482
+VAE+RK+MKDRRV+K+GGRSWIEV+G+VHVF+AGD HER+++IY KLAELM + E+LG
Sbjct: 421 DVAELRKMMKDRRVKKKGGRSWIEVQGEVHVFVAGDWKHERSKEIYQKLAELMGDIEKLG 480
Query: 483 YVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSG-APRGKTLRIVKNLRICRDCHES 541
Y +++E+LWYHSEKLA+AFG++ G AP GK LRIVKNLRIC+DCHE+
Sbjct: 481 Y-------------EKRKESLWYHSEKLAVAFGVLCGSAPPGKPLRIVKNLRICKDCHEA 527
Query: 542 FKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
FKY++RV+EREI+VRDVNRYHRF+NG+CTC D+W
Sbjct: 528 FKYMTRVLEREIIVRDVNRYHRFVNGNCTCRDIW 561
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356528186|ref|XP_003532686.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 714 bits (1842), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/574 (62%), Positives = 442/574 (77%), Gaps = 19/574 (3%)
Query: 4 DLNQQPQPQNTSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIP-SP 62
D N + S DPR HA+A+ S DR+++NNLIT+YSKS+L SY++ LF +P P
Sbjct: 5 DENVNEAAMSMSMDPRARHAQAITSHIKDRAVWNNLITHYSKSDLSSYAVSLFQRLPFPP 64
Query: 63 NIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSL 122
N+VSWTALISAHSN+ LSL FL+MLRH TL PN RT+ASLF TCA+L+ A F LSL
Sbjct: 65 NVVSWTALISAHSNTLLSLRHFLAMLRHNTL---PNHRTVASLFTTCAALT-AVSFALSL 120
Query: 123 HSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRL 182
HSL+LKLSL PF S+L+ Y++ R P NA+KVFDEI + D VC+ A+IV AQNSR
Sbjct: 121 HSLALKLSLSQHPFPASSLLSLYAKLRMPLNARKVFDEIPQPDNVCFSALIVALAQNSRS 180
Query: 183 VDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGL 242
VD+ SVF++MR ST++ VSG LRAAA+LAA+EQCR++H HAVV GLD NV+VG+ L
Sbjct: 181 VDASSVFSEMRGRGFASTVHSVSGVLRAAAQLAALEQCRMMHAHAVVLGLDSNVVVGSAL 240
Query: 243 IDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPD 302
+DGYGKAG+V+DARRVF++NL +N + WNAMMAGYAQQGD + ELF LE G PD
Sbjct: 241 VDGYGKAGVVNDARRVFEDNLDDMNVVGWNAMMAGYAQQGDYQSAFELFESLEGCGLVPD 300
Query: 303 EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIA 362
EY+FLA+LTALCNAG+ E W RM+V Y LEP LEHYTCL+ AM RAG LE AER+
Sbjct: 301 EYTFLAILTALCNAGMFLEIAPWFTRMRVDYGLEPSLEHYTCLVGAMARAGELERAERVV 360
Query: 363 MAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWD 422
+ MP EPDAAVWRALLS A G+AD A M KR++++ P DD AYV VANVLS GRWD
Sbjct: 361 LTMPIEPDAAVWRALLSVCAYRGEADKAWSMAKRVLELEPNDDYAYVSVANVLSSAGRWD 420
Query: 423 EVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLG 482
+VAE+RK+MKDRRV+K+GGRSWIEV+G+VHVF+AGD HER+++IY KLAELM + E+LG
Sbjct: 421 DVAELRKMMKDRRVKKKGGRSWIEVQGEVHVFVAGDWKHERSKEIYQKLAELMGDIEKLG 480
Query: 483 YVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSG-APRGKTLRIVKNLRICRDCHES 541
Y +++EALWYHSEKLA+AFG++ G AP GK LRIVKNLRIC+DCHE+
Sbjct: 481 Y-------------EKRKEALWYHSEKLAVAFGVLCGPAPPGKPLRIVKNLRICKDCHEA 527
Query: 542 FKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
FKY++RV+EREI+VRDVNRYHRF+NG+CTC D+W
Sbjct: 528 FKYMTRVIEREIIVRDVNRYHRFVNGNCTCSDIW 561
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357154677|ref|XP_003576863.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust.
Identities = 281/564 (49%), Positives = 352/564 (62%), Gaps = 33/564 (5%)
Query: 21 VHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIP-----SPNIVSWTALISAHS 75
+HA +K+S A R YN L+ Y S RL +P S S +L S +
Sbjct: 35 LHAVLVKTSSASRDAYNLLLARYPPP----LSQRLLARLPFRARGSQLASSLASLTSPPA 90
Query: 76 NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
++P L L P+L + +L L SL+ + +LS P
Sbjct: 91 SAPELLRRLLRASSPPSLLLADSPLSLL-LRSMPPSLAPHLHALAAKLALS------TSP 143
Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEI--RERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
S L+ YSR RSPD A+ +FDEI RD VCY + IVG AQN+R SLSVFA MR
Sbjct: 144 VSASCLITLYSRSRSPDAARHLFDEIPLAYRDTVCYTSTIVGLAQNARYEVSLSVFAAMR 203
Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
+ STMY +SGALRA A LAA+EQ R IH HAVV GLD NV VGT L+D YGKAG+V
Sbjct: 204 YDALASTMYALSGALRATAGLAALEQTRGIHAHAVVVGLDGNVAVGTALVDAYGKAGVVH 263
Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
DA +VFD+ N I WNA++A +AQQGD V+ LFH + F PD +FLA+LTA
Sbjct: 264 DAAKVFDDLAGDRNLITWNAILAAHAQQGDLEKVIALFHEMAGMHFVPDRLTFLALLTAC 323
Query: 314 CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
NAG A ++E W+E M+++Y ++P L HYTC++ AM R GRLEDA+ I MP +PDAAV
Sbjct: 324 SNAGAAADAEFWLEAMQLKYNVKPDLAHYTCVVGAMARVGRLEDADSIVCTMPCKPDAAV 383
Query: 374 WRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433
WR LL+ +H KADMA MG+RL++I+P DDSAYV++ANV S GR D+VAE M+D
Sbjct: 384 WRTLLAGCVVHHKADMAGVMGQRLLEIDPKDDSAYVMLANVYSAAGRSDDVAEAWTAMRD 443
Query: 434 RRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHN 493
VRKEGGRSWIEV+G+VHVF+A D+ HE+ DIY KL EL++E E+LGY
Sbjct: 444 HGVRKEGGRSWIEVRGQVHVFVANDKRHEQLLDIYEKLDELIKEVEKLGY---------- 493
Query: 494 VGDREKREALWYHSEKLALAFGLVSGA--PRGKTLRIVKNLRICRDCHESFKYISRVVER 551
+E E LW+HSE+LALA+GLVS P GK LRIVKNLRIC CHE FKY S V R
Sbjct: 494 ---KEVDEGLWHHSERLALAYGLVSSGSVPSGKMLRIVKNLRICAHCHEFFKYASIVTGR 550
Query: 552 EIVVRDVNRYHRFLNGSCTCGDLW 575
IV+RDVNRYH G C+C + W
Sbjct: 551 VIVIRDVNRYHTIKQGVCSCRNYW 574
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|226496697|ref|NP_001147836.1| vegetative storage protein [Zea mays] gi|195614038|gb|ACG28849.1| vegetative storage protein [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust.
Identities = 252/457 (55%), Positives = 314/457 (68%), Gaps = 16/457 (3%)
Query: 122 LHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEI--RERDVVCYGAMIVGFAQN 179
+H+L+ KL+L P+ S L+ YSR RSP A+ +FDEI RD VCY + IVG AQN
Sbjct: 120 VHALAFKLALSSSPYSASCLITLYSRARSPACARHLFDEIPVANRDPVCYSSTIVGLAQN 179
Query: 180 SRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVG 239
+SLSVFA MR++ V STM+ +SG+LRAAA LA +EQ IH HAVV GLD NV VG
Sbjct: 180 GWYEESLSVFAGMRANGVDSTMHALSGSLRAAAGLAVLEQTCGIHAHAVVVGLDGNVAVG 239
Query: 240 TGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGF 299
T L+D YGKAG V DA +VF+ N I WNA+++ +AQQGD V LF+ + GF
Sbjct: 240 TALVDAYGKAGDVDDAAKVFEGLGGDRNLITWNAVLSAHAQQGDVQEVTGLFNQMMELGF 299
Query: 300 APDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAE 359
APD +FLAVLT+ NAG A E++ W+E M+ +Y ++P LEHYTC++ AM R G LEDAE
Sbjct: 300 APDGLTFLAVLTSCSNAGAATEAKFWLEAMQSKYGVKPDLEHYTCVVGAMARVGHLEDAE 359
Query: 360 RIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVG 419
A MP +PDAAVWR LL +H + DMA MG+RL++INP DDSAYV++ANV S G
Sbjct: 360 SFACTMPCKPDAAVWRTLLMGCVVHRRVDMAESMGQRLLEINPKDDSAYVMLANVYSTAG 419
Query: 420 RWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECE 479
+ DE AE M+D VRKEGGRSWIEV+G VHVF+A +R HE+ +IY KL EL++E E
Sbjct: 420 KTDEEAEAWTAMRDHGVRKEGGRSWIEVRGLVHVFVANERRHEQLLEIYDKLHELIQEVE 479
Query: 480 RLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSG-APRGKTLRIVKNLRICRDC 538
+LGY +E E LW+HSE+LALA+GL+SG AP GK LRIVKNLRIC C
Sbjct: 480 KLGY-------------KEADERLWHHSERLALAYGLISGAAPSGKVLRIVKNLRICAHC 526
Query: 539 HESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
HE FKY S V++R IVVRDVNRYH G C+C W
Sbjct: 527 HEFFKYASMVIDRVIVVRDVNRYHTIKKGDCSCRGCW 563
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|414864741|tpg|DAA43298.1| TPA: vegetative storage protein [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust.
Identities = 251/457 (54%), Positives = 314/457 (68%), Gaps = 16/457 (3%)
Query: 122 LHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEI--RERDVVCYGAMIVGFAQN 179
+H+L+ KL+L P+ S L+ YSR RSP A+ +FDEI RD VCY + IVG AQN
Sbjct: 120 VHALAFKLALSSSPYSASCLITLYSRARSPACARHLFDEIPVANRDSVCYSSTIVGLAQN 179
Query: 180 SRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVG 239
+SLSVFA MR++ V STM+ +SG+LRAAA LA +EQ IH HAVV GLD NV VG
Sbjct: 180 GWYEESLSVFAGMRANGVDSTMHALSGSLRAAAGLAVLEQTCGIHAHAVVVGLDGNVAVG 239
Query: 240 TGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGF 299
T L+D YGKAG V DA +VF+ N I WNA+++ +AQQGD V LF+ + GF
Sbjct: 240 TALVDAYGKAGDVDDAAKVFEGLGGDRNLITWNAVLSAHAQQGDVQEVTGLFNQMMKLGF 299
Query: 300 APDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAE 359
APD +FLAVLT+ NAG A E++ W+E M+ +Y ++P LEHYTC++ AM R G LEDAE
Sbjct: 300 APDGLTFLAVLTSCSNAGAATEAKFWLEAMQSKYGVKPDLEHYTCVVGAMARVGHLEDAE 359
Query: 360 RIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVG 419
A MP +PDAAVWR LL +H + DMA MG+RL++INP DDSAYV++ANV S G
Sbjct: 360 SFACTMPCKPDAAVWRTLLMGCVVHRRVDMAESMGQRLLEINPKDDSAYVMLANVYSTAG 419
Query: 420 RWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECE 479
+ +E AE M+D VRKEGGRSWIEV+G VHVF+A +R HE+ +IY KL EL++E E
Sbjct: 420 KTNEEAEAWTAMRDHGVRKEGGRSWIEVRGLVHVFVANERRHEQLLEIYDKLHELIQEVE 479
Query: 480 RLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSG-APRGKTLRIVKNLRICRDC 538
+LGY +E E LW+HSE+LALA+GL+SG AP GK LRIVKNLRIC C
Sbjct: 480 KLGY-------------KEADERLWHHSERLALAYGLISGAAPSGKVLRIVKNLRICAHC 526
Query: 539 HESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
HE FKY S V++R IVVRDVNRYH G C+C W
Sbjct: 527 HEFFKYASMVIDRVIVVRDVNRYHTIKKGDCSCRGCW 563
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|413919886|gb|AFW59818.1| hypothetical protein ZEAMMB73_731783 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 459 bits (1182), Expect = e-126, Method: Compositional matrix adjust.
Identities = 245/430 (56%), Positives = 298/430 (69%), Gaps = 16/430 (3%)
Query: 149 RSPDNAKKVFDEIR--ERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSG 206
RSP +A+ +FDEI RD VCY + IVG AQN +SLSVFA MR + V STMY +SG
Sbjct: 156 RSPASARHLFDEIPVANRDPVCYSSTIVGLAQNGWYEESLSVFAGMRVNAVDSTMYALSG 215
Query: 207 ALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL 266
ALRAAA LA +EQ IH HAVV GLD NV VGT L+D YGKAG V DA RVF +
Sbjct: 216 ALRAAAGLAVLEQTCGIHAHAVVVGLDGNVCVGTALVDAYGKAGGVDDAARVFKGLGADR 275
Query: 267 NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326
N I WN +++ +AQQGD V+ LF+ + GFAPD +FLAVLTA NAG A E+E W+
Sbjct: 276 NLITWNTVLSAHAQQGDVQAVIGLFNQMMELGFAPDGLTFLAVLTACSNAGAATEAEFWL 335
Query: 327 ERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGK 386
E M+ +Y ++PGLEHYTC++ AM R GRLEDAE +A MP +PDAAVWR LL +H K
Sbjct: 336 ETMQSKYSVKPGLEHYTCVVGAMARMGRLEDAESVACTMPCKPDAAVWRTLLMGCVVHRK 395
Query: 387 ADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIE 446
D+A MG+RL++INP DDSAYV++ANV S G+ +E AE M+D VRKEGGRSWIE
Sbjct: 396 VDLAESMGQRLLEINPKDDSAYVLLANVYSAAGKKNEEAEAWTAMRDHGVRKEGGRSWIE 455
Query: 447 VKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYH 506
V+G VHVF+A +R HE+ +IY KL EL+ E E+LGY +E E +H
Sbjct: 456 VRGLVHVFVANERRHEQLLEIYDKLTELILEVEKLGY-------------KETDEGFGHH 502
Query: 507 SEKLALAFGLVSG-APRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFL 565
SE+LALA+GL+SG AP GK LRIVKNLRIC CHE FKY S V++R IVVRDVNRYH
Sbjct: 503 SERLALAYGLISGAAPSGKVLRIVKNLRICAHCHEFFKYASMVIDRVIVVRDVNRYHTIK 562
Query: 566 NGSCTCGDLW 575
G C+C D W
Sbjct: 563 KGDCSCRDCW 572
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242036981|ref|XP_002465885.1| hypothetical protein SORBIDRAFT_01g047580 [Sorghum bicolor] gi|241919739|gb|EER92883.1| hypothetical protein SORBIDRAFT_01g047580 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 449 bits (1156), Expect = e-123, Method: Compositional matrix adjust.
Identities = 268/556 (48%), Positives = 347/556 (62%), Gaps = 43/556 (7%)
Query: 17 DPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRL-FNHIPSPNIVSWTALISAHS 75
DP ++HA +K++ + R+ YN L++ Y S L RL F + S ++L ++
Sbjct: 23 DPAVLHAVLVKTASSSRAAYNLLLSRYPPSLSLPLLSRLPFRPTAASLTSSLSSLSASSP 82
Query: 76 NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
S L L + + L+ P L S+ + A L HA F KL+L P
Sbjct: 83 ASALPLLRRVLGMSSALLADGPLSSLLRSMTPSLAPLVHALAF---------KLALSSSP 133
Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEI--RERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
+ S L+ YSR RSP +A+ +FDEI RD VCY + IVG AQN + +SLSVFA MR
Sbjct: 134 YSASCLITLYSRARSPASARHLFDEIPVANRDPVCYSSTIVGLAQNGQYEESLSVFAGMR 193
Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
++ V STMY +SGALRAAA LA +EQ IH HA+V GLD NV VGT L+D YGKAG+V
Sbjct: 194 ANAVDSTMYALSGALRAAAGLAVLEQTCGIHAHALVVGLDGNVAVGTALVDAYGKAGVVG 253
Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
DA +VF+ N I WNA+++ +AQQGD V+ LF+ + GFAPD +FLAVLTA
Sbjct: 254 DAAKVFEGLGGDRNLITWNAVLSAHAQQGDVQAVIGLFNQMMELGFAPDGLTFLAVLTAC 313
Query: 314 CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
NAG A E+E W+E M+ +Y ++PGLEHYTC++ AM R GRL DAE +A MP +PDAAV
Sbjct: 314 SNAGAATEAEFWLEAMQSKYSVKPGLEHYTCVVGAMARVGRLVDAESVACTMPCKPDAAV 373
Query: 374 WRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433
WR LL +H K DDS YV++ANV S G+ +E AE M+D
Sbjct: 374 WRTLLMGCVVHRK-----------------DDSTYVMLANVYSAAGKKNEEAEAWTAMRD 416
Query: 434 RRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHN 493
R VRKEGGRSWIEV+G+VHVF+A +R HE+ +IY KL EL+++ E+LGY
Sbjct: 417 RGVRKEGGRSWIEVRGRVHVFVANERRHEQLLEIYDKLNELVQKVEKLGY---------- 466
Query: 494 VGDREKREALWYHSEKLALAFGLVSG-APRGKTLRIVKNLRICRDCHESFKYISRVVERE 552
+E E W+HSE+LALA+GL+SG AP GK LRIVKNLRIC CHE FKY S V++R
Sbjct: 467 ---KEADEGFWHHSERLALAYGLISGAAPSGKVLRIVKNLRICAHCHEFFKYASMVIDRV 523
Query: 553 IVVRDVNRYHRFLNGS 568
IVVRDVNRYH G+
Sbjct: 524 IVVRDVNRYHTIKKGT 539
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255574899|ref|XP_002528356.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223532224|gb|EEF34028.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 221/332 (66%), Positives = 269/332 (81%), Gaps = 7/332 (2%)
Query: 10 QPQNTSTDPRIVHARALKSSQADRSIYNNLITNYSKS-NLL--SYSLRLFNHIPSPNIVS 66
Q +T+ DPRI+HA+A+KS + S +N+LIT YS+S N L SY+ RLF+ +PSPNIVS
Sbjct: 3 QLLHTNADPRILHAQAIKSPYTNLSCFNHLITLYSRSPNFLVFSYANRLFSLLPSPNIVS 62
Query: 67 WTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLS 126
WT+LISAH++S LSL+ FLSMLR P LPNQRTLASLFK C +LS A FG SLHS++
Sbjct: 63 WTSLISAHTHSFLSLHHFLSMLRRP---ILPNQRTLASLFKACTNLS-ALSFGFSLHSMA 118
Query: 127 LKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSL 186
LKLSL +PF GSALV+FYS+ R P+NA+KVFDE+ ERD VCYGA+IVG AQNSR +D+L
Sbjct: 119 LKLSLDTQPFSGSALVNFYSKCRLPENARKVFDEMPERDEVCYGALIVGLAQNSRAIDAL 178
Query: 187 SVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGY 246
SVF +M+ +V ST+Y VSGALRAAA +AA+EQCRVIHGHAVVSGLDRNVI+G+ LIDGY
Sbjct: 179 SVFNEMKFCNVSSTVYSVSGALRAAAAMAALEQCRVIHGHAVVSGLDRNVIIGSSLIDGY 238
Query: 247 GKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSF 306
GKAG++ DAR VFDE L LN +AWNAMMA YAQQGD+++VLELF+ + G PDEYSF
Sbjct: 239 GKAGVIMDARMVFDELLPGLNMVAWNAMMAVYAQQGDKNSVLELFNAMRGEGLLPDEYSF 298
Query: 307 LAVLTALCNAGLAGESEKWIERMKVRYKLEPG 338
LA+LTA CNAGL ESEKW++ MKV Y +EPG
Sbjct: 299 LAILTAFCNAGLYLESEKWLKSMKVEYGVEPG 330
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 575 | ||||||
| TAIR|locus:2055919 | 786 | AT2G22070 "AT2G22070" [Arabido | 0.758 | 0.554 | 0.350 | 8.3e-81 | |
| TAIR|locus:2125899 | 990 | AT4G33170 [Arabidopsis thalian | 0.968 | 0.562 | 0.314 | 1.8e-80 | |
| TAIR|locus:2149664 | 588 | MEF1 "mitochondrial RNA editin | 0.928 | 0.908 | 0.319 | 8.7e-79 | |
| TAIR|locus:2205425 | 743 | AT1G68930 "AT1G68930" [Arabido | 0.937 | 0.725 | 0.308 | 1.1e-76 | |
| TAIR|locus:2032955 | 790 | AT1G25360 "AT1G25360" [Arabido | 0.756 | 0.550 | 0.335 | 3.6e-76 | |
| TAIR|locus:2057574 | 583 | AT2G33760 [Arabidopsis thalian | 0.958 | 0.945 | 0.321 | 6.3e-76 | |
| TAIR|locus:2140235 | 781 | AT4G02750 [Arabidopsis thalian | 0.756 | 0.556 | 0.315 | 3.2e-75 | |
| TAIR|locus:2151501 | 697 | AT5G46460 [Arabidopsis thalian | 0.930 | 0.767 | 0.289 | 5.2e-75 | |
| TAIR|locus:2078653 | 825 | AT3G02010 [Arabidopsis thalian | 0.951 | 0.663 | 0.286 | 2.3e-74 | |
| TAIR|locus:2082886 | 850 | EMB2261 "embryo defective 2261 | 0.892 | 0.603 | 0.3 | 1.4e-73 |
| TAIR|locus:2055919 AT2G22070 "AT2G22070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 762 (273.3 bits), Expect = 8.3e-81, Sum P(2) = 8.3e-81
Identities = 153/437 (35%), Positives = 233/437 (53%)
Query: 139 SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG 198
+AL+ Y + + AK +F +++RDVV + AMIVG+ Q+ +++++F M
Sbjct: 351 TALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQR 410
Query: 199 STMYCVSGXXXXXXXXXXMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRV 258
Y ++ + + IHG AV SG +V V LI Y KAG ++ A R
Sbjct: 411 PNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRA 470
Query: 259 FDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL 318
FD ++++W +M+ AQ G LELF + M G PD +++ V +A +AGL
Sbjct: 471 FDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGL 530
Query: 319 AGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
+ ++ + MK K+ P L HY C++ GRAG L++A+ MP EPD W +LL
Sbjct: 531 VNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLL 590
Query: 379 SFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEXXXXXXXXXXXX 438
S +H D+ +RL+ + P + AY +AN+ S G+W+E A+
Sbjct: 591 SACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKK 650
Query: 439 EGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDRE 498
E G SWIEVK KVHVF D H +IY + ++ +E +++GYVP +LH++ +
Sbjct: 651 EQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEV 710
Query: 499 KREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISXXXXXXXXXXXX 558
K + L +HSEKLA+AFGL+S P TLRI+KNLR+C DCH + K+IS
Sbjct: 711 KEQILRHHSEKLAIAFGLIS-TPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDT 769
Query: 559 XXYHRFLNGSCTCGDLW 575
+H F +G C+C D W
Sbjct: 770 TRFHHFKDGFCSCRDYW 786
|
|
| TAIR|locus:2125899 AT4G33170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 808 (289.5 bits), Expect = 1.8e-80, P = 1.8e-80
Identities = 179/569 (31%), Positives = 292/569 (51%)
Query: 11 PQNTSTDPRIVHARALK-SSQADRSIYNNLITXXXXXXXXXXXXXXFNHIPSPNIVSWTA 69
P+ S + VH A+K ++ +D + LI F + ++V+W A
Sbjct: 430 PEGLSLSKQ-VHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFER-HNFDLVAWNA 487
Query: 70 LISAHSNSP---LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCXXXXXXXXXXXXXXXXX 126
+++ ++ S +L +F M + S + TLA++FKTC
Sbjct: 488 MMAGYTQSHDGHKTLKLFALMHKQGERS---DDFTLATVFKTCGFLFAINQGKQVHAYAI 544
Query: 127 XXXXXHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSL 186
D + S ++ Y + A+ FD I D V + MI G +N +
Sbjct: 545 KSGYDLDL-WVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAF 603
Query: 187 SVFADMRSSDVGSTMYCVSGXXXXXXXXXXMEQCRVIHGHAVVSGLDRNVIVGTGLIDGY 246
VF+ MR V + ++ +EQ R IH +A+ + VGT L+D Y
Sbjct: 604 HVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMY 663
Query: 247 GKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSF 306
K G + DA +F + + ++N AWNAM+ G AQ G+ L+LF ++ G PD+ +F
Sbjct: 664 AKCGSIDDAYCLF-KRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTF 722
Query: 307 LAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMP 366
+ VL+A ++GL E+ K + M Y ++P +EHY+CL A+GRAG ++ AE + +M
Sbjct: 723 IGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMS 782
Query: 367 FEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAE 426
E A+++R LL+ + G + ++ +L+++ P D SAYV+++N+ + +WDE+
Sbjct: 783 MEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKL 842
Query: 427 XXXXXXXXXXXXEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPV 486
+ G SWIEVK K+H+F+ DR + +TE IY K+ +++ + ++ GYVP
Sbjct: 843 ARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPE 902
Query: 487 WDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYIS 546
D L +V + EK AL+YHSEKLA+AFGL+S P +R++KNLR+C DCH + KYI+
Sbjct: 903 TDFTLVDVEEEEKERALYYHSEKLAVAFGLLS-TPPSTPIRVIKNLRVCGDCHNAMKYIA 961
Query: 547 XXXXXXXXXXXXXXYHRFLNGSCTCGDLW 575
+HRF +G C+CGD W
Sbjct: 962 KVYNREIVLRDANRFHRFKDGICSCGDYW 990
|
|
| TAIR|locus:2149664 MEF1 "mitochondrial RNA editing factor 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 792 (283.9 bits), Expect = 8.7e-79, P = 8.7e-79
Identities = 174/544 (31%), Positives = 278/544 (51%)
Query: 35 IYNNLITXXXXXXXXXXXXXXFNHIPSPNIVSWTALIS--AHSNSP-LSLNIFLSMLRHP 91
+ NNLI F P + +W+++IS A + P +SL FL +
Sbjct: 52 VANNLINFYSKSQLPFDSRRAFEDSPQKSSTTWSSIISCFAQNELPWMSLE-FLKKMMAG 110
Query: 92 TLSFLPNQRTLASLFKTCXXXXXXXXXXXXXXXXXXXXXXHDKPFCGSALVHFYSRFRSP 151
L P+ L S K+C D F GS+LV Y++
Sbjct: 111 NLR--PDDHVLPSATKSCAILSRCDIGRSVHCLSMKTGYDADV-FVGSSLVDMYAKCGEI 167
Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGXXXXX 211
A+K+FDE+ +R+VV + M+ G+AQ ++L +F + ++ Y S
Sbjct: 168 VYARKMFDEMPQRNVVTWSGMMYGYAQMGENEEALWLFKEALFENLAVNDYSFSSVISVC 227
Query: 212 XXXXXMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW 271
+E R IHG ++ S D + VG+ L+ Y K G+ A +VF+E + V N W
Sbjct: 228 ANSTLLELGRQIHGLSIKSSFDSSSFVGSSLVSLYSKCGVPEGAYQVFNE-VPVKNLGIW 286
Query: 272 NAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV 331
NAM+ YAQ V+ELF +++ G P+ +FL VL A +AGL E + ++MK
Sbjct: 287 NAMLKAYAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLNACSHAGLVDEGRYYFDQMK- 345
Query: 332 RYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMAS 391
++EP +HY L+ +GRAGRL++A + MP +P +VW ALL+ +H ++A+
Sbjct: 346 ESRIEPTDKHYASLVDMLGRAGRLQEALEVITNMPIDPTESVWGALLTSCTVHKNTELAA 405
Query: 392 KMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEXXXXXXXXXXXXEGGRSWIEVKGKV 451
++ ++ P ++ ++N + GR+++ A+ E G SW+E + KV
Sbjct: 406 FAADKVFELGPVSSGMHISLSNAYAADGRFEDAAKARKLLRDRGEKKETGLSWVEERNKV 465
Query: 452 HVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLA 511
H F AG+R HE++++IY KLAEL EE E+ GY+ +L V EK + + YHSE+LA
Sbjct: 466 HTFAAGERRHEKSKEIYEKLAELGEEMEKAGYIADTSYVLREVDGDEKNQTIRYHSERLA 525
Query: 512 LAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISXXXXXXXXXXXXXXYHRFLNGSCTC 571
+AFGL++ P + +R++KNLR+C DCH + K++S +HRF +G C+C
Sbjct: 526 IAFGLIT-FPADRPIRVMKNLRVCGDCHNAIKFMSVCTRRVIIVRDNNRFHRFEDGKCSC 584
Query: 572 GDLW 575
D W
Sbjct: 585 NDYW 588
|
|
| TAIR|locus:2205425 AT1G68930 "AT1G68930" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 772 (276.8 bits), Expect = 1.1e-76, P = 1.1e-76
Identities = 169/547 (30%), Positives = 273/547 (49%)
Query: 32 DRS--IYNNLITXXXXXXXXXXXXXXFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLR 89
DR+ +YN+L+ F + + VSW A+I + + L+ + R
Sbjct: 202 DRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDS-VSWAAMIKGLAQNGLAKEA-IECFR 259
Query: 90 HPTLSFLP-NQRTLASLFKTCXXXXXXXXXXXXXXXXXXXXXXHDKPFCGSALVHFYSRF 148
+ L +Q S+ C D + GSAL+ Y +
Sbjct: 260 EMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNF-QDHIYVGSALIDMYCKC 318
Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGXX 208
+ AK VFD +++++VV + AM+VG+ Q R +++ +F DM+ S + Y +
Sbjct: 319 KCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAI 378
Query: 209 XXXXXXXXMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS 268
+E+ HG A+ SGL V V L+ YGK G + D+ R+F+E ++V ++
Sbjct: 379 SACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNE-MNVRDA 437
Query: 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIER 328
++W AM++ YAQ G ++LF + G PD + V++A AGL + +++ +
Sbjct: 438 VSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKL 497
Query: 329 MKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKAD 388
M Y + P + HY+C+I R+GRLE+A R MPF PDA W LLS G +
Sbjct: 498 MTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLE 557
Query: 389 MASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEXXXXXXXXXXXXEGGRSWIEVK 448
+ + LI+++P+ + Y +++++ + G+WD VA+ E G+SWI+ K
Sbjct: 558 IGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWK 617
Query: 449 GKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSE 508
GK+H F A D + IY KL EL + GY P + H+V + K + L YHSE
Sbjct: 618 GKLHSFSADDESSPYLDQIYAKLEELNNKIIDNGYKPDTSFVHHDVEEAVKVKMLNYHSE 677
Query: 509 KLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISXXXXXXXXXXXXXXYHRFLNGS 568
+LA+AFGL+ P G+ +R+ KNLR+C DCH + K+IS +HRF +G+
Sbjct: 678 RLAIAFGLIF-VPSGQPIRVGKNLRVCVDCHNATKHISSVTGREILVRDAVRFHRFKDGT 736
Query: 569 CTCGDLW 575
C+CGD W
Sbjct: 737 CSCGDFW 743
|
|
| TAIR|locus:2032955 AT1G25360 "AT1G25360" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 720 (258.5 bits), Expect = 3.6e-76, Sum P(2) = 3.6e-76
Identities = 147/438 (33%), Positives = 231/438 (52%)
Query: 139 SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG 198
+AL+ Y AK +F E++E++++ + MI G A+N + L +F+ M+
Sbjct: 355 NALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFE 414
Query: 199 STMYCVSGXXXXXXXXXXMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRV 258
Y SG + H + G D ++ G LI Y K G+V +AR+V
Sbjct: 415 PCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQV 474
Query: 259 FDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL 318
F + L+S++WNA++A Q G + ++++ + +G PD + L VLTA +AGL
Sbjct: 475 F-RTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGL 533
Query: 319 AGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
+ K+ + M+ Y++ PG +HY LI + R+G+ DAE + ++PF+P A +W ALL
Sbjct: 534 VDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALL 593
Query: 379 SFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEXXXXXXXXXXXX 438
S +HG ++ +L + P D Y++++N+ + G+W+EVA
Sbjct: 594 SGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKK 653
Query: 439 EGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNV-GDR 497
E SWIE++ +VH FL D H E +Y L +L +E RLGYVP +LH+V D
Sbjct: 654 EVACSWIEMETQVHTFLVDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTSFVLHDVESDG 713
Query: 498 EKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISXXXXXXXXXXX 557
K + L HSEK+A+AFGL+ P G T+RI KNLR C DCH F+++S
Sbjct: 714 HKEDMLTTHSEKIAVAFGLMK-LPPGTTIRIFKNLRTCGDCHNFFRFLSWVVQRDIILRD 772
Query: 558 XXXYHRFLNGSCTCGDLW 575
+H F NG C+CG+ W
Sbjct: 773 RKRFHHFRNGECSCGNFW 790
|
|
| TAIR|locus:2057574 AT2G33760 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 765 (274.4 bits), Expect = 6.3e-76, P = 6.3e-76
Identities = 180/560 (32%), Positives = 275/560 (49%)
Query: 21 VHARALKSSQA-DRSIYNNLITXXXXXXXXXXXXXXFNHIPSPNIVSWTALISAHSNSPL 79
VHA + + RS+ LIT F +P P+ + ++I + S L
Sbjct: 28 VHAHLIVTGYGRSRSLLTKLITLACSARAIAYTHLLFLSVPLPDDFLFNSVIKSTSKLRL 87
Query: 80 SLNIFLSMLRHPTLSFLPNQRTLASLFKTCXXXXXXXXXXXXXXXXXXXXXXHDKPFCGS 139
L+ R + + P+ T S+ K+C D + +
Sbjct: 88 PLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLDT-YVQA 146
Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
ALV FYS+ + A++VFD + E+ +V + +++ GF QN +++ VF MR S
Sbjct: 147 ALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEP 206
Query: 200 TMYCVSGXXXXXXXXXXMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
+ +H + + GLD NV +GT LI+ Y + G V AR VF
Sbjct: 207 DSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGDVGKAREVF 266
Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR-GFAPDEYSFLAVLTALCNAGL 318
D+ + N AW AM++ Y G +ELF+ +E G P+ +F+AVL+A +AGL
Sbjct: 267 DK-MKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVAVLSACAHAGL 325
Query: 319 AGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDA---AVWR 375
E +RM Y+L PG+EH+ C++ +GRAG L++A + + A A+W
Sbjct: 326 VEEGRSVYKRMTKSYRLIPGVEHHVCMVDMLGRAGFLDEAYKFIHQLDATGKATAPALWT 385
Query: 376 ALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEXXXXXXXXX 435
A+L +H D+ ++ KRLI + P + +V+++N+ + G+ DEV+
Sbjct: 386 AMLGACKMHRNYDLGVEIAKRLIALEPDNPGHHVMLSNIYALSGKTDEVSHIRDGMMRNN 445
Query: 436 XXXEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVG 495
+ G S IEV+ K ++F GD H+ T +IY L L+ C+ +GY PV +E++H V
Sbjct: 446 LRKQVGYSVIEVENKTYMFSMGDESHQETGEIYRYLETLISRCKEIGYAPVSEEVMHQVE 505
Query: 496 DREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISXXXXXXXXX 555
+ EK AL YHSEKLA+AFGL+ T IVKNLRIC DCH +FKYIS
Sbjct: 506 EEEKEFALRYHSEKLAVAFGLLKTVDVAIT--IVKNLRICEDCHSAFKYISIVSNRQITV 563
Query: 556 XXXXXYHRFLNGSCTCGDLW 575
+H F NGSC+C D W
Sbjct: 564 RDKLRFHHFQNGSCSCLDYW 583
|
|
| TAIR|locus:2140235 AT4G02750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 727 (261.0 bits), Expect = 3.2e-75, Sum P(2) = 3.2e-75
Identities = 138/437 (31%), Positives = 228/437 (52%)
Query: 139 SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG 198
+ ++ Y++ AK +FD++ +RD V + AMI G++Q+ ++L +F M
Sbjct: 347 NTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGR 406
Query: 199 STMYCVSGXXXXXXXXXXMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRV 258
S +E + +HG V G + VG L+ Y K G + +A +
Sbjct: 407 LNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDL 466
Query: 259 FDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL 318
F E ++ + ++WN M+AGY++ G L F ++ G PD+ + +AVL+A + GL
Sbjct: 467 FKE-MAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGL 525
Query: 319 AGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
+ ++ M Y + P +HY C++ +GRAG LEDA + MPFEPDAA+W LL
Sbjct: 526 VDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLL 585
Query: 379 SFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEXXXXXXXXXXXX 438
S +HG ++A ++ + P + YV+++N+ + GRW +V +
Sbjct: 586 GASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKK 645
Query: 439 EGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDRE 498
G SWIE++ K H F GD H ++I+ L EL ++ GYV +LH+V + E
Sbjct: 646 VPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEEE 705
Query: 499 KREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISXXXXXXXXXXXX 558
K + YHSE+LA+A+G++ G+ +R++KNLR+C DCH + KY++
Sbjct: 706 KERMVRYHSERLAVAYGIMR-VSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRDN 764
Query: 559 XXYHRFLNGSCTCGDLW 575
+H F +GSC+CGD W
Sbjct: 765 NRFHHFKDGSCSCGDYW 781
|
|
| TAIR|locus:2151501 AT5G46460 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 715 (256.8 bits), Expect = 5.2e-75, Sum P(2) = 5.2e-75
Identities = 159/549 (28%), Positives = 270/549 (49%)
Query: 32 DRSIYNNLITXXXXXXXXXXXXXXFNHIPSPNIVSWTALISA---HSNSPLSLNIFLSML 88
D + +N+++ F +P N++SWT +I + S +L++F +ML
Sbjct: 158 DTAAWNSMVHGYLQFGKVDDALKLFKQMPGKNVISWTTMICGLDQNERSGEALDLFKNML 217
Query: 89 RHPTLSFLPNQRTLASLFKTCXXXXXXXXXXXXXXXXXXXXXXHDKPFCGSALVHFYSRF 148
R S R + C +++ + ++L+ FY+
Sbjct: 218 RCCIKS---TSRPFTCVITACANAPAFHMGIQVHGLIIKLGFLYEE-YVSASLITFYANC 273
Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM-RSSDVGSTMYCVSGX 207
+ +++KVFDE V + A++ G++ N + D+LS+F+ M R+S + + SG
Sbjct: 274 KRIGDSRKVFDEKVHEQVAVWTALLSGYSLNKKHEDALSIFSGMLRNSILPNQSTFASGL 333
Query: 208 XXXXXXXXXMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN 267
++ + +HG AV GL+ + VG L+ Y +G V+DA VF + + +
Sbjct: 334 NSCSALGT-LDWGKEMHGVAVKLGLETDAFVGNSLVVMYSDSGNVNDAVSVFIK-IFKKS 391
Query: 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIE 327
++WN+++ G AQ G +F + PDE +F +L+A + G + K
Sbjct: 392 IVSWNSIIVGCAQHGRGKWAFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLEKGRKLFY 451
Query: 328 RMKVRYK-LEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGK 386
M ++ ++HYTC++ +GR G+L++AE + M +P+ VW ALLS +H
Sbjct: 452 YMSSGINHIDRKIQHYTCMVDILGRCGKLKEAEELIERMVVKPNEMVWLALLSACRMHSD 511
Query: 387 ADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEXXXXXXXXXXXXEGGRSWIE 446
D K + +++ +AYV+++N+ + GRW V++ + G SW+
Sbjct: 512 VDRGEKAAAAIFNLDSKSSAAYVLLSNIYASAGRWSNVSKLRVKMKKNGIMKKPGSSWVV 571
Query: 447 VKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYH 506
++GK H F +GD+ H IY KL L E+ + LGY P + LH+V D +K E LWYH
Sbjct: 572 IRGKKHEFFSGDQPH--CSRIYEKLEFLREKLKELGYAPDYRSALHDVEDEQKEEMLWYH 629
Query: 507 SEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISXXXXXXXXXXXXXXYHRFLN 566
SE+LA+AFGL++ G + ++KNLR+C DCH K IS +H F N
Sbjct: 630 SERLAIAFGLINTV-EGSAVTVMKNLRVCEDCHTVIKLISGVVGREIVLRDPIRFHHFKN 688
Query: 567 GSCTCGDLW 575
G+C+CGD W
Sbjct: 689 GTCSCGDYW 697
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| TAIR|locus:2078653 AT3G02010 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 706 (253.6 bits), Expect = 2.3e-74, Sum P(2) = 2.3e-74
Identities = 161/562 (28%), Positives = 269/562 (47%)
Query: 21 VHARALKSS-QADRSIYNNLITXXXXXXXXXXXXXXFNHIPSPNIVSWTALISAHSNSP- 78
+HA ++ + D S+ N ++ F+ +P + VS+ +IS++S +
Sbjct: 272 LHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQ 331
Query: 79 --LSLNIFLSM--LRHPTLSFLPNQRTLASLFKTCXXXXXXXXXXXXXXXXXXXXXXHDK 134
SL+ F M + +F P T+ S+ H
Sbjct: 332 YEASLHFFREMQCMGFDRRNF-PFA-TMLSIAANLSSLQMGRQLHCQALLATADSILH-- 387
Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
G++LV Y++ + A+ +F + +R V + A+I G+ Q L +F MR
Sbjct: 388 --VGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRG 445
Query: 195 SDVGSTMYCVSGXXXXXXXXXXMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
S++ + + + + +H + SG NV G+GL+D Y K G + D
Sbjct: 446 SNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKD 505
Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
A +VF+E + N+++WNA+++ +A GD + F + G PD S L VLTA
Sbjct: 506 AVQVFEE-MPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACS 564
Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
+ G + ++ + M Y + P +HY C++ +GR GR +AE++ MPFEPD +W
Sbjct: 565 HCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMW 624
Query: 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSA-YVIVANVLSGVGRWDEVAEXXXXXXX 433
++L+ IH +A + ++L + D+A YV ++N+ + G W++V +
Sbjct: 625 SSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRE 684
Query: 434 XXXXXEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHN 493
SW+EV K+HVF + D+ H ++I K+ EL E ER GY P ++ +
Sbjct: 685 RGIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVRKINELTAEIEREGYKPDTSSVVQD 744
Query: 494 VGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISXXXXXXX 553
V ++ K E+L YHSE+LA+AF L+S P G + ++KNLR CRDCH + K IS
Sbjct: 745 VDEQMKIESLKYHSERLAVAFALIS-TPEGCPIVVMKNLRACRDCHAAIKLISKIVKREI 803
Query: 554 XXXXXXXYHRFLNGSCTCGDLW 575
+H F G C+CGD W
Sbjct: 804 TVRDTSRFHHFSEGVCSCGDYW 825
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| TAIR|locus:2082886 EMB2261 "embryo defective 2261" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 743 (266.6 bits), Expect = 1.4e-73, P = 1.4e-73
Identities = 159/530 (30%), Positives = 261/530 (49%)
Query: 56 FNHIPSPNIVSWTALISAH-SNSPLS---LNIFLSMLRHPTLSFLPNQRTLASLFKTCXX 111
F+ + +++SWTALI+ + N L+ +N+F M+ + PN T +S FK C
Sbjct: 328 FDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVE--PNHFTFSSAFKACGN 385
Query: 112 XXXXXXXXXXXXXXXXXXXXHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGA 171
+ S + F R D A++ F+ + E+++V Y
Sbjct: 386 LSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMED-AQRAFESLSEKNLVSYNT 444
Query: 172 MIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGXXXXXXXXXXMEQCRVIHGHAVVSG 231
+ G +N + + +++ ++G + + + + + IH V G
Sbjct: 445 FLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLG 504
Query: 232 LDRNVIVGTGLIDGYGKAGIVSDARRVFD--ENLSVLNSIAWNAMMAGYAQQGDQSTVLE 289
L N V LI Y K G + A RVF+ EN +V I+W +M+ G+A+ G VLE
Sbjct: 505 LSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNV---ISWTSMITGFAKHGFAIRVLE 561
Query: 290 LFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAM 349
F+ + G P+E +++A+L+A + GL E + M +K++P +EHY C++ +
Sbjct: 562 TFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLL 621
Query: 350 GRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYV 409
RAG L DA MPF+ D VWR L +H ++ +++++++P + +AY+
Sbjct: 622 CRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYI 681
Query: 410 IVANVLSGVGRWDEVAEXXXXXXXXXXXXEGGRSWIEVKGKVHVFLAGDRMHERTEDIYT 469
++N+ + G+W+E E EGG SWIEV K+H F GD H IY
Sbjct: 682 QLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYD 741
Query: 470 KLAELMEECERLGYVPVWDEMLHNVGDR----EKREALWYHSEKLALAFGLVSGAPRGKT 525
+L L+ E +R GYVP D +LH + + EK L+ HSEK+A+AFGL+S + + +
Sbjct: 742 ELDRLITEIKRCGYVPDTDLVLHKLEEENDEAEKERLLYQHSEKIAVAFGLISTS-KSRP 800
Query: 526 LRIVKNLRICRDCHESFKYISXXXXXXXXXXXXXXYHRFLNGSCTCGDLW 575
+R+ KNLR+C DCH + KYIS +H F +G C+C D W
Sbjct: 801 VRVFKNLRVCGDCHNAMKYISTVSGREIVLRDLNRFHHFKDGKCSCNDYW 850
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00024707001 | SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (587 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 575 | |||
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-115 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-106 | |
| pfam14432 | 116 | pfam14432, DYW_deaminase, DYW family of nucleic ac | 6e-23 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-20 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-08 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 9e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.003 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 356 bits (916), Expect = e-115
Identities = 180/547 (32%), Positives = 299/547 (54%), Gaps = 9/547 (1%)
Query: 32 DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSNSPLSLNIFLSML 88
D+ + N ++ + K +L + RLF+ +P N+ SW +I N + +F M
Sbjct: 157 DQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMW 216
Query: 89 RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
+ RT + + A L A G LH LK + F AL+ YS+
Sbjct: 217 EDGSD---AEPRTFVVMLRASAGLGSARA-GQQLHCCVLKTGVVGDTFVSCALIDMYSKC 272
Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGAL 208
++A+ VFD + E+ V + +M+ G+A + ++L ++ +MR S V + S +
Sbjct: 273 GDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMI 332
Query: 209 RAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS 268
R + LA +E + H + +G +++ T L+D Y K G + DAR VFD + N
Sbjct: 333 RIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDR-MPRKNL 391
Query: 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIER 328
I+WNA++AGY G + +E+F + G AP+ +FLAVL+A +GL+ + + +
Sbjct: 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQS 451
Query: 329 MKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKAD 388
M ++++P HY C+I +GR G L++A + PF+P +W ALL+ IH +
Sbjct: 452 MSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLE 511
Query: 389 MASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVK 448
+ ++L + P + YV++ N+ + GR E A+V + +K + + +WIEVK
Sbjct: 512 LGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVK 571
Query: 449 GKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSE 508
+ H F +GDR+H ++ +IY KL ELM+E GYV +E+L +V + E++ + YHSE
Sbjct: 572 KQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSE 631
Query: 509 KLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGS 568
KLA+AFGL++ + L+I ++ RIC+DCH+ K+I+ V +REIVVRD +R+H F G
Sbjct: 632 KLAIAFGLINTSEW-TPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGK 690
Query: 569 CTCGDLW 575
C+CGD W
Sbjct: 691 CSCGDYW 697
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 338 bits (868), Expect = e-106
Identities = 177/559 (31%), Positives = 304/559 (54%), Gaps = 13/559 (2%)
Query: 19 RIVHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
R +H +K+ A D S+ N+LI Y + ++F+ + + + VSWTA+IS + +
Sbjct: 308 REMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKN 367
Query: 78 PL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
L +L + M + + P++ T+AS+ CA L G+ LH L+ + L
Sbjct: 368 GLPDKALETYALMEQD---NVSPDEITIASVLSACACLGD-LDVGVKLHELAERKGLISY 423
Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
+AL+ YS+ + D A +VF I E+DV+ + ++I G N+R ++L F M
Sbjct: 424 VVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL 483
Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
+ +++ ++ AL A A + A+ + IH H + +G+ + + L+D Y + G ++
Sbjct: 484 TLKPNSVTLIA-ALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNY 542
Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
A F N + ++WN ++ GY G S +ELF+ + G PDE +F+++L A
Sbjct: 543 AWNQF--NSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACS 600
Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
+G+ + ++ M+ +Y + P L+HY C++ +GRAG+L +A MP PD AVW
Sbjct: 601 RSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVW 660
Query: 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
ALL+ IH ++ + + +++P Y+++ N+ + G+WDEVA VRK M++
Sbjct: 661 GALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMREN 720
Query: 435 RVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNV 494
+ + G SW+EVKGKVH FL D H + ++I T L E+ + G + +
Sbjct: 721 GLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDEI 780
Query: 495 GDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIV 554
+ K + HSE+LA+AFGL++ P G + + KNL +C +CH + K+IS++V REI
Sbjct: 781 -EVSKDDIFCGHSERLAIAFGLINTVP-GMPIWVTKNLYMCENCHNTVKFISKIVRREIS 838
Query: 555 VRDVNRYHRFLNGSCTCGD 573
VRD ++H F +G C+CGD
Sbjct: 839 VRDTEQFHHFKDGECSCGD 857
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Length = 857 |
| >gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Score = 93.6 bits (233), Expect = 6e-23
Identities = 51/132 (38%), Positives = 68/132 (51%), Gaps = 24/132 (18%)
Query: 440 GGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREK 499
G W E K L+GD H T EL + + G VP E+ H+V E
Sbjct: 1 PGCVWSEGK----KTLSGDGSHP------TSKEELFQRIKVEGVVPETKEIGHDVDAEEF 50
Query: 500 RE------ALWYHSEKLALAFGLVSGAPRGKTLRIVKNL-RICRDCHESFKYISRVVERE 552
R+ L H+EK ALA+GL+ T RI+K L R+C DCHE F+YI++ RE
Sbjct: 51 RDNGIKGKLLASHAEKQALAYGLL-------TTRIIKVLKRMCGDCHEFFRYIAKYTGRE 103
Query: 553 IVVRDVNRYHRF 564
I+VRD +R+H F
Sbjct: 104 IIVRDPSRFHHF 115
|
A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 94.9 bits (236), Expect = 3e-20
Identities = 73/302 (24%), Positives = 138/302 (45%), Gaps = 9/302 (2%)
Query: 21 VHARALKS-SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
V +RAL S + N +++ + + L ++ +F +P ++ SW L+ ++ +
Sbjct: 108 VCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGY 167
Query: 80 ---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
+L ++ ML P+ T + +TC + G +H+ ++
Sbjct: 168 FDEALCLYHRML---WAGVRPDVYTFPCVLRTCGGIPD-LARGREVHAHVVRFGFELDVD 223
Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
+AL+ Y + +A+ VFD + RD + + AMI G+ +N ++ L +F MR
Sbjct: 224 VVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELS 283
Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
V + ++ + A L R +HG+ V +G +V V LI Y G +A
Sbjct: 284 VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAE 343
Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
+VF + ++++W AM++GY + G LE + L+E +PDE + +VL+A
Sbjct: 344 KVFSR-METKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACL 402
Query: 317 GL 318
G
Sbjct: 403 GD 404
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Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.9 bits (118), Expect = 6e-08
Identities = 13/49 (26%), Positives = 29/49 (59%)
Query: 267 NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
+ + +N ++ GY ++G L+LF+ ++ RG P+ Y++ ++ LC
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 9e-04
Identities = 35/195 (17%), Positives = 82/195 (42%), Gaps = 4/195 (2%)
Query: 165 DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIH 224
D + GA++ A ++ + V+ + ++ T + A+ + ++ + I+
Sbjct: 578 DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIY 637
Query: 225 GHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSV---LNSIAWNAMMAGYAQQ 281
G+ + + + L+D G AG + A + + L +++++++M +
Sbjct: 638 DDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNA 697
Query: 282 GDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEH 341
+ LEL+ ++ P + A++TALC ++ + + MK R L P
Sbjct: 698 KNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMK-RLGLCPNTIT 756
Query: 342 YTCLISAMGRAGRLE 356
Y+ L+ A R +
Sbjct: 757 YSILLVASERKDDAD 771
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Length = 1060 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 35.0 bits (82), Expect = 0.003
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 230 SGLDRNVIVGTGLIDGYGKAGIVSDARRVFDE 261
GL +V+ LIDG +AG V +A + DE
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 575 | |||
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.95 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.95 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 99.93 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.86 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.85 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.85 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.83 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.82 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.81 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.8 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.78 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.78 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.78 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.75 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.75 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.71 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.7 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.69 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.64 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.63 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.55 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.51 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.48 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.47 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.45 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.44 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.43 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.42 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.39 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.39 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.38 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.38 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.37 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.37 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.37 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.36 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.35 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.35 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.32 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.32 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.32 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.32 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.27 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.26 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.24 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.24 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.24 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.23 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.2 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.2 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.18 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.14 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.12 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.11 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.1 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.08 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.07 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.06 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.05 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.0 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.95 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 98.95 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.94 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.94 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.9 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.88 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.85 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.79 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 98.79 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.78 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.75 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.73 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.72 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.71 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.71 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.71 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.68 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.65 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.61 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.6 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.6 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.59 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.56 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.55 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.52 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.51 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.5 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.49 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.47 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.46 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.43 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.42 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.41 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.39 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.38 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.36 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.33 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.33 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.32 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.3 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.28 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.26 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.26 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.25 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.25 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.24 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.2 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.19 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.19 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.17 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.15 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.14 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.13 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.12 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.12 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.11 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.1 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.08 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.0 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.99 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 97.98 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 97.95 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.94 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.94 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.91 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.9 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.9 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 97.88 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.88 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.87 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.87 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.86 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.8 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.69 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.67 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.66 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.65 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 97.61 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.6 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.56 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.56 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.51 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.51 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.5 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.48 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.48 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.43 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.42 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.42 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.39 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.35 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.32 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.28 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.27 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.27 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.26 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.26 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.24 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.24 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.23 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.22 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.2 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.16 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.14 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.11 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.11 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.08 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.06 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.04 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.0 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.99 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.98 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.98 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.97 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.96 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.95 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.95 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.9 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.84 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.83 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.79 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.75 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.72 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.69 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.65 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.64 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.63 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.62 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.57 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.57 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.55 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.55 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.51 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.45 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.36 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.34 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 96.34 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.31 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.3 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.29 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.28 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.21 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.09 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.02 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.99 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.98 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 95.97 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.91 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.76 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.66 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.43 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.4 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.4 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.37 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.29 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.04 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 94.96 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 94.96 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 94.91 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 94.73 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.67 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 94.42 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 94.22 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 94.22 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.17 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.15 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 94.1 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.09 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.06 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.06 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 93.96 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.49 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 93.48 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 93.43 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.38 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.22 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.2 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.17 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.15 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.12 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 93.1 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 92.95 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.91 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 92.91 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 92.82 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 92.73 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 92.69 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 92.6 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 92.56 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 92.53 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 92.34 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 92.32 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 92.02 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.53 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 91.38 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 91.14 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 91.09 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 91.07 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.05 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 90.73 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 90.62 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 90.25 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 90.11 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 90.0 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 89.63 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 89.58 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 89.1 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 88.63 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 88.26 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 88.0 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 87.98 | |
| PRK09687 | 280 | putative lyase; Provisional | 87.95 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 87.93 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 87.89 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 87.84 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 87.84 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 87.66 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 87.42 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 87.38 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 86.95 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 86.9 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 86.48 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 86.38 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 86.23 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 85.75 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 85.32 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 85.28 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 85.16 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 85.15 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 85.03 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 84.64 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 84.64 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 84.3 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 84.03 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 83.73 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 83.54 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 83.24 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 82.96 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 82.74 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 82.65 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 82.61 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 81.59 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 81.25 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 81.19 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 80.83 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 80.05 |
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-113 Score=928.74 Aligned_cols=563 Identities=32% Similarity=0.581 Sum_probs=553.3
Q ss_pred cCCCCCCCCccHHHHHHHHHhhCC-CcccHHHHHHHHhHcCCChHHHHHHHccCCCCChhhHHHHHHHHhcCch---HHH
Q 008183 7 QQPQPQNTSTDPRIVHARALKSSQ-ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLN 82 (575)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~---a~~ 82 (575)
..+...+....++++|..+.+.|+ ||+.+||.|+++|+++|++++|+++|++|++||+++||++|.+|++.|+ |++
T Consensus 131 ~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~ 210 (697)
T PLN03081 131 EACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFA 210 (697)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHH
Confidence 344556778889999999999999 9999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHhhCCCCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcC
Q 008183 83 IFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIR 162 (575)
Q Consensus 83 ~~~~m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 162 (575)
+|++|.+.| ..||..||+.++.+|++.+ ..+.++++|..+.+.|+.+|..++|+||++|+++|++++|.++|++|+
T Consensus 211 lf~~M~~~g---~~p~~~t~~~ll~a~~~~~-~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~ 286 (697)
T PLN03081 211 LFREMWEDG---SDAEPRTFVVMLRASAGLG-SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP 286 (697)
T ss_pred HHHHHHHhC---CCCChhhHHHHHHHHhcCC-cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 999999999 9999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHH
Q 008183 163 ERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGL 242 (575)
Q Consensus 163 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 242 (575)
++|+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|++++|.++|..|.+.|++||..++|+|
T Consensus 287 ~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~L 366 (697)
T PLN03081 287 EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTAL 366 (697)
T ss_pred CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008183 243 IDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGES 322 (575)
Q Consensus 243 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 322 (575)
|++|+++|++++|.++|++ |.++|+.+||+||.+|+++|+.++|+++|++|.+.|+.||.+||+++|.+|++.|++++|
T Consensus 367 i~~y~k~G~~~~A~~vf~~-m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a 445 (697)
T PLN03081 367 VDLYSKWGRMEDARNVFDR-MPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQG 445 (697)
T ss_pred HHHHHHCCCHHHHHHHHHh-CCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHH
Confidence 9999999999999999999 888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 008183 323 EKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINP 402 (575)
Q Consensus 323 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 402 (575)
.++|+.|..++|+.|+..+|++++++|++.|++++|.+++++|++.|+..+|++|+.+|..+|+++.|..+++++.+.+|
T Consensus 446 ~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p 525 (697)
T PLN03081 446 WEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGP 525 (697)
T ss_pred HHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCC
Confidence 99999998788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHhCCCchHHHHHHHHHhhCCCccCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcC
Q 008183 403 YDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLG 482 (575)
Q Consensus 403 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g 482 (575)
.+..+|+.|+++|++.|+|++|.+++++|+++|+++.|++||+++++.+|.|++++..||+.+++++.+.++..+|++.|
T Consensus 526 ~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g 605 (697)
T PLN03081 526 EKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYG 605 (697)
T ss_pred CCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCccccccChHHhhhhHHHHHHHHHHHHhhhcCCCCCCcEEEEccccccCCcchhhHhhhhhcCceEEeecCCccC
Q 008183 483 YVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYH 562 (575)
Q Consensus 483 ~~p~~~~~~~~~~~~~~~~~~~~h~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~d~~~~h 562 (575)
|.||+..+++++++++++..+.+|||+||++|||+ .+|++.+|+|+||+|+|||||+|+|+||++.+|+|||||.+|||
T Consensus 606 y~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~-~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh 684 (697)
T PLN03081 606 YVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLI-NTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFH 684 (697)
T ss_pred CCCCcchhhccccHHHHHHHHHhccHHHHHHhhCc-cCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccc
Confidence 99999999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred cccCccccCCCCC
Q 008183 563 RFLNGSCTCGDLW 575 (575)
Q Consensus 563 ~~~~g~~~c~~~~ 575 (575)
||++|+|||+|||
T Consensus 685 ~f~~g~csc~d~w 697 (697)
T PLN03081 685 HFKLGKCSCGDYW 697 (697)
T ss_pred cCCCCcccccccC
Confidence 9999999999999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-107 Score=902.96 Aligned_cols=559 Identities=31% Similarity=0.584 Sum_probs=546.2
Q ss_pred ccCCCCCCCCccHHHHHHHHHhhCC-CcccHHHHHHHHhHcCCChHHHHHHHccCCCCChhhHHHHHHHHhcCch---HH
Q 008183 6 NQQPQPQNTSTDPRIVHARALKSSQ-ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SL 81 (575)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~---a~ 81 (575)
+..+...+..+.|+++|..+.+.|+ ||..+||+||.+|+++|++++|.++|++|++||+++||+||.+|++.|+ |+
T Consensus 295 l~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~ 374 (857)
T PLN03077 295 ISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKAL 374 (857)
T ss_pred HHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHH
Confidence 3445567788999999999999999 9999999999999999999999999999999999999999999999999 99
Q ss_pred HHHHHHhhCCCCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhc
Q 008183 82 NIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEI 161 (575)
Q Consensus 82 ~~~~~m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m 161 (575)
++|++|.+.| +.||..||++++.+|++.| +++.|.++|+.+.+.|+.|+..++|+||++|+++|++++|.++|++|
T Consensus 375 ~lf~~M~~~g---~~Pd~~t~~~ll~a~~~~g-~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m 450 (857)
T PLN03077 375 ETYALMEQDN---VSPDEITIASVLSACACLG-DLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNI 450 (857)
T ss_pred HHHHHHHHhC---CCCCceeHHHHHHHHhccc-hHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 9999999999 9999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHH
Q 008183 162 RERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTG 241 (575)
Q Consensus 162 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 241 (575)
.++|+++||+||.+|+++|+.++|+++|++|.. +++||..||+++|.+|++.|+++.+.++|..+.+.|+.+|..++|+
T Consensus 451 ~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~na 529 (857)
T PLN03077 451 PEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNA 529 (857)
T ss_pred CCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechH
Confidence 999999999999999999999999999999986 6999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 008183 242 LIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGE 321 (575)
Q Consensus 242 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 321 (575)
||++|+++|++++|.++|+. + .+|+.+||+||.+|+++|+.++|+++|++|.+.|+.||.+||+.+|.+|++.|++++
T Consensus 530 Li~~y~k~G~~~~A~~~f~~-~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~e 607 (857)
T PLN03077 530 LLDLYVRCGRMNYAWNQFNS-H-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQ 607 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHh-c-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHH
Confidence 99999999999999999999 6 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 008183 322 SEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDIN 401 (575)
Q Consensus 322 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 401 (575)
|.++|+.|..++|+.|+..+|++++++|++.|++++|.+++++|+++||..+|++|+.+|..+|+.+.|+.+.+++.+++
T Consensus 608 a~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~ 687 (857)
T PLN03077 608 GLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELD 687 (857)
T ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Confidence 99999999768999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCCCccCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHc
Q 008183 402 PYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERL 481 (575)
Q Consensus 402 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~ 481 (575)
|.+...|..|.++|+..|+|++|.++++.|+++|++|+|++||+++++++|.|.+++.+||+.++++..++++..+|++.
T Consensus 688 p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~ 767 (857)
T PLN03077 688 PNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKAS 767 (857)
T ss_pred CCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCccccccChHHhhhhHHHHHHHHHHHHhhhcCCCCCCcEEEEccccccCCcchhhHhhhhhcCceEEeecCCcc
Q 008183 482 GYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRY 561 (575)
Q Consensus 482 g~~p~~~~~~~~~~~~~~~~~~~~h~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~d~~~~ 561 (575)
||.||+..++ +.++++|+..+++|||+||++|||+ .+|+++||+|+||+|+|||||+|+|+||++.+|+|||||.+||
T Consensus 768 g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~-~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rf 845 (857)
T PLN03077 768 GLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLI-NTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQF 845 (857)
T ss_pred CcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhh-cCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcc
Confidence 9999998877 5577889999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred CcccCccccCCC
Q 008183 562 HRFLNGSCTCGD 573 (575)
Q Consensus 562 h~~~~g~~~c~~ 573 (575)
|||++|+|||+|
T Consensus 846 h~f~~g~csc~d 857 (857)
T PLN03077 846 HHFKDGECSCGD 857 (857)
T ss_pred eeCCCCcccCCC
Confidence 999999999998
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-74 Score=632.92 Aligned_cols=542 Identities=19% Similarity=0.289 Sum_probs=474.4
Q ss_pred CCCCCCCCccHHHHHHHHHhhCC-CcccHHHHHHHHhHcCCChHHHHHHHccCCCCChhhHHHHHHHHhcCch---HHHH
Q 008183 8 QPQPQNTSTDPRIVHARALKSSQ-ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNI 83 (575)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~---a~~~ 83 (575)
.+...+....|.++|..+.+.|+ +++.++|+||.+|+++|+++.|+++|++|++||+++||++|.+|++.|+ |+++
T Consensus 95 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~ 174 (857)
T PLN03077 95 LCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCL 174 (857)
T ss_pred HHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHH
Confidence 34456678889999999999999 9999999999999999999999999999999999999999999999998 9999
Q ss_pred HHHHhhCCCCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCC
Q 008183 84 FLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE 163 (575)
Q Consensus 84 ~~~m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~ 163 (575)
|++|...| +.||.+||+++|++|+..+ ++..+.++|..+.+.|+.||+.++|+||++|+++|++++|.++|++|++
T Consensus 175 f~~M~~~g---~~Pd~~t~~~ll~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~ 250 (857)
T PLN03077 175 YHRMLWAG---VRPDVYTFPCVLRTCGGIP-DLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR 250 (857)
T ss_pred HHHHHHcC---CCCChhHHHHHHHHhCCcc-chhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC
Confidence 99999999 9999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 008183 164 RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLI 243 (575)
Q Consensus 164 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 243 (575)
||+++||+||.+|++.|++++|+++|.+|...|+.||..||+.++.+|++.|+++.|.+++..+.+.|+.||..+||+||
T Consensus 251 ~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li 330 (857)
T PLN03077 251 RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLI 330 (857)
T ss_pred CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008183 244 DGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESE 323 (575)
Q Consensus 244 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 323 (575)
++|+++|++++|.++|++ |..||.++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.
T Consensus 331 ~~y~k~g~~~~A~~vf~~-m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~ 409 (857)
T PLN03077 331 QMYLSLGSWGEAEKVFSR-METKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGV 409 (857)
T ss_pred HHHHhcCCHHHHHHHHhh-CCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHH
Confidence 999999999999999999 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 008183 324 KWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPY 403 (575)
Q Consensus 324 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 403 (575)
++++.+ .+.|+.|+..+|++||++|+++|++++|.++|++|+ +||..+|+++|.+|.+.|+.++|..+|++|.+.-++
T Consensus 410 ~l~~~~-~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~p 487 (857)
T PLN03077 410 KLHELA-ERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKP 487 (857)
T ss_pred HHHHHH-HHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCC
Confidence 999999 677999999999999999999999999999999997 789999999999999999999999999999864455
Q ss_pred CchhHHHHHHHHHhCCCchHHHHHHHHHhhCCCccC-----------------------------CceeEEEECCEEEEE
Q 008183 404 DDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKE-----------------------------GGRSWIEVKGKVHVF 454 (575)
Q Consensus 404 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~-----------------------------~~~s~~~~~~~~~~~ 454 (575)
|..+|..++.+|++.|.++.+.+++..|.+.|+.++ ..++|+ .+
T Consensus 488 d~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n-------~l 560 (857)
T PLN03077 488 NSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWN-------IL 560 (857)
T ss_pred CHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHH-------HH
Confidence 656666555444444444444444444444333322 224565 35
Q ss_pred EeCCCCCcchHHHHHHHHHHHHHHHHcCCccCCCccccccChHHhhhhH---HHHHHHHHHHHhhhcCCCCCCcEEEEcc
Q 008183 455 LAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREAL---WYHSEKLALAFGLVSGAPRGKTLRIVKN 531 (575)
Q Consensus 455 ~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~---~~h~~~l~~~~~~~~~~~~~~~~~~~~~ 531 (575)
+.++..++..+++. +++++|++.|+.||..++...+..+.+.+.+ ....+.+...+|+. |...... ++++.
T Consensus 561 I~~~~~~G~~~~A~----~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~-P~~~~y~-~lv~~ 634 (857)
T PLN03077 561 LTGYVAHGKGSMAV----ELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSIT-PNLKHYA-CVVDL 634 (857)
T ss_pred HHHHHHcCCHHHHH----HHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCC-CchHHHH-HHHHH
Confidence 67777788877766 6788999999999998876555544433322 22334555567876 6554544 67999
Q ss_pred ccccCCcchhhHhhhhhcCc------eEEeecCCccCcccCccc
Q 008183 532 LRICRDCHESFKYISRVVER------EIVVRDVNRYHRFLNGSC 569 (575)
Q Consensus 532 ~~~~~~~~~a~~~~~~~~~~------~~~~~d~~~~h~~~~g~~ 569 (575)
|.++|+.++|.++|.+|+.+ ..++..|+.+.+.+.|+.
T Consensus 635 l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~ 678 (857)
T PLN03077 635 LGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGEL 678 (857)
T ss_pred HHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHH
Confidence 99999999999999999743 345566766666666654
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-63 Score=540.06 Aligned_cols=507 Identities=15% Similarity=0.191 Sum_probs=396.9
Q ss_pred CcccHHHHHHHHhHcCCChHHHHHHHccCCCCChh-----hHHHHHHHHhcCch---HHHHHHHHhhCCCCCcCCChhhH
Q 008183 31 ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIV-----SWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTL 102 (575)
Q Consensus 31 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~-----~~~~li~~~~~~g~---a~~~~~~m~~~~~~~~~p~~~t~ 102 (575)
++...|..++..++++|++++|+++|++|+.++.. .++.++.+|.+.|. |+++|+.|. .||..||
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~-------~pd~~Ty 440 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR-------NPTLSTF 440 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC-------CCCHHHH
Confidence 77788888888888889999999999888755444 45566677887777 888887774 3888899
Q ss_pred HHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcC----CCCcchHHHHHHHHHh
Q 008183 103 ASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIR----ERDVVCYGAMIVGFAQ 178 (575)
Q Consensus 103 ~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~ 178 (575)
+.+|.+|++.| +++.|.++|+.|.+.|+.||..+|++||++|+++|++++|.++|++|. .||.++||+||.+|++
T Consensus 441 n~LL~a~~k~g-~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k 519 (1060)
T PLN03218 441 NMLMSVCASSQ-DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR 519 (1060)
T ss_pred HHHHHHHHhCc-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 99999998888 888999999999888888899999999999999999999999998887 4788899999999999
Q ss_pred CCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCCCchhHHHHHHHHHHccCCHHHHH
Q 008183 179 NSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVV--SGLDRNVIVGTGLIDGYGKAGIVSDAR 256 (575)
Q Consensus 179 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~ 256 (575)
.|++++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+ .|+.||..+|++||.+|+++|++++|.
T Consensus 520 ~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~ 599 (1060)
T PLN03218 520 AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999998888889999999999999999999999999988876 578888889999999999999999999
Q ss_pred HHHhhhCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 008183 257 RVFDENLS---VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRY 333 (575)
Q Consensus 257 ~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 333 (575)
++|+.|.. .|+..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|+.| .+.
T Consensus 600 elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM-~k~ 678 (1060)
T PLN03218 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDA-RKQ 678 (1060)
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH-HHc
Confidence 99888333 56778899999999999999999999999988888899999999999999999999999999888 566
Q ss_pred CCCCChhHHHHHHHHHhccCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCCchhHH
Q 008183 334 KLEPGLEHYTCLISAMGRAGRLEDAERIAMAM---PFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDIN-PYDDSAYV 409 (575)
Q Consensus 334 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~ 409 (575)
|+.||..+|++||.+|+++|++++|.++|++| ++.||..+|++||.+|++.|++++|.+++++|.+.+ .+|..+|.
T Consensus 679 G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~ 758 (1060)
T PLN03218 679 GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYS 758 (1060)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 88889889999999999999999999888888 578888899999999999999999999999888766 45777888
Q ss_pred HHHHHHHhCCCchHHHHHHHHHhhCCCccCCceeEEEE-------------CCEEEEEEeCCCCCcc-hHHHHHHHHHHH
Q 008183 410 IVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEV-------------KGKVHVFLAGDRMHER-TEDIYTKLAELM 475 (575)
Q Consensus 410 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~-------------~~~~~~~~~~~~~~~~-~~~~~~~l~~l~ 475 (575)
.|+.+|.+.|++++|.+++++|.+.|+.|+..+....+ ...+..|-.+ ++. ...-......++
T Consensus 759 sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g---~~~~~n~w~~~Al~lf 835 (1060)
T PLN03218 759 ILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSG---RPQIENKWTSWALMVY 835 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcc---ccccccchHHHHHHHH
Confidence 88899999999999999999998888887753221100 0000001000 000 001113455789
Q ss_pred HHHHHcCCccCCCccccccChHHhhhhHHHHHHHHHHHHhhhcCCCCCCc--EEEEccccccCC-cchhhHhhhhhcCce
Q 008183 476 EECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKT--LRIVKNLRICRD-CHESFKYISRVVERE 552 (575)
Q Consensus 476 ~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~h~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~a~~~~~~~~~~~ 552 (575)
++|.+.|+.||..++...+....+.+.. .....+-..+++. +.+++.. .++++.+ |. -++|..++.+|..+.
T Consensus 836 ~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~-~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~---~~~~~~A~~l~~em~~~G 910 (1060)
T PLN03218 836 RETISAGTLPTMEVLSQVLGCLQLPHDA-TLRNRLIENLGIS-ADSQKQSNLSTLVDGF---GEYDPRAFSLLEEAASLG 910 (1060)
T ss_pred HHHHHCCCCCCHHHHHHHHHHhcccccH-HHHHHHHHHhccC-CCCcchhhhHHHHHhh---ccChHHHHHHHHHHHHcC
Confidence 9999999999987765544222222222 2334455556665 4444322 2335544 33 358999999998875
Q ss_pred EE
Q 008183 553 IV 554 (575)
Q Consensus 553 ~~ 554 (575)
|+
T Consensus 911 i~ 912 (1060)
T PLN03218 911 VV 912 (1060)
T ss_pred CC
Confidence 54
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-63 Score=534.09 Aligned_cols=487 Identities=18% Similarity=0.270 Sum_probs=426.4
Q ss_pred CCChhhHHHHHHHHhcCch---HHHHHHHHhhCCCCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhH
Q 008183 61 SPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137 (575)
Q Consensus 61 ~~~~~~~~~li~~~~~~g~---a~~~~~~m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 137 (575)
.++..+|+++|.++.+.|+ |+++|+.|...+ +..||..||+.++.+|++.+ +++.+.++|..|.+.|+.||+.+
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~--~~~~~~~t~~~ll~a~~~~~-~~~~a~~l~~~m~~~g~~~~~~~ 160 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGC--PFTLPASTYDALVEACIALK-SIRCVKAVYWHVESSGFEPDQYM 160 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcC--CCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHhCCCcchHH
Confidence 4577799999999999998 999999998754 16899999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccH
Q 008183 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAM 217 (575)
Q Consensus 138 ~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 217 (575)
||.|+++|+++|++++|.++|++|++||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.+..
T Consensus 161 ~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 161 MNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 008183 218 EQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR 297 (575)
Q Consensus 218 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 297 (575)
+.+.+++..+.+.|+.+|..++|+||++|+++|++++|.++|++ |+++|+++||+||.+|++.|++++|+++|++|.+.
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~-m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~ 319 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDG-MPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS 319 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHh-CCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999 89999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHH
Q 008183 298 GFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377 (575)
Q Consensus 298 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l 377 (575)
|+.||..||++++.+|++.|++++|.+++..| .+.|+.||..+|++||++|+++|++++|.++|++|. +||..+||+|
T Consensus 320 g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m-~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~l 397 (697)
T PLN03081 320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGL-IRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNAL 397 (697)
T ss_pred CCCCCHHHHHHHHHHHHhccchHHHHHHHHHH-HHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHH
Confidence 99999999999999999999999999999999 677999999999999999999999999999999997 7999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcC-CCCchhHHHHHHHHHhCCCchHHHHHHHHHhh-CCCccCCceeEEEECCEEEEEE
Q 008183 378 LSFSAIHGKADMASKMGKRLIDIN-PYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD-RRVRKEGGRSWIEVKGKVHVFL 455 (575)
Q Consensus 378 l~~~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~~s~~~~~~~~~~~~ 455 (575)
|.+|+++|+.++|.++|++|.+.+ .+|..+|+.++.+|.+.|++++|.++|+.|.+ .|+.|+..... .++
T Consensus 398 I~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~--------~li 469 (697)
T PLN03081 398 IAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYA--------CMI 469 (697)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchH--------hHH
Confidence 999999999999999999999877 55788999999999999999999999999975 68887654322 345
Q ss_pred eCCCCCcchHHHHHHHHHHHHHHHHcCCccCCCccccccChHHhhhhHHHHHHHHHHHHhhhcCCCCCCcEEEEcccccc
Q 008183 456 AGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRIC 535 (575)
Q Consensus 456 ~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~h~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (575)
..+...++.+++.+. +++.++.||..++..-+..+...+.+..-.+.....+++. +...++.+.+++.|.++
T Consensus 470 ~~l~r~G~~~eA~~~-------~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y~~~ 541 (697)
T PLN03081 470 ELLGREGLLDEAYAM-------IRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLNNYVVLLNLYNSS 541 (697)
T ss_pred HHHHhcCCHHHHHHH-------HHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHHHHHHHHhC
Confidence 666778888877643 3456889997664433333322222111011111223444 44455566678999999
Q ss_pred CCcchhhHhhhhhcCceEEeec-------CCccCcccCccc
Q 008183 536 RDCHESFKYISRVVEREIVVRD-------VNRYHRFLNGSC 569 (575)
Q Consensus 536 ~~~~~a~~~~~~~~~~~~~~~d-------~~~~h~~~~g~~ 569 (575)
|+.++|.+++..|..+.+-..+ .+..|.|-.|-.
T Consensus 542 G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~ 582 (697)
T PLN03081 542 GRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDR 582 (697)
T ss_pred CCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCC
Confidence 9999999999999988653222 234567765543
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-61 Score=521.00 Aligned_cols=429 Identities=15% Similarity=0.153 Sum_probs=398.6
Q ss_pred ccCCCCCCCCccHHHHHHHHHhhCC-CcccHHHHHHHHhHcCCChHHHHHHHccCC----CCChhhHHHHHHHHhcCch-
Q 008183 6 NQQPQPQNTSTDPRIVHARALKSSQ-ADRSIYNNLITNYSKSNLLSYSLRLFNHIP----SPNIVSWTALISAHSNSPL- 79 (575)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~li~~~~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~- 79 (575)
+..+...++.+.|.++|..|.+.|+ ||..+||.||.+|+++|++++|.++|++|. .||..+||+||.+|++.|+
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 4455667889999999999999999 999999999999999999999999999997 6999999999999999999
Q ss_pred --HHHHHHHHhhCCCCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHh--hCCCCchhHHHHHHHHHHhCCChHHHH
Q 008183 80 --SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLK--LSLHDKPFCGSALVHFYSRFRSPDNAK 155 (575)
Q Consensus 80 --a~~~~~~m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~ 155 (575)
|+++|++|...| +.||..||+.+|.+|++.| +++.|.++++.|.+ .|+.||..+|++||++|+++|++++|.
T Consensus 524 eeAl~lf~~M~~~G---v~PD~vTYnsLI~a~~k~G-~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~ 599 (1060)
T PLN03218 524 AKAFGAYGIMRSKN---VKPDRVVFNALISACGQSG-AVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599 (1060)
T ss_pred HHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999 9999999999999999999 99999999999987 678999999999999999999999999
Q ss_pred HHHHhcCC----CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q 008183 156 KVFDEIRE----RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSG 231 (575)
Q Consensus 156 ~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 231 (575)
++|++|.+ |+..+||++|.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|++++|.++|+.|.+.|
T Consensus 600 elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G 679 (1060)
T PLN03218 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG 679 (1060)
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999976 57799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 008183 232 LDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS---VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLA 308 (575)
Q Consensus 232 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 308 (575)
+.||..+|++||.+|+++|++++|.++|++|.. .||..+||+||.+|++.|++++|+++|++|.+.|+.||..||+.
T Consensus 680 ~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~s 759 (1060)
T PLN03218 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSI 759 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 999999999999999999999999999999432 79999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHh----cc-------------------CChHHHHHHHHhC
Q 008183 309 VLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMG----RA-------------------GRLEDAERIAMAM 365 (575)
Q Consensus 309 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~----~~-------------------g~~~~A~~~~~~m 365 (575)
+|.+|++.|++++|.++|.+| .+.|+.||..+|++|+.+|. ++ +..++|..+|++|
T Consensus 760 LL~a~~k~G~le~A~~l~~~M-~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM 838 (1060)
T PLN03218 760 LLVASERKDDADVGLDLLSQA-KEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRET 838 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHH
Confidence 999999999999999999999 67799999999999997643 22 2346799999999
Q ss_pred ---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCCCccCCc
Q 008183 366 ---PFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDIN-PYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGG 441 (575)
Q Consensus 366 ---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 441 (575)
++.||..||+.++.++...+..+.+..+++.+.... +++..+|+.|++++.+. .++|..++++|...|+.|+-.
T Consensus 839 ~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 839 ISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 799999999999988878888888888888776543 66778999999998432 368999999999999998753
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.2e-24 Score=240.34 Aligned_cols=413 Identities=13% Similarity=0.045 Sum_probs=313.7
Q ss_pred CCCCCccHHHHHHHHHhhCCCcccHHHHHHHHhHcCCChHHHHHHHccCC---CCChhhHHHHHHHHhcCch---HHHHH
Q 008183 11 PQNTSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIP---SPNIVSWTALISAHSNSPL---SLNIF 84 (575)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~---a~~~~ 84 (575)
..+..+.+..++..+.+....++.+++.+...|...|++++|.+.|+++. +.+...+..+...+...|+ |.+.|
T Consensus 443 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 522 (899)
T TIGR02917 443 RSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRF 522 (899)
T ss_pred hcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 45667788888888877555677788888899999999999999998764 3455567777777777777 88888
Q ss_pred HHHhhCCCCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCC-
Q 008183 85 LSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE- 163 (575)
Q Consensus 85 ~~m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~- 163 (575)
+++.... +.+..++..+...+...| +.+.+...+..+.+.+ +.+...+..+...|.+.|++++|..+++.+..
T Consensus 523 ~~~~~~~----~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 596 (899)
T TIGR02917 523 EKVLTID----PKNLRAILALAGLYLRTG-NEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADA 596 (899)
T ss_pred HHHHHhC----cCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 8888753 446677777888888888 8888888888887765 45566777888888888888888888888754
Q ss_pred --CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHH
Q 008183 164 --RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTG 241 (575)
Q Consensus 164 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 241 (575)
.+...|..+...|.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|..++..+.+.. +.+...+..
T Consensus 597 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 674 (899)
T TIGR02917 597 APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIG 674 (899)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHH
Confidence 356678888888888888888888888887643 3355667777888888888888888888887753 555777888
Q ss_pred HHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 008183 242 LIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319 (575)
Q Consensus 242 li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 319 (575)
+...+.+.|++++|.++++.+.. +.+...|..+...+...|++++|++.|+++...+ |+..++..+..++.+.|+.
T Consensus 675 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~ 752 (899)
T TIGR02917 675 LAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNT 752 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCH
Confidence 88888888888888888887332 3456667777788888888888888888887753 4446666777788888888
Q ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008183 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRL 397 (575)
Q Consensus 320 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 397 (575)
++|.+.++.+... .+.+...+..+...|.+.|++++|.+.|+++ ...| +..+++.+...+...|+ .+|...++++
T Consensus 753 ~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~ 829 (899)
T TIGR02917 753 AEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKA 829 (899)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHH
Confidence 8888888777443 2334677777888888888888888888776 2233 57777777777777777 6788888887
Q ss_pred HhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCCC
Q 008183 398 IDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436 (575)
Q Consensus 398 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 436 (575)
.+..|.++..+..+..+|...|++++|.++++++.+.+.
T Consensus 830 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 830 LKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 777777777777777777788888888888877776554
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.3e-24 Score=239.64 Aligned_cols=411 Identities=12% Similarity=0.005 Sum_probs=354.9
Q ss_pred CCCCCccHHHHHHHHHhhCCCcccHHHHHHHHhHcCCChHHHHHHHccCC---CCChhhHHHHHHHHhcCch---HHHHH
Q 008183 11 PQNTSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIP---SPNIVSWTALISAHSNSPL---SLNIF 84 (575)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~---a~~~~ 84 (575)
..++...+...+..+.+....+......++..|.+.|++++|.++++.+. +++...|+.+...+...|+ |.+.|
T Consensus 409 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 488 (899)
T TIGR02917 409 SQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAF 488 (899)
T ss_pred hCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHH
Confidence 45677888888888888766445667778899999999999999999885 3567789999999999988 99999
Q ss_pred HHHhhCCCCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCC-
Q 008183 85 LSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE- 163 (575)
Q Consensus 85 ~~m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~- 163 (575)
.++.+.. +.+...+..+...+...| +++.|.+.++.+++.. +.+..++..+...|.+.|+.++|...|+++.+
T Consensus 489 ~~a~~~~----~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 562 (899)
T TIGR02917 489 EKALSIE----PDFFPAAANLARIDIQEG-NPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL 562 (899)
T ss_pred HHHHhhC----CCcHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9998743 345566777788888888 9999999999998876 55778899999999999999999999998854
Q ss_pred --CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHH
Q 008183 164 --RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTG 241 (575)
Q Consensus 164 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 241 (575)
.+...+..++..|.+.|++++|+.+++++... .+.+..+|..+..++...|++++|...+..+.+.. +.+...+..
T Consensus 563 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 640 (899)
T TIGR02917 563 NPQEIEPALALAQYYLGKGQLKKALAILNEAADA-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLL 640 (899)
T ss_pred CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence 35667888999999999999999999999764 35567889999999999999999999999998865 556778899
Q ss_pred HHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 008183 242 LIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319 (575)
Q Consensus 242 li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 319 (575)
+...|.+.|++++|.+.|++++. +.+..+|..++..+...|++++|.++++.+.+.+ +++...+..+...+...|++
T Consensus 641 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~ 719 (899)
T TIGR02917 641 LADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDY 719 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCH
Confidence 99999999999999999998554 4567899999999999999999999999998875 44677888888999999999
Q ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008183 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFE-PDAAVWRALLSFSAIHGKADMASKMGKRL 397 (575)
Q Consensus 320 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 397 (575)
++|...+..+.. ..|+..++..+...+.+.|++++|.+.++++ ... .+...+..+...|...|+.++|...++++
T Consensus 720 ~~A~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 796 (899)
T TIGR02917 720 PAAIQAYRKALK---RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTV 796 (899)
T ss_pred HHHHHHHHHHHh---hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 999999998853 3566678888999999999999999999887 233 46888999999999999999999999999
Q ss_pred HhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 398 IDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 398 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
++..|+++.++..++.++...|+ .+|..++++..+.
T Consensus 797 ~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 797 VKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 99999999999999999999999 8899999988764
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.3e-26 Score=183.48 Aligned_cols=106 Identities=56% Similarity=1.002 Sum_probs=93.9
Q ss_pred ceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCCccCCCccccccChHHh--------hhhHHHHHHHHHH
Q 008183 441 GRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREK--------REALWYHSEKLAL 512 (575)
Q Consensus 441 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p~~~~~~~~~~~~~~--------~~~~~~h~~~l~~ 512 (575)
++||.++ |.|++|+.+||+. ++..++...||.|++..+.+++.++++ +..+.+|||+||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 5899875 9999999999987 455677888999999988887766544 5678999999999
Q ss_pred HHhhhcCCCCCCcEEEEccc-cccCCcchhhHhhhhhcCceEEeecCCccCccc
Q 008183 513 AFGLVSGAPRGKTLRIVKNL-RICRDCHESFKYISRVVEREIVVRDVNRYHRFL 565 (575)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~d~~~~h~~~ 565 (575)
+||++ ++ ++++|+ |+|+|||+++|+||++.+|+|+|||++|||||+
T Consensus 70 afgli-~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLI-NT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhccc-ce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 99999 55 778888 999999999999999999999999999999997
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.1e-19 Score=181.20 Aligned_cols=292 Identities=12% Similarity=0.061 Sum_probs=228.0
Q ss_pred HHHhCCChHHHHHHHHhcCC--C-CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcC---HHHHHHHHHHHHhcccH
Q 008183 144 FYSRFRSPDNAKKVFDEIRE--R-DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGST---MYCVSGALRAAAELAAM 217 (575)
Q Consensus 144 ~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~~~~ 217 (575)
.+...|++++|...|.++.+ | +..+|..+...+.+.|++++|+.+++.+...+..++ ..++..+...+...|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 45677888888888888865 2 445678888888888888888888888876543222 24567778888888888
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC-CCC------hhhHHHHHHHHHHcCChHHHHHH
Q 008183 218 EQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS-VLN------SIAWNAMMAGYAQQGDQSTVLEL 290 (575)
Q Consensus 218 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~------~~~~~~li~~~~~~g~~~~A~~l 290 (575)
+.|..++..+.+.. +.+..+++.++.+|.+.|++++|.+.++.+.. .|+ ...|..+...+.+.|++++|...
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 88888888887753 45677888888889999999999888887433 121 12355677778889999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHhccCChHHHHHHHHhC-CC
Q 008183 291 FHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG--LEHYTCLISAMGRAGRLEDAERIAMAM-PF 367 (575)
Q Consensus 291 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 367 (575)
|+++.+.. +.+...+..+...+.+.|++++|.++++++... .|+ ..+++.++.+|.+.|++++|...++++ ..
T Consensus 203 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 203 LKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99988753 224567777888889999999999999988433 344 456788899999999999999999887 45
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHh---CCCchHHHHHHHHHhhCCCccCCc
Q 008183 368 EPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSG---VGRWDEVAEVRKVMKDRRVRKEGG 441 (575)
Q Consensus 368 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~ 441 (575)
.|+...+..+...+.+.|++++|..+++++++..|++. .+..++..+.. .|+.+++..++++|.+++++++|.
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 67777778889999999999999999999999888664 56666666654 568999999999999999988886
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.8e-19 Score=170.14 Aligned_cols=377 Identities=13% Similarity=0.093 Sum_probs=279.3
Q ss_pred ccHHHHHHHHhHcCCChHHHHHHHccCC---CCChhhHHHHHHHHhcCch---HHHHHHHHhhCCCCCcCCChhhHHHHH
Q 008183 33 RSIYNNLITNYSKSNLLSYSLRLFNHIP---SPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLF 106 (575)
Q Consensus 33 ~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~---a~~~~~~m~~~~~~~~~p~~~t~~~ll 106 (575)
..+|..+-+.+-..|++++|..+++.+. +..+..|-.+-.++...|+ |...|.+..+ +.|+..-..+-+
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq-----lnP~l~ca~s~l 190 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ-----LNPDLYCARSDL 190 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh-----cCcchhhhhcch
Confidence 3467777788888888888888887764 3355678888888888777 8888877776 557666555544
Q ss_pred HHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCCCC---cchHHHHHHHHHhCCCch
Q 008183 107 KTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERD---VVCYGAMIVGFAQNSRLV 183 (575)
Q Consensus 107 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~ 183 (575)
..+.+..+.++++...+-..++.. +.=..+|+.|-..+-..|++..|..-|++...-| ...|-.|-..|...+.++
T Consensus 191 gnLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 191 GNLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred hHHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcch
Confidence 444443337777777777777654 2234567788888888888888888888876533 346777888888888888
Q ss_pred HHHHHHHHhHHCCCCcCH-HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhh
Q 008183 184 DSLSVFADMRSSDVGSTM-YCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDEN 262 (575)
Q Consensus 184 ~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 262 (575)
+|+..|.+... ..|+. ..+..+...|-..|+++.|..-|++.++.. +.-...|+.|.+++-..|++.+|.+.++++
T Consensus 270 ~Avs~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 270 RAVSCYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred HHHHHHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 88888877765 35654 466677777778888888888888887753 223677888888888888888888888875
Q ss_pred CC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-
Q 008183 263 LS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPD-EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG- 338 (575)
Q Consensus 263 ~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~- 338 (575)
+. .....+.+.|...|...|.+++|..+|....+ +.|. ...++.|...|-+.|++++|...+++.. .++|+
T Consensus 347 L~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~f 421 (966)
T KOG4626|consen 347 LRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTF 421 (966)
T ss_pred HHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchH
Confidence 54 44566778888888888888888888887766 3444 4567778888888888888888887553 57787
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 008183 339 LEHYTCLISAMGRAGRLEDAERIAMAM-PFEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLS 416 (575)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 416 (575)
...|+.+...|-..|+.+.|.+.+.+. .+.|. ....+.|.+.|...|+..+|...++..++++|+.+.+|-.++...-
T Consensus 422 Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 422 ADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred HHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHH
Confidence 678888888888888888888888776 56675 6778888888888888888888888888888888888777776665
Q ss_pred hCCCchH
Q 008183 417 GVGRWDE 423 (575)
Q Consensus 417 ~~g~~~~ 423 (575)
--.+|.+
T Consensus 502 ~vcdw~D 508 (966)
T KOG4626|consen 502 IVCDWTD 508 (966)
T ss_pred HHhcccc
Confidence 5555555
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.7e-18 Score=175.90 Aligned_cols=285 Identities=14% Similarity=0.085 Sum_probs=232.3
Q ss_pred HhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCCC-C------cchHHHHHHHHHhCCC
Q 008183 109 CASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRER-D------VVCYGAMIVGFAQNSR 181 (575)
Q Consensus 109 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-~------~~~~~~li~~~~~~g~ 181 (575)
+...| +++.|...+..+++.+ +.+..++..+...|.+.|++++|..+++.+... + ...|..+...|.+.|+
T Consensus 45 ~~~~~-~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 45 FLLNE-QPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHhcC-ChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 34556 8888999999988865 345667888888999999999999999887652 1 2457788889999999
Q ss_pred chHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCc----hhHHHHHHHHHHccCCHHHHHH
Q 008183 182 LVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRN----VIVGTGLIDGYGKAGIVSDARR 257 (575)
Q Consensus 182 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~ 257 (575)
+++|+.+|+++.+. ..++..++..++..+...|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|.+
T Consensus 123 ~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 99999999999765 234667888899999999999999999999887653322 2245667888899999999999
Q ss_pred HHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 008183 258 VFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKL 335 (575)
Q Consensus 258 ~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 335 (575)
.|++++. +.+...+..+...|.+.|++++|.++|+++...+......++..+..++...|++++|...++.+...
T Consensus 202 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--- 278 (389)
T PRK11788 202 LLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--- 278 (389)
T ss_pred HHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence 9998554 34566788889999999999999999999987643333567888999999999999999999988533
Q ss_pred CCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHH---cCChHHHHHHHHHHHh
Q 008183 336 EPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEPDAAVWRALLSFSAI---HGKADMASKMGKRLID 399 (575)
Q Consensus 336 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~ 399 (575)
.|+...+..++..+.+.|++++|..+++++ ...|+..+++.++..+.. .|+.+++..+++++.+
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 577777789999999999999999999876 667999999998888775 5588999999998886
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3e-16 Score=179.06 Aligned_cols=407 Identities=12% Similarity=0.064 Sum_probs=263.9
Q ss_pred CCCccHHHHHHHHHhhCCCcccHHHHHHHHhHcCCChHHHHHHHccCC--CCCh---hhHHHHH------------HHHh
Q 008183 13 NTSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIP--SPNI---VSWTALI------------SAHS 75 (575)
Q Consensus 13 ~~~~~~~~~~~~~~~~g~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~--~~~~---~~~~~li------------~~~~ 75 (575)
++.+.|...+...++..+.+...+..|-..|.+.|++++|...|++.. .|+. ..|..++ ..+.
T Consensus 283 g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~ 362 (1157)
T PRK11447 283 GQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAAL 362 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHH
Confidence 444555555555555444445555666666666666666666665543 1211 1222221 1223
Q ss_pred cCch---HHHHHHHHhhCCCCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChH
Q 008183 76 NSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPD 152 (575)
Q Consensus 76 ~~g~---a~~~~~~m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 152 (575)
+.|+ |+..|++..+.. +.+...+..+-..+...| +++.|.+.++.+++.. +.+...+..+...|. .++.+
T Consensus 363 ~~g~~~eA~~~~~~Al~~~----P~~~~a~~~Lg~~~~~~g-~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~ 435 (1157)
T PRK11447 363 KANNLAQAERLYQQARQVD----NTDSYAVLGLGDVAMARK-DYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPE 435 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHH
Confidence 3444 666666665532 223334444555555555 6666666666666543 223344444555553 34556
Q ss_pred HHHHHHHhcCCCC------------cchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCc-CHHHHHHHHHHHHhcccHHH
Q 008183 153 NAKKVFDEIRERD------------VVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS-TMYCVSGALRAAAELAAMEQ 219 (575)
Q Consensus 153 ~A~~~f~~m~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~ 219 (575)
+|..+++.++... ...+..+...+...|++++|++.|++..+. .| +...+..+...+.+.|++++
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHH
Confidence 6666665544211 122344555667778888888888887764 34 34556667777888888888
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCC----Ch---------hhHHHHHHHHHHcCChHH
Q 008183 220 CRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL----NS---------IAWNAMMAGYAQQGDQST 286 (575)
Q Consensus 220 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~---------~~~~~li~~~~~~g~~~~ 286 (575)
|...++.+++.. +.+...+..+...+.+.|+.++|.+.++. +... +. ..+..+...+...|+.++
T Consensus 514 A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~-l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 514 ADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNT-LPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHh-CCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 888888877643 33455555555566777888888888877 4421 11 112234566788899999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC
Q 008183 287 VLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM 365 (575)
Q Consensus 287 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (575)
|+.+++. .+++...+..+...+.+.|++++|...|+..... .|+ ...+..++..|...|++++|.+.++..
T Consensus 592 A~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~---~P~~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 592 AEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR---EPGNADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred HHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9888772 2345556677888889999999999999988543 454 788889999999999999999999987
Q ss_pred -CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCc------hhHHHHHHHHHhCCCchHHHHHHHHHh-hCCC
Q 008183 366 -PFEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDD------SAYVIVANVLSGVGRWDEVAEVRKVMK-DRRV 436 (575)
Q Consensus 366 -~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~~~ 436 (575)
...|+ ..++..+..++...|++++|.++++++++..|.++ ..+..+..++...|++++|...+++.. ..|+
T Consensus 664 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~ 743 (1157)
T PRK11447 664 PATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGI 743 (1157)
T ss_pred hccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Confidence 34554 66777788888999999999999999998765443 356667889999999999999998775 3445
Q ss_pred cc
Q 008183 437 RK 438 (575)
Q Consensus 437 ~~ 438 (575)
.|
T Consensus 744 ~~ 745 (1157)
T PRK11447 744 TP 745 (1157)
T ss_pred CC
Confidence 43
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.8e-17 Score=161.48 Aligned_cols=353 Identities=13% Similarity=0.130 Sum_probs=298.5
Q ss_pred hHHHHHHHHhcCch---HHHHHHHHhhCCCCCcCC-ChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhH-HHH
Q 008183 66 SWTALISAHSNSPL---SLNIFLSMLRHPTLSFLP-NQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC-GSA 140 (575)
Q Consensus 66 ~~~~li~~~~~~g~---a~~~~~~m~~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~ 140 (575)
+|..+-..+-..|+ |+.+++.|.+ .+| ....|..+-.++...| +.+.+.+.+...++.+ |+... .+.
T Consensus 118 ~ysn~aN~~kerg~~~~al~~y~~aie-----l~p~fida~inla~al~~~~-~~~~a~~~~~~alqln--P~l~ca~s~ 189 (966)
T KOG4626|consen 118 AYSNLANILKERGQLQDALALYRAAIE-----LKPKFIDAYINLAAALVTQG-DLELAVQCFFEALQLN--PDLYCARSD 189 (966)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHh-----cCchhhHHHhhHHHHHHhcC-CCcccHHHHHHHHhcC--cchhhhhcc
Confidence 46666667766777 9999999998 445 5668888888888888 9999999998887754 44443 344
Q ss_pred HHHHHHhCCChHHHHHHHHhcCC--C-CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCH-HHHHHHHHHHHhccc
Q 008183 141 LVHFYSRFRSPDNAKKVFDEIRE--R-DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTM-YCVSGALRAAAELAA 216 (575)
Q Consensus 141 li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~ 216 (575)
+-...-..|++++|...+.+..+ | =.+.|+.|-..+-.+|+...|+.-|++..+ +.|+- ..|..+-..+...+.
T Consensus 190 lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~ 267 (966)
T KOG4626|consen 190 LGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARI 267 (966)
T ss_pred hhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhc
Confidence 55566668999999988877654 3 357899999999999999999999999876 45663 478888889999999
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC-CC-ChhhHHHHHHHHHHcCChHHHHHHHHHH
Q 008183 217 MEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS-VL-NSIAWNAMMAGYAQQGDQSTVLELFHLL 294 (575)
Q Consensus 217 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m 294 (575)
++.|...|....... +....++..|...|-..|++|-|.+.++++++ +| -...||.|..++-..|+..+|.+.|.+.
T Consensus 268 ~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 268 FDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred chHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 999999888887653 44577788888999999999999999998666 34 4678999999999999999999999998
Q ss_pred HHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-
Q 008183 295 EMRGFAP-DEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM-PFEPD- 370 (575)
Q Consensus 295 ~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~- 370 (575)
... .| -....+.|...+...|.+++|..+|... ..+.|. ...++.|...|-.+|++++|...+++. .++|+
T Consensus 347 L~l--~p~hadam~NLgni~~E~~~~e~A~~ly~~a---l~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~f 421 (966)
T KOG4626|consen 347 LRL--CPNHADAMNNLGNIYREQGKIEEATRLYLKA---LEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTF 421 (966)
T ss_pred HHh--CCccHHHHHHHHHHHHHhccchHHHHHHHHH---HhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchH
Confidence 875 34 3567889999999999999999999865 356777 678899999999999999999999887 78998
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 371 AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 371 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
..+|+.+...|...|+.+.|.+.+.+++..+|.-..++..|..+|..+|++.+|..-++...+-
T Consensus 422 Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 422 ADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred HHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 7899999999999999999999999999999998889999999999999999999999987653
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4e-16 Score=178.01 Aligned_cols=384 Identities=12% Similarity=0.043 Sum_probs=297.2
Q ss_pred HHHhHcCCChHHHHHHHccCC---CCChhhHHHHHHHHhcCch---HHHHHHHHhhCCCCCcCCChhhHHH---------
Q 008183 40 ITNYSKSNLLSYSLRLFNHIP---SPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLAS--------- 104 (575)
Q Consensus 40 i~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~---a~~~~~~m~~~~~~~~~p~~~t~~~--------- 104 (575)
-..+...|++++|...|++.. +.+...+..+-..+.+.|+ |+..|++..+... -.++...+..
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p--~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDP--HSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CccchhHHHHHHHhhhHHH
Confidence 456778899999999998774 3367788888888988888 9999999887430 1112111211
Q ss_pred ---HHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCC--C-CcchHHHHHHHHHh
Q 008183 105 ---LFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE--R-DVVCYGAMIVGFAQ 178 (575)
Q Consensus 105 ---ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~ 178 (575)
.-..+.+.| +++.|...++.+++.. +.+...+..|...|.+.|++++|.+.|++..+ | +...+..+...|.
T Consensus 354 ~~~~g~~~~~~g-~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~- 430 (1157)
T PRK11447 354 LIQQGDAALKAN-NLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR- 430 (1157)
T ss_pred HHHHHHHHHHCC-CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-
Confidence 123456777 9999999999999875 45667778889999999999999999998865 3 4456666777664
Q ss_pred CCCchHHHHHHHHhHHCCCCc--------CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccC
Q 008183 179 NSRLVDSLSVFADMRSSDVGS--------TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250 (575)
Q Consensus 179 ~g~~~~A~~~~~~m~~~g~~p--------~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 250 (575)
.++.++|+.+++.+....... ....+..+...+...|++++|.+.+++.++.. +-+...+..+...|.+.|
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 467899999988764321100 11234456667788999999999999999874 446778888999999999
Q ss_pred CHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH---------HHHHHHHHHHhcCCH
Q 008183 251 IVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEY---------SFLAVLTALCNAGLA 319 (575)
Q Consensus 251 ~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---------t~~~ll~a~~~~g~~ 319 (575)
++++|...|++++. +.+...+..+...+...|+.++|+..++.+......++.. .+..+...+...|+.
T Consensus 510 ~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 510 QRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 99999999998544 3455566666666788999999999998765432222221 233456678889999
Q ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008183 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRL 397 (575)
Q Consensus 320 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 397 (575)
++|..+++. .+++...+..+...+.+.|++++|...|++. ...| +...+..+...+...|+.++|+..++.+
T Consensus 590 ~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 590 AEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred HHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999998772 1345667788999999999999999999988 4556 4889999999999999999999999999
Q ss_pred HhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCC
Q 008183 398 IDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435 (575)
Q Consensus 398 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 435 (575)
.+..|+++.++..+..++...|++++|.++++++....
T Consensus 664 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 664 PATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred hccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 99999998899999999999999999999999987654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-15 Score=162.25 Aligned_cols=388 Identities=11% Similarity=0.026 Sum_probs=281.6
Q ss_pred HHHHHHHhHcCCChHHHHHHHccCC--CCChhhHHHHHHHHhcCch---HHHHHHHHhhCCCCCcCCChhhHHHHHHHHh
Q 008183 36 YNNLITNYSKSNLLSYSLRLFNHIP--SPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCA 110 (575)
Q Consensus 36 ~~~li~~~~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~---a~~~~~~m~~~~~~~~~p~~~t~~~ll~~~~ 110 (575)
+..+-..|.+.|++++|.+.|++.. .|+...|..+-.+|...|+ |++.+....+.. +.+...+..+-.++.
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~----p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD----PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHH
Confidence 3456677888999999999998864 5777788888888888888 999999988742 234567778888888
Q ss_pred hchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCC---------------------------
Q 008183 111 SLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE--------------------------- 163 (575)
Q Consensus 111 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--------------------------- 163 (575)
..| +++.|..-+..+...+...+......+...+. ......+...++.-+.
T Consensus 206 ~lg-~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (615)
T TIGR00990 206 GLG-KYADALLDLTASCIIDGFRNEQSAQAVERLLK-KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDS 283 (615)
T ss_pred HcC-CHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH-HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcc
Confidence 888 99888877765544432222111111111111 1111222222221111
Q ss_pred --CCc---chHHHHHHH---HHhCCCchHHHHHHHHhHHCC-CCcC-HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q 008183 164 --RDV---VCYGAMIVG---FAQNSRLVDSLSVFADMRSSD-VGST-MYCVSGALRAAAELAAMEQCRVIHGHAVVSGLD 233 (575)
Q Consensus 164 --~~~---~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g-~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 233 (575)
-+. ..+..+... ....+++++|++.|++....+ ..|+ ...+..+...+...|++++|...++..++.. +
T Consensus 284 ~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P 362 (615)
T TIGR00990 284 NELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-P 362 (615)
T ss_pred cccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-C
Confidence 000 011111100 122467899999999998764 3343 3467777777888999999999999998863 3
Q ss_pred CchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008183 234 RNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311 (575)
Q Consensus 234 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 311 (575)
.+...+..+...|...|++++|...|+.++. +.+...|..+...|...|++++|+..|++..+.. +.+...+..+..
T Consensus 363 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~ 441 (615)
T TIGR00990 363 RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGV 441 (615)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHH
Confidence 3466888899999999999999999998555 4567889999999999999999999999998863 235667777888
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCH-H-------HHHHHHHHH
Q 008183 312 ALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM-PFEPDA-A-------VWRALLSFS 381 (575)
Q Consensus 312 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~-------~~~~ll~~~ 381 (575)
++.+.|++++|...++..... .|+ ...|+.+...+...|++++|.+.|++. .+.|+. . .++..+..+
T Consensus 442 ~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~ 518 (615)
T TIGR00990 442 TQYKEGSIASSMATFRRCKKN---FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALF 518 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHH
Confidence 889999999999999988533 454 688899999999999999999999886 344421 1 122222334
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 382 AIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 382 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
...|++++|..+++++++++|.+..++..++.+|...|++++|.+.|++..+.
T Consensus 519 ~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 519 QWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 44699999999999999999999889999999999999999999999987653
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-15 Score=162.40 Aligned_cols=349 Identities=9% Similarity=-0.026 Sum_probs=257.9
Q ss_pred cCCChHHHHHHHccCCC------CChhhHHHHHHHHhcCch---HHHHHHHHhhCCCCCcCCChhhHHHHHHHHhhchhh
Q 008183 45 KSNLLSYSLRLFNHIPS------PNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHA 115 (575)
Q Consensus 45 ~~g~~~~A~~~f~~m~~------~~~~~~~~li~~~~~~g~---a~~~~~~m~~~~~~~~~p~~~t~~~ll~~~~~~~~~ 115 (575)
|..+++.---.|..-++ .+..-.-.++..+.+.|+ |+.++....... +-+...+..+..++...| +
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~----p~~~~~l~~l~~~~l~~g-~ 91 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA----KNGRDLLRRWVISPLASS-Q 91 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC----CCchhHHHHHhhhHhhcC-C
Confidence 34455444445554442 122223345566677777 888888888753 223344555555666677 9
Q ss_pred HHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCC--C-CcchHHHHHHHHHhCCCchHHHHHHHHh
Q 008183 116 FLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE--R-DVVCYGAMIVGFAQNSRLVDSLSVFADM 192 (575)
Q Consensus 116 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m 192 (575)
++.|...++.+++.. +.+...+..+...+.+.|++++|...|++..+ | +...|..+...+...|++++|...++.+
T Consensus 92 ~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~ 170 (656)
T PRK15174 92 PDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQ 170 (656)
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 999999999998875 45567788888999999999999999998765 3 5667888899999999999999999988
Q ss_pred HHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhh
Q 008183 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIA 270 (575)
Q Consensus 193 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~ 270 (575)
......+. ..+.. +..+...|++++|...++.+++....++......+...+.+.|++++|.+.|+.++. +.+...
T Consensus 171 ~~~~P~~~-~a~~~-~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~ 248 (656)
T PRK15174 171 AQEVPPRG-DMIAT-CLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAAL 248 (656)
T ss_pred HHhCCCCH-HHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHH
Confidence 66432222 22222 334778899999999999887764334445555667888899999999999988554 456677
Q ss_pred HHHHHHHHHHcCChHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHH
Q 008183 271 WNAMMAGYAQQGDQST----VLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCL 345 (575)
Q Consensus 271 ~~~li~~~~~~g~~~~----A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l 345 (575)
+..+...|.+.|++++ |+..|++..+.. +.+...+..+...+...|++++|...+++... ..|+ ...+..+
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~L 324 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLPYVRAMY 324 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHH
Confidence 8888999999999986 789999888753 23566788888889999999999999998753 3565 5667778
Q ss_pred HHHHhccCChHHHHHHHHhC-CCCCCHHH-HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCc
Q 008183 346 ISAMGRAGRLEDAERIAMAM-PFEPDAAV-WRALLSFSAIHGKADMASKMGKRLIDINPYDD 405 (575)
Q Consensus 346 i~~~~~~g~~~~A~~~~~~m-~~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 405 (575)
...|.+.|++++|...|+++ ...|+... +..+..++...|+.++|...++++.+..|.+.
T Consensus 325 a~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 325 ARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 88999999999999999887 35666433 44456778889999999999999999887653
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-15 Score=163.06 Aligned_cols=328 Identities=12% Similarity=-0.003 Sum_probs=265.6
Q ss_pred ChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCC--C-CcchHHHHHH
Q 008183 98 NQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE--R-DVVCYGAMIV 174 (575)
Q Consensus 98 ~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~ 174 (575)
+..-...++..+.+.| +++.|..++...+.....+. .....+.......|++++|...|+++.+ | +...|..+..
T Consensus 41 ~~~~~~~~~~~~~~~g-~~~~A~~l~~~~l~~~p~~~-~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~ 118 (656)
T PRK15174 41 NEQNIILFAIACLRKD-ETDVGLTLLSDRVLTAKNGR-DLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVAS 118 (656)
T ss_pred cccCHHHHHHHHHhcC-CcchhHHHhHHHHHhCCCch-hHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 3345566778888889 99999999999998875544 4444455666679999999999999865 3 5567888999
Q ss_pred HHHhCCCchHHHHHHHHhHHCCCCcC-HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHH
Q 008183 175 GFAQNSRLVDSLSVFADMRSSDVGST-MYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253 (575)
Q Consensus 175 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 253 (575)
.+.+.|++++|+..|++.... .|+ ...+..+...+...|++++|...++.+.... +.+...+..+ ..+...|+++
T Consensus 119 ~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~ 194 (656)
T PRK15174 119 VLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLP 194 (656)
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHH
Confidence 999999999999999999874 454 5677888889999999999999999887764 2333344333 3478899999
Q ss_pred HHHHHHhhhCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH----HHHHH
Q 008183 254 DARRVFDENLSV---LNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGE----SEKWI 326 (575)
Q Consensus 254 ~A~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~----a~~~~ 326 (575)
+|.+.++.++.. ++...+..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++ |...+
T Consensus 195 eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~ 273 (656)
T PRK15174 195 EDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHW 273 (656)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHH
Confidence 999999985542 233445556778999999999999999998764 3356777788889999999986 78888
Q ss_pred HHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 008183 327 ERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM-PFEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDINPY 403 (575)
Q Consensus 327 ~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 403 (575)
++.. .+.|+ ...+..+...+.+.|++++|...+++. ...|+ ...+..+..++...|++++|...++++.+.+|.
T Consensus 274 ~~Al---~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~ 350 (656)
T PRK15174 274 RHAL---QFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV 350 (656)
T ss_pred HHHH---hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 8774 34565 678899999999999999999999887 45564 677888899999999999999999999999998
Q ss_pred CchhHHHHHHHHHhCCCchHHHHHHHHHhhCC
Q 008183 404 DDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435 (575)
Q Consensus 404 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 435 (575)
+...+..+..++...|++++|...+++..+..
T Consensus 351 ~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 351 TSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 87666677889999999999999999887653
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.3e-15 Score=160.86 Aligned_cols=394 Identities=11% Similarity=0.002 Sum_probs=292.7
Q ss_pred CcccHHHHHHHHhHcCCChHHHHHHHccCCC---CChhhHHHHHHHHhcCch---HHHHHHHHhhCCCCCcCCChhhHHH
Q 008183 31 ADRSIYNNLITNYSKSNLLSYSLRLFNHIPS---PNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLAS 104 (575)
Q Consensus 31 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~---a~~~~~~m~~~~~~~~~p~~~t~~~ 104 (575)
.++...+-.+......|+.++|.+++.+..+ .+...+..+...+...|+ |+++|++..... +.+...+..
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~----P~~~~a~~~ 88 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE----PQNDDYQRG 88 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHH
Confidence 3444455567777889999999999988653 344458888888888888 999999988742 334556667
Q ss_pred HHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCC--C-CcchHHHHHHHHHhCCC
Q 008183 105 LFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE--R-DVVCYGAMIVGFAQNSR 181 (575)
Q Consensus 105 ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~ 181 (575)
+...+...| +++.|...++.+++.. +.+.. +..+..++...|+.++|...++++.+ | +...+..+...+...|.
T Consensus 89 la~~l~~~g-~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 89 LILTLADAG-QYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHHCC-CHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 777788888 9999999999999874 44555 88889999999999999999999865 3 45566778888889999
Q ss_pred chHHHHHHHHhHHCCCCcCHH------HHHHHHHHHH-----hcccH---HHHHHHHHHHHHh-CCCCchh-HH----HH
Q 008183 182 LVDSLSVFADMRSSDVGSTMY------CVSGALRAAA-----ELAAM---EQCRVIHGHAVVS-GLDRNVI-VG----TG 241 (575)
Q Consensus 182 ~~~A~~~~~~m~~~g~~p~~~------t~~~ll~~~~-----~~~~~---~~a~~~~~~~~~~-g~~~~~~-~~----~~ 241 (575)
.++|++.++.... .|+.. .....+.... ..+++ +.|...++.+++. .-.|+.. .+ ..
T Consensus 166 ~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d 242 (765)
T PRK10049 166 SAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARID 242 (765)
T ss_pred hHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH
Confidence 9999999987653 34321 1112222221 11223 6777788888754 2233221 11 11
Q ss_pred HHHHHHccCCHHHHHHHHhhhCCCC-Chhh--HHHHHHHHHHcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHh
Q 008183 242 LIDGYGKAGIVSDARRVFDENLSVL-NSIA--WNAMMAGYAQQGDQSTVLELFHLLEMRGFAP---DEYSFLAVLTALCN 315 (575)
Q Consensus 242 li~~~~~~g~~~~A~~~~~~~~~~~-~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~ 315 (575)
.+.++...|++++|.+.|+.++... +... --.+...|...|++++|+..|+++.+..... .......+..++..
T Consensus 243 ~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~ 322 (765)
T PRK10049 243 RLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLE 322 (765)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHh
Confidence 1334457799999999999955432 1111 1225678999999999999999987653211 13456667778899
Q ss_pred cCCHHHHHHHHHHHHHhcC----------CCCC---hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 008183 316 AGLAGESEKWIERMKVRYK----------LEPG---LEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSF 380 (575)
Q Consensus 316 ~g~~~~a~~~~~~m~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~ 380 (575)
.|++++|.++++.+..... -.|+ ...+..+...+...|++++|+++++++ ...| +...+..+...
T Consensus 323 ~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l 402 (765)
T PRK10049 323 SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASV 402 (765)
T ss_pred cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999998854321 1123 234567778889999999999999997 3455 47889999999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 381 SAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 381 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
+...|++++|++.++++++..|++...+..++..+.+.|++++|..+++++.+.
T Consensus 403 ~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 403 LQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999865
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.9e-14 Score=152.24 Aligned_cols=212 Identities=12% Similarity=0.004 Sum_probs=156.4
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC-CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008183 218 EQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS-VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEM 296 (575)
Q Consensus 218 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 296 (575)
++|...+...... .|+......+...+...|++++|...|++++. +++...+..+...+.+.|++++|...|++..+
T Consensus 493 ~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~ 570 (987)
T PRK09782 493 GVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQ 570 (987)
T ss_pred HHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3444444444333 23333323334444577888888888876443 34445566667777888888888888888876
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HHHH
Q 008183 297 RGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEPD-AAVW 374 (575)
Q Consensus 297 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~ 374 (575)
.. +++...+..+.......|++++|...+++.. .+.|+...|..+...+.+.|++++|...+++. ...|+ ...+
T Consensus 571 l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL---~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~ 646 (987)
T PRK09782 571 RG-LGDNALYWWLHAQRYIPGQPELALNDLTRSL---NIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQ 646 (987)
T ss_pred cC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 53 2222333333444455689999999888774 34678888899999999999999999999887 56675 7788
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCC
Q 008183 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435 (575)
Q Consensus 375 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 435 (575)
+.+..++...|+.++|...++++++..|.++.++..+..+|...|++++|...+++..+..
T Consensus 647 ~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 647 AALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 8888899999999999999999999999999999999999999999999999999887643
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.4e-14 Score=155.19 Aligned_cols=385 Identities=11% Similarity=-0.000 Sum_probs=286.9
Q ss_pred CCCCccHHHHHHHHHhhCCCcccHHHHHHHHhHcCCChHHHHHHHccC---CCCChhhHHHHHHHHhcCch---HHHHHH
Q 008183 12 QNTSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHI---PSPNIVSWTALISAHSNSPL---SLNIFL 85 (575)
Q Consensus 12 ~~~~~~~~~~~~~~~~~g~~~~~~~~~li~~~~~~g~~~~A~~~f~~m---~~~~~~~~~~li~~~~~~g~---a~~~~~ 85 (575)
.+....+.+++.........+...+..+...+.+.|++++|.++|++. .+.+...+..+...+...|+ |+..++
T Consensus 28 ~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~ 107 (765)
T PRK10049 28 AGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAK 107 (765)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 455566677777666533345556899999999999999999999984 34456677788888888888 999999
Q ss_pred HHhhCCCCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCC-C
Q 008183 86 SMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE-R 164 (575)
Q Consensus 86 ~m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-~ 164 (575)
+..+.. +.+.. +..+-.++...| +.+.|...++.+++.. +.+..++..+...+.+.|..+.|.+.++.... |
T Consensus 108 ~~l~~~----P~~~~-~~~la~~l~~~g-~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p 180 (765)
T PRK10049 108 QLVSGA----PDKAN-LLALAYVYKRAG-RHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTP 180 (765)
T ss_pred HHHHhC----CCCHH-HHHHHHHHHHCC-CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCH
Confidence 998842 33444 777777888888 9999999999999976 44566667788889999999999999998776 1
Q ss_pred Cc------chHHHHHHHHHh-----CCCc---hHHHHHHHHhHHC-CCCcCHH-HHH----HHHHHHHhcccHHHHHHHH
Q 008183 165 DV------VCYGAMIVGFAQ-----NSRL---VDSLSVFADMRSS-DVGSTMY-CVS----GALRAAAELAAMEQCRVIH 224 (575)
Q Consensus 165 ~~------~~~~~li~~~~~-----~g~~---~~A~~~~~~m~~~-g~~p~~~-t~~----~ll~~~~~~~~~~~a~~~~ 224 (575)
+. .....++..... .+++ ++|++.++.+.+. ...|+.. .+. ..+.++...++.++|...|
T Consensus 181 ~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~ 260 (765)
T PRK10049 181 AEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEY 260 (765)
T ss_pred HHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 10 112222332221 2234 7789999988754 2233321 111 1134556779999999999
Q ss_pred HHHHHhCCC-CchhHHHHHHHHHHccCCHHHHHHHHhhhCCC-CC-----hhhHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 008183 225 GHAVVSGLD-RNVIVGTGLIDGYGKAGIVSDARRVFDENLSV-LN-----SIAWNAMMAGYAQQGDQSTVLELFHLLEMR 297 (575)
Q Consensus 225 ~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 297 (575)
+.+.+.+.+ |+ .....+..+|...|++++|++.|++++.. |. ...+..+..++...|++++|..+++.+...
T Consensus 261 ~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~ 339 (765)
T PRK10049 261 QRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINN 339 (765)
T ss_pred HHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhc
Confidence 999887632 22 22233577899999999999999985442 22 234566777889999999999999999875
Q ss_pred CC-----------CCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHH
Q 008183 298 GF-----------APDE---YSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIA 362 (575)
Q Consensus 298 g~-----------~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~ 362 (575)
.. .|+. ..+..+...+...|++++|.+.++++... .|+ ...+..+...+...|++++|++.+
T Consensus 340 ~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~---~P~n~~l~~~lA~l~~~~g~~~~A~~~l 416 (765)
T PRK10049 340 SPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN---APGNQGLRIDYASVLQARGWPRAAENEL 416 (765)
T ss_pred CCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 21 2342 24456667788899999999999998543 354 788899999999999999999999
Q ss_pred HhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchh
Q 008183 363 MAM-PFEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSA 407 (575)
Q Consensus 363 ~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 407 (575)
++. .+.|+ ...+..+...+...|++++|+.+++++++..|+++.+
T Consensus 417 ~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 417 KKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 988 56776 6777778888899999999999999999999998754
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.5e-14 Score=152.14 Aligned_cols=216 Identities=12% Similarity=0.004 Sum_probs=171.8
Q ss_pred ccHHHHHHHHHHHHHhC-C-CCchhHHHHHHHHHHccCCHHHHHHHHhhhCC-CC-ChhhHHHHHHHHHHcCChHHHHHH
Q 008183 215 AAMEQCRVIHGHAVVSG-L-DRNVIVGTGLIDGYGKAGIVSDARRVFDENLS-VL-NSIAWNAMMAGYAQQGDQSTVLEL 290 (575)
Q Consensus 215 ~~~~~a~~~~~~~~~~g-~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~li~~~~~~g~~~~A~~l 290 (575)
+.+++|...++..++.+ . +.....++.+...|...|++++|...|++.+. .| +..+|..+...+...|++++|+..
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~ 387 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEED 387 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 56788888898888765 2 33456788888899999999999999998655 33 456888888899999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCC
Q 008183 291 FHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM-PFE 368 (575)
Q Consensus 291 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~ 368 (575)
|++..+.. +.+..++..+...+...|++++|...|++.. .+.|+ ...+..+...+.+.|++++|...|++. ...
T Consensus 388 ~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal---~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 463 (615)
T TIGR00990 388 FDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSI---DLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF 463 (615)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 99987763 2356788888888999999999999999774 34565 677788888999999999999999887 445
Q ss_pred C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHH-------HHHHHHhCCCchHHHHHHHHHhhC
Q 008183 369 P-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVI-------VANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 369 p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~-------l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
| +...|+.+...+...|++++|...+++++++.|.+...+.. ....|...|++++|..++++....
T Consensus 464 P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l 537 (615)
T TIGR00990 464 PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII 537 (615)
T ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 5 47888899999999999999999999999988764333221 222344569999999999987654
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.1e-13 Score=142.84 Aligned_cols=193 Identities=12% Similarity=0.085 Sum_probs=154.2
Q ss_pred HHHHHHccCCHHHHHHHHhhhCCC-C-Ch--hhHHHHHHHHHHcCChHHHHHHHHHHHHcC-----CCCCHHHHHHHHHH
Q 008183 242 LIDGYGKAGIVSDARRVFDENLSV-L-NS--IAWNAMMAGYAQQGDQSTVLELFHLLEMRG-----FAPDEYSFLAVLTA 312 (575)
Q Consensus 242 li~~~~~~g~~~~A~~~~~~~~~~-~-~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----~~p~~~t~~~ll~a 312 (575)
.+-++.+.|+..++.+.|+. ++. . .+ .+--++..+|...+++++|+.+|+.+.... ..++......|.-+
T Consensus 298 rl~aL~~r~r~~~vi~~y~~-l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA 376 (822)
T PRK14574 298 RLGALLVRHQTADLIKEYEA-MEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYS 376 (822)
T ss_pred HHHHHHHhhhHHHHHHHHHH-hhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHH
Confidence 35567788999999999998 662 2 22 344567889999999999999999986643 12334446788999
Q ss_pred HHhcCCHHHHHHHHHHHHHhcC----------CCCC---hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHH
Q 008183 313 LCNAGLAGESEKWIERMKVRYK----------LEPG---LEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRAL 377 (575)
Q Consensus 313 ~~~~g~~~~a~~~~~~m~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l 377 (575)
+...+++++|..+++.+..... -.|+ ...+..++..+.-.|++.+|++.++++ ...| |...+..+
T Consensus 377 ~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~ 456 (822)
T PRK14574 377 LNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIAL 456 (822)
T ss_pred HHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 9999999999999999954211 0122 344556777888999999999999998 3445 68888899
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCC
Q 008183 378 LSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435 (575)
Q Consensus 378 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 435 (575)
...+...|.+.+|++.++.+..++|.+..+....+..+...|+|.+|..+.+.+.+..
T Consensus 457 A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 457 ASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999998887653
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-12 Score=122.62 Aligned_cols=384 Identities=12% Similarity=0.103 Sum_probs=270.9
Q ss_pred CCCCCCccHHHHHHHHHhhCC-CcccHHHHHHHHhH---cCCChHHHHHHHc-----------------------cCCCC
Q 008183 10 QPQNTSTDPRIVHARALKSSQ-ADRSIYNNLITNYS---KSNLLSYSLRLFN-----------------------HIPSP 62 (575)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~li~~~~---~~g~~~~A~~~f~-----------------------~m~~~ 62 (575)
.+++.+..+-.++.+|...|. -++.+.-.|+..-+ ...-+-.-++-|- +..++
T Consensus 126 IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PK 205 (625)
T KOG4422|consen 126 ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPK 205 (625)
T ss_pred HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCC
Confidence 345667778888888888887 66666665554322 2211111122222 22235
Q ss_pred ChhhHHHHHHHHhcCch---HHHHHHHHhhCCCCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHH
Q 008183 63 NIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139 (575)
Q Consensus 63 ~~~~~~~li~~~~~~g~---a~~~~~~m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 139 (575)
+..+|..||+|.++--. |.+++++-.... .+.+..+||.+|.+-+- ..++.+..+|+...+.||..|+|
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k---~kv~~~aFN~lI~~~S~-----~~~K~Lv~EMisqkm~Pnl~TfN 277 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAK---GKVYREAFNGLIGASSY-----SVGKKLVAEMISQKMTPNLFTFN 277 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhh---heeeHHhhhhhhhHHHh-----hccHHHHHHHHHhhcCCchHhHH
Confidence 66789999999988765 999999988877 88999999999988644 44589999999999999999999
Q ss_pred HHHHHHHhCCChHHHHHHH----HhcC----CCCcchHHHHHHHHHhCCCchH-HHHHHHHhHH----CCCCc----CHH
Q 008183 140 ALVHFYSRFRSPDNAKKVF----DEIR----ERDVVCYGAMIVGFAQNSRLVD-SLSVFADMRS----SDVGS----TMY 202 (575)
Q Consensus 140 ~li~~~~~~g~~~~A~~~f----~~m~----~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~----~g~~p----~~~ 202 (575)
+++...++.|+++.|++.+ .+|+ +|...+|..+|..+.+.+++.+ |.....+... ..++| |..
T Consensus 278 alL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~ 357 (625)
T KOG4422|consen 278 ALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNK 357 (625)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhH
Confidence 9999999999988776554 4554 4889999999999999998855 4444444433 22333 556
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhC----CCCc---hhHHHHHHHHHHccCCHHHHHHHHhhhCC---CCChhhHH
Q 008183 203 CVSGALRAAAELAAMEQCRVIHGHAVVSG----LDRN---VIVGTGLIDGYGKAGIVSDARRVFDENLS---VLNSIAWN 272 (575)
Q Consensus 203 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 272 (575)
.|.+.++.|.+..+.+.|.+++..+.... +.|+ .+-|..+..+.|....++.-...|+.+++ -|+..+-.
T Consensus 358 FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~ 437 (625)
T KOG4422|consen 358 FFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMI 437 (625)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHH
Confidence 78999999999999999999998775431 2333 34566788888999999999999999666 46777777
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-C---H----------HHHHHHHHHHH----HhcC
Q 008183 273 AMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG-L---A----------GESEKWIERMK----VRYK 334 (575)
Q Consensus 273 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g-~---~----------~~a~~~~~~m~----~~~~ 334 (575)
.++.+..-.|+++-.-++|.+|...|..-+...-..++.-+++.. . . +-|..+++... ....
T Consensus 438 ~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~ 517 (625)
T KOG4422|consen 438 HLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA 517 (625)
T ss_pred HHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Confidence 788888889999999999999888875555554444444444433 1 0 01111111110 0012
Q ss_pred CCCChhHHHHHHHHHhccCChHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 008183 335 LEPGLEHYTCLISAMGRAGRLEDAERIAMAM-------PFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDIN 401 (575)
Q Consensus 335 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 401 (575)
.+......+.+.-.+.|.|+.++|.++|.-. +..|......-|+.+-.+.++...|..+++-+...+
T Consensus 518 ~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 518 QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 2334556677778888999999998887655 344555555567777777788888888888886655
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.8e-12 Score=134.87 Aligned_cols=387 Identities=10% Similarity=-0.027 Sum_probs=283.0
Q ss_pred CCCCCccHHHHHHHHHhhCC-CcccHHHHHHHHhHcCCChHHHHHHHccCCCCChhhHHHHH---HHHhcCch---HHHH
Q 008183 11 PQNTSTDPRIVHARALKSSQ-ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALI---SAHSNSPL---SLNI 83 (575)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~g~-~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li---~~~~~~g~---a~~~ 83 (575)
+.++...|...+..+++..+ ..+.++ .++..+...|+.++|+..+++...|+...+..+. ..+...|+ |+++
T Consensus 46 r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiel 124 (822)
T PRK14574 46 RAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALAL 124 (822)
T ss_pred hCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 35666678888888877766 323455 8888888899999999999988776555444433 34566677 9999
Q ss_pred HHHHhhCCCCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCC
Q 008183 84 FLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE 163 (575)
Q Consensus 84 ~~~m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~ 163 (575)
|+++.+.. +-|...+..+...+...+ ..+.|.+.+..+.+.. |+...+-.++..+...++..+|...++++.+
T Consensus 125 y~kaL~~d----P~n~~~l~gLa~~y~~~~-q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 125 WQSSLKKD----PTNPDLISGMIMTQADAG-RGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHhhC----CCCHHHHHHHHHHHhhcC-CHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 99998853 234455666677778888 8888888888887753 4455555566666566777668888888865
Q ss_pred --C-CcchHHHHHHHHHhCCCchHHHHHHH------------------------------------------------Hh
Q 008183 164 --R-DVVCYGAMIVGFAQNSRLVDSLSVFA------------------------------------------------DM 192 (575)
Q Consensus 164 --~-~~~~~~~li~~~~~~g~~~~A~~~~~------------------------------------------------~m 192 (575)
| +...+..+..+..+.|-...|+++.. .+
T Consensus 198 ~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l 277 (822)
T PRK14574 198 LAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNL 277 (822)
T ss_pred hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHH
Confidence 3 34445555556666555554444433 22
Q ss_pred HH-CCCCcCH-H----HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCC
Q 008183 193 RS-SDVGSTM-Y----CVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL 266 (575)
Q Consensus 193 ~~-~g~~p~~-~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 266 (575)
.. .+..|.. . ...--+-++...++..++.+.++.+...|.+....+-.++.++|...++.++|+.+|.......
T Consensus 278 ~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~ 357 (822)
T PRK14574 278 LTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSD 357 (822)
T ss_pred HhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcc
Confidence 21 1111221 1 1223455667788999999999999998877778899999999999999999999999844421
Q ss_pred --------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCC-------------CCCHHH-HHHHHHHHHhcCCHHHHHH
Q 008183 267 --------NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGF-------------APDEYS-FLAVLTALCNAGLAGESEK 324 (575)
Q Consensus 267 --------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-------------~p~~~t-~~~ll~a~~~~g~~~~a~~ 324 (575)
+......|.-+|...+++++|..+++.+.+... .||-.. +..++..+.-.|++.+|++
T Consensus 358 ~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~ 437 (822)
T PRK14574 358 GKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQK 437 (822)
T ss_pred ccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 233357789999999999999999999987311 233333 3445666788999999999
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 008183 325 WIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDINP 402 (575)
Q Consensus 325 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 402 (575)
.++++... -+-|......+.+.+...|.+.+|++.++.. .+.|+ ..+......++...+++++|..+.+.+.+..|
T Consensus 438 ~le~l~~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~P 515 (822)
T PRK14574 438 KLEDLSST--APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSP 515 (822)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCC
Confidence 99999533 2335888899999999999999999999776 45675 67777888888999999999999999999999
Q ss_pred CCchh
Q 008183 403 YDDSA 407 (575)
Q Consensus 403 ~~~~~ 407 (575)
+++.+
T Consensus 516 e~~~~ 520 (822)
T PRK14574 516 EDIPS 520 (822)
T ss_pred CchhH
Confidence 98754
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.7e-12 Score=136.81 Aligned_cols=380 Identities=10% Similarity=-0.015 Sum_probs=278.6
Q ss_pred HHHHHhHcCCChHHHHHHHccCCCCChhhHHHHHHHHhcCc--h---HHHHHHHHhhCCCCCcCCChhhHHHHHHHHhhc
Q 008183 38 NLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSP--L---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASL 112 (575)
Q Consensus 38 ~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g--~---a~~~~~~m~~~~~~~~~p~~~t~~~ll~~~~~~ 112 (575)
.++..+.+.++++.|.++.+ ..+.+.. ..++.....+ . +...+..|-+.. +-+....-.+--.....
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~y~~~----~~~~~~l~q~~~~~~~~ 389 (987)
T PRK09782 318 ATLPVLLKEGQYDAAQKLLA-TLPANEM---LEERYAVSVATRNKAEALRLARLLYQQE----PANLTRLDQLTWQLMQN 389 (987)
T ss_pred HHHHHHHhccHHHHHHHHhc-CCCcchH---HHHHHhhccccCchhHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHc
Confidence 34788889999998888855 3333332 3444433322 2 666677777642 22433343444445567
Q ss_pred hhhHHHHHHHHHHHHhh-C-CCCchhHHHHHHHHHHhCCChH---HHHHH------------HH-------------hcC
Q 008183 113 SHAFLFGLSLHSLSLKL-S-LHDKPFCGSALVHFYSRFRSPD---NAKKV------------FD-------------EIR 162 (575)
Q Consensus 113 ~~~~~~a~~~~~~~~~~-g-~~~~~~~~~~li~~~~~~g~~~---~A~~~------------f~-------------~m~ 162 (575)
| +.++|.+++...... + -..+....+.|+..|.+.+.++ +|..+ .. ...
T Consensus 390 ~-~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 468 (987)
T PRK09782 390 G-QSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLL 468 (987)
T ss_pred c-cHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhc
Confidence 7 899999999988773 1 1235566778899999887733 33222 11 111
Q ss_pred C---C--CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchh
Q 008183 163 E---R--DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVI 237 (575)
Q Consensus 163 ~---~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 237 (575)
. + +...|..+..++.. +++++|+..|.+.... .|+......+..++...|++++|...++.+... +|+..
T Consensus 469 ~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~ 543 (987)
T PRK09782 469 GDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNE 543 (987)
T ss_pred ccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcH
Confidence 1 2 45567777777776 8999999988887764 477665555556667899999999999987654 45555
Q ss_pred HHHHHHHHHHccCCHHHHHHHHhhhCC-CC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008183 238 VGTGLIDGYGKAGIVSDARRVFDENLS-VL-NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315 (575)
Q Consensus 238 ~~~~li~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 315 (575)
.+..+...+.+.|++++|.+.|+..+. .| +...+..+.......|++++|+..|++..+. .|+...+..+..++.+
T Consensus 544 a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~ 621 (987)
T PRK09782 544 DLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQ 621 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 667778889999999999999998544 22 2223333333445569999999999999874 5678889999999999
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHH
Q 008183 316 AGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASK 392 (575)
Q Consensus 316 ~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~ 392 (575)
.|+.++|...+++.. .+.|+ ...++.+...+...|++++|...|++. ...| +...+..+..++...|++++|+.
T Consensus 622 lG~~deA~~~l~~AL---~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~ 698 (987)
T PRK09782 622 RHNVPAAVSDLRAAL---ELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQH 698 (987)
T ss_pred CCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999885 34676 678888888999999999999999987 5567 48889999999999999999999
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCCC
Q 008183 393 MGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436 (575)
Q Consensus 393 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 436 (575)
.++++++..|.+..+.........+..+++.|.+-+++--.-++
T Consensus 699 ~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 699 YARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 99999999999988888888888888888888887766554433
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.3e-14 Score=136.92 Aligned_cols=256 Identities=16% Similarity=0.097 Sum_probs=112.0
Q ss_pred HHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHH-HHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccC
Q 008183 172 MIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSG-ALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250 (575)
Q Consensus 172 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 250 (575)
+...+.+.|++++|++++.+.......|+...|-. +...+...++.+.|.+.++.+...+ +.+...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-cccc
Confidence 35566677888888887755443322344444333 3444555777888888888887765 3356667777777 6888
Q ss_pred CHHHHHHHHhhhCC-CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008183 251 IVSDARRVFDENLS-VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRG-FAPDEYSFLAVLTALCNAGLAGESEKWIER 328 (575)
Q Consensus 251 ~~~~A~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 328 (575)
++++|.+++....+ .++...+..++..+.+.++++++.++++...... .+++...|..+...+.+.|+.++|...+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999888876333 4566777888888999999999999999987543 355777788888889999999999999998
Q ss_pred HHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCc
Q 008183 329 MKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAMP--FEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDD 405 (575)
Q Consensus 329 m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 405 (575)
.... .|+ ....+.++..+...|+.+++.++++... ...|...|..+..++...|+.++|...+++..+..|.|+
T Consensus 172 al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 172 ALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 8543 675 7788899999999999999888877661 234566788999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHHh
Q 008183 406 SAYVIVANVLSGVGRWDEVAEVRKVMK 432 (575)
Q Consensus 406 ~~~~~l~~~~~~~g~~~~a~~~~~~m~ 432 (575)
.....+.+++...|+.++|.++.++.-
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 999999999999999999999987654
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.1e-10 Score=108.16 Aligned_cols=396 Identities=13% Similarity=0.050 Sum_probs=265.2
Q ss_pred ccHHHHHHHHhHcCCChHHHHHHHccCC-CCChh---hHHHHHHH--HhcCch----HHHHHHHHhhCCCC---------
Q 008183 33 RSIYNNLITNYSKSNLLSYSLRLFNHIP-SPNIV---SWTALISA--HSNSPL----SLNIFLSMLRHPTL--------- 93 (575)
Q Consensus 33 ~~~~~~li~~~~~~g~~~~A~~~f~~m~-~~~~~---~~~~li~~--~~~~g~----a~~~~~~m~~~~~~--------- 93 (575)
+.+-|.|+++-. .|.+.++.-+++.|. +.+.+ .--.|++. |-.+.+ -.+-|-.|...|..
T Consensus 116 V~~E~nL~kmIS-~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 116 VETENNLLKMIS-SREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred hcchhHHHHHHh-hcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 456777877644 788899999998885 21111 11111111 111111 23344444333210
Q ss_pred -------CcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcC----
Q 008183 94 -------SFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIR---- 162 (575)
Q Consensus 94 -------~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---- 162 (575)
..+-+..||.++|.+.++.. ..+.|..++.+........+..++|.+|.+-+-.-+ .++..+|.
T Consensus 195 vAdL~~E~~PKT~et~s~mI~Gl~K~~-~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm 269 (625)
T KOG4422|consen 195 VADLLFETLPKTDETVSIMIAGLCKFS-SLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKM 269 (625)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHH-hHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhc
Confidence 03346679999999999998 999999999988888778888999999876443322 55566664
Q ss_pred CCCcchHHHHHHHHHhCCCchH----HHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHH-HHHHHHHHHH----hCCC
Q 008183 163 ERDVVCYGAMIVGFAQNSRLVD----SLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQ-CRVIHGHAVV----SGLD 233 (575)
Q Consensus 163 ~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~-a~~~~~~~~~----~g~~ 233 (575)
.||..|+|+++++.++.|+++. |++++.+|++-|+.|...+|..+|..+.+.++..+ +..+...+.. ..+.
T Consensus 270 ~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fk 349 (625)
T KOG4422|consen 270 TPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFK 349 (625)
T ss_pred CCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCccc
Confidence 4899999999999999998764 56788899999999999999999998888877754 3333333322 2233
Q ss_pred C----chhHHHHHHHHHHccCCHHHHHHHHhhhCC--------CCC---hhhHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 008183 234 R----NVIVGTGLIDGYGKAGIVSDARRVFDENLS--------VLN---SIAWNAMMAGYAQQGDQSTVLELFHLLEMRG 298 (575)
Q Consensus 234 ~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 298 (575)
| |...+...++.|.+..+.+-|.++..- +. .++ ..-|..+....++....+.-+..|+.|.-.-
T Consensus 350 p~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~l-l~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~ 428 (625)
T KOG4422|consen 350 PITPTDNKFFQSAMSICSSLRDLELAYQVHGL-LKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSA 428 (625)
T ss_pred CCCCchhHHHHHHHHHHHHhhhHHHHHHHHHH-HHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccce
Confidence 3 455666778888888888888887654 33 111 2345667778888889999999999998777
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccC-Ch--------HH-----HHHHHH-
Q 008183 299 FAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAG-RL--------ED-----AERIAM- 363 (575)
Q Consensus 299 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-~~--------~~-----A~~~~~- 363 (575)
.-|+..+...++.|..-.|.++-..+++..+ ..+|-.-+...-.-+...+++.. +. .. |..+++
T Consensus 429 y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~-~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~ 507 (625)
T KOG4422|consen 429 YFPHSQTMIHLLRALDVANRLEVIPRIWKDS-KEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEA 507 (625)
T ss_pred ecCCchhHHHHHHHHhhcCcchhHHHHHHHH-HHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999888888888 45554333333333344444433 11 11 111221
Q ss_pred ------hC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---CCCch--hHHHHHHHHHhCCCchHHHHHHHHH
Q 008183 364 ------AM-PFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDIN---PYDDS--AYVIVANVLSGVGRWDEVAEVRKVM 431 (575)
Q Consensus 364 ------~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m 431 (575)
+| ...-.....+.++-.+.+.|..++|.+++..+.+.+ |..+. +..-|++.-...+....|..+++-|
T Consensus 508 ~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 508 YESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 11 122235556666777788999999999998886533 43332 3345666667778888899999888
Q ss_pred hhCCC
Q 008183 432 KDRRV 436 (575)
Q Consensus 432 ~~~~~ 436 (575)
...+.
T Consensus 588 ~~~n~ 592 (625)
T KOG4422|consen 588 SAFNL 592 (625)
T ss_pred HHcCc
Confidence 76554
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=4e-10 Score=116.65 Aligned_cols=423 Identities=12% Similarity=0.075 Sum_probs=290.9
Q ss_pred CccHHHHHHHHHhhCCCcccHHHHHHHHhHcCCChHHHHHHHccCC--CCChhhHHHHHHH--HhcCch---HHHHHHHH
Q 008183 15 STDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIP--SPNIVSWTALISA--HSNSPL---SLNIFLSM 87 (575)
Q Consensus 15 ~~~~~~~~~~~~~~g~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~--~~~~g~---a~~~~~~m 87 (575)
.+.+.+-|..+++..++|....--=.......+++-.|..+|.... .|...+=..+..+ +.+.|. |+..|...
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ra 225 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERA 225 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHH
Confidence 4566666666666554333221111222334678999999998742 2222221222222 334444 88888888
Q ss_pred hhCCCCCcCCChhhHHHHHHHHh----hchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCC
Q 008183 88 LRHPTLSFLPNQRTLASLFKTCA----SLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE 163 (575)
Q Consensus 88 ~~~~~~~~~p~~~t~~~ll~~~~----~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~ 163 (575)
.+ +.|+...-...|..+. ... .+..|.+++....+.. +.++.+.+.|.+.|.-.|++..++.+...+..
T Consensus 226 lq-----Ldp~~v~alv~L~~~~l~~~d~~-s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~ 298 (1018)
T KOG2002|consen 226 LQ-----LDPTCVSALVALGEVDLNFNDSD-SYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIK 298 (1018)
T ss_pred Hh-----cChhhHHHHHHHHHHHHHccchH-HHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 87 4453332222222211 122 4666777777666654 56888999999999999999999999887765
Q ss_pred CC------cchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHH--HHHHHHHHHhcccHHHHHHHHHHHHHhCCCCc
Q 008183 164 RD------VVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYC--VSGALRAAAELAAMEQCRVIHGHAVVSGLDRN 235 (575)
Q Consensus 164 ~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 235 (575)
.+ ..+|-.+.++|...|++++|...|.+.... .||.++ +..+...+.+.|+++.+...|+.+.+.. +.+
T Consensus 299 ~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~ 375 (1018)
T KOG2002|consen 299 NTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNN 375 (1018)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cch
Confidence 32 346888999999999999999999887654 455543 4556788889999999999999998873 566
Q ss_pred hhHHHHHHHHHHccC----CHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHH----HHcCCCCCHHH
Q 008183 236 VIVGTGLIDGYGKAG----IVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLL----EMRGFAPDEYS 305 (575)
Q Consensus 236 ~~~~~~li~~~~~~g----~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m----~~~g~~p~~~t 305 (575)
..+...|...|...+ ..+.|..++.+... +.|...|-.+...|-+ +++..++..|... ...+-.+....
T Consensus 376 ~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~ 454 (1018)
T KOG2002|consen 376 YETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEV 454 (1018)
T ss_pred HHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHH
Confidence 778888888888775 56777777777333 3466677666555544 4555557777544 45566688899
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcC--CCCChh------HHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HHHHH
Q 008183 306 FLAVLTALCNAGLAGESEKWIERMKVRYK--LEPGLE------HYTCLISAMGRAGRLEDAERIAMAM-PFEPD-AAVWR 375 (575)
Q Consensus 306 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~~p~~~------~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~ 375 (575)
.|.+.......|+++.|...|.....+.. ..+|.. +--.+...+-..++.+.|.+.|..+ ...|. +..|-
T Consensus 455 LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~yl 534 (1018)
T KOG2002|consen 455 LNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYL 534 (1018)
T ss_pred HHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHH
Confidence 99999999999999999999987754411 223331 2223445556678999999999888 44676 55666
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCCCccCCceeEEEEC
Q 008183 376 ALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVK 448 (575)
Q Consensus 376 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~ 448 (575)
-|+......++..+|...++.+++.+..++.++..+.+.|.+...|..|.+-|+...++-...++..|.+.++
T Consensus 535 Rl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLG 607 (1018)
T KOG2002|consen 535 RLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALG 607 (1018)
T ss_pred HhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhh
Confidence 6665555668899999999999999999999999999999999999999998887776554444444544433
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.1e-11 Score=112.85 Aligned_cols=402 Identities=12% Similarity=0.079 Sum_probs=248.5
Q ss_pred cCCCCCCCCccHHHHHHHHHhhCC-CcccHH-HHHHHHhHcCCChHHHHHHHcc----CCCCCh----hhHHHHHHHHhc
Q 008183 7 QQPQPQNTSTDPRIVHARALKSSQ-ADRSIY-NNLITNYSKSNLLSYSLRLFNH----IPSPNI----VSWTALISAHSN 76 (575)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~-~~li~~~~~~g~~~~A~~~f~~----m~~~~~----~~~~~li~~~~~ 76 (575)
++-.......+|..-+..+++... |+.... -.+-+.|.+...+.+|.+.++- .|.-+- ...|.+--.+.+
T Consensus 209 qqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq 288 (840)
T KOG2003|consen 209 QQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQ 288 (840)
T ss_pred HHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEe
Confidence 333333334455555556666665 554322 2234556666777777776642 232111 123333334667
Q ss_pred Cch---HHHHHHHHhhCCCCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCc------------hhHHHHH
Q 008183 77 SPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK------------PFCGSAL 141 (575)
Q Consensus 77 ~g~---a~~~~~~m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~------------~~~~~~l 141 (575)
.|. |+..|+...+ ..||..+-..++-.+...| +-+..++.|..++..-..+| ....|--
T Consensus 289 ~gqy~dainsfdh~m~-----~~pn~~a~~nl~i~~f~i~-d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ea 362 (840)
T KOG2003|consen 289 AGQYDDAINSFDHCME-----EAPNFIAALNLIICAFAIG-DAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEA 362 (840)
T ss_pred cccchhhHhhHHHHHH-----hCccHHhhhhhhhhheecC-cHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHH
Confidence 776 8888888777 4577665444444444556 77778888877765432222 2222211
Q ss_pred H-----HHHHhCC--ChHHHH----HHHHhcCCCCcch---HH------------------HHHHHHHhCCCchHHHHHH
Q 008183 142 V-----HFYSRFR--SPDNAK----KVFDEIRERDVVC---YG------------------AMIVGFAQNSRLVDSLSVF 189 (575)
Q Consensus 142 i-----~~~~~~g--~~~~A~----~~f~~m~~~~~~~---~~------------------~li~~~~~~g~~~~A~~~~ 189 (575)
| .-.-+.. +.+++. ++..-...||-.. |. .-..-|.++|+++.|++++
T Consensus 363 i~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieil 442 (840)
T KOG2003|consen 363 IKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEIL 442 (840)
T ss_pred HhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHH
Confidence 1 1111111 111111 1111111222110 11 0123467888888888888
Q ss_pred HHhHHCCCCcCHHHHH--HHHH----------------------------------HHHhcccHHHHHHHHHHHHHhCCC
Q 008183 190 ADMRSSDVGSTMYCVS--GALR----------------------------------AAAELAAMEQCRVIHGHAVVSGLD 233 (575)
Q Consensus 190 ~~m~~~g~~p~~~t~~--~ll~----------------------------------~~~~~~~~~~a~~~~~~~~~~g~~ 233 (575)
.-+.+..-+.-...-+ +++. .....|++++|...|++.+...-.
T Consensus 443 kv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas 522 (840)
T KOG2003|consen 443 KVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS 522 (840)
T ss_pred HHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH
Confidence 7775433221111100 0110 111237788888888887765422
Q ss_pred CchhHHHHHHHHHHccCCHHHHHHHHhhhCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008183 234 RNVIVGTGLIDGYGKAGIVSDARRVFDENLS---VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL 310 (575)
Q Consensus 234 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 310 (575)
-....|| +.-.+-+.|++++|++.|-+ +. ..++...-.+.+.|-...++..|++++-+.... ++.|...+.-|.
T Consensus 523 c~ealfn-iglt~e~~~~ldeald~f~k-lh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~ 599 (840)
T KOG2003|consen 523 CTEALFN-IGLTAEALGNLDEALDCFLK-LHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLA 599 (840)
T ss_pred HHHHHHH-hcccHHHhcCHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHH
Confidence 2222333 33346678889999988876 33 345555556677788888899999888665543 555677888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhcCC-CCChhHHHHHHHHHhccCChHHHHHHHHhCC-CCCCHHHHHHHHHHHH-HcCCh
Q 008183 311 TALCNAGLAGESEKWIERMKVRYKL-EPGLEHYTCLISAMGRAGRLEDAERIAMAMP-FEPDAAVWRALLSFSA-IHGKA 387 (575)
Q Consensus 311 ~a~~~~g~~~~a~~~~~~m~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~-~~g~~ 387 (575)
..|-+.|+-.+|.+.+- ..+.. +.+..+..-|..-|....-+++|..+|++.. ++|+..-|..++..|. +.|++
T Consensus 600 dlydqegdksqafq~~y---dsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgny 676 (840)
T KOG2003|consen 600 DLYDQEGDKSQAFQCHY---DSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNY 676 (840)
T ss_pred HHhhcccchhhhhhhhh---hcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccH
Confidence 99999999999998875 33343 4468888888888899999999999999984 7899999999998775 57999
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCC
Q 008183 388 DMASKMGKRLIDINPYDDSAYVIVANVLSGVGR 420 (575)
Q Consensus 388 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 420 (575)
+.|..+++.....-|.+......|++.+...|.
T Consensus 677 qka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 677 QKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 999999999999999999999999999888875
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.45 E-value=4e-10 Score=115.87 Aligned_cols=329 Identities=11% Similarity=0.069 Sum_probs=245.8
Q ss_pred chhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhc---CCCCcchHHHHHHHHHhCCCchHHHHH
Q 008183 112 LSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEI---RERDVVCYGAMIVGFAQNSRLVDSLSV 188 (575)
Q Consensus 112 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m---~~~~~~~~~~li~~~~~~g~~~~A~~~ 188 (575)
.| +++.|..++.++++.. +.+...|-.|-..|-..|+.+++...+-.. ...|..-|-.+..-..+.|++++|.-.
T Consensus 152 rg-~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 152 RG-DLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred hC-CHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 37 9999999999999987 556778999999999999999998876543 234778899998889999999999999
Q ss_pred HHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHH----HHHHHHHccCCHHHHHHHHhhhCC
Q 008183 189 FADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGT----GLIDGYGKAGIVSDARRVFDENLS 264 (575)
Q Consensus 189 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~----~li~~~~~~g~~~~A~~~~~~~~~ 264 (575)
|.+..+.. +++...+---...|-+.|+...|..-+.++....-+.|..-.. ..+..|...++-+.|.+.+...+.
T Consensus 230 y~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 230 YSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99998753 4455555566677888999999999999888764323332222 335566677777888888877444
Q ss_pred ----CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCC---------------------------CCCHHHHHHHHHHH
Q 008183 265 ----VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGF---------------------------APDEYSFLAVLTAL 313 (575)
Q Consensus 265 ----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---------------------------~p~~~t~~~ll~a~ 313 (575)
.-+...+|.++..|.+...++.|......+..... .++...+ .+.-++
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL 387 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMICL 387 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhhh
Confidence 23456788888899999999999988888776211 2222221 122223
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCCC--ChhHHHHHHHHHhccCChHHHHHHHHhCCC---CCCHHHHHHHHHHHHHcCChH
Q 008183 314 CNAGLAGESEKWIERMKVRYKLEP--GLEHYTCLISAMGRAGRLEDAERIAMAMPF---EPDAAVWRALLSFSAIHGKAD 388 (575)
Q Consensus 314 ~~~g~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~p~~~~~~~ll~~~~~~g~~~ 388 (575)
.+....+....+.... ....+.| +...|.-+.++|...|++.+|.++|..+-. --+...|--+...|...|..+
T Consensus 388 ~~L~~~e~~e~ll~~l-~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 388 VHLKERELLEALLHFL-VEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hcccccchHHHHHHHH-HHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 3444444444444434 4445334 478899999999999999999999999821 224778999999999999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCCCccCCceeEE
Q 008183 389 MASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWI 445 (575)
Q Consensus 389 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~ 445 (575)
+|.+.++.++...|++..+-..|...|.+.|+.++|.+++..+..-+-..-+++.|-
T Consensus 467 ~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~ 523 (895)
T KOG2076|consen 467 EAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWE 523 (895)
T ss_pred HHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhcccc
Confidence 999999999999999999999999999999999999999998763332222445553
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.8e-10 Score=116.24 Aligned_cols=274 Identities=12% Similarity=0.054 Sum_probs=188.2
Q ss_pred CCChHHHHHHHHhcCCC--Ccch-HHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHH--HHHHHHHhcccHHHHHH
Q 008183 148 FRSPDNAKKVFDEIRER--DVVC-YGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVS--GALRAAAELAAMEQCRV 222 (575)
Q Consensus 148 ~g~~~~A~~~f~~m~~~--~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~ 222 (575)
.|+++.|++.+...++. +... |-....+..+.|+++.|.+.|.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 58888888888776553 2222 322233447788888888888888653 45543332 33556677888888888
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCC---Ch--------hhHHHHHHHHHHcCChHHHHHHH
Q 008183 223 IHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL---NS--------IAWNAMMAGYAQQGDQSTVLELF 291 (575)
Q Consensus 223 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~--------~~~~~li~~~~~~g~~~~A~~l~ 291 (575)
.++.+.+.. +.+..+...+...|.+.|++++|.+++.. +.+. +. .+|..++.......+.+...+++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~-l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPS-MAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 888887765 55677888888888888888888888877 4311 11 13333444444455556666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC
Q 008183 292 HLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEPD 370 (575)
Q Consensus 292 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 370 (575)
+.+.+. .+.+......+..++...|+.++|..++++... ..|+... .++.+....++.+++.+..++. ...|+
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 665433 344667777788888888999998888877643 2444422 2233334558888888888776 34564
Q ss_pred -HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHh
Q 008183 371 -AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432 (575)
Q Consensus 371 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 432 (575)
+..+..+...|...+++++|.+.|+.+.+..|++ ..|..|..++.+.|+.++|.+++++-.
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6667788888888889999999999988888854 457788888889999998888887543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3e-11 Score=120.32 Aligned_cols=277 Identities=10% Similarity=0.033 Sum_probs=216.2
Q ss_pred ChHHHHHHHHhcCC--CCcc-hHHHHHHHHHhCCCchHHHHHHHHhHHCCC--CcCHHHHHHHHHHHHhcccHHHHHHHH
Q 008183 150 SPDNAKKVFDEIRE--RDVV-CYGAMIVGFAQNSRLVDSLSVFADMRSSDV--GSTMYCVSGALRAAAELAAMEQCRVIH 224 (575)
Q Consensus 150 ~~~~A~~~f~~m~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~~~~~~a~~~~ 224 (575)
+..+|...|..++. +|.. ....+-.+|...+++++|.++|+..++... .-+..+|.+.|..+-+.- +..++
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v----~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV----ALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH----HHHHH
Confidence 45789999988765 3443 345567889999999999999999976421 125678888887654321 22222
Q ss_pred H-HHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 008183 225 G-HAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAP 301 (575)
Q Consensus 225 ~-~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 301 (575)
. .+++. -+-.+.+|-++.+.|+-.++.+.|++.|++++. +....+|+.+..-+.....+|+|...|+..... .|
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--~~ 486 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--DP 486 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--Cc
Confidence 2 22322 255688999999999999999999999998666 447889999999999999999999999987653 22
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHH
Q 008183 302 -DEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRAL 377 (575)
Q Consensus 302 -~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l 377 (575)
+-..|..+...|.+.++++.|+-.|+... .+.|. ......+...+-+.|+.++|++++++. .+.| |+..--.-
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 33456667778999999999999998663 66776 556667778889999999999999998 3344 55555556
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCCC
Q 008183 378 LSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436 (575)
Q Consensus 378 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 436 (575)
+..+...+++++|.+.++++.+.-|++..+|..++..|.+.|+.+.|..-|..+.+-..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 66777889999999999999999999999999999999999999999998888776543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1e-09 Score=113.68 Aligned_cols=91 Identities=15% Similarity=0.146 Sum_probs=38.1
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCCchhHHHHHHH
Q 008183 339 LEHYTCLISAMGRAGRLEDAERIAMAMP--FEPDAAVWRALLSFSAIHGKADMASKMGKRLIDIN--PYDDSAYVIVANV 414 (575)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~ 414 (575)
...-|.+.-.++..|++.+|..+|.... ...+..+|-.+...|...|++..|.++|+...+.. ..++.....|..+
T Consensus 646 ~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara 725 (1018)
T KOG2002|consen 646 MYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARA 725 (1018)
T ss_pred hhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHH
Confidence 3333444444444444444444444441 11123344444444444444444444444444321 1222334444444
Q ss_pred HHhCCCchHHHHHHH
Q 008183 415 LSGVGRWDEVAEVRK 429 (575)
Q Consensus 415 ~~~~g~~~~a~~~~~ 429 (575)
+.++|++.+|.+.+.
T Consensus 726 ~y~~~~~~eak~~ll 740 (1018)
T KOG2002|consen 726 WYEAGKLQEAKEALL 740 (1018)
T ss_pred HHHhhhHHHHHHHHH
Confidence 444444444444443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.3e-08 Score=97.59 Aligned_cols=387 Identities=12% Similarity=0.106 Sum_probs=281.8
Q ss_pred HcCCChHHHHHHHccCC---CCChhhHHHHHHHHhcCch---HHHHHHHHhhCCCCCcCCChh-hHHHHHHHHhhchhhH
Q 008183 44 SKSNLLSYSLRLFNHIP---SPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQR-TLASLFKTCASLSHAF 116 (575)
Q Consensus 44 ~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~---a~~~~~~m~~~~~~~~~p~~~-t~~~ll~~~~~~~~~~ 116 (575)
-..+++..|+.+|++.. .++...|-.-+..=.++.. |..+|+.... ..|-+. .|.--+-.=-..| ++
T Consensus 84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt-----~lPRVdqlWyKY~ymEE~Lg-Ni 157 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVT-----ILPRVDQLWYKYIYMEEMLG-NI 157 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHH-----hcchHHHHHHHHHHHHHHhc-cc
Confidence 34567788999998875 4677778777777666655 9999998887 444332 2222222333456 89
Q ss_pred HHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcC--CCCcchHHHHHHHHHhCCCchHHHHHHHHhHH
Q 008183 117 LFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIR--ERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194 (575)
Q Consensus 117 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 194 (575)
..|+++|+...+ ..|+...|++.|++=.+...++.|..+++... .|++.+|--...-=-++|+...|..+|....+
T Consensus 158 ~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie 235 (677)
T KOG1915|consen 158 AGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIE 235 (677)
T ss_pred HHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 999999998876 58999999999999999999999999999854 58999998888888899999999999998866
Q ss_pred CCCCcCH----HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHccCCHHHHHHHH--------h
Q 008183 195 SDVGSTM----YCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRN--VIVGTGLIDGYGKAGIVSDARRVF--------D 260 (575)
Q Consensus 195 ~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~--------~ 260 (575)
. -.|. ..|.+...-=.....++.|.-+|...+.. ++.+ ...|..+...--+-|+.....+.. +
T Consensus 236 ~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE 312 (677)
T KOG1915|consen 236 F--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYE 312 (677)
T ss_pred H--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHH
Confidence 3 2223 33444444444567888899999988876 3444 456666666666667655444433 1
Q ss_pred hhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHH---HhcCCHHHHHHHHHH
Q 008183 261 ENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDE-------YSFLAVLTAL---CNAGLAGESEKWIER 328 (575)
Q Consensus 261 ~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~ll~a~---~~~g~~~~a~~~~~~ 328 (575)
..+. +-|-.+|--.+..--..|+.+...++|++.... ++|-. ..|.-+=-+| ....+++.+.++++.
T Consensus 313 ~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~ 391 (677)
T KOG1915|consen 313 KEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQA 391 (677)
T ss_pred HHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 2121 346677877777777889999999999998875 55532 2232222222 246788999999987
Q ss_pred HHHhcCCCCC-hhHHHHHHHHH----hccCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 008183 329 MKVRYKLEPG-LEHYTCLISAM----GRAGRLEDAERIAMAM-PFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINP 402 (575)
Q Consensus 329 m~~~~~~~p~-~~~~~~li~~~----~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 402 (575)
.. + +-|. ..|+.-+=-+| .++.++..|.+++... |.-|-..++...|..-.+.++++....++++.++.+|
T Consensus 392 ~l-~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~P 468 (677)
T KOG1915|consen 392 CL-D--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSP 468 (677)
T ss_pred HH-h--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcCh
Confidence 73 3 4454 45555444444 5788899999988765 7788888888888888889999999999999999999
Q ss_pred CCchhHHHHHHHHHhCCCchHHHHHHHHHhhCCCccCCceeEE
Q 008183 403 YDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWI 445 (575)
Q Consensus 403 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~ 445 (575)
.+..+|.-....-...|+++.|..+|+...++.....|..-|-
T Consensus 469 e~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwk 511 (677)
T KOG1915|consen 469 ENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWK 511 (677)
T ss_pred HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHH
Confidence 9988998888888899999999999998877654444544453
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.8e-09 Score=109.06 Aligned_cols=277 Identities=13% Similarity=-0.005 Sum_probs=209.9
Q ss_pred hhhHHHHHHHHHHHHhhCCCCchhHHHHH-HHHHHhCCChHHHHHHHHhcCC--CCcchHH--HHHHHHHhCCCchHHHH
Q 008183 113 SHAFLFGLSLHSLSLKLSLHDKPFCGSAL-VHFYSRFRSPDNAKKVFDEIRE--RDVVCYG--AMIVGFAQNSRLVDSLS 187 (575)
Q Consensus 113 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-i~~~~~~g~~~~A~~~f~~m~~--~~~~~~~--~li~~~~~~g~~~~A~~ 187 (575)
| +++.|++......+.. +++.++-.+ .....+.|+++.|...|.++.+ |+....- .....+...|++++|..
T Consensus 98 G-d~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 98 G-DYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred C-CHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 5 8888887776654432 233444333 3444789999999999999876 3433222 33567889999999999
Q ss_pred HHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCch-------hHHHHHHHHHHccCCHHHHHHHHh
Q 008183 188 VFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNV-------IVGTGLIDGYGKAGIVSDARRVFD 260 (575)
Q Consensus 188 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~ 260 (575)
.++++.+.. +-+......+...+.+.|+++.+..++..+.+.+..++. ..|..++....+..+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999998754 334567788889999999999999999999988754332 133344444455566677778887
Q ss_pred hhCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC
Q 008183 261 ENLS---VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEP 337 (575)
Q Consensus 261 ~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 337 (575)
. ++ +.+......+..++...|+.++|.+++++..+. .||.... ++.+....++.+++.+..+...++ .|
T Consensus 254 ~-lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~---~P 325 (398)
T PRK10747 254 N-QSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ---HG 325 (398)
T ss_pred h-CCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh---CC
Confidence 7 65 457778888999999999999999999998874 4444221 233444569999999999988654 45
Q ss_pred C-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 008183 338 G-LEHYTCLISAMGRAGRLEDAERIAMAM-PFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDIN 401 (575)
Q Consensus 338 ~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 401 (575)
+ ...+.++...+.+.|++++|.+.|+.. ...|+..++..|...+...|+.++|.+++++.+.+-
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 5 567889999999999999999999998 678999999999999999999999999999987643
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.9e-11 Score=116.98 Aligned_cols=280 Identities=15% Similarity=0.063 Sum_probs=217.0
Q ss_pred HHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCC------CCcchHHHHHHHHHhCCCchHHHHHH
Q 008183 116 FLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE------RDVVCYGAMIVGFAQNSRLVDSLSVF 189 (575)
Q Consensus 116 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~------~~~~~~~~li~~~~~~g~~~~A~~~~ 189 (575)
..+|...+.. +-.....+..+...+-.+|...+++++|+++|+.+.+ .+...|.+.+..+-+. -++..+
T Consensus 335 ~~~A~~~~~k-lp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 335 CREALNLFEK-LPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHh-hHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 4556666666 3333444557888889999999999999999999875 3778899888765432 223322
Q ss_pred HHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCC
Q 008183 190 ADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLN 267 (575)
Q Consensus 190 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~ 267 (575)
.+-.-.--+-.+.||.++.+.|+-+++.+.|.+.|+..++.. +...++|+.+..-+.....+|.|...|+.++. .++
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rh 488 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRH 488 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchh
Confidence 222111123456799999999999999999999999998864 33789999999999999999999999998554 455
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHH
Q 008183 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLI 346 (575)
Q Consensus 268 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li 346 (575)
-.+|.-|...|.+.++++.|+-.|++..+.+.. +.+....+...+-+.|+.|+|++++++.. .++|. ...----+
T Consensus 489 YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~---~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 489 YNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAI---HLDPKNPLCKYHRA 564 (638)
T ss_pred hHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHH---hcCCCCchhHHHHH
Confidence 566777888899999999999999999886433 56777777788889999999999999774 34553 32323345
Q ss_pred HHHhccCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCc
Q 008183 347 SAMGRAGRLEDAERIAMAM-PFEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDD 405 (575)
Q Consensus 347 ~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 405 (575)
..+...++.++|+..++++ .+.|+ ...+..+...|.+.|+.+.|+.-|..+.+++|.-.
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 5667789999999999999 36675 67788888999999999999999999999998643
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.5e-09 Score=108.63 Aligned_cols=278 Identities=11% Similarity=-0.041 Sum_probs=149.6
Q ss_pred hHHHHHHHHHHHHhhCCCCchhH-HHHHHHHHHhCCChHHHHHHHHhcCC--CCc--chHHHHHHHHHhCCCchHHHHHH
Q 008183 115 AFLFGLSLHSLSLKLSLHDKPFC-GSALVHFYSRFRSPDNAKKVFDEIRE--RDV--VCYGAMIVGFAQNSRLVDSLSVF 189 (575)
Q Consensus 115 ~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~f~~m~~--~~~--~~~~~li~~~~~~g~~~~A~~~~ 189 (575)
+++.|++......+.. |++.. +-.....+.+.|+.+.|...|.+..+ |+. ...-+....+.+.|+++.|.+.+
T Consensus 99 ~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l 176 (409)
T TIGR00540 99 DYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGV 176 (409)
T ss_pred CHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 6777777766655543 33222 22334556666777777777766532 232 12233455666677777777777
Q ss_pred HHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHH-------HccCCHHHHHHHHhhh
Q 008183 190 ADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGY-------GKAGIVSDARRVFDEN 262 (575)
Q Consensus 190 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~-------~~~g~~~~A~~~~~~~ 262 (575)
+++.+.. +-+......+...+...|+++.+.+.+..+.+.+..+.......-..++ ......+...+.+..
T Consensus 177 ~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~- 254 (409)
T TIGR00540 177 DKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN- 254 (409)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH-
Confidence 7776653 2234456666667777777777777777777765432222111111111 111222333334443
Q ss_pred CCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH--HHHHHHH--HHhcCCHHHHHHHHHHHHHhcCC
Q 008183 263 LSV---LNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYS--FLAVLTA--LCNAGLAGESEKWIERMKVRYKL 335 (575)
Q Consensus 263 ~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~ll~a--~~~~g~~~~a~~~~~~m~~~~~~ 335 (575)
.+. .+...+..+...+...|+.++|.+++++..+.. ||... +. ++.. ....++.+.+.+.++...+...-
T Consensus 255 ~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~-~l~~~~~l~~~~~~~~~~~~e~~lk~~p~ 331 (409)
T TIGR00540 255 QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLP-LCLPIPRLKPEDNEKLEKLIEKQAKNVDD 331 (409)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhH-HHHHhhhcCCCChHHHHHHHHHHHHhCCC
Confidence 331 356666666777777777777777777766642 22221 11 1111 12235556666666555333211
Q ss_pred CCChhHHHHHHHHHhccCChHHHHHHHHh--C-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008183 336 EPGLEHYTCLISAMGRAGRLEDAERIAMA--M-PFEPDAAVWRALLSFSAIHGKADMASKMGKRLID 399 (575)
Q Consensus 336 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~--m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 399 (575)
.|+.....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+.++|.+++++...
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 12113444566666666777777776662 2 3456666666666666666666666666666543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.6e-08 Score=96.96 Aligned_cols=410 Identities=11% Similarity=0.097 Sum_probs=307.7
Q ss_pred CCCCccHHHHHHHHHhhCCCcccHHHHHHHHhHcCCChHHHHHHHccCC--CCCh-hhHHHHHHHHhcCch---HHHHHH
Q 008183 12 QNTSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIP--SPNI-VSWTALISAHSNSPL---SLNIFL 85 (575)
Q Consensus 12 ~~~~~~~~~~~~~~~~~g~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~--~~~~-~~~~~li~~~~~~g~---a~~~~~ 85 (575)
+.....|+.++.+.+.....+..+|-.-+.+=.++..+..|+.+|++.. -|-+ ..|---+..=-..|+ |.++|.
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqife 165 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFE 165 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 4556789999999988766889999999999999999999999999864 1322 234333333223344 999999
Q ss_pred HHhhCCCCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCCC-
Q 008183 86 SMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRER- 164 (575)
Q Consensus 86 ~m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~- 164 (575)
.-.. ..|+...|.+.++-=.+.. ..+.|+.+++..+-. .|++..|-.....=-++|.+..|..+|+...+.
T Consensus 166 rW~~-----w~P~eqaW~sfI~fElRyk-eieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~ 237 (677)
T KOG1915|consen 166 RWME-----WEPDEQAWLSFIKFELRYK-EIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFL 237 (677)
T ss_pred HHHc-----CCCcHHHHHHHHHHHHHhh-HHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 9887 7899999999999999998 999999999988764 588889988888889999999999999887651
Q ss_pred -----CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcC--HHHHHHHHHHHHhcccHHHHHH--------HHHHHHH
Q 008183 165 -----DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGST--MYCVSGALRAAAELAAMEQCRV--------IHGHAVV 229 (575)
Q Consensus 165 -----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~--------~~~~~~~ 229 (575)
+...+++...-=.++..++.|.-+|.-.... ++.+ ...|......=-+-|+...... -|+.+++
T Consensus 238 ~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~ 316 (677)
T KOG1915|consen 238 GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVS 316 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHH
Confidence 2234455444445667788888888877664 2222 3344444433334454433222 2344444
Q ss_pred hCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC-CCCh---hhHHHHHH--------HHHHcCChHHHHHHHHHHHHc
Q 008183 230 SGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS-VLNS---IAWNAMMA--------GYAQQGDQSTVLELFHLLEMR 297 (575)
Q Consensus 230 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~---~~~~~li~--------~~~~~g~~~~A~~l~~~m~~~ 297 (575)
.+ +.|-.++--.+..-...|+.+...++|+.++. .|.. ..|.--|- .=....+.+.+.++|+...+.
T Consensus 317 ~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l 395 (677)
T KOG1915|consen 317 KN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL 395 (677)
T ss_pred hC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 43 56677777888888889999999999998765 2222 22332221 123578899999999999884
Q ss_pred CCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CH
Q 008183 298 GFAPDEYSFLAVLTALC----NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DA 371 (575)
Q Consensus 298 g~~p~~~t~~~ll~a~~----~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~ 371 (575)
++-...||.-+=-.|+ +..++..|.+++.... |.-|...++...|..-.+.+.++.+..++++. ...| |-
T Consensus 396 -IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c 471 (677)
T KOG1915|consen 396 -IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENC 471 (677)
T ss_pred -cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhh
Confidence 5556788877655554 4688999999998664 88999999999999999999999999999987 5566 68
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--chhHHHHHHHHHhCCCchHHHHHHHHHhhCC
Q 008183 372 AVWRALLSFSAIHGKADMASKMGKRLIDINPYD--DSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435 (575)
Q Consensus 372 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 435 (575)
.+|.-....-...|+.+.|..+|+-+++....+ ...|-..|+.-...|.++.|..+++++.++.
T Consensus 472 ~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 472 YAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 899988888889999999999999988755322 2367778888889999999999999998764
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.5e-12 Score=121.01 Aligned_cols=211 Identities=15% Similarity=0.076 Sum_probs=74.4
Q ss_pred hHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCC--CCcchHHHHHHHHHhCCCchHHHHHHHHh
Q 008183 115 AFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE--RDVVCYGAMIVGFAQNSRLVDSLSVFADM 192 (575)
Q Consensus 115 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m 192 (575)
+.+.+.+.++.+...+.. ++..+..++.. ...+++++|.+++...-+ ++...+..++..+.+.++++++.++++..
T Consensus 59 ~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~ 136 (280)
T PF13429_consen 59 DYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKL 136 (280)
T ss_dssp -------------------------------------------------------------H-HHHTT-HHHHHHHHHHH
T ss_pred cccccccccccccccccc-ccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHH
Confidence 555566666655554422 44455555555 456666666666554422 34455555666666666666666666665
Q ss_pred HHCC-CCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChh
Q 008183 193 RSSD-VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSI 269 (575)
Q Consensus 193 ~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~ 269 (575)
.... ..++...|......+.+.|+.++|...++..++.. |.|..+.+.++..+...|+.+++.+++..... +.|..
T Consensus 137 ~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~ 215 (280)
T PF13429_consen 137 EELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPD 215 (280)
T ss_dssp HH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCC
T ss_pred HhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHH
Confidence 4322 23344555555566666666666666666666653 33455566666666666666665555544111 33445
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008183 270 AWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERM 329 (575)
Q Consensus 270 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 329 (575)
.|..+..+|...|+.++|+..|++..+.. +.|..+...+..++...|+.++|.++..+.
T Consensus 216 ~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 216 LWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT---------------
T ss_pred HHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 55566666666666666666666655532 225555555666666666666666655443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.5e-08 Score=97.42 Aligned_cols=417 Identities=13% Similarity=0.056 Sum_probs=232.2
Q ss_pred CccHHHHHHHHHhhCCCcccHHHHHHHHhHcCCChHHHHHHHccCC--------CCChhhHHHHHHHHhcCch---HHHH
Q 008183 15 STDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIP--------SPNIVSWTALISAHSNSPL---SLNI 83 (575)
Q Consensus 15 ~~~~~~~~~~~~~~g~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~--------~~~~~~~~~li~~~~~~g~---a~~~ 83 (575)
-..|+.+.....+.-+.+..+|.+-...=-..|+.+...++.++-. +-|...|-.=..++-..|. +..+
T Consensus 422 YenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAI 501 (913)
T KOG0495|consen 422 YENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAI 501 (913)
T ss_pred HHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHH
Confidence 3446666666655544566666666666666777777777765432 1122223222222322222 2222
Q ss_pred HHHHhhCCCCCcCC--ChhhHHHHHHHHhhchhhHHHHHHHHHHH----------------------------------H
Q 008183 84 FLSMLRHPTLSFLP--NQRTLASLFKTCASLSHAFLFGLSLHSLS----------------------------------L 127 (575)
Q Consensus 84 ~~~m~~~~~~~~~p--~~~t~~~ll~~~~~~~~~~~~a~~~~~~~----------------------------------~ 127 (575)
......-| +.- -..||...-..|.+.+ .++-++.++... +
T Consensus 502 i~avigig---vEeed~~~tw~~da~~~~k~~-~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav 577 (913)
T KOG0495|consen 502 IRAVIGIG---VEEEDRKSTWLDDAQSCEKRP-AIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAV 577 (913)
T ss_pred HHHHHhhc---cccchhHhHHhhhHHHHHhcc-hHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 22222222 111 1134444444444444 444444444444 4
Q ss_pred hhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCC---CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHH
Q 008183 128 KLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE---RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCV 204 (575)
Q Consensus 128 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 204 (575)
..- +.....|-....-+...|++..|+.++++.-+ .+...|-+-+..-..+.++++|..+|.+... ..|+...|
T Consensus 578 ~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~ 654 (913)
T KOG0495|consen 578 EQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVW 654 (913)
T ss_pred HhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhh
Confidence 332 22333344444444445555555555554432 1334455555555555555566655555544 23444444
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcC
Q 008183 205 SGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQG 282 (575)
Q Consensus 205 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g 282 (575)
.--++.---++..++|.++++..++. ++.-.-.|-.+...+-+.++++.|.+.|..-.. +..+..|-.|...=-+.|
T Consensus 655 mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~ 733 (913)
T KOG0495|consen 655 MKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDG 733 (913)
T ss_pred HHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhc
Confidence 44444444455555566555555543 222234445555555555666666655554222 223345555555555556
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHH
Q 008183 283 DQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIA 362 (575)
Q Consensus 283 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 362 (575)
.+-+|..+|+.-...+.. |...|...|..=.+.|+.+.|..++.+...+ ++.+...|..-|.+..+.++-..+.+.+
T Consensus 734 ~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DAL 810 (913)
T KOG0495|consen 734 QLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDAL 810 (913)
T ss_pred chhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHH
Confidence 666666666666555433 5555666666666666666666665555332 2334555666666666655555555555
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCCCccCCce
Q 008183 363 MAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGR 442 (575)
Q Consensus 363 ~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 442 (575)
++. +.|+...-.+...+....+++.|.+.|.+.+..+|++..+|.-+...+...|.-++-.+++...... .|.-|.
T Consensus 811 kkc--e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~ 886 (913)
T KOG0495|consen 811 KKC--EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGE 886 (913)
T ss_pred Hhc--cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCc
Confidence 444 4456666677777888889999999999999999999999999999999999999999999888764 345566
Q ss_pred eEEE
Q 008183 443 SWIE 446 (575)
Q Consensus 443 s~~~ 446 (575)
.|..
T Consensus 887 ~W~a 890 (913)
T KOG0495|consen 887 LWQA 890 (913)
T ss_pred HHHH
Confidence 7763
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.8e-09 Score=109.65 Aligned_cols=291 Identities=9% Similarity=-0.041 Sum_probs=206.3
Q ss_pred hHHHHHHHHhc--Cch---HHHHHHHHhhCCCCCcCCChhhH-HHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHH
Q 008183 66 SWTALISAHSN--SPL---SLNIFLSMLRHPTLSFLPNQRTL-ASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139 (575)
Q Consensus 66 ~~~~li~~~~~--~g~---a~~~~~~m~~~~~~~~~p~~~t~-~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 139 (575)
....+..|... .|+ |.+.+.+..+ ..|+...+ -..-.+....| +.+.+.+.+....+....+...+.-
T Consensus 84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~-----~~~~~~~~~llaA~aa~~~g-~~~~A~~~l~~a~~~~p~~~l~~~~ 157 (409)
T TIGR00540 84 AQKQTEEALLKLAEGDYAKAEKLIAKNAD-----HAAEPVLNLIKAAEAAQQRG-DEARANQHLEEAAELAGNDNILVEI 157 (409)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCcCchHHHH
Confidence 34455555433 344 8888877666 34554333 33345556667 9999999999988765333334555
Q ss_pred HHHHHHHhCCChHHHHHHHHhcCC--C-CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHH---Hh
Q 008183 140 ALVHFYSRFRSPDNAKKVFDEIRE--R-DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA---AE 213 (575)
Q Consensus 140 ~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~---~~ 213 (575)
.....+...|+++.|...++.+.+ | +...+..+...|.+.|++++|.+++..+.+.++.+.......-..+. ..
T Consensus 158 ~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~ 237 (409)
T TIGR00540 158 ARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLD 237 (409)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 568888999999999999999875 3 66678899999999999999999999999987543332212122222 22
Q ss_pred cccHHHHHHHHHHHHHhC---CCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC-CCChhh---HHHHHHHHHHcCChHH
Q 008183 214 LAAMEQCRVIHGHAVVSG---LDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS-VLNSIA---WNAMMAGYAQQGDQST 286 (575)
Q Consensus 214 ~~~~~~a~~~~~~~~~~g---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~---~~~li~~~~~~g~~~~ 286 (575)
.+..+.+.+.+..+.+.. .+.+...+..+...+...|+.++|.+++++.++ .||... +..........++.++
T Consensus 238 ~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~ 317 (409)
T TIGR00540 238 EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEK 317 (409)
T ss_pred HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHH
Confidence 223333334555554432 124788999999999999999999999998666 455442 1222233345678889
Q ss_pred HHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHH
Q 008183 287 VLELFHLLEMRGFAPDE---YSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAM 363 (575)
Q Consensus 287 A~~l~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 363 (575)
+++.++...+. .|+. ....++...|.+.|++++|.+.|+.. ......|+...+..+...+.+.|+.++|.++++
T Consensus 318 ~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a-~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~ 394 (409)
T TIGR00540 318 LEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNV-AACKEQLDANDLAMAADAFDQAGDKAEAAAMRQ 394 (409)
T ss_pred HHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHh-HHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999887765 3433 45667888899999999999999954 234567998889999999999999999999998
Q ss_pred hC
Q 008183 364 AM 365 (575)
Q Consensus 364 ~m 365 (575)
+.
T Consensus 395 ~~ 396 (409)
T TIGR00540 395 DS 396 (409)
T ss_pred HH
Confidence 64
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.5e-08 Score=99.26 Aligned_cols=387 Identities=9% Similarity=0.032 Sum_probs=305.9
Q ss_pred CCCCCCccHHHHHHHHHhhCC---CcccHHHHHHHHhHcCCChHHHHHHHccCC---CCChhhHHHHHHHHhcCch---H
Q 008183 10 QPQNTSTDPRIVHARALKSSQ---ADRSIYNNLITNYSKSNLLSYSLRLFNHIP---SPNIVSWTALISAHSNSPL---S 80 (575)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~---a 80 (575)
...++....+.|..-++..|. .--.+|+.--+.|.+.+.++-|+.+|.... ..+...|......--..|. -
T Consensus 490 e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl 569 (913)
T KOG0495|consen 490 EDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESL 569 (913)
T ss_pred hhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHH
Confidence 345677788888888888887 345688888999999999999999998765 4566778777665555555 6
Q ss_pred HHHHHHHhhCCCCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHh
Q 008183 81 LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDE 160 (575)
Q Consensus 81 ~~~~~~m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 160 (575)
..+|.+.... ++-....|-...+..-..| ++..++.++..+.+... .+..+|-+-+..-.....++.|+.+|.+
T Consensus 570 ~Allqkav~~----~pkae~lwlM~ake~w~ag-dv~~ar~il~~af~~~p-nseeiwlaavKle~en~e~eraR~llak 643 (913)
T KOG0495|consen 570 EALLQKAVEQ----CPKAEILWLMYAKEKWKAG-DVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDELERARDLLAK 643 (913)
T ss_pred HHHHHHHHHh----CCcchhHHHHHHHHHHhcC-CcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 6677777764 3444555555566666778 99999999999998874 4778899999999999999999999998
Q ss_pred cCC--CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHH-HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchh
Q 008183 161 IRE--RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMY-CVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVI 237 (575)
Q Consensus 161 m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 237 (575)
... ++...|.--+..-.-.++.++|++++++..+. -|+-. .|..+-..+-+.++++.|+..|..=.+. ++-.+.
T Consensus 644 ar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ip 720 (913)
T KOG0495|consen 644 ARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIP 720 (913)
T ss_pred HhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCch
Confidence 764 67777877777777789999999999998773 56654 6677777888899999999888765554 345577
Q ss_pred HHHHHHHHHHccCCHHHHHHHHhhhC-C-CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008183 238 VGTGLIDGYGKAGIVSDARRVFDENL-S-VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315 (575)
Q Consensus 238 ~~~~li~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 315 (575)
.|-.|...--+.|.+-.|..+++... . +.+...|-..|..=.+.|+.+.|..+..+..+. .+-+...|..-|....+
T Consensus 721 LWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~ 799 (913)
T KOG0495|consen 721 LWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPR 799 (913)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccC
Confidence 88888888899999999999999732 2 567889999999999999999999998887765 45566777777766666
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHH
Q 008183 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEPD-AAVWRALLSFSAIHGKADMASKM 393 (575)
Q Consensus 316 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~ 393 (575)
.++-......+.+ .+-|..+.-++..++-...++++|.+.|.+. ...|| -.+|.-+..-+.++|.-+.-.++
T Consensus 800 ~~rkTks~DALkk------ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev 873 (913)
T KOG0495|consen 800 PQRKTKSIDALKK------CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEV 873 (913)
T ss_pred cccchHHHHHHHh------ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHH
Confidence 6664444444332 3567777788888899999999999999987 56665 78999999999999999999999
Q ss_pred HHHHHhcCCCCchhHHHHH
Q 008183 394 GKRLIDINPYDDSAYVIVA 412 (575)
Q Consensus 394 ~~~~~~~~p~~~~~~~~l~ 412 (575)
+.+....+|.....|....
T Consensus 874 ~~~c~~~EP~hG~~W~avS 892 (913)
T KOG0495|consen 874 LKKCETAEPTHGELWQAVS 892 (913)
T ss_pred HHHHhccCCCCCcHHHHHh
Confidence 9999999998776666543
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.7e-12 Score=87.19 Aligned_cols=50 Identities=28% Similarity=0.746 Sum_probs=47.1
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008183 266 LNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315 (575)
Q Consensus 266 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 315 (575)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.5e-12 Score=86.64 Aligned_cols=50 Identities=20% Similarity=0.493 Sum_probs=47.0
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHh
Q 008183 164 RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAE 213 (575)
Q Consensus 164 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 213 (575)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||++++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.4e-10 Score=104.34 Aligned_cols=198 Identities=14% Similarity=0.105 Sum_probs=158.3
Q ss_pred chhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008183 235 NVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312 (575)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 312 (575)
....+..+...|...|++++|.+.|++.+. +.+...+..+...|...|++++|.+.|++..+... .+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Confidence 356677788888889999999998887443 34566778888888899999999999988887643 355667777888
Q ss_pred HHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHH
Q 008183 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMA 390 (575)
Q Consensus 313 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a 390 (575)
+...|++++|...+...............+..+...+...|++++|...+++. ...| +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 88899999999999988533222223556777888899999999999999887 3344 467788888999999999999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhh
Q 008183 391 SKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 391 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 433 (575)
...+++..+..|.++..+..++..+...|+.++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999988887778888899999999999999998887764
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.3e-08 Score=95.77 Aligned_cols=320 Identities=14% Similarity=0.076 Sum_probs=163.8
Q ss_pred CcccHHHHHHHHhHcCCChHHHHHHHccCCCCChhhHHHHHHHHhcCchHHHHHHHHhhCCCCCcCCChhhHH--HHHHH
Q 008183 31 ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLA--SLFKT 108 (575)
Q Consensus 31 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~a~~~~~~m~~~~~~~~~p~~~t~~--~ll~~ 108 (575)
.|++.+-..--.+-+.|....|...|-.....-+.-|.+-+.-..-.. -++........ .+.|..-+. .+..+
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit-~~e~~~~l~~~----l~~~~h~M~~~F~~~a 236 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELIT-DIEILSILVVG----LPSDMHWMKKFFLKKA 236 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhc-hHHHHHHHHhc----CcccchHHHHHHHHHH
Confidence 454444444445556777888888887665433344443332211100 22222222221 111111111 12344
Q ss_pred HhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCCC------CcchHHHHHHHHHhCCCc
Q 008183 109 CASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRER------DVVCYGAMIVGFAQNSRL 182 (575)
Q Consensus 109 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~ 182 (575)
+-... ..+.+.+=.......|++.+...-+-...+.-...|+++|+.+|+++... |..+|+.++ |+++.+.
T Consensus 237 ~~el~-q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~s 313 (559)
T KOG1155|consen 237 YQELH-QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKS 313 (559)
T ss_pred HHHHH-HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhH
Confidence 44455 66666666677777777766666555555555667777777777777652 445666555 3333222
Q ss_pred hHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhh
Q 008183 183 VDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDEN 262 (575)
Q Consensus 183 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 262 (575)
. +.++.+-...=-+--+.|..++.+-|+-.++.++|...|+..++.+ +.....|+.+..-|....+-..|.+.++.+
T Consensus 314 k--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 314 K--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred H--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 1 1111111110011222345555555555566666666666666554 334555555556666666666666666554
Q ss_pred CC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChh
Q 008183 263 LS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLE 340 (575)
Q Consensus 263 ~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 340 (575)
+. +.|-..|-.|..+|.-.+.+.=|+-.|++.... -+-|...+.+|..+|.+.++.++|...|.... ..| ..+..
T Consensus 391 vdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai-~~~-dte~~ 467 (559)
T KOG1155|consen 391 VDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-KPNDSRLWVALGECYEKLNRLEEAIKCYKRAI-LLG-DTEGS 467 (559)
T ss_pred HhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHhccHHHHHHHHHHHH-hcc-ccchH
Confidence 33 455556666666666666666666666655553 12244555556666666666666666655542 211 12335
Q ss_pred HHHHHHHHHhccCChHHHHHHHHh
Q 008183 341 HYTCLISAMGRAGRLEDAERIAMA 364 (575)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~ 364 (575)
.+..|.++|-+.++.++|...|++
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek 491 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEK 491 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Confidence 555566666666666666555443
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.3e-11 Score=121.52 Aligned_cols=264 Identities=13% Similarity=0.129 Sum_probs=189.5
Q ss_pred HHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCC
Q 008183 187 SVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL 266 (575)
Q Consensus 187 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 266 (575)
.++-.+...|+.||.+||.+++.-|+..|+.+.|- +|..|.-...+.+..+++.++......++.+.+. .|
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--------ep 81 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--------EP 81 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC--------CC
Confidence 45667888999999999999999999999999998 9999988888889999999999988888877654 67
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHH
Q 008183 267 NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLI 346 (575)
Q Consensus 267 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 346 (575)
...+|.+|..+|.++|+... |+...+ -...+...++..|....-..++-.+.-..+.-||.. ..+
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~i 146 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAI 146 (1088)
T ss_pred chhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHH
Confidence 78899999999999999876 332222 222345555666666666666654432334445543 355
Q ss_pred HHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCCchhHHHHHHHHHhCCCchHHH
Q 008183 347 SAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDIN-PYDDSAYVIVANVLSGVGRWDEVA 425 (575)
Q Consensus 347 ~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a~ 425 (575)
......|.++.+.+++..+|...-..+...++.-+... ....+++........ ..++.+|..+...-..+|+.+.|.
T Consensus 147 lllv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak 224 (1088)
T KOG4318|consen 147 LLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAK 224 (1088)
T ss_pred HHHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHH
Confidence 55667888999999998886332111222234433332 233344444333322 357789999999999999999999
Q ss_pred HHHHHHhhCCCccCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCCccCCCccc
Q 008183 426 EVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEML 491 (575)
Q Consensus 426 ~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p~~~~~~ 491 (575)
.++.+|+++|+..++...|. ++.|....+ .++.+.+-|++.|+.|+..|.-
T Consensus 225 ~ll~emke~gfpir~HyFwp--------Ll~g~~~~q-------~~e~vlrgmqe~gv~p~seT~a 275 (1088)
T KOG4318|consen 225 NLLYEMKEKGFPIRAHYFWP--------LLLGINAAQ-------VFEFVLRGMQEKGVQPGSETQA 275 (1088)
T ss_pred HHHHHHHHcCCCcccccchh--------hhhcCccch-------HHHHHHHHHHHhcCCCCcchhH
Confidence 99999999999988888886 334422222 3445678899999999977643
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.2e-08 Score=93.95 Aligned_cols=253 Identities=13% Similarity=0.069 Sum_probs=177.6
Q ss_pred HHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHccCCH
Q 008183 175 GFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGL--DRNVIVGTGLIDGYGKAGIV 252 (575)
Q Consensus 175 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~ 252 (575)
+|-...+.++++.-.+.....|+.-+...-+-...+.-...++++|..+|+.+.+... --|..+|+.++-.--.+..+
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL 315 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL 315 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH
Confidence 3444445555555555555555444443333333344455666677777766666520 01344555444332222222
Q ss_pred H-HHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008183 253 S-DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV 331 (575)
Q Consensus 253 ~-~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 331 (575)
. -|..+++ +.+--..|.-.+.+-|+-.++.++|...|++..+.+.. ....++.+..-|....+...|.+-++...
T Consensus 316 s~LA~~v~~--idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAv- 391 (559)
T KOG1155|consen 316 SYLAQNVSN--IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAV- 391 (559)
T ss_pred HHHHHHHHH--hccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHH-
Confidence 1 1222222 22223344555566678888999999999999885432 34567777788899999999999998774
Q ss_pred hcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhH
Q 008183 332 RYKLEP-GLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAY 408 (575)
Q Consensus 332 ~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 408 (575)
.+.| |-..|-.|..+|.-.+.+.-|+-.|++. .++| |...|.+|...|.+.++.++|++.|.++...+..+..++
T Consensus 392 --di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l 469 (559)
T KOG1155|consen 392 --DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSAL 469 (559)
T ss_pred --hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHH
Confidence 4455 5788999999999999999999999988 5677 699999999999999999999999999999887788899
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHhh
Q 008183 409 VIVANVLSGVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 409 ~~l~~~~~~~g~~~~a~~~~~~m~~ 433 (575)
..|.+.|-+.++.++|...+++-.+
T Consensus 470 ~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 470 VRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999999887765
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.9e-09 Score=105.68 Aligned_cols=231 Identities=16% Similarity=0.134 Sum_probs=172.6
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHh-----C-CCCch-hHHHHHHHHHHccCCHHHHHHHHhhhCC-------CC-
Q 008183 202 YCVSGALRAAAELAAMEQCRVIHGHAVVS-----G-LDRNV-IVGTGLIDGYGKAGIVSDARRVFDENLS-------VL- 266 (575)
Q Consensus 202 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g-~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~- 266 (575)
.|+..+...|...|+++.|.+++++.++. | ..|.+ ...+.+...|...+++++|..+|++++. ..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 46666888899999999999988887664 2 12222 2334467788999999999999887554 11
Q ss_pred --ChhhHHHHHHHHHHcCChHHHHHHHHHHHH-----cCCC-CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC--C
Q 008183 267 --NSIAWNAMMAGYAQQGDQSTVLELFHLLEM-----RGFA-PDE-YSFLAVLTALCNAGLAGESEKWIERMKVRYK--L 335 (575)
Q Consensus 267 --~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~-p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~ 335 (575)
-..+++.|..+|.+.|++++|...++...+ .|.. |.. .-++.+...|+..+.+++|..++......+. +
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 235677788889999999998888876543 1222 232 2366677778889999999999886644332 2
Q ss_pred CCC----hhHHHHHHHHHhccCChHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHh--
Q 008183 336 EPG----LEHYTCLISAMGRAGRLEDAERIAMAM---------PFEPD-AAVWRALLSFSAIHGKADMASKMGKRLID-- 399 (575)
Q Consensus 336 ~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-- 399 (575)
.++ ..+++.|...|-..|++++|++++++. +..+. ...++.|..+|.+.++.++|.++|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 478999999999999999999999877 12232 56678899999999999999998887764
Q ss_pred --cCCCC---chhHHHHHHHHHhCCCchHHHHHHHHHh
Q 008183 400 --INPYD---DSAYVIVANVLSGVGRWDEVAEVRKVMK 432 (575)
Q Consensus 400 --~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 432 (575)
.+|.. ..+|..|+..|.+.|++++|.++.+...
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 44544 3478899999999999999999988775
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.5e-08 Score=100.54 Aligned_cols=343 Identities=12% Similarity=0.030 Sum_probs=231.4
Q ss_pred CCChHHHHHHHccCC---CCChhhHHHHHHHHhcCch---HHHHHHHHhhCCCCCcCCChhhHHHHHHHHhhchhhHHHH
Q 008183 46 SNLLSYSLRLFNHIP---SPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFG 119 (575)
Q Consensus 46 ~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~---a~~~~~~m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a 119 (575)
.|++++|.+++.++. +.+...|-+|-..|-+.|+ ++..+-..... .+-|..-|..+-.-....| .+..|
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL----~p~d~e~W~~ladls~~~~-~i~qA 226 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL----NPKDYELWKRLADLSEQLG-NINQA 226 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc----CCCChHHHHHHHHHHHhcc-cHHHH
Confidence 499999999998875 4567789999999999998 44443333322 2335567777777777788 89999
Q ss_pred HHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCCCCc-c-------hHHHHHHHHHhCCCchHHHHHHHH
Q 008183 120 LSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDV-V-------CYGAMIVGFAQNSRLVDSLSVFAD 191 (575)
Q Consensus 120 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~-~-------~~~~li~~~~~~g~~~~A~~~~~~ 191 (575)
.-.+..+++... ++....---..+|-+.|+...|...|.++-+.+. + .--.++..|...++-+.|++.+..
T Consensus 227 ~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 227 RYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999998873 3444444456788899999999998888765322 1 112245667777777888888888
Q ss_pred hHHC-CCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHh---------------------------CCCCchhH-HHHH
Q 008183 192 MRSS-DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVS---------------------------GLDRNVIV-GTGL 242 (575)
Q Consensus 192 m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---------------------------g~~~~~~~-~~~l 242 (575)
.... +-..+..+++.++..+.+....+.+.......... ++.++..+ ...+
T Consensus 306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~i 385 (895)
T KOG2076|consen 306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMI 385 (895)
T ss_pred HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhh
Confidence 7652 22334456667777777777777776666555541 22333333 2222
Q ss_pred HHHHHccCCHHHHHHHHhhhCC----CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 008183 243 IDGYGKAGIVSDARRVFDENLS----VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL 318 (575)
Q Consensus 243 i~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 318 (575)
--.-.+.+...+++.-|-. .. .-++..|.-+..+|.+.|++.+|+.+|..+.....--+...|..+..+|...|.
T Consensus 386 cL~~L~~~e~~e~ll~~l~-~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLV-EDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhcccccchHHHHHHHHH-HhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence 2222344455555544432 11 234556777888999999999999999999877555567788888888899999
Q ss_pred HHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhCC-----------CCCCHHHHHHHHHHHHHcCC
Q 008183 319 AGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAMP-----------FEPDAAVWRALLSFSAIHGK 386 (575)
Q Consensus 319 ~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-----------~~p~~~~~~~ll~~~~~~g~ 386 (575)
.++|.+.|+... ...|+ ...--.|...|-+.|+.++|.+.++.+- ..|+...--.....+.+.|+
T Consensus 465 ~e~A~e~y~kvl---~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk 541 (895)
T KOG2076|consen 465 YEEAIEFYEKVL---ILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGK 541 (895)
T ss_pred HHHHHHHHHHHH---hcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhh
Confidence 999999998774 34565 4555677788889999999999998862 22333333444455667777
Q ss_pred hHHHHHHHHHHH
Q 008183 387 ADMASKMGKRLI 398 (575)
Q Consensus 387 ~~~a~~~~~~~~ 398 (575)
.++-......++
T Consensus 542 ~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 542 REEFINTASTLV 553 (895)
T ss_pred HHHHHHHHHHHH
Confidence 766555444443
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.4e-07 Score=89.14 Aligned_cols=366 Identities=11% Similarity=0.011 Sum_probs=241.2
Q ss_pred HHHHHHHhHcCCChHHHHHHHccCCCCC-hhhHHHHHHHHhcCch------------------HHHHHHHHhhCC-----
Q 008183 36 YNNLITNYSKSNLLSYSLRLFNHIPSPN-IVSWTALISAHSNSPL------------------SLNIFLSMLRHP----- 91 (575)
Q Consensus 36 ~~~li~~~~~~g~~~~A~~~f~~m~~~~-~~~~~~li~~~~~~g~------------------a~~~~~~m~~~~----- 91 (575)
--..+..|-..++-+.|.....+.|+.- ..--|.|+.-+-+.|. |+..+.-..+.+
T Consensus 100 ~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e 179 (564)
T KOG1174|consen 100 RRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNE 179 (564)
T ss_pred HHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchh
Confidence 3345666666788888888888887432 2223333333322221 222222222211
Q ss_pred -------CCCcCCChhhHHHHHHHHhhch-hhHHHHHHHHHHHH-hhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcC
Q 008183 92 -------TLSFLPNQRTLASLFKTCASLS-HAFLFGLSLHSLSL-KLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIR 162 (575)
Q Consensus 92 -------~~~~~p~~~t~~~ll~~~~~~~-~~~~~a~~~~~~~~-~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 162 (575)
...+.|+..+...-+++++..- .+-..+-+.+-.+. ..-++.|+.....+.+.|...|+.++|...|++..
T Consensus 180 ~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~ 259 (564)
T KOG1174|consen 180 INSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTL 259 (564)
T ss_pred hhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHh
Confidence 0013343344444444433321 02222233333332 23467788899999999999999999999999876
Q ss_pred CCCcchHHHH---HHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHH
Q 008183 163 ERDVVCYGAM---IVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVG 239 (575)
Q Consensus 163 ~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 239 (575)
.-|..+...| .-.+.+.|+++....+...+.... +-...-|..-+......++++.|..+-+..++.. +.+...+
T Consensus 260 ~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~al 337 (564)
T KOG1174|consen 260 CANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEAL 337 (564)
T ss_pred hCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHH
Confidence 5443332221 223457888888888877775431 1222333333444455677788877777776653 3344444
Q ss_pred HHHHHHHHccCCHHHHHHHHhhh--CCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHh-
Q 008183 240 TGLIDGYGKAGIVSDARRVFDEN--LSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL-TALCN- 315 (575)
Q Consensus 240 ~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~~- 315 (575)
-.-..++...|+.++|.-.|+.+ +.+-+..+|.-|+.+|...|+..+|.-+-+...+. +..+..+...+- ..|..
T Consensus 338 ilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~d 416 (564)
T KOG1174|consen 338 ILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPD 416 (564)
T ss_pred HhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccC
Confidence 44457788889999999999873 33678999999999999999999999887766554 344555655442 33332
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 008183 316 AGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM-PFEPDAAVWRALLSFSAIHGKADMASKM 393 (575)
Q Consensus 316 ~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 393 (575)
..--++|..+++.- ..+.|+ ....+.+...+...|+.+++..++++. ...||....+.|...+...+.+++|...
T Consensus 417 p~~rEKAKkf~ek~---L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~ 493 (564)
T KOG1174|consen 417 PRMREKAKKFAEKS---LKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEY 493 (564)
T ss_pred chhHHHHHHHHHhh---hccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHH
Confidence 33457888888854 466788 677888899999999999999999887 6789999999999999999999999999
Q ss_pred HHHHHhcCCCCchh
Q 008183 394 GKRLIDINPYDDSA 407 (575)
Q Consensus 394 ~~~~~~~~p~~~~~ 407 (575)
|..++.++|.+..+
T Consensus 494 y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 494 YYKALRQDPKSKRT 507 (564)
T ss_pred HHHHHhcCccchHH
Confidence 99999999988543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.8e-08 Score=96.96 Aligned_cols=214 Identities=15% Similarity=0.114 Sum_probs=168.5
Q ss_pred cccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHH
Q 008183 214 LAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELF 291 (575)
Q Consensus 214 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~ 291 (575)
.|+.-.+.+-++..++.. +.+...|--+..+|....+-++..+.|+.+.. +.|..+|..-...+.-.+++++|..=|
T Consensus 339 ~g~~~~a~~d~~~~I~l~-~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLD-PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcC-cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 467777788888888764 33333477777889999999999999987433 556777877777778888999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC
Q 008183 292 HLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEPD 370 (575)
Q Consensus 292 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 370 (575)
++.++... -+...|..+--+..+.+.++++...|++.+.++ +.-.+.|+.....+...+++++|.+.|+.. .++|+
T Consensus 418 ~Kai~L~p-e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF--P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 418 QKAISLDP-ENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF--PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHhhcCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 99887532 256677777777788999999999999997653 334789999999999999999999999876 34443
Q ss_pred ---------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHh
Q 008183 371 ---------AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432 (575)
Q Consensus 371 ---------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 432 (575)
+..-..++-.-. .+++..|..+++++++++|....+|..|..+-...|+.++|.++|++-.
T Consensus 495 ~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 495 EHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred cccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 222222332222 3899999999999999999999999999999999999999999998654
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.8e-08 Score=91.20 Aligned_cols=274 Identities=16% Similarity=0.126 Sum_probs=127.9
Q ss_pred CCChHHHHHHHHhcCC---CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHH
Q 008183 148 FRSPDNAKKVFDEIRE---RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIH 224 (575)
Q Consensus 148 ~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 224 (575)
.|++..|+++..+-.+ .....|-.-+.+--+.|+.+.+-+++.+.-+..-.++.....+........|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 4555555555544332 1222333333344445555555555555544322333334444444445555555555555
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCCC-----------hhhHHHHHHHHHHcCChHHHHHHHHH
Q 008183 225 GHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN-----------SIAWNAMMAGYAQQGDQSTVLELFHL 293 (575)
Q Consensus 225 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~~~li~~~~~~g~~~~A~~l~~~ 293 (575)
.++.+.+ +.++.+.......|.+.|++.....+... +.+.. ..+|+.++.-....+..+.-...|+.
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~-L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPK-LRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHH-HHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 5555443 34445555555555555555555555554 33111 12444444444444444433334444
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC----CCCC
Q 008183 294 LEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM----PFEP 369 (575)
Q Consensus 294 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p 369 (575)
...+ .+-+...-.+++.-+.+.|+.++|.++..+. -+.+..|+.. .+ -...+-++.+.-.+..+.- |..
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~-Lk~~~D~~L~---~~-~~~l~~~d~~~l~k~~e~~l~~h~~~- 327 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDA-LKRQWDPRLC---RL-IPRLRPGDPEPLIKAAEKWLKQHPED- 327 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHH-HHhccChhHH---HH-HhhcCCCCchHHHHHHHHHHHhCCCC-
Confidence 4322 2333333344445555556666666655555 2334444311 11 1222333333322222222 222
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHh
Q 008183 370 DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432 (575)
Q Consensus 370 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 432 (575)
+..+.+|...|.+++.+.+|...++..++..| +...|..+..++.+.|+.++|.+++++-.
T Consensus 328 -p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 328 -PLLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred -hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 34555555666666666666666665555555 33455666666666666666666655544
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.1e-09 Score=110.13 Aligned_cols=256 Identities=14% Similarity=0.082 Sum_probs=170.2
Q ss_pred HHHHHHhhCCCCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhc
Q 008183 82 NIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEI 161 (575)
Q Consensus 82 ~~~~~m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m 161 (575)
.++..|...| +.||..||.+++..|+..| +.+.|- ++..|.-..++.+..+++.++....+.++.+.+.
T Consensus 11 nfla~~e~~g---i~PnRvtyqsLiarYc~~g-dieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk------ 79 (1088)
T KOG4318|consen 11 NFLALHEISG---ILPNRVTYQSLIARYCTKG-DIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK------ 79 (1088)
T ss_pred hHHHHHHHhc---CCCchhhHHHHHHHHcccC-CCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC------
Confidence 5667788888 9999999999999999999 999888 9999988888888899999999999999888776
Q ss_pred CCCCcchHHHHHHHHHhCCCchHHHHHHHH-hH-------HCCCCcCHHHHHHHHHHHHhc-------ccHHHHHHHHHH
Q 008183 162 RERDVVCYGAMIVGFAQNSRLVDSLSVFAD-MR-------SSDVGSTMYCVSGALRAAAEL-------AAMEQCRVIHGH 226 (575)
Q Consensus 162 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-m~-------~~g~~p~~~t~~~ll~~~~~~-------~~~~~a~~~~~~ 226 (575)
+|...+|+.|..+|.+.||... ++..++ |. ..|+.....-|-..+++|-.. -....-+.+++.
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaq 157 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQ 157 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHH
Confidence 7788899999999999998765 332222 21 123222222222222222110 001111122222
Q ss_pred HHHhCC-CCchhHHHH---HHHHHHc-cCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 008183 227 AVVSGL-DRNVIVGTG---LIDGYGK-AGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAP 301 (575)
Q Consensus 227 ~~~~g~-~~~~~~~~~---li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 301 (575)
.++.+. .|...-++. ++.-... ...+++-...-+...+.++..+|.+.+..-.-+|+.+.|..++.+|.+.|++.
T Consensus 158 llkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpi 237 (1088)
T KOG4318|consen 158 LLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPI 237 (1088)
T ss_pred HHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCc
Confidence 333221 111110110 1111111 12233333333442225888899999999999999999999999999999998
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCC
Q 008183 302 DEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGR 354 (575)
Q Consensus 302 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 354 (575)
+..-|-.|+-+ .++..-+..++..| ...|+.|+..|+.-.+-.+...|.
T Consensus 238 r~HyFwpLl~g---~~~~q~~e~vlrgm-qe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 238 RAHYFWPLLLG---INAAQVFEFVLRGM-QEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred ccccchhhhhc---CccchHHHHHHHHH-HHhcCCCCcchhHHHHHhhhcchh
Confidence 88888888855 78888888888877 667999999888877766666444
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.7e-08 Score=93.79 Aligned_cols=278 Identities=13% Similarity=0.018 Sum_probs=223.7
Q ss_pred chhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCCC----CcchHHHHHHHHHhCCCchHHHH
Q 008183 112 LSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRER----DVVCYGAMIVGFAQNSRLVDSLS 187 (575)
Q Consensus 112 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~----~~~~~~~li~~~~~~g~~~~A~~ 187 (575)
.| ++..|+++.....+.+-.| ...|..-..+--+.|+.+.|-+++.+..++ +...+-+........|+++.|..
T Consensus 97 eG-~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EG-DFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cC-cHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 35 8999999998877776433 344555557777889999999999988764 44567777888899999999999
Q ss_pred HHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCch-------hHHHHHHHHHHccCCHHHHHHHHh
Q 008183 188 VFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNV-------IVGTGLIDGYGKAGIVSDARRVFD 260 (575)
Q Consensus 188 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~ 260 (575)
-..++.+.+ +-+.........+|.+.|++.....+...+.+.|.-.+. .+++.+++-....+..+.-...++
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 999998764 335567788899999999999999999999999876654 466777776666666676667777
Q ss_pred hhCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC
Q 008183 261 ENLS---VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEP 337 (575)
Q Consensus 261 ~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 337 (575)
. .+ +.+...--+++.-+.+.|+.++|.++.++-.+.+..|+..+ +-.+.+.++.+.-.+..++-...++-.|
T Consensus 254 ~-~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~----~~~~l~~~d~~~l~k~~e~~l~~h~~~p 328 (400)
T COG3071 254 N-QPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR----LIPRLRPGDPEPLIKAAEKWLKQHPEDP 328 (400)
T ss_pred h-ccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH----HHhhcCCCCchHHHHHHHHHHHhCCCCh
Confidence 7 66 34566677788889999999999999999999888877222 2345677888777777777766665555
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008183 338 GLEHYTCLISAMGRAGRLEDAERIAMAM-PFEPDAAVWRALLSFSAIHGKADMASKMGKRLID 399 (575)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 399 (575)
..+.+|...|.+.+.+.+|...|+.. +..|+..+|+-+..++.+.|+..+|.+..++..-
T Consensus 329 --~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 329 --LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred --hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 67888999999999999999999976 7889999999999999999999999999998874
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.2e-08 Score=107.71 Aligned_cols=259 Identities=8% Similarity=-0.072 Sum_probs=184.2
Q ss_pred CcchHHHHHHHHHh-----CCCchHHHHHHHHhHHCCCCcCH-HHHHHHHHHHH---------hcccHHHHHHHHHHHHH
Q 008183 165 DVVCYGAMIVGFAQ-----NSRLVDSLSVFADMRSSDVGSTM-YCVSGALRAAA---------ELAAMEQCRVIHGHAVV 229 (575)
Q Consensus 165 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~---------~~~~~~~a~~~~~~~~~ 229 (575)
+...|...+.+-.. .++.++|+++|++..+. .|+. ..+..+..++. ..+++++|...++.+++
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 45566666666322 13467899999998764 5654 34444444433 22457899999999988
Q ss_pred hCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 008183 230 SGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFL 307 (575)
Q Consensus 230 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 307 (575)
.. +.+...+..+..++...|++++|...|++++. +.+...|..+...+...|++++|+..+++..+....+ ...+.
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~-~~~~~ 410 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTR-AAAGI 410 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-hhhHH
Confidence 75 55778888888999999999999999998655 4456788889999999999999999999998864332 22333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHc
Q 008183 308 AVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM-PFEPD-AAVWRALLSFSAIH 384 (575)
Q Consensus 308 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~ 384 (575)
.++..+...|++++|...+++..... .|+ ...+..+...|...|++++|...++++ +..|+ ...++.+...+...
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~~--~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQH--LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhc--cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhcc
Confidence 34445667899999999998874331 354 455777888899999999999999887 44555 44455566666777
Q ss_pred CChHHHHHHHHHHHhcC---CCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCC
Q 008183 385 GKADMASKMGKRLIDIN---PYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435 (575)
Q Consensus 385 g~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 435 (575)
| +.|...++++.+.. +.++.. +...|.-.|+-+.+..+ +++.+.|
T Consensus 489 g--~~a~~~l~~ll~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 489 S--ERALPTIREFLESEQRIDNNPGL---LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred H--HHHHHHHHHHHHHhhHhhcCchH---HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 7 47777777776533 434332 55667777777777666 7777654
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.9e-07 Score=85.57 Aligned_cols=130 Identities=12% Similarity=0.106 Sum_probs=58.6
Q ss_pred ccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008183 248 KAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKW 325 (575)
Q Consensus 248 ~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 325 (575)
...+++.|..++.+++. +..+..--.+...+...|++++|.+.++...+.+..--..+...|..+|.+.|+.+++..+
T Consensus 192 ~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~f 271 (389)
T COG2956 192 ASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNF 271 (389)
T ss_pred hhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 33444555555544333 2222222233344555555555555555555544333334455555666666666666666
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHH-HHhCCCCCCHHHHHHHHHH
Q 008183 326 IERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERI-AMAMPFEPDAAVWRALLSF 380 (575)
Q Consensus 326 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~p~~~~~~~ll~~ 380 (575)
+..+... .++...-..+.+......-.+.|... .+.+.-+|+...+..|+..
T Consensus 272 L~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~ 324 (389)
T COG2956 272 LRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDY 324 (389)
T ss_pred HHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHh
Confidence 6555221 23333333333333222233333322 2333345555555555543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.4e-08 Score=92.11 Aligned_cols=159 Identities=11% Similarity=0.044 Sum_probs=65.3
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 008183 168 CYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYG 247 (575)
Q Consensus 168 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 247 (575)
.+..+...|...|++++|.+.|++..+.. +.+...+..+...+...|++++|.+.+....+.. +.+...+..+...|.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 34444455555555555555555544321 1122333344444444444444444444444432 223334444444444
Q ss_pred ccCCHHHHHHHHhhhCCCC----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008183 248 KAGIVSDARRVFDENLSVL----NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESE 323 (575)
Q Consensus 248 ~~g~~~~A~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 323 (575)
..|++++|.+.|++++..+ ....+..+...+...|++++|...|.+..+.. +.+...+..+...+...|++++|.
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHH
Confidence 4455555555444422211 11223333334444444444444444443321 112223333333444444444444
Q ss_pred HHHHHH
Q 008183 324 KWIERM 329 (575)
Q Consensus 324 ~~~~~m 329 (575)
.++++.
T Consensus 190 ~~~~~~ 195 (234)
T TIGR02521 190 AYLERY 195 (234)
T ss_pred HHHHHH
Confidence 444433
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=9.4e-08 Score=87.58 Aligned_cols=302 Identities=13% Similarity=0.065 Sum_probs=203.0
Q ss_pred CCChHHHHHHHHhcCCCCcchH---HHHHHHHHhCCCchHHHHHHHHhHHCCCCcCH---HHHHHHHHHHHhcccHHHHH
Q 008183 148 FRSPDNAKKVFDEIRERDVVCY---GAMIVGFAQNSRLVDSLSVFADMRSSDVGSTM---YCVSGALRAAAELAAMEQCR 221 (575)
Q Consensus 148 ~g~~~~A~~~f~~m~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~~~~~~~~~~~a~ 221 (575)
..+.++|.++|-+|.+-|..++ -+|-+-|-+.|..+.|+++-+.+.++.--+.. ...-.+..-|-..|-++.|+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 4678888898888887665554 35677788889999999988887664211111 12334555667788889999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhH--------HHHHHHHHHcCChHHHHHHHHH
Q 008183 222 VIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW--------NAMMAGYAQQGDQSTVLELFHL 293 (575)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--------~~li~~~~~~g~~~~A~~l~~~ 293 (575)
.+|..+.+.| ..-.....-|+..|-+..+|++|.++-++ +.+.+...| --+...+....+.+.|..++.+
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~-L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAER-LVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 9998888754 33455667788899999999999888876 443333333 3344455567788999999988
Q ss_pred HHHcCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCH
Q 008183 294 LEMRGFAPDEYSFL-AVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEPDA 371 (575)
Q Consensus 294 m~~~g~~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~ 371 (575)
..+.. |+.+--+ .+-......|+++.|.+.++... +.+..--..+...|..+|...|+.++...++.++ ...+..
T Consensus 206 Alqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~-eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 206 ALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVL-EQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred HHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHH-HhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 87753 3333322 34456778899999999999874 3332222577788899999999999999988876 344444
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH---hCCCchHHHHHHHHHhhCCCccCCceeEEEEC
Q 008183 372 AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLS---GVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVK 448 (575)
Q Consensus 372 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~---~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~ 448 (575)
..-..+..--....-.+.|...+.+-+...|. ...+..|++.-. ..|++.+...+++.|....++..|......-+
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt-~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CG 361 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRRKPT-MRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCG 361 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCc-HHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCceecccC
Confidence 44444544444555577788887777777774 445555665543 34567788888888887766666554433222
Q ss_pred CEEEEEE
Q 008183 449 GKVHVFL 455 (575)
Q Consensus 449 ~~~~~~~ 455 (575)
=..|.+.
T Consensus 362 F~a~~l~ 368 (389)
T COG2956 362 FTAHTLY 368 (389)
T ss_pred Ccceeee
Confidence 2334443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.2e-08 Score=101.10 Aligned_cols=193 Identities=14% Similarity=0.125 Sum_probs=135.8
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHh-----C--CCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC---------CCChh-
Q 008183 207 ALRAAAELAAMEQCRVIHGHAVVS-----G--LDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS---------VLNSI- 269 (575)
Q Consensus 207 ll~~~~~~~~~~~a~~~~~~~~~~-----g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~- 269 (575)
+...|...+.+++|..+|..++.. | .+.-..+++.|..+|.+.|++++|...++.++. .+.+.
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~ 326 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA 326 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 444555566666666666655432 2 111234556666778888888888877776544 12232
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc----C-CCC
Q 008183 270 AWNAMMAGYAQQGDQSTVLELFHLLEMR---GFAPD----EYSFLAVLTALCNAGLAGESEKWIERMKVRY----K-LEP 337 (575)
Q Consensus 270 ~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~----~-~~p 337 (575)
..+.++..+...+++++|..+++...+. -+.++ ..+++.|...|...|++++|.++|++..... + ..+
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~ 406 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDY 406 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcCh
Confidence 3556677788889999999888765432 12233 3578889999999999999999998886543 1 122
Q ss_pred C-hhHHHHHHHHHhccCChHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008183 338 G-LEHYTCLISAMGRAGRLEDAERIAMAM--------PFEPD-AAVWRALLSFSAIHGKADMASKMGKRLID 399 (575)
Q Consensus 338 ~-~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 399 (575)
. ...++.|...|.+.++.++|.++|.+. +-.|+ ..+|..|...|...|+++.|.++.+.+..
T Consensus 407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 2 467788888999999999998888766 24555 67899999999999999999999988773
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.3e-08 Score=93.10 Aligned_cols=230 Identities=13% Similarity=0.032 Sum_probs=175.0
Q ss_pred HHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcc
Q 008183 170 GAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKA 249 (575)
Q Consensus 170 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 249 (575)
+-|-.+|.+.|.+.+|.+.|+.-.+. .|-..||..+-++|.+..+++.|..++.+-++. ++.|+....-+...+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 56888999999999999999988775 677778888999999999999999999888775 466666666777888888
Q ss_pred CCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008183 250 GIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIE 327 (575)
Q Consensus 250 g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 327 (575)
++.++|.++++..++ +.++.+..++..+|.-.++++-|+..|+++.+.|+. +...|+.+.-+|.-.+.+|-+..-|.
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 899999999987444 456666777778888889999999999999988876 66777777777777777777776666
Q ss_pred HHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchh
Q 008183 328 RMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSA 407 (575)
Q Consensus 328 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 407 (575)
.... -.-+.++|- ..|-.|-......||+..|.+.|+-.+..+|++..+
T Consensus 383 RAls-------------------tat~~~~aa------------DvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ea 431 (478)
T KOG1129|consen 383 RALS-------------------TATQPGQAA------------DVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEA 431 (478)
T ss_pred HHHh-------------------hccCcchhh------------hhhhccceeEEeccchHHHHHHHHHHhccCcchHHH
Confidence 5421 122222232 234444444455678888888888888888888888
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 408 YVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 408 ~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
++.|.-.-.+.|++++|..++......
T Consensus 432 lnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 432 LNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 888888888888888888888776654
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.3e-08 Score=104.35 Aligned_cols=228 Identities=14% Similarity=0.043 Sum_probs=170.4
Q ss_pred CHHHHHHHHHHHHh-----cccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH---------ccCCHHHHHHHHhhhCC-
Q 008183 200 TMYCVSGALRAAAE-----LAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYG---------KAGIVSDARRVFDENLS- 264 (575)
Q Consensus 200 ~~~t~~~ll~~~~~-----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~~~~- 264 (575)
+...|...+.+-.. .+++++|...+++.++.. +.+...+..+..+|. ..+++++|...+++++.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 44555566655322 245788999999998763 334555666655544 23458899999998665
Q ss_pred -CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCh-hHH
Q 008183 265 -VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGL-EHY 342 (575)
Q Consensus 265 -~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~ 342 (575)
+.+...|..+...+...|++++|+..|++..+.+ +.+...+..+..++...|++++|...+++.. .+.|+. ..+
T Consensus 334 dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al---~l~P~~~~~~ 409 (553)
T PRK12370 334 DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECL---KLDPTRAAAG 409 (553)
T ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCCChhhH
Confidence 5577888888889999999999999999998864 2245677778888999999999999999884 345653 233
Q ss_pred HHHHHHHhccCChHHHHHHHHhCC--CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCC
Q 008183 343 TCLISAMGRAGRLEDAERIAMAMP--FEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVG 419 (575)
Q Consensus 343 ~~li~~~~~~g~~~~A~~~~~~m~--~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 419 (575)
..+...+...|++++|...+++.- ..|+ +..+..+..++...|+.++|...+.++....|.+......+...|...|
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH
Confidence 344445667899999999998872 2354 5567778888889999999999999988887877777788888888888
Q ss_pred CchHHHHHHHHHhhC
Q 008183 420 RWDEVAEVRKVMKDR 434 (575)
Q Consensus 420 ~~~~a~~~~~~m~~~ 434 (575)
+.|...++.+.+.
T Consensus 490 --~~a~~~l~~ll~~ 502 (553)
T PRK12370 490 --ERALPTIREFLES 502 (553)
T ss_pred --HHHHHHHHHHHHH
Confidence 4888877777653
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.5e-07 Score=88.28 Aligned_cols=345 Identities=11% Similarity=0.076 Sum_probs=194.8
Q ss_pred HHHHHHHHhhCCCCCcCCChhhHHHHH-HHHhhchhhHHHHHHHHHHHHhhCCCCchh----HHHHHHHHHHhCCChHHH
Q 008183 80 SLNIFLSMLRHPTLSFLPNQRTLASLF-KTCASLSHAFLFGLSLHSLSLKLSLHDKPF----CGSALVHFYSRFRSPDNA 154 (575)
Q Consensus 80 a~~~~~~m~~~~~~~~~p~~~t~~~ll-~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~----~~~~li~~~~~~g~~~~A 154 (575)
|+..|+-+.+.. ..||.-.+..-+ ..+.+.+ .+..|.++++..+..-...+.. +.+.+--.+.+.|++++|
T Consensus 220 alntyeiivknk---mf~nag~lkmnigni~~kkr-~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~da 295 (840)
T KOG2003|consen 220 ALNTYEIIVKNK---MFPNAGILKMNIGNIHFKKR-EFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDA 295 (840)
T ss_pred Hhhhhhhhhccc---ccCCCceeeeeecceeeehh-hHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhh
Confidence 888888888776 777765433222 3345556 8889999998888765443333 334444557789999999
Q ss_pred HHHHHhcCC--CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCC------------cCHHHHHHHHH-----------
Q 008183 155 KKVFDEIRE--RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG------------STMYCVSGALR----------- 209 (575)
Q Consensus 155 ~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~------------p~~~t~~~ll~----------- 209 (575)
...|+...+ ||..+--.|+-++..-|+-++..+.|.+|..-... |+....+..+.
T Consensus 296 insfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ 375 (840)
T KOG2003|consen 296 INSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKEN 375 (840)
T ss_pred HhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhh
Confidence 999998654 66665444555556678899999999998653322 22222222111
Q ss_pred ----------------------------------------------------HHHhcccHHHHHHHHHHHHHhCCCCchh
Q 008183 210 ----------------------------------------------------AAAELAAMEQCRVIHGHAVVSGLDRNVI 237 (575)
Q Consensus 210 ----------------------------------------------------~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 237 (575)
.+.+.|+++.|.+++.-..+..-..-..
T Consensus 376 ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~sa 455 (840)
T KOG2003|consen 376 KADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASA 455 (840)
T ss_pred hhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHH
Confidence 1112233333333333332221110000
Q ss_pred HHHHHHHH------------------------------------HHccCCHHHHHHHHhhhCCCCChhhHHHH---HHHH
Q 008183 238 VGTGLIDG------------------------------------YGKAGIVSDARRVFDENLSVLNSIAWNAM---MAGY 278 (575)
Q Consensus 238 ~~~~li~~------------------------------------~~~~g~~~~A~~~~~~~~~~~~~~~~~~l---i~~~ 278 (575)
..|.|-.. -...|++++|.+.+++++. .|...-.+| .-.+
T Consensus 456 aa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~-ndasc~ealfniglt~ 534 (840)
T KOG2003|consen 456 AANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALN-NDASCTEALFNIGLTA 534 (840)
T ss_pred HhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHc-CchHHHHHHHHhcccH
Confidence 00000000 0012333333333333111 111111111 1123
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHH
Q 008183 279 AQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEP-GLEHYTCLISAMGRAGRLED 357 (575)
Q Consensus 279 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~ 357 (575)
-..|+.++|++.|-++... +..+...+..+.+.|....+..+|.+++.+. ..+.| |.....-|.+.|-+.|+-..
T Consensus 535 e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~---~slip~dp~ilskl~dlydqegdksq 610 (840)
T KOG2003|consen 535 EALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA---NSLIPNDPAILSKLADLYDQEGDKSQ 610 (840)
T ss_pred HHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh---cccCCCCHHHHHHHHHHhhcccchhh
Confidence 3445555555555444322 2224445555555555556666666665433 23444 46777888888888888888
Q ss_pred HHHHHHhC-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHH-HHHHhCCCchHHHHHHHHHhhC
Q 008183 358 AERIAMAM-PF-EPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVA-NVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 358 A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~-~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
|++..-+- .. .-+..+..-|..-|....-++.+...|+++.-+.| +..-|..++ .++.+.|++..|..+++....+
T Consensus 611 afq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp-~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 611 AFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQP-NQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred hhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 88765443 32 33566666677777777778888999888877777 445566555 5667889999999999988654
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.2e-07 Score=90.27 Aligned_cols=262 Identities=13% Similarity=0.062 Sum_probs=201.8
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 008183 165 DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLID 244 (575)
Q Consensus 165 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 244 (575)
+....-.-..-+...+++.+.+++++...+. .+++...+..-|.++...|+..+-..+=..+++. .|....+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 4455555566677788888888888888764 3455555666666777777766666665566654 4667888999988
Q ss_pred HHHccCCHHHHHHHHhhh--CCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008183 245 GYGKAGIVSDARRVFDEN--LSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGES 322 (575)
Q Consensus 245 ~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 322 (575)
-|.-.|+.++|++.|.+. |.+.=...|-.....|+-.|..++|+..+....+. ++-...-+.-+.--|.+.++.+.|
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHH
Confidence 888889999999999872 33445578999999999999999999988777654 111222233344557889999999
Q ss_pred HHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHHcCChHHHHH
Q 008183 323 EKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAMP--------FEP-DAAVWRALLSFSAIHGKADMASK 392 (575)
Q Consensus 323 ~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~p-~~~~~~~ll~~~~~~g~~~~a~~ 392 (575)
.++|.+. .++.|+ +...+-+.-..-..+.+.+|..+|+..- -.+ -..+++.|..+|++.+.+++|+.
T Consensus 400 e~Ff~~A---~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 400 EKFFKQA---LAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHH---HhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 9999865 366675 6667777766777889999999987761 112 35578889999999999999999
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHh
Q 008183 393 MGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432 (575)
Q Consensus 393 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 432 (575)
.+++.+.+.|.+..+|.++.-.|...|+++.|...|.+-.
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998765
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.5e-06 Score=88.70 Aligned_cols=391 Identities=16% Similarity=0.169 Sum_probs=250.4
Q ss_pred CcccHHHHHHHHhHcCCChHHHHHHHccCCC---CChhhHHHHHHHHhcCch---HHHHHHHHhhCCCCCcCC-ChhhHH
Q 008183 31 ADRSIYNNLITNYSKSNLLSYSLRLFNHIPS---PNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLP-NQRTLA 103 (575)
Q Consensus 31 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~---a~~~~~~m~~~~~~~~~p-~~~t~~ 103 (575)
.++.+|..|.-+...+|+++.+-+.|++... .....|+.+-..|+-.|. |+.+++.-.... ..| |...+-
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~---~~ps~~s~~L 397 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKS---EQPSDISVLL 397 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccc---cCCCcchHHH
Confidence 7999999999999999999999999997652 345578888888887777 888888766543 224 444454
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHhh--CC--CCchhHHHHHHHHHHhC-----------CChHHHHHHHHhcCC-----
Q 008183 104 SLFKTCASLSHAFLFGLSLHSLSLKL--SL--HDKPFCGSALVHFYSRF-----------RSPDNAKKVFDEIRE----- 163 (575)
Q Consensus 104 ~ll~~~~~~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~~~~~-----------g~~~~A~~~f~~m~~----- 163 (575)
..-+.|.+.-+..+++...-..++.. +. ...+..|-.+--+|+.. ....++.+.+++..+
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45556665443666666655555552 11 12233444444444332 122456666666643
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 008183 164 RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLI 243 (575)
Q Consensus 164 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 243 (575)
|++.-| +.--|+-.++.+.|++..++..+.+-.-+...|..+.-.++..+++..|..+.+..... ++.|-.....-+
T Consensus 478 p~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E-~~~N~~l~~~~~ 554 (799)
T KOG4162|consen 478 PLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE-FGDNHVLMDGKI 554 (799)
T ss_pred chHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-hhhhhhhchhhh
Confidence 233333 33346677889999999999988877788888888888888899999999888876543 111111111112
Q ss_pred HHHHccCCHHHHHHHHhhh-------------------------CC-----CCChh-hHHHHHHHHHHcCChHHHHHHHH
Q 008183 244 DGYGKAGIVSDARRVFDEN-------------------------LS-----VLNSI-AWNAMMAGYAQQGDQSTVLELFH 292 (575)
Q Consensus 244 ~~~~~~g~~~~A~~~~~~~-------------------------~~-----~~~~~-~~~~li~~~~~~g~~~~A~~l~~ 292 (575)
..-...++.++|......+ +. ..|.. ++.-+ .+.+. -+...+..-.
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~l-s~l~a-~~~~~~~se~- 631 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYL-SSLVA-SQLKSAGSEL- 631 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHH-HHHHH-hhhhhccccc-
Confidence 2222244444443332221 10 01111 11111 11111 0000000000
Q ss_pred HHHHcCCC--CCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHH
Q 008183 293 LLEMRGFA--PDE------YSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAM 363 (575)
Q Consensus 293 ~m~~~g~~--p~~------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~ 363 (575)
.|...-+. |+. ..+......+...+..++|...+.+.. ++.|- ...|......+...|..++|.+.|.
T Consensus 632 ~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~ 708 (799)
T KOG4162|consen 632 KLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAKEAFL 708 (799)
T ss_pred ccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 01111122 221 223445556777888889887777662 34454 5677777778888999999999887
Q ss_pred hC-CCCCC-HHHHHHHHHHHHHcCChHHHHH--HHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhh
Q 008183 364 AM-PFEPD-AAVWRALLSFSAIHGKADMASK--MGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 364 ~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 433 (575)
.. -+.|+ +.+..++...+.+.|+...|.. ++..+.+.+|.++.+|..|..++.+.|+.++|...|+...+
T Consensus 709 ~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 709 VALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 76 57786 7889999999999999888887 99999999999999999999999999999999999987654
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.9e-07 Score=90.26 Aligned_cols=219 Identities=12% Similarity=-0.013 Sum_probs=113.3
Q ss_pred hCCCchHHHHHHHHhHHCC-CCcC--HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHH
Q 008183 178 QNSRLVDSLSVFADMRSSD-VGST--MYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254 (575)
Q Consensus 178 ~~g~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 254 (575)
..+..+.++.-+.++.... ..|+ ...|......+...|+.++|...|...++.. +.+...++.+...|...|++++
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 3455666666666665431 2222 2335555555666677777777776666653 3456666667777777777777
Q ss_pred HHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008183 255 ARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVR 332 (575)
Q Consensus 255 A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 332 (575)
|.+.|+.++. +.+..+|..+...+...|++++|++.|+...+. .|+..........+...++.++|...+.+....
T Consensus 117 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 117 AYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 7777766443 334556666666666677777777777666654 232221111111223445666666666543221
Q ss_pred cCCCCChhHHHHHHHHHhccCChHHH--HHHHHhC-C----CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 008183 333 YKLEPGLEHYTCLISAMGRAGRLEDA--ERIAMAM-P----FEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYD 404 (575)
Q Consensus 333 ~~~~p~~~~~~~li~~~~~~g~~~~A--~~~~~~m-~----~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 404 (575)
..|+...+ .+...+ .|+..++ .+.+.+- . +.| ...+|..+...+...|++++|...|+++++.+|++
T Consensus 195 --~~~~~~~~-~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 195 --LDKEQWGW-NIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred --CCccccHH-HHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 12222211 222222 3333222 2222111 1 111 13456666666666666666666666666666543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.2e-06 Score=83.08 Aligned_cols=218 Identities=14% Similarity=0.061 Sum_probs=174.9
Q ss_pred HhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHH
Q 008183 177 AQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256 (575)
Q Consensus 177 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 256 (575)
.-.|+...|...|+...+....++.. |.-+...|....+.++..+.|....+.. +.++.+|..-..++.-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHH
Confidence 44688999999999998865444442 7777788899999999999999999876 667888999999999999999999
Q ss_pred HHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 008183 257 RVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYK 334 (575)
Q Consensus 257 ~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 334 (575)
.-|++.+. +.++..|-.+-.+..+.+++++++..|++..+. ++--...|+.....+...++++.|.+.|+..+ .
T Consensus 415 aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai---~ 490 (606)
T KOG0547|consen 415 ADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI---E 490 (606)
T ss_pred HHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH---h
Confidence 99998554 556677777777778899999999999999887 55566788888899999999999999999774 3
Q ss_pred CCCC---------hhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 008183 335 LEPG---------LEHYTCLISAMGRAGRLEDAERIAMAM-PFEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDIN 401 (575)
Q Consensus 335 ~~p~---------~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 401 (575)
++|+ ..+.-+++.. --.+++..|.+++++. .+.|- ...|.+|...-.+.|+.++|+++|++...+-
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred hccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3444 1112222222 2348999999999987 56664 7789999999999999999999999987654
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.6e-05 Score=79.67 Aligned_cols=384 Identities=13% Similarity=0.120 Sum_probs=235.2
Q ss_pred ccHHHHHHHHhHcCCChHHHHHHHccCC--CCChhhHHHHHHHHhcCch-------------------------HHHHHH
Q 008183 33 RSIYNNLITNYSKSNLLSYSLRLFNHIP--SPNIVSWTALISAHSNSPL-------------------------SLNIFL 85 (575)
Q Consensus 33 ~~~~~~li~~~~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~-------------------------a~~~~~ 85 (575)
..+|++|.+-|.+.|.++.|+.+|++.. .-.+.-++.+.++|++-.. .+.-|+
T Consensus 248 g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e 327 (835)
T KOG2047|consen 248 GFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFE 327 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHH
Confidence 4699999999999999999999998753 2344445555555554433 222233
Q ss_pred HHhhCCCC--------CcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCC------chhHHHHHHHHHHhCCCh
Q 008183 86 SMLRHPTL--------SFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD------KPFCGSALVHFYSRFRSP 151 (575)
Q Consensus 86 ~m~~~~~~--------~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~------~~~~~~~li~~~~~~g~~ 151 (575)
.+...... --+-+..+|..-.+.+ .| +..+-...+..+++.- .| -...|-.+.+.|-..|++
T Consensus 328 ~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~--e~-~~~~~i~tyteAv~~v-dP~ka~Gs~~~Lw~~faklYe~~~~l 403 (835)
T KOG2047|consen 328 SLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLY--EG-NAAEQINTYTEAVKTV-DPKKAVGSPGTLWVEFAKLYENNGDL 403 (835)
T ss_pred HHHhccchHHHHHHHhcCCccHHHHHhhhhhh--cC-ChHHHHHHHHHHHHcc-CcccCCCChhhHHHHHHHHHHhcCcH
Confidence 32221100 0011222222222221 11 3445555666666542 11 124678889999999999
Q ss_pred HHHHHHHHhcCCCC-------cchHHHHHHHHHhCCCchHHHHHHHHhHHCCCC----------c-------CHHHHHHH
Q 008183 152 DNAKKVFDEIRERD-------VVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG----------S-------TMYCVSGA 207 (575)
Q Consensus 152 ~~A~~~f~~m~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----------p-------~~~t~~~l 207 (575)
+.|+.+|++..+-+ ..+|..-...=.+..+++.|+++.++.....-. | +...|...
T Consensus 404 ~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y 483 (835)
T KOG2047|consen 404 DDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMY 483 (835)
T ss_pred HHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHH
Confidence 99999999987632 235666666667788899999988877532111 1 11234444
Q ss_pred HHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC---CCCh-hhHHHHHHHHHH---
Q 008183 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS---VLNS-IAWNAMMAGYAQ--- 280 (575)
Q Consensus 208 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~-~~~~~li~~~~~--- 280 (575)
++---..|-++..+.+|+.+++..+.....+-| ....+-...-++++.+++++-++ .|++ ..||+-+.-+.+
T Consensus 484 ~DleEs~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ryg 562 (835)
T KOG2047|consen 484 ADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYG 562 (835)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhc
Confidence 444455678888999999998887543333222 23334456668999999998454 4554 467776665543
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHhccCChH
Q 008183 281 QGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL--CNAGLAGESEKWIERMKVRYKLEPG--LEHYTCLISAMGRAGRLE 356 (575)
Q Consensus 281 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~--~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~ 356 (575)
.-.++.|..+|++..+ |.+|...-+..|+-|- -+-|....|..++++... ++++. ...||..|.--...=-+.
T Consensus 563 g~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni~I~kaae~yGv~ 639 (835)
T KOG2047|consen 563 GTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNIYIKKAAEIYGVP 639 (835)
T ss_pred CCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCc
Confidence 3468999999999998 6777765555555443 235888899999998732 44444 467777775433222222
Q ss_pred HHHHHHHhC-CCCCCHHH---HHHHHHHHHHcCChHHHHHHHHHHHhcC-CC-CchhHHHHHHHHHhCCCchHH
Q 008183 357 DAERIAMAM-PFEPDAAV---WRALLSFSAIHGKADMASKMGKRLIDIN-PY-DDSAYVIVANVLSGVGRWDEV 424 (575)
Q Consensus 357 ~A~~~~~~m-~~~p~~~~---~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~-~~~~~~~l~~~~~~~g~~~~a 424 (575)
....+|++. ..-||..+ .--....-.+.|..+.|..++....+.- |. ++..|...=..-.+.|+-+..
T Consensus 640 ~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~ 713 (835)
T KOG2047|consen 640 RTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTY 713 (835)
T ss_pred ccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHH
Confidence 223333333 22344322 2233344567799999999999888865 43 444677877888888884433
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.5e-07 Score=87.05 Aligned_cols=91 Identities=4% Similarity=-0.240 Sum_probs=40.9
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHc
Q 008183 169 YGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGK 248 (575)
Q Consensus 169 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 248 (575)
|..+...|...|+.++|...|++..+.. +.+...|..+...+...|+++.|...++..++.. +.+...+..+..++..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 4444444444455555555554444421 1123344444444445555555555554444432 2223344444444444
Q ss_pred cCCHHHHHHHHhh
Q 008183 249 AGIVSDARRVFDE 261 (575)
Q Consensus 249 ~g~~~~A~~~~~~ 261 (575)
.|++++|.+.|+.
T Consensus 145 ~g~~~eA~~~~~~ 157 (296)
T PRK11189 145 GGRYELAQDDLLA 157 (296)
T ss_pred CCCHHHHHHHHHH
Confidence 4555555554444
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.2e-05 Score=75.65 Aligned_cols=401 Identities=12% Similarity=0.086 Sum_probs=243.8
Q ss_pred cHHHHHHHHHhhCCCcccHHHHHHHHhHcCCChHHHHHHHccCCC----------CChhhHHHHHHHHhcCch------H
Q 008183 17 DPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPS----------PNIVSWTALISAHSNSPL------S 80 (575)
Q Consensus 17 ~~~~~~~~~~~~g~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~----------~~~~~~~~li~~~~~~g~------a 80 (575)
.+..++.+-++. ++..-+--|..+++.+++++|.+.+..... .+-..|+-+-.-.+++.+ .
T Consensus 156 ts~rvyrRYLk~---~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv 232 (835)
T KOG2047|consen 156 TSIRVYRRYLKV---APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV 232 (835)
T ss_pred HHHHHHHHHHhc---CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH
Confidence 444444444332 344456677888889999999998887752 344568877777777765 5
Q ss_pred HHHHHHHhhCCCCCcCCCh--hhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhC----------
Q 008183 81 LNIFLSMLRHPTLSFLPNQ--RTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF---------- 148 (575)
Q Consensus 81 ~~~~~~m~~~~~~~~~p~~--~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~---------- 148 (575)
-.+++.+.. ..||. +.|++|.+-|.+.| .++.|+.++++.+..-. ++.-++.+-+.|+..
T Consensus 233 daiiR~gi~-----rftDq~g~Lw~SLAdYYIr~g-~~ekarDvyeeai~~v~--tvrDFt~ifd~Ya~FEE~~~~~~me 304 (835)
T KOG2047|consen 233 DAIIRGGIR-----RFTDQLGFLWCSLADYYIRSG-LFEKARDVYEEAIQTVM--TVRDFTQIFDAYAQFEESCVAAKME 304 (835)
T ss_pred HHHHHhhcc-----cCcHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHhhe--ehhhHHHHHHHHHHHHHHHHHHHHh
Confidence 566666655 45665 57889999999999 99999999999877643 233344444444432
Q ss_pred ------C------ChHHHHHHHHhcCCC---------------CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcC-
Q 008183 149 ------R------SPDNAKKVFDEIRER---------------DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGST- 200 (575)
Q Consensus 149 ------g------~~~~A~~~f~~m~~~---------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~- 200 (575)
| +++-...-|+.+.++ ++..|..-+. ...|+..+-...|.+.... +.|-
T Consensus 305 ~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~k 381 (835)
T KOG2047|consen 305 LADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKK 381 (835)
T ss_pred hhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCccc
Confidence 1 223333444444321 3444544443 3457788888888888653 3332
Q ss_pred -----HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHccCCHHHHHHHHhhhCCCC------
Q 008183 201 -----MYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRN---VIVGTGLIDGYGKAGIVSDARRVFDENLSVL------ 266 (575)
Q Consensus 201 -----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------ 266 (575)
...|..+.+.|-..|+++.|+.+|++..+..++.- ..+|-.-.++-.+..+++.|.++.+.+...|
T Consensus 382 a~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~ 461 (835)
T KOG2047|consen 382 AVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELE 461 (835)
T ss_pred CCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhh
Confidence 24577888888899999999999999887654432 4566666677777888889998887643321
Q ss_pred --------------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCC---------------------------------
Q 008183 267 --------------NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGF--------------------------------- 299 (575)
Q Consensus 267 --------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--------------------------------- 299 (575)
+...|.-.+..--..|-++....+|+.+.+..+
T Consensus 462 ~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LF 541 (835)
T KOG2047|consen 462 YYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLF 541 (835)
T ss_pred hhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccC
Confidence 112333333333334444444445544443322
Q ss_pred -CCCHH-HHHHHHHHH---HhcCCHHHHHHHHHHHHHhcCCCCCh--hHHHHHHHHHhccCChHHHHHHHHhC--CCCCC
Q 008183 300 -APDEY-SFLAVLTAL---CNAGLAGESEKWIERMKVRYKLEPGL--EHYTCLISAMGRAGRLEDAERIAMAM--PFEPD 370 (575)
Q Consensus 300 -~p~~~-t~~~ll~a~---~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~ 370 (575)
.|+.. .|+.-+.-+ .....++.|+.+|++.. + +.+|.. ..|-.....--+.|....|..++++. ++++.
T Consensus 542 k~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL-~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a 619 (835)
T KOG2047|consen 542 KWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQAL-D-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEA 619 (835)
T ss_pred CCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-h-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHH
Confidence 13321 122222221 22346788888888774 3 555542 22222222233457778888888887 33332
Q ss_pred --HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCch--hHHHHHHHHHhCCCchHHHHHHHHHhh
Q 008183 371 --AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDS--AYVIVANVLSGVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 371 --~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~ 433 (575)
...||..|.--...=-+..-..+++++++.-|++.. ...-..++-.+.|..+.|..++.--.+
T Consensus 620 ~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 620 QRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred HHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 456777776444433355567788888887665432 344566778899999999999875543
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.4e-07 Score=86.43 Aligned_cols=197 Identities=9% Similarity=0.035 Sum_probs=160.1
Q ss_pred CchhHHHHHHHHHHccCCHHHHHHHHhhhCC-CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH-HHHH
Q 008183 234 RNVIVGTGLIDGYGKAGIVSDARRVFDENLS-VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFL-AVLT 311 (575)
Q Consensus 234 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~ll~ 311 (575)
.|-.--+-+..+|.+.|.+.+|++.|+..+. .|-+.||..|-..|.+..++..|+.+|.+-.+. .|-.+||. .+..
T Consensus 221 ~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~AR 298 (478)
T KOG1129|consen 221 LDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQAR 298 (478)
T ss_pred HhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHH
Confidence 3444446688999999999999999998666 678889999999999999999999999988774 56666654 4566
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCChH
Q 008183 312 ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM---PFEPDAAVWRALLSFSAIHGKAD 388 (575)
Q Consensus 312 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~ 388 (575)
.+...++.++|.++++...... ..+++...++...|.-.++++-|+.+++++ | .-++..|+.+.-.|.-.++++
T Consensus 299 i~eam~~~~~a~~lYk~vlk~~--~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKLH--PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQID 375 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhcC--CccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchh
Confidence 7778899999999999874332 234778888888999999999999999876 5 446788889988999999999
Q ss_pred HHHHHHHHHHhcC--CC-CchhHHHHHHHHHhCCCchHHHHHHHHHhhCC
Q 008183 389 MASKMGKRLIDIN--PY-DDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435 (575)
Q Consensus 389 ~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 435 (575)
.++.-|+++.... |. ...+|..|.......|++.-|.+.|+.....+
T Consensus 376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d 425 (478)
T KOG1129|consen 376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD 425 (478)
T ss_pred hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC
Confidence 9999999998744 32 33478889999999999999999988766543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.1e-07 Score=79.77 Aligned_cols=162 Identities=16% Similarity=0.117 Sum_probs=134.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHH
Q 008183 271 WNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAM 349 (575)
Q Consensus 271 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~ 349 (575)
...|.-+|.+.|+...|..-+++..+.. +-+..++..+...|.+.|..+.|.+-|+... .+.|+ ..+.|....-+
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~FL 113 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhHHH
Confidence 3446677888899999998888888763 2255678888888899999999999988764 45665 67788888888
Q ss_pred hccCChHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHH
Q 008183 350 GRAGRLEDAERIAMAMPFEPD----AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVA 425 (575)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 425 (575)
|..|++++|...|++.-..|+ ..+|..+.-...+.|+.+.|...+++.++.+|..+.+...+.+...+.|++-.|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 999999999999988732332 6788888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCC
Q 008183 426 EVRKVMKDRRV 436 (575)
Q Consensus 426 ~~~~~m~~~~~ 436 (575)
..++....++.
T Consensus 194 ~~~~~~~~~~~ 204 (250)
T COG3063 194 LYLERYQQRGG 204 (250)
T ss_pred HHHHHHHhccc
Confidence 99998887665
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.7e-07 Score=87.03 Aligned_cols=148 Identities=14% Similarity=0.140 Sum_probs=90.8
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChh---HHHHHHHHHhccCC
Q 008183 278 YAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLE---HYTCLISAMGRAGR 354 (575)
Q Consensus 278 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~---~~~~li~~~~~~g~ 354 (575)
+...|++++|+++++.- .+.......+..+.+.++++.|.+.++.|. + +..|.. ...+.+..+.-...
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~-~--~~eD~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ-Q--IDEDSILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH-C--CSCCHHHHHHHHHHHHHHHTTTC
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH-h--cCCcHHHHHHHHHHHHHHhCchh
Confidence 44556677776666432 244555556666777777777777777763 2 233321 12222322222346
Q ss_pred hHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCc-hHHHHHHHHH
Q 008183 355 LEDAERIAMAM--PFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRW-DEVAEVRKVM 431 (575)
Q Consensus 355 ~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m 431 (575)
+.+|..+|+++ ...+++.+.+.+..++...|++++|++++.+..+.+|.++.+...++-+....|+. +.+.+.+.++
T Consensus 183 ~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 183 YQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp CCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 77787777777 33456777777777777888888888888887777777777777777777777776 5566777776
Q ss_pred hhC
Q 008183 432 KDR 434 (575)
Q Consensus 432 ~~~ 434 (575)
+..
T Consensus 263 ~~~ 265 (290)
T PF04733_consen 263 KQS 265 (290)
T ss_dssp HHH
T ss_pred HHh
Confidence 653
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.79 E-value=6.1e-06 Score=81.53 Aligned_cols=283 Identities=11% Similarity=-0.025 Sum_probs=194.5
Q ss_pred cCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCC---CCcchHHH
Q 008183 95 FLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE---RDVVCYGA 171 (575)
Q Consensus 95 ~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~ 171 (575)
..-|......-..-|.... ++.....+.+.+.+.. ++....+..=|..+...|+-.+-..+=.++.+ ...++|-+
T Consensus 240 l~~~~dll~~~ad~~y~~c-~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~a 317 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGC-RFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFA 317 (611)
T ss_pred hhhcHHHHHHHHHHHHHcC-hHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhh
Confidence 3445555556666666666 8888888888877764 45555555556666666665554444444443 25678888
Q ss_pred HHHHHHhCCCchHHHHHHHHhHHCCCCcC-HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccC
Q 008183 172 MIVGFAQNSRLVDSLSVFADMRSSDVGST-MYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250 (575)
Q Consensus 172 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 250 (575)
+.--|.-.|+..+|.+.|.+... +.|. ...|.....+++..+.-++|...+..+-+.= +-.---+--+.--|.+.+
T Consensus 318 Vg~YYl~i~k~seARry~SKat~--lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~ 394 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATT--LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTN 394 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhh--cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhc
Confidence 88888888888888888887643 2332 2357777778888888888887777665531 111111112333467778
Q ss_pred CHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHc----C-CC-CCHHHHHHHHHHHHhcCCHHHH
Q 008183 251 IVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR----G-FA-PDEYSFLAVLTALCNAGLAGES 322 (575)
Q Consensus 251 ~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g-~~-p~~~t~~~ll~a~~~~g~~~~a 322 (575)
+++.|.+.|.+++. +.|....+-+.......+.+.+|..+|+..... + -. --..+++.|..+|.+.+.+++|
T Consensus 395 n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred cHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 88888888877554 567777777777777778888888888776521 1 11 2456788888899999999999
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHc
Q 008183 323 EKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEPDAAVWRALLSFSAIH 384 (575)
Q Consensus 323 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~ 384 (575)
...+++.... .+.+..++.++.-.|...|+++.|.+.|.+. .+.||-.+-..++..+...
T Consensus 475 I~~~q~aL~l--~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 475 IDYYQKALLL--SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHHHc--CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 9999877432 2345788888888899999999999999887 6889887777777766544
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.1e-06 Score=85.83 Aligned_cols=147 Identities=14% Similarity=0.098 Sum_probs=99.2
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC-------------CCCCh--hHHHHHHHHHhc
Q 008183 287 VLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYK-------------LEPGL--EHYTCLISAMGR 351 (575)
Q Consensus 287 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-------------~~p~~--~~~~~li~~~~~ 351 (575)
+...+..+...|+++ +|+.|-..|......+-..+++..+..... -.|.. .++.-+...|-.
T Consensus 130 ~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~ 206 (517)
T PF12569_consen 130 LDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDY 206 (517)
T ss_pred HHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHH
Confidence 344555666777653 444444445544445555555554432210 12333 244556777888
Q ss_pred cCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHH
Q 008183 352 AGRLEDAERIAMAM-PFEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRK 429 (575)
Q Consensus 352 ~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 429 (575)
.|++++|++++++. ...|+ +..|..-...+...|++++|.+.++.+.++++.|-..-.-.+..+.++|++++|.+++.
T Consensus 207 ~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~ 286 (517)
T PF12569_consen 207 LGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTAS 286 (517)
T ss_pred hCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 88888888888865 55675 66777777888888888888888888888888776666667778888888888888888
Q ss_pred HHhhCCC
Q 008183 430 VMKDRRV 436 (575)
Q Consensus 430 ~m~~~~~ 436 (575)
.....+.
T Consensus 287 ~Ftr~~~ 293 (517)
T PF12569_consen 287 LFTREDV 293 (517)
T ss_pred hhcCCCC
Confidence 8776655
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.1e-05 Score=82.85 Aligned_cols=281 Identities=10% Similarity=0.065 Sum_probs=152.8
Q ss_pred HHhCCChHHHHHHHHhcCC--CCcch-HHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHH----h--cc
Q 008183 145 YSRFRSPDNAKKVFDEIRE--RDVVC-YGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAA----E--LA 215 (575)
Q Consensus 145 ~~~~g~~~~A~~~f~~m~~--~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~----~--~~ 215 (575)
+...|++++|++.++.-.. .|..+ .......+.+.|+.++|..+|..+... .|+...|-..+..+. . ..
T Consensus 14 l~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhcccccc
Confidence 4556677777776665433 24333 334455666667777777777777664 355555444444443 1 12
Q ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHH-HHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Q 008183 216 AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA-RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLL 294 (575)
Q Consensus 216 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 294 (575)
+.+....+++.+...- |.......+.-.+.....+... ...+..++.+.=+.+++.+-..|.......-..+++...
T Consensus 92 ~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~ 169 (517)
T PF12569_consen 92 DVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEY 169 (517)
T ss_pred cHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHH
Confidence 3455556666554431 2222222221111121222222 222222122222234455555555444444444444444
Q ss_pred HHc----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHH
Q 008183 295 EMR----G----------FAPDE--YSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLED 357 (575)
Q Consensus 295 ~~~----g----------~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~ 357 (575)
... | -.|.. .++.-+...|...|++++|.++.++.+. ..|+ +..|..-...|-+.|++++
T Consensus 170 ~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G~~~~ 246 (517)
T PF12569_consen 170 VNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAGDLKE 246 (517)
T ss_pred HHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCCCHHH
Confidence 322 1 12333 2344455566778888888888886643 3566 6777777888888888888
Q ss_pred HHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCC-------chhHHHHHHHHHhCCCchHHHH
Q 008183 358 AERIAMAMP-FEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDIN--PYD-------DSAYVIVANVLSGVGRWDEVAE 426 (575)
Q Consensus 358 A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~-------~~~~~~l~~~~~~~g~~~~a~~ 426 (575)
|.+.++... +.+ |...-+-....+.+.|+.++|++++......+ |.. .....-.+.+|.+.|++..|.+
T Consensus 247 Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk 326 (517)
T PF12569_consen 247 AAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALK 326 (517)
T ss_pred HHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 888877762 333 55555666677778888888888877776544 211 1112345677888888888877
Q ss_pred HHHHHh
Q 008183 427 VRKVMK 432 (575)
Q Consensus 427 ~~~~m~ 432 (575)
-|..+.
T Consensus 327 ~~~~v~ 332 (517)
T PF12569_consen 327 RFHAVL 332 (517)
T ss_pred HHHHHH
Confidence 655443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.4e-06 Score=74.17 Aligned_cols=195 Identities=15% Similarity=0.044 Sum_probs=84.9
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHc
Q 008183 204 VSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQ 281 (575)
Q Consensus 204 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~ 281 (575)
..-+.-.|...|+...|+.-++..++.. +.+..++..+...|.+.|+.+.|.+-|+.++. +.+-...|....-+|..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC
Confidence 3334444444555555555555555443 33344444445555555555555555554333 33334444444444555
Q ss_pred CChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHH
Q 008183 282 GDQSTVLELFHLLEMRGFAP-DEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAE 359 (575)
Q Consensus 282 g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~ 359 (575)
|++++|...|++......-| -..||..+.-+..+.|+.+.|..+|.+.. ...|+ ..+...+.....+.|++..|.
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL---~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRAL---ELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHH---HhCcCCChHHHHHHHHHHhcccchHHH
Confidence 55555555554444331111 12344444444444455555555544332 11232 233344444444444444444
Q ss_pred HHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 008183 360 RIAMAM--PFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINP 402 (575)
Q Consensus 360 ~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 402 (575)
.+++.. ...++..+.-..|..-...||.+.+.+.-..+...-|
T Consensus 194 ~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP 238 (250)
T COG3063 194 LYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFP 238 (250)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 444443 1123333333333444444444444444444444434
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.72 E-value=3e-05 Score=77.63 Aligned_cols=293 Identities=11% Similarity=-0.064 Sum_probs=152.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHhcCC---CCcch---HHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHH-HHHHHHHH
Q 008183 138 GSALVHFYSRFRSPDNAKKVFDEIRE---RDVVC---YGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMY-CVSGALRA 210 (575)
Q Consensus 138 ~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~ 210 (575)
+..+...+...|+.+++.+.+....+ ++... .......+...|++++|.+.+++..+. .|+.. .+.. ...
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~-~~~ 85 (355)
T cd05804 9 HAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-hHH
Confidence 33444445455555555444443321 12111 112233455667777777777776654 23322 2221 112
Q ss_pred HHh----cccHHHHHHHHHHHHHhCCCCc-hhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCC
Q 008183 211 AAE----LAAMEQCRVIHGHAVVSGLDRN-VIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGD 283 (575)
Q Consensus 211 ~~~----~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~ 283 (575)
+.. .+..+.+.+.+.. ..+..|+ ......+...+...|++++|.+.+++.+. +.+...+..+...|...|+
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC
Confidence 222 2333334443333 1111222 33334455667777788888777777444 3445566667777777888
Q ss_pred hHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHH-H--HHHHHHhccCChHH
Q 008183 284 QSTVLELFHLLEMRGF-APDE--YSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHY-T--CLISAMGRAGRLED 357 (575)
Q Consensus 284 ~~~A~~l~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-~--~li~~~~~~g~~~~ 357 (575)
+++|...+++...... .|+. ..+..+...+...|++++|..++++........+..... + .++.-+...|..+.
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 8888887777665422 1222 234456666777788888888887663211111111111 1 22333333443333
Q ss_pred HHHH---HHhC-CCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-C---C-----CchhHHHHHHHHHhCCCc
Q 008183 358 AERI---AMAM-PFEP---DAAVWRALLSFSAIHGKADMASKMGKRLIDIN-P---Y-----DDSAYVIVANVLSGVGRW 421 (575)
Q Consensus 358 A~~~---~~~m-~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p---~-----~~~~~~~l~~~~~~~g~~ 421 (575)
+.++ ...- +..| ..........++...|+.+.|..+++.+.... . . .........-++...|++
T Consensus 244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~ 323 (355)
T cd05804 244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNY 323 (355)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCH
Confidence 3322 1111 1001 12222345566677888888888888876522 1 1 122344555667899999
Q ss_pred hHHHHHHHHHhhCC
Q 008183 422 DEVAEVRKVMKDRR 435 (575)
Q Consensus 422 ~~a~~~~~~m~~~~ 435 (575)
++|.+.+.......
T Consensus 324 ~~A~~~L~~al~~a 337 (355)
T cd05804 324 ATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988776543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.71 E-value=8.2e-05 Score=78.27 Aligned_cols=242 Identities=10% Similarity=0.068 Sum_probs=168.7
Q ss_pred HHHHHHHHHhhCC---CcccHHHHHHHHhHcCCChHHHHHHHccCC-CCChhh-----HHHHHHHHhcCch--HHHHHHH
Q 008183 18 PRIVHARALKSSQ---ADRSIYNNLITNYSKSNLLSYSLRLFNHIP-SPNIVS-----WTALISAHSNSPL--SLNIFLS 86 (575)
Q Consensus 18 ~~~~~~~~~~~g~---~~~~~~~~li~~~~~~g~~~~A~~~f~~m~-~~~~~~-----~~~li~~~~~~g~--a~~~~~~ 86 (575)
-+++.+++++.++ .|+.--...+.++...+-+.+-.++++++. .|++++ -|.||-.-.+... ..+..++
T Consensus 966 rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~r 1045 (1666)
T KOG0985|consen 966 RRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINR 1045 (1666)
T ss_pred HHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHH
Confidence 4778888888886 677777888899999999999999998875 454444 4455554455544 6666666
Q ss_pred HhhCCCCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCCCCc
Q 008183 87 MLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDV 166 (575)
Q Consensus 87 m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~ 166 (575)
+-... .|+. ...+...+ -.++|..+|... ..+....+.||+ .-++++.|.+.-+...+|
T Consensus 1046 LdnyD----a~~i------a~iai~~~-LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n~p-- 1104 (1666)
T KOG0985|consen 1046 LDNYD----APDI------AEIAIENQ-LYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCNEP-- 1104 (1666)
T ss_pred hccCC----chhH------HHHHhhhh-HHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhCCh--
Confidence 55432 2332 22334444 667777776653 445555555654 457788888887776654
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 008183 167 VCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGY 246 (575)
Q Consensus 167 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 246 (575)
..|+.+..+-.+.|...+|++-|-+. -|+..|..++..+.+.|.+++-..++....+..-+|. +-+.||-+|
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~Ay 1176 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIFAY 1176 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHHH
Confidence 57999999999999999999888654 4667899999999999999998888888877765554 457899999
Q ss_pred HccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHH
Q 008183 247 GKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFH 292 (575)
Q Consensus 247 ~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 292 (575)
++.+++.+-+++... ||+.....+..-|...|.++.|.-+|.
T Consensus 1177 Akt~rl~elE~fi~g----pN~A~i~~vGdrcf~~~~y~aAkl~y~ 1218 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFIAG----PNVANIQQVGDRCFEEKMYEAAKLLYS 1218 (1666)
T ss_pred HHhchHHHHHHHhcC----CCchhHHHHhHHHhhhhhhHHHHHHHH
Confidence 999999888777544 454444455555555555555554443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.71 E-value=0.00042 Score=69.26 Aligned_cols=396 Identities=10% Similarity=0.065 Sum_probs=214.7
Q ss_pred CCccHHHHHHHHHhhCCCcccHHHHHHHHhHcCCChHHHHHHHccCCCCChhhHHH--HHHHHhcCch-----HHHHHHH
Q 008183 14 TSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTA--LISAHSNSPL-----SLNIFLS 86 (575)
Q Consensus 14 ~~~~~~~~~~~~~~~g~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~--li~~~~~~g~-----a~~~~~~ 86 (575)
..+.+.+.-..++..+..++...-.=+-.....+++++|+++.+.-... .++|. +=.+|+.... |+..+.
T Consensus 27 e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~Dealk~~~- 103 (652)
T KOG2376|consen 27 EYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKLDEALKTLK- 103 (652)
T ss_pred HHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccHHHHHHHHh-
Confidence 3344555555555555433333333344556667777777665543311 11222 2344443322 666655
Q ss_pred HhhCCCCCcCC-ChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCC-chhHHHHHHHHHHhCCChHHHHHHHHhcCCC
Q 008183 87 MLRHPTLSFLP-NQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD-KPFCGSALVHFYSRFRSPDNAKKVFDEIRER 164 (575)
Q Consensus 87 m~~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~ 164 (575)
+ ..+ |..+...--..|.+.+ +++++..++..+.+.+.+. +...-..++..-.. -.+. +.+..+..
T Consensus 104 ----~---~~~~~~~ll~L~AQvlYrl~-~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~~-~~q~v~~v 170 (652)
T KOG2376|consen 104 ----G---LDRLDDKLLELRAQVLYRLE-RYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQVQ-LLQSVPEV 170 (652)
T ss_pred ----c---ccccchHHHHHHHHHHHHHh-hHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhHH-HHHhccCC
Confidence 2 233 2335555556788888 8999999998888776432 22222222221111 1111 34444443
Q ss_pred CcchHHH---HHHHHHhCCCchHHHHHHHHhHHCC-------CCcCH------H-HHHHHHHHHHhcccHHHHHHHHHHH
Q 008183 165 DVVCYGA---MIVGFAQNSRLVDSLSVFADMRSSD-------VGSTM------Y-CVSGALRAAAELAAMEQCRVIHGHA 227 (575)
Q Consensus 165 ~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g-------~~p~~------~-t~~~ll~~~~~~~~~~~a~~~~~~~ 227 (575)
...+|.. ....+...|++.+|+++++.....+ -.-+. . .-.-+.-++-..|+.++|..++...
T Consensus 171 ~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~ 250 (652)
T KOG2376|consen 171 PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDI 250 (652)
T ss_pred CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 3334333 2345667788888888888772211 00111 1 1112333445678888888888888
Q ss_pred HHhCCCCch----hHHHHHHHHHHcc---------------------------------------------CCHHHHHHH
Q 008183 228 VVSGLDRNV----IVGTGLIDGYGKA---------------------------------------------GIVSDARRV 258 (575)
Q Consensus 228 ~~~g~~~~~----~~~~~li~~~~~~---------------------------------------------g~~~~A~~~ 258 (575)
++.. ++|. ...|.|+.+-.-. +.-+.+.++
T Consensus 251 i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~ 329 (652)
T KOG2376|consen 251 IKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVREL 329 (652)
T ss_pred HHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 7765 3333 1222232221111 111122222
Q ss_pred HhhhCCCC-ChhhHHHHHHHH--HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------
Q 008183 259 FDENLSVL-NSIAWNAMMAGY--AQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIE-------- 327 (575)
Q Consensus 259 ~~~~~~~~-~~~~~~~li~~~--~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~-------- 327 (575)
-.. ++.. ....+.+++... ++...+.+|.+++...-+....-..+.....+......|+++.|.+++.
T Consensus 330 ~a~-lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~s 408 (652)
T KOG2376|consen 330 SAS-LPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKS 408 (652)
T ss_pred HHh-CCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhh
Confidence 222 2111 122333333332 2223466777777766554222223455555566677899999999998
Q ss_pred HHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008183 328 RMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM--------PFEPD-AAVWRALLSFSAIHGKADMASKMGKRLI 398 (575)
Q Consensus 328 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 398 (575)
.+ .+.+-.| .+..+++..|.+.++-+.|..++.+. .-.+. ..+|.-+...-.++|+.++|..+++++.
T Consensus 409 s~-~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~ 485 (652)
T KOG2376|consen 409 SI-LEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELV 485 (652)
T ss_pred hh-hhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHH
Confidence 44 3333334 45567778888887766666655544 12222 3344455555567899999999999999
Q ss_pred hcCCCCchhHHHHHHHHHhCCCchHHHHHHHHH
Q 008183 399 DINPYDDSAYVIVANVLSGVGRWDEVAEVRKVM 431 (575)
Q Consensus 399 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 431 (575)
+.+|++..+...++.+|++. +.+.|..+-+.+
T Consensus 486 k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 486 KFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 99999999999999999987 567777664433
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.6e-05 Score=72.02 Aligned_cols=291 Identities=9% Similarity=-0.039 Sum_probs=197.7
Q ss_pred HHHHHHHHHHhC--CChHHHHHHHHhc--CC---CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHH-HHHHH
Q 008183 137 CGSALVHFYSRF--RSPDNAKKVFDEI--RE---RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYC-VSGAL 208 (575)
Q Consensus 137 ~~~~li~~~~~~--g~~~~A~~~f~~m--~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll 208 (575)
....-+.+|+.+ ++-..|...|-.+ .. .|+.....+...+...|+.++|+..|++.+. +.|+..+ .....
T Consensus 196 wls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~--~dpy~i~~MD~Ya 273 (564)
T KOG1174|consen 196 WLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC--ANPDNVEAMDLYA 273 (564)
T ss_pred HHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh--CChhhhhhHHHHH
Confidence 334455555554 3444444443322 22 3777888999999999999999999998765 3454332 11112
Q ss_pred HHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHH
Q 008183 209 RAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQST 286 (575)
Q Consensus 209 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~ 286 (575)
-.+...|+.+....+...+.... .-+...|-.-........+++.|+.+-++.+. ++++..+-.=...+.+.|++++
T Consensus 274 ~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~ 352 (564)
T KOG1174|consen 274 VLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQ 352 (564)
T ss_pred HHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHH
Confidence 22345677777766666665432 12222333333444556778888888877444 4555555545566889999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHH-HHHhc-cCChHHHHHHHHh
Q 008183 287 VLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLI-SAMGR-AGRLEDAERIAMA 364 (575)
Q Consensus 287 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li-~~~~~-~g~~~~A~~~~~~ 364 (575)
|.-.|+..+... +-+...|..|+.+|...|+..+|...-+..... +..+..+.+.+. ..+.- ..--++|.+++++
T Consensus 353 A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek 429 (564)
T KOG1174|consen 353 AVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEK 429 (564)
T ss_pred HHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHh
Confidence 999999888742 236789999999999999999988776655322 233455544442 22222 2334788888887
Q ss_pred C-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 365 M-PFEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 365 m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
- .++|+ ....+.+...|...|..+.+..++++.+...| |....+.|.+.+...+.+.+|...|......
T Consensus 430 ~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~-D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 430 SLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP-DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred hhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 6 67887 66777888889999999999999999998877 4468899999999999999999998876654
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.1e-08 Score=60.35 Aligned_cols=34 Identities=21% Similarity=0.276 Sum_probs=28.5
Q ss_pred hCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcC
Q 008183 129 LSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIR 162 (575)
Q Consensus 129 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 162 (575)
.|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3678888888888888888888888888888874
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=6.8e-07 Score=88.42 Aligned_cols=219 Identities=12% Similarity=0.051 Sum_probs=174.9
Q ss_pred HhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHH
Q 008183 212 AELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLE 289 (575)
Q Consensus 212 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~ 289 (575)
.+.|++.+|.-.|+..++.. |-+...|.-|.-.....++-..|+..+.+.++ +.|....-+|...|...|.-.+|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 46788999999999888875 66788898898888888888888888887544 5677788888889999999999999
Q ss_pred HHHHHHHcCCC-----C---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHH
Q 008183 290 LFHLLEMRGFA-----P---DEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERI 361 (575)
Q Consensus 290 l~~~m~~~g~~-----p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 361 (575)
.++.-.....+ + +..+-.. +.......+.+..++|-++....+..+|..++..|.-.|--.|.+++|.+.
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 99887553211 0 1000000 122222344566677777766767667888899999999999999999999
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhh
Q 008183 362 AMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 362 ~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 433 (575)
|+.. .++| |...||-|...++...+.++|+..|++++++.|.-..+...|.-.|...|.+++|.+.|-....
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9987 6788 5889999999999999999999999999999999989989999999999999999998876543
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.61 E-value=5e-06 Score=89.94 Aligned_cols=202 Identities=11% Similarity=0.108 Sum_probs=170.4
Q ss_pred CCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCC-------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH
Q 008183 233 DRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL-------NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYS 305 (575)
Q Consensus 233 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 305 (575)
|-....|-..|......+++++|+++++++++.- -...|-++++.-...|.-+...++|++..+. .-....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 4556778888888999999999999999877633 2357888888888888888999999999875 223456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC---CHHHHHHHHHHH
Q 008183 306 FLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP---DAAVWRALLSFS 381 (575)
Q Consensus 306 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~~~ll~~~ 381 (575)
|..|...|.+.+..++|.++++.|.++++ .....|...++.+.+..+-+.|..++.+. ..-| .+....-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88899999999999999999999988876 56789999999999999999999999876 3233 344455556666
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCCCcc
Q 008183 382 AIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRK 438 (575)
Q Consensus 382 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 438 (575)
.+.|+.+++..+|+..+.-.|.-...|+.++++-.+.|+.+.++.+|++....++.+
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 789999999999999999999999999999999999999999999999999887753
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.4e-08 Score=59.64 Aligned_cols=33 Identities=27% Similarity=0.493 Sum_probs=31.1
Q ss_pred hCC-CcccHHHHHHHHhHcCCChHHHHHHHccCC
Q 008183 28 SSQ-ADRSIYNNLITNYSKSNLLSYSLRLFNHIP 60 (575)
Q Consensus 28 ~g~-~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 60 (575)
.|+ ||..+||.||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 478 999999999999999999999999999995
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.00014 Score=72.80 Aligned_cols=252 Identities=11% Similarity=0.068 Sum_probs=145.8
Q ss_pred HHHhCCChHHHHHHHHhcCC--C-CcchHHHHHHHHHh----CCCchHHHHHHHHhHHCCCCcCH-HHHHHHHHHHHhcc
Q 008183 144 FYSRFRSPDNAKKVFDEIRE--R-DVVCYGAMIVGFAQ----NSRLVDSLSVFADMRSSDVGSTM-YCVSGALRAAAELA 215 (575)
Q Consensus 144 ~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~ 215 (575)
.+...|++++|.+.+++..+ | |...++. ...+.. .+....+.+.+.. ..+..|+. .....+...+...|
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G 128 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAG 128 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcC
Confidence 45567788888887776543 2 3334442 222222 3444444444443 12223333 33445556677788
Q ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCC----CCh--hhHHHHHHHHHHcCChHHHHH
Q 008183 216 AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSV----LNS--IAWNAMMAGYAQQGDQSTVLE 289 (575)
Q Consensus 216 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~--~~~~~li~~~~~~g~~~~A~~ 289 (575)
++++|...++...+.. +.+...+..+...|...|++++|...+++.++. ++. ..|..+...+...|++++|+.
T Consensus 129 ~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 207 (355)
T cd05804 129 QYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALA 207 (355)
T ss_pred CHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHH
Confidence 8888888888888765 555677788888888899999999988874441 222 235567778889999999999
Q ss_pred HHHHHHHcCC-CCCHHHH-H--HHHHHHHhcCCHHHHHHH--HHHHHHhcCCCCC--hhHHHHHHHHHhccCChHHHHHH
Q 008183 290 LFHLLEMRGF-APDEYSF-L--AVLTALCNAGLAGESEKW--IERMKVRYKLEPG--LEHYTCLISAMGRAGRLEDAERI 361 (575)
Q Consensus 290 l~~~m~~~g~-~p~~~t~-~--~ll~a~~~~g~~~~a~~~--~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~ 361 (575)
+|++...... .+..... + .++.-+...|..+.+.++ +...... ..... .........++...|+.++|..+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~ 286 (355)
T cd05804 208 IYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAW-HFPDHGLAFNDLHAALALAGAGDKDALDKL 286 (355)
T ss_pred HHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 9988754322 2222222 1 223333344443333333 2111111 11111 12222456677888999999999
Q ss_pred HHhCC--CCC---C----HHHHHHHH--HHHHHcCChHHHHHHHHHHHhc
Q 008183 362 AMAMP--FEP---D----AAVWRALL--SFSAIHGKADMASKMGKRLIDI 400 (575)
Q Consensus 362 ~~~m~--~~p---~----~~~~~~ll--~~~~~~g~~~~a~~~~~~~~~~ 400 (575)
++.+. ... . ..+-..++ -++...|+.++|.+.+.+.+..
T Consensus 287 L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 287 LAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88771 111 1 11222233 3445789999999998887753
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.9e-06 Score=80.06 Aligned_cols=247 Identities=11% Similarity=0.025 Sum_probs=155.6
Q ss_pred hCCChHHHHHHHHhcCCC----CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHH
Q 008183 147 RFRSPDNAKKVFDEIRER----DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRV 222 (575)
Q Consensus 147 ~~g~~~~A~~~f~~m~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 222 (575)
-.|++..+..-.+ .... +.....-+.++|...|+++.++ .+..... .|.......+...+....+-+.+..
T Consensus 13 y~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~ 87 (290)
T PF04733_consen 13 YLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALE 87 (290)
T ss_dssp CTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHH
T ss_pred HhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHH
Confidence 3466666664444 2111 2233445667777778766544 3333332 5555444444443433333333333
Q ss_pred HHHHHHHhCCC-CchhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 008183 223 IHGHAVVSGLD-RNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAP 301 (575)
Q Consensus 223 ~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 301 (575)
-+...+..... .+..+......+|...|++++|++++.. . .+.......+..|.+.++++.|.+.++.|.+. .
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~-~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~- 161 (290)
T PF04733_consen 88 ELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHK-G--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--D- 161 (290)
T ss_dssp HHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTT-T--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--S-
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHc-c--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C-
Confidence 33322222222 2334444445667788999999998887 4 45666677788999999999999999999874 3
Q ss_pred CHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHH
Q 008183 302 DEYSFLAVLTALCN----AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWR 375 (575)
Q Consensus 302 ~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~ 375 (575)
+..+...+..++.. ...+.+|..+|+++..+ ..++..+.+.+..+....|++++|.+++.+. ...| |+.+..
T Consensus 162 eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~La 239 (290)
T PF04733_consen 162 EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLA 239 (290)
T ss_dssp CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHH
Confidence 33445556665543 34689999999998543 4577888899999999999999999998875 4445 477777
Q ss_pred HHHHHHHHcCCh-HHHHHHHHHHHhcCCCCch
Q 008183 376 ALLSFSAIHGKA-DMASKMGKRLIDINPYDDS 406 (575)
Q Consensus 376 ~ll~~~~~~g~~-~~a~~~~~~~~~~~p~~~~ 406 (575)
.++......|+. +.+.+.+.++....|.++.
T Consensus 240 Nliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 240 NLIVCSLHLGKPTEAAERYLSQLKQSNPNHPL 271 (290)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHhCCCChH
Confidence 888888888887 6788899999988887653
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.00014 Score=66.31 Aligned_cols=380 Identities=8% Similarity=0.034 Sum_probs=225.1
Q ss_pred HHHHHHHHhHcCCChHHHHHHHccCCCC---ChhhHHHHHHHHhcCch---HHHHHHHHhhCCCCCcCCChhhHHHH-HH
Q 008183 35 IYNNLITNYSKSNLLSYSLRLFNHIPSP---NIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASL-FK 107 (575)
Q Consensus 35 ~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~---a~~~~~~m~~~~~~~~~p~~~t~~~l-l~ 107 (575)
-+++.+..+.+..++++|.+++..-.++ +....+.|-..|-+..+ |-+.|+++.. ..|...-|..- ..
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q-----l~P~~~qYrlY~AQ 86 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ-----LHPELEQYRLYQAQ 86 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hChHHHHHHHHHHH
Confidence 3567777778889999999998765533 44556666666666666 8888998877 44555444321 23
Q ss_pred HHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHH----HHHhCCChHHHHHHHHhcC-CCCcchHHHHHHHHHhCCCc
Q 008183 108 TCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVH----FYSRFRSPDNAKKVFDEIR-ERDVVCYGAMIVGFAQNSRL 182 (575)
Q Consensus 108 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~----~~~~~g~~~~A~~~f~~m~-~~~~~~~~~li~~~~~~g~~ 182 (575)
.+.+.+ .+..|.++...|... ....+..+. ..-..+++..+..+.++.+ +.+..+.+.......+.|++
T Consensus 87 SLY~A~-i~ADALrV~~~~~D~-----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 87 SLYKAC-IYADALRVAFLLLDN-----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQY 160 (459)
T ss_pred HHHHhc-ccHHHHHHHHHhcCC-----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccH
Confidence 344555 666777777666432 222222221 1235688999999999998 46777777777777899999
Q ss_pred hHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCch---------------------hHHHH
Q 008183 183 VDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNV---------------------IVGTG 241 (575)
Q Consensus 183 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~---------------------~~~~~ 241 (575)
+.|++-|+...+-+---....|+..+. ..+.++.+.|.+...++++.|+...+ -.-++
T Consensus 161 EaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sa 239 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSA 239 (459)
T ss_pred HHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHH
Confidence 999999999877543334456766554 44668899999999999888754321 11223
Q ss_pred HH-------HHHHccCCHHHHHHHHhhhCCC-----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 008183 242 LI-------DGYGKAGIVSDARRVFDENLSV-----LNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAV 309 (575)
Q Consensus 242 li-------~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 309 (575)
++ ..+.+.|+++.|.+.+-. |++ .|.+|...+.-. -..+++.+..+-+.-+...+. -...||..+
T Consensus 240 l~eAfNLKaAIeyq~~n~eAA~eaLtD-mPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANl 316 (459)
T KOG4340|consen 240 LVEAFNLKAAIEYQLRNYEAAQEALTD-MPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANL 316 (459)
T ss_pred HHHHhhhhhhhhhhcccHHHHHHHhhc-CCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHH
Confidence 33 345678999999999988 763 355665443322 123445555555555555433 346789899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcCCC-CChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHH-HHcCCh
Q 008183 310 LTALCNAGLAGESEKWIERMKVRYKLE-PGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFS-AIHGKA 387 (575)
Q Consensus 310 l~a~~~~g~~~~a~~~~~~m~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~-~~~g~~ 387 (575)
+-.||+..-++.|-.++.+- ...... .+...|+.|=......-..++|++-++.+.-.-....-...+..- .++.+-
T Consensus 317 LllyCKNeyf~lAADvLAEn-~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~d 395 (459)
T KOG4340|consen 317 LLLYCKNEYFDLAADVLAEN-AHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRD 395 (459)
T ss_pred HHHHhhhHHHhHHHHHHhhC-cchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999889888887633 111111 123344433333334556777776655441000000000111111 111111
Q ss_pred HH----HHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhh
Q 008183 388 DM----ASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 388 ~~----a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 433 (575)
++ +.+-+++.+++-- .+...-...|.+..++..++++|..-.+
T Consensus 396 d~a~R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 396 DEAIRKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 12 2222333333221 1233445667788888888888876544
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.0001 Score=68.62 Aligned_cols=287 Identities=14% Similarity=0.093 Sum_probs=181.4
Q ss_pred HHHHHhCCChHHHHHHHHhcCCCCcchHHHHH---HHHHhCCCchHHHHHHHHhHHCCCCcCHHHHH-HHHHHHHhcccH
Q 008183 142 VHFYSRFRSPDNAKKVFDEIRERDVVCYGAMI---VGFAQNSRLVDSLSVFADMRSSDVGSTMYCVS-GALRAAAELAAM 217 (575)
Q Consensus 142 i~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~~~~ 217 (575)
-..+...|++.+|+.-|....+-|+..|-++. ..|...|+..-|+.-|.+..+ ++||-..-. --...+.++|.+
T Consensus 45 Gk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~Gel 122 (504)
T KOG0624|consen 45 GKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQGEL 122 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhcccH
Confidence 34444567777777777777777777776664 357777777777777777765 466643211 112334567788
Q ss_pred HHHHHHHHHHHHhCCCCc--h------------hHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHc
Q 008183 218 EQCRVIHGHAVVSGLDRN--V------------IVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQ 281 (575)
Q Consensus 218 ~~a~~~~~~~~~~g~~~~--~------------~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~ 281 (575)
+.|..=|+.+++..-..+ . ......+..+...|+...|.+.....++ +.|...|..-..+|...
T Consensus 123 e~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~ 202 (504)
T KOG0624|consen 123 EQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAE 202 (504)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhc
Confidence 888887877776632111 1 1112233445667777777777766443 56777777777888888
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhH----HHHH---------HHH
Q 008183 282 GDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEH----YTCL---------ISA 348 (575)
Q Consensus 282 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~----~~~l---------i~~ 348 (575)
|++..|+.=++...+.. .-+..++.-+-..+...|+.+.++...++.. .+.||-.. |-.| +..
T Consensus 203 ~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---KldpdHK~Cf~~YKklkKv~K~les~e~ 278 (504)
T KOG0624|consen 203 GEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL---KLDPDHKLCFPFYKKLKKVVKSLESAEQ 278 (504)
T ss_pred CcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 88888887776665542 2345555556666677788887777666552 45676322 2211 112
Q ss_pred HhccCChHHHHHHHHhC-CCCCC--H---HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCch
Q 008183 349 MGRAGRLEDAERIAMAM-PFEPD--A---AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWD 422 (575)
Q Consensus 349 ~~~~g~~~~A~~~~~~m-~~~p~--~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 422 (575)
..+.+++.++.+-.+.. ...|. . ..+..+-..+...+++.+|++...++++.+|+|..++.--..+|....+++
T Consensus 279 ~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD 358 (504)
T KOG0624|consen 279 AIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYD 358 (504)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHH
Confidence 33445666666555543 33443 1 223334455566778888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhhC
Q 008183 423 EVAEVRKVMKDR 434 (575)
Q Consensus 423 ~a~~~~~~m~~~ 434 (575)
+|+.-++...+.
T Consensus 359 ~AI~dye~A~e~ 370 (504)
T KOG0624|consen 359 DAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHHHhc
Confidence 888877766543
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.0011 Score=67.07 Aligned_cols=347 Identities=11% Similarity=0.053 Sum_probs=212.0
Q ss_pred HHHHHHHHhhCCCCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHH
Q 008183 80 SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFD 159 (575)
Q Consensus 80 a~~~~~~m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~ 159 (575)
|.+..+.-.+. .|-....-.++..+.+...+.+++.+.+.-+.+.+ +.|..++.-|--.-++.|+++.....-.
T Consensus 60 a~~~vr~glr~-----d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~ 133 (700)
T KOG1156|consen 60 AYELVRLGLRN-----DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRN 133 (700)
T ss_pred HHHHHHHHhcc-----CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 66665555442 23334445566666666558889988888888766 5566777777666777777777666655
Q ss_pred hcCC---CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCC-CcCHHHHHHHHH------HHHhcccHHHHHHHHHHHHH
Q 008183 160 EIRE---RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV-GSTMYCVSGALR------AAAELAAMEQCRVIHGHAVV 229 (575)
Q Consensus 160 ~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~------~~~~~~~~~~a~~~~~~~~~ 229 (575)
...+ .....|..+..++.-.|++..|..+.++..+... .|+...+.-... .....|.++.|.+.+.....
T Consensus 134 ~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~ 213 (700)
T KOG1156|consen 134 QLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK 213 (700)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh
Confidence 5543 3567899999999999999999999999877542 466655543322 23445666666665544332
Q ss_pred hCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC-CCChhhHHHHH-HHHHHcCChHHHH-HHH---------------
Q 008183 230 SGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS-VLNSIAWNAMM-AGYAQQGDQSTVL-ELF--------------- 291 (575)
Q Consensus 230 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~li-~~~~~~g~~~~A~-~l~--------------- 291 (575)
. +......-..-.+.+.+.+++++|..++...+. .||...|+-.. .++.+-.+.-++. .+|
T Consensus 214 ~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~R 292 (700)
T KOG1156|consen 214 Q-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRR 292 (700)
T ss_pred H-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchh
Confidence 2 122233334456778888999999999988333 56655554433 3332222222222 333
Q ss_pred -------------------HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HhcC----------CCCCh
Q 008183 292 -------------------HLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMK---VRYK----------LEPGL 339 (575)
Q Consensus 292 -------------------~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~---~~~~----------~~p~~ 339 (575)
..+.+.|++|- |..+.+-+-.....+--.++.-.+. ...| -+|..
T Consensus 293 lplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~Ptt 369 (700)
T KOG1156|consen 293 LPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTT 369 (700)
T ss_pred ccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchH
Confidence 33334444432 2222222222111111111111111 1111 13444
Q ss_pred h--HHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 008183 340 E--HYTCLISAMGRAGRLEDAERIAMAM-PFEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVL 415 (575)
Q Consensus 340 ~--~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 415 (575)
. ++-.++..|-+.|+++.|..+++.. +-.|+ +.-|-.=...+...|++++|..++++..+++-.|...-.--++-.
T Consensus 370 llWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYm 449 (700)
T KOG1156|consen 370 LLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYM 449 (700)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 3 4456778889999999999999887 55666 444555557778889999999999999999855533222345566
Q ss_pred HhCCCchHHHHHHHHHhhCCC
Q 008183 416 SGVGRWDEVAEVRKVMKDRRV 436 (575)
Q Consensus 416 ~~~g~~~~a~~~~~~m~~~~~ 436 (575)
.++.+.++|.++.......|.
T Consensus 450 LrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 450 LRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHccccHHHHHHHHHhhhccc
Confidence 788999999999888876664
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.51 E-value=7.2e-05 Score=76.06 Aligned_cols=215 Identities=15% Similarity=0.145 Sum_probs=136.5
Q ss_pred HhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHH
Q 008183 177 AQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256 (575)
Q Consensus 177 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 256 (575)
.+.|+++.|+.-|-+... ....+.+......+.+|..+++.+.... .-..-|.-+.+-|+..|+++.|+
T Consensus 717 ~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae 785 (1636)
T KOG3616|consen 717 EQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAE 785 (1636)
T ss_pred HHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHH
Confidence 344555555555444321 2233445555677777777777776553 23344666778888888888888
Q ss_pred HHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC
Q 008183 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLE 336 (575)
Q Consensus 257 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 336 (575)
++|.+ ...++--|..|.++|+|+.|.++-.+. .|.......|..-..-.-..|++.+|.+++-.+ | .
T Consensus 786 ~lf~e------~~~~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti----~-~ 852 (1636)
T KOG3616|consen 786 ELFTE------ADLFKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITI----G-E 852 (1636)
T ss_pred HHHHh------cchhHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEc----c-C
Confidence 88876 234566677888888888888775443 334444455555555566678888888776544 1 3
Q ss_pred CChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 008183 337 PGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLS 416 (575)
Q Consensus 337 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 416 (575)
|+ .-|.+|-+.|..++..++.++-.-..-..|...+..-+-..|+++.|+.-|-++-+ |..-+++|.
T Consensus 853 p~-----~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d--------~kaavnmyk 919 (1636)
T KOG3616|consen 853 PD-----KAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD--------FKAAVNMYK 919 (1636)
T ss_pred ch-----HHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh--------HHHHHHHhh
Confidence 44 24667888888888888877652111244556666677777888888776655432 445667777
Q ss_pred hCCCchHHHHHH
Q 008183 417 GVGRWDEVAEVR 428 (575)
Q Consensus 417 ~~g~~~~a~~~~ 428 (575)
..+.|++|.++-
T Consensus 920 ~s~lw~dayria 931 (1636)
T KOG3616|consen 920 ASELWEDAYRIA 931 (1636)
T ss_pred hhhhHHHHHHHH
Confidence 777777777664
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.8e-05 Score=69.99 Aligned_cols=82 Identities=15% Similarity=0.129 Sum_probs=64.4
Q ss_pred HHhccCChHHHHHHHHhCC----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchH
Q 008183 348 AMGRAGRLEDAERIAMAMP----FEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDE 423 (575)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 423 (575)
.+-+.|+++.|.+.+..|| -..|++|...+.-. -..+++..+.+-+.-+++++|-.+.+|..++-.|++..-++-
T Consensus 250 Ieyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~l 328 (459)
T KOG4340|consen 250 IEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDL 328 (459)
T ss_pred hhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhH
Confidence 4567899999999999995 33577777665432 234667777788888889999888899999999999999999
Q ss_pred HHHHHHH
Q 008183 424 VAEVRKV 430 (575)
Q Consensus 424 a~~~~~~ 430 (575)
|..++.+
T Consensus 329 AADvLAE 335 (459)
T KOG4340|consen 329 AADVLAE 335 (459)
T ss_pred HHHHHhh
Confidence 9888754
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.0006 Score=77.46 Aligned_cols=258 Identities=10% Similarity=0.048 Sum_probs=120.9
Q ss_pred HHHHhCCChHHHHHHHHhcCC----CCc----chHHHHHHHHHhCCCchHHHHHHHHhHHCCC---CcC--HHHHHHHHH
Q 008183 143 HFYSRFRSPDNAKKVFDEIRE----RDV----VCYGAMIVGFAQNSRLVDSLSVFADMRSSDV---GST--MYCVSGALR 209 (575)
Q Consensus 143 ~~~~~~g~~~~A~~~f~~m~~----~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~~ll~ 209 (575)
..+...|++++|...+++..+ .+. ..++.+...+...|++++|...+.+.....- .+. ..+...+..
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 344556677777666665422 111 2234444555666777777666666543110 011 123334444
Q ss_pred HHHhcccHHHHHHHHHHHHHh----CCCC---chhHHHHHHHHHHccCCHHHHHHHHhhhCC-----CC--ChhhHHHHH
Q 008183 210 AAAELAAMEQCRVIHGHAVVS----GLDR---NVIVGTGLIDGYGKAGIVSDARRVFDENLS-----VL--NSIAWNAMM 275 (575)
Q Consensus 210 ~~~~~~~~~~a~~~~~~~~~~----g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~--~~~~~~~li 275 (575)
.+...|+++.|...+.+.... |... ....+..+...+...|++++|...+.+.+. .+ ....+..+.
T Consensus 540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 619 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLA 619 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHH
Confidence 555666777666666554432 2110 122233444455556677666666655322 01 112233344
Q ss_pred HHHHHcCChHHHHHHHHHHHHc----CCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC---hhHHHHHH
Q 008183 276 AGYAQQGDQSTVLELFHLLEMR----GFAPDEYSF--LAVLTALCNAGLAGESEKWIERMKVRYKLEPG---LEHYTCLI 346 (575)
Q Consensus 276 ~~~~~~g~~~~A~~l~~~m~~~----g~~p~~~t~--~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li 346 (575)
..+...|++++|...+.+.... +..+..... ...+..+...|+.+.|..++.... ....... ...+..+.
T Consensus 620 ~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~-~~~~~~~~~~~~~~~~~a 698 (903)
T PRK04841 620 KISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAP-KPEFANNHFLQGQWRNIA 698 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcC-CCCCccchhHHHHHHHHH
Confidence 4555666666666666655332 100000000 001122334566666666655431 1000000 01123444
Q ss_pred HHHhccCChHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 008183 347 SAMGRAGRLEDAERIAMAM-------PFEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDIN 401 (575)
Q Consensus 347 ~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 401 (575)
.++...|+.++|...+++. +..++ ..+...+..++...|+.++|...+.++++..
T Consensus 699 ~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 699 RAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 5556666666666665544 11111 2344445555666666666666666666544
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00051 Score=70.81 Aligned_cols=93 Identities=12% Similarity=0.097 Sum_probs=65.2
Q ss_pred HHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCC
Q 008183 343 TCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGR 420 (575)
Q Consensus 343 ~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 420 (575)
....+.+.+.+..++|...+.+. ++.| ....|.-....+...|..++|.+.|...+.++|+++.+..++..++.+.|+
T Consensus 654 llaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~ 733 (799)
T KOG4162|consen 654 LLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGS 733 (799)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC
Confidence 34445556666666666555544 3333 244555555566677888888888888888999888888899999999988
Q ss_pred chHHHH--HHHHHhhCC
Q 008183 421 WDEVAE--VRKVMKDRR 435 (575)
Q Consensus 421 ~~~a~~--~~~~m~~~~ 435 (575)
-.-|.. ++..+.+.+
T Consensus 734 ~~la~~~~~L~dalr~d 750 (799)
T KOG4162|consen 734 PRLAEKRSLLSDALRLD 750 (799)
T ss_pred cchHHHHHHHHHHHhhC
Confidence 777776 777776644
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.00029 Score=79.98 Aligned_cols=299 Identities=7% Similarity=-0.044 Sum_probs=191.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHhcCC----CC---c-----chHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCH---
Q 008183 137 CGSALVHFYSRFRSPDNAKKVFDEIRE----RD---V-----VCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTM--- 201 (575)
Q Consensus 137 ~~~~li~~~~~~g~~~~A~~~f~~m~~----~~---~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--- 201 (575)
........+...|++++|...++.... .+ . .....+...+...|++++|...+++....-...+.
T Consensus 411 l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 490 (903)
T PRK04841 411 LVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSR 490 (903)
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHH
Confidence 334455566678999999888876532 11 1 11122334456889999999999987663111222
Q ss_pred -HHHHHHHHHHHhcccHHHHHHHHHHHHHhCC---CC--chhHHHHHHHHHHccCCHHHHHHHHhhhCC------CC---
Q 008183 202 -YCVSGALRAAAELAAMEQCRVIHGHAVVSGL---DR--NVIVGTGLIDGYGKAGIVSDARRVFDENLS------VL--- 266 (575)
Q Consensus 202 -~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~---~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~--- 266 (575)
...+.+...+...|+++.|...+.......- .+ .......+...+...|++++|...+++.+. .+
T Consensus 491 ~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~ 570 (903)
T PRK04841 491 IVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLP 570 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccccc
Confidence 2334455566778999999998888765321 11 123455667788899999999998876433 11
Q ss_pred -ChhhHHHHHHHHHHcCChHHHHHHHHHHHHc--CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhH
Q 008183 267 -NSIAWNAMMAGYAQQGDQSTVLELFHLLEMR--GFAPD--EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEH 341 (575)
Q Consensus 267 -~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 341 (575)
....+..+...+...|++++|...+.+.... ...+. ..++..+.......|+.+.|...+.....-..-......
T Consensus 571 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~ 650 (903)
T PRK04841 571 MHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSD 650 (903)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHh
Confidence 1223445555677789999999999887543 11122 334444556677899999999988877332111111111
Q ss_pred H-----HHHHHHHhccCChHHHHHHHHhCCC-C-CCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhcC----C--CC
Q 008183 342 Y-----TCLISAMGRAGRLEDAERIAMAMPF-E-PDA----AVWRALLSFSAIHGKADMASKMGKRLIDIN----P--YD 404 (575)
Q Consensus 342 ~-----~~li~~~~~~g~~~~A~~~~~~m~~-~-p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----p--~~ 404 (575)
+ ...+..+...|+.+.|..++..... . ... ..+..+..++...|+.++|...++++.+.. . ..
T Consensus 651 ~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~ 730 (903)
T PRK04841 651 WIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDL 730 (903)
T ss_pred HhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHH
Confidence 1 1122445568999999999877621 1 111 124456677888999999999999988642 1 12
Q ss_pred chhHHHHHHHHHhCCCchHHHHHHHHHhhCC
Q 008183 405 DSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435 (575)
Q Consensus 405 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 435 (575)
..++..+..+|...|+.++|...+.+..+..
T Consensus 731 a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 731 NRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 2366778889999999999999999887543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.4e-05 Score=72.15 Aligned_cols=182 Identities=13% Similarity=0.001 Sum_probs=115.0
Q ss_pred chhHHHHHHHHHHccCCHHHHHHHHhhhCC-CCC-h---hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHH
Q 008183 235 NVIVGTGLIDGYGKAGIVSDARRVFDENLS-VLN-S---IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDE--YSFL 307 (575)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~-~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~ 307 (575)
....+..+...|.+.|++++|...|++.+. .|+ . .+|..+..+|.+.|++++|+..|+++.+....... .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 345666677777788888888888876333 222 1 35666777777888888888888887765322111 1333
Q ss_pred HHHHHHHhc--------CCHHHHHHHHHHHHHhcCCCCCh-hHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHH
Q 008183 308 AVLTALCNA--------GLAGESEKWIERMKVRYKLEPGL-EHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378 (575)
Q Consensus 308 ~ll~a~~~~--------g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll 378 (575)
.+..++.+. |+.+.|.+.++.+... .|+. ..+..+..... ..... ......+.
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~~a 173 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNRL-----------AGKELYVA 173 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHHH-----------HHHHHHHH
Confidence 344444433 5667777777766433 3442 22222111100 00000 00112455
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCC---chhHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 379 SFSAIHGKADMASKMGKRLIDINPYD---DSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 379 ~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
..+...|++++|...++++++..|.+ +.++..++.+|.+.|++++|..+++.+..+
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66888999999999999999886654 468889999999999999999999988764
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.0018 Score=60.80 Aligned_cols=387 Identities=12% Similarity=0.048 Sum_probs=206.9
Q ss_pred HHHHHHHHhHcCCChHHHHHHHccCC---CCChhhHHHHHHHHhcCchHHHHHHHHhhCCCCCcCCChhhHHHHH-HHHh
Q 008183 35 IYNNLITNYSKSNLLSYSLRLFNHIP---SPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLF-KTCA 110 (575)
Q Consensus 35 ~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~a~~~~~~m~~~~~~~~~p~~~t~~~ll-~~~~ 110 (575)
+.-.+...|..-|++++|..++.-+. .++...|-.|.-.+--.| .|.+....+. -.|+......++ ...-
T Consensus 59 ~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg----~Y~eA~~~~~--ka~k~pL~~RLlfhlah 132 (557)
T KOG3785|consen 59 LQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLG----QYIEAKSIAE--KAPKTPLCIRLLFHLAH 132 (557)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHH----HHHHHHHHHh--hCCCChHHHHHHHHHHH
Confidence 33334445556677777777766543 233333333322222112 2222221110 123333333333 2333
Q ss_pred hchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCC--CCcchHHHH-HHHHHhCCCchHHHH
Q 008183 111 SLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE--RDVVCYGAM-IVGFAQNSRLVDSLS 187 (575)
Q Consensus 111 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~l-i~~~~~~g~~~~A~~ 187 (575)
+.+ +-+.-..+|+.+...- .-.-+|..+.--.-.+.+|.+++..... |+-...|.- .-+|.+..-++-+.+
T Consensus 133 kln-dEk~~~~fh~~LqD~~-----EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqe 206 (557)
T KOG3785|consen 133 KLN-DEKRILTFHSSLQDTL-----EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQE 206 (557)
T ss_pred HhC-cHHHHHHHHHHHhhhH-----HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHH
Confidence 344 5555555555543221 1112233332223357788888887765 444445543 345667777777777
Q ss_pred HHHHhHHCCCCcCHHHHHHHHHHHHh--c--ccHHHH--HH----------HHHHHHHhCC------------CC-----
Q 008183 188 VFADMRSSDVGSTMYCVSGALRAAAE--L--AAMEQC--RV----------IHGHAVVSGL------------DR----- 234 (575)
Q Consensus 188 ~~~~m~~~g~~p~~~t~~~ll~~~~~--~--~~~~~a--~~----------~~~~~~~~g~------------~~----- 234 (575)
++..-... -||. |+..=+.+|.. . |+..+. .. .-+.+.++++ -|
T Consensus 207 vl~vYL~q--~pdS-tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~ 283 (557)
T KOG3785|consen 207 VLKVYLRQ--FPDS-TIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH 283 (557)
T ss_pred HHHHHHHh--CCCc-HHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh
Confidence 77766553 3443 22222333322 1 111110 00 1111222110 00
Q ss_pred chhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCC-------hHHHHHHHHHHHHcCCCCCHH-HH
Q 008183 235 NVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGD-------QSTVLELFHLLEMRGFAPDEY-SF 306 (575)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~l~~~m~~~g~~p~~~-t~ 306 (575)
=+...-.|+--|.+.+++.+|..+.++ +.+.+..-|-.-...++..|+ ..-|.+.|+..-..+..-|.. --
T Consensus 284 IPEARlNL~iYyL~q~dVqeA~~L~Kd-l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGR 362 (557)
T KOG3785|consen 284 IPEARLNLIIYYLNQNDVQEAISLCKD-LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGR 362 (557)
T ss_pred ChHhhhhheeeecccccHHHHHHHHhh-cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccch
Confidence 112233455568899999999999999 776555444322222333332 445566665554444433322 12
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHH-HHHHH
Q 008183 307 LAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMP--FEPDAAVWRALL-SFSAI 383 (575)
Q Consensus 307 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll-~~~~~ 383 (575)
-++.+++.-...+++..-++..+ +.+=..-|...+ .+..+++..|.+.+|+++|-.+. .-.|..+|.+++ ..|..
T Consensus 363 QsmAs~fFL~~qFddVl~YlnSi-~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~ 440 (557)
T KOG3785|consen 363 QSMASYFFLSFQFDDVLTYLNSI-ESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIR 440 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHh
Confidence 23444555567789999999888 444344444444 47889999999999999998883 224677777766 45667
Q ss_pred cCChHHHHHHHHHHHhcC-CCCc-hhHHHHHHHHHhCCCchHHHHHHHHHhhCCCccCCceeEE
Q 008183 384 HGKADMASKMGKRLIDIN-PYDD-SAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWI 445 (575)
Q Consensus 384 ~g~~~~a~~~~~~~~~~~-p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~ 445 (575)
.++++.|..++ ++.+ |.+. .....+.+-|.+++.+=-|.+.|+.+...+.. |. .|-
T Consensus 441 nkkP~lAW~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~--pE-nWe 498 (557)
T KOG3785|consen 441 NKKPQLAWDMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT--PE-NWE 498 (557)
T ss_pred cCCchHHHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC--cc-ccC
Confidence 78888887664 4444 3332 24455667889999999999999988765543 32 575
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.4e-05 Score=78.71 Aligned_cols=190 Identities=14% Similarity=0.115 Sum_probs=155.7
Q ss_pred CCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008183 231 GLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL 310 (575)
Q Consensus 231 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 310 (575)
+++|-...-..+...+.+.|-...|..+|++ ...|...|-+|...|+..+|..+..+-.+ -+||..-|..+.
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Er------lemw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LG 464 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFER------LEMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLG 464 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHh------HHHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhh
Confidence 4456666777889999999999999999998 55788899999999999999999988877 478999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChH
Q 008183 311 TALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKAD 388 (575)
Q Consensus 311 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~ 388 (575)
+..-...-+++|.++.+....+ .-..+.....+.++++++.+.|+.- .+.| ...+|-.+..+..+.++++
T Consensus 465 Dv~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhH
Confidence 8888888889999998866333 1112222233478899998888764 5555 4778888888888999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCCC
Q 008183 389 MASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436 (575)
Q Consensus 389 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 436 (575)
.|.+.|.+.+.++|++..+|+.+..+|.+.|+-.+|...+++..+-+.
T Consensus 537 ~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~ 584 (777)
T KOG1128|consen 537 AAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY 584 (777)
T ss_pred HHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 999999999999999999999999999999999999999988877663
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.39 E-value=9.7e-05 Score=80.46 Aligned_cols=222 Identities=15% Similarity=0.083 Sum_probs=176.7
Q ss_pred CCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhh-CCC---CchhHHHHHHHHHHhCCChHHHHHHHHhcCCC-C-cchH
Q 008183 96 LPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKL-SLH---DKPFCGSALVHFYSRFRSPDNAKKVFDEIRER-D-VVCY 169 (575)
Q Consensus 96 ~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~-g~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-~-~~~~ 169 (575)
+.+...|..-|.-....+ +++.|+.+.+++++. ++. .-..+|.+++++---.|.-+...++|++..+- | ...|
T Consensus 1455 PNSSi~WI~YMaf~Lels-EiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~ 1533 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELS-EIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVH 1533 (1710)
T ss_pred CCcchHHHHHHHHHhhhh-hhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHH
Confidence 345567888888888888 999999999998875 221 22357889998888889889999999998773 3 3468
Q ss_pred HHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC--chhHHHHHHHHHH
Q 008183 170 GAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDR--NVIVGTGLIDGYG 247 (575)
Q Consensus 170 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~~~ 247 (575)
..|...|.+.+.+++|-++|+.|.+. ..-....|...+..+.+..+-+.|..++..+++.- +. ......-.+.+-.
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l-Pk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSL-PKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc-chhhhHHHHHHHHHHHh
Confidence 89999999999999999999999874 34566788888999999999999999999888752 33 4566677788889
Q ss_pred ccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHH
Q 008183 248 KAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDE--YSFLAVLTALCNAGLAG 320 (575)
Q Consensus 248 ~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~ 320 (575)
++|+.+.++.+|+..+. +.-...|+..|..=.++|+.+.+..+|++....++.|-. ..|.-.|..=...|+-+
T Consensus 1612 k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 99999999999998554 456788999999999999999999999999998887764 34444554434444433
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.0013 Score=68.30 Aligned_cols=349 Identities=12% Similarity=0.070 Sum_probs=215.7
Q ss_pred CcccHHHHHHH--HhHcCCChHHHHHHHccCCCCChhhHHHHHHHHhcCch---HHH------------HHHHHhhCCCC
Q 008183 31 ADRSIYNNLIT--NYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLN------------IFLSMLRHPTL 93 (575)
Q Consensus 31 ~~~~~~~~li~--~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~---a~~------------~~~~m~~~~~~ 93 (575)
-|+.+-.++++ .|.-.|+++.|.+-.+-++ +-..|..|.+.|.+..+ |.- .+++..+.+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~-- 799 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNG-- 799 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCC--
Confidence 67788888875 6788899999988877774 45679999888877655 333 333333332
Q ss_pred CcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCC-CCcchHHHH
Q 008183 94 SFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE-RDVVCYGAM 172 (575)
Q Consensus 94 ~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-~~~~~~~~l 172 (575)
+ .+=.-+.-.....| .+++|+.++.+..+.. .|=..|-..|.+++|.++-+.-.. .=..||...
T Consensus 800 ----~-e~eakvAvLAieLg-MlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~y 864 (1416)
T KOG3617|consen 800 ----E-EDEAKVAVLAIELG-MLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNY 864 (1416)
T ss_pred ----c-chhhHHHHHHHHHh-hHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHH
Confidence 2 12122222334667 9999999999887654 345678889999999988754322 122356666
Q ss_pred HHHHHhCCCchHHHHHHHHhH----------HCCC---------CcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q 008183 173 IVGFAQNSRLVDSLSVFADMR----------SSDV---------GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLD 233 (575)
Q Consensus 173 i~~~~~~g~~~~A~~~~~~m~----------~~g~---------~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 233 (575)
..-+-..++.+.|++.|++.. .... ..|...|.-...-....|+.+.|..+|.....
T Consensus 865 A~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---- 940 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---- 940 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----
Confidence 666667788888888887642 1110 11222333333333445677777766665543
Q ss_pred CchhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008183 234 RNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313 (575)
Q Consensus 234 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 313 (575)
|-+++...|-.|+.++|-++-++ ..|......+...|-..|++.+|...|.+.+ +|...|+.|
T Consensus 941 -----~fs~VrI~C~qGk~~kAa~iA~e---sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlc 1003 (1416)
T KOG3617|consen 941 -----YFSMVRIKCIQGKTDKAARIAEE---SGDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLC 1003 (1416)
T ss_pred -----hhhheeeEeeccCchHHHHHHHh---cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHH
Confidence 45566777778888888888766 4567777788889999999999999987754 333444433
Q ss_pred HhcC---------------CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHH-HhC----------CC
Q 008183 314 CNAG---------------LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIA-MAM----------PF 367 (575)
Q Consensus 314 ~~~g---------------~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~-~~m----------~~ 367 (575)
-..+ +.-.|-++|++. |.. ...-+..|-++|.+.+|+++- +.- .+
T Consensus 1004 KEnd~~d~L~nlal~s~~~d~v~aArYyEe~----g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DL 1074 (1416)
T KOG3617|consen 1004 KENDMKDRLANLALMSGGSDLVSAARYYEEL----GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDL 1074 (1416)
T ss_pred HhcCHHHHHHHHHhhcCchhHHHHHHHHHHc----chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhc
Confidence 3222 333344444432 211 123345788899988888762 211 12
Q ss_pred --CCCHHHHHHHHHHHHHcCChHHHHHHHHHHH---------------------h-cCCC------C---chhHHHHHHH
Q 008183 368 --EPDAAVWRALLSFSAIHGKADMASKMGKRLI---------------------D-INPY------D---DSAYVIVANV 414 (575)
Q Consensus 368 --~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---------------------~-~~p~------~---~~~~~~l~~~ 414 (575)
..|+...+.-..-+..+.++++|..++-... + +.|. . ......+...
T Consensus 1075 d~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~ 1154 (1416)
T KOG3617|consen 1075 DAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAEL 1154 (1416)
T ss_pred CCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHH
Confidence 2356555555566666677777765543322 1 1111 1 1245568888
Q ss_pred HHhCCCchHHHHHH
Q 008183 415 LSGVGRWDEVAEVR 428 (575)
Q Consensus 415 ~~~~g~~~~a~~~~ 428 (575)
|.++|.+..|-+-|
T Consensus 1155 c~qQG~Yh~AtKKf 1168 (1416)
T KOG3617|consen 1155 CLQQGAYHAATKKF 1168 (1416)
T ss_pred HHhccchHHHHHHH
Confidence 99999888776654
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00068 Score=71.71 Aligned_cols=363 Identities=16% Similarity=0.158 Sum_probs=223.8
Q ss_pred CCCCCCccHHHHHHHHHhhCCCcccHHHHHHHHhHcCCChHHHHHHHccCCCCChhhHHHHHHHHhcCch---H------
Q 008183 10 QPQNTSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---S------ 80 (575)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~---a------ 80 (575)
.+.+++.......+..+..|..++.++|+|...|...++-.+- .+.+-+ .--+..+.-||...+ |
T Consensus 849 EkRNRLklLlp~LE~~i~eG~~d~a~hnAlaKIyIDSNNnPE~--fLkeN~----yYDs~vVGkYCEKRDP~lA~vaYer 922 (1666)
T KOG0985|consen 849 EKRNRLKLLLPWLESLIQEGSQDPATHNALAKIYIDSNNNPER--FLKENP----YYDSKVVGKYCEKRDPHLACVAYER 922 (1666)
T ss_pred HhhhhHHHHHHHHHHHHhccCcchHHHhhhhheeecCCCChHH--hcccCC----cchhhHHhhhhcccCCceEEEeecc
Confidence 3445566666777777888888999999999999887664432 111111 111112222332222 1
Q ss_pred -------------HHHHHHHhhCCCCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCC--CchhHHHHHHHHH
Q 008183 81 -------------LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH--DKPFCGSALVHFY 145 (575)
Q Consensus 81 -------------~~~~~~m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~li~~~ 145 (575)
-.+|+...+.-. .+.|...|..++.- .-..-+++.++++..+++ .|+.-.+..+.++
T Consensus 923 GqcD~elI~vcNeNSlfK~~aRYlv--~R~D~~LW~~VL~e------~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAf 994 (1666)
T KOG0985|consen 923 GQCDLELINVCNENSLFKSQARYLV--ERSDPDLWAKVLNE------ENPYRRQLIDQVVQTALPETQDPEEVSVTVKAF 994 (1666)
T ss_pred cCCcHHHHHhcCchhHHHHHHHHHH--hccChHHHHHHHhc------cChHHHHHHHHHHHhcCCccCChHHHHHHHHHH
Confidence 112222111000 12244455555422 222335667777777653 3556667778888
Q ss_pred HhCCChHHHHHHHHhcC-CCCcch-----HHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHH
Q 008183 146 SRFRSPDNAKKVFDEIR-ERDVVC-----YGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQ 219 (575)
Q Consensus 146 ~~~g~~~~A~~~f~~m~-~~~~~~-----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 219 (575)
...+-..+-.++++.+. ++++.+ -|.||-.-. .-+..+..+..+++..-+ .|+ +...+...+-+++
T Consensus 995 MtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAi-kad~trVm~YI~rLdnyD-a~~------ia~iai~~~LyEE 1066 (1666)
T KOG0985|consen 995 MTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAI-KADRTRVMEYINRLDNYD-APD------IAEIAIENQLYEE 1066 (1666)
T ss_pred HhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHh-hcChHHHHHHHHHhccCC-chh------HHHHHhhhhHHHH
Confidence 88888888888888875 343333 334443333 345566777777764432 233 2344556677788
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 008183 220 CRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGF 299 (575)
Q Consensus 220 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 299 (575)
|..+|+.. ..+....+.||+ .-+.+|.|.+.-++ ..+| ..|+.+..+-.+.|...+|++-|-+.
T Consensus 1067 AF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~-~n~p--~vWsqlakAQL~~~~v~dAieSyika----- 1130 (1666)
T KOG0985|consen 1067 AFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAER-CNEP--AVWSQLAKAQLQGGLVKDAIESYIKA----- 1130 (1666)
T ss_pred HHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHh-hCCh--HHHHHHHHHHHhcCchHHHHHHHHhc-----
Confidence 88887643 444555555554 35678888888777 5554 46888999999999999998877542
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHH
Q 008183 300 APDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379 (575)
Q Consensus 300 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~ 379 (575)
-|...|..++..+.+.|.+++-.+++. |..+..-+|.+. +.||-+|++.+++.+-++++. .||..-...+..
T Consensus 1131 -dDps~y~eVi~~a~~~~~~edLv~yL~-MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGd 1202 (1666)
T KOG0985|consen 1131 -DDPSNYLEVIDVASRTGKYEDLVKYLL-MARKKVREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGD 1202 (1666)
T ss_pred -CCcHHHHHHHHHHHhcCcHHHHHHHHH-HHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhH
Confidence 367788899999999999999999887 545545566554 478889999999988877763 567766777777
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHH
Q 008183 380 FSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAE 426 (575)
Q Consensus 380 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 426 (575)
-|...|.++.|.-++... +.|.-|...+...|++..|..
T Consensus 1203 rcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AVD 1241 (1666)
T KOG0985|consen 1203 RCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAVD 1241 (1666)
T ss_pred HHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHH
Confidence 777777777777666543 233444444444454444443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.0003 Score=68.19 Aligned_cols=228 Identities=14% Similarity=0.051 Sum_probs=112.7
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHH-HHHHHHHHHHhcc-cHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 008183 168 CYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMY-CVSGALRAAAELA-AMEQCRVIHGHAVVSGLDRNVIVGTGLIDG 245 (575)
Q Consensus 168 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 245 (575)
+++.+-..+...++.++|+.++.++.+. .|+.. .|..--.++...+ .++++...+..+.+.. +.+..+|+....+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHH
Confidence 3444455555566667777777666552 34433 2333223333334 3455555555555443 3333344443333
Q ss_pred HHccCCH--HHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 008183 246 YGKAGIV--SDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGE 321 (575)
Q Consensus 246 ~~~~g~~--~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 321 (575)
+.+.|+. +++.++++.++. +.|..+|+...-.+...|+++++++.+.++.+.+.. |...|+.....+.+.+.
T Consensus 116 l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~--- 191 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPL--- 191 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccc---
Confidence 3333331 334444443222 344445555544455555555555555555444332 22333322222221100
Q ss_pred HHHHHHHHHHhcCCCCChhHHHHHHHHHhccCC----hHHHHHHHHh-CCCCC-CHHHHHHHHHHHHHc----CChHHHH
Q 008183 322 SEKWIERMKVRYKLEPGLEHYTCLISAMGRAGR----LEDAERIAMA-MPFEP-DAAVWRALLSFSAIH----GKADMAS 391 (575)
Q Consensus 322 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~----~~~A~~~~~~-m~~~p-~~~~~~~ll~~~~~~----g~~~~a~ 391 (575)
.|. .+++.+...+ +...| |...|+.+...+... ++..+|.
T Consensus 192 ------------------------------l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~ 241 (320)
T PLN02789 192 ------------------------------LGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVS 241 (320)
T ss_pred ------------------------------cccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHH
Confidence 011 1234444422 23445 466676666666652 3345577
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHhCC------------------CchHHHHHHHHHh
Q 008183 392 KMGKRLIDINPYDDSAYVIVANVLSGVG------------------RWDEVAEVRKVMK 432 (575)
Q Consensus 392 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~a~~~~~~m~ 432 (575)
+.+.+..+.+|.++.+...|++.|+... ..++|.++++.+.
T Consensus 242 ~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 242 SVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 7777777777777777778888887532 2356888888774
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.8e-05 Score=79.32 Aligned_cols=211 Identities=17% Similarity=0.099 Sum_probs=166.6
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC-CCChhhHHHHHHHHHHcCCh
Q 008183 206 GALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS-VLNSIAWNAMMAGYAQQGDQ 284 (575)
Q Consensus 206 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~li~~~~~~g~~ 284 (575)
.+...+...|-...|..+++.+. .+.-.|.+|+..|+-.+|..+..+-++ +||...|-.+.....+..-+
T Consensus 403 ~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~y 473 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLY 473 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHH
Confidence 34555666777777877777553 455688999999999999999877566 77888888888888888889
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHH
Q 008183 285 STVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAM 363 (575)
Q Consensus 285 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~ 363 (575)
++|.++++..... .-..+.......++++++.+.|+.-. .+.|- ..+|-.+--+..+.++++.|.+.|.
T Consensus 474 EkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl---~~nplq~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 474 EKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSL---EINPLQLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred HHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHh---hcCccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence 9999999875432 11111112234688999999888442 34443 5678888888889999999999998
Q ss_pred hC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCC
Q 008183 364 AM-PFEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435 (575)
Q Consensus 364 ~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 435 (575)
.- ...|| ...||.+-.+|.+.++-.+|...++++.+.+-.+...|...+-...+-|.|++|.+.+.++.+..
T Consensus 544 rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 544 RCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 76 67886 88999999999999999999999999999887777888888889999999999999999887543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.7e-05 Score=68.58 Aligned_cols=117 Identities=11% Similarity=0.092 Sum_probs=90.7
Q ss_pred cCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HHcCC--hHH
Q 008183 316 AGLAGESEKWIERMKVRYKLEP-GLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFS-AIHGK--ADM 389 (575)
Q Consensus 316 ~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~-~~~g~--~~~ 389 (575)
.++.+++...++.... ..| +...|..+...|...|++++|...|++. .+.| +...+..+..++ ...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~---~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIR---ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 4555666666655432 234 4788888888888999999998888877 4556 477777777764 56666 589
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCC
Q 008183 390 ASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435 (575)
Q Consensus 390 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 435 (575)
|.++++++++.+|.++.++..+...+...|++++|...++++.+..
T Consensus 129 A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 129 TREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 9999999999999998899999999999999999999999887653
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00011 Score=78.37 Aligned_cols=140 Identities=11% Similarity=0.015 Sum_probs=107.7
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHH
Q 008183 266 LNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDE-YSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYT 343 (575)
Q Consensus 266 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~ 343 (575)
.++..+-.|.....+.|+.++|+.+++...+. .||. .....+...+.+.+.+++|....++.. ...|+ .....
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l---~~~p~~~~~~~ 158 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYF---SGGSSSAREIL 158 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHh---hcCCCCHHHHH
Confidence 34667777888888899999999999888874 5554 556677788888899999998888774 34566 56677
Q ss_pred HHHHHHhccCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHH
Q 008183 344 CLISAMGRAGRLEDAERIAMAMP-FEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVI 410 (575)
Q Consensus 344 ~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 410 (575)
.+..++.+.|++++|..+|++.- -.|+ ..+|.++..++...|+.++|...|+++++...+-...|+.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTR 227 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHH
Confidence 77888888999999999998882 3444 7888888888888999999999999988866444344443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00077 Score=63.16 Aligned_cols=106 Identities=10% Similarity=0.136 Sum_probs=60.0
Q ss_pred CcccHHHHHHHHhH-cCCChHHHHHHHccCCCC--ChhhHHHHHHHHhcCch--HHHHHHHHhhCCCCCcCCChhhHHHH
Q 008183 31 ADRSIYNNLITNYS-KSNLLSYSLRLFNHIPSP--NIVSWTALISAHSNSPL--SLNIFLSMLRHPTLSFLPNQRTLASL 105 (575)
Q Consensus 31 ~~~~~~~~li~~~~-~~g~~~~A~~~f~~m~~~--~~~~~~~li~~~~~~g~--a~~~~~~m~~~~~~~~~p~~~t~~~l 105 (575)
|++.+.+.|+--.+ |.++-++-..+-..+... |..+..++ .|.+..- |+++|...... .|+-...+.-
T Consensus 118 ~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsv--hYmR~HYQeAIdvYkrvL~d-----n~ey~alNVy 190 (557)
T KOG3785|consen 118 PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASV--HYMRMHYQEAIDVYKRVLQD-----NPEYIALNVY 190 (557)
T ss_pred CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHH--HHHHHHHHHHHHHHHHHHhc-----ChhhhhhHHH
Confidence 77777777765444 556666555555555421 22222221 1333322 99999998874 4777777777
Q ss_pred HHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 008183 106 FKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHF 144 (575)
Q Consensus 106 l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 144 (575)
+..|...-+-.+.+..++.--++. ++.++..-|....-
T Consensus 191 ~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn 228 (557)
T KOG3785|consen 191 MALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACN 228 (557)
T ss_pred HHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHH
Confidence 766654442566666666665554 34455555544433
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.5e-06 Score=53.68 Aligned_cols=34 Identities=24% Similarity=0.539 Sum_probs=31.8
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcC
Q 008183 167 VCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGST 200 (575)
Q Consensus 167 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 200 (575)
++||++|.+|++.|++++|.++|++|.+.|++||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 4799999999999999999999999999999997
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.7e-06 Score=53.39 Aligned_cols=35 Identities=31% Similarity=0.645 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH
Q 008183 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDE 303 (575)
Q Consensus 269 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 303 (575)
.+||+||.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999973
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00013 Score=68.27 Aligned_cols=181 Identities=14% Similarity=0.005 Sum_probs=125.8
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCch---hHHHHHHHHHHccCCHHHHHHHHhhhCC-CC-Chh---hH
Q 008183 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNV---IVGTGLIDGYGKAGIVSDARRVFDENLS-VL-NSI---AW 271 (575)
Q Consensus 200 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~-~~~---~~ 271 (575)
....+......+...|+++.|...++.+.+.. +.+. ..+..+..+|.+.|++++|...+++.+. .| +.. ++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 45677778888899999999999999998763 2222 4667788999999999999999998544 23 222 45
Q ss_pred HHHHHHHHHc--------CChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHH
Q 008183 272 NAMMAGYAQQ--------GDQSTVLELFHLLEMRGFAPDEY-SFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHY 342 (575)
Q Consensus 272 ~~li~~~~~~--------g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~ 342 (575)
..+..++.+. |+.++|.+.|+.+.+. .|+.. ....+... .. . .... . ...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~------~~~~-~--------~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---L------RNRL-A--------GKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---H------HHHH-H--------HHH
Confidence 5556666654 7889999999999875 33332 22211111 00 0 0001 0 112
Q ss_pred HHHHHHHhccCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 008183 343 TCLISAMGRAGRLEDAERIAMAM----PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINP 402 (575)
Q Consensus 343 ~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 402 (575)
..+...|.+.|++++|...+++. +-.| ....|..+..++...|+.++|...++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 25566788999999999888876 2233 367888999999999999999998888766544
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0013 Score=65.15 Aligned_cols=370 Identities=15% Similarity=0.101 Sum_probs=227.5
Q ss_pred HhHcCCChHHHHHHHccCC---CCChhhHHHHHHHHhcCch---HHHHHHHHhhCCCCCcCCCh-hhHHHHHHHHhhchh
Q 008183 42 NYSKSNLLSYSLRLFNHIP---SPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQ-RTLASLFKTCASLSH 114 (575)
Q Consensus 42 ~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~---a~~~~~~m~~~~~~~~~p~~-~t~~~ll~~~~~~~~ 114 (575)
..+..|+++.|...|-+.. ++|-+.|..-..+|+..|+ |++=-.+-++ ..|+- -.|+..-.++...|
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~-----l~p~w~kgy~r~Gaa~~~lg- 84 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR-----LNPDWAKGYSRKGAALFGLG- 84 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh-----cCCchhhHHHHhHHHHHhcc-
Confidence 3456788999999886543 5688888888888888888 4443333333 55553 46777777777778
Q ss_pred hHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHh------cC-CC------CcchHHHHHHHHHhC--
Q 008183 115 AFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDE------IR-ER------DVVCYGAMIVGFAQN-- 179 (575)
Q Consensus 115 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~------m~-~~------~~~~~~~li~~~~~~-- 179 (575)
+++.|..-+..-++.. +.+...++.|.+++.-. ..+.+.|.. .. .| ....|..++..+-++
T Consensus 85 ~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~---~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~ 160 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKD-PSNKQLKTGLAQAYLED---YAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPT 160 (539)
T ss_pred cHHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHH---HHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcH
Confidence 8999988888877764 55667777777777111 011112211 00 00 112233343333221
Q ss_pred --------CCchHHHHHHHHh-----HHC-------CCCc------------CH----------HHHHHHHHHHHhcccH
Q 008183 180 --------SRLVDSLSVFADM-----RSS-------DVGS------------TM----------YCVSGALRAAAELAAM 217 (575)
Q Consensus 180 --------g~~~~A~~~~~~m-----~~~-------g~~p------------~~----------~t~~~ll~~~~~~~~~ 217 (575)
.+...|...+... ... +..| |. .-...+.++.-+..++
T Consensus 161 ~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f 240 (539)
T KOG0548|consen 161 SLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDF 240 (539)
T ss_pred hhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhH
Confidence 1111222111110 001 1111 00 1233456666667788
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCC-Ch-h-------hHHHHHHHHHHcCChHHHH
Q 008183 218 EQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL-NS-I-------AWNAMMAGYAQQGDQSTVL 288 (575)
Q Consensus 218 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~-~-------~~~~li~~~~~~g~~~~A~ 288 (575)
+.+.+-+...+... .+..-++..-.+|...|.+.+....-+..++.. .. . +...+..+|.+.++++.|+
T Consensus 241 ~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai 318 (539)
T KOG0548|consen 241 ETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAI 318 (539)
T ss_pred HHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHH
Confidence 88888888887764 566667777788888888777665554423311 11 1 1222344677778888899
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCh-hHHHHHHHHHhccCChHHHHHHHHhC-C
Q 008183 289 ELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGL-EHYTCLISAMGRAGRLEDAERIAMAM-P 366 (575)
Q Consensus 289 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m-~ 366 (575)
..|.+....-..|+..+ +....+++....... .-+.|+. .-...=...+.+.|++.+|.+.|.++ .
T Consensus 319 ~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~---a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk 386 (539)
T KOG0548|consen 319 KYYQKALTEHRTPDLLS---------KLKEAEKALKEAERK---AYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK 386 (539)
T ss_pred HHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHH---HhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 88888766545544322 222334444433322 2234442 11111245567889999999999887 3
Q ss_pred CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCC
Q 008183 367 FEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435 (575)
Q Consensus 367 ~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 435 (575)
..| |...|..-..+|.+.|.+..|+.-.+..++++|+....|.-=..++....+|+.|.+.|++-.+.+
T Consensus 387 r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 387 RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 456 588899999999999999999999999999999888888888888888889999999888776654
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.0025 Score=65.38 Aligned_cols=254 Identities=14% Similarity=0.198 Sum_probs=131.2
Q ss_pred hCCChHHHHHHHHhcCCCCcch--HHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHH
Q 008183 147 RFRSPDNAKKVFDEIRERDVVC--YGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIH 224 (575)
Q Consensus 147 ~~g~~~~A~~~f~~m~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 224 (575)
....+.+|..+++.+..+++.+ |..+...|+..|+++.|.++|.+.- .+.-.|..|.+.|.++.|.++-
T Consensus 744 ~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla 814 (1636)
T KOG3616|consen 744 GAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLA 814 (1636)
T ss_pred hhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHH
Confidence 3444555555555554433322 4445555555555555555554431 1333445555555555554443
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--
Q 008183 225 GHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPD-- 302 (575)
Q Consensus 225 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-- 302 (575)
.+. .|-+.....|-+-..-.-+.|++.+|+++|-. +..|+. -|..|-++|..+..+++..+- .|+
T Consensus 815 ~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyit-i~~p~~-----aiqmydk~~~~ddmirlv~k~-----h~d~l 881 (1636)
T KOG3616|consen 815 EEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYIT-IGEPDK-----AIQMYDKHGLDDDMIRLVEKH-----HGDHL 881 (1636)
T ss_pred HHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEE-ccCchH-----HHHHHHhhCcchHHHHHHHHh-----Chhhh
Confidence 222 22223333444444444455555555555555 444443 244555566655555554432 222
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCC-----HHHHHH-
Q 008183 303 EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPD-----AAVWRA- 376 (575)
Q Consensus 303 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~-----~~~~~~- 376 (575)
..|-..+..-+...|++..|...|-+. .-|.+-+.+|-..+.+++|.++-+.-+ ..| ...|.-
T Consensus 882 ~dt~~~f~~e~e~~g~lkaae~~flea----------~d~kaavnmyk~s~lw~dayriakteg-g~n~~k~v~flwaks 950 (1636)
T KOG3616|consen 882 HDTHKHFAKELEAEGDLKAAEEHFLEA----------GDFKAAVNMYKASELWEDAYRIAKTEG-GANAEKHVAFLWAKS 950 (1636)
T ss_pred hHHHHHHHHHHHhccChhHHHHHHHhh----------hhHHHHHHHhhhhhhHHHHHHHHhccc-cccHHHHHHHHHHHh
Confidence 234555666677778888888776544 135677788888888888888876653 112 222322
Q ss_pred -----HHHHHHHcCChHHHHHHHHH---------HHhcC--CCCchhHHHHHHHHHhCCCchHHHHHHHHHhh
Q 008183 377 -----LLSFSAIHGKADMASKMGKR---------LIDIN--PYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 377 -----ll~~~~~~g~~~~a~~~~~~---------~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 433 (575)
.+..+-++|-++.|...... +..+. ..-+.+..-+.-.+...|++++|-+.+-+..+
T Consensus 951 iggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaik 1023 (1636)
T KOG3616|consen 951 IGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIK 1023 (1636)
T ss_pred hCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhh
Confidence 12223344544444332211 11111 11233455566677888999999776655443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.0085 Score=60.33 Aligned_cols=332 Identities=13% Similarity=0.096 Sum_probs=179.6
Q ss_pred HHhcCch---HHHHHHHHhhCCCCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHH--HHHHHH-
Q 008183 73 AHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSA--LVHFYS- 146 (575)
Q Consensus 73 ~~~~~g~---a~~~~~~m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~~~- 146 (575)
-+..+|+ |+....++... .+-|...+..=+-++...+ .++.|..+.. ..+. ..+++. +=.+|+
T Consensus 21 ~~~~~~e~e~a~k~~~Kil~~----~pdd~~a~~cKvValIq~~-ky~~ALk~ik---k~~~---~~~~~~~~fEKAYc~ 89 (652)
T KOG2376|consen 21 RHGKNGEYEEAVKTANKILSI----VPDDEDAIRCKVVALIQLD-KYEDALKLIK---KNGA---LLVINSFFFEKAYCE 89 (652)
T ss_pred HhccchHHHHHHHHHHHHHhc----CCCcHhhHhhhHhhhhhhh-HHHHHHHHHH---hcch---hhhcchhhHHHHHHH
Confidence 3444555 88888887774 3335556666666777777 7777764332 2221 111222 234444
Q ss_pred -hCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCc-CHHHHHHHHHHHHhcccHHHHHHHH
Q 008183 147 -RFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS-TMYCVSGALRAAAELAAMEQCRVIH 224 (575)
Q Consensus 147 -~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~ 224 (575)
+.+..++|...++....-|..+...-...+.+.|++++|+++|+.+.+.+..- |...-..++.+-... ..
T Consensus 90 Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l-------~~- 161 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL-------QV- 161 (652)
T ss_pred HHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh-------hH-
Confidence 66888888888886555555466656667778888999999998886654332 122222222221111 01
Q ss_pred HHHHHhCCCCchhHHHH---HHHHHHccCCHHHHHHHHhhhCC-------CCCh-----hhH-----HHHHHHHHHcCCh
Q 008183 225 GHAVVSGLDRNVIVGTG---LIDGYGKAGIVSDARRVFDENLS-------VLNS-----IAW-----NAMMAGYAQQGDQ 284 (575)
Q Consensus 225 ~~~~~~g~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~~~~-------~~~~-----~~~-----~~li~~~~~~g~~ 284 (575)
..+......| ..+|.. ....+...|++.+|++++..++. ..|. ..= --|.-.+-..|+-
T Consensus 162 ~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 162 QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 0122222222 223333 34456778999999999887421 1111 111 1133346678999
Q ss_pred HHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcCCHHH--HHHHHHHHHHhc----------CCCCChhHHHHHHHH
Q 008183 285 STVLELFHLLEMRGFAPDEY----SFLAVLTALCNAGLAGE--SEKWIERMKVRY----------KLEPGLEHYTCLISA 348 (575)
Q Consensus 285 ~~A~~l~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~~--a~~~~~~m~~~~----------~~~p~~~~~~~li~~ 348 (575)
++|..++....+... +|.. .-|.|+ +.....++-. +...++...... .-.-...--++++.+
T Consensus 241 ~ea~~iy~~~i~~~~-~D~~~~Av~~NNLv-a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l 318 (652)
T KOG2376|consen 241 AEASSIYVDIIKRNP-ADEPSLAVAVNNLV-ALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLAL 318 (652)
T ss_pred HHHHHHHHHHHHhcC-CCchHHHHHhcchh-hhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888743 3432 222222 2222222111 111111110000 000011112334444
Q ss_pred HhccCChHHHHHHHHhCC-CCCCHHHHHHHHHHH-HHcC-ChHHHHHHHHHHHhcCCCC-chhHHHHHHHHHhCCCchHH
Q 008183 349 MGRAGRLEDAERIAMAMP-FEPDAAVWRALLSFS-AIHG-KADMASKMGKRLIDINPYD-DSAYVIVANVLSGVGRWDEV 424 (575)
Q Consensus 349 ~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~-~~~g-~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a 424 (575)
| .+..+.+.++-...+ ..|.. .+.+++..+ .... ....+.+++....+..|.+ ..+....+......|+++.|
T Consensus 319 ~--tnk~~q~r~~~a~lp~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A 395 (652)
T KOG2376|consen 319 F--TNKMDQVRELSASLPGMSPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVA 395 (652)
T ss_pred H--hhhHHHHHHHHHhCCccCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHH
Confidence 3 345566777666664 33443 344444433 3332 4777888888887888876 33566777888999999999
Q ss_pred HHHHH
Q 008183 425 AEVRK 429 (575)
Q Consensus 425 ~~~~~ 429 (575)
.+++.
T Consensus 396 ~~il~ 400 (652)
T KOG2376|consen 396 LEILS 400 (652)
T ss_pred HHHHH
Confidence 99998
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00023 Score=64.07 Aligned_cols=153 Identities=11% Similarity=0.072 Sum_probs=109.2
Q ss_pred HHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008183 243 IDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGES 322 (575)
Q Consensus 243 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 322 (575)
+..|.+.|+++......+..+.+.. .|...++.++++..++...+.. +.|...|..+...|...|++++|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~~---------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPLH---------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCccc---------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 4567777777776555544222111 1112556677777777766653 34677888888888899999999
Q ss_pred HHHHHHHHHhcCCCCC-hhHHHHHHHH-HhccCC--hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008183 323 EKWIERMKVRYKLEPG-LEHYTCLISA-MGRAGR--LEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKR 396 (575)
Q Consensus 323 ~~~~~~m~~~~~~~p~-~~~~~~li~~-~~~~g~--~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 396 (575)
...+++.. .+.|+ ...+..+..+ +...|+ .++|.+++++. ...| +..++..+...+...|++++|...+++
T Consensus 93 ~~a~~~Al---~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 93 LLAYRQAL---QLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHH---HhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99988773 34564 6777777775 467677 58999999887 4556 578888888999999999999999999
Q ss_pred HHhcCCCCchhH
Q 008183 397 LIDINPYDDSAY 408 (575)
Q Consensus 397 ~~~~~p~~~~~~ 408 (575)
+++..|++..-+
T Consensus 170 aL~l~~~~~~r~ 181 (198)
T PRK10370 170 VLDLNSPRVNRT 181 (198)
T ss_pred HHhhCCCCccHH
Confidence 999887766543
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.011 Score=60.19 Aligned_cols=407 Identities=9% Similarity=0.010 Sum_probs=213.0
Q ss_pred CCCccHHHHHHHHHhhCCCcccHHHHHHHHhHcCCChHHHHHHHccCC---CCChhhHHHHHHHHhcCch---HHHHHHH
Q 008183 13 NTSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIP---SPNIVSWTALISAHSNSPL---SLNIFLS 86 (575)
Q Consensus 13 ~~~~~~~~~~~~~~~~g~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~---a~~~~~~ 86 (575)
+..++|......-++..+.+.+.|..+--.+-...++++|.+.|.... +.|...|--+----++.++ ..+.-.+
T Consensus 55 g~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~ 134 (700)
T KOG1156|consen 55 GKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQ 134 (700)
T ss_pred cchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 344455555554444444556666666666666677777777776543 3344444433222233333 3333333
Q ss_pred HhhCCCCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCC-CCchhHHHHHHH------HHHhCCChHHHHHHHH
Q 008183 87 MLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSL-HDKPFCGSALVH------FYSRFRSPDNAKKVFD 159 (575)
Q Consensus 87 m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~------~~~~~g~~~~A~~~f~ 159 (575)
..+. .+-....|..+.-+.--.| +...+..+.+...+... .|+...+.-... ...+.|..++|.+.+.
T Consensus 135 LLql----~~~~ra~w~~~Avs~~L~g-~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~ 209 (700)
T KOG1156|consen 135 LLQL----RPSQRASWIGFAVAQHLLG-EYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLL 209 (700)
T ss_pred HHHh----hhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 3332 1223345555555555566 77777777777766652 455554433222 2345677777777665
Q ss_pred hcCCC--Ccch-HHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHH-hcc-cHHHHHHHHHHHHHhCCCC
Q 008183 160 EIRER--DVVC-YGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAA-ELA-AMEQCRVIHGHAVVSGLDR 234 (575)
Q Consensus 160 ~m~~~--~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-~~~-~~~~a~~~~~~~~~~g~~~ 234 (575)
..... |-.. -.+-..-+.+.+++++|..++..+... .||..-|...+..+. +.. ..+....+|....+. ++.
T Consensus 210 ~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y~r 286 (700)
T KOG1156|consen 210 DNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK-YPR 286 (700)
T ss_pred hhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-Ccc
Confidence 54331 2222 233455567778888888888887764 477666655554444 222 223233455544332 111
Q ss_pred chhHHHHHHHHHHccCCHHHH-HHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHH----HHcC----------C
Q 008183 235 NVIVGTGLIDGYGKAGIVSDA-RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLL----EMRG----------F 299 (575)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A-~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m----~~~g----------~ 299 (575)
....-..=++.. ....+.+. -+++...+...-...+..+.+.|-.-...+-..++.-.+ ...| -
T Consensus 287 ~e~p~Rlplsvl-~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E 365 (700)
T KOG1156|consen 287 HECPRRLPLSVL-NGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQE 365 (700)
T ss_pred cccchhccHHHh-CcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccC
Confidence 000000000000 01112222 222222233222223333333332222111111111111 1111 1
Q ss_pred CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHH
Q 008183 300 APDE--YSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAMP--FEPDAAVW 374 (575)
Q Consensus 300 ~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~ 374 (575)
+|.. .|+..+...+-..|+++.|..+++... +-.|+ ++.|-.=...+...|.+++|..++++.. -.||...-
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AI---dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~IN 442 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI---DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAIN 442 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh---ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHH
Confidence 3444 345556677888999999999999663 44677 5677777788999999999999998873 24555444
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCC---C---c-hhHHH--HHHHHHhCCCchHHHHHHHHH
Q 008183 375 RALLSFSAIHGKADMASKMGKRLIDINPY---D---D-SAYVI--VANVLSGVGRWDEVAEVRKVM 431 (575)
Q Consensus 375 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~---~-~~~~~--l~~~~~~~g~~~~a~~~~~~m 431 (575)
.--..-..+.++.++|.++.....+.+.. + . -.|.. =..+|.+.|++..|.+=|..+
T Consensus 443 sKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 443 SKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 34445556778899999988887765531 1 0 12222 245677888887777655444
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=8.8e-05 Score=63.13 Aligned_cols=106 Identities=12% Similarity=-0.039 Sum_probs=74.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 008183 306 FLAVLTALCNAGLAGESEKWIERMKVRYKLEP-GLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSA 382 (575)
Q Consensus 306 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 382 (575)
+.....++...|++++|...|.... .+.| +...|..+..++.+.|++++|...|++. .+.| +...|..+..++.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLV---MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 3345566677777777777777663 2344 3667777777777778888887777776 3444 4777777777777
Q ss_pred HcCChHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 008183 383 IHGKADMASKMGKRLIDINPYDDSAYVIVANV 414 (575)
Q Consensus 383 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 414 (575)
..|+.++|...+++.++..|.++..+.....+
T Consensus 104 ~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~ 135 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKMSYADASWSEIRQNA 135 (144)
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 78888888888888888887777666554443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00034 Score=63.14 Aligned_cols=153 Identities=16% Similarity=0.186 Sum_probs=86.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhcc
Q 008183 273 AMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRA 352 (575)
Q Consensus 273 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 352 (575)
.+-..+...|+-+....+....... ..-|.......+....+.|++.+|...+.+.. . .-++|...|+.+.-+|.+.
T Consensus 71 ~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~-~-l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 71 KLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAA-R-LAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHh-c-cCCCChhhhhHHHHHHHHc
Confidence 3444455555555555554443322 11233334445555566666666666666552 1 2233456666666666666
Q ss_pred CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHH
Q 008183 353 GRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVR 428 (575)
Q Consensus 353 g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 428 (575)
|++++|..-|.+. .+.| +....+.|.-.+.-.|+.+.|+.++.......+.+..+-..|.......|++++|.++-
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 6666666665554 3334 35556666666666666666666666666666656666666666666666666666553
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0033 Score=60.98 Aligned_cols=209 Identities=10% Similarity=-0.001 Sum_probs=139.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHhcCCC---CcchHHHHHHHHHhCC-CchHHHHHHHHhHHCCCCcCHHHHHHHHHHHH
Q 008183 137 CGSALVHFYSRFRSPDNAKKVFDEIRER---DVVCYGAMIVGFAQNS-RLVDSLSVFADMRSSDVGSTMYCVSGALRAAA 212 (575)
Q Consensus 137 ~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 212 (575)
+++.+-..+...++.++|+.+.+++.+. +..+|+.--..+...| ++++++..++++.+... -+..+|..--..+.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~ 117 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHH
Confidence 4556666777888999999999998763 4446666556666667 67999999999987542 23345655544555
Q ss_pred hcccH--HHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHc---CCh-
Q 008183 213 ELAAM--EQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQ---GDQ- 284 (575)
Q Consensus 213 ~~~~~--~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~---g~~- 284 (575)
+.+.. +.+..+...+++.. +-+..+|+...-++.+.|+++++++.+++++. ..|..+|+.....+.+. |..
T Consensus 118 ~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccccc
Confidence 56653 66788888888765 66788999999999999999999999999665 66788898877666554 222
Q ss_pred ---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhc
Q 008183 285 ---STVLELFHLLEMRGFAPDEYSFLAVLTALCNA----GLAGESEKWIERMKVRYKLEP-GLEHYTCLISAMGR 351 (575)
Q Consensus 285 ---~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~----g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~ 351 (575)
+++++...++.... +-|...|+.+...+... +...+|..++.+.. + ..| +......|++.|+.
T Consensus 197 ~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~-~--~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 197 AMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVL-S--KDSNHVFALSDLLDLLCE 267 (320)
T ss_pred ccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhh-c--ccCCcHHHHHHHHHHHHh
Confidence 34555555555542 22556666666666552 23345666655542 1 233 24555666666664
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.13 E-value=4.1e-06 Score=51.32 Aligned_cols=34 Identities=24% Similarity=0.390 Sum_probs=29.9
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCc
Q 008183 166 VVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199 (575)
Q Consensus 166 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 199 (575)
+.+||++|.+|++.|+++.|+++|++|++.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999888887
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0015 Score=64.25 Aligned_cols=174 Identities=14% Similarity=0.083 Sum_probs=120.7
Q ss_pred HHHHHHHHhhhCC------CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008183 252 VSDARRVFDENLS------VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKW 325 (575)
Q Consensus 252 ~~~A~~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 325 (575)
+.++++.-+. ++ .++...+...+.+.........+-.++ .+... ..-...-|..-+. ....|.+++|+..
T Consensus 253 Ia~lr~ra~q-~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~-~~~~~-~~~~aa~YG~A~~-~~~~~~~d~A~~~ 328 (484)
T COG4783 253 IADLRNRAEQ-SPPYNKLDSPDFQLARARIRAKYEALPNQQAADLL-AKRSK-RGGLAAQYGRALQ-TYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHh-CCCCCCCCCccHHHHHHHHHHHhccccccchHHHH-HHHhC-ccchHHHHHHHHH-HHHhcccchHHHH
Confidence 4455555555 44 334445555555443333333333332 22222 1112333444443 4567899999999
Q ss_pred HHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 008183 326 IERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM-PFEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDINP 402 (575)
Q Consensus 326 ~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 402 (575)
+..+... .|+ ........+.+.+.++.++|.+.++++ ...|+ ...+-.+..++.+.|++++|..++++....+|
T Consensus 329 l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p 405 (484)
T COG4783 329 LQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDP 405 (484)
T ss_pred HHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Confidence 9988543 455 556667778899999999999999988 56776 77788888999999999999999999999999
Q ss_pred CCchhHHHHHHHHHhCCCchHHHHHHHHHh
Q 008183 403 YDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432 (575)
Q Consensus 403 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 432 (575)
.++..|..|..+|...|+..++.....+..
T Consensus 406 ~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 406 EDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred CCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 999999999999999998888877766554
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.6e-05 Score=65.53 Aligned_cols=99 Identities=11% Similarity=-0.057 Sum_probs=87.7
Q ss_pred CCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHH
Q 008183 335 LEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVA 412 (575)
Q Consensus 335 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 412 (575)
+.|+. +..+...+...|++++|...|+.. ...| +...|..+..++...|++++|...++++.+++|.++.++..+.
T Consensus 22 ~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg 99 (144)
T PRK15359 22 VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTG 99 (144)
T ss_pred cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 34553 556777889999999999999987 4556 5889999999999999999999999999999999999999999
Q ss_pred HHHHhCCCchHHHHHHHHHhhCC
Q 008183 413 NVLSGVGRWDEVAEVRKVMKDRR 435 (575)
Q Consensus 413 ~~~~~~g~~~~a~~~~~~m~~~~ 435 (575)
.++...|++++|...++...+..
T Consensus 100 ~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 100 VCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999987643
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00025 Score=70.73 Aligned_cols=242 Identities=14% Similarity=0.075 Sum_probs=168.8
Q ss_pred HHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHH
Q 008183 176 FAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255 (575)
Q Consensus 176 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 255 (575)
+.++|++.+|.-.|+...+.. +-+...|--|-...+..++-..|...+...++.. +-+..+.-+|.-.|...|.-.+|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 467888888888888776652 2244567777777777777777888888777764 55677777788888888888888
Q ss_pred HHHHhhhCC-C----------CChhhHHHHHHHHHHcCChHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008183 256 RRVFDENLS-V----------LNSIAWNAMMAGYAQQGDQSTVLELFHLLE-MRGFAPDEYSFLAVLTALCNAGLAGESE 323 (575)
Q Consensus 256 ~~~~~~~~~-~----------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 323 (575)
.+.++.=+. . ++...-+. ..+..........++|-++. ..+..+|......|--.|--.|.+++|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 888775111 0 01000000 11222223445566666664 4453455555556655677889999999
Q ss_pred HHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 008183 324 KWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM-PFEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDI 400 (575)
Q Consensus 324 ~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 400 (575)
..|+... .++|+ ...||.|.-.++...+.++|...|++. .++|+ +.++..|.-+|...|.+++|.+.|-.++.+
T Consensus 451 Dcf~~AL---~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 451 DCFEAAL---QVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHH---hcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 9999774 55776 789999999999999999999999987 78998 888888999999999999999998888764
Q ss_pred CCC----------CchhHHHHHHHHHhCCCchHH
Q 008183 401 NPY----------DDSAYVIVANVLSGVGRWDEV 424 (575)
Q Consensus 401 ~p~----------~~~~~~~l~~~~~~~g~~~~a 424 (575)
.+. +..+|..|=.++...++.|-+
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 432 123566665555555555543
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.10 E-value=6e-06 Score=50.57 Aligned_cols=33 Identities=30% Similarity=0.621 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 008183 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAP 301 (575)
Q Consensus 269 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 301 (575)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888877
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00095 Score=72.29 Aligned_cols=44 Identities=9% Similarity=0.024 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 008183 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLS 416 (575)
Q Consensus 373 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 416 (575)
++--|-.-|...++++++..+++.+++.+|.|..+..-++..|.
T Consensus 225 ~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 225 LLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 33334444445555555555555555555555555444444443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.014 Score=54.76 Aligned_cols=277 Identities=14% Similarity=0.094 Sum_probs=167.8
Q ss_pred HHHHhCCChHHHHHHHHhcCCCCcchHHHHH---HHHHhCCCchHHHHHHHHhHHCCCCcC------------H--HHHH
Q 008183 143 HFYSRFRSPDNAKKVFDEIRERDVVCYGAMI---VGFAQNSRLVDSLSVFADMRSSDVGST------------M--YCVS 205 (575)
Q Consensus 143 ~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~------------~--~t~~ 205 (575)
..|...|+..-|+.=|+...+..+..+.+-| ..+.+.|.+++|..-|+...+....-+ . ....
T Consensus 80 T~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~ 159 (504)
T KOG0624|consen 80 TVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLV 159 (504)
T ss_pred HHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHH
Confidence 3444555555555555444432222222222 234556666666666666554321100 0 1122
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhh--CCCCChhhHHHHHHHHHHcCC
Q 008183 206 GALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDEN--LSVLNSIAWNAMMAGYAQQGD 283 (575)
Q Consensus 206 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~li~~~~~~g~ 283 (575)
..+..+...|+...+......+++.. +-|...+..-..+|...|.+..|..-++.. +...++.+..-+-..+...|+
T Consensus 160 ~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd 238 (504)
T KOG0624|consen 160 QQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGD 238 (504)
T ss_pred HHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhh
Confidence 33444555677777777777777653 456777777777888888888777665541 334555566666666777788
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHH-------HH------HHHHhcCCHHHHHHHHHHHHHhcCCCCC-----hhHHHHH
Q 008183 284 QSTVLELFHLLEMRGFAPDEYSFLA-------VL------TALCNAGLAGESEKWIERMKVRYKLEPG-----LEHYTCL 345 (575)
Q Consensus 284 ~~~A~~l~~~m~~~g~~p~~~t~~~-------ll------~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~l 345 (575)
.+.++...++-.+ +.||...... +. ......+++.++.+-.+.... ..|. ...+..+
T Consensus 239 ~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk---~ep~~~~ir~~~~r~~ 313 (504)
T KOG0624|consen 239 AENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK---NEPEETMIRYNGFRVL 313 (504)
T ss_pred HHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---cCCcccceeeeeehee
Confidence 8887777777665 4555432111 11 112334666666666665532 2344 2344556
Q ss_pred HHHHhccCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchH
Q 008183 346 ISAMGRAGRLEDAERIAMAM-PFEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDE 423 (575)
Q Consensus 346 i~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 423 (575)
-..|...|++.+|++.-.+. .+.|| +.++.-=..+|.....++.|..-|+.+.+.+++|..+-..+ +.
T Consensus 314 c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGl----------e~ 383 (504)
T KOG0624|consen 314 CTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGL----------ER 383 (504)
T ss_pred eecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHH----------HH
Confidence 66777889999999887766 56675 88888888899999999999999999999999886553332 55
Q ss_pred HHHHHHHHhhCC
Q 008183 424 VAEVRKVMKDRR 435 (575)
Q Consensus 424 a~~~~~~m~~~~ 435 (575)
|.++.++..+++
T Consensus 384 Akrlkkqs~kRD 395 (504)
T KOG0624|consen 384 AKRLKKQSGKRD 395 (504)
T ss_pred HHHHHHHhccch
Confidence 666665554443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0007 Score=70.10 Aligned_cols=241 Identities=17% Similarity=0.115 Sum_probs=161.8
Q ss_pred CCchhHHHHHHH--HHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHC-C--------CCcC
Q 008183 132 HDKPFCGSALVH--FYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS-D--------VGST 200 (575)
Q Consensus 132 ~~~~~~~~~li~--~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g--------~~p~ 200 (575)
..|..+..++++ .|..-|+.|.|.+-.+.++ +...|..|.+.|.+..+.+-|.--+..|... | -.|+
T Consensus 723 ~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~ 800 (1416)
T KOG3617|consen 723 NCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE 800 (1416)
T ss_pred ccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc
Confidence 446777777775 4778899999988877665 5678999999999998888777666665321 1 1222
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCCC-hhhHHHHHHHHH
Q 008183 201 MYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN-SIAWNAMMAGYA 279 (575)
Q Consensus 201 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~li~~~~ 279 (575)
.+=..+.-.....|.+++|+.+|++-.+.. .|=..|-..|.+++|.++-+. -..-. -.||..-..-+-
T Consensus 801 -e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~-~DRiHLr~Tyy~yA~~Le 869 (1416)
T KOG3617|consen 801 -EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAET-KDRIHLRNTYYNYAKYLE 869 (1416)
T ss_pred -chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhh-ccceehhhhHHHHHHHHH
Confidence 222333333467889999999998877643 455677888999999988765 22211 134555555555
Q ss_pred HcCChHHHHHHHHHH----------HHcCC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChh
Q 008183 280 QQGDQSTVLELFHLL----------EMRGF---------APDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLE 340 (575)
Q Consensus 280 ~~g~~~~A~~l~~~m----------~~~g~---------~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 340 (575)
..++.+.|++.|++- ..... .-|...|......+...|+.+.|+.+|... +
T Consensus 870 ar~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A-~--------- 939 (1416)
T KOG3617|consen 870 ARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA-K--------- 939 (1416)
T ss_pred hhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh-h---------
Confidence 667777777777542 22111 123334444444455678888888888755 2
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008183 341 HYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLI 398 (575)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 398 (575)
-|-+++...|-.|+.++|-++-++-+ |....-.|..-|-..|++.+|..+|.++.
T Consensus 940 D~fs~VrI~C~qGk~~kAa~iA~esg---d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 940 DYFSMVRIKCIQGKTDKAARIAEESG---DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hhhhheeeEeeccCchHHHHHHHhcc---cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 35567777788889999888888754 55555567888888888888888887765
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0057 Score=60.84 Aligned_cols=341 Identities=15% Similarity=0.076 Sum_probs=173.7
Q ss_pred hcCch---HHHHHHHHhhCCCCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCCh
Q 008183 75 SNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP 151 (575)
Q Consensus 75 ~~~g~---a~~~~~~m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 151 (575)
...|+ |+.+|.+..... ++|.+.|+.-..+++..+ +++.+.+=-..-++.. +.=+.-|+.+-.+..-.|++
T Consensus 13 ~s~~d~~~ai~~~t~ai~l~----p~nhvlySnrsaa~a~~~-~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIMLS----PTNHVLYSNRSAAYASLG-SYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred cccccHHHHHHHHHHHHccC----CCccchhcchHHHHHHHh-hHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhcccH
Confidence 34455 777777777653 457777777777777777 7776665544444433 22234566666666667777
Q ss_pred HHHHHHHHhcCCC---CcchHHHHHHHHHhCCCchHHHHHHHHh-HHCCCCcCH--------HHHHHHHHHHHhc-----
Q 008183 152 DNAKKVFDEIRER---DVVCYGAMIVGFAQNSRLVDSLSVFADM-RSSDVGSTM--------YCVSGALRAAAEL----- 214 (575)
Q Consensus 152 ~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~g~~p~~--------~t~~~ll~~~~~~----- 214 (575)
++|...|.+-.+. |...++-+..++... . ++.+.|..- .-.++.-++ .+|..++...-+.
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 7777777765442 344555555554111 0 001111000 000011111 1222222222110
Q ss_pred --ccHHHHHHHHHHHHH--------hC-------CCC------------c----------hhHHHHHHHHHHccCCHHHH
Q 008183 215 --AAMEQCRVIHGHAVV--------SG-------LDR------------N----------VIVGTGLIDGYGKAGIVSDA 255 (575)
Q Consensus 215 --~~~~~a~~~~~~~~~--------~g-------~~~------------~----------~~~~~~li~~~~~~g~~~~A 255 (575)
.+.+...+.+..+.. .| ..| | ..-...+.++.-+..+++.|
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 001111111111100 00 011 0 01123445555555666666
Q ss_pred HHHHhhhCCCCChhh-HHHHHHHHHHcCChHHHHHHHHHHHHcCCCC--C----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008183 256 RRVFDENLSVLNSIA-WNAMMAGYAQQGDQSTVLELFHLLEMRGFAP--D----EYSFLAVLTALCNAGLAGESEKWIER 328 (575)
Q Consensus 256 ~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~----~~t~~~ll~a~~~~g~~~~a~~~~~~ 328 (575)
.+-+...+.-....+ ++..-.+|...|.+.+....-..-.+.|-.- + ...+..+-.++.+.++++.+..+|.+
T Consensus 244 ~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~k 323 (539)
T KOG0548|consen 244 IQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQK 323 (539)
T ss_pred HHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHH
Confidence 666655343212333 3444445666666665555555444433210 0 11122233344455666667766665
Q ss_pred HHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCC-CCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCch
Q 008183 329 MKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMP-FEPDA-AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDS 406 (575)
Q Consensus 329 m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 406 (575)
....+. .|+ ...+....+++.+..+... +.|+. .--..=...+.+.|++..|...|.+++..+|+|+.
T Consensus 324 aLte~R-t~~---------~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~ 393 (539)
T KOG0548|consen 324 ALTEHR-TPD---------LLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDAR 393 (539)
T ss_pred Hhhhhc-CHH---------HHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhH
Confidence 533321 222 1223334444444443331 33432 11222245677889999999999999999999999
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 407 AYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 407 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
.|....-+|.+.|.+..|.+-.+...+.
T Consensus 394 lYsNRAac~~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 394 LYSNRAACYLKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 9999999999999999998876665554
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00034 Score=63.16 Aligned_cols=135 Identities=16% Similarity=0.118 Sum_probs=111.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC--CCCCCHHHHHH
Q 008183 299 FAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM--PFEPDAAVWRA 376 (575)
Q Consensus 299 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ 376 (575)
..|+......+-.++...|+-+....+....... -..|......++....+.|++.+|...|++. +-.+|...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 3444333355667777788888888877765322 2334556667899999999999999999998 34568999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCC
Q 008183 377 LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435 (575)
Q Consensus 377 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 435 (575)
+..+|-+.|+.++|...|.+..++.|.++..++.|.-.|.-.|+.++|..++......+
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999998877654
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00013 Score=61.34 Aligned_cols=95 Identities=12% Similarity=0.000 Sum_probs=83.9
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 008183 339 LEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLS 416 (575)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 416 (575)
....-.+...+...|++++|.++|+-. .+.| +..-|-.|...+...|++++|...|.++..++|+++.++..+..+|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 444455666778899999999999988 4566 57888999999999999999999999999999999999999999999
Q ss_pred hCCCchHHHHHHHHHhh
Q 008183 417 GVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 417 ~~g~~~~a~~~~~~m~~ 433 (575)
..|+.+.|.+.|+....
T Consensus 115 ~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR 131 (157)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999997764
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0037 Score=61.59 Aligned_cols=179 Identities=18% Similarity=0.097 Sum_probs=127.3
Q ss_pred CchhHHHHHHHHHHccCCHHHHHHHHhhhCCC-CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH-HHHH
Q 008183 234 RNVIVGTGLIDGYGKAGIVSDARRVFDENLSV-LNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFL-AVLT 311 (575)
Q Consensus 234 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~ll~ 311 (575)
|+...+...+........-..+..++.. ..+ .....+.-....+...|++++|+..++.+... .||...|. ....
T Consensus 272 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~ 348 (484)
T COG4783 272 PDFQLARARIRAKYEALPNQQAADLLAK-RSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGD 348 (484)
T ss_pred ccHHHHHHHHHHHhccccccchHHHHHH-HhCccchHHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 3444445544443333333333333332 222 33344444555667889999999999998875 45555544 4556
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChH
Q 008183 312 ALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM--PFEPDAAVWRALLSFSAIHGKAD 388 (575)
Q Consensus 312 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~ 388 (575)
.+...++..+|.+.++.+. ...|+ ....-.+..+|.+.|++.+|..++++. ...-|+..|..|..+|...|+..
T Consensus 349 i~~~~nk~~~A~e~~~kal---~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~ 425 (484)
T COG4783 349 ILLEANKAKEAIERLKKAL---ALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRA 425 (484)
T ss_pred HHHHcCChHHHHHHHHHHH---hcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchH
Confidence 7788999999999999885 34677 566677889999999999999999887 33346999999999999999988
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCC
Q 008183 389 MASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435 (575)
Q Consensus 389 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 435 (575)
++.... ...|.-.|+|++|...+...+++.
T Consensus 426 ~a~~A~-----------------AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 426 EALLAR-----------------AEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HHHHHH-----------------HHHHHhCCCHHHHHHHHHHHHHhc
Confidence 877654 455777899999999888877653
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00016 Score=60.94 Aligned_cols=100 Identities=17% Similarity=0.294 Sum_probs=76.0
Q ss_pred CCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHH
Q 008183 335 LEPG-LEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIV 411 (575)
Q Consensus 335 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 411 (575)
..|+ ......+...+...|++++|.+.|+.. ...| +...|..+...+...|++++|...+++.++.+|.++..+..+
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 3443 345556667777788888888888776 3344 567777788888888888888888888888888888888888
Q ss_pred HHHHHhCCCchHHHHHHHHHhhC
Q 008183 412 ANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 412 ~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
...|...|++++|...++...+.
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888888888888888777654
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00041 Score=68.67 Aligned_cols=125 Identities=14% Similarity=0.071 Sum_probs=82.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhccc
Q 008183 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAA 216 (575)
Q Consensus 137 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 216 (575)
...+|+..+...++++.|..+|+++.+.+...+..++..+...++..+|++++++.... .+-|...+..-...+.+.++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCC
Confidence 34455666666778888888888887766666667777777777777888887777653 12244444555555666677
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC
Q 008183 217 MEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS 264 (575)
Q Consensus 217 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 264 (575)
.+.|..+.+++++.. +.+-.+|..|..+|.+.|+++.|+..++. ++
T Consensus 250 ~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs-~P 295 (395)
T PF09295_consen 250 YELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNS-CP 295 (395)
T ss_pred HHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhc-Cc
Confidence 777777777766653 33445666677777777777777766665 44
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0032 Score=67.53 Aligned_cols=142 Identities=9% Similarity=-0.000 Sum_probs=103.2
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHH-HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 008183 165 DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMY-CVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLI 243 (575)
Q Consensus 165 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 243 (575)
++..+-.|.....+.|++++|+.+++...+ +.||.. ....+...+.+.+.+++|....++..... +-+....+.+.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a 161 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEA 161 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHH
Confidence 566777788888888888888888888876 466654 56667777788888888888888887764 44566667777
Q ss_pred HHHHccCCHHHHHHHHhhhCC-CC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008183 244 DGYGKAGIVSDARRVFDENLS-VL-NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL 310 (575)
Q Consensus 244 ~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 310 (575)
.++.+.|++++|.++|++.+. .| +..+|..+..++-..|+.++|...|++..+. ..|....|+..+
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~ 229 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL 229 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH
Confidence 778888888888888888553 22 3567777777788888888888888877665 334445555554
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0048 Score=65.65 Aligned_cols=389 Identities=12% Similarity=0.020 Sum_probs=194.1
Q ss_pred HHHHHHHHHhhCC--CcccHHHHHHHHhHcCCChHHHHHHHccCCC---CChhhHHHHHHHHhcCch---HHHHHHHHhh
Q 008183 18 PRIVHARALKSSQ--ADRSIYNNLITNYSKSNLLSYSLRLFNHIPS---PNIVSWTALISAHSNSPL---SLNIFLSMLR 89 (575)
Q Consensus 18 ~~~~~~~~~~~g~--~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~---a~~~~~~m~~ 89 (575)
...+|..+....+ .=...|+.|-+.|+...+...|.+.|+..-+ .+..+|..+...|++..+ |..+.-.--+
T Consensus 475 ~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~q 554 (1238)
T KOG1127|consen 475 ALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQ 554 (1238)
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhh
Confidence 3445555544444 3345788888888888888888888887653 455677788888888776 4444211111
Q ss_pred CCCCCcCCChhhHHHHHH--HHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcc
Q 008183 90 HPTLSFLPNQRTLASLFK--TCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVV 167 (575)
Q Consensus 90 ~~~~~~~p~~~t~~~ll~--~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~ 167 (575)
. -+.-...++.+-. .+-..+ ++..+..-++...+.. +.|...|..|..+|..+|++..|.++|++...-++.
T Consensus 555 k----a~a~~~k~nW~~rG~yyLea~-n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~ 628 (1238)
T KOG1127|consen 555 K----APAFACKENWVQRGPYYLEAH-NLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL 628 (1238)
T ss_pred h----chHHHHHhhhhhccccccCcc-chhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH
Confidence 1 1111222222222 223334 5555666666665554 557778888888999999999999999877664443
Q ss_pred hHHH---HHHHHHhCCCchHHHHHHHHhHHC------CCCcCHHHHHHHHHHHHhcccHHHHHHHHHH-------HHHhC
Q 008183 168 CYGA---MIVGFAQNSRLVDSLSVFADMRSS------DVGSTMYCVSGALRAAAELAAMEQCRVIHGH-------AVVSG 231 (575)
Q Consensus 168 ~~~~---li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~-------~~~~g 231 (575)
++-. ....-+..|.+.+|+..+...... +..--..++.-+...+...|-..++..+++. .....
T Consensus 629 s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~ 708 (1238)
T KOG1127|consen 629 SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS 708 (1238)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 3221 222345678888888888776432 1111112222222222222322222222222 22221
Q ss_pred CCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChh--hHHHHHHH-HHHcCCh---H---HHHHHHHHHHHcCCCCC
Q 008183 232 LDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSI--AWNAMMAG-YAQQGDQ---S---TVLELFHLLEMRGFAPD 302 (575)
Q Consensus 232 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~li~~-~~~~g~~---~---~A~~l~~~m~~~g~~p~ 302 (575)
...+...|-.+ .+|..+|-. .+ |+.+ .+..++.. .-..+.. + -+.+.+-.-.+ ...+
T Consensus 709 ~~~~~~~Wi~a----------sdac~~f~q-~e-~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~ 774 (1238)
T KOG1127|consen 709 LQSDRLQWIVA----------SDACYIFSQ-EE-PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIH 774 (1238)
T ss_pred hhhhHHHHHHH----------hHHHHHHHH-hc-ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--Hhhc
Confidence 11122222111 223333333 22 2211 11111111 1111111 0 01111100000 1112
Q ss_pred HHHHHHHHHHHHh-------cC-CHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CH
Q 008183 303 EYSFLAVLTALCN-------AG-LAGESEKWIERMKVRYKLEP-GLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DA 371 (575)
Q Consensus 303 ~~t~~~ll~a~~~-------~g-~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~ 371 (575)
..++..+...|.+ .+ +...|...+.... .+.. +..+|+.|--+ +..|.+.-|...|-+- -..| ..
T Consensus 775 ~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV---~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~ 850 (1238)
T KOG1127|consen 775 MYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAV---SLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCH 850 (1238)
T ss_pred cchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHH---HHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccch
Confidence 3333333333222 11 1223444443331 2222 34555555443 5556666666655443 2233 46
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHH
Q 008183 372 AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKV 430 (575)
Q Consensus 372 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 430 (575)
.+|..+.-.+.+..|++.|...+.+...++|.|...|......-...|+.-++..+|..
T Consensus 851 ~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 851 CQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred hheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 77777777777788888888888888888887777776666666666666666666553
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.88 E-value=1.6e-05 Score=47.41 Aligned_cols=31 Identities=29% Similarity=0.694 Sum_probs=24.9
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHhHHCCC
Q 008183 167 VCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197 (575)
Q Consensus 167 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 197 (575)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888877663
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00035 Score=69.13 Aligned_cols=122 Identities=15% Similarity=0.187 Sum_probs=91.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH
Q 008183 306 FLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAI 383 (575)
Q Consensus 306 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~ 383 (575)
..+|+..+...++++.|..+++++..+ .|+ ....++..+...++-.+|.+++++. ...| |......-...|.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 334555556667777777777777433 244 3344666666677777777777665 2233 56666666677888
Q ss_pred cCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHh
Q 008183 384 HGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432 (575)
Q Consensus 384 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 432 (575)
.++++.|+.+.+++.+..|.+..+|..|..+|...|++++|.-.++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999988775
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.87 E-value=1.8e-05 Score=47.21 Aligned_cols=31 Identities=29% Similarity=0.722 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 008183 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGF 299 (575)
Q Consensus 269 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 299 (575)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888887764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.015 Score=63.26 Aligned_cols=235 Identities=12% Similarity=0.081 Sum_probs=128.6
Q ss_pred hhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 008183 99 QRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQ 178 (575)
Q Consensus 99 ~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~ 178 (575)
...+..++..+...+ +++.+.++.+..++.. +.....|-.+...|.+.++.+++..+ .++.....
T Consensus 31 ~~a~~~Li~~~~~~~-~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~ 95 (906)
T PRK14720 31 FKELDDLIDAYKSEN-LTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQ 95 (906)
T ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhccc
Confidence 345555666665666 6666666666544432 11222222222245555554444333 23333333
Q ss_pred CCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHH
Q 008183 179 NSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRV 258 (575)
Q Consensus 179 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 258 (575)
..++.-...+...|.. ..-+...+-.+..+|.+.|+.+++..+++.+++.. +-|+.+.|.+...|+.. ++++|.++
T Consensus 96 ~~~~~~ve~~~~~i~~--~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m 171 (906)
T PRK14720 96 NLKWAIVEHICDKILL--YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITY 171 (906)
T ss_pred ccchhHHHHHHHHHHh--hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHH
Confidence 3344333333333433 12233466667777888888888888888888876 66788888888888888 88888888
Q ss_pred HhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC
Q 008183 259 FDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEY-SFLAVLTALCNAGLAGESEKWIERMKVRYKLEP 337 (575)
Q Consensus 259 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 337 (575)
+.+ .+.-|...+++.++.++|.++.... |+.+ -|..++ +.+....+..-
T Consensus 172 ~~K------------AV~~~i~~kq~~~~~e~W~k~~~~~--~~d~d~f~~i~----------------~ki~~~~~~~~ 221 (906)
T PRK14720 172 LKK------------AIYRFIKKKQYVGIEEIWSKLVHYN--SDDFDFFLRIE----------------RKVLGHREFTR 221 (906)
T ss_pred HHH------------HHHHHHhhhcchHHHHHHHHHHhcC--cccchHHHHHH----------------HHHHhhhccch
Confidence 877 3344677778888888888877652 2222 222222 22211112222
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 008183 338 GLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSA 382 (575)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 382 (575)
-+.++-.+-.-|-...+++++..+++.+ ...| |.....-|+..|.
T Consensus 222 ~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 222 LVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 2334444445555666666666666655 3333 3444445555544
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0051 Score=55.75 Aligned_cols=147 Identities=18% Similarity=0.152 Sum_probs=94.9
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHh----cc
Q 008183 277 GYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMG----RA 352 (575)
Q Consensus 277 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~----~~ 352 (575)
.|+..|++++|++..+... ..+....+ ...+.+..+.+-|.+.++.|. . + -+..+.+-|..++. -.
T Consensus 117 i~~~~~~~deAl~~~~~~~----~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq-~--i-ded~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 117 IYMHDGDFDEALKALHLGE----NLEAAALN--VQILLKMHRFDLAEKELKKMQ-Q--I-DEDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HhhcCCChHHHHHHHhccc----hHHHHHHH--HHHHHHHHHHHHHHHHHHHHH-c--c-chHHHHHHHHHHHHHHhccc
Confidence 3666677777776665511 11222222 122345566777777777773 2 1 23344444444443 34
Q ss_pred CChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHH-HHHHH
Q 008183 353 GRLEDAERIAMAM--PFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEV-AEVRK 429 (575)
Q Consensus 353 g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~~~~ 429 (575)
+.+.+|.-+|++| +..|+..+.+....++...|++++|+.+++.++..++.++.+...++-.-...|.-.++ .+.+.
T Consensus 187 ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~ 266 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLS 266 (299)
T ss_pred hhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 5688888888888 36678888888888888889999999999999888888888877777777777765443 44555
Q ss_pred HHhh
Q 008183 430 VMKD 433 (575)
Q Consensus 430 ~m~~ 433 (575)
+++.
T Consensus 267 QLk~ 270 (299)
T KOG3081|consen 267 QLKL 270 (299)
T ss_pred HHHh
Confidence 5543
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0014 Score=55.07 Aligned_cols=88 Identities=8% Similarity=-0.038 Sum_probs=38.6
Q ss_pred HHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChH
Q 008183 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQS 285 (575)
Q Consensus 208 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~ 285 (575)
...+...|+.++|.+.+..+...+ +.+...+..+...|.+.|++++|...|+..+. +.+...|..+...|...|+++
T Consensus 24 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 102 (135)
T TIGR02552 24 AYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPE 102 (135)
T ss_pred HHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHH
Confidence 333444444444444444444432 23344444444444444444444444444221 223334444444444444444
Q ss_pred HHHHHHHHHHH
Q 008183 286 TVLELFHLLEM 296 (575)
Q Consensus 286 ~A~~l~~~m~~ 296 (575)
+|+..|+...+
T Consensus 103 ~A~~~~~~al~ 113 (135)
T TIGR02552 103 SALKALDLAIE 113 (135)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.079 Score=53.09 Aligned_cols=400 Identities=11% Similarity=0.090 Sum_probs=216.9
Q ss_pred HHhhCCCcccHHHHHHHHhHcCCChHHHHHHHccCC--CC-ChhhHHHHHHHHhcCch---HHHHHHHHhhCCCCCcCCC
Q 008183 25 ALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIP--SP-NIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPN 98 (575)
Q Consensus 25 ~~~~g~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~--~~-~~~~~~~li~~~~~~g~---a~~~~~~m~~~~~~~~~p~ 98 (575)
-++..+.|..+|+.||+-+... ..+++++.++++. .| ....|..-|.+-....+ ...+|.+....- .+
T Consensus 12 rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv-----Ln 85 (656)
T KOG1914|consen 12 RIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV-----LN 85 (656)
T ss_pred HHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-----hh
Confidence 3344447889999999988776 9999999999986 34 45578888888777777 778888877643 34
Q ss_pred hhhHHHHHHHHhhchhhHHH----HHHHHHHHH-hhCCCC-chhHHHHHHHHH---------HhCCChHHHHHHHHhcCC
Q 008183 99 QRTLASLFKTCASLSHAFLF----GLSLHSLSL-KLSLHD-KPFCGSALVHFY---------SRFRSPDNAKKVFDEIRE 163 (575)
Q Consensus 99 ~~t~~~ll~~~~~~~~~~~~----a~~~~~~~~-~~g~~~-~~~~~~~li~~~---------~~~g~~~~A~~~f~~m~~ 163 (575)
...|..-|.-.-+..+.... ..+.++..+ +.|+.+ +-..|+..++.. ....+++..++++..+..
T Consensus 86 lDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 86 LDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 55555555443333322222 223333333 345544 334566666543 344567778888888764
Q ss_pred -C---------CcchHHHHHHHH-------HhCCCchHHHHHHHHhHH--CCCCcCHHH---------------HHHHHH
Q 008183 164 -R---------DVVCYGAMIVGF-------AQNSRLVDSLSVFADMRS--SDVGSTMYC---------------VSGALR 209 (575)
Q Consensus 164 -~---------~~~~~~~li~~~-------~~~g~~~~A~~~~~~m~~--~g~~p~~~t---------------~~~ll~ 209 (575)
| |-..|..=|+.. -+...+..|.+++++... .|+..+..+ |-.+|.
T Consensus 166 tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~ 245 (656)
T KOG1914|consen 166 TPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIK 245 (656)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHH
Confidence 2 222222212111 123345667777777643 333221111 222221
Q ss_pred HHHhcccHH---------HHHHHHHHH-HHhCCCCchhHHHH-----HHHHHHccCCH-------HHHHHHHhhhCC---
Q 008183 210 AAAELAAME---------QCRVIHGHA-VVSGLDRNVIVGTG-----LIDGYGKAGIV-------SDARRVFDENLS--- 264 (575)
Q Consensus 210 ~~~~~~~~~---------~a~~~~~~~-~~~g~~~~~~~~~~-----li~~~~~~g~~-------~~A~~~~~~~~~--- 264 (575)
- -+.+-+. ...-+|++. .-.++.|++....+ .-+.+...|+. +++.++++..+.
T Consensus 246 w-EksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~ 324 (656)
T KOG1914|consen 246 W-EKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLL 324 (656)
T ss_pred H-HhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Confidence 1 1111110 011122221 22344444322111 12233334443 334444443221
Q ss_pred CCChhhHHHHHHHH---HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-Chh
Q 008183 265 VLNSIAWNAMMAGY---AQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEP-GLE 340 (575)
Q Consensus 265 ~~~~~~~~~li~~~---~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~ 340 (575)
..+..+|..+..-- ......+.....++++...-..--..+|...++.-.+..-+..|+.+|.+.. +.+..+ ++.
T Consensus 325 ~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR-~~~r~~hhVf 403 (656)
T KOG1914|consen 325 KENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAR-EDKRTRHHVF 403 (656)
T ss_pred HHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHh-hccCCcchhh
Confidence 22222333222210 0111244555566665543222223556677777777777888888888884 435455 677
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CC-CchhHHHHHHHH
Q 008183 341 HYTCLISAMGRAGRLEDAERIAMAM-PFEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDIN--PY-DDSAYVIVANVL 415 (575)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~ 415 (575)
++++++.-|| .++.+-|.++|+-- .--+| +.--...+.-+...++-..+..+|++.+... |+ ....|..++.--
T Consensus 404 Va~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yE 482 (656)
T KOG1914|consen 404 VAAALMEYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYE 482 (656)
T ss_pred HHHHHHHHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHH
Confidence 7788887666 56778888888654 22233 4444555666667777788888888887752 22 224788888888
Q ss_pred HhCCCchHHHHHHHHHhh
Q 008183 416 SGVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 416 ~~~g~~~~a~~~~~~m~~ 433 (575)
..-|+.+.+.++-+++..
T Consensus 483 S~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 483 SNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HhcccHHHHHHHHHHHHH
Confidence 888888888887776654
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0076 Score=54.69 Aligned_cols=141 Identities=16% Similarity=0.069 Sum_probs=108.0
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCC
Q 008183 289 ELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFE 368 (575)
Q Consensus 289 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 368 (575)
++.+.+.......+......-...|.+.++.++|.+..+.. -+......=+..+.+..+++-|.+.+++|.--
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i 166 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-------ENLEAAALNVQILLKMHRFDLAEKELKKMQQI 166 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34555555545555444444556689999999999987642 23444444556678889999999999999644
Q ss_pred CCHHHHHHHHHHHHHc----CChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCCC
Q 008183 369 PDAAVWRALLSFSAIH----GKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436 (575)
Q Consensus 369 p~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 436 (575)
.+..|.+-|..++.+. +.+..|.-+|+++.+.-|+.+.+.+....++...|+|++|..+++....+..
T Consensus 167 ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 167 DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 5677777777777653 4689999999999998888888999999999999999999999999887643
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0005 Score=53.07 Aligned_cols=92 Identities=16% Similarity=0.212 Sum_probs=71.4
Q ss_pred HHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCC
Q 008183 342 YTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVG 419 (575)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 419 (575)
+..+...+...|++++|...+++. ...| +...+..+...+...+++++|.+.+++..+..|.+..++..+...+...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445666677788888888888776 3344 34667777788888888888888888888888877778888888888888
Q ss_pred CchHHHHHHHHHhh
Q 008183 420 RWDEVAEVRKVMKD 433 (575)
Q Consensus 420 ~~~~a~~~~~~m~~ 433 (575)
++++|...++...+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 88888888877654
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.019 Score=61.32 Aligned_cols=86 Identities=10% Similarity=0.125 Sum_probs=61.0
Q ss_pred HHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 357 DAERIAMAM-PF-EPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 357 ~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
.|...+.+. .+ ..+..+|+.|.-. ..-|++.-|...|-+....+|.+..+|..+.-.+.+..+++.|...|...+.
T Consensus 801 ~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS- 878 (1238)
T KOG1127|consen 801 TAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS- 878 (1238)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhh-
Confidence 455555544 22 3457777776555 5557777777777777788888888888888888999999999999887765
Q ss_pred CCccCCceeEE
Q 008183 435 RVRKEGGRSWI 445 (575)
Q Consensus 435 ~~~~~~~~s~~ 445 (575)
+.|.....|+
T Consensus 879 -LdP~nl~~Wl 888 (1238)
T KOG1127|consen 879 -LDPLNLVQWL 888 (1238)
T ss_pred -cCchhhHHHH
Confidence 3444445565
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0025 Score=54.38 Aligned_cols=114 Identities=18% Similarity=0.172 Sum_probs=52.9
Q ss_pred cCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhCC-CCCCH----HHHHHHHHHHHHcCChHH
Q 008183 316 AGLAGESEKWIERMKVRYKLEP-GLEHYTCLISAMGRAGRLEDAERIAMAMP-FEPDA----AVWRALLSFSAIHGKADM 389 (575)
Q Consensus 316 ~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~----~~~~~ll~~~~~~g~~~~ 389 (575)
.++...+...++.+..+++-.| .....-.+...+...|++++|...|+... ..||. ...-.|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4555555555555533321110 01222223344555555555555555541 11221 223334455555566666
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHH
Q 008183 390 ASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKV 430 (575)
Q Consensus 390 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 430 (575)
|+..++.. ...+..+..+..+.++|.+.|++++|...|+.
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66555442 12222334555566666666666666666553
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0016 Score=53.14 Aligned_cols=101 Identities=16% Similarity=0.088 Sum_probs=53.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC----HHHHHHHHHH
Q 008183 307 LAVLTALCNAGLAGESEKWIERMKVRYKLEP-GLEHYTCLISAMGRAGRLEDAERIAMAM-PFEPD----AAVWRALLSF 380 (575)
Q Consensus 307 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~ 380 (575)
..+...+...|++++|...+..+.....-.| ....+..+...+.+.|++++|.+.|+.. ...|+ ..++..+..+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 3444445555666666666655533221111 0233444555566666666666666554 11222 3445556666
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCchh
Q 008183 381 SAIHGKADMASKMGKRLIDINPYDDSA 407 (575)
Q Consensus 381 ~~~~g~~~~a~~~~~~~~~~~p~~~~~ 407 (575)
+...|+.++|...++++++..|+++.+
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 666677777777777777666665443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0013 Score=51.43 Aligned_cols=81 Identities=9% Similarity=0.005 Sum_probs=68.8
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHhHHCCC-CcCHHHHHHHHHHHHhcc--------cHHHHHHHHHHHHHhCCCCchhH
Q 008183 168 CYGAMIVGFAQNSRLVDSLSVFADMRSSDV-GSTMYCVSGALRAAAELA--------AMEQCRVIHGHAVVSGLDRNVIV 238 (575)
Q Consensus 168 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~ 238 (575)
+-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+|+.|+..+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 334567777778999999999999999999 899999999999988753 34456788999999999999999
Q ss_pred HHHHHHHHHc
Q 008183 239 GTGLIDGYGK 248 (575)
Q Consensus 239 ~~~li~~~~~ 248 (575)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999988765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.035 Score=50.19 Aligned_cols=126 Identities=17% Similarity=0.172 Sum_probs=93.9
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHH
Q 008183 279 AQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDA 358 (575)
Q Consensus 279 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 358 (575)
-..|++++|+++++.+.+.. +.|.+++-.=+-..-..|.--+|++-+...... +..|...|.-+.+.|...|++++|
T Consensus 97 Ea~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA 173 (289)
T KOG3060|consen 97 EATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKA 173 (289)
T ss_pred HHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHH
Confidence 35678888888888888775 446667766565556667777888877777544 467889999999999999999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHHc---CChHHHHHHHHHHHhcCCCCchh
Q 008183 359 ERIAMAM-PFEP-DAAVWRALLSFSAIH---GKADMASKMGKRLIDINPYDDSA 407 (575)
Q Consensus 359 ~~~~~~m-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~p~~~~~ 407 (575)
.-.++++ -+.| +...+..+...+... .+.+.+.+.+.+.+++.|.+...
T Consensus 174 ~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ra 227 (289)
T KOG3060|consen 174 AFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRA 227 (289)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHH
Confidence 9999988 3456 455566666555443 46788899999999999865443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00013 Score=55.68 Aligned_cols=78 Identities=18% Similarity=0.324 Sum_probs=46.0
Q ss_pred cCChHHHHHHHHhC-CCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHH
Q 008183 352 AGRLEDAERIAMAM-PFEP---DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEV 427 (575)
Q Consensus 352 ~g~~~~A~~~~~~m-~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 427 (575)
.|++++|..+++++ ...| +...|-.+..++.+.|++++|..++++ .+.+|.+......++.+|.+.|++++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35566666666665 1122 344454566666677777777777666 555555555555567777777777777777
Q ss_pred HHH
Q 008183 428 RKV 430 (575)
Q Consensus 428 ~~~ 430 (575)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 654
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.11 Score=50.43 Aligned_cols=112 Identities=16% Similarity=0.181 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008183 303 EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSA 382 (575)
Q Consensus 303 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~ 382 (575)
..+.+..|.-|...|....|.++-.+. .+ |+...|-.-+.+|+..+++++-.++... +..++-|..++.+|.
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACL 248 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHH
Confidence 345666677777889888888765444 44 8899999999999999999998887654 345688999999999
Q ss_pred HcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHH
Q 008183 383 IHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVM 431 (575)
Q Consensus 383 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 431 (575)
+.|+..+|..+..++ .+..-+.+|.++|+|.+|.+.--+.
T Consensus 249 ~~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HCCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 999999999888772 1245788999999999998775443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0077 Score=51.33 Aligned_cols=122 Identities=16% Similarity=0.097 Sum_probs=69.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHH
Q 008183 274 MMAGYAQQGDQSTVLELFHLLEMRGFAPD--EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG--LEHYTCLISAM 349 (575)
Q Consensus 274 li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~ 349 (575)
++..+ ..++...+...++.+.+....-. ......+...+...|++++|...|+..... .-.|+ ......|...+
T Consensus 18 ~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA~~~ 95 (145)
T PF09976_consen 18 ALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLARIL 95 (145)
T ss_pred HHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHH
Confidence 44444 36666667666776666532211 122333445566677777777777766433 22222 12333456666
Q ss_pred hccCChHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008183 350 GRAGRLEDAERIAMAMPFE-PDAAVWRALLSFSAIHGKADMASKMGKRL 397 (575)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 397 (575)
...|++++|...++..+-. .....+......+...|+.++|...|+..
T Consensus 96 ~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 96 LQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 6777777777777665312 23445556666777777777777777654
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0016 Score=53.18 Aligned_cols=96 Identities=19% Similarity=0.097 Sum_probs=80.5
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---chhHHHH
Q 008183 340 EHYTCLISAMGRAGRLEDAERIAMAM-PFEPD----AAVWRALLSFSAIHGKADMASKMGKRLIDINPYD---DSAYVIV 411 (575)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l 411 (575)
.++..+...+.+.|++++|.+.|+.+ ...|+ ...+..+..++...|+++.|...++.+....|.+ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 35667778889999999999999888 22343 4566778899999999999999999999988764 4578889
Q ss_pred HHHHHhCCCchHHHHHHHHHhhCC
Q 008183 412 ANVLSGVGRWDEVAEVRKVMKDRR 435 (575)
Q Consensus 412 ~~~~~~~g~~~~a~~~~~~m~~~~ 435 (575)
..++.+.|++++|.+.++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 999999999999999999998764
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.17 Score=50.89 Aligned_cols=368 Identities=11% Similarity=0.073 Sum_probs=213.8
Q ss_pred CChhhHHHHHHHHhcCch--HHHHHHHHhhCCCCCcCC-ChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHH
Q 008183 62 PNIVSWTALISAHSNSPL--SLNIFLSMLRHPTLSFLP-NQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCG 138 (575)
Q Consensus 62 ~~~~~~~~li~~~~~~g~--a~~~~~~m~~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 138 (575)
-|+.+|+.||+-+-...- +.+.++++.. ..| ....|..-+..-.+.. +++..+.+|...+..-+. ...|
T Consensus 18 ~di~sw~~lire~qt~~~~~~R~~YEq~~~-----~FP~s~r~W~~yi~~El~sk-dfe~VEkLF~RCLvkvLn--lDLW 89 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQPIDKVRETYEQLVN-----VFPSSPRAWKLYIERELASK-DFESVEKLFSRCLVKVLN--LDLW 89 (656)
T ss_pred ccHHHHHHHHHHHccCCHHHHHHHHHHHhc-----cCCCCcHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHhh--HhHH
Confidence 488999999998866644 9999999987 444 4567777788888888 999999999998876554 4455
Q ss_pred HHHHHHHHh-CCChHHH----HHHHHhcC------CCCcchHHHHHHH---------HHhCCCchHHHHHHHHhHHCCCC
Q 008183 139 SALVHFYSR-FRSPDNA----KKVFDEIR------ERDVVCYGAMIVG---------FAQNSRLVDSLSVFADMRSSDVG 198 (575)
Q Consensus 139 ~~li~~~~~-~g~~~~A----~~~f~~m~------~~~~~~~~~li~~---------~~~~g~~~~A~~~~~~m~~~g~~ 198 (575)
..-++.--+ .|+...+ .+.|+-.. -.+-..|+..+.- |..+.+++...++|+++....+.
T Consensus 90 ~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~ 169 (656)
T KOG1914|consen 90 KLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMH 169 (656)
T ss_pred HHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccc
Confidence 555543332 2333332 22232221 1244456665542 44555677788888888753221
Q ss_pred c------CHHHHHHHHHHHH-------hcccHHHHHHHHHHHHH--hCCCCchhH---------------HHHHHHHHHc
Q 008183 199 S------TMYCVSGALRAAA-------ELAAMEQCRVIHGHAVV--SGLDRNVIV---------------GTGLIDGYGK 248 (575)
Q Consensus 199 p------~~~t~~~ll~~~~-------~~~~~~~a~~~~~~~~~--~g~~~~~~~---------------~~~li~~~~~ 248 (575)
- |-.+|-.-++... +...+..|+++++++.. .|+..+..+ |-.+|.---.
T Consensus 170 nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEks 249 (656)
T KOG1914|consen 170 NLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKS 249 (656)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhc
Confidence 1 2223322232221 23456667777776643 343322221 2222221111
Q ss_pred cCCH------H--HHHHHHhhhCC----CCChhh-HHHHH----HHHHHcCC-------hHHHHHHHHHHHHcCCCCCHH
Q 008183 249 AGIV------S--DARRVFDENLS----VLNSIA-WNAMM----AGYAQQGD-------QSTVLELFHLLEMRGFAPDEY 304 (575)
Q Consensus 249 ~g~~------~--~A~~~~~~~~~----~~~~~~-~~~li----~~~~~~g~-------~~~A~~l~~~m~~~g~~p~~~ 304 (575)
.+.- - ...=++++.+. .|++.- |...+ ..+...|+ -+++..+++.....-..-+..
T Consensus 250 NpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~ 329 (656)
T KOG1914|consen 250 NPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKL 329 (656)
T ss_pred CCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1100 0 00000111000 111100 00000 11222333 345556665554432233444
Q ss_pred HHHHHHHHHHh---cCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCC---CCC-CHHHHHHH
Q 008183 305 SFLAVLTALCN---AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMP---FEP-DAAVWRAL 377 (575)
Q Consensus 305 t~~~ll~a~~~---~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~p-~~~~~~~l 377 (575)
+|..+..---. .+..+....++++......++|+ -+|-.++..-.|..-++.|..+|.+.+ ..+ ++...+++
T Consensus 330 Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~ 408 (656)
T KOG1914|consen 330 LYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAAL 408 (656)
T ss_pred HHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHH
Confidence 44433322111 11245556666666555555665 367788888888899999999999883 344 67788888
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCCCccC
Q 008183 378 LSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKE 439 (575)
Q Consensus 378 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 439 (575)
+.-++ .+|.+.|.++|+--+..-++++..-...++.+...++-+.+..+|++....++.++
T Consensus 409 mEy~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ 469 (656)
T KOG1914|consen 409 MEYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSAD 469 (656)
T ss_pred HHHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChh
Confidence 87765 57889999999999988888877667788888999999999999999998866544
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.019 Score=55.12 Aligned_cols=128 Identities=13% Similarity=0.105 Sum_probs=67.1
Q ss_pred HHHHHHHHHcc-CCHHHHHHHHhhhCC----CCC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-----CCHH
Q 008183 239 GTGLIDGYGKA-GIVSDARRVFDENLS----VLN----SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFA-----PDEY 304 (575)
Q Consensus 239 ~~~li~~~~~~-g~~~~A~~~~~~~~~----~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-----p~~~ 304 (575)
+..+...|-+. |++++|.+.|+++.. ... ...+..+...+.+.|++++|+++|++....-.. ++..
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~ 196 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAK 196 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHH
Confidence 33444556565 677777777766333 111 123444566677888888888888777654221 2221
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CCCCC--hhHHHHHHHHHhc--cCChHHHHHHHHhCC
Q 008183 305 -SFLAVLTALCNAGLAGESEKWIERMKVRY-KLEPG--LEHYTCLISAMGR--AGRLEDAERIAMAMP 366 (575)
Q Consensus 305 -t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~~~p~--~~~~~~li~~~~~--~g~~~~A~~~~~~m~ 366 (575)
.|...+-.+...|++..|...++...... ++..+ ......|+.++-. ...+++|..-|+.+.
T Consensus 197 ~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 197 EYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 22233334555677878887777763221 22222 3445556666643 345666666676664
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.014 Score=52.60 Aligned_cols=180 Identities=14% Similarity=0.128 Sum_probs=94.1
Q ss_pred CCHHHHHHHHhhhCC-------CCCh-hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCHH
Q 008183 250 GIVSDARRVFDENLS-------VLNS-IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA-LCNAGLAG 320 (575)
Q Consensus 250 g~~~~A~~~~~~~~~-------~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~ 320 (575)
.+.++..+++.+++. .++. ..|.-++-+....|+.+.|...++++... + |...-...+=.. +-..|.++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchh
Confidence 455666666655222 1111 12333444455566666666666666554 2 333222111111 23356666
Q ss_pred HHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008183 321 ESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM--PFEPDAAVWRALLSFSAIHGKADMASKMGKRLI 398 (575)
Q Consensus 321 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 398 (575)
+|.++++.+..+. +.|..+|-.=+-..-..|+--+|.+-+.+. .+-.|...|.-|...|...|+++.|.-.+++++
T Consensus 104 ~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 6666666664331 223444444444444455555555544443 244566666666666666667777766666666
Q ss_pred hcCCCCchhHHHHHHHHHhCCC---chHHHHHHHHHhh
Q 008183 399 DINPYDDSAYVIVANVLSGVGR---WDEVAEVRKVMKD 433 (575)
Q Consensus 399 ~~~p~~~~~~~~l~~~~~~~g~---~~~a~~~~~~m~~ 433 (575)
=..|.++..+..+.+.+...|- .+-|.+++.+-.+
T Consensus 182 l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 182 LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 6666666666666666554443 3334455554443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00054 Score=49.85 Aligned_cols=64 Identities=19% Similarity=0.278 Sum_probs=57.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCC-CchHHHHHHHHHhh
Q 008183 370 DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVG-RWDEVAEVRKVMKD 433 (575)
Q Consensus 370 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 433 (575)
++.+|..+...+...|++++|+..|++.++.+|.++.+|..+..+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46788889999999999999999999999999999999999999999999 79999999887654
|
... |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.022 Score=54.75 Aligned_cols=210 Identities=15% Similarity=0.116 Sum_probs=112.0
Q ss_pred ChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCC---cC--HHHHHHHHHHHHhcccHHHHHHHH
Q 008183 150 SPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG---ST--MYCVSGALRAAAELAAMEQCRVIH 224 (575)
Q Consensus 150 ~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p~--~~t~~~ll~~~~~~~~~~~a~~~~ 224 (575)
++++|..+|++ ....|-..|++++|.+.|.+....-.+ +. ...|......+.+. +++.|.
T Consensus 30 ~~e~Aa~~y~~-----------Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai--- 94 (282)
T PF14938_consen 30 DYEEAADLYEK-----------AANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAI--- 94 (282)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHH---
T ss_pred CHHHHHHHHHH-----------HHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHH---
Confidence 66666666554 456677778888888777776331100 00 01122222222111 333333
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHc-CChHHHHHHHHHHHHc----CC
Q 008183 225 GHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQ-GDQSTVLELFHLLEMR----GF 299 (575)
Q Consensus 225 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~----g~ 299 (575)
..+...+..|.+.|++..|-+++.. +...|-.. |++++|++.|++..+. |
T Consensus 95 ------------~~~~~A~~~y~~~G~~~~aA~~~~~------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~- 149 (282)
T PF14938_consen 95 ------------ECYEKAIEIYREAGRFSQAAKCLKE------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG- 149 (282)
T ss_dssp ------------HHHHHHHHHHHHCT-HHHHHHHHHH------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-
T ss_pred ------------HHHHHHHHHHHhcCcHHHHHHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-
Confidence 3344456678888888888777777 55566666 8888888888876542 3
Q ss_pred CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC-----CCh-hHHHHHHHHHhccCChHHHHHHHHhC-CCCC-
Q 008183 300 APD--EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLE-----PGL-EHYTCLISAMGRAGRLEDAERIAMAM-PFEP- 369 (575)
Q Consensus 300 ~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~-----p~~-~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p- 369 (575)
.+. ..++..+...+.+.|++++|.++|++.... .+. .+. ..|-..+-.+...|++..|.+.|++. ...|
T Consensus 150 ~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~-~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 150 SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKK-CLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp -HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-CCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-hhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 211 245666777788888888888888877433 221 122 12333344556678888888888775 2222
Q ss_pred ---C--HHHHHHHHHHHHHc--CChHHHHHHHHHHHhc
Q 008183 370 ---D--AAVWRALLSFSAIH--GKADMASKMGKRLIDI 400 (575)
Q Consensus 370 ---~--~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~ 400 (575)
+ ......|+.++-.. ..++.+..-|+.+.++
T Consensus 229 F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~l 266 (282)
T PF14938_consen 229 FASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRL 266 (282)
T ss_dssp STTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS--
T ss_pred CCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCcc
Confidence 2 33455566665432 2244444444444333
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0031 Score=62.84 Aligned_cols=118 Identities=7% Similarity=-0.068 Sum_probs=66.5
Q ss_pred CCchhHHHHHHHHHHhCCChHHHHHHHHhcCC-C-----CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHH
Q 008183 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE-R-----DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVS 205 (575)
Q Consensus 132 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 205 (575)
+.+......+++......+++++..++..... | -..|..++|+.|.+.|..++++.++..=..-|+-||.+|++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 33444444455555555555555555544432 1 12234466666666666666666666666666666666666
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcc
Q 008183 206 GALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKA 249 (575)
Q Consensus 206 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 249 (575)
.+|..+.+.|++..|.++...|...+...+..++.--+.++.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 66666666666666666666665555445555554444444444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0032 Score=62.76 Aligned_cols=131 Identities=10% Similarity=-0.011 Sum_probs=102.8
Q ss_pred HHHHHhhCCCCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhh--CCCCchhHHHHHHHHHHhCCChHHHHHHHHh
Q 008183 83 IFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKL--SLHDKPFCGSALVHFYSRFRSPDNAKKVFDE 160 (575)
Q Consensus 83 ~~~~m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 160 (575)
++..|.+.-..+.+.+...+..++..+.... +++.+..++-..... ....-+.+..++|..|.+.|..+++..+++.
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~-~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n 128 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKD-DLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKN 128 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHh-HHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhC
Confidence 5555544321125667888888888888888 888888877776655 2233345667999999999999999999877
Q ss_pred cCC----CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhc
Q 008183 161 IRE----RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAEL 214 (575)
Q Consensus 161 m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 214 (575)
=.. ||..++|.||..+.+.|++..|.++..+|...+...+..|+...+.+|.+.
T Consensus 129 ~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 129 RLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 554 799999999999999999999999999998888888888888888887765
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00079 Score=48.28 Aligned_cols=58 Identities=19% Similarity=0.225 Sum_probs=45.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 377 LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 377 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
+...+...|++++|...++++++..|.++.++..+..++...|++++|...+++..+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3456677888888888888888888888888888888888888888888888877653
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0018 Score=64.33 Aligned_cols=102 Identities=13% Similarity=0.025 Sum_probs=84.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC
Q 008183 310 LTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGK 386 (575)
Q Consensus 310 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~ 386 (575)
...+...|+++.|...|.+... ..|+ ...|..+..+|.+.|++++|...+++. .+.| +...|..+..+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 4556778999999999998853 3554 678888888999999999999999887 5566 47788889999999999
Q ss_pred hHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 008183 387 ADMASKMGKRLIDINPYDDSAYVIVANV 414 (575)
Q Consensus 387 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 414 (575)
+++|...++++++++|.++.+...+..+
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999999988766555443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.012 Score=61.07 Aligned_cols=66 Identities=14% Similarity=0.150 Sum_probs=33.1
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCc
Q 008183 340 EHYTCLISAMGRAGRLEDAERIAMAM-PFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDD 405 (575)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 405 (575)
..|.++.......|++++|...+++. .+.|+...|..+...+...|+.++|...++++..++|.++
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 34444444444445555555555544 3444555555555555555555555555555555555444
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0039 Score=48.74 Aligned_cols=80 Identities=15% Similarity=0.217 Sum_probs=63.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHhcCCCCChhH
Q 008183 271 WNAMMAGYAQQGDQSTVLELFHLLEMRGF-APDEYSFLAVLTALCNAG--------LAGESEKWIERMKVRYKLEPGLEH 341 (575)
Q Consensus 271 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~m~~~~~~~p~~~~ 341 (575)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+..+.. ++-+...+++.| ...+++|+..+
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDi-L~~~lKP~~et 106 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDI-LSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHH-HHhccCCcHHH
Confidence 34456677777999999999999999999 999999999999887642 344567778888 45578888888
Q ss_pred HHHHHHHHhc
Q 008183 342 YTCLISAMGR 351 (575)
Q Consensus 342 ~~~li~~~~~ 351 (575)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 8888876654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.07 Score=54.47 Aligned_cols=230 Identities=13% Similarity=0.124 Sum_probs=117.5
Q ss_pred HHHHHHHHhhchhhHHHHHHH--HHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhC
Q 008183 102 LASLFKTCASLSHAFLFGLSL--HSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQN 179 (575)
Q Consensus 102 ~~~ll~~~~~~~~~~~~a~~~--~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~ 179 (575)
|+..=++|.+.+ ++..-+-+ ++.+.+.|-.|+... +.+.++-.|.+.+|.++|. ++
T Consensus 601 f~~ARkAY~rVR-dl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk------------------~~ 658 (1081)
T KOG1538|consen 601 FETARKAYIRVR-DLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFK------------------RS 658 (1081)
T ss_pred hHHHHHHHHHHh-ccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHH------------------Hc
Confidence 444445555555 44333332 233455565566543 3455667788888888875 45
Q ss_pred CCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHH
Q 008183 180 SRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259 (575)
Q Consensus 180 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 259 (575)
|.-..|+++|..|+-- -...-+...|..++-+.+.+.-.+. ..++.--.+...++...|+.++|..+.
T Consensus 659 G~enRAlEmyTDlRMF----------D~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~ 726 (1081)
T KOG1538|consen 659 GHENRALEMYTDLRMF----------DYAQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEIC 726 (1081)
T ss_pred CchhhHHHHHHHHHHH----------HHHHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhh
Confidence 6667777777776431 1222333444444443333322211 111111123455666677777777665
Q ss_pred hhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCh
Q 008183 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGL 339 (575)
Q Consensus 260 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 339 (575)
-+ +|-.+-++++-+++... +..+...+..-+-+...+..|-++|..|- +
T Consensus 727 ~d-------------------~gW~d~lidI~rkld~~----ere~l~~~a~ylk~l~~~gLAaeIF~k~g-D------- 775 (1081)
T KOG1538|consen 727 GD-------------------HGWVDMLIDIARKLDKA----EREPLLLCATYLKKLDSPGLAAEIFLKMG-D------- 775 (1081)
T ss_pred hc-------------------ccHHHHHHHHHhhcchh----hhhHHHHHHHHHhhccccchHHHHHHHhc-c-------
Confidence 44 22233333333333222 33344444444445556666777776661 1
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHhCC-CCCCHHH-H----------HHHHHHHHHcCChHHHHHHHHHHH
Q 008183 340 EHYTCLISAMGRAGRLEDAERIAMAMP-FEPDAAV-W----------RALLSFSAIHGKADMASKMGKRLI 398 (575)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~-~----------~~ll~~~~~~g~~~~a~~~~~~~~ 398 (575)
...++++....+++.+|..+-++.| +.||+.. | .-.-.+|.+.|+..+|.++++++.
T Consensus 776 --~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 776 --LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred --HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 1356666777777777777777764 3344321 1 112234555566666666666654
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0096 Score=52.45 Aligned_cols=130 Identities=15% Similarity=0.176 Sum_probs=85.5
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHH
Q 008183 267 NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPD--EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYT 343 (575)
Q Consensus 267 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~ 343 (575)
....+..+...+...|++++|...|++..+....|+ ...+..+...+.+.|++++|...+.+... ..|+ ...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHH
Confidence 445667777778888888888888888876543332 35677777778888888888888877643 3443 45556
Q ss_pred HHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCC
Q 008183 344 CLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGR 420 (575)
Q Consensus 344 ~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 420 (575)
.+...|...|+...+..-++.. ...+++|.++++++.+.+|++ |..++..+...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 6666676666665554332221 112577888888888888866 5555555555544
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0029 Score=55.85 Aligned_cols=91 Identities=14% Similarity=0.188 Sum_probs=69.6
Q ss_pred CCCChhhHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----------------CCHHHH
Q 008183 264 SVLNSIAWNAMMAGYAQQ-----GDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA----------------GLAGES 322 (575)
Q Consensus 264 ~~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~----------------g~~~~a 322 (575)
..+|-.+|..++..|.+. |..+=....++.|.+-|+.-|..+|+.||+.+-+. .+.+-|
T Consensus 43 ~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~ 122 (228)
T PF06239_consen 43 QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECA 122 (228)
T ss_pred ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHH
Confidence 356667777777776643 66676777788888888888889999888877542 245678
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHhccCCh
Q 008183 323 EKWIERMKVRYKLEPGLEHYTCLISAMGRAGRL 355 (575)
Q Consensus 323 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 355 (575)
.+++++| +.+|+-||.+++..|++.+++.+..
T Consensus 123 i~lL~qM-E~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 123 IDLLEQM-ENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHHHH-HHcCCCCcHHHHHHHHHHhccccHH
Confidence 8888888 7888888888888888888877653
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.42 Score=51.11 Aligned_cols=403 Identities=10% Similarity=0.100 Sum_probs=210.7
Q ss_pred ccHHHHHHHHHhhCCCcccHHHHHHHH--hHcCCChHHHHHHHccCC---CCChhhHHHHHHHHhcCch---HHHHHHHH
Q 008183 16 TDPRIVHARALKSSQADRSIYNNLITN--YSKSNLLSYSLRLFNHIP---SPNIVSWTALISAHSNSPL---SLNIFLSM 87 (575)
Q Consensus 16 ~~~~~~~~~~~~~g~~~~~~~~~li~~--~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~---a~~~~~~m 87 (575)
..|.+..+.+.+.-+ + ..|...+.+ +.+.|+.++|..+++... ..|..+...+-..|.+.++ |+.+|++.
T Consensus 26 kkal~~~~kllkk~P-n-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~ 103 (932)
T KOG2053|consen 26 KKALAKLGKLLKKHP-N-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERA 103 (932)
T ss_pred HHHHHHHHHHHHHCC-C-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 344444444444322 2 223333333 346788888888887664 3466777777778877777 88888888
Q ss_pred hhCCCCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCC----------ChHHHHHH
Q 008183 88 LRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFR----------SPDNAKKV 157 (575)
Q Consensus 88 ~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----------~~~~A~~~ 157 (575)
.. ..|+..-...+..++.+.+ ++..-.++--++.+ .++.+++.+=++++.+.+.- -+.-|.+.
T Consensus 104 ~~-----~~P~eell~~lFmayvR~~-~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 104 NQ-----KYPSEELLYHLFMAYVREK-SYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred Hh-----hCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHH
Confidence 77 5677778888888888888 77666655555555 34555555555565555432 12345666
Q ss_pred HHhcCCCC--cch---HHHHHHHHHhCCCchHHHHHH-HHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q 008183 158 FDEIRERD--VVC---YGAMIVGFAQNSRLVDSLSVF-ADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSG 231 (575)
Q Consensus 158 f~~m~~~~--~~~---~~~li~~~~~~g~~~~A~~~~-~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 231 (575)
++.+.+.+ ..+ .-.-...+-..|.+++|++++ ....+.-...+...-+--+..+...+++.+..++-.+++..|
T Consensus 177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 66665533 111 111122334577788888888 333333333444555566667777788888888888887776
Q ss_pred CCCchhHHHHHHHHHH----------------ccCCHHHHHHHHhhhCCCCChhhHHHHHHHHH---HcCChHHHHHHHH
Q 008183 232 LDRNVIVGTGLIDGYG----------------KAGIVSDARRVFDENLSVLNSIAWNAMMAGYA---QQGDQSTVLELFH 292 (575)
Q Consensus 232 ~~~~~~~~~~li~~~~----------------~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~---~~g~~~~A~~l~~ 292 (575)
-. | |...++.+. ..+.++...+..++.+....-..|-+-+.++. .-|+.+++...|-
T Consensus 257 ~D-d---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~ 332 (932)
T KOG2053|consen 257 ND-D---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYF 332 (932)
T ss_pred Cc-c---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHH
Confidence 22 2 333333222 22233333333333222212223333333333 3466666554442
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChh-------HHHHHHHHHhccCCh-----HHHHH
Q 008183 293 LLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLE-------HYTCLISAMGRAGRL-----EDAER 360 (575)
Q Consensus 293 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-------~~~~li~~~~~~g~~-----~~A~~ 360 (575)
+- -|-.| .|..=+..|...=..+.-..++..... -.++.. -+.+.+..-.-.|.+ +.-..
T Consensus 333 ~k--fg~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~---~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a 404 (932)
T KOG2053|consen 333 KK--FGDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVL---ADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILA 404 (932)
T ss_pred HH--hCCCc---HhHhhHHHhhccCCHHHHHHHHHHhhc---cCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHH
Confidence 21 12222 111111111111122222222222210 011100 011111111111211 11111
Q ss_pred HHHhC------C------CCCC---------HHHHHHHHHHHHHcCCh---HHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 008183 361 IAMAM------P------FEPD---------AAVWRALLSFSAIHGKA---DMASKMGKRLIDINPYDDSAYVIVANVLS 416 (575)
Q Consensus 361 ~~~~m------~------~~p~---------~~~~~~ll~~~~~~g~~---~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 416 (575)
++++. | +-|. ..+-+.|+..+.+.++. -+|.-+++......|.|..+-..|+.+|.
T Consensus 405 ~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~ 484 (932)
T KOG2053|consen 405 YVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYS 484 (932)
T ss_pred HHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHH
Confidence 11111 1 1121 22456777888887764 45566667777777888888888889998
Q ss_pred hCCCchHHHHHHHHHhhCCCccC
Q 008183 417 GVGRWDEVAEVRKVMKDRRVRKE 439 (575)
Q Consensus 417 ~~g~~~~a~~~~~~m~~~~~~~~ 439 (575)
-.|-+..|.++++.|.-+.|..+
T Consensus 485 ~lGa~p~a~~~y~tLdIK~IQ~D 507 (932)
T KOG2053|consen 485 YLGAFPDAYELYKTLDIKNIQTD 507 (932)
T ss_pred HhcCChhHHHHHHhcchHHhhhc
Confidence 88999999888888876666544
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.019 Score=54.98 Aligned_cols=134 Identities=13% Similarity=0.229 Sum_probs=97.2
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 008183 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRG-FAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLIS 347 (575)
Q Consensus 269 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 347 (575)
.+|-.++...-+.+..+.|..+|.+..+.+ ...+.....+++. +...++.+.|..+|+.....+ ..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 357777888888888888888888887543 2333333333332 333577788999999886653 456788889999
Q ss_pred HHhccCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCc
Q 008183 348 AMGRAGRLEDAERIAMAM-PFEPD----AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDD 405 (575)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 405 (575)
.+.+.|+.+.|..+|++. ..-|. ...|...+.--.+.|+++...++.+++.+.-|.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999987 32333 35899999999999999999999999998877643
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.005 Score=54.24 Aligned_cols=81 Identities=19% Similarity=0.127 Sum_probs=56.4
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 008183 340 EHYTCLISAMGRAGRLEDAERIAMAM-PFEPD----AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANV 414 (575)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 414 (575)
..+..+...+...|++++|...|++. ...|+ ...|..+...+...|++++|...++++++..|.+...+..+..+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 44555666666677777777776655 22222 35677777777888888888888888888888777777777777
Q ss_pred HHhCCC
Q 008183 415 LSGVGR 420 (575)
Q Consensus 415 ~~~~g~ 420 (575)
|...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 777665
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0039 Score=54.74 Aligned_cols=93 Identities=13% Similarity=0.019 Sum_probs=72.9
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHH
Q 008183 339 LEHYTCLISAMGRAGRLEDAERIAMAM-PFEPD----AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVAN 413 (575)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 413 (575)
...|..+...+...|++++|...|++. .+.|+ ..+|..+...+...|++++|...++++++..|.....+..+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 456667777777889999998888876 23332 3578888899999999999999999999999888888888888
Q ss_pred HHH-------hCCCchHHHHHHHHH
Q 008183 414 VLS-------GVGRWDEVAEVRKVM 431 (575)
Q Consensus 414 ~~~-------~~g~~~~a~~~~~~m 431 (575)
+|. ..|++++|...+++-
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 887 778888766665543
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0082 Score=59.63 Aligned_cols=101 Identities=12% Similarity=0.037 Sum_probs=80.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhcc
Q 008183 274 MMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRA 352 (575)
Q Consensus 274 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~ 352 (575)
-...+...|++++|++.|++..+... -+...|..+..++...|++++|...++.... +.|+ ...|..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHh
Confidence 34567789999999999999998643 3667788888899999999999999998843 4564 67888899999999
Q ss_pred CChHHHHHHHHhC-CCCCCHHHHHHHH
Q 008183 353 GRLEDAERIAMAM-PFEPDAAVWRALL 378 (575)
Q Consensus 353 g~~~~A~~~~~~m-~~~p~~~~~~~ll 378 (575)
|++++|...|++. .+.|+......++
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 9999999999887 5666644444444
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.002 Score=46.10 Aligned_cols=61 Identities=20% Similarity=0.294 Sum_probs=49.0
Q ss_pred HHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCc
Q 008183 345 LISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDD 405 (575)
Q Consensus 345 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 405 (575)
+...+.+.|++++|.+.|++. ...| +...|..+...+...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 445677889999999999887 4456 477888888999999999999999999999988764
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.00085 Score=48.59 Aligned_cols=53 Identities=21% Similarity=0.323 Sum_probs=43.2
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 382 AIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 382 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
...|++++|.+.++++.+..|.+..++..++.+|.+.|++++|..+++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45688888888888888888888888888888888888888888888877654
|
... |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0078 Score=46.12 Aligned_cols=22 Identities=5% Similarity=0.001 Sum_probs=9.6
Q ss_pred HHHHHHhCCCchHHHHHHHHhH
Q 008183 172 MIVGFAQNSRLVDSLSVFADMR 193 (575)
Q Consensus 172 li~~~~~~g~~~~A~~~~~~m~ 193 (575)
+...+...|++++|+..|++..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~ 27 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKAL 27 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHH
Confidence 3334444444444444444443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.018 Score=55.17 Aligned_cols=127 Identities=13% Similarity=0.091 Sum_probs=53.4
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHH-HHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 008183 168 CYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRA-AAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGY 246 (575)
Q Consensus 168 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 246 (575)
+|..++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+..++. ++.+...+...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 34444444444444555555555554321 1112222222222 11233444455555555443 344555555555555
Q ss_pred HccCCHHHHHHHHhhhCCC-C----ChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008183 247 GKAGIVSDARRVFDENLSV-L----NSIAWNAMMAGYAQQGDQSTVLELFHLLEM 296 (575)
Q Consensus 247 ~~~g~~~~A~~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 296 (575)
.+.|+.+.|+.+|++.+.. + ....|...+.-=.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555553331 1 112344444444444444444444444433
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.42 Score=47.12 Aligned_cols=72 Identities=17% Similarity=0.192 Sum_probs=56.1
Q ss_pred HHHHhCCCCC----CHHHHHHHHHH--HHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHh
Q 008183 360 RIAMAMPFEP----DAAVWRALLSF--SAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432 (575)
Q Consensus 360 ~~~~~m~~~p----~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 432 (575)
.++++.++.| +...-|.|..| +..+|++.++.-.-..+.+..| ++.+|..++-......++++|..++..+.
T Consensus 445 ~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 445 DFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 3445556555 33444555544 4568999999999999999999 88899999999999999999999998764
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.012 Score=54.72 Aligned_cols=101 Identities=17% Similarity=0.139 Sum_probs=86.2
Q ss_pred CC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc---CChHHHHHHHHHHHhcCCCCchhHH
Q 008183 336 EP-GLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIH---GKADMASKMGKRLIDINPYDDSAYV 409 (575)
Q Consensus 336 ~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~p~~~~~~~ 409 (575)
.| |...|-.|...|.+.|+++.|..-|.+. .+.| ++..+..+..++... .+..++..++++++..+|.|..+..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 45 5899999999999999999999999887 4444 477777777666543 3467889999999999999999999
Q ss_pred HHHHHHHhCCCchHHHHHHHHHhhCCC
Q 008183 410 IVANVLSGVGRWDEVAEVRKVMKDRRV 436 (575)
Q Consensus 410 ~l~~~~~~~g~~~~a~~~~~~m~~~~~ 436 (575)
.|...+...|++.+|...++.|.+...
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 999999999999999999999998654
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.38 Score=46.43 Aligned_cols=283 Identities=17% Similarity=0.124 Sum_probs=178.0
Q ss_pred HHHHHHHHH--hCCChHHHHHHHHhcCC---CCcchHHHHHHH--HHhCCCchHHHHHHHHhHHCCCCcCHH--HHHHHH
Q 008183 138 GSALVHFYS--RFRSPDNAKKVFDEIRE---RDVVCYGAMIVG--FAQNSRLVDSLSVFADMRSSDVGSTMY--CVSGAL 208 (575)
Q Consensus 138 ~~~li~~~~--~~g~~~~A~~~f~~m~~---~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll 208 (575)
|.+|-.++. -.|+-..|.++-.+... .|....--++.+ -.-.|+++.|.+-|+.|... |... -+..+.
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLy 161 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLY 161 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHH
Confidence 455555444 45788888887765442 455555555543 34569999999999999652 2221 223333
Q ss_pred HHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC----CCChh--hHHHHHHHHH---
Q 008183 209 RAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS----VLNSI--AWNAMMAGYA--- 279 (575)
Q Consensus 209 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~--~~~~li~~~~--- 279 (575)
-...+.|+.+.|.++-+..-..- +.-.....+.+...+..|+++.|+++++.... ++++. .-..|+.+-+
T Consensus 162 leAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ 240 (531)
T COG3898 162 LEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL 240 (531)
T ss_pred HHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence 34456788888888777665542 23356778889999999999999999986222 34442 2233444322
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHH
Q 008183 280 QQGDQSTVLELFHLLEMRGFAPDEYSF-LAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDA 358 (575)
Q Consensus 280 ~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 358 (575)
-.-++..|...-.+..+ +.||.+-- ..-..++.+.|++.++-.+++.+ +...|....+...+ +.+.|+....
T Consensus 241 ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~a---WK~ePHP~ia~lY~--~ar~gdta~d 313 (531)
T COG3898 241 LDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETA---WKAEPHPDIALLYV--RARSGDTALD 313 (531)
T ss_pred hcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHH---HhcCCChHHHHHHH--HhcCCCcHHH
Confidence 23345566655444443 55665432 23456778899999999999876 33455554443333 4455653222
Q ss_pred --HH--HHHhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhC-CCchHHHHHHHHHh
Q 008183 359 --ER--IAMAMPFEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGV-GRWDEVAEVRKVMK 432 (575)
Q Consensus 359 --~~--~~~~m~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~ 432 (575)
.+ -++. ++|| ..+--.+..+-...|++..|..-.+......|. .+.|..|.++-... |+-.++...+.+-.
T Consensus 314 RlkRa~~L~s--lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 314 RLKRAKKLES--LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred HHHHHHHHHh--cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence 11 1233 3554 677777788888899999998888888888774 46788888876554 88888887776655
Q ss_pred hC
Q 008183 433 DR 434 (575)
Q Consensus 433 ~~ 434 (575)
..
T Consensus 391 ~A 392 (531)
T COG3898 391 KA 392 (531)
T ss_pred cC
Confidence 43
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0023 Score=48.64 Aligned_cols=80 Identities=16% Similarity=0.255 Sum_probs=46.6
Q ss_pred cCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHH
Q 008183 281 QGDQSTVLELFHLLEMRGF-APDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDA 358 (575)
Q Consensus 281 ~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A 358 (575)
.|+++.|+.+|+++.+... .|+...+..+..++.+.|++++|..+++.. ...|+ ....-.+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~----~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL----KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH----THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 5677777777777766533 223444444667777777777777777652 22232 23333446666777777777
Q ss_pred HHHHHh
Q 008183 359 ERIAMA 364 (575)
Q Consensus 359 ~~~~~~ 364 (575)
.+.|++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 776654
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0084 Score=55.52 Aligned_cols=92 Identities=20% Similarity=0.210 Sum_probs=63.0
Q ss_pred HHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHH
Q 008183 313 LCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM-PFEPD-AAVWRALLSFSAIHGKADM 389 (575)
Q Consensus 313 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~ 389 (575)
..+.+++++|...|.+.+ .+.|+ ...|..=..+|++.|.++.|.+-.+.. .+.|. ..+|..|-.+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 345577777777777653 34554 445555566777777777777655544 45564 6777788888888888888
Q ss_pred HHHHHHHHHhcCCCCchh
Q 008183 390 ASKMGKRLIDINPYDDSA 407 (575)
Q Consensus 390 a~~~~~~~~~~~p~~~~~ 407 (575)
|++.|++.++++|.+...
T Consensus 168 A~~aykKaLeldP~Ne~~ 185 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESY 185 (304)
T ss_pred HHHHHHhhhccCCCcHHH
Confidence 888888888888877643
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0027 Score=58.66 Aligned_cols=86 Identities=16% Similarity=0.197 Sum_probs=77.6
Q ss_pred HHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHH
Q 008183 348 AMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVA 425 (575)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 425 (575)
-+.+.+++++|...|.+. .+.| |++-|..=..+|.+.|.++.|.+-.+..+.++|....+|..|..+|...|++++|.
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 356789999999999887 6776 68888888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhh
Q 008183 426 EVRKVMKD 433 (575)
Q Consensus 426 ~~~~~m~~ 433 (575)
+.|++..+
T Consensus 170 ~aykKaLe 177 (304)
T KOG0553|consen 170 EAYKKALE 177 (304)
T ss_pred HHHHhhhc
Confidence 99887654
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.21 Score=46.58 Aligned_cols=53 Identities=8% Similarity=-0.061 Sum_probs=33.4
Q ss_pred HHHHhCCChHHHHHHHHhcCC--CCc-ch---HHHHHHHHHhCCCchHHHHHHHHhHHC
Q 008183 143 HFYSRFRSPDNAKKVFDEIRE--RDV-VC---YGAMIVGFAQNSRLVDSLSVFADMRSS 195 (575)
Q Consensus 143 ~~~~~~g~~~~A~~~f~~m~~--~~~-~~---~~~li~~~~~~g~~~~A~~~~~~m~~~ 195 (575)
..+.+.|++++|.+.|+.+.. |+. .. .-.+..+|.+.+++++|...|++..+.
T Consensus 40 ~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 40 QQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 334456777777777777754 222 11 123456667777788888777777664
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0028 Score=46.63 Aligned_cols=57 Identities=18% Similarity=0.235 Sum_probs=49.0
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCC
Q 008183 379 SFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435 (575)
Q Consensus 379 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 435 (575)
..|.+.++++.|.++++++++.+|.++..+.....+|.+.|++++|...++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 567788889999999999999999888888889999999999999999988887654
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0079 Score=53.23 Aligned_cols=98 Identities=11% Similarity=0.106 Sum_probs=71.7
Q ss_pred HHHHHHhc--CCCCcchHHHHHHHHHhC-----CCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhc------------
Q 008183 154 AKKVFDEI--RERDVVCYGAMIVGFAQN-----SRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAEL------------ 214 (575)
Q Consensus 154 A~~~f~~m--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~------------ 214 (575)
-...|+.. ..+|..+|..++..|.+. |..+=....+..|.+-|+.-|..+|+.||+.+=+.
T Consensus 33 ~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F 112 (228)
T PF06239_consen 33 HEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEF 112 (228)
T ss_pred hHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHh
Confidence 34455555 346777777777777654 55566666777788888888888888888765331
Q ss_pred ----ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCC
Q 008183 215 ----AAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251 (575)
Q Consensus 215 ----~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 251 (575)
.+-+.|.+++++|...|+-||..++..|++.+++.+.
T Consensus 113 ~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 MHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 3556788899999999999999999999998887664
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0099 Score=50.39 Aligned_cols=89 Identities=9% Similarity=0.070 Sum_probs=76.0
Q ss_pred HHHHHhccCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCch
Q 008183 345 LISAMGRAGRLEDAERIAMAMP-FEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWD 422 (575)
Q Consensus 345 li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 422 (575)
...-+-..|++++|..+|+-+- ..| +..-|..|...+...++++.|...|.....+++.|+..+......|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 3344567899999999998772 233 56678888888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 008183 423 EVAEVRKVMKD 433 (575)
Q Consensus 423 ~a~~~~~~m~~ 433 (575)
.|+..|+...+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999998776
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.01 Score=57.12 Aligned_cols=257 Identities=12% Similarity=0.025 Sum_probs=148.3
Q ss_pred HHhCCCchHHHHHHHHhHHCCCC---cCHHHHHHHHHHHHhcccHHHHHHHHHHHH--H--hCCC-CchhHHHHHHHHHH
Q 008183 176 FAQNSRLVDSLSVFADMRSSDVG---STMYCVSGALRAAAELAAMEQCRVIHGHAV--V--SGLD-RNVIVGTGLIDGYG 247 (575)
Q Consensus 176 ~~~~g~~~~A~~~~~~m~~~g~~---p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~--~--~g~~-~~~~~~~~li~~~~ 247 (575)
+++.|+....+.+|+...+.|.. .=..+|.-+-++|.-.+++++|.++|..=+ . .|-. -.......|.+.+-
T Consensus 27 Lck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlK 106 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLK 106 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhh
Confidence 56667777777777776665522 112345555666666677777777654321 1 1100 01122223444444
Q ss_pred ccCCHHHHHHHHhhhCC--------CCChhhHHHHHHHHHHcCC--------------------hHHHHHHHHHH----H
Q 008183 248 KAGIVSDARRVFDENLS--------VLNSIAWNAMMAGYAQQGD--------------------QSTVLELFHLL----E 295 (575)
Q Consensus 248 ~~g~~~~A~~~~~~~~~--------~~~~~~~~~li~~~~~~g~--------------------~~~A~~l~~~m----~ 295 (575)
-.|.+++|.-.-.+-+. ......+..+...|...|+ ++.|.+.|.+= .
T Consensus 107 v~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~ 186 (639)
T KOG1130|consen 107 VKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSE 186 (639)
T ss_pred hhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556655543322111 0112334445555544442 23444444332 2
Q ss_pred HcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH---HHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-----
Q 008183 296 MRGFA-PDEYSFLAVLTALCNAGLAGESEKWIERM---KVRYKLEP-GLEHYTCLISAMGRAGRLEDAERIAMAM----- 365 (575)
Q Consensus 296 ~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m---~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m----- 365 (575)
+.|-. .-...|..|-..|.-.|+++.|...++.- ..++|-.. ....+..|...+.-.|+++.|.+.|+..
T Consensus 187 ~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAi 266 (639)
T KOG1130|consen 187 KLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAI 266 (639)
T ss_pred HhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHH
Confidence 22211 11234666666666778999998876532 22333222 2467778888888899999999888765
Q ss_pred --C-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh----cC--CCCchhHHHHHHHHHhCCCchHHHHHHHHHh
Q 008183 366 --P-FEPDAAVWRALLSFSAIHGKADMASKMGKRLID----IN--PYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432 (575)
Q Consensus 366 --~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 432 (575)
+ -.....+.-+|...|.-..+++.|+.++.+-+. ++ .....+|.+|.++|...|..++|....+.-.
T Consensus 267 elg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 267 ELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 2 122355667888888888889999988877553 22 2244688999999999999999988766544
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.57 Score=45.50 Aligned_cols=110 Identities=15% Similarity=0.141 Sum_probs=84.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 008183 238 VGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317 (575)
Q Consensus 238 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 317 (575)
+.+.-|.-+...|+...|.++..+ ..-||-.-|-..+.+|+..++|++-.++... .- .++-|..++.+|...|
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~-Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----kK--sPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKE-FKVPDKRFWWLKIKALAENKDWDELEKFAKS----KK--SPIGYEPFVEACLKYG 251 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHH-cCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CC--CCCChHHHHHHHHHCC
Confidence 344456666778899999999888 8889999999999999999999887775432 12 3477888899999999
Q ss_pred CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC
Q 008183 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM 365 (575)
Q Consensus 318 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (575)
...+|..+...+ .+..-+.+|.++|++.+|.+.--+.
T Consensus 252 ~~~eA~~yI~k~-----------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 252 NKKEASKYIPKI-----------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CHHHHHHHHHhC-----------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 999988877643 2256678889999999987765543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.045 Score=52.93 Aligned_cols=160 Identities=12% Similarity=0.031 Sum_probs=112.3
Q ss_pred hhHHHH-HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHhcCCCCChhHHHH-
Q 008183 269 IAWNAM-MAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA--LCNAGLAGESEKWIERMKVRYKLEPGLEHYTC- 344 (575)
Q Consensus 269 ~~~~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a--~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~- 344 (575)
.+|-.+ ..++...|+.++|.+.-....+... ...+...+++ +.-.++.+.+...|++-. .+.|+-..-..
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~---~n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~ 242 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILKLDA---TNAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSA 242 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHhccc---chhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhH
Confidence 344433 2356778888888887766665421 1122223332 334677888888887552 45565322111
Q ss_pred ------------HHHHHhccCChHHHHHHHHhC-C-----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCch
Q 008183 345 ------------LISAMGRAGRLEDAERIAMAM-P-----FEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDS 406 (575)
Q Consensus 345 ------------li~~~~~~g~~~~A~~~~~~m-~-----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 406 (575)
=.....+.|++.+|.+.|.+. . .+|++..|.....+..+.|+.++|+.-.++..+++|.-..
T Consensus 243 ~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syik 322 (486)
T KOG0550|consen 243 SMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIK 322 (486)
T ss_pred hhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHH
Confidence 122345779999999999877 3 3455667777778888999999999999999999998888
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 407 AYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 407 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
+|..-.+++...++|++|.+-+++..+.
T Consensus 323 all~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 323 ALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8888889999999999999999887654
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.72 E-value=1 Score=47.36 Aligned_cols=315 Identities=14% Similarity=0.067 Sum_probs=177.5
Q ss_pred cCCChhhHH-----HHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCCh---HHHHHHHHhcCC--C
Q 008183 95 FLPNQRTLA-----SLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP---DNAKKVFDEIRE--R 164 (575)
Q Consensus 95 ~~p~~~t~~-----~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~f~~m~~--~ 164 (575)
++.+..-|. .++..+...+ .+..|.|+-..+-..-... ..++.....-+.+..+. +-+..+=+++.. .
T Consensus 428 IplT~~qy~~l~~~~vi~Rl~~r~-~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~ 505 (829)
T KOG2280|consen 428 IPLTHEQYRHLSEEVVIDRLVDRH-LYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLT 505 (829)
T ss_pred ccccHHHHhhhchhhhhHHHHhcc-hhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccCC
Confidence 665555444 3556666666 7777777766653222122 56777777777776432 334444445554 4
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCC----cCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC---------
Q 008183 165 DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG----STMYCVSGALRAAAELAAMEQCRVIHGHAVVSG--------- 231 (575)
Q Consensus 165 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g--------- 231 (575)
.-++|..+.+--.+.|+.+-|..+++.=...+.. .+..-+...+.-+...|+.+...+++-++.+.-
T Consensus 506 ~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l 585 (829)
T KOG2280|consen 506 PGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTL 585 (829)
T ss_pred CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 6678888888888899999998887653332211 122345566777778888887777766654431
Q ss_pred --CCCchhHHHHHHH---------HHHccCCHHHHHHHHhh-hC-C----CCChhhHHHHHHHHHHcCChH---------
Q 008183 232 --LDRNVIVGTGLID---------GYGKAGIVSDARRVFDE-NL-S----VLNSIAWNAMMAGYAQQGDQS--------- 285 (575)
Q Consensus 232 --~~~~~~~~~~li~---------~~~~~g~~~~A~~~~~~-~~-~----~~~~~~~~~li~~~~~~g~~~--------- 285 (575)
.+.....|.-++. .|-. ++-..+...|.- .. . .+-..........+.+.....
T Consensus 586 ~~~p~a~~lY~~~~r~~~~~~l~d~y~q-~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~ 664 (829)
T KOG2280|consen 586 RNQPLALSLYRQFMRHQDRATLYDFYNQ-DDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQ 664 (829)
T ss_pred HhchhhhHHHHHHHHhhchhhhhhhhhc-ccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 1111122221111 1111 111111111110 00 0 011111222233344433311
Q ss_pred -HHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHH
Q 008183 286 -TVLELFHLLEM-RGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAM 363 (575)
Q Consensus 286 -~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 363 (575)
+-+.+.+.+.. .|..-...|.+--+.-+...|.-.+|.++-.+.+ -||-..|-.=+.+++..+++++-+++-+
T Consensus 665 ~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAk 739 (829)
T KOG2280|consen 665 MKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAK 739 (829)
T ss_pred HHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHh
Confidence 11222222221 2333444556666666777788888888765552 4787888778888888888888888777
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHH
Q 008183 364 AMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVR 428 (575)
Q Consensus 364 ~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 428 (575)
.+. .+.-|.-+..+|.+.|+.++|.+++-+...+. -...+|.+.|++.+|.++-
T Consensus 740 skk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l~--------ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 740 SKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGGLQ--------EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred ccC---CCCCchhHHHHHHhcccHHHHhhhhhccCChH--------HHHHHHHHhccHHHHHHHH
Confidence 663 14556667888888888888888776643221 4678888888888887764
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.05 Score=45.98 Aligned_cols=94 Identities=7% Similarity=-0.106 Sum_probs=61.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHhhhC--CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 008183 239 GTGLIDGYGKAGIVSDARRVFDENL--SVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316 (575)
Q Consensus 239 ~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 316 (575)
.-.+..-+...|++++|.++|+-.. .+.+..-|-.|...+-..|++++|+..|.......+ -|...+-.+..++...
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHc
Confidence 3344455566777777777777522 244556677777777777777777777777766543 3556666666777777
Q ss_pred CCHHHHHHHHHHHHHhc
Q 008183 317 GLAGESEKWIERMKVRY 333 (575)
Q Consensus 317 g~~~~a~~~~~~m~~~~ 333 (575)
|+.+.|++.|+......
T Consensus 117 G~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 117 DNVCYAIKALKAVVRIC 133 (157)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 77777777777664443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.078 Score=55.24 Aligned_cols=134 Identities=16% Similarity=0.114 Sum_probs=93.4
Q ss_pred CCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhcc--------CChHHHHHHHH
Q 008183 298 GFAPDEYSFLAVLTALCNA-----GLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRA--------GRLEDAERIAM 363 (575)
Q Consensus 298 g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~--------g~~~~A~~~~~ 363 (575)
+.+.|...|...+.+.... +..+.|..+|++.. .+.|+ ...|..+..+|... .++..+.+..+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai---~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEIL---KSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH---HhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 3456667777777775432 23667888887764 34676 44454443333221 12334444444
Q ss_pred hC---C-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCC
Q 008183 364 AM---P-FEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435 (575)
Q Consensus 364 ~m---~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 435 (575)
+. + ...+...|..+.-.....|++++|...++++++++| +..+|..+...|...|+.++|...+++....+
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 42 1 233567888887777788999999999999999999 56799999999999999999999998876544
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.21 Score=51.69 Aligned_cols=249 Identities=12% Similarity=0.037 Sum_probs=152.1
Q ss_pred hHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHH-CCCCcCH--------HHHHHHHHHHHhcccHHHHH
Q 008183 151 PDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS-SDVGSTM--------YCVSGALRAAAELAAMEQCR 221 (575)
Q Consensus 151 ~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~--------~t~~~ll~~~~~~~~~~~a~ 221 (575)
+++|.+..+. .|....|..+...-.+.-.++-|...|-+... .|++.-. ..-..-+ .+--|.+++|+
T Consensus 679 ledA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei--~~~~g~feeae 754 (1189)
T KOG2041|consen 679 LEDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEI--SAFYGEFEEAE 754 (1189)
T ss_pred hHHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhH--hhhhcchhHhh
Confidence 3444444443 24455676666655555555666655554422 1221110 0000111 12247888888
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC-CC----ChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008183 222 VIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS-VL----NSIAWNAMMAGYAQQGDQSTVLELFHLLEM 296 (575)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 296 (575)
++|-.+-+.. ..|.++.+.|++-...++++. -. .. -..+|+.+...++....|++|.+.|..-..
T Consensus 755 k~yld~drrD---------LAielr~klgDwfrV~qL~r~-g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~ 824 (1189)
T KOG2041|consen 755 KLYLDADRRD---------LAIELRKKLGDWFRVYQLIRN-GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD 824 (1189)
T ss_pred hhhhccchhh---------hhHHHHHhhhhHHHHHHHHHc-cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 8887765543 357888899999999988876 33 11 135788888888888888888888765322
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHH
Q 008183 297 RGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376 (575)
Q Consensus 297 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ 376 (575)
. ...+.++.+..++++-+.+...+ +-+....-.+.+++.+.|.-++|.+.|-+-+ .|. .
T Consensus 825 ~---------e~~~ecly~le~f~~LE~la~~L------pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s-~pk-----a 883 (1189)
T KOG2041|consen 825 T---------ENQIECLYRLELFGELEVLARTL------PEDSELLPVMADMFTSVGMCDQAVEAYLRRS-LPK-----A 883 (1189)
T ss_pred h---------HhHHHHHHHHHhhhhHHHHHHhc------CcccchHHHHHHHHHhhchHHHHHHHHHhcc-CcH-----H
Confidence 1 12455666666666555544433 3456667788899999999999999888775 332 3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCC-----------CchhHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 377 LLSFSAIHGKADMASKMGKRLIDINPY-----------DDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 377 ll~~~~~~g~~~~a~~~~~~~~~~~p~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
.+..|...+++.+|.++.++..-.... ...-..--|..+.++|+.-+|.+++.+|.++
T Consensus 884 Av~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~ 952 (1189)
T KOG2041|consen 884 AVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAER 952 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHH
Confidence 445667777777777766543210000 0001123567888999999999998888654
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0048 Score=44.73 Aligned_cols=64 Identities=17% Similarity=0.149 Sum_probs=48.8
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCC
Q 008183 339 LEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHG-KADMASKMGKRLIDINP 402 (575)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p 402 (575)
...|..+...+...|++++|+..|++. .+.| +...|..+..++...| ++++|.+.+++.++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 456677777778888888888887776 4455 3777888888888888 68888888888888776
|
... |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0026 Score=45.96 Aligned_cols=53 Identities=19% Similarity=0.268 Sum_probs=23.0
Q ss_pred cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 008183 352 AGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYD 404 (575)
Q Consensus 352 ~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 404 (575)
.|++++|.++|+++ ...| +...+..+..+|...|++++|..+++++....|++
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 34444444444443 1222 34444444444444444444444444444444443
|
... |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.56 Score=46.10 Aligned_cols=96 Identities=13% Similarity=0.176 Sum_probs=59.9
Q ss_pred HHHHHHHHccCCHHHHHHHHhhhCCCC-Ch--h-h---HHHHHHHHHH---cCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 008183 240 TGLIDGYGKAGIVSDARRVFDENLSVL-NS--I-A---WNAMMAGYAQ---QGDQSTVLELFHLLEMRGFAPDEYSFLAV 309 (575)
Q Consensus 240 ~~li~~~~~~g~~~~A~~~~~~~~~~~-~~--~-~---~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 309 (575)
-.++-.|....+++...++++. ++.. +. . + --...-++.+ .|+.++|++++..+......++..||..+
T Consensus 145 ~~lllSyRdiqdydamI~Lve~-l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVET-LEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHH-hhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 3455568888899999999988 6532 11 1 1 1122334556 78999999999886666667777788777
Q ss_pred HHHHHh---------cCCHHHHHHHHHHHHHhcCCCCCh
Q 008183 310 LTALCN---------AGLAGESEKWIERMKVRYKLEPGL 339 (575)
Q Consensus 310 l~a~~~---------~g~~~~a~~~~~~m~~~~~~~p~~ 339 (575)
...|-. ...+++|...|. +.+.+.|+.
T Consensus 224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~---kgFe~~~~~ 259 (374)
T PF13281_consen 224 GRIYKDLFLESNFTDRESLDKAIEWYR---KGFEIEPDY 259 (374)
T ss_pred HHHHHHHHHHcCccchHHHHHHHHHHH---HHHcCCccc
Confidence 666532 123455555555 334455553
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.056 Score=47.31 Aligned_cols=64 Identities=6% Similarity=-0.026 Sum_probs=34.5
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcC--HHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q 008183 167 VCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGST--MYCVSGALRAAAELAAMEQCRVIHGHAVVS 230 (575)
Q Consensus 167 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 230 (575)
..|..+...+...|++++|+..|++.......|. ..++..+...+...|+.++|...+....+.
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3455555556666666666666666654322221 134555555555556666666665555543
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.44 Score=41.15 Aligned_cols=132 Identities=17% Similarity=0.094 Sum_probs=91.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCC-CCC---CHHHH
Q 008183 299 FAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMP-FEP---DAAVW 374 (575)
Q Consensus 299 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p---~~~~~ 374 (575)
..|+...-..|..+....|+..+|...|++. ..--+.-|....-.+..+....+++.+|...+++.. ..| ++.+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qa-lsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQA-LSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHH-hccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 4566666677788888888888888888876 332233456666777777778888888888887762 112 23334
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHh
Q 008183 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432 (575)
Q Consensus 375 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 432 (575)
-.+...+...|+...|+..|+.++..-|. +..-.....++.++|+.+++..-+..+.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 45667788889999999999998887763 3444455677888888877765544443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0076 Score=51.45 Aligned_cols=69 Identities=20% Similarity=0.332 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHh-----hCCCccCC
Q 008183 372 AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK-----DRRVRKEG 440 (575)
Q Consensus 372 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~~~~~~~ 440 (575)
.+...++..+...|++++|..++++++..+|.+...|..++.+|...|+..+|.++++.+. +-|+.|.+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 4556677788889999999999999999999999999999999999999999999998875 35776544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.12 Score=41.97 Aligned_cols=91 Identities=14% Similarity=0.164 Sum_probs=63.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHh
Q 008183 274 MMAGYAQQGDQSTVLELFHLLEMRGFAPD--EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEP-GLEHYTCLISAMG 350 (575)
Q Consensus 274 li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~ 350 (575)
+..++-..|+.++|+.+|++....|.... ...+..+.+++...|++++|..++++...++.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44567788999999999999988887655 34566777888889999999999988855431111 1222223344677
Q ss_pred ccCChHHHHHHHHh
Q 008183 351 RAGRLEDAERIAMA 364 (575)
Q Consensus 351 ~~g~~~~A~~~~~~ 364 (575)
..|+.++|.+.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 78888888877644
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.45 E-value=1.3 Score=46.65 Aligned_cols=88 Identities=10% Similarity=0.052 Sum_probs=51.8
Q ss_pred HHHHHHHhHcCCChHHHHHHHccCCCCC---hhhHHHHHHHHhcCch--HHHHHHHHhhCCCCCcCCChhhHHHHHHHHh
Q 008183 36 YNNLITNYSKSNLLSYSLRLFNHIPSPN---IVSWTALISAHSNSPL--SLNIFLSMLRHPTLSFLPNQRTLASLFKTCA 110 (575)
Q Consensus 36 ~~~li~~~~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~--a~~~~~~m~~~~~~~~~p~~~t~~~ll~~~~ 110 (575)
-..+|+-+...+.+..|.++-..+..|. ...|.....-+.+..+ -.++++.+.+.-+. ..-...+|..+.+...
T Consensus 440 ~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~-~~~~~iSy~~iA~~Ay 518 (829)
T KOG2280|consen 440 EEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA-KLTPGISYAAIARRAY 518 (829)
T ss_pred hhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcc-cCCCceeHHHHHHHHH
Confidence 3456777777888888888888877665 3334444444444433 33333333332110 1134467777777777
Q ss_pred hchhhHHHHHHHHHH
Q 008183 111 SLSHAFLFGLSLHSL 125 (575)
Q Consensus 111 ~~~~~~~~a~~~~~~ 125 (575)
..| .++.+..+.+.
T Consensus 519 ~~G-R~~LA~kLle~ 532 (829)
T KOG2280|consen 519 QEG-RFELARKLLEL 532 (829)
T ss_pred hcC-cHHHHHHHHhc
Confidence 777 77777777654
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.13 Score=41.68 Aligned_cols=59 Identities=5% Similarity=0.081 Sum_probs=34.4
Q ss_pred HHHHHHhCCCchHHHHHHHHhHHCCCCcCH--HHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q 008183 172 MIVGFAQNSRLVDSLSVFADMRSSDVGSTM--YCVSGALRAAAELAAMEQCRVIHGHAVVS 230 (575)
Q Consensus 172 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 230 (575)
+..++-..|+.++|+.+|++....|+.... ..+..+.+++...|++++|..+++.....
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE 67 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344555667777777777777666655432 23444555555666666666666655543
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.013 Score=47.98 Aligned_cols=52 Identities=13% Similarity=0.175 Sum_probs=42.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 008183 298 GFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAM 349 (575)
Q Consensus 298 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 349 (575)
...|+..+..+++.+++..+++..|.++.+.....++++.+..+|..|+.-.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4678888888888888888888888888888888888877788888877643
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=96.34 E-value=1.2 Score=49.36 Aligned_cols=158 Identities=16% Similarity=0.141 Sum_probs=92.1
Q ss_pred CChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 008183 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAV 228 (575)
Q Consensus 149 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 228 (575)
+++++|+.-+.++. ...|.-.+.---++|.+.+|+.++ +|+...+..+..+|+.. +.
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~h------------L~ 950 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADH------------LR 950 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHH------------HH
Confidence 34455555444443 223333344334455555555543 46666665555554331 11
Q ss_pred HhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH--H
Q 008183 229 VSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYS--F 306 (575)
Q Consensus 229 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~ 306 (575)
+. ..|+-..-+|.++|+.++|.+.+.. .|+|++|+.+-.+|... -|... -
T Consensus 951 ~~------~~~~~Aal~Ye~~GklekAl~a~~~-------------------~~dWr~~l~~a~ql~~~---~de~~~~a 1002 (1265)
T KOG1920|consen 951 EE------LMSDEAALMYERCGKLEKALKAYKE-------------------CGDWREALSLAAQLSEG---KDELVILA 1002 (1265)
T ss_pred Hh------ccccHHHHHHHHhccHHHHHHHHHH-------------------hccHHHHHHHHHhhcCC---HHHHHHHH
Confidence 11 1223344567788888888777766 78888888887776532 12222 2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCC
Q 008183 307 LAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMP 366 (575)
Q Consensus 307 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (575)
..|.+-+...+++-+|-++..+... .| .-.+..|+++..+++|.++....+
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~s----d~-----~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLS----DP-----EEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhc----CH-----HHHHHHHhhHhHHHHHHHHHHhcc
Confidence 4566777788888888887776632 22 344567788888888888776653
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.0031 Score=38.20 Aligned_cols=32 Identities=31% Similarity=0.523 Sum_probs=29.8
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHhCCCchHHH
Q 008183 394 GKRLIDINPYDDSAYVIVANVLSGVGRWDEVA 425 (575)
Q Consensus 394 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 425 (575)
++++++++|.++.+|..|...|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67889999999999999999999999999986
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.034 Score=52.28 Aligned_cols=92 Identities=18% Similarity=0.137 Sum_probs=49.9
Q ss_pred HHHHHHHHhccCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCc---hhHHHHHH
Q 008183 342 YTCLISAMGRAGRLEDAERIAMAM-PFEPD----AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDD---SAYVIVAN 413 (575)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~ 413 (575)
|..-+..+.+.|++++|...|+.. ...|+ ...+--+..+|...|++++|...|+.+++..|.++ .++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 444444444455666666555554 11222 23444455666666666666666666666555433 23444455
Q ss_pred HHHhCCCchHHHHHHHHHhh
Q 008183 414 VLSGVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 414 ~~~~~g~~~~a~~~~~~m~~ 433 (575)
.|...|++++|.++++.+.+
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 56666666666666666554
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.65 Score=40.17 Aligned_cols=100 Identities=13% Similarity=0.038 Sum_probs=53.1
Q ss_pred CcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCC----CChhhHHH
Q 008183 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSV----LNSIAWNA 273 (575)
Q Consensus 198 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~ 273 (575)
.|+...-..+..+....|+..+|...|.+....-+.-|..+.-.+.++....+++..|...++..++. .+..+-..
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 34444444555555666666666666666555445555555555566666666666666666553331 11222333
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Q 008183 274 MMAGYAQQGDQSTVLELFHLLEMR 297 (575)
Q Consensus 274 li~~~~~~g~~~~A~~l~~~m~~~ 297 (575)
+...|...|.+.+|..-|+.....
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh
Confidence 444455555555555555555543
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.24 Score=45.11 Aligned_cols=167 Identities=11% Similarity=0.008 Sum_probs=113.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHhcCCC----------CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHH
Q 008183 138 GSALVHFYSRFRSPDNAKKVFDEIRER----------DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGA 207 (575)
Q Consensus 138 ~~~li~~~~~~g~~~~A~~~f~~m~~~----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 207 (575)
++.|+..|.-..-+++-...|+.-..| -...-+.++..+.-.|.+.-.+.++++..+...+-++.....+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 566776666555555555555543321 2234466777777788888889999998887666677778888
Q ss_pred HHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHH-----HHHHHccCCHHHHHHHHhhhCC---CCChhhHHHHHHHHH
Q 008183 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGL-----IDGYGKAGIVSDARRVFDENLS---VLNSIAWNAMMAGYA 279 (575)
Q Consensus 208 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-----i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~li~~~~ 279 (575)
.+..-+.|+.+.|...++...+..-..|....+.+ ...|.-.+++..|...|++ +. +.|.+.-|.=.-+..
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~-i~~~D~~~~~a~NnKALcll 297 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTE-ILRMDPRNAVANNNKALCLL 297 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhh-ccccCCCchhhhchHHHHHH
Confidence 88888899999999888877664334444434333 3456667788888888877 44 445566665555566
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 008183 280 QQGDQSTVLELFHLLEMRGFAPDEYSFL 307 (575)
Q Consensus 280 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 307 (575)
-.|+..+|++..+.|... .|...+-+
T Consensus 298 Ylg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 298 YLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred HHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 678888899888888875 44444433
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.0094 Score=38.66 Aligned_cols=42 Identities=29% Similarity=0.449 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHH
Q 008183 372 AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVAN 413 (575)
Q Consensus 372 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 413 (575)
.+|..+..+|...|++++|+++++++++..|+|+.++..|..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467788899999999999999999999999999888776653
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.4 Score=43.75 Aligned_cols=166 Identities=10% Similarity=-0.041 Sum_probs=106.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHhhhCC-CCCh--------hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 008183 239 GTGLIDGYGKAGIVSDARRVFDENLS-VLNS--------IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAV 309 (575)
Q Consensus 239 ~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~--------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 309 (575)
+++|+..|.-..-+++-...|+.-.. +..+ ..-+.++..+.-.|.+.-...++++..+...+-+......|
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 44555555444444444444443111 2222 23456667777788888888999999887766777888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHH-----HHHHHHhccCChHHHHHHHHhCCCC--CCHHHHHHHHHHHH
Q 008183 310 LTALCNAGLAGESEKWIERMKVRYKLEPGLEHYT-----CLISAMGRAGRLEDAERIAMAMPFE--PDAAVWRALLSFSA 382 (575)
Q Consensus 310 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~--p~~~~~~~ll~~~~ 382 (575)
.+.-.+.|+.+.|..+|+...+..+ ..+....+ .....|.-++++.+|...|.+.+.. .|+...|.=.-...
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcll 297 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLL 297 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHh-hhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHH
Confidence 8888899999999999997743322 23333333 3334456677888888888877422 23444444333344
Q ss_pred HcCChHHHHHHHHHHHhcCCCCc
Q 008183 383 IHGKADMASKMGKRLIDINPYDD 405 (575)
Q Consensus 383 ~~g~~~~a~~~~~~~~~~~p~~~ 405 (575)
-.|+...|.+..+.+.+..|...
T Consensus 298 Ylg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 298 YLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred HHHHHHHHHHHHHHHhccCCccc
Confidence 46788888888888888887543
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.031 Score=55.48 Aligned_cols=95 Identities=15% Similarity=0.106 Sum_probs=55.7
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHH
Q 008183 339 LEHYTCLISAMGRAGRLEDAERIAMAM-PFEPDA----AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVAN 413 (575)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 413 (575)
...++.+..+|.+.|++++|...|++. .+.|+. .+|..+..+|...|+.++|...++++++..+. .|..+..
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i~~ 151 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTILN 151 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHHHh
Confidence 566667777777777777777777664 556652 34777777777777777777777777775321 1211111
Q ss_pred --HHHhCCCchHHHHHHHHHhhCCC
Q 008183 414 --VLSGVGRWDEVAEVRKVMKDRRV 436 (575)
Q Consensus 414 --~~~~~g~~~~a~~~~~~m~~~~~ 436 (575)
.+....+.++..++++.....|.
T Consensus 152 DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 152 DPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred CcchhhhcccHHHHHHHHHHHHhCC
Confidence 11122233455666666666554
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.026 Score=41.28 Aligned_cols=61 Identities=18% Similarity=0.249 Sum_probs=49.4
Q ss_pred HHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchh
Q 008183 347 SAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSA 407 (575)
Q Consensus 347 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 407 (575)
..|.+.+++++|.++++.+ .+.| ++..|......+...|++++|.+.+++.++..|.++..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 4677888899998888887 4455 47777778888889999999999999999998877654
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.17 Score=47.60 Aligned_cols=99 Identities=15% Similarity=0.151 Sum_probs=63.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCh----hHHHHHHHHHhccCChHHHHHHHHhC----CCCC-CHHHHH
Q 008183 305 SFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGL----EHYTCLISAMGRAGRLEDAERIAMAM----PFEP-DAAVWR 375 (575)
Q Consensus 305 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~ 375 (575)
.|...+....+.|++++|...|+.+...+ |+. ..+--+...|...|++++|...|+.+ |..| ....+-
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y---P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY---PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC---cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34444444445577777777777765443 332 35556666777777777777777766 2222 244455
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCch
Q 008183 376 ALLSFSAIHGKADMASKMGKRLIDINPYDDS 406 (575)
Q Consensus 376 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 406 (575)
.+...+...|+.+.|..+++++++..|.+..
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 5566677788888888888888888886643
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=95.97 E-value=1.4 Score=41.11 Aligned_cols=66 Identities=6% Similarity=-0.118 Sum_probs=42.8
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHH--HHHHHHHHHHhcccHHHHHHHHHHHHHh
Q 008183 165 DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMY--CVSGALRAAAELAAMEQCRVIHGHAVVS 230 (575)
Q Consensus 165 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 230 (575)
+...+-.....+.+.|++++|++.|+++...-..+... ..-.+..++.+.++++.|...++..++.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 33334345555677899999999999987743222111 1134456667788888888888887765
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.73 Score=37.41 Aligned_cols=141 Identities=14% Similarity=0.130 Sum_probs=86.7
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHH
Q 008183 278 YAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLED 357 (575)
Q Consensus 278 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 357 (575)
+.-.|..++..++..+..... +..-++.+|--....-+-+-..+.++.+-.-+ |. ..+|++..
T Consensus 12 ~ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiF----Di----------s~C~NlKr 74 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIF----DI----------SKCGNLKR 74 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-----G----------GG-S-THH
T ss_pred HHHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhc----Cc----------hhhcchHH
Confidence 345677777788877776542 44455555544444445555556665552222 21 34556666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCCCc
Q 008183 358 AERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVR 437 (575)
Q Consensus 358 A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 437 (575)
....+-.++ .+.......+......|+-+.-.+++..+.+.+..+|....-+..+|.+.|+..++.+++++..++|++
T Consensus 75 Vi~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 75 VIECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 655555553 334555667788889999999999999988766668888999999999999999999999999999985
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.76 E-value=1.5 Score=39.82 Aligned_cols=85 Identities=12% Similarity=0.027 Sum_probs=50.7
Q ss_pred HHHHHHHhccCChHHHHHHHHhCC-------CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC----CCCchhHHH
Q 008183 343 TCLISAMGRAGRLEDAERIAMAMP-------FEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDIN----PYDDSAYVI 410 (575)
Q Consensus 343 ~~li~~~~~~g~~~~A~~~~~~m~-------~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----p~~~~~~~~ 410 (575)
......|.+..++++|-..|.+-+ --|+ -..|.+.|-.+.-..|+..|++.++.-.+.. |.+..+...
T Consensus 154 gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~len 233 (308)
T KOG1585|consen 154 GKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLEN 233 (308)
T ss_pred HHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHH
Confidence 334445666677777666555442 1222 2334555556666678888888888765533 556667777
Q ss_pred HHHHHHhCCCchHHHHHH
Q 008183 411 VANVLSGVGRWDEVAEVR 428 (575)
Q Consensus 411 l~~~~~~~g~~~~a~~~~ 428 (575)
|+.+|- .|+.+++.+++
T Consensus 234 LL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 234 LLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHHhc-cCCHHHHHHHH
Confidence 777774 56667666554
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.14 Score=42.12 Aligned_cols=96 Identities=15% Similarity=0.155 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008183 302 DEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFS 381 (575)
Q Consensus 302 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~ 381 (575)
|..++..++-++++.|+++....+.+ .-+|+.++...- .+. +-..-++.|+..+..+++.+|
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~---~~WgI~~~~~~~---------~~~------~~~~spl~Pt~~lL~AIv~sf 62 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIK---SVWGIDVNGKKK---------EGD------YPPSSPLYPTSRLLIAIVHSF 62 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHH---HhcCCCCCCccc---------cCc------cCCCCCCCCCHHHHHHHHHHH
Confidence 45667777777777777777777765 335555442110 000 111114556666666666666
Q ss_pred HHcCChHHHHHHHHHHHhcC--CCCchhHHHHHHHH
Q 008183 382 AIHGKADMASKMGKRLIDIN--PYDDSAYVIVANVL 415 (575)
Q Consensus 382 ~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~ 415 (575)
...+++..|.++.+...+.- |-+..+|..|++-.
T Consensus 63 ~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 63 GYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 66666666666666655533 22334555555443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.065 Score=45.64 Aligned_cols=67 Identities=21% Similarity=0.317 Sum_probs=34.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH-----HcCCCCCHHH
Q 008183 239 GTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLE-----MRGFAPDEYS 305 (575)
Q Consensus 239 ~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~-----~~g~~p~~~t 305 (575)
...++..+...|++++|.++.+..+. +-|...|..+|.+|...|+..+|.+.|+.+. +.|+.|+..|
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 33455555566666666666665332 4455566666666666666666666665553 2356665544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.14 Score=47.12 Aligned_cols=109 Identities=16% Similarity=0.184 Sum_probs=84.3
Q ss_pred HHHHHhhhCC--CCChhhHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----------
Q 008183 255 ARRVFDENLS--VLNSIAWNAMMAGYAQQ-----GDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG---------- 317 (575)
Q Consensus 255 A~~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g---------- 317 (575)
.++.|.. .+ ++|-.+|.+++..+... +..+=....++.|.+-|+.-|..+|..||+.+-+..
T Consensus 53 ~e~~F~a-a~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 53 VEKQFEA-AEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred hhhhhhc-cCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3555665 44 67888888888887654 566767777889999999999999999999875542
Q ss_pred ------CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCh-HHHHHHHHhC
Q 008183 318 ------LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRL-EDAERIAMAM 365 (575)
Q Consensus 318 ------~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m 365 (575)
.-+-+..++++| +.+|+-||.++-..|+.++++.+.. .+..++.--|
T Consensus 132 F~HYP~QQ~C~I~vLeqM-E~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQM-EWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HhhCchhhhHHHHHHHHH-HHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 335688999999 8999999999999999999998864 3444444444
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.73 Score=41.70 Aligned_cols=49 Identities=6% Similarity=0.168 Sum_probs=25.7
Q ss_pred HhCCChHHHHHHHHhcCC--CC----cchHHHHHHHHHhCCCchHHHHHHHHhHH
Q 008183 146 SRFRSPDNAKKVFDEIRE--RD----VVCYGAMIVGFAQNSRLVDSLSVFADMRS 194 (575)
Q Consensus 146 ~~~g~~~~A~~~f~~m~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 194 (575)
...|++++|.+.|+.+.. |+ ..+.-.++.++.+.|++++|...|++..+
T Consensus 16 ~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 16 LQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 355666666666665543 21 12333455566666666666666666554
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.025 Score=42.05 Aligned_cols=58 Identities=16% Similarity=0.186 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhc----CCCC---chhHHHHHHHHHhCCCchHHHHHHHH
Q 008183 373 VWRALLSFSAIHGKADMASKMGKRLIDI----NPYD---DSAYVIVANVLSGVGRWDEVAEVRKV 430 (575)
Q Consensus 373 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~ 430 (575)
+++.+...|...|++++|+..+++.+++ ++.+ ..++..+..+|...|++++|.+.+++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444444444444444444444421 1111 22444555555555555555555544
|
... |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.032 Score=41.47 Aligned_cols=60 Identities=18% Similarity=0.134 Sum_probs=49.6
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008183 339 LEHYTCLISAMGRAGRLEDAERIAMAM-------P-FEPD-AAVWRALLSFSAIHGKADMASKMGKRLI 398 (575)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m-------~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 398 (575)
..+|+.+...|...|++++|+..|++. + ..|+ ..++..+...+...|++++|++.+++..
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 467889999999999999999988776 2 1233 6778999999999999999999998865
|
... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.39 Score=45.03 Aligned_cols=95 Identities=14% Similarity=0.076 Sum_probs=44.4
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHh---cccHHHHHHHHHHHHHhCCCCchhHHHH
Q 008183 165 DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAE---LAAMEQCRVIHGHAVVSGLDRNVIVGTG 241 (575)
Q Consensus 165 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~---~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 241 (575)
|...|-.|-..|.+.|+...|..-|....+.. .+|...+..+..++.. ...-.++..+++++++.. +.|+....-
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence 55566666666666666666666666654421 1222333333333222 223344455555555432 333333344
Q ss_pred HHHHHHccCCHHHHHHHHhh
Q 008183 242 LIDGYGKAGIVSDARRVFDE 261 (575)
Q Consensus 242 li~~~~~~g~~~~A~~~~~~ 261 (575)
|...+...|++.+|...++.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~ 252 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQM 252 (287)
T ss_pred HHHHHHHcccHHHHHHHHHH
Confidence 44444444444444444444
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.96 E-value=1.1 Score=46.29 Aligned_cols=82 Identities=13% Similarity=0.109 Sum_probs=43.9
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCC
Q 008183 341 HYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGR 420 (575)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 420 (575)
+...+..-+-+...+.-|.++|.+|+-. .+++......+++++|..+.++.-+..| ..|.....-++...+
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~------ksiVqlHve~~~W~eAFalAe~hPe~~~---dVy~pyaqwLAE~Dr 819 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL------KSLVQLHVETQRWDEAFALAEKHPEFKD---DVYMPYAQWLAENDR 819 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH------HHHhhheeecccchHhHhhhhhCccccc---cccchHHHHhhhhhh
Confidence 3333333344445555566666666421 2344445556666666666655544443 244555566666667
Q ss_pred chHHHHHHHHH
Q 008183 421 WDEVAEVRKVM 431 (575)
Q Consensus 421 ~~~a~~~~~~m 431 (575)
+++|.+.|-+.
T Consensus 820 FeEAqkAfhkA 830 (1081)
T KOG1538|consen 820 FEEAQKAFHKA 830 (1081)
T ss_pred HHHHHHHHHHh
Confidence 77776666543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.96 E-value=5.7 Score=41.68 Aligned_cols=18 Identities=11% Similarity=0.180 Sum_probs=10.1
Q ss_pred HHHcCChHHHHHHHHHHH
Q 008183 278 YAQQGDQSTVLELFHLLE 295 (575)
Q Consensus 278 ~~~~g~~~~A~~l~~~m~ 295 (575)
+-+.|+.-.|-+++.+|.
T Consensus 933 ~Rka~~~~daarll~qma 950 (1189)
T KOG2041|consen 933 DRKAGRHLDAARLLSQMA 950 (1189)
T ss_pred hhhcccchhHHHHHHHHh
Confidence 444555555666665553
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.91 E-value=4.1 Score=39.74 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHH
Q 008183 270 AWNAMMAGYAQQGDQSTVLELFHLLE 295 (575)
Q Consensus 270 ~~~~li~~~~~~g~~~~A~~l~~~m~ 295 (575)
.|.+.+...+..|+++.|+++.+.-.
T Consensus 190 A~~AtLe~r~~~gdWd~AlkLvd~~~ 215 (531)
T COG3898 190 AARATLEARCAAGDWDGALKLVDAQR 215 (531)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 34445555555555555555554443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=94.73 E-value=4.2 Score=40.11 Aligned_cols=73 Identities=14% Similarity=0.074 Sum_probs=47.9
Q ss_pred HHHHHHHhCCChHHHHHHHHhcCCC---Cc----chHHHHHHHHHh---CCCchHHHHHHHHhHHCCCCcCHHHHHHHHH
Q 008183 140 ALVHFYSRFRSPDNAKKVFDEIRER---DV----VCYGAMIVGFAQ---NSRLVDSLSVFADMRSSDVGSTMYCVSGALR 209 (575)
Q Consensus 140 ~li~~~~~~g~~~~A~~~f~~m~~~---~~----~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 209 (575)
.|+-.|-...+++...++.+.+... +. ..--...-++-+ .|+.++|++++..+......++..||..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3334577778888888888888763 11 111123334455 7888888888888666666777778777766
Q ss_pred HHH
Q 008183 210 AAA 212 (575)
Q Consensus 210 ~~~ 212 (575)
.|-
T Consensus 226 IyK 228 (374)
T PF13281_consen 226 IYK 228 (374)
T ss_pred HHH
Confidence 553
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.23 Score=45.78 Aligned_cols=101 Identities=13% Similarity=0.160 Sum_probs=79.7
Q ss_pred HHHHHHHHhcC--CCCcchHHHHHHHHHhC-----CCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhc----------
Q 008183 152 DNAKKVFDEIR--ERDVVCYGAMIVGFAQN-----SRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAEL---------- 214 (575)
Q Consensus 152 ~~A~~~f~~m~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~---------- 214 (575)
--.++.|.... ++|..+|-+++..|... +..+=....++.|.+-|+.-|..+|..+|+.+-+-
T Consensus 51 v~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~ 130 (406)
T KOG3941|consen 51 VHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQK 130 (406)
T ss_pred cchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence 34566777776 57888998888887654 45666667788899999999999999999876542
Q ss_pred ------ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCH
Q 008183 215 ------AAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252 (575)
Q Consensus 215 ------~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 252 (575)
.+-+-+..++++|...|+-||-.+-..|++++++.+-.
T Consensus 131 ~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 131 VFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 23455788999999999999999999999999887753
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=94.42 E-value=9 Score=41.55 Aligned_cols=173 Identities=8% Similarity=-0.001 Sum_probs=111.3
Q ss_pred ccHHHHHHHHHhhCCCcccHHHHHHHHhHcCCChHHHHHHHccCCC--CChhhHHHHHHHHhcCch-------HHHHHHH
Q 008183 16 TDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPS--PNIVSWTALISAHSNSPL-------SLNIFLS 86 (575)
Q Consensus 16 ~~~~~~~~~~~~~g~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~-------a~~~~~~ 86 (575)
.+|..+.+-....+..|..+...+-..|-..+..++|..++++... |+...-..+.-+|+|.+. |+++++.
T Consensus 60 ~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~ 139 (932)
T KOG2053|consen 60 DEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN 139 (932)
T ss_pred hhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444433333336788899999999999999999999999864 554444555666666655 7887774
Q ss_pred HhhCCCCCcCCChhhHHHHHHHHhhchh---------hHHHHHHHHHHHHhhC-CCCchhHHHHHHHHHHhCCChHHHHH
Q 008183 87 MLRHPTLSFLPNQRTLASLFKTCASLSH---------AFLFGLSLHSLSLKLS-LHDKPFCGSALVHFYSRFRSPDNAKK 156 (575)
Q Consensus 87 m~~~~~~~~~p~~~t~~~ll~~~~~~~~---------~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~ 156 (575)
.+-+.+.|-++++....... -+..|....+.+++.+ ...+..-.-.-.......|.+++|+.
T Consensus 140 --------~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~ 211 (932)
T KOG2053|consen 140 --------FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALE 211 (932)
T ss_pred --------CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHH
Confidence 44566778787777665431 2344556666666554 21122112222344557788999999
Q ss_pred HHHh-c----CCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCC
Q 008183 157 VFDE-I----RERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196 (575)
Q Consensus 157 ~f~~-m----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 196 (575)
++.. . ..-+...-|--+..+...+++.+..++-.++...|
T Consensus 212 ~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 212 FLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 9832 2 22344444556777788888888888888887765
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.22 E-value=2.8 Score=41.16 Aligned_cols=155 Identities=12% Similarity=0.048 Sum_probs=99.6
Q ss_pred HHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHH--HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH---HHH-----
Q 008183 243 IDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAG--YAQQGDQSTVLELFHLLEMRGFAPDEYSFLAV---LTA----- 312 (575)
Q Consensus 243 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l---l~a----- 312 (575)
..++.-.|+.++|.+.--..+....+..+...+.+ +--.++.+.|...|++-.+. .|+...-..+ ...
T Consensus 176 a~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k 253 (486)
T KOG0550|consen 176 AECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKK 253 (486)
T ss_pred hhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHH
Confidence 34566678888887776663332223333334443 44577888888888887764 4554433222 222
Q ss_pred -----HHhcCCHHHHHHHHHHHHHhcCCCCC-----hhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHHHHHHHH--H
Q 008183 313 -----LCNAGLAGESEKWIERMKVRYKLEPG-----LEHYTCLISAMGRAGRLEDAERIAMAM-PFEPDAAVWRALL--S 379 (575)
Q Consensus 313 -----~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll--~ 379 (575)
..+.|.+..|.+.+.+.+ ++.|+ ...|........+.|++++|..--+.. .+.| ...+..+. .
T Consensus 254 ~~gN~~fk~G~y~~A~E~Yteal---~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~-syikall~ra~ 329 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEAL---NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDS-SYIKALLRRAN 329 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHhh---cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH-HHHHHHHHHHH
Confidence 245689999999988663 55554 566777777788999999999877665 3333 23333333 3
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCC
Q 008183 380 FSAIHGKADMASKMGKRLIDINPY 403 (575)
Q Consensus 380 ~~~~~g~~~~a~~~~~~~~~~~p~ 403 (575)
++...+++++|.+-++...+...+
T Consensus 330 c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 330 CHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccc
Confidence 455568899999999999887643
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.22 E-value=2 Score=42.48 Aligned_cols=143 Identities=20% Similarity=0.190 Sum_probs=82.6
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHhhhCC-----CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008183 236 VIVGTGLIDGYGKAGIVSDARRVFDENLS-----VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL 310 (575)
Q Consensus 236 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 310 (575)
..++..+++.-.+..-++.|..+|-+ .. .+++..++++|.-++ .|++.-|..+|+.=... ..-+..--.-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k-~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIK-LRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHH-HhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-CCCchHHHHHHH
Confidence 45556666666666666667777765 32 345666666666554 35566666666643332 222222233444
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHH
Q 008183 311 TALCNAGLAGESEKWIERMKVRYKLEPG--LEHYTCLISAMGRAGRLEDAERIAMAM-PFEPDAAVWRALLSFSAI 383 (575)
Q Consensus 311 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~ 383 (575)
.-+...++-+.|..+|+.-..+ +..+ ...|..+|+--..-|++..|..+=++| .+-|...+...+.+-|..
T Consensus 474 ~fLi~inde~naraLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~i 547 (660)
T COG5107 474 LFLIRINDEENARALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYAI 547 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHhh
Confidence 5556667777788887744332 2222 467778887777788887777666666 234444444445555543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.17 E-value=1.1 Score=45.63 Aligned_cols=152 Identities=14% Similarity=0.083 Sum_probs=85.8
Q ss_pred ccCCHHHHHHHHh--hhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008183 248 KAGIVSDARRVFD--ENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKW 325 (575)
Q Consensus 248 ~~g~~~~A~~~~~--~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 325 (575)
-.|+++++.+..+ +.++.-+..-.+.++.-+-+.|.++.|+++-.+ ..+ -.....+.|+++.|.++
T Consensus 273 ~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~~---rFeLAl~lg~L~~A~~~ 340 (443)
T PF04053_consen 273 LRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTD---------PDH---RFELALQLGNLDIALEI 340 (443)
T ss_dssp HTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS----------HHH---HHHHHHHCT-HHHHHHH
T ss_pred HcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCC---------hHH---HhHHHHhcCCHHHHHHH
Confidence 3456666544444 212222344466677777777888888776433 211 12333567888888876
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCc
Q 008183 326 IERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDD 405 (575)
Q Consensus 326 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 405 (575)
..+. ++...|..|.+...+.|+++-|++.|++.+ -|..|+-.|...|+.+.-.++.+.....+.
T Consensus 341 a~~~-------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~--- 404 (443)
T PF04053_consen 341 AKEL-------DDPEKWKQLGDEALRQGNIELAEECYQKAK------DFSGLLLLYSSTGDREKLSKLAKIAEERGD--- 404 (443)
T ss_dssp CCCC-------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-------HHHHHHHHHHCT-HHHHHHHHHHHHHTT----
T ss_pred HHhc-------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc------CccccHHHHHHhCCHHHHHHHHHHHHHccC---
Confidence 4422 466788888888888888888888888875 245566667777877776777666655443
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHH
Q 008183 406 SAYVIVANVLSGVGRWDEVAEVRK 429 (575)
Q Consensus 406 ~~~~~l~~~~~~~g~~~~a~~~~~ 429 (575)
++....++.-.|+.++..+++.
T Consensus 405 --~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 405 --INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp --HHHHHHHHHHHT-HHHHHHHHH
T ss_pred --HHHHHHHHHHcCCHHHHHHHHH
Confidence 2333344444566666555554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.38 Score=44.48 Aligned_cols=91 Identities=21% Similarity=0.309 Sum_probs=56.1
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---chhHHH
Q 008183 341 HYTCLISAMGRAGRLEDAERIAMAM-------PFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYD---DSAYVI 410 (575)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~ 410 (575)
.|+.-++.| +.|++.+|...|... ...||..-| |..++...|++++|..+|..+.+..|.+ +.++.-
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 355444433 345566666666554 134455555 6677777777777777777777655443 345666
Q ss_pred HHHHHHhCCCchHHHHHHHHHhhC
Q 008183 411 VANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 411 l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
|.....+.|+.++|..+|+++.++
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 666777777777777777777654
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.24 Score=48.06 Aligned_cols=127 Identities=9% Similarity=-0.058 Sum_probs=83.8
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHH----hCCC-CchhHHHHHHHHHHccCCHHHHHHHHhhhCC------CC--Chh
Q 008183 203 CVSGALRAAAELAAMEQCRVIHGHAVV----SGLD-RNVIVGTGLIDGYGKAGIVSDARRVFDENLS------VL--NSI 269 (575)
Q Consensus 203 t~~~ll~~~~~~~~~~~a~~~~~~~~~----~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~--~~~ 269 (575)
.|..+-+.|.-.|+++.|...|+.-+. .|-. .....+..|.+++.-.|+++.|.+.|+..+. .+ ...
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 344445555556788888877765432 2311 2245677788888888999998888875221 23 234
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008183 270 AWNAMMAGYAQQGDQSTVLELFHLLEMR----G-FAPDEYSFLAVLTALCNAGLAGESEKWIERM 329 (575)
Q Consensus 270 ~~~~li~~~~~~g~~~~A~~l~~~m~~~----g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 329 (575)
+..+|...|.-..++++|+..+.+-... + ..-....+-+|..++...|..++|..+.+.-
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 5667788888888888888887654321 1 2224467778888888888888888776644
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.43 Score=46.51 Aligned_cols=64 Identities=13% Similarity=0.090 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 371 AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 371 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
..++..|...+.+.+++..|++...+.++.+|+|..+...=..+|...|+++.|+..|+++.+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 4567778888889999999999999999999999999888999999999999999999998864
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.51 Score=38.18 Aligned_cols=89 Identities=15% Similarity=0.138 Sum_probs=68.2
Q ss_pred HHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCCc---hhHHHHHHHHHhCCCc
Q 008183 348 AMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDIN-PYDD---SAYVIVANVLSGVGRW 421 (575)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~~---~~~~~l~~~~~~~g~~ 421 (575)
++...|+++.|++.|.+. .+-| ....||.=..++.-.|+.++|+.-+++.+++. +... .+|..-...|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 567788888888888776 3444 57788888889998999999998888888865 3322 2466667788889999
Q ss_pred hHHHHHHHHHhhCCC
Q 008183 422 DEVAEVRKVMKDRRV 436 (575)
Q Consensus 422 ~~a~~~~~~m~~~~~ 436 (575)
+.|..-|+...+-|-
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 999988888776653
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.33 Score=48.46 Aligned_cols=63 Identities=11% Similarity=0.028 Sum_probs=51.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCh----hHHHHHHHHHhccCChHHHHHHHHhC
Q 008183 300 APDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGL----EHYTCLISAMGRAGRLEDAERIAMAM 365 (575)
Q Consensus 300 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m 365 (575)
+.+...++.+..+|...|++++|...|++.. .+.|+. ..|..+..+|...|++++|...+++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rAL---eL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETAL---ELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3456788888889999999999999998764 446773 35888888999999999999988876
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=93.96 E-value=4.6 Score=36.47 Aligned_cols=59 Identities=7% Similarity=-0.065 Sum_probs=35.4
Q ss_pred HHHHHHhCCCchHHHHHHHHhHHCCCC--cCHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q 008183 172 MIVGFAQNSRLVDSLSVFADMRSSDVG--STMYCVSGALRAAAELAAMEQCRVIHGHAVVS 230 (575)
Q Consensus 172 li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 230 (575)
....+.+.|++.+|.+.|+.+...-.. --....-.+..++.+.++++.|...++..++.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444566778888888888888664211 11233445566667777777777777776654
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.49 E-value=4 Score=34.21 Aligned_cols=87 Identities=9% Similarity=0.172 Sum_probs=52.0
Q ss_pred hHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCC
Q 008183 101 TLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNS 180 (575)
Q Consensus 101 t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g 180 (575)
....++..+...+ .......+++.+++.+ ..++...|.++..|++.+ ..+....+.. ..+......+++.|.+.+
T Consensus 9 ~~~~vv~~~~~~~-~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 9 DVSEVVELFEKRN-LLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred CHHHHHHHHHhCC-cHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcC
Confidence 3445666666666 6777777777777776 366677788888887663 3333444442 223333444555566666
Q ss_pred CchHHHHHHHHh
Q 008183 181 RLVDSLSVFADM 192 (575)
Q Consensus 181 ~~~~A~~~~~~m 192 (575)
.++++.-++.++
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 666666665554
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.48 E-value=5.6 Score=35.83 Aligned_cols=195 Identities=21% Similarity=0.151 Sum_probs=116.8
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHhhhC----CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008183 236 VIVGTGLIDGYGKAGIVSDARRVFDENL----SVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311 (575)
Q Consensus 236 ~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 311 (575)
..........+...+.+..+...+.... .......+......+...+...++.+.+.........+.. .......
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDL-AEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcch-HHHHHHH
Confidence 4555666666666677776666666532 1233344555555666666677777777766654333311 1111222
Q ss_pred -HHHhcCCHHHHHHHHHHHHHhcCCCC----ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC--HHHHHHHHHHHHH
Q 008183 312 -ALCNAGLAGESEKWIERMKVRYKLEP----GLEHYTCLISAMGRAGRLEDAERIAMAM-PFEPD--AAVWRALLSFSAI 383 (575)
Q Consensus 312 -a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~--~~~~~~ll~~~~~ 383 (575)
.+...|+++.+...+.... . ..| ....+......+...++.++|...+.+. ...++ ...+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKAL-E--LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHH-h--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 5667777777777777662 2 222 2333334444456677777777777666 22333 5667777777777
Q ss_pred cCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 384 HGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 384 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
.++.+.|...+.......|.....+..+...+...|.++++...+.+....
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777888888888888777764445555555555666677777777666543
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=93.43 E-value=2.3 Score=36.34 Aligned_cols=90 Identities=11% Similarity=-0.066 Sum_probs=57.1
Q ss_pred HHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCH
Q 008183 173 IVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252 (575)
Q Consensus 173 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 252 (575)
...+.+.|++++|..+|+-+...+. -|..-+..+..++-..+++++|...|......+ .-|+...-....+|...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCH
Confidence 3345567788888888777765321 122233444444555677788877777766554 34555555567778888888
Q ss_pred HHHHHHHhhhCC
Q 008183 253 SDARRVFDENLS 264 (575)
Q Consensus 253 ~~A~~~~~~~~~ 264 (575)
+.|...|...+.
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 888888877444
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.38 E-value=1.8 Score=36.01 Aligned_cols=65 Identities=20% Similarity=0.197 Sum_probs=38.5
Q ss_pred hccCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCch-hHHHHHHH
Q 008183 350 GRAGRLEDAERIAMAM----PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDS-AYVIVANV 414 (575)
Q Consensus 350 ~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~ 414 (575)
.+.|++++|.+.|+.+ |..| ....---|+.+|.+.+++++|...+++.+++.|.++. -|.....+
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~g 91 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRG 91 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence 4456666666666665 2222 2334445667777777777777777777777776654 24433333
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.22 E-value=16 Score=41.12 Aligned_cols=53 Identities=15% Similarity=0.094 Sum_probs=25.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHhccCChHHHHHHHHhC
Q 008183 309 VLTALCNAGLAGESEKWIERMKVRYKLEPG--LEHYTCLISAMGRAGRLEDAERIAMAM 365 (575)
Q Consensus 309 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (575)
.+.+|...|++.+|..+..++. ..-+ ..+-..|+.-+...+++-+|-++..+.
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~----~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLS----EGKDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhc----CCHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 3445555555555555555441 1111 112244555555556665555555554
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.20 E-value=4.5 Score=33.91 Aligned_cols=126 Identities=6% Similarity=-0.037 Sum_probs=63.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHh
Q 008183 271 WNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMG 350 (575)
Q Consensus 271 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 350 (575)
...++..+.+.+.+.....+++.+...+. .+....+.++..|++.. .+.....+.. .++.......+..+.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c~ 80 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHHH
Confidence 34455566666666666666666665542 45556666666666543 2233333321 122223334555666
Q ss_pred ccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 008183 351 RAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIH-GKADMASKMGKRLIDINPYDDSAYVIVANVLS 416 (575)
Q Consensus 351 ~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 416 (575)
+.+.++++.-++.+++... ..+..+... ++++.|.+++.+ +.++..|..++..+.
T Consensus 81 ~~~l~~~~~~l~~k~~~~~------~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 81 KAKLYEEAVELYKKDGNFK------DAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HcCcHHHHHHHHHhhcCHH------HHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 6666666666666665211 122222233 566666666554 223445555555444
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.17 E-value=5.4 Score=41.32 Aligned_cols=161 Identities=13% Similarity=0.048 Sum_probs=86.5
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhC-CCCc-----hhHHHHHHHHHHc----cCCHHHHHHHHhhhCC-CCChhhHHH
Q 008183 205 SGALRAAAELAAMEQCRVIHGHAVVSG-LDRN-----VIVGTGLIDGYGK----AGIVSDARRVFDENLS-VLNSIAWNA 273 (575)
Q Consensus 205 ~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~-----~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~~ 273 (575)
..+++...=.|+-+.+.+.+....+.+ +... .-.|+..+..++. ..+++.|.++++.+.. -|+...|.-
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~ 271 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLF 271 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 344444444566666666665554422 1111 1234444433332 3456777777777333 355555543
Q ss_pred HH-HHHHHcCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 008183 274 MM-AGYAQQGDQSTVLELFHLLEMRG---FAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAM 349 (575)
Q Consensus 274 li-~~~~~~g~~~~A~~l~~~m~~~g---~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 349 (575)
.- ..+...|++++|++.|++..... .+.....+--+.-.+.-..++++|...|..+.......+...+|.. .-.+
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~-a~c~ 350 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLA-AACL 350 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHH-HHHH
Confidence 32 23556777777777777654211 1223344555566667778888888888877554444333333322 1234
Q ss_pred hccCCh-------HHHHHHHHhCC
Q 008183 350 GRAGRL-------EDAERIAMAMP 366 (575)
Q Consensus 350 ~~~g~~-------~~A~~~~~~m~ 366 (575)
...|+. ++|.++|.+.+
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HhhccchhhhhhHHHHHHHHHHHH
Confidence 455666 77888887773
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.15 E-value=6.8 Score=37.70 Aligned_cols=144 Identities=10% Similarity=0.052 Sum_probs=89.1
Q ss_pred hhhHHHHHHHHhh-chhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHh--CC----ChHHHHHHHHhcCC-------C
Q 008183 99 QRTLASLFKTCAS-LSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSR--FR----SPDNAKKVFDEIRE-------R 164 (575)
Q Consensus 99 ~~t~~~ll~~~~~-~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~--~g----~~~~A~~~f~~m~~-------~ 164 (575)
..++..+|..-.. ....+.....+++.+.+.|+..+.++|-+-.-.... .. .+..|..+|+.|++ +
T Consensus 60 ~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~ 139 (297)
T PF13170_consen 60 RFILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSP 139 (297)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCc
Confidence 3444444444444 223577777888888888888877766553333322 22 34568888888876 3
Q ss_pred CcchHHHHHHHHHhCCCc----hHHHHHHHHhHHCCCCcCHH-HHHHHHHHHHh-ccc--HHHHHHHHHHHHHhCCCCch
Q 008183 165 DVVCYGAMIVGFAQNSRL----VDSLSVFADMRSSDVGSTMY-CVSGALRAAAE-LAA--MEQCRVIHGHAVVSGLDRNV 236 (575)
Q Consensus 165 ~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~-~~~--~~~a~~~~~~~~~~g~~~~~ 236 (575)
+-.++.+|+.. ..++. +.+...|+.+.+.|+..+.. -+.+-+-++.. ... ...+..+++.+.+.|+++..
T Consensus 140 ~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~ 217 (297)
T PF13170_consen 140 EDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKY 217 (297)
T ss_pred cchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcccc
Confidence 55667777655 33333 45677888888878776543 33333333332 222 45677888888899988887
Q ss_pred hHHHHHHH
Q 008183 237 IVGTGLID 244 (575)
Q Consensus 237 ~~~~~li~ 244 (575)
..|..+.-
T Consensus 218 ~~yp~lGl 225 (297)
T PF13170_consen 218 MHYPTLGL 225 (297)
T ss_pred ccccHHHH
Confidence 77765543
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.12 E-value=3.9 Score=42.33 Aligned_cols=117 Identities=14% Similarity=0.098 Sum_probs=68.5
Q ss_pred HHHHHHhcCch--HHHHHHHHhhCCCCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchh------HHHH
Q 008183 69 ALISAHSNSPL--SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF------CGSA 140 (575)
Q Consensus 69 ~li~~~~~~g~--a~~~~~~m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~------~~~~ 140 (575)
.-+......|- ...+|.-+... +||. +..++...+=.| |-+.|.+.+....+.+--..+. .|..
T Consensus 163 ~~~d~~~~sgv~~G~G~f~L~lSl----LPp~---~~kll~~vGF~g-dR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~ 234 (468)
T PF10300_consen 163 KPIDEFFESGVYFGFGLFNLVLSL----LPPK---VLKLLSFVGFSG-DRELGLRLLWEASKSENIRSPLAALVLLWYHL 234 (468)
T ss_pred chhHHHHHHhHHHHHHHHHHHHHh----CCHH---HHHHHhhcCcCC-cHHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 35666666666 77888888774 4443 455666667777 8888888888776643222222 2222
Q ss_pred HHHHHHh----CCChHHHHHHHHhcCC--CCcchHHHHH-HHHHhCCCchHHHHHHHHhH
Q 008183 141 LVHFYSR----FRSPDNAKKVFDEIRE--RDVVCYGAMI-VGFAQNSRLVDSLSVFADMR 193 (575)
Q Consensus 141 li~~~~~----~g~~~~A~~~f~~m~~--~~~~~~~~li-~~~~~~g~~~~A~~~~~~m~ 193 (575)
.+..+.. ..+.+.|.++++.+.+ |+...|...- +.+...|++++|++.|++..
T Consensus 235 ~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~ 294 (468)
T PF10300_consen 235 VVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAI 294 (468)
T ss_pred HHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhc
Confidence 2222222 3455667777776665 5655554332 33455677777777777653
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.10 E-value=14 Score=39.47 Aligned_cols=142 Identities=7% Similarity=0.074 Sum_probs=83.0
Q ss_pred ccHHHHHHHHhHcCCChHHHHHHHccCCCCChhhHHHHHHHHhcCchHHHHHHHHhhCCCCCcCCChhhHHHHHHHHhhc
Q 008183 33 RSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASL 112 (575)
Q Consensus 33 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~a~~~~~~m~~~~~~~~~p~~~t~~~ll~~~~~~ 112 (575)
..++...|..+.-.|++++|-.+.-.|-..+..-|.--+.-++..++-..++.-+.... ...+...|-.+|-.|..
T Consensus 392 ~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~lPt~~---~rL~p~vYemvLve~L~- 467 (846)
T KOG2066|consen 392 KKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPYLPTGP---PRLKPLVYEMVLVEFLA- 467 (846)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhccCCCCC---cccCchHHHHHHHHHHH-
Confidence 34677778888888888888888888888888888888887777777555555555543 34456667777777765
Q ss_pred hhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHh
Q 008183 113 SHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192 (575)
Q Consensus 113 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 192 (575)
. +.. .+++.+.+ .+++.+.....++. ...-|++-.+++ ..--.|+.-|...+++..|+.++-..
T Consensus 468 ~-~~~---~F~e~i~~--Wp~~Lys~l~iisa---------~~~q~~q~Se~~-~L~e~La~LYl~d~~Y~~Al~~ylkl 531 (846)
T KOG2066|consen 468 S-DVK---GFLELIKE--WPGHLYSVLTIISA---------TEPQIKQNSEST-ALLEVLAHLYLYDNKYEKALPIYLKL 531 (846)
T ss_pred H-HHH---HHHHHHHh--CChhhhhhhHHHhh---------cchHHHhhccch-hHHHHHHHHHHHccChHHHHHHHHhc
Confidence 2 222 22222221 12222222222211 111111111111 12223777888888888888887766
Q ss_pred HH
Q 008183 193 RS 194 (575)
Q Consensus 193 ~~ 194 (575)
+.
T Consensus 532 k~ 533 (846)
T KOG2066|consen 532 QD 533 (846)
T ss_pred cC
Confidence 43
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=92.95 E-value=8.8 Score=36.66 Aligned_cols=17 Identities=12% Similarity=-0.203 Sum_probs=10.1
Q ss_pred HHHcCChHHHHHHHHHH
Q 008183 381 SAIHGKADMASKMGKRL 397 (575)
Q Consensus 381 ~~~~g~~~~a~~~~~~~ 397 (575)
+.+.+++++|.+.++-.
T Consensus 256 ~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHhhcCHHHHHHHHHHH
Confidence 34556667776666543
|
It is also involved in sporulation []. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.91 E-value=0.53 Score=44.24 Aligned_cols=63 Identities=24% Similarity=0.353 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhh
Q 008183 371 AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 371 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 433 (575)
..++..++..+...|+.+.+...++++...+|.+...|..++.+|.+.|+...|...++.+.+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 445666778888889999999999999999999999999999999999999999999988865
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=92.91 E-value=11 Score=37.67 Aligned_cols=46 Identities=13% Similarity=0.001 Sum_probs=34.5
Q ss_pred CcccHHHHHHHHhHcCCChHHHHHHHccCC--------CCChhhHHHHHHHHhc
Q 008183 31 ADRSIYNNLITNYSKSNLLSYSLRLFNHIP--------SPNIVSWTALISAHSN 76 (575)
Q Consensus 31 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~--------~~~~~~~~~li~~~~~ 76 (575)
+|-+.-+..++.+.+.|++.+++.++++|. .-|+.+||.++-.+++
T Consensus 126 ~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsr 179 (549)
T PF07079_consen 126 SDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSR 179 (549)
T ss_pred hHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhH
Confidence 445566777888889999999999999885 2478888885554443
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.82 E-value=0.22 Score=29.79 Aligned_cols=32 Identities=16% Similarity=0.163 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 008183 372 AVWRALLSFSAIHGKADMASKMGKRLIDINPY 403 (575)
Q Consensus 372 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 403 (575)
.+|..+...+...|++++|+..++++++++|.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46777888888888888888888888888875
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.73 E-value=5.1 Score=40.95 Aligned_cols=56 Identities=16% Similarity=0.217 Sum_probs=26.1
Q ss_pred chhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008183 235 NVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEM 296 (575)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 296 (575)
+...|..|.+...+.|+++-|++.|.+ .. -|..|+-.|.-.|+.++-.++.+....
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k-~~-----d~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQK-AK-----DFSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHH-CT------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHh-hc-----CccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555555555555555555555555 21 244444444455554444444443333
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.69 E-value=8.2 Score=35.62 Aligned_cols=174 Identities=13% Similarity=0.075 Sum_probs=91.9
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHhcCCC------CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHH
Q 008183 136 FCGSALVHFYSRFRSPDNAKKVFDEIRER------DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALR 209 (575)
Q Consensus 136 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 209 (575)
..|+.-+.- .+.|++++|.+.|+.+..+ ..-+--.++-++-+.+++++|+..+++....-..-...-|..-|.
T Consensus 36 ~LY~~g~~~-L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylk 114 (254)
T COG4105 36 ELYNEGLTE-LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLK 114 (254)
T ss_pred HHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHH
Confidence 344443333 3678899999999888653 122344566778888999999988888876433222334444444
Q ss_pred HHHhc-------ccHHHHHHHHH---HHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhh-H-HHHHHH
Q 008183 210 AAAEL-------AAMEQCRVIHG---HAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIA-W-NAMMAG 277 (575)
Q Consensus 210 ~~~~~-------~~~~~a~~~~~---~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~-~~li~~ 277 (575)
+.+.. .+...+.+.+. .+++. +|-+..+ .+|..-... + .|... + -.+..-
T Consensus 115 gLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r-yPnS~Ya--------------~dA~~~i~~-~--~d~LA~~Em~Iary 176 (254)
T COG4105 115 GLSYFFQIDDVTRDQSAARAAFAAFKELVQR-YPNSRYA--------------PDAKARIVK-L--NDALAGHEMAIARY 176 (254)
T ss_pred HHHHhccCCccccCHHHHHHHHHHHHHHHHH-CCCCcch--------------hhHHHHHHH-H--HHHHHHHHHHHHHH
Confidence 44422 22222332222 22222 1111111 111111110 0 00011 1 123445
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008183 278 YAQQGDQSTVLELFHLLEMRGFAPD---EYSFLAVLTALCNAGLAGESEKWIERM 329 (575)
Q Consensus 278 ~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m 329 (575)
|.+.|.+..|..-+++|.+. .+-. ...+-.+..+|...|..++|...-.-+
T Consensus 177 Y~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 177 YLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 77888888888888888776 2211 234556667777777777777765544
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=92.60 E-value=3.1 Score=40.07 Aligned_cols=45 Identities=13% Similarity=0.197 Sum_probs=21.9
Q ss_pred HhCCCchHHHHHHHHhHHC--CCCcCHHHHHHHHHHHHhcccHHHHH
Q 008183 177 AQNSRLVDSLSVFADMRSS--DVGSTMYCVSGALRAAAELAAMEQCR 221 (575)
Q Consensus 177 ~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~ 221 (575)
.+..+.++|+..+.+-... ...---.++..+..+.+..|.++++.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL 63 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEML 63 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHH
Confidence 3455666666666555432 01111234555555555555555443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.56 E-value=1.9 Score=42.29 Aligned_cols=138 Identities=10% Similarity=0.020 Sum_probs=96.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCC
Q 008183 275 MAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGR 354 (575)
Q Consensus 275 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 354 (575)
.+.|.+.|++..|...|++.... |. +...-+.++...... .-..+++.|.-.|.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~~~---------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKAEA---------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHHHH---------HHHHHhhHHHHHHHhhhh
Confidence 45677788888888887776542 11 111111122222211 123456777888999999
Q ss_pred hHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHH-HHHHHHH
Q 008183 355 LEDAERIAMAM-PFE-PDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEV-AEVRKVM 431 (575)
Q Consensus 355 ~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m 431 (575)
+.+|.+.-++. ... +|+-..--=..++...|+++.|...|++++++.|.|-.+-..|+.+-.+..+..+. .++|..|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998877665 333 45666666678889999999999999999999999988888888888777776654 7788888
Q ss_pred hhC
Q 008183 432 KDR 434 (575)
Q Consensus 432 ~~~ 434 (575)
-.+
T Consensus 353 F~k 355 (397)
T KOG0543|consen 353 FAK 355 (397)
T ss_pred hhc
Confidence 643
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=92.53 E-value=2.1 Score=43.01 Aligned_cols=62 Identities=13% Similarity=0.013 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHH
Q 008183 370 DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVM 431 (575)
Q Consensus 370 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 431 (575)
|+.....+..+....++.+.|...|+++..++|+.+.+|........-+|+.++|.+.+++-
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45555555555555566667777777777777766666666666666667777766666653
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=92.34 E-value=14 Score=37.53 Aligned_cols=56 Identities=9% Similarity=0.028 Sum_probs=33.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008183 274 MMAGYAQQGDQSTVLELFHLLEMRGFA-PDEYSFLAVLTALCNAGLAGESEKWIERM 329 (575)
Q Consensus 274 li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 329 (575)
+..+.-+.|+.++|++.|++|.+.... -+......|+.++...+.+.++..++.+.
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 445555667777777777666654211 12334555666666666666666666655
|
The molecular function of this protein is uncertain. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.32 E-value=4.9 Score=38.34 Aligned_cols=47 Identities=15% Similarity=0.051 Sum_probs=22.4
Q ss_pred cCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 008183 249 AGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLE 295 (575)
Q Consensus 249 ~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 295 (575)
.|+..+|-..+++.+. +.|..+|+--=.+|..+|+.+.-...++++.
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIi 164 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKII 164 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhc
Confidence 3444444444444232 3445555555555555555555555555444
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.02 E-value=0.45 Score=28.29 Aligned_cols=33 Identities=15% Similarity=0.242 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 008183 372 AVWRALLSFSAIHGKADMASKMGKRLIDINPYD 404 (575)
Q Consensus 372 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 404 (575)
..|..+...+...|++++|.+.+++.++++|.+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356667777788888888888888888877754
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.53 E-value=1.5 Score=41.36 Aligned_cols=77 Identities=16% Similarity=0.169 Sum_probs=61.5
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 008183 236 VIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEM-----RGFAPDEYSFLA 308 (575)
Q Consensus 236 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~~ 308 (575)
..++..++..+..+|+++.+.+.+++.+. +-+...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 34567788899999999999988887433 56788999999999999999999999988865 477777776655
Q ss_pred HHHH
Q 008183 309 VLTA 312 (575)
Q Consensus 309 ll~a 312 (575)
...+
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5544
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=91.38 E-value=24 Score=38.19 Aligned_cols=77 Identities=8% Similarity=-0.054 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcc
Q 008183 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELA 215 (575)
Q Consensus 137 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 215 (575)
.-...+..+++.+++.+..+ |..-+..+...-.....+....|+.++|......+-..|. ........++..+.+.|
T Consensus 101 Lr~~~l~~La~~~~w~~~~~-~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~g 177 (644)
T PRK11619 101 LQSRFVNELARREDWRGLLA-FSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQSG 177 (644)
T ss_pred HHHHHHHHHHHccCHHHHHH-hcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHcC
Confidence 33444555566677777766 3322223444455666677777777777666666654442 22334455555554333
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.14 E-value=14 Score=34.94 Aligned_cols=144 Identities=13% Similarity=0.124 Sum_probs=77.0
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChH
Q 008183 277 GYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLE 356 (575)
Q Consensus 277 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 356 (575)
.....|+..+|..+|......... +...-..+..++...|+.+.|..++..+..+.. .........=|..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-DKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccch-hhHHHHHHHHHHHHHHHhcCC
Confidence 355667777777777766654322 234444566667777777777777765522110 000111122234444444444
Q ss_pred HHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCCchhHHHHHHHHHhCCCch
Q 008183 357 DAERIAMAMPFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDIN--PYDDSAYVIVANVLSGVGRWD 422 (575)
Q Consensus 357 ~A~~~~~~m~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~ 422 (575)
+...+-++..-.| |...--.|...+...|+.+.|.+.+-.+++.+ -.+...-..|+..+.-.|.-+
T Consensus 221 ~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 221 EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPAD 289 (304)
T ss_pred CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCC
Confidence 4444444443345 45555566666777777777766555555433 344555566666666665433
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.09 E-value=11 Score=33.78 Aligned_cols=197 Identities=17% Similarity=0.088 Sum_probs=109.5
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHH-HHH
Q 008183 204 VSGALRAAAELAAMEQCRVIHGHAVVS-GLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMA-GYA 279 (575)
Q Consensus 204 ~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~-~~~ 279 (575)
+......+...+.+..+...+...... ........+..+...+...+++..+.+.+..... ..+......... .+.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (291)
T COG0457 62 LLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALY 141 (291)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHH
Confidence 333333444444444444444433321 1233344444455555555556666666655222 111122222222 566
Q ss_pred HcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHhccCCh
Q 008183 280 QQGDQSTVLELFHLLEMRGF--APDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG--LEHYTCLISAMGRAGRL 355 (575)
Q Consensus 280 ~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~ 355 (575)
..|++++|...|.+...... ......+......+...++.+.+...+...... .++ ...+..+...+...+.+
T Consensus 142 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 142 ELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL---NPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh---CcccchHHHHHhhHHHHHcccH
Confidence 77777777777777644211 112333334444456677888888887766322 233 56677777777788888
Q ss_pred HHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 008183 356 EDAERIAMAM-PFEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDINPY 403 (575)
Q Consensus 356 ~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 403 (575)
++|...+... ...|+ ...+..+...+...+..+.+...+.+..+..|.
T Consensus 219 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 219 EEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 8888887776 33444 445555555555666788888888888887775
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=91.07 E-value=20 Score=36.58 Aligned_cols=103 Identities=17% Similarity=0.122 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCC-C-CCC--HHHHHHHH
Q 008183 303 EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMP-F-EPD--AAVWRALL 378 (575)
Q Consensus 303 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~-~p~--~~~~~~ll 378 (575)
..+=..+..++-+.|+.++|.+.+.+|.+.+...-.......|+..+...+.+.++..++.+-. + -|. ..+|+..+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 3333446666678899999999999996554322335577788999999999999999988773 1 233 55677666
Q ss_pred HHHHHcCCh---------------HHHHHHHHHHHhcCCCCc
Q 008183 379 SFSAIHGKA---------------DMASKMGKRLIDINPYDD 405 (575)
Q Consensus 379 ~~~~~~g~~---------------~~a~~~~~~~~~~~p~~~ 405 (575)
-.++..++- ..|.+...++.+.+|..+
T Consensus 339 LkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 339 LKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred HHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 444444331 235577888888887554
|
The molecular function of this protein is uncertain. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.05 E-value=6 Score=34.80 Aligned_cols=91 Identities=12% Similarity=0.064 Sum_probs=38.9
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCH--HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC---Cc----hhHH
Q 008183 169 YGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTM--YCVSGALRAAAELAAMEQCRVIHGHAVVSGLD---RN----VIVG 239 (575)
Q Consensus 169 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~---~~----~~~~ 239 (575)
+..+..-|.+.|+.++|++.|.++++....|.. ..+..+++.+.-.+++..+.....++...--. .+ ..+|
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~ 118 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVY 118 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 334444444444444444444444443333322 12334444444444444444444333222111 11 1222
Q ss_pred HHHHHHHHccCCHHHHHHHHhh
Q 008183 240 TGLIDGYGKAGIVSDARRVFDE 261 (575)
Q Consensus 240 ~~li~~~~~~g~~~~A~~~~~~ 261 (575)
..|.. ...|++..|-+.|-+
T Consensus 119 ~gL~~--l~~r~f~~AA~~fl~ 138 (177)
T PF10602_consen 119 EGLAN--LAQRDFKEAAELFLD 138 (177)
T ss_pred HHHHH--HHhchHHHHHHHHHc
Confidence 22222 235677777777766
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=90.73 E-value=10 Score=32.76 Aligned_cols=137 Identities=10% Similarity=0.182 Sum_probs=88.0
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccC--ChHHHHHHHHhC
Q 008183 288 LELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAG--RLEDAERIAMAM 365 (575)
Q Consensus 288 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m 365 (575)
.+..+.+.+.|++|+...+..++..+.+.|....-.+++. +++-+|.......+-.+.... -.+-|.+.+.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq-----~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ-----YHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh-----hcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHh
Confidence 4556677778899999999999999999998776665543 456666555444443333221 134455556665
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCCCc
Q 008183 366 PFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVR 437 (575)
Q Consensus 366 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 437 (575)
+ ..+..++..+...|++-+|.++.+.....+..++ ..++.+-.+.++...-..+++-..+++.+
T Consensus 89 ~-----~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~---~~fLeAA~~~~D~~lf~~V~~ff~~~n~~ 152 (167)
T PF07035_consen 89 G-----TAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPA---RKFLEAAANSNDDQLFYAVFRFFEERNLR 152 (167)
T ss_pred h-----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCH---HHHHHHHHHcCCHHHHHHHHHHHHHhhHh
Confidence 4 2345566777888999999988877644432222 34666666777766666677666665543
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.62 E-value=20 Score=35.91 Aligned_cols=406 Identities=11% Similarity=0.072 Sum_probs=215.8
Q ss_pred HHHHHHHhhCCCcccHHHHHHHHhHcCCChHHHHHHHccCCCCCh---hhHHHHHHHHhcCch---HHHHHHHHhhCCCC
Q 008183 20 IVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNI---VSWTALISAHSNSPL---SLNIFLSMLRHPTL 93 (575)
Q Consensus 20 ~~~~~~~~~g~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~---~~~~~li~~~~~~g~---a~~~~~~m~~~~~~ 93 (575)
++.+++.. .+.|..+|-.||+-|...|..++.++++++|..|-+ ..|..-|++-....+ ...+|.+.....
T Consensus 30 rLRerIkd-NPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~-- 106 (660)
T COG5107 30 RLRERIKD-NPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS-- 106 (660)
T ss_pred HHHHHhhc-CchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--
Confidence 45454433 236889999999999999999999999999987654 468877776443334 566777766643
Q ss_pred CcCCChhhHHHHHHHHhhch-----hhHHHHHHHHHHHHh-hCCCC-chhHHHHHHHHHH---------hCCChHHHHHH
Q 008183 94 SFLPNQRTLASLFKTCASLS-----HAFLFGLSLHSLSLK-LSLHD-KPFCGSALVHFYS---------RFRSPDNAKKV 157 (575)
Q Consensus 94 ~~~p~~~t~~~ll~~~~~~~-----~~~~~a~~~~~~~~~-~g~~~-~~~~~~~li~~~~---------~~g~~~~A~~~ 157 (575)
. +...|..-|.-.-+.. +.-...-+.++..+. .+++| +...|+..++..- .+.++|..++.
T Consensus 107 -l--~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~ 183 (660)
T COG5107 107 -L--NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNG 183 (660)
T ss_pred -c--cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 3 3444444443332222 011122233444333 24444 3344555554432 22344555666
Q ss_pred HHhcCC-C---------CcchHHHHHHHH-Hh--CC----CchHHHHHHHHhHH--CCCCc----CHHHHHHHHH-----
Q 008183 158 FDEIRE-R---------DVVCYGAMIVGF-AQ--NS----RLVDSLSVFADMRS--SDVGS----TMYCVSGALR----- 209 (575)
Q Consensus 158 f~~m~~-~---------~~~~~~~li~~~-~~--~g----~~~~A~~~~~~m~~--~g~~p----~~~t~~~ll~----- 209 (575)
+..+.. | |-..|..=+... ++ .| -+-.|...+++... .|++. +..|++.+-+
T Consensus 184 Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~ 263 (660)
T COG5107 184 YMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSN 263 (660)
T ss_pred HHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccch
Confidence 666554 1 222222111111 00 11 13355566666532 34322 2223332211
Q ss_pred ------HHHhc-----ccH--HHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC-CCChh------
Q 008183 210 ------AAAEL-----AAM--EQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS-VLNSI------ 269 (575)
Q Consensus 210 ------~~~~~-----~~~--~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~------ 269 (575)
-=... ++. +...-+|.+.+.. +.-...+|----.-+...++-+.|+......++ .|...
T Consensus 264 WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~~lse~ 342 (660)
T COG5107 264 WLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFLSEY 342 (660)
T ss_pred hhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchheeHHHH
Confidence 10000 111 1111233333332 223344444444445556777777777766444 22210
Q ss_pred ------------hHHHHHHHHHH---cCChHHHHHH------HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008183 270 ------------AWNAMMAGYAQ---QGDQSTVLEL------FHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIER 328 (575)
Q Consensus 270 ------------~~~~li~~~~~---~g~~~~A~~l------~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 328 (575)
+|..++..+.+ .++.+.+... ..+..-....-=...|...+.+-.+..-++.|+.+|-+
T Consensus 343 yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k 422 (660)
T COG5107 343 YELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIK 422 (660)
T ss_pred HhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 12222222111 1111111111 11110000111234567778887888888999999998
Q ss_pred HHHhcC-CCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHHH-HHHHHHHHHHcCChHHHHHHHHHHHhcCCC--
Q 008183 329 MKVRYK-LEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEPDAAV-WRALLSFSAIHGKADMASKMGKRLIDINPY-- 403 (575)
Q Consensus 329 m~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~-- 403 (575)
. .+.+ +.+++..+++++.-++ .|+...|.++|+-- .--||... -+-.+.-+...++-+.|..+|+..++.-..
T Consensus 423 ~-rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q 500 (660)
T COG5107 423 L-RKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQ 500 (660)
T ss_pred H-hccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhh
Confidence 8 5556 6778899999998766 67888899998754 33455333 355566667788888899999866652221
Q ss_pred CchhHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 404 DDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 404 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
-...|..++.--..-|+...|..+-++|.+.
T Consensus 501 ~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 501 LKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred hhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 2347888888888888888888777766543
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.25 E-value=2.6 Score=34.21 Aligned_cols=85 Identities=18% Similarity=0.121 Sum_probs=53.9
Q ss_pred HHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCC--HHHHHHHHHHHHhcCCH
Q 008183 245 GYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR-GFAPD--EYSFLAVLTALCNAGLA 319 (575)
Q Consensus 245 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~--~~t~~~ll~a~~~~g~~ 319 (575)
+.+..|+++.|++.|.+.+. +.....||.-..++--.|+.++|++-+++..+. |-+.- ...|..-...|...|+.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 45667788888888876444 556777888888888888888888777766543 32211 12233333345556777
Q ss_pred HHHHHHHHHH
Q 008183 320 GESEKWIERM 329 (575)
Q Consensus 320 ~~a~~~~~~m 329 (575)
+.|..=|+..
T Consensus 132 d~AR~DFe~A 141 (175)
T KOG4555|consen 132 DAARADFEAA 141 (175)
T ss_pred HHHHHhHHHH
Confidence 7777666655
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.11 E-value=10 Score=31.71 Aligned_cols=76 Identities=16% Similarity=0.130 Sum_probs=41.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHh
Q 008183 274 MMAGYAQQGDQSTVLELFHLLEMRGF--APDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMG 350 (575)
Q Consensus 274 li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 350 (575)
-.....+.|++++|.+.|+.+...=. +-....-..++.++.+.+++++|...+++.++-+--.|+ ..|...+.+++
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~ 93 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLS 93 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHH
Confidence 33445566777777777777665511 112344555666667777777777777666433322232 33444444444
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.00 E-value=4.2 Score=37.77 Aligned_cols=85 Identities=15% Similarity=0.157 Sum_probs=37.1
Q ss_pred HcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCh-hHHHHHHHHHhccCChH
Q 008183 280 QQGDQSTVLELFHLLEMRGFA--PDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGL-EHYTCLISAMGRAGRLE 356 (575)
Q Consensus 280 ~~g~~~~A~~l~~~m~~~g~~--p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~ 356 (575)
+.|++.+|...|....+.... -....+-.|..++...|+++.|..+|..+..+++-.|.. ..+--|.....+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 344455555555555544211 011223335555555555555555555554443333321 33333333344444444
Q ss_pred HHHHHHHh
Q 008183 357 DAERIAMA 364 (575)
Q Consensus 357 ~A~~~~~~ 364 (575)
+|...|++
T Consensus 233 ~A~atl~q 240 (262)
T COG1729 233 EACATLQQ 240 (262)
T ss_pred HHHHHHHH
Confidence 44444433
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=89.63 E-value=31 Score=37.28 Aligned_cols=47 Identities=19% Similarity=0.159 Sum_probs=31.2
Q ss_pred cccHHHHHHHHhHcCCChHHHHHHHccCC---CCChhhHHHHHHHHhcCch
Q 008183 32 DRSIYNNLITNYSKSNLLSYSLRLFNHIP---SPNIVSWTALISAHSNSPL 79 (575)
Q Consensus 32 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~ 79 (575)
+..+|. +|--+.+||.+++|.++..+.. .+....+-..+..|+.+.+
T Consensus 111 ~~p~Wa-~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~ 160 (613)
T PF04097_consen 111 GDPIWA-LIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPD 160 (613)
T ss_dssp TEEHHH-HHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTS
T ss_pred CCccHH-HHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCC
Confidence 344554 6777889999999999994333 3445566777888877533
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=89.58 E-value=23 Score=35.01 Aligned_cols=148 Identities=16% Similarity=0.034 Sum_probs=72.6
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC--hh
Q 008183 266 LNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAP---DEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG--LE 340 (575)
Q Consensus 266 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~ 340 (575)
....+|..+...+.+.|+++.|...+..+...+..+ +......-....-..|+.++|...++..... .+..+ ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc
Confidence 344567777888888888888888888777643211 2222223334445567778888777766431 11111 11
Q ss_pred HHHHHHHHHhccCChHHHHHH-HHhCCCCCCHHHHHHHHHHHHHc------CChHHHHHHHHHHHhcCCCCchhHHHHHH
Q 008183 341 HYTCLISAMGRAGRLEDAERI-AMAMPFEPDAAVWRALLSFSAIH------GKADMASKMGKRLIDINPYDDSAYVIVAN 413 (575)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~-~~~m~~~p~~~~~~~ll~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 413 (575)
....+...+.. ..+..... ........-...+..+..-+... ++.+++...+..+.+..|....+|..+..
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 11111111100 00000000 00000000012222222222233 67788888888888888877777666655
Q ss_pred HHH
Q 008183 414 VLS 416 (575)
Q Consensus 414 ~~~ 416 (575)
.+.
T Consensus 301 ~~~ 303 (352)
T PF02259_consen 301 FND 303 (352)
T ss_pred HHH
Confidence 553
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=89.10 E-value=16 Score=35.20 Aligned_cols=62 Identities=16% Similarity=0.234 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh-cCC--HHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 008183 285 STVLELFHLLEMRGFAPD-EYSFLAVLTALCN-AGL--AGESEKWIERMKVRYKLEPGLEHYTCLIS 347 (575)
Q Consensus 285 ~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~-~g~--~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 347 (575)
+.++.+|+.+.+.|+..+ ..-+.+-+-++.. ... ..++.++++.+ .+.++++...+|..+.-
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l-~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNAL-KKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHH-HHcCCccccccccHHHH
Confidence 455667777777776543 3233333333332 222 44677778877 56688887777765543
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.63 E-value=20 Score=33.15 Aligned_cols=159 Identities=19% Similarity=0.227 Sum_probs=92.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhcc
Q 008183 275 MAGYAQQGDQSTVLELFHLLEMRGF--APDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRA 352 (575)
Q Consensus 275 i~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 352 (575)
+..-.+.|++++|.+.|+.+....+ +-...+...++-++.+.+++++|....++....++-.||+. |...+.+++.-
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~YlkgLs~~ 119 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLKGLSYF 119 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHHHHHHh
Confidence 3344566777777777777765421 12244555566666667777777777777666655555531 22222222211
Q ss_pred -------CChHHHHHHHHhC-------C---CCCCHHHHH------------HHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 008183 353 -------GRLEDAERIAMAM-------P---FEPDAAVWR------------ALLSFSAIHGKADMASKMGKRLIDINPY 403 (575)
Q Consensus 353 -------g~~~~A~~~~~~m-------~---~~p~~~~~~------------~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 403 (575)
.+...+.+.|..+ | ..||+..-- .+..-|.+.|.+..|..-++++++.-|.
T Consensus 120 ~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~ 199 (254)
T COG4105 120 FQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPD 199 (254)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccc
Confidence 2222233333222 2 223432211 2235577889999999999999886554
Q ss_pred Cch---hHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 404 DDS---AYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 404 ~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
... ++..+..+|...|-.++|.+.-+-+...
T Consensus 200 t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 200 TSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred ccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 433 5667788999999999999887766543
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=88.26 E-value=4 Score=31.58 Aligned_cols=60 Identities=15% Similarity=0.081 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 008183 286 TVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLIS 347 (575)
Q Consensus 286 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 347 (575)
+..+-++.+....+.|+.....+.|.||.+.+++..|.++|+.++.+.+-. ...|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 455556666667789999999999999999999999999999887665533 337776664
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=88.00 E-value=26 Score=34.13 Aligned_cols=147 Identities=12% Similarity=0.099 Sum_probs=71.2
Q ss_pred hCCChHHHHHHHHhcCCC------CcchHHHHHHHHHhCCCchHHHHHHHHhHHC--CCCcCH---HHHHHHHHHHHhcc
Q 008183 147 RFRSPDNAKKVFDEIRER------DVVCYGAMIVGFAQNSRLVDSLSVFADMRSS--DVGSTM---YCVSGALRAAAELA 215 (575)
Q Consensus 147 ~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~---~t~~~ll~~~~~~~ 215 (575)
...+.+.|+..+.+-.++ -..+|..+..+..+.|.+++++..--.-... ...-.. ..|..+.++..+.-
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777787777665442 2346777788888888888776542221110 001111 12333333333333
Q ss_pred cHHHHHHHHHHHHHh-CCCC---chhHHHHHHHHHHccCCHHHHHHHHhhhCC------CC--ChhhHHHHHHHHHHcCC
Q 008183 216 AMEQCRVIHGHAVVS-GLDR---NVIVGTGLIDGYGKAGIVSDARRVFDENLS------VL--NSIAWNAMMAGYAQQGD 283 (575)
Q Consensus 216 ~~~~a~~~~~~~~~~-g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~--~~~~~~~li~~~~~~g~ 283 (575)
++.++.++-..-... |..| .-.+.-++..+....+.++++++.|+.++. ++ ....+-.|.+.|.+..+
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence 333333333322221 1111 112333445555555666666666665443 11 12345555566666666
Q ss_pred hHHHHHHHHH
Q 008183 284 QSTVLELFHL 293 (575)
Q Consensus 284 ~~~A~~l~~~ 293 (575)
+++|.-+..+
T Consensus 178 ~~Kal~f~~k 187 (518)
T KOG1941|consen 178 YEKALFFPCK 187 (518)
T ss_pred hhHHhhhhHh
Confidence 6666554443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=87.98 E-value=1.3 Score=27.03 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHH
Q 008183 270 AWNAMMAGYAQQGDQSTVLELFHLL 294 (575)
Q Consensus 270 ~~~~li~~~~~~g~~~~A~~l~~~m 294 (575)
+|+.|...|.+.|++++|+++|++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3555666666666666666666663
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=87.95 E-value=25 Score=33.53 Aligned_cols=181 Identities=9% Similarity=0.010 Sum_probs=77.7
Q ss_pred CCchhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCc----hHHHHHHHHhHHCCCCcCHHHHHHH
Q 008183 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRL----VDSLSVFADMRSSDVGSTMYCVSGA 207 (575)
Q Consensus 132 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~t~~~l 207 (575)
.+|..+....+..+.+.|..+-...+..-+..+|...-...+.++.+.|+. .+++.++..+... .|+...-...
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A 111 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASA 111 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHH
Confidence 445555555555555555433333333333344555555555566666653 3455555555322 3444444444
Q ss_pred HHHHHhcccHHH--HHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcC-Ch
Q 008183 208 LRAAAELAAMEQ--CRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQG-DQ 284 (575)
Q Consensus 208 l~~~~~~~~~~~--a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g-~~ 284 (575)
+.++...+.... .......+...-..++..+....+.++++.|+- +|...+-.++..+|...-..-+.++.+.+ ..
T Consensus 112 ~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~ 190 (280)
T PRK09687 112 INATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDE-AAIPLLINLLKDPNGDVRNWAAFALNSNKYDN 190 (280)
T ss_pred HHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCH-HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC
Confidence 444444321110 011122222212233445555555555555542 34444333344444433333333333332 12
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 008183 285 STVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL 318 (575)
Q Consensus 285 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 318 (575)
..+...+..+.. .+|...-...+.++.+.++
T Consensus 191 ~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~ 221 (280)
T PRK09687 191 PDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD 221 (280)
T ss_pred HHHHHHHHHHhc---CCChHHHHHHHHHHHccCC
Confidence 234444333332 2344444444555555554
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.93 E-value=21 Score=38.60 Aligned_cols=179 Identities=12% Similarity=0.087 Sum_probs=117.7
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCch--hHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHH
Q 008183 203 CVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNV--IVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQ 280 (575)
Q Consensus 203 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~ 280 (575)
+....|....+...++.|..+- ...+.+++. .+.....+-+.+.|++++|...|-+.+...+. .-+|.-|..
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LA---k~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~---s~Vi~kfLd 409 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLA---KSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP---SEVIKKFLD 409 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHH---HhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh---HHHHHHhcC
Confidence 4455666666666666665543 334444432 23344455667889999999998775552222 346777777
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHH
Q 008183 281 QGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAER 360 (575)
Q Consensus 281 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 360 (575)
..+..+-..+++.+.+.|+. +...-..|+.+|.+.++.+.-.++.+.. .+ |.- ..-....+..+.+.+-+++|..
T Consensus 410 aq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~-~~-g~~--~fd~e~al~Ilr~snyl~~a~~ 484 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKC-DK-GEW--FFDVETALEILRKSNYLDEAEL 484 (933)
T ss_pred HHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcC-CC-cce--eeeHHHHHHHHHHhChHHHHHH
Confidence 78888888889999999876 4444456899999999999888876644 21 111 1123456777788888899988
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008183 361 IAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRL 397 (575)
Q Consensus 361 ~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 397 (575)
+-.+.+. +......++ -..+++++|.+.++.+
T Consensus 485 LA~k~~~--he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 485 LATKFKK--HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHhcc--CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 8877753 333334443 4568899998887654
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=87.89 E-value=31 Score=35.01 Aligned_cols=142 Identities=9% Similarity=0.070 Sum_probs=67.3
Q ss_pred CChHHHHHHHccCCCCCh---hhH--HHHHHHHhcC----ch----HHHHHHHHhhCCCCCcCCChhhHHHHHHHHhhch
Q 008183 47 NLLSYSLRLFNHIPSPNI---VSW--TALISAHSNS----PL----SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLS 113 (575)
Q Consensus 47 g~~~~A~~~f~~m~~~~~---~~~--~~li~~~~~~----g~----a~~~~~~m~~~~~~~~~p~~~t~~~ll~~~~~~~ 113 (575)
..+..++. -...++.+. ..| ...++|.... .. |+.+|.+...... ..|+-..-...+.-|--.+
T Consensus 232 ~~~~~~E~-~~r~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~--ldp~~a~a~~~lA~~h~~~ 308 (458)
T PRK11906 232 QTVHKPER-SVRLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSD--IQTLKTECYCLLAECHMSL 308 (458)
T ss_pred hhhhhhhh-hhcCCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhccc--CCcccHHHHHHHHHHHHHH
Confidence 44444444 233334455 667 7777776552 22 8888988873211 5565432222222221111
Q ss_pred ---------hhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCC--CC-cchHHHHHHHHHhCCC
Q 008183 114 ---------HAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE--RD-VVCYGAMIVGFAQNSR 181 (575)
Q Consensus 114 ---------~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~-~~~~~~li~~~~~~g~ 181 (575)
.+...|.++-+..++.+ +.|+.....+-....-.|+++.|..+|++... || ..+|........-+|+
T Consensus 309 ~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~ 387 (458)
T PRK11906 309 ALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEK 387 (458)
T ss_pred HHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC
Confidence 13444445555555444 34444444444444455555555555555433 22 2233333333344555
Q ss_pred chHHHHHHHHh
Q 008183 182 LVDSLSVFADM 192 (575)
Q Consensus 182 ~~~A~~~~~~m 192 (575)
.++|.+.+++.
T Consensus 388 ~~~a~~~i~~a 398 (458)
T PRK11906 388 IEEARICIDKS 398 (458)
T ss_pred HHHHHHHHHHH
Confidence 55555555553
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.84 E-value=24 Score=33.20 Aligned_cols=61 Identities=11% Similarity=0.127 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhh
Q 008183 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 373 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 433 (575)
+.+.....|...|.+.+|.++.++.+.++|-+...+-.|++.|...|+--.|.+-++++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3445567889999999999999999999999999999999999999998888888877753
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.84 E-value=22 Score=32.63 Aligned_cols=202 Identities=13% Similarity=0.054 Sum_probs=109.9
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHc
Q 008183 169 YGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGK 248 (575)
Q Consensus 169 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 248 (575)
|.--..+|-...++++|-.-+.+..+ +..-|...|. .....+.|--+.+++.+. +.-+..++--..+|..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~-~yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASK-GYENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHH-HHHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence 33344556666667776665555432 1111111111 112233444444444432 2234556777788899
Q ss_pred cCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHc---CC--CCCHHHHHHHHHHHHhcCCHHHHH
Q 008183 249 AGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR---GF--APDEYSFLAVLTALCNAGLAGESE 323 (575)
Q Consensus 249 ~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~--~p~~~t~~~ll~a~~~~g~~~~a~ 323 (575)
+|..+.|-..++++- -...+-++++|+++|++-..- +- +--..-+..+-..+.+...+++|-
T Consensus 104 ~GspdtAAmaleKAa-------------k~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa 170 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAA-------------KALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAA 170 (308)
T ss_pred hCCcchHHHHHHHHH-------------HHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHH
Confidence 998888777776611 123456677888877765432 11 111122333334445556666665
Q ss_pred HHHHHHHH---hcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC---C--CCC-CHHHHHHHHHHHHHcCChHHHHHH
Q 008183 324 KWIERMKV---RYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM---P--FEP-DAAVWRALLSFSAIHGKADMASKM 393 (575)
Q Consensus 324 ~~~~~m~~---~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m---~--~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 393 (575)
..+.+-.. +..--|+ -..|-+.|-.|.-..++..|.+.++.- | ..| +..+...||.+| ..||.+++..+
T Consensus 171 ~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 171 TAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 54432210 0011122 244566666777788999999999884 3 223 578888899887 45777777665
Q ss_pred H
Q 008183 394 G 394 (575)
Q Consensus 394 ~ 394 (575)
+
T Consensus 250 l 250 (308)
T KOG1585|consen 250 L 250 (308)
T ss_pred H
Confidence 4
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=87.66 E-value=0.99 Score=27.50 Aligned_cols=25 Identities=12% Similarity=0.064 Sum_probs=12.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHH
Q 008183 374 WRALLSFSAIHGKADMASKMGKRLI 398 (575)
Q Consensus 374 ~~~ll~~~~~~g~~~~a~~~~~~~~ 398 (575)
|..|...|.+.|++++|..++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555555533
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=87.42 E-value=5.2 Score=30.62 Aligned_cols=63 Identities=16% Similarity=0.081 Sum_probs=48.5
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 008183 283 DQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLIS 347 (575)
Q Consensus 283 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 347 (575)
+..++.+-++.+....+.|+.....+.+.||.+.+++..|.++|+.++.+.+- +...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 34456666677777789999999999999999999999999999988655443 4446666653
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.38 E-value=6 Score=37.45 Aligned_cols=101 Identities=8% Similarity=0.018 Sum_probs=75.9
Q ss_pred hCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCC-C------CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCH
Q 008183 129 LSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE-R------DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTM 201 (575)
Q Consensus 129 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 201 (575)
.|.+.+..+...++..-....+++++...+-.+.. | +... .+.++-+ -.=++++++.++..=.+-|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irll-lky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHH-HccChHHHHHHHhCcchhccccch
Confidence 45666677777888877778889999888877654 2 2211 2233333 334678999999888889999999
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q 008183 202 YCVSGALRAAAELAAMEQCRVIHGHAVVSG 231 (575)
Q Consensus 202 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 231 (575)
+|+..+++.+.+.+++..|.++.-.|+...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999999999999999988888777654
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.95 E-value=24 Score=32.15 Aligned_cols=17 Identities=12% Similarity=0.386 Sum_probs=11.7
Q ss_pred HHHccCCHHHHHHHHhh
Q 008183 245 GYGKAGIVSDARRVFDE 261 (575)
Q Consensus 245 ~~~~~g~~~~A~~~~~~ 261 (575)
.++-.+.+++|-++|.+
T Consensus 23 lfgg~~k~eeAadl~~~ 39 (288)
T KOG1586|consen 23 LFGGSNKYEEAAELYER 39 (288)
T ss_pred ccCCCcchHHHHHHHHH
Confidence 34455677888888776
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=86.90 E-value=1.3 Score=26.29 Aligned_cols=30 Identities=17% Similarity=0.237 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 008183 373 VWRALLSFSAIHGKADMASKMGKRLIDINP 402 (575)
Q Consensus 373 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 402 (575)
+|..+...+...|+.++|...+++.++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 456666677777777777777777777666
|
... |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.48 E-value=8.7 Score=36.74 Aligned_cols=161 Identities=14% Similarity=0.089 Sum_probs=117.6
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHH----HHHHHHhccCCh
Q 008183 280 QQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYT----CLISAMGRAGRL 355 (575)
Q Consensus 280 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~----~li~~~~~~g~~ 355 (575)
-.|+..+|-..++++.+. .+.|...+.-.=.+|...|+.+.-...++++..+ ..||...|. .+.-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 478888888889998876 5668888888889999999999999999888543 356654443 334455689999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-CC---chhHHHHHHHHHhCCCchHHHHHHH
Q 008183 356 EDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINP-YD---DSAYVIVANVLSGVGRWDEVAEVRK 429 (575)
Q Consensus 356 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p-~~---~~~~~~l~~~~~~~g~~~~a~~~~~ 429 (575)
++|++.-++. .+.| |.-+-.++...+...|+..++.++..+-...=. .. ...|-...-.+...+.++.|..+|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999998887 4555 566677788888889999999998776543111 11 1234456667778899999999998
Q ss_pred HHhhCCCccCCcee
Q 008183 430 VMKDRRVRKEGGRS 443 (575)
Q Consensus 430 ~m~~~~~~~~~~~s 443 (575)
.=.-+.+.++++++
T Consensus 272 ~ei~k~l~k~Da~a 285 (491)
T KOG2610|consen 272 REIWKRLEKDDAVA 285 (491)
T ss_pred HHHHHHhhccchhh
Confidence 76555555555543
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.38 E-value=4.2 Score=35.82 Aligned_cols=88 Identities=16% Similarity=0.148 Sum_probs=67.1
Q ss_pred HhccCChHHHHHHHHhC----CCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCc
Q 008183 349 MGRAGRLEDAERIAMAM----PFEP---DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRW 421 (575)
Q Consensus 349 ~~~~g~~~~A~~~~~~m----~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 421 (575)
+.+.|++++|..-|... |-.+ -.+.|..=..++.+.+.++.|..-..+.++++|....+...-..+|.+...+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 45678888887776655 2111 1344555556778889999999999999999998877777778899999999
Q ss_pred hHHHHHHHHHhhCCC
Q 008183 422 DEVAEVRKVMKDRRV 436 (575)
Q Consensus 422 ~~a~~~~~~m~~~~~ 436 (575)
++|..-++++.+...
T Consensus 185 eealeDyKki~E~dP 199 (271)
T KOG4234|consen 185 EEALEDYKKILESDP 199 (271)
T ss_pred HHHHHHHHHHHHhCc
Confidence 999999998887543
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=86.23 E-value=19 Score=31.64 Aligned_cols=93 Identities=17% Similarity=0.160 Sum_probs=42.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC--CC----hhHH
Q 008183 271 WNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDE--YSFLAVLTALCNAGLAGESEKWIERMKVRYKLE--PG----LEHY 342 (575)
Q Consensus 271 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~--p~----~~~~ 342 (575)
+..+..-|.+.|+.++|++.|.++.+....|.. ..+..+|..+...+++..+.....+...-..-. ++ ...|
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~ 118 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVY 118 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 333444455555555555555555444333322 233445555555555555555554442111110 11 1223
Q ss_pred HHHHHHHhccCChHHHHHHHHhC
Q 008183 343 TCLISAMGRAGRLEDAERIAMAM 365 (575)
Q Consensus 343 ~~li~~~~~~g~~~~A~~~~~~m 365 (575)
..|. +...|++.+|-+.|-..
T Consensus 119 ~gL~--~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 119 EGLA--NLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHH--HHHhchHHHHHHHHHcc
Confidence 3332 23356777777776655
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=85.75 E-value=15 Score=31.79 Aligned_cols=23 Identities=13% Similarity=0.102 Sum_probs=11.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHH
Q 008183 274 MMAGYAQQGDQSTVLELFHLLEM 296 (575)
Q Consensus 274 li~~~~~~g~~~~A~~l~~~m~~ 296 (575)
|.-+-.+.|++.+|.+.|..+..
T Consensus 173 LglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 173 LGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HhHHHHhccchHHHHHHHHHHHc
Confidence 33344455555555555555544
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.32 E-value=28 Score=31.36 Aligned_cols=179 Identities=15% Similarity=0.104 Sum_probs=86.1
Q ss_pred CCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008183 250 GIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIE 327 (575)
Q Consensus 250 g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 327 (575)
|-++-|+--|.+.+. +.-...||-+.--+...|+++.|.+.|+...+....-+-...|.-| ++.-.|++..|.+-+.
T Consensus 79 GL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~ 157 (297)
T COG4785 79 GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLL 157 (297)
T ss_pred hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHH
Confidence 334444444443222 2233456666666667777777777777666643322222222222 2233466666665444
Q ss_pred HHHHhcCCCCChhHHHHHHHHHhccCChHHHHH-HHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--
Q 008183 328 RMKVRYKLEPGLEHYTCLISAMGRAGRLEDAER-IAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYD-- 404 (575)
Q Consensus 328 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~-~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-- 404 (575)
..-....-.|-...|--++ -+.-++.+|.. +.++.. ..|..-|..-|-.+.- |++. .+.+++++.+...++
T Consensus 158 ~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~ 231 (297)
T COG4785 158 AFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTS 231 (297)
T ss_pred HHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHH
Confidence 3322211112122222222 22334555543 333332 3444555544443322 2111 122333333322222
Q ss_pred -----chhHHHHHHHHHhCCCchHHHHHHHHHhhCC
Q 008183 405 -----DSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435 (575)
Q Consensus 405 -----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 435 (575)
..+|.-|..-|...|+.++|..+|+.....+
T Consensus 232 ~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 232 LAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 3478889999999999999999998766543
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=85.28 E-value=4 Score=26.09 Aligned_cols=28 Identities=21% Similarity=0.335 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 008183 270 AWNAMMAGYAQQGDQSTVLELFHLLEMR 297 (575)
Q Consensus 270 ~~~~li~~~~~~g~~~~A~~l~~~m~~~ 297 (575)
+|..+...|.+.|++++|+++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444555555566666666666555553
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=85.16 E-value=23 Score=30.28 Aligned_cols=88 Identities=14% Similarity=0.109 Sum_probs=50.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCCCChh-HHHHHHHHHhccCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChHH
Q 008183 312 ALCNAGLAGESEKWIERMKVRYKLEPGLE-HYTCLISAMGRAGRLEDAERIAMAMP-FEPDAAVWRALLSFSAIHGKADM 389 (575)
Q Consensus 312 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~g~~~~ 389 (575)
.-.+.++.+++..++..+. -+.|... .-..-...+.+.|++.+|.++|+++. -.|....-..|+..|.....-..
T Consensus 19 ~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 3345678888888888773 3456532 22222334677888888888888883 23333334455555554443333
Q ss_pred HHHHHHHHHhcCC
Q 008183 390 ASKMGKRLIDINP 402 (575)
Q Consensus 390 a~~~~~~~~~~~p 402 (575)
=....+++.+.++
T Consensus 96 Wr~~A~evle~~~ 108 (160)
T PF09613_consen 96 WRRYADEVLESGA 108 (160)
T ss_pred HHHHHHHHHhcCC
Confidence 3444555555554
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=85.15 E-value=20 Score=29.49 Aligned_cols=60 Identities=10% Similarity=0.122 Sum_probs=39.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008183 271 WNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV 331 (575)
Q Consensus 271 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 331 (575)
.+.-+..+...|+-+.-.++++++.+ +-.|+......+..||.+.|+..++.+++.+..+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 34456667778888888888877765 3456777777788888888888888888877743
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=85.03 E-value=4 Score=34.78 Aligned_cols=54 Identities=22% Similarity=0.319 Sum_probs=29.0
Q ss_pred ccCChHHHHHHHHhCC-CCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCch
Q 008183 351 RAGRLEDAERIAMAMP-FEPD---AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDS 406 (575)
Q Consensus 351 ~~g~~~~A~~~~~~m~-~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 406 (575)
+.++.+++..++..+. ++|. ..++... .+...|++.+|.++++.+.+..|..+.
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~--l~i~r~~w~dA~rlLr~l~~~~~~~p~ 79 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGW--LHIVRGDWDDALRLLRELEERAPGFPY 79 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHH--HHHHhCCHHHHHHHHHHHhccCCCChH
Confidence 4566666666666662 3443 2233222 234566666666666666555554443
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.64 E-value=9.9 Score=36.06 Aligned_cols=98 Identities=13% Similarity=0.181 Sum_probs=73.1
Q ss_pred hCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC-CC--------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 008183 230 SGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS-VL--------NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFA 300 (575)
Q Consensus 230 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~--------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 300 (575)
.|.+....+...++..-....+++++...+-+ +. .| ...+|-- ++-.-++++++-++..=.+.|+-
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyK-lRhs~~a~~~~~~~~~~~ir----lllky~pq~~i~~l~npIqYGiF 132 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYK-LRHSPNAWYLRNWTIHTWIR----LLLKYDPQKAIYTLVNPIQYGIF 132 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHH-HhcCcchhhhccccHHHHHH----HHHccChHHHHHHHhCcchhccc
Confidence 35555666667777777777888888888766 43 22 2223322 33345788999999888899999
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008183 301 PDEYSFLAVLTALCNAGLAGESEKWIERMKVR 332 (575)
Q Consensus 301 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 332 (575)
||..|++.+++.+.+.+++.+|.++.-.|..+
T Consensus 133 ~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 133 PDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred cchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 99999999999999999999998888777554
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=84.64 E-value=7 Score=34.72 Aligned_cols=77 Identities=21% Similarity=0.141 Sum_probs=44.9
Q ss_pred HhcCch--HHHHHHHHhhCCCCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhC---CCCchhHHHHHHHHHHhC
Q 008183 74 HSNSPL--SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLS---LHDKPFCGSALVHFYSRF 148 (575)
Q Consensus 74 ~~~~g~--a~~~~~~m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g---~~~~~~~~~~li~~~~~~ 148 (575)
+.+.|+ |++.|-.+...+ .. +....-..|..+.... |.+++.+++-.+++.. -.+|+.++.+|++.|-+.
T Consensus 117 Wsr~~d~~A~~~fL~~E~~~---~l-~t~elq~aLAtyY~kr-D~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~ 191 (203)
T PF11207_consen 117 WSRFGDQEALRRFLQLEGTP---EL-ETAELQYALATYYTKR-DPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKL 191 (203)
T ss_pred hhccCcHHHHHHHHHHcCCC---CC-CCHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHh
Confidence 455566 777777776655 33 3344444444444445 6667776666665542 245666666777777666
Q ss_pred CChHHHH
Q 008183 149 RSPDNAK 155 (575)
Q Consensus 149 g~~~~A~ 155 (575)
|+++.|.
T Consensus 192 ~~~e~AY 198 (203)
T PF11207_consen 192 KNYEQAY 198 (203)
T ss_pred cchhhhh
Confidence 6666653
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=84.30 E-value=45 Score=32.89 Aligned_cols=66 Identities=18% Similarity=0.255 Sum_probs=54.1
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC----CCchhHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 369 PDAAVWRALLSFSAIHGKADMASKMGKRLIDINP----YDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 369 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
....+|..+...+++.|.++.|...+.++.+.++ ..+.....-+......|+.++|...++...+.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3467899999999999999999999999887552 24556677788899999999999998887763
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=84.03 E-value=4.2 Score=34.03 Aligned_cols=51 Identities=18% Similarity=0.146 Sum_probs=26.1
Q ss_pred cCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 384 HGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 384 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
.++.++++.++..+.-+.|..+..-..-...+...|+|++|.++|+.+.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 445555555555555555554444444444455555555555555555443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=83.73 E-value=28 Score=30.12 Aligned_cols=133 Identities=17% Similarity=0.073 Sum_probs=70.0
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 008183 222 VIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAP 301 (575)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 301 (575)
++.+.+.+.+++|+...+..+++.+.+.|++..-..++.- ++-|
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~------------------------------------~Vi~ 58 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY------------------------------------HVIP 58 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh------------------------------------cccC
Confidence 3444555667777777777777777777776655555443 3444
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008183 302 DEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFS 381 (575)
Q Consensus 302 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~ 381 (575)
|.......+-.... ....+.++=-.|..+.+ ..+..+++.+...|++-+|.++.+..+ .-+......++.+-
T Consensus 59 DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkRL~-----~~~~~iievLL~~g~vl~ALr~ar~~~-~~~~~~~~~fLeAA 130 (167)
T PF07035_consen 59 DSKPLACQLLSLGN--QYPPAYQLGLDMLKRLG-----TAYEEIIEVLLSKGQVLEALRYARQYH-KVDSVPARKFLEAA 130 (167)
T ss_pred CcHHHHHHHHHhHc--cChHHHHHHHHHHHHhh-----hhHHHHHHHHHhCCCHHHHHHHHHHcC-CcccCCHHHHHHHH
Confidence 44444433322221 22223333222322211 135566777778888888888887753 12222224455555
Q ss_pred HHcCChHHHHHHHHHHH
Q 008183 382 AIHGKADMASKMGKRLI 398 (575)
Q Consensus 382 ~~~g~~~~a~~~~~~~~ 398 (575)
.+.+|...--.+++-..
T Consensus 131 ~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 131 ANSNDDQLFYAVFRFFE 147 (167)
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 55555544444444333
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.54 E-value=41 Score=31.88 Aligned_cols=52 Identities=17% Similarity=0.125 Sum_probs=35.8
Q ss_pred HHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC
Q 008183 211 AAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS 264 (575)
Q Consensus 211 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 264 (575)
....++...+..+++...... +-+...--.+...|...|+.+.|..++.. ++
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~-lP 195 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAA-LP 195 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHh-Cc
Confidence 445677777777777776653 33455566677778888888888888877 55
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=83.24 E-value=2.7 Score=26.13 Aligned_cols=28 Identities=11% Similarity=0.162 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008183 372 AVWRALLSFSAIHGKADMASKMGKRLID 399 (575)
Q Consensus 372 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 399 (575)
.+++.|...|...|++++|+.+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3455555555566666666655555543
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.96 E-value=20 Score=37.25 Aligned_cols=148 Identities=16% Similarity=0.038 Sum_probs=100.1
Q ss_pred cCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHH
Q 008183 249 AGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYS-FLAVLTALCNAGLAGESEKWIE 327 (575)
Q Consensus 249 ~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~ 327 (575)
.|+++.|..++-. ++ ...-+.++.-+-+.|-.++|+++ .||... |.. ..+.|+++.|.++..
T Consensus 599 rrd~~~a~~vLp~-I~---k~~rt~va~Fle~~g~~e~AL~~---------s~D~d~rFel----al~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 599 RRDLEVADGVLPT-IP---KEIRTKVAHFLESQGMKEQALEL---------STDPDQRFEL----ALKLGRLDIAFDLAV 661 (794)
T ss_pred hcccccccccccc-Cc---hhhhhhHHhHhhhccchHhhhhc---------CCChhhhhhh----hhhcCcHHHHHHHHH
Confidence 4666666665554 44 22334455556667777776654 333322 322 246799999988766
Q ss_pred HHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchh
Q 008183 328 RMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSA 407 (575)
Q Consensus 328 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 407 (575)
+. .+..-|..|.++..+.|++..|.+.|.+.. -|..|+-.+...|+.+.-..+.....+.+..|.
T Consensus 662 e~-------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~-- 726 (794)
T KOG0276|consen 662 EA-------NSEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNL-- 726 (794)
T ss_pred hh-------cchHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccch--
Confidence 44 346678999999999999999999988753 256777778888887776666666666665443
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHH
Q 008183 408 YVIVANVLSGVGRWDEVAEVRKVM 431 (575)
Q Consensus 408 ~~~l~~~~~~~g~~~~a~~~~~~m 431 (575)
-..+|...|+++++.+++..-
T Consensus 727 ---AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 727 ---AFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred ---HHHHHHHcCCHHHHHHHHHhc
Confidence 345678899999988887643
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.74 E-value=79 Score=34.55 Aligned_cols=115 Identities=9% Similarity=-0.008 Sum_probs=71.1
Q ss_pred HHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHH----HHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhc
Q 008183 139 SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAM----IVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAEL 214 (575)
Q Consensus 139 ~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~l----i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 214 (575)
..-+++..+..-++.|..+-+.-.. |...-..+ ..-+.+.|++++|..-|-+-... +.|. .++.-+-..
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLda 410 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDA 410 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCH
Confidence 4456666677777777777655433 22222222 23345678888888877765432 2232 233444444
Q ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhh
Q 008183 215 AAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDE 261 (575)
Q Consensus 215 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 261 (575)
.....-..+++.+.+.|+ .+...-+.|+++|.|.++.++-.++.+.
T Consensus 411 q~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~ 456 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISK 456 (933)
T ss_pred HHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhc
Confidence 555555667777777774 4556677788888888888887777776
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=82.65 E-value=2.2 Score=25.64 Aligned_cols=24 Identities=21% Similarity=0.105 Sum_probs=13.4
Q ss_pred CCchhHHHHHHHHHHccCCHHHHH
Q 008183 233 DRNVIVGTGLIDGYGKAGIVSDAR 256 (575)
Q Consensus 233 ~~~~~~~~~li~~~~~~g~~~~A~ 256 (575)
|-+...|+.|...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 344555555555666666555553
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=82.61 E-value=23 Score=30.62 Aligned_cols=121 Identities=16% Similarity=0.141 Sum_probs=74.2
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChh-HHHHHHH--HHhccC
Q 008183 278 YAQQGDQSTVLELFHLLEMRGFAPD-EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLE-HYTCLIS--AMGRAG 353 (575)
Q Consensus 278 ~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~--~~~~~g 353 (575)
+++.+..++|+.-|.++.+.|...= ............+.|+...|...|.++... .-.|... -...|=. .+...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHHHHHHHhccc
Confidence 4566778888888888877764321 112222333456778888888888887433 2233321 2222222 345678
Q ss_pred ChHHHHHHHHhCCC--CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008183 354 RLEDAERIAMAMPF--EPD-AAVWRALLSFSAIHGKADMASKMGKRLID 399 (575)
Q Consensus 354 ~~~~A~~~~~~m~~--~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 399 (575)
.+++.....+.+.. .|- ...-..|.-+-.+.|++..|.+.|..+..
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 88888877777731 222 33445566666788888888888888776
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=81.59 E-value=50 Score=31.50 Aligned_cols=19 Identities=16% Similarity=0.120 Sum_probs=14.6
Q ss_pred HHHHhCCCchHHHHHHHHH
Q 008183 413 NVLSGVGRWDEVAEVRKVM 431 (575)
Q Consensus 413 ~~~~~~g~~~~a~~~~~~m 431 (575)
....+.++|++|.+.++--
T Consensus 254 ~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 254 KKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHhhcCHHHHHHHHHHH
Confidence 4466789999999988743
|
It is also involved in sporulation []. |
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=81.25 E-value=62 Score=32.38 Aligned_cols=184 Identities=17% Similarity=0.178 Sum_probs=115.6
Q ss_pred cCCHHHHHHHHhhhCC----CCChhhHHHHHHH-HHHcCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHH
Q 008183 249 AGIVSDARRVFDENLS----VLNSIAWNAMMAG-YAQQGDQSTVLELFHLLEMR--GFAPDEYSFLAVLTALCNAGLAGE 321 (575)
Q Consensus 249 ~g~~~~A~~~~~~~~~----~~~~~~~~~li~~-~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~a~~~~g~~~~ 321 (575)
.|+-++|.+.+.. +. ++....|-+|+.+ .....++.+|+++|+...-. |--.......--+....+.|+.++
T Consensus 125 ~Gr~~~a~~~La~-i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~r 203 (421)
T PRK12798 125 SGRGREARKLLAG-VAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADK 203 (421)
T ss_pred cCCHHHHHHHhhc-CChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHH
Confidence 5778888888877 54 3445567777666 44566888999999887653 222223445555556788999999
Q ss_pred HHHHHHHHHHhcCCCCChhHH-HHHHHHHh---ccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008183 322 SEKWIERMKVRYKLEPGLEHY-TCLISAMG---RAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRL 397 (575)
Q Consensus 322 a~~~~~~m~~~~~~~p~~~~~-~~li~~~~---~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 397 (575)
+..+-..+..++.-.|-..-| ..+...+. ..-..+.-..++..|.-.--...|-.+...-...|+.+.|...-++.
T Consensus 204 f~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A 283 (421)
T PRK12798 204 FEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERA 283 (421)
T ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 988887777776655543322 22333333 33345555666777742223678888888889999999999999998
Q ss_pred HhcCCCCchhHHHHHHHHH-----hCCCchHHHHHHHHHhhC
Q 008183 398 IDINPYDDSAYVIVANVLS-----GVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 398 ~~~~p~~~~~~~~l~~~~~-----~~g~~~~a~~~~~~m~~~ 434 (575)
..+... ...-...+..|. -..+++++.+.+..+-..
T Consensus 284 ~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~ 324 (421)
T PRK12798 284 LKLADP-DSADAARARLYRGAALVASDDAESALEELSQIDRD 324 (421)
T ss_pred HHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcCChh
Confidence 886632 222233444443 234456666665554433
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=81.19 E-value=1.1 Score=37.77 Aligned_cols=84 Identities=5% Similarity=0.066 Sum_probs=58.3
Q ss_pred HHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchH
Q 008183 105 LFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVD 184 (575)
Q Consensus 105 ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~ 184 (575)
++..+.+.+ .+.....+++.+.+.+...+....+.|+..|++.++.+...++++.... .-...++..|-+.|.+++
T Consensus 13 vi~~~~~~~-~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 13 VISAFEERN-QPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CHHHCTTTT--GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHhCC-CHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 455666666 7777778888888777667788889999999999888888888774332 333456666666677767
Q ss_pred HHHHHHHh
Q 008183 185 SLSVFADM 192 (575)
Q Consensus 185 A~~~~~~m 192 (575)
|.-++.++
T Consensus 89 a~~Ly~~~ 96 (143)
T PF00637_consen 89 AVYLYSKL 96 (143)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHc
Confidence 66666655
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=80.83 E-value=3.7 Score=24.26 Aligned_cols=27 Identities=26% Similarity=0.327 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008183 270 AWNAMMAGYAQQGDQSTVLELFHLLEM 296 (575)
Q Consensus 270 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 296 (575)
+|..+...|...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455566666666666666666666655
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=80.05 E-value=15 Score=28.18 Aligned_cols=62 Identities=10% Similarity=-0.022 Sum_probs=44.0
Q ss_pred chHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 008183 182 LVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLID 244 (575)
Q Consensus 182 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 244 (575)
.-++.+-++.+....+.|++....+.++||.+.+++..|.++++-+.... ..+...|..+++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 34566666777777888999999999999999999999998888776331 223345555543
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 52.9 bits (125), Expect = 2e-07
Identities = 30/211 (14%), Positives = 67/211 (31%), Gaps = 8/211 (3%)
Query: 242 LIDGYGKAGIVSDARRVFD------ENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLE 295
+ A + + +L +NA+M G+A+QG ++ + +++
Sbjct: 133 FFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK 192
Query: 296 MRGFAPDEYSFLAVLTALCNAGLAGES-EKWIERMKVRYKLEPGLEHYTCLISAMGRAGR 354
G PD S+ A L + + E+ +E+M + L+ L+S RA
Sbjct: 193 DAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMS-QEGLKLQALFTAVLLSEEDRATV 251
Query: 355 LEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANV 414
L+ ++ P D K + + +
Sbjct: 252 LKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHME 311
Query: 415 LSGVGRWDEVAEVRKVMKDRRVRKEGGRSWI 445
L+ V + K+ + ++ ++
Sbjct: 312 LASRVCVVSVEKPTLPSKEVKHARKTLKTLR 342
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 4e-06
Identities = 28/188 (14%), Positives = 58/188 (30%), Gaps = 16/188 (8%)
Query: 246 YGKAGIVSDARRVFDE--NLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDE 303
Y A+ + E + A++ +++ + D+ +L L ++ ++
Sbjct: 210 YTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEE--WDLVLKLNYSTYSKED 267
Query: 304 YSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRA----GRLEDAE 359
+FL L E + R + GLE + L+ R D
Sbjct: 268 AAFLRSL--YMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVL 325
Query: 360 RIAM-AMPFEPDAAVWRALLSFSAIH---GKADMASKMGKRLIDINPYDDSAYVIVANVL 415
I + +P A G+ + + L+D +P ++ V
Sbjct: 326 AITTKILEIDPYNL--DVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYY 383
Query: 416 SGVGRWDE 423
V + E
Sbjct: 384 LCVNKISE 391
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 41.7 bits (97), Expect = 6e-04
Identities = 30/161 (18%), Positives = 57/161 (35%), Gaps = 9/161 (5%)
Query: 270 AWNAMMAGYAQQGDQSTVLELF-HLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIER 328
+ N + +QG+ + L+ LE+ +S LA L G E+ +
Sbjct: 11 SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLAS--VLQQQGKLQEALMHYKE 68
Query: 329 MKVRYKLEPGL-EHYTCLISAMGRAGRLEDAER-IAMAMPFEPD-AAVWRALLSFSAIHG 385
++ P + Y+ + + + ++ A + A+ P A L S G
Sbjct: 69 A---IRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSG 125
Query: 386 KADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAE 426
A + + + P AY +A+ L V W + E
Sbjct: 126 NIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDE 166
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 575 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.9 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.89 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.88 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.88 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.85 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.82 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.81 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.8 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.78 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.77 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.77 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.76 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.76 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.74 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.73 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.72 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.71 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.71 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.71 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.7 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.7 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.7 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.69 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.68 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.65 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.65 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.65 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.64 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.59 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.58 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.57 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.56 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.55 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.5 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.49 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.49 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.49 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.48 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.48 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.48 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.48 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.46 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.46 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.45 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.43 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.42 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.42 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.41 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.41 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.41 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.4 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.4 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.39 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.38 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.36 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.33 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.31 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.31 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.3 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.3 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.3 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.29 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.27 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.25 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.24 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.24 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.23 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.19 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.18 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.17 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.16 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.16 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.14 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.14 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.08 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.07 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.06 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.05 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.02 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.0 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.93 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.91 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.9 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.86 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.86 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.86 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.83 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.83 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.83 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.8 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.76 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.76 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.73 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.69 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.68 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.66 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.65 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.64 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.64 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.63 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.61 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.6 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.6 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.6 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.59 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.55 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.55 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.53 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.52 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.51 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.5 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.5 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.5 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.47 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.47 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.47 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.44 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.43 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.41 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.4 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.38 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.36 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.34 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.32 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.31 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.3 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.3 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.3 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.3 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.29 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.26 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.24 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.22 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.22 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.2 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.2 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.2 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.18 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.17 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.17 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.16 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.14 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.14 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.14 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.13 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.12 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.12 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.12 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.11 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.08 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.08 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.08 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.07 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.07 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.05 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.04 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.02 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 97.99 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.97 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.96 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.94 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.93 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.93 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.93 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.91 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.87 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.86 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.86 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.86 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.85 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.84 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.83 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.82 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.8 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.8 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.8 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.77 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.76 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.76 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.74 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.63 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.63 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.62 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.61 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.58 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.55 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.55 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.5 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.5 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.49 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.44 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.26 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.25 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.22 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.18 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.18 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.16 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.09 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.08 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.08 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.97 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.92 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.9 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.89 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.84 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 96.75 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.74 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.71 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.61 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.31 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.17 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.13 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.1 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.86 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 95.52 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.42 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.15 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 94.93 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.82 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 93.95 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 93.58 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 93.58 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 93.16 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 92.4 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 91.97 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 91.69 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 91.54 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 91.35 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 90.94 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 90.5 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 90.29 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 90.23 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 90.22 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 88.72 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 88.05 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 87.6 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 86.88 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 86.39 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 84.49 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 84.43 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 82.64 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 82.48 | |
| 2qx5_A | 661 | Nucleoporin NIC96; mRNA transport, nuclear pore co | 82.46 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 81.87 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 81.36 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 81.23 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-36 Score=320.27 Aligned_cols=416 Identities=11% Similarity=-0.027 Sum_probs=362.4
Q ss_pred CCCCccHHHHHHHHHhhCCCcccHHHHHHHHhHcCCChHHHHHHHccC--CCCChhhHHHHHHHHhcCch---HHHHHHH
Q 008183 12 QNTSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHI--PSPNIVSWTALISAHSNSPL---SLNIFLS 86 (575)
Q Consensus 12 ~~~~~~~~~~~~~~~~~g~~~~~~~~~li~~~~~~g~~~~A~~~f~~m--~~~~~~~~~~li~~~~~~g~---a~~~~~~ 86 (575)
.++.+.|..++..+.+.. |+..++..+...|.+.|++++|..+|+++ ..++..+|+.++.+|.+.|+ |+++|++
T Consensus 97 ~g~~~~A~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 175 (597)
T 2xpi_A 97 QQQYKCAAFVGEKVLDIT-GNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGE 175 (597)
T ss_dssp TTCHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCS
T ss_pred ccCchHHHHHHHHHHhhC-CCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhc
Confidence 455667788888887432 67788999999999999999999999998 47899999999999999999 9999985
Q ss_pred HhhCC------------CCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhH-----------------
Q 008183 87 MLRHP------------TLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC----------------- 137 (575)
Q Consensus 87 m~~~~------------~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~----------------- 137 (575)
+.... ..+.+++..+|+.+..++.+.| +++.|..+++.+.+.+.. +...
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~ 253 (597)
T 2xpi_A 176 TNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLS-NFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWD 253 (597)
T ss_dssp SCTTC----------CCCSSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHH
T ss_pred cCCccccccccccccccccccchhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHH
Confidence 32211 0013456889999999999999 999999999999987632 3333
Q ss_pred ---------------------HHHHHHHHHhCCChHHHHHHHHhcCC--CCcchHHHHHHHHHhCCCchHHHHHHHHhHH
Q 008183 138 ---------------------GSALVHFYSRFRSPDNAKKVFDEIRE--RDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194 (575)
Q Consensus 138 ---------------------~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 194 (575)
|+.++.+|.+.|++++|.++|+++.+ ++..+|+.++.+|.+.|++++|+++|+++.+
T Consensus 254 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 333 (597)
T 2xpi_A 254 LVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILE 333 (597)
T ss_dssp HHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 23336677788999999999999987 7999999999999999999999999999987
Q ss_pred CCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHH
Q 008183 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWN 272 (575)
Q Consensus 195 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ 272 (575)
.+ +.+..++..++.++.+.|++++|.++++.+.+.. +.+..+++.++.+|.+.|++++|.++|++++. +.+..+|+
T Consensus 334 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 411 (597)
T 2xpi_A 334 ID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWI 411 (597)
T ss_dssp HC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHH
Confidence 64 3367789999999999999999999999999764 66789999999999999999999999998543 56788999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhcc
Q 008183 273 AMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRA 352 (575)
Q Consensus 273 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 352 (575)
.++.+|.+.|++++|+++|++|.+.+ +++..++..++.+|.+.|++++|.++|+++.... +.+..+|+.++..|.+.
T Consensus 412 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~ 488 (597)
T 2xpi_A 412 GFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF--QYDPLLLNELGVVAFNK 488 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHh
Confidence 99999999999999999999999864 3478999999999999999999999999995432 33588999999999999
Q ss_pred CChHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchH
Q 008183 353 GRLEDAERIAMAM-------PFEPD--AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDE 423 (575)
Q Consensus 353 g~~~~A~~~~~~m-------~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 423 (575)
|++++|.++|+++ +..|+ ..+|..++.+|.+.|++++|.+.++++.+.+|.++.+|..++.+|.+.|++++
T Consensus 489 g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 568 (597)
T 2xpi_A 489 SDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGL 568 (597)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHH
Confidence 9999999999988 45787 88999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCC
Q 008183 424 VAEVRKVMKDRR 435 (575)
Q Consensus 424 a~~~~~~m~~~~ 435 (575)
|.+.++++.+..
T Consensus 569 A~~~~~~~l~~~ 580 (597)
T 2xpi_A 569 AITHLHESLAIS 580 (597)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhcC
Confidence 999999998753
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-35 Score=311.74 Aligned_cols=378 Identities=9% Similarity=-0.037 Sum_probs=318.5
Q ss_pred HHhHcCCChHHHHHHHccCCCCChhhHHHHHHHHhcCch---HHHHHHHHhhCCCCCcCCChhhHHHHHHHHhhchhhHH
Q 008183 41 TNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFL 117 (575)
Q Consensus 41 ~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~---a~~~~~~m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~ 117 (575)
..+.++|.+..+...|+.++.+++..|+.++.+|.+.|+ |+.+|++|.. ..||..++..+..+|...| +++
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~l~~~~~~~g-~~~ 134 (597)
T 2xpi_A 61 NNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD-----ITGNPNDAFWLAQVYCCTG-DYA 134 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HHCCHHHHHHHHHHHHHTT-CHH
T ss_pred ccccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh-----hCCCchHHHHHHHHHHHcC-cHH
Confidence 446678889999999999999999999999999999998 9999999996 6789999999999999999 999
Q ss_pred HHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCCC-------------------CcchHHHHHHHHHh
Q 008183 118 FGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRER-------------------DVVCYGAMIVGFAQ 178 (575)
Q Consensus 118 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-------------------~~~~~~~li~~~~~ 178 (575)
.|..+++.+... ++++.+++.++.+|.++|++++|.++|+++... ++.+|+.++.+|.+
T Consensus 135 ~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 212 (597)
T 2xpi_A 135 RAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTN 212 (597)
T ss_dssp HHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHH
Confidence 999999988653 678999999999999999999999999964433 47899999999999
Q ss_pred CCCchHHHHHHHHhHHCCCCcC-HHHH--------------------------------------HHHHHHHHhcccHHH
Q 008183 179 NSRLVDSLSVFADMRSSDVGST-MYCV--------------------------------------SGALRAAAELAAMEQ 219 (575)
Q Consensus 179 ~g~~~~A~~~~~~m~~~g~~p~-~~t~--------------------------------------~~ll~~~~~~~~~~~ 219 (575)
.|++++|+++|++|.+.+ |+ ...+ ..++..|.+.|++++
T Consensus 213 ~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 290 (597)
T 2xpi_A 213 LSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRR 290 (597)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHH
Confidence 999999999999998754 33 2222 222455667899999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 008183 220 CRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR 297 (575)
Q Consensus 220 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 297 (575)
|.++++.+.+. +++..+++.++.+|.+.|++++|.++|++++. +.+..+|+.++.+|.+.|++++|.++|+++.+.
T Consensus 291 A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 368 (597)
T 2xpi_A 291 AEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR 368 (597)
T ss_dssp HHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Confidence 99999998876 68999999999999999999999999998553 557889999999999999999999999999865
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHH
Q 008183 298 GFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEP-GLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVW 374 (575)
Q Consensus 298 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~ 374 (575)
.+.+..++..++..|.+.|++++|.++|+++... .| +..+|+.++.+|.+.|++++|.++|+++ ...| +..+|
T Consensus 369 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 444 (597)
T 2xpi_A 369 -HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM---DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPY 444 (597)
T ss_dssp -CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHH
T ss_pred -CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHH
Confidence 3457889999999999999999999999998542 44 4789999999999999999999999988 3344 78999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 375 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
..++.+|.+.|++++|.++++++.+..|.++.+|..++.+|.+.|++++|.++|+++.+.
T Consensus 445 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 504 (597)
T 2xpi_A 445 LFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLL 504 (597)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999765
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=261.15 Aligned_cols=181 Identities=12% Similarity=0.083 Sum_probs=87.7
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcc---------cHHHHHHHHHHHHHhCCCCchhHH
Q 008183 169 YGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELA---------AMEQCRVIHGHAVVSGLDRNVIVG 239 (575)
Q Consensus 169 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~---------~~~~a~~~~~~~~~~g~~~~~~~~ 239 (575)
++.+|.+|++.|++++|+++|++|.+.|++||..||+++|.+|+..+ .++.|.++|++|.+.|+.||..+|
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 44444444444444444444444444444444444444444444322 234444444444444444444445
Q ss_pred HHHHHHHHccCCHHHHHHHHhhhCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 008183 240 TGLIDGYGKAGIVSDARRVFDENLS---VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316 (575)
Q Consensus 240 ~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 316 (575)
|+||.+|++.|++++|.++|++|.. .||..+||+||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 5555555555555555444444211 3444455555555555555555555555555555555555555555555555
Q ss_pred CCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHh
Q 008183 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMG 350 (575)
Q Consensus 317 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 350 (575)
|++++|.+++++| .+.+..|+..||+.++..|+
T Consensus 189 g~~d~A~~ll~~M-r~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 189 KNADKVYKTLQRL-RDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp TCHHHHHHHHHHH-HHHTSSBCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-HHhCCCcCHHHHHHHHHHHh
Confidence 5555555555555 33345555555555554444
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5.1e-29 Score=257.02 Aligned_cols=211 Identities=13% Similarity=0.077 Sum_probs=169.8
Q ss_pred HHHHHHHHhhCCCCCcCCCh-hhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHH
Q 008183 80 SLNIFLSMLRHPTLSFLPNQ-RTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVF 158 (575)
Q Consensus 80 a~~~~~~m~~~~~~~~~p~~-~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f 158 (575)
+..+++++.+.+ ..+.. ..++.+|.+|++.| +++.|.++++.|.+.|+.||..+||+||.+|++.+...++
T Consensus 9 ~e~L~~~~~~k~---~~~spe~~l~~~id~c~k~G-~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~---- 80 (501)
T 4g26_A 9 SENLSRKAKKKA---IQQSPEALLKQKLDMCSKKG-DVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES---- 80 (501)
T ss_dssp ------------------CHHHHHHHHHHHTTTSC-CHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS----
T ss_pred HHHHHHHHHHhc---ccCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh----
Confidence 455566666655 44332 34677777777777 7777777777777777777777777777777776654332
Q ss_pred HhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhH
Q 008183 159 DEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIV 238 (575)
Q Consensus 159 ~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 238 (575)
.+.+..++|+++|++|...|+.||..||+++|.+|++.|++++|.+++++|.+.|+.||..+
T Consensus 81 ------------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t 142 (501)
T 4g26_A 81 ------------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRS 142 (501)
T ss_dssp ------------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred ------------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccce
Confidence 23445788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCHHHHHHHHhhhCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008183 239 GTGLIDGYGKAGIVSDARRVFDENLS---VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315 (575)
Q Consensus 239 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 315 (575)
||+||.+|++.|++++|.++|++|.. .||..+|++||.+|++.|+.++|.++|++|.+.|..|+..||+.++..++.
T Consensus 143 yn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 143 YGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred ehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 99999999999999999999999444 789999999999999999999999999999999999999999999999876
Q ss_pred c
Q 008183 316 A 316 (575)
Q Consensus 316 ~ 316 (575)
.
T Consensus 223 ~ 223 (501)
T 4g26_A 223 E 223 (501)
T ss_dssp H
T ss_pred C
Confidence 4
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-24 Score=218.95 Aligned_cols=370 Identities=14% Similarity=0.021 Sum_probs=295.4
Q ss_pred HHHhHcCCChHHHHHHHccCC--CC-ChhhHHHHHHHHhcCch---HHHHHHHHhhCCCCCcCCChhhHHHHHHHHhhch
Q 008183 40 ITNYSKSNLLSYSLRLFNHIP--SP-NIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLS 113 (575)
Q Consensus 40 i~~~~~~g~~~~A~~~f~~m~--~~-~~~~~~~li~~~~~~g~---a~~~~~~m~~~~~~~~~p~~~t~~~ll~~~~~~~ 113 (575)
...+.+.|++++|.+.|+.+. .| +...+..+...+...|+ |...++...+. .+.+..+|..+...+...|
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~----~p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ----NPLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCchHHHHHHHHHHHHCC
Confidence 455677899999999887764 34 44455555566666666 88888887764 3457778888888888888
Q ss_pred hhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCC--C-CcchHHHHHHHHHhCCCchHHHHHHH
Q 008183 114 HAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE--R-DVVCYGAMIVGFAQNSRLVDSLSVFA 190 (575)
Q Consensus 114 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~ 190 (575)
+++.|...++.+++.. +.+...+..+...|.+.|++++|.+.|+++.+ | +...+..+...+...|++++|++.|+
T Consensus 82 -~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 82 -QLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp -CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 9999999999988865 44566788888999999999999999988754 4 44567778888888899999999999
Q ss_pred HhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCCh
Q 008183 191 DMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNS 268 (575)
Q Consensus 191 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~ 268 (575)
++.+.. +-+..++..+...+...|++++|...++.+++.. +.+...+..+...+...|++++|.+.|++++. +.+.
T Consensus 160 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 237 (388)
T 1w3b_A 160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA 237 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCH
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCH
Confidence 887742 2346788888888899999999999999988875 45677888888899999999999999887444 4567
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 008183 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISA 348 (575)
Q Consensus 269 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 348 (575)
.+|+.+...|.+.|++++|++.|+++.+... .+..++..+..++.+.|++++|...++++... .+.+..++..+...
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHH
Confidence 8888899999999999999999999887532 25677888888899999999999999888543 23457888889999
Q ss_pred HhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCC
Q 008183 349 MGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGR 420 (575)
Q Consensus 349 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 420 (575)
+.+.|++++|...++++ ...| +..+|..+...+.+.|++++|...++++++..|.++.+|..+...+...|+
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999999887 4455 478888899999999999999999999999989888888888888776653
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-23 Score=212.42 Aligned_cols=347 Identities=12% Similarity=0.061 Sum_probs=299.1
Q ss_pred HhcCch---HHHHHHHHhhCCCCCcCCChh-hHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCC
Q 008183 74 HSNSPL---SLNIFLSMLRHPTLSFLPNQR-TLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFR 149 (575)
Q Consensus 74 ~~~~g~---a~~~~~~m~~~~~~~~~p~~~-t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 149 (575)
+.+.|+ |++.|..+.+ ..|+.. .+..+...+...+ +++.+...+...++.. +.+..++..+...|.+.|
T Consensus 9 ~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~~l~~~~~~~~-~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 9 EYQAGDFEAAERHCMQLWR-----QEPDNTGVLLLLSSIHFQCR-RLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 444555 9999999887 446554 4444555566677 9999999999998875 667889999999999999
Q ss_pred ChHHHHHHHHhcCC--C-CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcC-HHHHHHHHHHHHhcccHHHHHHHHH
Q 008183 150 SPDNAKKVFDEIRE--R-DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGST-MYCVSGALRAAAELAAMEQCRVIHG 225 (575)
Q Consensus 150 ~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~ 225 (575)
++++|...|+++.+ | +..+|..+..++.+.|++++|++.|+++.+. .|+ ...+..+...+...|++++|.+.+.
T Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999999998754 4 4567999999999999999999999999875 454 4466777888889999999999999
Q ss_pred HHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH
Q 008183 226 HAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDE 303 (575)
Q Consensus 226 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 303 (575)
.+++.. +.+..+++.+...|.+.|++++|.+.|++++. +.+...|..+...+...|++++|+..|++..... +.+.
T Consensus 160 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~ 237 (388)
T 1w3b_A 160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCH
Confidence 999874 55678999999999999999999999998554 5567789999999999999999999999998763 2357
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CC-CCCHHHHHHHHHH
Q 008183 304 YSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM-PF-EPDAAVWRALLSF 380 (575)
Q Consensus 304 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~ 380 (575)
.++..+..++...|++++|...|+++.. ..|+ ..+|..+...|.+.|++++|.+.|+++ .. .++..+|..+...
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence 8899999999999999999999998853 3454 678999999999999999999999988 23 3468999999999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 381 SAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 381 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
+...|++++|...++++++..|.+..++..++.+|.+.|++++|...++++.+.
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999864
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=3.4e-21 Score=198.16 Aligned_cols=309 Identities=12% Similarity=0.019 Sum_probs=258.5
Q ss_pred CCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCC---CCcchHHHH
Q 008183 96 LPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE---RDVVCYGAM 172 (575)
Q Consensus 96 ~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~l 172 (575)
+.+...+..+...+.+.| +++.|..++..+++.. +.+..++..+...|.+.|++++|...|+++.+ .+..+|..+
T Consensus 23 p~~~~~~~~~~~~~~~~g-~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAG-QLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQR 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 446677788888888888 9999999999888764 45678888889999999999999999988754 356788889
Q ss_pred HHHHHhCCCchHHHHHHHHhHHCCCCcCH----HHHHHH------------HHHHHhcccHHHHHHHHHHHHHhCCCCch
Q 008183 173 IVGFAQNSRLVDSLSVFADMRSSDVGSTM----YCVSGA------------LRAAAELAAMEQCRVIHGHAVVSGLDRNV 236 (575)
Q Consensus 173 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~l------------l~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 236 (575)
...|.+.|++++|++.|+++.+. .|+. ..+..+ ...+...|++++|...+..+.+.. +.+.
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 177 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDA 177 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCh
Confidence 99999999999999999998764 4543 344444 444788999999999999998875 5678
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHH----
Q 008183 237 IVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPD-EYSFLAV---- 309 (575)
Q Consensus 237 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~l---- 309 (575)
.++..+..+|.+.|++++|.+.|++++. +.+..+|+.+...|...|++++|+..|+++... .|+ ...+..+
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~ 255 (450)
T 2y4t_A 178 ELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVK 255 (450)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHH
Confidence 8999999999999999999999998554 567889999999999999999999999999875 343 3444333
Q ss_pred --------HHHHHhcCCHHHHHHHHHHHHHhcCCCCC-----hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHH
Q 008183 310 --------LTALCNAGLAGESEKWIERMKVRYKLEPG-----LEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVW 374 (575)
Q Consensus 310 --------l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~ 374 (575)
..++.+.|++++|..+|+.+... .|+ ..+|..+...+.+.|++++|...++++ ...| +..+|
T Consensus 256 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 332 (450)
T 2y4t_A 256 KLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNAL 332 (450)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHH
Confidence 78889999999999999998543 455 457889999999999999999999987 4455 68999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 008183 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANV 414 (575)
Q Consensus 375 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 414 (575)
..+..+|...|++++|...++++++..|.++.++..+..+
T Consensus 333 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 333 KDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 9999999999999999999999999999999888888743
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.2e-20 Score=195.38 Aligned_cols=391 Identities=8% Similarity=-0.064 Sum_probs=311.7
Q ss_pred cHHHHHHHHhHcCCChHHHHHHHccCC--CCChhhHHHHHHHHhcCch---HHHHHHHHhhCCCCCcCCChhhHHHHHHH
Q 008183 34 SIYNNLITNYSKSNLLSYSLRLFNHIP--SPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKT 108 (575)
Q Consensus 34 ~~~~~li~~~~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~---a~~~~~~m~~~~~~~~~p~~~t~~~ll~~ 108 (575)
..+..+-..|.+.|++++|...|+++. .|+...|..+...+.+.|+ |+..|+++.+.. +.+..++..+..+
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK----PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC----hHHHHHHHHHHHH
Confidence 345667788899999999999999885 5888999999999998888 999999998842 3456788888899
Q ss_pred HhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHH------------------------------
Q 008183 109 CASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVF------------------------------ 158 (575)
Q Consensus 109 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f------------------------------ 158 (575)
+...| +++.|...+..+.+.+. ++......++..+.+......+.+.+
T Consensus 83 ~~~~g-~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (514)
T 2gw1_A 83 NEGLG-KFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS 160 (514)
T ss_dssp HHHTT-CHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCC
T ss_pred HHHHh-hHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCch
Confidence 99999 99999999999988874 34444444444443322222222221
Q ss_pred --------HhcCC---------C-CcchHHHHHHHHHh---CCCchHHHHHHHHhHH-----CCCCc--------CHHHH
Q 008183 159 --------DEIRE---------R-DVVCYGAMIVGFAQ---NSRLVDSLSVFADMRS-----SDVGS--------TMYCV 204 (575)
Q Consensus 159 --------~~m~~---------~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~p--------~~~t~ 204 (575)
..... | +...|......+.. .|++++|+..|+++.+ ....| +..++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (514)
T 2gw1_A 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISL 240 (514)
T ss_dssp HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHH
T ss_pred hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHH
Confidence 11100 1 13334444444444 8999999999999987 32122 34577
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcC
Q 008183 205 SGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQG 282 (575)
Q Consensus 205 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g 282 (575)
..+...+...|++++|...+..+.+... +...+..+...|...|++++|.+.|+.++. +.+...|..+...|...|
T Consensus 241 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 241 EHTGIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhC
Confidence 7888889999999999999999998853 388899999999999999999999998555 457788999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHH
Q 008183 283 DQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIA 362 (575)
Q Consensus 283 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 362 (575)
++++|+..|++..+.... +..++..+...+...|++++|..+++.+.... +.+...+..+...|.+.|++++|...+
T Consensus 319 ~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp CTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999886433 56788889999999999999999999885432 234778899999999999999999999
Q ss_pred HhC----CCCCC----HHHHHHHHHHHHH---cCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHH
Q 008183 363 MAM----PFEPD----AAVWRALLSFSAI---HGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVM 431 (575)
Q Consensus 363 ~~m----~~~p~----~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 431 (575)
+++ +..++ ..+|..+...+.. .|++++|...++++++..|.++.++..++.+|...|++++|...+++.
T Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 887 22233 4589999999999 999999999999999999999999999999999999999999999998
Q ss_pred hhCC
Q 008183 432 KDRR 435 (575)
Q Consensus 432 ~~~~ 435 (575)
.+..
T Consensus 476 ~~~~ 479 (514)
T 2gw1_A 476 ADLA 479 (514)
T ss_dssp HHHC
T ss_pred HHhc
Confidence 8753
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-20 Score=196.46 Aligned_cols=390 Identities=9% Similarity=-0.074 Sum_probs=308.4
Q ss_pred CCCCccHHHHHHHHHhhCCCcccHHHHHHHHhHcCCChHHHHHHHccCC---CCChhhHHHHHHHHhcCch---HHHHHH
Q 008183 12 QNTSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIP---SPNIVSWTALISAHSNSPL---SLNIFL 85 (575)
Q Consensus 12 ~~~~~~~~~~~~~~~~~g~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~---a~~~~~ 85 (575)
.+....|...+..+++.. |++..+..+...|.+.|++++|.+.|+++. +.+...|..+...+...|+ |+..|+
T Consensus 19 ~g~~~~A~~~~~~al~~~-p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 97 (514)
T 2gw1_A 19 NKKYDDAIKYYNWALELK-EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLS 97 (514)
T ss_dssp TSCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHhcC-ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 466778899999998876 688999999999999999999999999874 4566789999999999998 999999
Q ss_pred HHhhCCCCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhh-----------------------------------C
Q 008183 86 SMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKL-----------------------------------S 130 (575)
Q Consensus 86 ~m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~-----------------------------------g 130 (575)
++...+ +++......++..+.... ....+.+.+..+... .
T Consensus 98 ~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (514)
T 2gw1_A 98 VLSLNG----DFNDASIEPMLERNLNKQ-AMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFK 172 (514)
T ss_dssp HHHHSS----SCCGGGTHHHHHHHHHHH-HHHHHTTC---------------------------CCCCHHHHHHHHTTSC
T ss_pred HHHhcC----CCccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcC
Confidence 999864 345555555555554433 333332222111100 0
Q ss_pred C---------CCchhHHHHHHHHHHh---CCChHHHHHHHHhcCC----------------C-CcchHHHHHHHHHhCCC
Q 008183 131 L---------HDKPFCGSALVHFYSR---FRSPDNAKKVFDEIRE----------------R-DVVCYGAMIVGFAQNSR 181 (575)
Q Consensus 131 ~---------~~~~~~~~~li~~~~~---~g~~~~A~~~f~~m~~----------------~-~~~~~~~li~~~~~~g~ 181 (575)
. +.+...+..+...+.. .|++++|...|+++.+ | +..+|..+...+...|+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (514)
T 2gw1_A 173 PELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKND 252 (514)
T ss_dssp CCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCC
Confidence 0 1113334444444443 8999999999988654 1 34578889999999999
Q ss_pred chHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhh
Q 008183 182 LVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDE 261 (575)
Q Consensus 182 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 261 (575)
+++|+..|+++.+.. |+...+..+...+...|++++|...+..+.+.. +.+..++..+...|...|++++|...|++
T Consensus 253 ~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 329 (514)
T 2gw1_A 253 PLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDK 329 (514)
T ss_dssp HHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999999999998864 447788899999999999999999999998764 55788899999999999999999999998
Q ss_pred hCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-
Q 008183 262 NLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG- 338 (575)
Q Consensus 262 ~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~- 338 (575)
++. +.+...|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+.....-.++
T Consensus 330 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 408 (514)
T 2gw1_A 330 AKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGI 408 (514)
T ss_dssp HHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSC
T ss_pred HHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchH
Confidence 543 5567889999999999999999999999998763 335678888999999999999999999988544322222
Q ss_pred ---hhHHHHHHHHHhc---cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHH
Q 008183 339 ---LEHYTCLISAMGR---AGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVI 410 (575)
Q Consensus 339 ---~~~~~~li~~~~~---~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 410 (575)
...+..+...|.. .|++++|...|++. ...| +..+|..+...+...|++++|...++++.+..|.++..+..
T Consensus 409 ~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 488 (514)
T 2gw1_A 409 YVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQA 488 (514)
T ss_dssp SSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHH
Confidence 3489999999999 99999999999887 3344 58889999999999999999999999999999988776655
Q ss_pred H
Q 008183 411 V 411 (575)
Q Consensus 411 l 411 (575)
+
T Consensus 489 ~ 489 (514)
T 2gw1_A 489 I 489 (514)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.88 E-value=7.1e-20 Score=188.25 Aligned_cols=345 Identities=9% Similarity=-0.027 Sum_probs=213.7
Q ss_pred hHHHHHHHHhcCch---HHHHHHHHhhCCCCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHH
Q 008183 66 SWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALV 142 (575)
Q Consensus 66 ~~~~li~~~~~~g~---a~~~~~~m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 142 (575)
.|..+...+.+.|+ |+.+|+++.+. .+.+..++..+..++...| +++.|...+..+++.+ +.+..++..+.
T Consensus 28 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 28 KHLELGKKLLAAGQLADALSQFHAAVDG----DPDNYIAYYRRATVFLAMG-KSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 34444444444444 44444444442 1234455555555555555 6666666666665554 33455566666
Q ss_pred HHHHhCCChHHHHHHHHhcCCCC---c---chHHHH------------HHHHHhCCCchHHHHHHHHhHHCCCCcCHHHH
Q 008183 143 HFYSRFRSPDNAKKVFDEIRERD---V---VCYGAM------------IVGFAQNSRLVDSLSVFADMRSSDVGSTMYCV 204 (575)
Q Consensus 143 ~~~~~~g~~~~A~~~f~~m~~~~---~---~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 204 (575)
..|.+.|++++|...|+.+.+.+ . ..|..+ ...+.+.|++++|+..|+++.+.. +.+..++
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 180 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELR 180 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 66666666666666666654421 1 344443 333667777777777777776532 2355666
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHH--------
Q 008183 205 SGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAM-------- 274 (575)
Q Consensus 205 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l-------- 274 (575)
..+..++...|++++|...+..+.+.. +.+..++..+...|.+.|++++|.+.|++++. +.+...+..+
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNK 259 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 777777777777777777777776653 45567777777777777777777777776433 3334444444
Q ss_pred ----HHHHHHcCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-ChhHHHH
Q 008183 275 ----MAGYAQQGDQSTVLELFHLLEMRGFAPD-----EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEP-GLEHYTC 344 (575)
Q Consensus 275 ----i~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ 344 (575)
...|.+.|++++|+..|+++.+. .|+ ...+..+..++.+.|++++|...++.+... .| +...|..
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~ 334 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM---EPDNVNALKD 334 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcccHHHHHH
Confidence 67788888888888888888774 333 346777777888888888888888877432 34 4677888
Q ss_pred HHHHHhccCChHHHHHHHHhC-CCCCC-HHHHHHHHHH------------HHHcC-----ChHHHHHHHHH-HHhcCCCC
Q 008183 345 LISAMGRAGRLEDAERIAMAM-PFEPD-AAVWRALLSF------------SAIHG-----KADMASKMGKR-LIDINPYD 404 (575)
Q Consensus 345 li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~------------~~~~g-----~~~~a~~~~~~-~~~~~p~~ 404 (575)
+..+|...|++++|...|++. .+.|+ ...+..+..+ |...| +.+++.+.+++ .++..|++
T Consensus 335 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 335 RAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGG
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCC
Confidence 888888888888888888776 55564 5556555533 22333 56677788876 55666653
Q ss_pred ch----------hHHHHHHHHHhCCCchH
Q 008183 405 DS----------AYVIVANVLSGVGRWDE 423 (575)
Q Consensus 405 ~~----------~~~~l~~~~~~~g~~~~ 423 (575)
.. .+..+..+|...|+.+.
T Consensus 415 ~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 415 FQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred CCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 21 34445555555555443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-18 Score=183.13 Aligned_cols=389 Identities=11% Similarity=0.037 Sum_probs=271.9
Q ss_pred ccHHHHHHHHhHcCCChHHHHHHHccCC---CCChhhHHHHHHHHhcCch---HHHHHHHHhhCCCCCcCCChhhHHHHH
Q 008183 33 RSIYNNLITNYSKSNLLSYSLRLFNHIP---SPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLF 106 (575)
Q Consensus 33 ~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~---a~~~~~~m~~~~~~~~~p~~~t~~~ll 106 (575)
...+..+-..|.+.|++++|.+.|+++. +.+...|..+...|.+.|+ |++.|++..+.. +.+..++..+.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~la 100 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK----PDHSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CchHHHHHHHH
Confidence 3445555666666666666666666553 3355566666666666655 666666666532 22445555555
Q ss_pred HHHhhchhhHHHHHHHHHHHHhhCCCCchh---------------------------------HHHHHHHHHHhCCChHH
Q 008183 107 KTCASLSHAFLFGLSLHSLSLKLSLHDKPF---------------------------------CGSALVHFYSRFRSPDN 153 (575)
Q Consensus 107 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~---------------------------------~~~~li~~~~~~g~~~~ 153 (575)
..+...| +++.|...+. .+.....+... .....+..|....+.+.
T Consensus 101 ~~~~~~g-~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 101 SANESLG-NFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHHHHT-CHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHHHHcC-CHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 6666666 6666666664 22221111110 11122222333334444
Q ss_pred HHHHHHhcCCCCcc---hHHHHHHHHHhC--------CCchHHHHHHHHhHHCCCCcC--------HHHHHHHHHHHHhc
Q 008183 154 AKKVFDEIRERDVV---CYGAMIVGFAQN--------SRLVDSLSVFADMRSSDVGST--------MYCVSGALRAAAEL 214 (575)
Q Consensus 154 A~~~f~~m~~~~~~---~~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~--------~~t~~~ll~~~~~~ 214 (575)
+...+......+.. .+..+...+... |++++|+.+|+++.+. .|+ ..++..+...+...
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhc
Confidence 44333333332222 233333322222 4789999999999764 343 23466666778888
Q ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHH
Q 008183 215 AAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFH 292 (575)
Q Consensus 215 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~ 292 (575)
|++++|...+..+.+.. |+...+..+...|...|++++|.+.|++++. +.+..+|..+...|...|++++|+..|+
T Consensus 257 ~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 257 NNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQ 334 (537)
T ss_dssp TCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 99999999999999874 5588899999999999999999999998554 5567889999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC----C-
Q 008183 293 LLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM----P- 366 (575)
Q Consensus 293 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m----~- 366 (575)
+..+... .+..++..+...+...|++++|..++++.... .|+ ...+..+...|...|++++|...|+++ +
T Consensus 335 ~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 335 KAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLK---FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 9988643 24678888999999999999999999988544 344 678899999999999999999999886 1
Q ss_pred ---CCCCHHHHHHHHHHHHHc----------CChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhh
Q 008183 367 ---FEPDAAVWRALLSFSAIH----------GKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 367 ---~~p~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 433 (575)
.......+..+...+... |++++|...++++++..|.++.++..+..+|...|++++|...+++..+
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 112233455556677777 9999999999999999999999999999999999999999999999876
Q ss_pred CC
Q 008183 434 RR 435 (575)
Q Consensus 434 ~~ 435 (575)
..
T Consensus 491 ~~ 492 (537)
T 3fp2_A 491 LA 492 (537)
T ss_dssp HC
T ss_pred hC
Confidence 53
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.1e-17 Score=162.56 Aligned_cols=309 Identities=12% Similarity=0.006 Sum_probs=225.4
Q ss_pred hhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCC--C-CcchHHHHHHH
Q 008183 99 QRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE--R-DVVCYGAMIVG 175 (575)
Q Consensus 99 ~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~ 175 (575)
...+..+-..+...| +++.|...+..+++.. +.++.++..+...|...|++++|...|+.+.+ | +...|..+...
T Consensus 3 ~~~~~~~~~~~~~~g-~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAG-QLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 345566666777778 8888888888888765 44667788888888888888888888887653 3 55678888888
Q ss_pred HHhCCCchHHHHHHHHhHHCCCCc---C-HHHHHHH------------HHHHHhcccHHHHHHHHHHHHHhCCCCchhHH
Q 008183 176 FAQNSRLVDSLSVFADMRSSDVGS---T-MYCVSGA------------LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVG 239 (575)
Q Consensus 176 ~~~~g~~~~A~~~~~~m~~~g~~p---~-~~t~~~l------------l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 239 (575)
|...|++++|+..|++..+. .| + ...+..+ ...+...|++++|...+..+.+.. +.+..++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 157 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELR 157 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHH
Confidence 88888888888888888764 34 2 2333333 466777888888888888887764 5567778
Q ss_pred HHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH----------
Q 008183 240 TGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFL---------- 307 (575)
Q Consensus 240 ~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~---------- 307 (575)
..+...|.+.|++++|.+.+++++. +.+...|..+...|...|++++|...|++..+.... +..++.
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHH
Confidence 8888888888888888888887544 456777888888888888888888888888765322 222222
Q ss_pred --HHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCh-----hHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 008183 308 --AVLTALCNAGLAGESEKWIERMKVRYKLEPGL-----EHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALL 378 (575)
Q Consensus 308 --~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll 378 (575)
.+...+...|++++|...++..... .|+. ..+..+...|...|++++|.+.+++. ...| +..+|..+.
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 313 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRA 313 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 2245577788888888888877543 2432 23445667778888888888888776 3344 577788888
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 008183 379 SFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLS 416 (575)
Q Consensus 379 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 416 (575)
..+...|++++|...++++++.+|.++.++..+..++.
T Consensus 314 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 314 EAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 88888888888888888888888877777666655544
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.1e-17 Score=161.74 Aligned_cols=295 Identities=11% Similarity=0.021 Sum_probs=247.5
Q ss_pred chhHHHHHHHHHHhCCChHHHHHHHHhcCC---CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHH
Q 008183 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRE---RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRA 210 (575)
Q Consensus 134 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 210 (575)
++..+..+...+.+.|++++|...|+.+.+ .+..+|..+...+...|++++|+..|+++.+.. +.+...+..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 345677788899999999999999998754 367789999999999999999999999998753 2356788999999
Q ss_pred HHhcccHHHHHHHHHHHHHhCCC---CchhHHHHH------------HHHHHccCCHHHHHHHHhhhCC--CCChhhHHH
Q 008183 211 AAELAAMEQCRVIHGHAVVSGLD---RNVIVGTGL------------IDGYGKAGIVSDARRVFDENLS--VLNSIAWNA 273 (575)
Q Consensus 211 ~~~~~~~~~a~~~~~~~~~~g~~---~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ 273 (575)
+...|++++|...+..+.+.. + .+...+..+ ...+...|++++|.+.|++++. +.+...|..
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 159 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELREL 159 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHH
Confidence 999999999999999998763 3 345555555 5889999999999999998544 567788999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHH---------
Q 008183 274 MMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYT--------- 343 (575)
Q Consensus 274 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~--------- 343 (575)
+...|...|++++|+..|++..+.. +.+..++..+...+...|++++|...++..... .|+ ...+.
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~ 235 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLN 235 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CccchHHHHHHHHHHHHH
Confidence 9999999999999999999998863 446788999999999999999999999988543 344 33332
Q ss_pred ---HHHHHHhccCChHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 008183 344 ---CLISAMGRAGRLEDAERIAMAM-PFEPD-A----AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANV 414 (575)
Q Consensus 344 ---~li~~~~~~g~~~~A~~~~~~m-~~~p~-~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 414 (575)
.+...+.+.|++++|...+++. ...|+ . ..+..+...+...|++++|...++++++..|.++.++..+..+
T Consensus 236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 315 (359)
T 3ieg_A 236 KLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEA 315 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 2366789999999999999887 33443 3 3355677889999999999999999999999999999999999
Q ss_pred HHhCCCchHHHHHHHHHhhC
Q 008183 415 LSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 415 ~~~~g~~~~a~~~~~~m~~~ 434 (575)
|...|++++|...+++..+.
T Consensus 316 ~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 316 YLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHhc
Confidence 99999999999999998865
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.3e-17 Score=161.59 Aligned_cols=289 Identities=10% Similarity=0.006 Sum_probs=224.4
Q ss_pred CCCchhHHHHHHHHHHhCCChHHHHHHHHhcCC---CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHH
Q 008183 131 LHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE---RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGA 207 (575)
Q Consensus 131 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 207 (575)
.+.++.++..+...+...|++++|.++|+++.+ .+...+..++..+...|++++|+.+++++.+.. +.+...+..+
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 355666777778888888888888888888753 355567777788888888888888888887742 2345677777
Q ss_pred HHHHHhcc-cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCCh
Q 008183 208 LRAAAELA-AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQ 284 (575)
Q Consensus 208 l~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~ 284 (575)
...+...| ++++|...+..+.+.. +.+...+..+...|...|++++|.+.|++++. +.+...|..+...|...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhH
Confidence 78888888 8888888888887764 45577788888889999999999988887544 44567777788888899999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC-------CCCChhHHHHHHHHHhccCChHH
Q 008183 285 STVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYK-------LEPGLEHYTCLISAMGRAGRLED 357 (575)
Q Consensus 285 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-------~~p~~~~~~~li~~~~~~g~~~~ 357 (575)
++|.+.|++..+.. +.+..++..+...+...|++++|...+++...... .......+..+...|.+.|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999998888763 33567888888888899999999999887754321 12335788889999999999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHH-HhCCCch
Q 008183 358 AERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVL-SGVGRWD 422 (575)
Q Consensus 358 A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 422 (575)
|...+++. ...| +..+|..+...+...|++++|...++++++..|.++.++..+..++ ...|+.+
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 99998877 2334 5788888999999999999999999999999999988888888887 4555543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=2.1e-17 Score=162.83 Aligned_cols=348 Identities=7% Similarity=0.043 Sum_probs=165.1
Q ss_pred cCCChHHHHHHHccCCCCChhhHHHHHHHHhcCch---HHHHHHHHhhCCCCCcCCChhhHHHHHHHHhhchhhHHHHHH
Q 008183 45 KSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLS 121 (575)
Q Consensus 45 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~---a~~~~~~m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~ 121 (575)
+.|++++|.+.+++++.|+ +|..|..++.+.|+ |++.|.+ .+|..+|..++.++...| .++++..
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik---------a~D~~~y~~V~~~ae~~g-~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK---------ADDPSSYMEVVQAANTSG-NWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc---------CCCHHHHHHHHHHHHhCC-CHHHHHH
Confidence 6789999999999997664 99999999999999 9999853 257779999999999999 9999999
Q ss_pred HHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCH
Q 008183 122 LHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTM 201 (575)
Q Consensus 122 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 201 (575)
.+....+. .+++.+.+.|+.+|.++|+++++.++|+. |+..+|+.+...|...|++++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------
Confidence 88888774 45578899999999999999999988864 77789999999999999999999999988
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHc
Q 008183 202 YCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQ 281 (575)
Q Consensus 202 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~ 281 (575)
..|..+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|...... +. .+......++..|.+.
T Consensus 149 ~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~-~~ad~l~~lv~~Yek~ 220 (449)
T 1b89_A 149 SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-IV-VHADELEELINYYQDR 220 (449)
T ss_dssp TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TT-TCHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-HH-hCHhhHHHHHHHHHHC
Confidence 36999999999999999999999887 3789999999999999999999887776 43 3333344688999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhcCCCC------ChhHHHHHHHHHhccC
Q 008183 282 GDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN--AGLAGESEKWIERMKVRYKLEP------GLEHYTCLISAMGRAG 353 (575)
Q Consensus 282 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~--~g~~~~a~~~~~~m~~~~~~~p------~~~~~~~li~~~~~~g 353 (575)
|++++|+.+++...... +-....|+-+--++++ .+++.+..+.|. .+-+++| +...|..++..|..-+
T Consensus 221 G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~---~~ini~k~~~~~~~~~~w~e~~~ly~~~~ 296 (449)
T 1b89_A 221 GYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYE 296 (449)
T ss_dssp TCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999887543 3345556666555555 445555555554 4556666 5788999999999999
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHH-------------HHHHhCCC
Q 008183 354 RLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVA-------------NVLSGVGR 420 (575)
Q Consensus 354 ~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~-------------~~~~~~g~ 420 (575)
+++.|....-+-+ |+..--..+.....+..+.+.--+...-.++..| ...+.|+ ..+.+.|.
T Consensus 297 e~d~A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p---~~l~~ll~~l~~~ld~~r~v~~~~~~~~ 371 (449)
T 1b89_A 297 EYDNAIITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKP---LLLNDLLMVLSPRLDHTRAVNYFSKVKQ 371 (449)
T ss_dssp CHHHHHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCG---GGHHHHHHHHGGGCCHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCH---HHHHHHHHHHHhccCcHHHHHHHHHcCC
Confidence 9999987654432 2222222233333444444444444333333333 2333344 44445555
Q ss_pred chHHHHHHHHHhhCC
Q 008183 421 WDEVAEVRKVMKDRR 435 (575)
Q Consensus 421 ~~~a~~~~~~m~~~~ 435 (575)
+.-+...++.+++.+
T Consensus 372 l~l~~~yl~~v~~~n 386 (449)
T 1b89_A 372 LPLVKPYLRSVQNHN 386 (449)
T ss_dssp TTTTHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHhh
Confidence 555555555444443
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.77 E-value=8.6e-17 Score=160.36 Aligned_cols=279 Identities=11% Similarity=0.001 Sum_probs=225.1
Q ss_pred HhCCChHHHHH-HHHhcCC-----C--CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccH
Q 008183 146 SRFRSPDNAKK-VFDEIRE-----R--DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAM 217 (575)
Q Consensus 146 ~~~g~~~~A~~-~f~~m~~-----~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 217 (575)
.-.|++++|.. .|++... | +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 34578888888 8886543 1 45678889999999999999999999998863 34667888899999999999
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHH---------------HHHHHHH
Q 008183 218 EQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNA---------------MMAGYAQ 280 (575)
Q Consensus 218 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~---------------li~~~~~ 280 (575)
++|...+..+++.. +.+..++..+...|...|++++|.+.|++++. +.+...+.. .+..+..
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 99999999999875 56788999999999999999999999998543 223333321 2334448
Q ss_pred cCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHH
Q 008183 281 QGDQSTVLELFHLLEMRGFAP-DEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDA 358 (575)
Q Consensus 281 ~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A 358 (575)
.|++++|+..|+++.+..... +..++..+...+...|++++|...+++.... .|+ ...+..+...|.+.|++++|
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999998864322 5888999999999999999999999988543 454 78899999999999999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-----------chhHHHHHHHHHhCCCchHHH
Q 008183 359 ERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYD-----------DSAYVIVANVLSGVGRWDEVA 425 (575)
Q Consensus 359 ~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~a~ 425 (575)
...|++. ...| +..+|..+...+...|++++|...++++++..|.+ ..+|..+..+|...|++++|.
T Consensus 271 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 271 VAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 9999987 3345 58899999999999999999999999999988776 678999999999999999999
Q ss_pred HHHH
Q 008183 426 EVRK 429 (575)
Q Consensus 426 ~~~~ 429 (575)
.+++
T Consensus 351 ~~~~ 354 (368)
T 1fch_A 351 AADA 354 (368)
T ss_dssp HHHT
T ss_pred HhHH
Confidence 8876
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.4e-16 Score=153.23 Aligned_cols=265 Identities=11% Similarity=0.054 Sum_probs=228.9
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 008183 164 RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLI 243 (575)
Q Consensus 164 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 243 (575)
.+...+..+...+...|++++|+++|+++.+.. +.+...+..++..+...|++++|..++..+.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 467778889999999999999999999998753 2344566677788899999999999999999874 56788899999
Q ss_pred HHHHccC-CHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 008183 244 DGYGKAG-IVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAG 320 (575)
Q Consensus 244 ~~~~~~g-~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 320 (575)
..|...| ++++|.+.|++++. +.+...|..+...|...|++++|+..|++..+.... +...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999998654 456788999999999999999999999999887433 4566777888999999999
Q ss_pred HHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-C----------CCCCHHHHHHHHHHHHHcCChH
Q 008183 321 ESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM-P----------FEPDAAVWRALLSFSAIHGKAD 388 (575)
Q Consensus 321 ~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~----------~~p~~~~~~~ll~~~~~~g~~~ 388 (575)
+|...+++... ..|+ ...+..+...|.+.|++++|...+++. . ...+..+|..+...+...|+++
T Consensus 177 ~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 177 LAERFFSQALS---IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHH---hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 99999998843 3454 788999999999999999999999877 1 1234679999999999999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 389 MASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 389 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
+|...++++++..|.++.++..+..+|...|++++|...+++..+.
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999987653
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.7e-15 Score=157.60 Aligned_cols=399 Identities=8% Similarity=0.003 Sum_probs=288.0
Q ss_pred HHHHhhCCCcccHHHHHHHHhHcCCChHHHHHHHccCC---CCChhhHHHHHHHHhcCch---HHHHHHHHhhCCCCCcC
Q 008183 23 ARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIP---SPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFL 96 (575)
Q Consensus 23 ~~~~~~g~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~---a~~~~~~m~~~~~~~~~ 96 (575)
...++..+.+...|..++. +.+.|++++|+.+|+++. +.+...|...+..+.+.|+ |..+|++... ..
T Consensus 3 e~al~~~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~-----~~ 76 (530)
T 2ooe_A 3 EKKLEENPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLM-----KV 76 (530)
T ss_dssp HHHHHHCTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-----TC
T ss_pred hhHhhhCCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cC
Confidence 3444444467778999998 578999999999999875 3456679999999888887 9999999988 44
Q ss_pred CChhhHHHHHHHHh-hchhhHHHHH----HHHHHHHhh-CCCC-chhHHHHHHHHHHh---------CCChHHHHHHHHh
Q 008183 97 PNQRTLASLFKTCA-SLSHAFLFGL----SLHSLSLKL-SLHD-KPFCGSALVHFYSR---------FRSPDNAKKVFDE 160 (575)
Q Consensus 97 p~~~t~~~ll~~~~-~~~~~~~~a~----~~~~~~~~~-g~~~-~~~~~~~li~~~~~---------~g~~~~A~~~f~~ 160 (575)
|+...|...+.-.. ..| +.+.++ ++++..++. |..| +..+|...+....+ .|+++.|..+|+.
T Consensus 77 p~~~lw~~~~~~~~~~~~-~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~ 155 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKG-KLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQR 155 (530)
T ss_dssp CCHHHHHHHHHHHHHHTT-TSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHcc-chhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHH
Confidence 77776666664332 334 555544 477776654 5443 56788888887765 6889999999998
Q ss_pred cCC-CCc---chHHHHHHHH-------------HhCCCchHHHHHHHHhH------HCC---CCcCH--------HHHHH
Q 008183 161 IRE-RDV---VCYGAMIVGF-------------AQNSRLVDSLSVFADMR------SSD---VGSTM--------YCVSG 206 (575)
Q Consensus 161 m~~-~~~---~~~~~li~~~-------------~~~g~~~~A~~~~~~m~------~~g---~~p~~--------~t~~~ 206 (575)
..+ |+. ..|....... .+.+++.+|..++.+.. +.. +.|+. ..|..
T Consensus 156 al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~ 235 (530)
T 2ooe_A 156 GCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKK 235 (530)
T ss_dssp HTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHH
T ss_pred HHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHH
Confidence 765 322 2333222210 12355677777776632 211 34442 34444
Q ss_pred HHHHHHhc----ccH----HHHHHHHHHHHHhCCCCchhHHHHHHHHHHc-------cCCHH-------HHHHHHhhhCC
Q 008183 207 ALRAAAEL----AAM----EQCRVIHGHAVVSGLDRNVIVGTGLIDGYGK-------AGIVS-------DARRVFDENLS 264 (575)
Q Consensus 207 ll~~~~~~----~~~----~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~~~~ 264 (575)
.+...... ++. +.+..+|++.+... +.+...|..+...+.+ .|+++ +|.++|++++.
T Consensus 236 ~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~ 314 (530)
T 2ooe_A 236 YIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS 314 (530)
T ss_dssp HHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHH
Confidence 44332221 222 36677888888763 5678888888888876 79987 89999998774
Q ss_pred ---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-
Q 008183 265 ---VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPD--EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG- 338 (575)
Q Consensus 265 ---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~- 338 (575)
+.+...|..++..+.+.|++++|..+|+++.+. .|+ ...|...+..+.+.|++++|..+|++... ..|+
T Consensus 315 ~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~---~~~~~ 389 (530)
T 2ooe_A 315 TLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---DARTR 389 (530)
T ss_dssp TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---CTTCC
T ss_pred HhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh---ccCCc
Confidence 346788999999999999999999999999984 454 25788888888889999999999998843 2343
Q ss_pred hhHHHHHHHH-HhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCch----hHHHH
Q 008183 339 LEHYTCLISA-MGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDS----AYVIV 411 (575)
Q Consensus 339 ~~~~~~li~~-~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~l 411 (575)
...|...... +...|+.++|..+|++. ...| +...|..++..+...|+.++|..+++++++..|.++. .|...
T Consensus 390 ~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~ 469 (530)
T 2ooe_A 390 HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARF 469 (530)
T ss_dssp THHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 3333332222 34689999999999976 3345 5889999999999999999999999999998766554 78888
Q ss_pred HHHHHhCCCchHHHHHHHHHhhC
Q 008183 412 ANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 412 ~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
+......|+.+.+.++.+++.+.
T Consensus 470 ~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 470 LAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 88899999999999999988754
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.7e-16 Score=166.89 Aligned_cols=360 Identities=8% Similarity=-0.011 Sum_probs=275.2
Q ss_pred hhhHHHHHHHHhcCch---HHHHHHHHhhCCCCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHH
Q 008183 64 IVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSA 140 (575)
Q Consensus 64 ~~~~~~li~~~~~~g~---a~~~~~~m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 140 (575)
...|..+-..+.+.|+ |+..|+++.+.. +.+...+..+..++...| +++.|.+.+..+++.. +.+..++..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~-p~~~~~~~~ 98 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD----PNEPVFYSNISACYISTG-DLEKVIEFTTKALEIK-PDHSKALLR 98 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC----TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC----CCCcHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcC-CchHHHHHH
Confidence 3456777777888888 999999999853 446778888888899999 9999999999999986 557788999
Q ss_pred HHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHC------CCCcCHHHHHH--------
Q 008183 141 LVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS------DVGSTMYCVSG-------- 206 (575)
Q Consensus 141 li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~t~~~-------- 206 (575)
+...|.+.|++++|...|+.+. .+....+..+..+...+...+|++.++++... ...|+...+..
T Consensus 99 la~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 99 RASANESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 9999999999999999997543 23333333445555666677888888887542 12233322221
Q ss_pred ------------------HHHHHH------------hcccHHHHHHHHHHHHHhCCCCc-------hhHHHHHHHHHHcc
Q 008183 207 ------------------ALRAAA------------ELAAMEQCRVIHGHAVVSGLDRN-------VIVGTGLIDGYGKA 249 (575)
Q Consensus 207 ------------------ll~~~~------------~~~~~~~a~~~~~~~~~~g~~~~-------~~~~~~li~~~~~~ 249 (575)
+..++. ..+++++|..+++.+.+.. +.+ ..++..+...+...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhc
Confidence 111111 1257888999999888753 222 23567777889999
Q ss_pred CCHHHHHHHHhhhCC-CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008183 250 GIVSDARRVFDENLS-VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIER 328 (575)
Q Consensus 250 g~~~~A~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 328 (575)
|++++|.+.|+.++. .|+...|..+...|...|++++|+..|++..+.. +.+..++..+...+...|++++|...+++
T Consensus 257 ~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 335 (537)
T 3fp2_A 257 NNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQK 335 (537)
T ss_dssp TCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 999999999998554 5667889999999999999999999999998864 33678899999999999999999999998
Q ss_pred HHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCc
Q 008183 329 MKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDD 405 (575)
Q Consensus 329 m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 405 (575)
.... .|+ ...+..+...|...|++++|...+++. ...| +...|..+...+...|++++|...++++++..|.+.
T Consensus 336 a~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 412 (537)
T 3fp2_A 336 AQSL---NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE 412 (537)
T ss_dssp HHHH---CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch
Confidence 8543 344 678999999999999999999999887 3334 477899999999999999999999999998776554
Q ss_pred hh------HHHHHHHHHhC----------CCchHHHHHHHHHhhCC
Q 008183 406 SA------YVIVANVLSGV----------GRWDEVAEVRKVMKDRR 435 (575)
Q Consensus 406 ~~------~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~ 435 (575)
.. +..+..+|... |++++|...+++..+..
T Consensus 413 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 458 (537)
T 3fp2_A 413 KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD 458 (537)
T ss_dssp SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC
Confidence 43 34456778887 99999999999988653
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.74 E-value=5.5e-18 Score=166.93 Aligned_cols=250 Identities=11% Similarity=0.077 Sum_probs=116.9
Q ss_pred hCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHH
Q 008183 147 RFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGH 226 (575)
Q Consensus 147 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 226 (575)
+.|++++|.++++++..|+ +|..|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|..++..
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 7789999999999996654 9999999999999999999999753 6788999999999999999999998887
Q ss_pred HHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH
Q 008183 227 AVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSF 306 (575)
Q Consensus 227 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 306 (575)
..+. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|...|..+ ..|
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~----pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING----PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp ------------------------CHHHHTTTTTC----C----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 7774 55688899999999999999998888764 67789999999999999999999999977 378
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 008183 307 LAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGK 386 (575)
Q Consensus 307 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~ 386 (575)
..+..++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+...|+. ...++..|.+.|.
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~--l~~lv~~Yek~G~ 222 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE--LEELINYYQDRGY 222 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHH--HHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhh--HHHHHHHHHHCCC
Confidence 89999999999999999999866 37899999999999999999997776665544543 4468899999999
Q ss_pred hHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHH
Q 008183 387 ADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRK 429 (575)
Q Consensus 387 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 429 (575)
+++|..+++..+.+++.....|..|.-+|++- +.++..+.++
T Consensus 223 ~eEai~lLe~aL~le~ah~~~ftel~il~~ky-~p~k~~ehl~ 264 (449)
T 1b89_A 223 FEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLE 264 (449)
T ss_dssp HHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 99999999999999998889999999888877 3344444433
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-16 Score=158.48 Aligned_cols=261 Identities=11% Similarity=-0.068 Sum_probs=213.0
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 008183 165 DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLID 244 (575)
Q Consensus 165 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 244 (575)
+...|..+...+.+.|++++|++.|+++.+.. +.+..++..+...+...|++++|...+..+++.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 55678899999999999999999999998753 3467788999999999999999999999998875 556888999999
Q ss_pred HHHccCCHHHHHHHHhhhCC-CC-C----------hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHH
Q 008183 245 GYGKAGIVSDARRVFDENLS-VL-N----------SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFA-PDEYSFLAVLT 311 (575)
Q Consensus 245 ~~~~~g~~~~A~~~~~~~~~-~~-~----------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~ 311 (575)
.|.+.|++++|.+.|++++. .| + ...+..+...|...|++++|+..|+++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 99999999999999998544 11 1 223344578899999999999999999886432 26888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChH
Q 008183 312 ALCNAGLAGESEKWIERMKVRYKLEP-GLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKAD 388 (575)
Q Consensus 312 a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~ 388 (575)
.+...|++++|...+++.... .| +..+|..+...|.+.|++++|...|++. ...| +..+|..+...|...|+++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV---RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 999999999999999988543 34 4789999999999999999999999987 3455 4889999999999999999
Q ss_pred HHHHHHHHHHhcCCC------------CchhHHHHHHHHHhCCCchHHHHHHHH
Q 008183 389 MASKMGKRLIDINPY------------DDSAYVIVANVLSGVGRWDEVAEVRKV 430 (575)
Q Consensus 389 ~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 430 (575)
+|...++++++..|. +..+|..|..++...|+.+.+.++.++
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999987765 356889999999999999988877653
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.72 E-value=5e-15 Score=142.31 Aligned_cols=267 Identities=10% Similarity=-0.027 Sum_probs=212.4
Q ss_pred HHhCCChHHHHHHHHhcCCCCc----chHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHH
Q 008183 145 YSRFRSPDNAKKVFDEIRERDV----VCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQC 220 (575)
Q Consensus 145 ~~~~g~~~~A~~~f~~m~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 220 (575)
....|++..|...++.....+. ...-.+.++|...|++++|+..++.. -.|+..++..+...+...++.++|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHH
Confidence 4467999999999988765432 34456788999999999999866542 356777888888899999999999
Q ss_pred HHHHHHHHHhCCCC-chhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 008183 221 RVIHGHAVVSGLDR-NVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGF 299 (575)
Q Consensus 221 ~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 299 (575)
.+.++.++..+..| +...+..+...|...|++++|.+.+++ +.+...+..++..|.+.|++++|.+.|+++.+..
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~---~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~- 160 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ---GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD- 160 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT---CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-
Confidence 99999998877544 566777788999999999999999998 5678889999999999999999999999998864
Q ss_pred CCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHH
Q 008183 300 APDEYSF---LAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVW 374 (575)
Q Consensus 300 ~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~ 374 (575)
|+.... ...+..+...|++++|..+|+++... .+.+...++.+...+.+.|++++|...|++. ...| +..+|
T Consensus 161 -p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l 237 (291)
T 3mkr_A 161 -EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL 237 (291)
T ss_dssp -TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred -cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 553211 12333344568999999999999655 2446888999999999999999999999986 4456 58899
Q ss_pred HHHHHHHHHcCChHH-HHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHH
Q 008183 375 RALLSFSAIHGKADM-ASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAE 426 (575)
Q Consensus 375 ~~ll~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 426 (575)
..++..+...|+.++ +.++++++.+.+|.++.+ .+...+.+.++++..
T Consensus 238 ~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~----~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 238 INLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI----KEYRAKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHH
Confidence 999999999999876 578999999999998754 344555555555443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=5.7e-18 Score=179.48 Aligned_cols=163 Identities=13% Similarity=0.126 Sum_probs=133.0
Q ss_pred CCCchhHHHHHHHHHHhCCChHHHHHHHHhcC-------CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHH
Q 008183 131 LHDKPFCGSALVHFYSRFRSPDNAKKVFDEIR-------ERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYC 203 (575)
Q Consensus 131 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 203 (575)
...-..+||+||++|+++|++++|.++|++|. .||++|||+||.+|++.|++++|.++|++|.+.|+.||..|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 34445789999999999999999999998764 48999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccc-HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCC-----CChhhHHHHHHH
Q 008183 204 VSGALRAAAELAA-MEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSV-----LNSIAWNAMMAG 277 (575)
Q Consensus 204 ~~~ll~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~li~~ 277 (575)
|+++|.++++.|. .+.|.+++++|.+.|+.||..+|++++..+.+.+-++...+++.+ +.. +.+.+.+.|...
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~-f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPT-FSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCC-CCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcc-cCCCCCCcccccchHHHHHH
Confidence 9999999999997 478999999999999999999999999988887666665555444 331 223444556666
Q ss_pred HHHcCC---------hHHHHHHHHHH
Q 008183 278 YAQQGD---------QSTVLELFHLL 294 (575)
Q Consensus 278 ~~~~g~---------~~~A~~l~~~m 294 (575)
|.+.+. .++-.++|++-
T Consensus 282 ~s~d~~~s~pk~~~~~~~L~~~~~~Q 307 (1134)
T 3spa_A 282 YAKDGRVSYPKLHLPLKTLQCLFEKQ 307 (1134)
T ss_dssp HCCCSCCCCCCCSSCHHHHHHHHHHH
T ss_pred HccCCCCcCccccCCHHHHHHHHHHH
Confidence 666552 35555666543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.71 E-value=5.5e-14 Score=146.04 Aligned_cols=363 Identities=10% Similarity=-0.029 Sum_probs=270.5
Q ss_pred CcccHHHHHHHHhHc----CCChHHHHHHHccCC-CCChhhHHHHHHHHhc----Cch---HHHHHHHHhhCCCCCcCCC
Q 008183 31 ADRSIYNNLITNYSK----SNLLSYSLRLFNHIP-SPNIVSWTALISAHSN----SPL---SLNIFLSMLRHPTLSFLPN 98 (575)
Q Consensus 31 ~~~~~~~~li~~~~~----~g~~~~A~~~f~~m~-~~~~~~~~~li~~~~~----~g~---a~~~~~~m~~~~~~~~~p~ 98 (575)
.++..+..|-..|.. .+++++|...|++.. ..+...+..|-..|.. .++ |++.|++..+.+ +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~------~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG------L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC------C
Confidence 356667777777777 789999999988654 3456667777666665 455 888888887755 4
Q ss_pred hhhHHHHHHHHhh----chhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHh----CCChHHHHHHHHhcCC-CCcchH
Q 008183 99 QRTLASLFKTCAS----LSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSR----FRSPDNAKKVFDEIRE-RDVVCY 169 (575)
Q Consensus 99 ~~t~~~ll~~~~~----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~f~~m~~-~~~~~~ 169 (575)
...+..+-..+.. .+ +.+.|...+....+.| ++..+..|-.+|.. .++.++|.+.|++..+ .+..++
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~-~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~ 186 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKV-DKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSC 186 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 4555555556655 56 8888999988888876 45667777788877 7788999998887654 466778
Q ss_pred HHHHHHHHh----CCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHh----cccHHHHHHHHHHHHHhCCCCchhHHHH
Q 008183 170 GAMIVGFAQ----NSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAE----LAAMEQCRVIHGHAVVSGLDRNVIVGTG 241 (575)
Q Consensus 170 ~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 241 (575)
..+...|.+ .+++++|++.|++..+.| +...+..+...+.. .++.++|...+....+.| +...+..
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 260 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFR 260 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 888888887 788999999998887754 45566666666665 778889998888888765 4556677
Q ss_pred HHHHHHc----cCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008183 242 LIDGYGK----AGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQ-----GDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312 (575)
Q Consensus 242 li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 312 (575)
|..+|.. .++.++|.+.|+.+....+...+..+...|... +++++|+..|++..+.| +...+..+...
T Consensus 261 lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 337 (490)
T 2xm6_A 261 LGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAI 337 (490)
T ss_dssp HHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHH
Confidence 7777777 788999999998866666777888888888877 88999999998888765 44566666666
Q ss_pred HHhcC---CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhc----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHH--
Q 008183 313 LCNAG---LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGR----AGRLEDAERIAMAMPFEPDAAVWRALLSFSAI-- 383 (575)
Q Consensus 313 ~~~~g---~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~-- 383 (575)
+...| +.++|.++|++.... .+...+..|...|.. .+++++|.++|++.--..+...+..|...|..
T Consensus 338 y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~ 413 (490)
T 2xm6_A 338 YFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGL 413 (490)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred HHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCC
Confidence 66655 778888888877432 356777788888877 78899999888887323467778888888887
Q ss_pred --cCChHHHHHHHHHHHhcCCC---CchhHHHHHHHHH
Q 008183 384 --HGKADMASKMGKRLIDINPY---DDSAYVIVANVLS 416 (575)
Q Consensus 384 --~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~ 416 (575)
.++.++|...++++.+.+|. ++.+...|..++.
T Consensus 414 g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~ 451 (490)
T 2xm6_A 414 GVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTA 451 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCH
Confidence 78899999999998888843 5555554444433
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.71 E-value=5.6e-16 Score=154.46 Aligned_cols=277 Identities=13% Similarity=0.004 Sum_probs=204.0
Q ss_pred CChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHH-HHHHhHHCCC-Cc--CHHHHHHHHHHHHhcccHHHHHHHH
Q 008183 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLS-VFADMRSSDV-GS--TMYCVSGALRAAAELAAMEQCRVIH 224 (575)
Q Consensus 149 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~m~~~g~-~p--~~~t~~~ll~~~~~~~~~~~a~~~~ 224 (575)
+.++.+...|+.+...+.. ++...|++++|++ .|++...... .| +...+..+...+...|++++|...+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 87 (368)
T 1fch_A 15 DFWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLF 87 (368)
T ss_dssp --------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3444555555555443322 2344588999998 8887654321 11 3456778889999999999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 008183 225 GHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPD 302 (575)
Q Consensus 225 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 302 (575)
..+++.. +.+..++..+...|.+.|++++|.+.|++++. +.+..+|..+...|...|++++|++.|+++.......
T Consensus 88 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~- 165 (368)
T 1fch_A 88 EAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAY- 165 (368)
T ss_dssp HHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT-
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-
Confidence 9999875 66788999999999999999999999998554 5678899999999999999999999999998864321
Q ss_pred HHHHHH---------------HHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-C
Q 008183 303 EYSFLA---------------VLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-P 366 (575)
Q Consensus 303 ~~t~~~---------------ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 366 (575)
...+.. .+..+...|++++|..+++++.....-.++..++..+...|.+.|++++|...|++. .
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 245 (368)
T 1fch_A 166 AHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS 245 (368)
T ss_dssp GGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 111111 234444889999999999998654322224788999999999999999999999987 3
Q ss_pred CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 367 FEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 367 ~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
..| +..+|..+...+...|++++|...++++++..|.++.++..++.+|.+.|++++|...+++..+.
T Consensus 246 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 246 VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 345 58899999999999999999999999999999999999999999999999999999999988764
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.2e-13 Score=141.46 Aligned_cols=351 Identities=11% Similarity=-0.024 Sum_probs=290.5
Q ss_pred CCChhhHHHHHHHHhc----Cch---HHHHHHHHhhCCCCCcCCChhhHHHHHHHHhh----chhhHHHHHHHHHHHHhh
Q 008183 61 SPNIVSWTALISAHSN----SPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCAS----LSHAFLFGLSLHSLSLKL 129 (575)
Q Consensus 61 ~~~~~~~~~li~~~~~----~g~---a~~~~~~m~~~~~~~~~p~~~t~~~ll~~~~~----~~~~~~~a~~~~~~~~~~ 129 (575)
..+..++..+-..|.. .++ |+..|++..+.+ +...+..+-..+.. .+ +.+.|...+....+.
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~------~~~a~~~Lg~~y~~g~g~~~-~~~~A~~~~~~a~~~ 108 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG------YTPAEYVLGLRYMNGEGVPQ-DYAQAVIWYKKAALK 108 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHC
Confidence 4466666666666665 455 999999998765 45566666666766 77 999999999999887
Q ss_pred CCCCchhHHHHHHHHHHh----CCChHHHHHHHHhcCCC-CcchHHHHHHHHHh----CCCchHHHHHHHHhHHCCCCcC
Q 008183 130 SLHDKPFCGSALVHFYSR----FRSPDNAKKVFDEIRER-DVVCYGAMIVGFAQ----NSRLVDSLSVFADMRSSDVGST 200 (575)
Q Consensus 130 g~~~~~~~~~~li~~~~~----~g~~~~A~~~f~~m~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~ 200 (575)
| ++..+..|-.+|.. .+++++|...|+...+. +..++..|...|.. .+++++|++.|++..+.| +
T Consensus 109 ~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~ 182 (490)
T 2xm6_A 109 G---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---N 182 (490)
T ss_dssp T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 6 56777788889988 88999999999987654 66788888888887 889999999999998864 6
Q ss_pred HHHHHHHHHHHHh----cccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHc----cCCHHHHHHHHhhhCCCCChhhHH
Q 008183 201 MYCVSGALRAAAE----LAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGK----AGIVSDARRVFDENLSVLNSIAWN 272 (575)
Q Consensus 201 ~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~ 272 (575)
...+..+...+.. .++.++|...+....+.| +...+..+..+|.. .+++++|.+.|++.....+...+.
T Consensus 183 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~ 259 (490)
T 2xm6_A 183 VWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQF 259 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 6777788888877 899999999999999876 56778888888886 889999999999977777888888
Q ss_pred HHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHhcCCCCChhHHH
Q 008183 273 AMMAGYAQ----QGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA-----GLAGESEKWIERMKVRYKLEPGLEHYT 343 (575)
Q Consensus 273 ~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~m~~~~~~~p~~~~~~ 343 (575)
.+...|.. .+++++|+..|++..+.| +...+..+...+... ++.++|..++++.. +. .+...+.
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~-~~---~~~~a~~ 332 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSA-EQ---GDATAQA 332 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHH-HT---TCHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHH-hc---CCHHHHH
Confidence 88888888 899999999999998765 455666777777776 89999999999884 32 2456777
Q ss_pred HHHHHHhccC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 008183 344 CLISAMGRAG---RLEDAERIAMAMPFEPDAAVWRALLSFSAI----HGKADMASKMGKRLIDINPYDDSAYVIVANVLS 416 (575)
Q Consensus 344 ~li~~~~~~g---~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 416 (575)
.|...|.+.| ++++|.++|++.-...++..+..|...|.. .+++++|...+++..+.+ ++.++..|..+|.
T Consensus 333 ~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~ 410 (490)
T 2xm6_A 333 NLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYY 410 (490)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHH
Confidence 8888887766 789999999887323578899999999998 899999999999998875 5678899999999
Q ss_pred h----CCCchHHHHHHHHHhhCCC
Q 008183 417 G----VGRWDEVAEVRKVMKDRRV 436 (575)
Q Consensus 417 ~----~g~~~~a~~~~~~m~~~~~ 436 (575)
. .+++++|...|++..+.+.
T Consensus 411 ~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 411 YGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCCHHHHHHHHHHHHHCCC
Confidence 8 8999999999999988764
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-17 Score=176.77 Aligned_cols=132 Identities=20% Similarity=0.245 Sum_probs=105.5
Q ss_pred CCchhHHHHHHHHHHccCCHHHHHHHHhhhC------CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH
Q 008183 233 DRNVIVGTGLIDGYGKAGIVSDARRVFDENL------SVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSF 306 (575)
Q Consensus 233 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 306 (575)
..-..+||+||++||++|++++|.++|++|- ..||++|||+||.+|++.|++++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3345688899999999999999998886621 2688899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC
Q 008183 307 LAVLTALCNAGL-AGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM 365 (575)
Q Consensus 307 ~~ll~a~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (575)
+++|.++++.|+ .++|.++|++| .+.|+.||..+|++++....+.+-++.+.++...+
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM-~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQM-SQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHH-HHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHH-HHcCCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 999998888887 47888889988 55688999999998887777765555554443333
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.70 E-value=2.5e-15 Score=146.82 Aligned_cols=260 Identities=12% Similarity=-0.017 Sum_probs=192.6
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 008183 166 VVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDG 245 (575)
Q Consensus 166 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 245 (575)
...|..+...+...|++++|+.+|+++.+.. +.+...+..+..++...|++++|...+..+.+.. +.+..++..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 3445556666666677777777776665532 2245556666666666777777777777666653 4456666777777
Q ss_pred HHccCCHHHHHHHHhhhCC--CCChhhHHHH--------------HH-HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 008183 246 YGKAGIVSDARRVFDENLS--VLNSIAWNAM--------------MA-GYAQQGDQSTVLELFHLLEMRGFAPDEYSFLA 308 (575)
Q Consensus 246 ~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l--------------i~-~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 308 (575)
|...|++++|.+.|++++. +.+...+..+ .. .+...|++++|...++++.+.. +.+..++..
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 177 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHAS 177 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 7777777777777766332 2222333332 22 3677888999999999988764 336788888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC
Q 008183 309 VLTALCNAGLAGESEKWIERMKVRYKLEP-GLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHG 385 (575)
Q Consensus 309 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g 385 (575)
+...+...|++++|..++++.... .| +...+..+...|...|++++|...|++. ...| +..+|..+...+...|
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVEL---RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 899999999999999999988543 34 4778899999999999999999999887 3344 5888999999999999
Q ss_pred ChHHHHHHHHHHHhcCCC------------CchhHHHHHHHHHhCCCchHHHHHHHHH
Q 008183 386 KADMASKMGKRLIDINPY------------DDSAYVIVANVLSGVGRWDEVAEVRKVM 431 (575)
Q Consensus 386 ~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m 431 (575)
++++|...++++++..|. +..++..+..+|...|++++|..++++.
T Consensus 255 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp CHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred cHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999999998888 6778999999999999999999987643
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.5e-15 Score=147.24 Aligned_cols=226 Identities=11% Similarity=0.007 Sum_probs=142.6
Q ss_pred ChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCC---CCcchHHHHHH
Q 008183 98 NQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE---RDVVCYGAMIV 174 (575)
Q Consensus 98 ~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~ 174 (575)
+...+......+.+.| +++.|...++.+++.. +.+..++..+...|.+.|++++|...|+++.+ .+..+|..+..
T Consensus 64 ~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEG-DLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHT-CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCC-CHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 4455777788888888 8899999998888875 45677888888888888888888888887653 35678888888
Q ss_pred HHHhCCCchHHHHHHHHhHHCCCCcCHH-----------HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC--chhHHHH
Q 008183 175 GFAQNSRLVDSLSVFADMRSSDVGSTMY-----------CVSGALRAAAELAAMEQCRVIHGHAVVSGLDR--NVIVGTG 241 (575)
Q Consensus 175 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~-----------t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~ 241 (575)
.|.+.|++++|+..|+++.+. .|+.. .+..+...+...|++++|...+..+++.. +. +..++..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~ 218 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTG 218 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHH
Confidence 888888888888888888763 23321 12223455556666666666666666553 22 4555566
Q ss_pred HHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 008183 242 LIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319 (575)
Q Consensus 242 li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 319 (575)
+...|.+.|++++|.+.|++++. +.+..+|+.+...|.+.|++++|+..|++..+.. +.+..++..+..++...|++
T Consensus 219 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 219 LGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 66666666666666666655332 3344555555555555666666665555555432 12344555555555555555
Q ss_pred HHHHHHHHHH
Q 008183 320 GESEKWIERM 329 (575)
Q Consensus 320 ~~a~~~~~~m 329 (575)
++|...|++.
T Consensus 298 ~~A~~~~~~a 307 (365)
T 4eqf_A 298 REAVSNFLTA 307 (365)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555544
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.68 E-value=6.2e-15 Score=141.69 Aligned_cols=248 Identities=10% Similarity=0.026 Sum_probs=203.2
Q ss_pred HHHHHhCCCchHHHHHHHHhHHCCCCcCH--HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccC
Q 008183 173 IVGFAQNSRLVDSLSVFADMRSSDVGSTM--YCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250 (575)
Q Consensus 173 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 250 (575)
|+-....|++..|+..++.... ..|+. .....+.+++...|+++.|...++. .-+|+...+..+...|...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 4456678999999999988644 34554 3556678999999999999875543 23667888899999999999
Q ss_pred CHHHHHHHHhhhCC---CC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008183 251 IVSDARRVFDENLS---VL-NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326 (575)
Q Consensus 251 ~~~~A~~~~~~~~~---~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 326 (575)
+.++|.+.+++++. .| +...+..+...|.+.|++++|++.|++ +.+...+..+...+.+.|++++|...+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999998543 24 556677778899999999999999987 467788989999999999999999999
Q ss_pred HHHHHhcCCCCChhH---HHHHHHHHhccCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 008183 327 ERMKVRYKLEPGLEH---YTCLISAMGRAGRLEDAERIAMAM-P-FEPDAAVWRALLSFSAIHGKADMASKMGKRLIDIN 401 (575)
Q Consensus 327 ~~m~~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 401 (575)
+.+... .|+... ..+++..+...|++++|..+|+++ . ...+...|+.+..++...|++++|+..++++++.+
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999544 466422 223445555679999999999998 2 23468999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhCCCchH-HHHHHHHHhhCC
Q 008183 402 PYDDSAYVIVANVLSGVGRWDE-VAEVRKVMKDRR 435 (575)
Q Consensus 402 p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~~ 435 (575)
|.++.++..++..+...|+.++ +.++++++.+..
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999976 578988887643
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.65 E-value=3.2e-14 Score=138.85 Aligned_cols=225 Identities=11% Similarity=0.020 Sum_probs=125.1
Q ss_pred hhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCC---CCcchHHHHHHH
Q 008183 99 QRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE---RDVVCYGAMIVG 175 (575)
Q Consensus 99 ~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~ 175 (575)
...+......+...| +++.|..+++.+++.. +.+..++..+...|.+.|++++|...|+++.+ .+..+|..+...
T Consensus 21 ~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLA-NLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTT-CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 344555566666677 7777777777777654 34556666777777777777777777776543 245567777777
Q ss_pred HHhCCCchHHHHHHHHhHHCCCCcCHH-HHHHH--------------HH-HHHhcccHHHHHHHHHHHHHhCCCCchhHH
Q 008183 176 FAQNSRLVDSLSVFADMRSSDVGSTMY-CVSGA--------------LR-AAAELAAMEQCRVIHGHAVVSGLDRNVIVG 239 (575)
Q Consensus 176 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~l--------------l~-~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 239 (575)
|...|++++|++.|+++.... |+.. .+..+ .. .+...|++++|...+..+.+.. +.+..++
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 175 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLH 175 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHH
Confidence 777777777777777776542 2221 11111 11 1444555555555555555543 3344555
Q ss_pred HHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 008183 240 TGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317 (575)
Q Consensus 240 ~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 317 (575)
..+...|.+.|++++|.+.|++++. +.+..+|..+...|...|++++|...|++..+.. +.+..++..+...+...|
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhc
Confidence 5555555555555555555554322 2334445555555555555555555555554432 123444444555555555
Q ss_pred CHHHHHHHHHHH
Q 008183 318 LAGESEKWIERM 329 (575)
Q Consensus 318 ~~~~a~~~~~~m 329 (575)
++++|...+++.
T Consensus 255 ~~~~A~~~~~~a 266 (327)
T 3cv0_A 255 QYDLAAKQLVRA 266 (327)
T ss_dssp CHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 555555555444
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.65 E-value=7.2e-13 Score=145.16 Aligned_cols=350 Identities=10% Similarity=0.054 Sum_probs=276.6
Q ss_pred HHHHHHHHHhhCC---CcccHHHHHHHHhHcCCChHHHHHHHccCC-CC-----ChhhHHHHHHHHhcCch--HHHHHHH
Q 008183 18 PRIVHARALKSSQ---ADRSIYNNLITNYSKSNLLSYSLRLFNHIP-SP-----NIVSWTALISAHSNSPL--SLNIFLS 86 (575)
Q Consensus 18 ~~~~~~~~~~~g~---~~~~~~~~li~~~~~~g~~~~A~~~f~~m~-~~-----~~~~~~~li~~~~~~g~--a~~~~~~ 86 (575)
=+++.++.....+ .++.--...++.|...|.+.+|.++++++. .| +...-|.++.+..+... ..+...+
T Consensus 967 RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~k 1046 (1630)
T 1xi4_A 967 RRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINR 1046 (1630)
T ss_pred HHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHH
Confidence 3456666555554 455556777999999999999999999885 33 33556777777666533 5555555
Q ss_pred HhhCCCCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCCCCc
Q 008183 87 MLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDV 166 (575)
Q Consensus 87 m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~ 166 (575)
... ....-+-..|...| .+++|..+++... ......+.++ -..|++++|.++.++.. +.
T Consensus 1047 Ld~----------~d~~eIA~Iai~lg-lyEEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aervn--~p 1105 (1630)
T 1xi4_A 1047 LDN----------YDAPDIANIAISNE-LFEEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERCN--EP 1105 (1630)
T ss_pred hhh----------ccHHHHHHHHHhCC-CHHHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhcC--CH
Confidence 442 11333666777888 9999999999852 1122223333 37889999999998774 56
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 008183 167 VCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGY 246 (575)
Q Consensus 167 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 246 (575)
.+|..+..++.+.|++++|++.|.+. -|...|..++.+|.+.|+++++.+++....+.. +++.+.+.++.+|
T Consensus 1106 ~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaY 1177 (1630)
T 1xi4_A 1106 AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFAL 1177 (1630)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHH
Confidence 78999999999999999999999664 567788899999999999999999999888764 5555566799999
Q ss_pred HccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008183 247 GKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326 (575)
Q Consensus 247 ~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 326 (575)
++.+++++.... +..++...|..+...|...|++++|..+|... ..|..+...+.+.|+++.|.+.+
T Consensus 1178 AKl~rleele~f----I~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaa 1244 (1630)
T 1xi4_A 1178 AKTNRLAELEEF----INGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGA 1244 (1630)
T ss_pred HhhcCHHHHHHH----HhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999964444 34567778888999999999999999999984 48999999999999999999998
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCch
Q 008183 327 ERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDS 406 (575)
Q Consensus 327 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 406 (575)
++. .+..+|..+..+|...|++..|...... +..++..+..++.-|...|.+++|..+++..+.++|.+..
T Consensus 1245 rKA-------~n~~aWkev~~acve~~Ef~LA~~cgl~--Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~g 1315 (1630)
T 1xi4_A 1245 RKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLH--IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMG 1315 (1630)
T ss_pred HHh-------CCHHHHHHHHHHHhhhhHHHHHHHHHHh--hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhH
Confidence 855 4568899999999999999999988765 3455666778999999999999999999999999988888
Q ss_pred hHHHHHHHHHhC
Q 008183 407 AYVIVANVLSGV 418 (575)
Q Consensus 407 ~~~~l~~~~~~~ 418 (575)
.|.-|..+|++.
T Consensus 1316 mftELaiLyaKy 1327 (1630)
T 1xi4_A 1316 MFTELAILYSKF 1327 (1630)
T ss_pred HHHHHHHHHHhC
Confidence 898888888775
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.5e-13 Score=141.98 Aligned_cols=373 Identities=9% Similarity=-0.060 Sum_probs=209.0
Q ss_pred ccHHHHHHHHhHcCCChHHHHHHHccCCCCChhhHHHHHHHHhcCchHHHHHHHHhhCCCCCcCC-ChhhHHHHHHHHhh
Q 008183 33 RSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLP-NQRTLASLFKTCAS 111 (575)
Q Consensus 33 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~a~~~~~~m~~~~~~~~~p-~~~t~~~ll~~~~~ 111 (575)
...||.|-..|...|+.++|.+.|++. ++++....... ..| ...+|+.+-..+..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kA---------------------l~~~~~~~~~~---~~~~~~~~~~nla~~y~~ 106 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKA---------------------EELIQQEHADQ---AEIRSLVTWGNYAWVYYH 106 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHH---------------------HHHHHHHSGGG---CTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHH---------------------HHHHHhcCccc---cchHHHHHHHHHHHHHHH
Confidence 445666666666666666666665442 22222221111 122 33466666666667
Q ss_pred chhhHHHHHHHHHHHHhhC------C-CCchhHHHHHHHHHHh--CCChHHHHHHHHhcCC--C-CcchHHHHHHH---H
Q 008183 112 LSHAFLFGLSLHSLSLKLS------L-HDKPFCGSALVHFYSR--FRSPDNAKKVFDEIRE--R-DVVCYGAMIVG---F 176 (575)
Q Consensus 112 ~~~~~~~a~~~~~~~~~~g------~-~~~~~~~~~li~~~~~--~g~~~~A~~~f~~m~~--~-~~~~~~~li~~---~ 176 (575)
.| +++.|...++.+.+.. . .....+++.+..++.+ .+++++|...|++..+ | +...+..+... +
T Consensus 107 ~g-~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l 185 (472)
T 4g1t_A 107 MG-RLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRL 185 (472)
T ss_dssp TT-CHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred cC-ChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 77 7777776666665431 0 1122344444333433 3457777777776543 3 33344443333 3
Q ss_pred HhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHh----cccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCH
Q 008183 177 AQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAE----LAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252 (575)
Q Consensus 177 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 252 (575)
...++.++|++.|++..+.. +.+..++..+...+.. .++.++|.+.++...... +.+..++..+...|.+.|++
T Consensus 186 ~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 263 (472)
T 4g1t_A 186 DNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEP 263 (472)
T ss_dssp HHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCH
T ss_pred cCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCch
Confidence 44566777777777766532 2233444444444433 356667777777776664 45566777777788888888
Q ss_pred HHHHHHHhhhCC--CCChhhHHHHHHHHHH-------------------cCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008183 253 SDARRVFDENLS--VLNSIAWNAMMAGYAQ-------------------QGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311 (575)
Q Consensus 253 ~~A~~~~~~~~~--~~~~~~~~~li~~~~~-------------------~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 311 (575)
++|.+.|++++. +.+..+|..+...|.. .+..++|...|++..+.. +.+..++..+..
T Consensus 264 ~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~ 342 (472)
T 4g1t_A 264 DKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILAS 342 (472)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHH
Confidence 888887776443 3445556655555432 223567777787776653 224456677888
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCCCChh----HHHHHHH-HHhccCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcC
Q 008183 312 ALCNAGLAGESEKWIERMKVRYKLEPGLE----HYTCLIS-AMGRAGRLEDAERIAMAM-PFEPDAAVWRALLSFSAIHG 385 (575)
Q Consensus 312 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~----~~~~li~-~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g 385 (575)
.+...|++++|...|++... +.|+.. .+..+.. .+...|+.++|...|++. .+.|+...+...
T Consensus 343 ~~~~~~~~~~A~~~~~kaL~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~-------- 411 (472)
T 4g1t_A 343 LHALADQYEEAEYYFQKEFS---KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM-------- 411 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH--------
T ss_pred HHHHhccHHHHHHHHHHHHh---cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH--------
Confidence 88999999999999987743 233321 2233332 234678999999988876 556664433222
Q ss_pred ChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCCCccCCceeEE
Q 008183 386 KADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWI 445 (575)
Q Consensus 386 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~ 445 (575)
...+.+++++.++.+|.++.+|..|..+|...|++++|.+.+++..+.+-......+|+
T Consensus 412 -~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 412 -KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp -HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred -HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 34456777888889999999999999999999999999999999887665443444564
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.2e-12 Score=137.21 Aligned_cols=383 Identities=11% Similarity=0.035 Sum_probs=275.5
Q ss_pred CCCCccHHHHHHHHHhhCCCcccHHHHHHHHhHcCCChHHHHHHHccCC--CCChhhHHHHHHHH-hcCch---HH----
Q 008183 12 QNTSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIP--SPNIVSWTALISAH-SNSPL---SL---- 81 (575)
Q Consensus 12 ~~~~~~~~~~~~~~~~~g~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~-~~~g~---a~---- 81 (575)
.++.+.++.++.++++.-+.+...|..++..+.+.|++++|..+|++.. .|++..|...+.-. ...|+ |.
T Consensus 25 ~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~~~~~a~~~~~ 104 (530)
T 2ooe_A 25 NQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMA 104 (530)
T ss_dssp SSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTSTTHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHccchhhHHHHHH
Confidence 4677889999999988765778899999999999999999999999875 47877887776532 22333 44
Q ss_pred HHHHHHhhC-CCCCcCC-ChhhHHHHHHHHhh---------chhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHH-----
Q 008183 82 NIFLSMLRH-PTLSFLP-NQRTLASLFKTCAS---------LSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFY----- 145 (575)
Q Consensus 82 ~~~~~m~~~-~~~~~~p-~~~t~~~ll~~~~~---------~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~----- 145 (575)
.+|+..... | ..| +...|...+....+ .| +++.++.+++..++........+|.......
T Consensus 105 ~~~~~al~~~g---~~~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~ 180 (530)
T 2ooe_A 105 QAYDFALDKIG---MEIMSYQIWVDYINFLKGVEAVGSYAENQ-RITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINI 180 (530)
T ss_dssp HHHHHHHHHTT---TSTTCHHHHHHHHHHHHHSCCCSSTTHHH-HHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHCC---CCcccHHHHHHHHHHHhcCCCcccHHHHh-HHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhch
Confidence 477776553 3 334 44556665555443 56 8999999999999831111123443332211
Q ss_pred --------HhCCChHHHHHHHHh-------cC------CCC--------cchHHHHHHHHHhC----CCc----hHHHHH
Q 008183 146 --------SRFRSPDNAKKVFDE-------IR------ERD--------VVCYGAMIVGFAQN----SRL----VDSLSV 188 (575)
Q Consensus 146 --------~~~g~~~~A~~~f~~-------m~------~~~--------~~~~~~li~~~~~~----g~~----~~A~~~ 188 (575)
.+.++++.|..++.. +. .|+ ...|...+.-...+ ++. .+|+.+
T Consensus 181 ~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~ 260 (530)
T 2ooe_A 181 HLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFA 260 (530)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHH
Confidence 134567778776664 11 112 24566665443332 233 377889
Q ss_pred HHHhHHCCCCcCHHHHHHHHHHHHh-------cccHH-------HHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHH
Q 008183 189 FADMRSSDVGSTMYCVSGALRAAAE-------LAAME-------QCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254 (575)
Q Consensus 189 ~~~m~~~g~~p~~~t~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 254 (575)
|++.... .+-+...|......+.+ .|+++ +|..+++..++.-.+.+...+..++..+.+.|++++
T Consensus 261 y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~ 339 (530)
T 2ooe_A 261 YEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEK 339 (530)
T ss_dssp HHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHH
Confidence 9998774 23356677777777664 68876 899999998863235568899999999999999999
Q ss_pred HHHHHhhhCC-CC-Ch-hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHH
Q 008183 255 ARRVFDENLS-VL-NS-IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA-LCNAGLAGESEKWIERMK 330 (575)
Q Consensus 255 A~~~~~~~~~-~~-~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~m~ 330 (575)
|.++|++++. .| +. ..|...+..+.+.|+.++|.++|++..+... .+...|...... +...|+.++|..+|+...
T Consensus 340 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al 418 (530)
T 2ooe_A 340 VHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGL 418 (530)
T ss_dssp HHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 9999998665 33 32 5899999999999999999999999987532 223333322222 335899999999999885
Q ss_pred HhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC----CCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 008183 331 VRYKLEP-GLEHYTCLISAMGRAGRLEDAERIAMAM----PFEPD--AAVWRALLSFSAIHGKADMASKMGKRLIDINPY 403 (575)
Q Consensus 331 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 403 (575)
.. .| +...|..+++.+.+.|+.++|..+|++. +..|+ ...|...+......|+.+.+..+.+++.+..|.
T Consensus 419 ~~---~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 419 KK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HH---HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HH---CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 54 35 4789999999999999999999999987 23342 558999999999999999999999999988774
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.59 E-value=9.5e-12 Score=136.49 Aligned_cols=365 Identities=10% Similarity=0.063 Sum_probs=277.6
Q ss_pred CCCCccHHHHHHHHHhhC--C-CcccHHHHHHHHhHcCCChHHHHHHHccCCCCChhhHHHHHHHHhcCch---HHHHHH
Q 008183 12 QNTSTDPRIVHARALKSS--Q-ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFL 85 (575)
Q Consensus 12 ~~~~~~~~~~~~~~~~~g--~-~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~---a~~~~~ 85 (575)
.+.+..+..+++.++-.+ + .+....+.|+....+. +.....+..++...-+ ...+-..+...|. |..+|+
T Consensus 998 aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lglyEEAf~IYk 1073 (1630)
T 1xi4_A 998 ADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNELFEEAFAIFR 1073 (1630)
T ss_pred CCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCCCHHHHHHHHH
Confidence 455667777888777332 3 5567888888887777 5566666655554333 3334455566666 999998
Q ss_pred HHhhCCCCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCCCC
Q 008183 86 SMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERD 165 (575)
Q Consensus 86 ~m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~ 165 (575)
+... .....+.++. ..+ +++.|.++.+.+ .++.+|..+..++.+.|++++|.+.|... .|
T Consensus 1074 Ka~~--------~~~A~~VLie---~i~-nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD 1133 (1630)
T 1xi4_A 1074 KFDV--------NTSAVQVLIE---HIG-NLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DD 1133 (1630)
T ss_pred HcCC--------HHHHHHHHHH---HHh-hHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CC
Confidence 8532 1122333333 455 788888887754 45789999999999999999999999765 67
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 008183 166 VVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDG 245 (575)
Q Consensus 166 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 245 (575)
...|.-++..+.+.|++++|++.|...++.. ++....+.+..+|++.++++....+. + .++...+..+.+.
T Consensus 1134 ~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~ 1204 (1630)
T 1xi4_A 1134 PSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDR 1204 (1630)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHH
Confidence 8889999999999999999999999887754 44333445889999999888644442 2 4566677789999
Q ss_pred HHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008183 246 YGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKW 325 (575)
Q Consensus 246 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 325 (575)
|...|++++|..+|.. . ..|..+...|.+.|++++|.+.+++. -+..+|..+-.+|...|++..|...
T Consensus 1205 le~eg~YeeA~~~Y~k-A-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~c 1272 (1630)
T 1xi4_A 1205 CYDEKMYDAAKLLYNN-V-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMC 1272 (1630)
T ss_pred HHhcCCHHHHHHHHHh-h-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHH
Confidence 9999999999999998 3 58999999999999999999999876 3678999999999999999999886
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHc--CChHHHHHHHHHHHhcC
Q 008183 326 IERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEPD-AAVWRALLSFSAIH--GKADMASKMGKRLIDIN 401 (575)
Q Consensus 326 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~ 401 (575)
... +..+...+..++..|.+.|.+++|..+++.. ++.|. ...|+-|...+.+. ++..++.++|..-....
T Consensus 1273 gl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~ 1346 (1630)
T 1xi4_A 1273 GLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIP 1346 (1630)
T ss_pred HHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccc
Confidence 543 3456677789999999999999999999776 55553 56677777777665 45666677776555544
Q ss_pred C-----CCchhHHHHHHHHHhCCCchHHHHH
Q 008183 402 P-----YDDSAYVIVANVLSGVGRWDEVAEV 427 (575)
Q Consensus 402 p-----~~~~~~~~l~~~~~~~g~~~~a~~~ 427 (575)
| .+...|.-++-.|.+.|+|+.|...
T Consensus 1347 k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1347 KVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred hHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 4 4667899999999999999998843
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.1e-13 Score=125.03 Aligned_cols=196 Identities=16% Similarity=0.054 Sum_probs=153.6
Q ss_pred CCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008183 233 DRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL 310 (575)
Q Consensus 233 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 310 (575)
+++...+..+...+.+.|++++|...|++++. +.+...|..+...+.+.|++++|+..|++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 56677788888888899999999999887554 5567788888888999999999999999888763 22567778888
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHHHHHHH
Q 008183 311 TALCNA-----------GLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM-PFEPDAAVWRAL 377 (575)
Q Consensus 311 ~a~~~~-----------g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l 377 (575)
.++... |++++|...+++... +.|+ ...+..+...|...|++++|...|++. .+..+...|..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAER---VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 888888 999999999998853 3565 678888999999999999999999887 222778999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHh
Q 008183 378 LSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432 (575)
Q Consensus 378 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 432 (575)
..++...|++++|...++++++.+|.++.++..+..++...|++++|...+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999887653
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.57 E-value=4.1e-13 Score=126.04 Aligned_cols=218 Identities=13% Similarity=0.038 Sum_probs=150.4
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--C---CC----hhhHHH
Q 008183 203 CVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--V---LN----SIAWNA 273 (575)
Q Consensus 203 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~---~~----~~~~~~ 273 (575)
.+..+...+...|++++|...+..+++.. .+...+..+...|...|++++|.+.|++++. + ++ ...|..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34444445555555555555555555554 4555566666666666666666666655333 1 11 356666
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhcc
Q 008183 274 MMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRA 352 (575)
Q Consensus 274 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~ 352 (575)
+...|...|++++|+..|++..+. .|+. ..+...|++++|...++.... ..|+ ...+..+...+...
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAY---VNPEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHH---cCcchHHHHHHHHHHHHHh
Confidence 777777777777777777777664 3442 234555777888888877632 2343 56777788888888
Q ss_pred CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHH
Q 008183 353 GRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKV 430 (575)
Q Consensus 353 g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 430 (575)
|++++|...|++. ...| +..+|..+...+...|++++|...++++++..|.++.++..+..+|...|++++|...+++
T Consensus 153 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 8888888888776 2233 5788888888888899999999999999888888888888899999999999999988887
Q ss_pred HhhC
Q 008183 431 MKDR 434 (575)
Q Consensus 431 m~~~ 434 (575)
..+.
T Consensus 233 a~~~ 236 (258)
T 3uq3_A 233 ARTK 236 (258)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7653
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=2.9e-13 Score=128.59 Aligned_cols=242 Identities=10% Similarity=-0.106 Sum_probs=186.8
Q ss_pred hCCCchHHHHHHHHhHHCCCC--c-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHH
Q 008183 178 QNSRLVDSLSVFADMRSSDVG--S-TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254 (575)
Q Consensus 178 ~~g~~~~A~~~~~~m~~~g~~--p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 254 (575)
..|++++|++.|+++.+.... | +..++..+...+...|++++|...+..+++.. +.+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 457788888888888775321 1 34577778888888899999999998888874 5568888999999999999999
Q ss_pred HHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008183 255 ARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVR 332 (575)
Q Consensus 255 A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 332 (575)
|.+.|++++. +.+...|..+...|.+.|++++|...|+++.+. .|+.......+..+...|++++|...+......
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9999988554 456788999999999999999999999999875 344444445555567779999999999877544
Q ss_pred cCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCch
Q 008183 333 YKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEPD-----AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDS 406 (575)
Q Consensus 333 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 406 (575)
. +++...+ .++..+...++.++|...+++. ...|+ ..+|..+...+...|++++|...++++++.+|.+..
T Consensus 174 ~--~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 S--DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp S--CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred C--CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 2 3334444 4777788888899999999876 32332 578899999999999999999999999999987755
Q ss_pred hHHHHHHHHHhCCCchHHHHHH
Q 008183 407 AYVIVANVLSGVGRWDEVAEVR 428 (575)
Q Consensus 407 ~~~~l~~~~~~~g~~~~a~~~~ 428 (575)
.+ ..++...|++++|.+.+
T Consensus 251 ~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 EH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HH---HHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHhhHHHH
Confidence 43 55677778888877665
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.2e-13 Score=126.80 Aligned_cols=234 Identities=9% Similarity=-0.043 Sum_probs=172.1
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC--CCc----hhHHH
Q 008183 167 VCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGL--DRN----VIVGT 240 (575)
Q Consensus 167 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~----~~~~~ 240 (575)
..|..+...+...|++++|+..|++..+.. .+...+..+..++...|++++|...+..+++... .++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 356666777777777777777777776665 6666777777777777777777777777766421 111 46777
Q ss_pred HHHHHHHccCCHHHHHHHHhhhCC-CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 008183 241 GLIDGYGKAGIVSDARRVFDENLS-VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319 (575)
Q Consensus 241 ~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 319 (575)
.+...|.+.|++++|.+.|++++. .|+ ...+...|++++|...++++.... +.+...+..+...+...|++
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCH
Confidence 888888888888888888887444 333 234666788888888888887752 22456677778888888999
Q ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008183 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRL 397 (575)
Q Consensus 320 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 397 (575)
++|...+++..... +.+...+..+...|.+.|++++|...|++. ...| +..+|..+...+...|++++|...++++
T Consensus 156 ~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 156 PNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999998875432 234678888888999999999999988877 3344 4888899999999999999999999999
Q ss_pred HhcC------CCCchhHHHHH
Q 008183 398 IDIN------PYDDSAYVIVA 412 (575)
Q Consensus 398 ~~~~------p~~~~~~~~l~ 412 (575)
++.. |.+...+..+.
T Consensus 234 ~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 234 RTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HHHHHHHHTTTTHHHHHHHHH
T ss_pred HHhChhhcCCCchHHHHHHHH
Confidence 9887 66655544443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-11 Score=116.99 Aligned_cols=251 Identities=9% Similarity=-0.021 Sum_probs=147.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHHhcCC---CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcC--HHHHHHHHHHHH
Q 008183 138 GSALVHFYSRFRSPDNAKKVFDEIRE---RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGST--MYCVSGALRAAA 212 (575)
Q Consensus 138 ~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~ 212 (575)
.......+.+.|++++|...|++..+ .+...|..+...|...|++++|++.|++..+.+..|+ ...+..+...+.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 34455666777788888877777643 2445777777778888888888888887776332221 233666667777
Q ss_pred hcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHH
Q 008183 213 ELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLEL 290 (575)
Q Consensus 213 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l 290 (575)
..|++++|...+..+.+.. +.+..++..+...|...|++++|.+.|++++. +.+...|..+...+...+++++|++.
T Consensus 86 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777654 44556677777777777777777777776444 33444555555223333466666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCC
Q 008183 291 FHLLEMRGFAPDEYSFLAVLTALCNAGL---AGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPF 367 (575)
Q Consensus 291 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~---~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (575)
|++..+.. +.+...+..+..++...|+ .++|...+++......-.|+.. -
T Consensus 165 ~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~------------------------- 217 (272)
T 3u4t_A 165 FVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY-K------------------------- 217 (272)
T ss_dssp HHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG-H-------------------------
T ss_pred HHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc-h-------------------------
Confidence 66655532 1123333334433333333 3333333333321111011100 0
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 008183 368 EPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLS 416 (575)
Q Consensus 368 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 416 (575)
.....+|..+...|...|++++|...++++++++|.++.+...+.....
T Consensus 218 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 218 DELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhc
Confidence 0012567778888888999999999999999999988776665544443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-11 Score=117.07 Aligned_cols=226 Identities=7% Similarity=-0.139 Sum_probs=133.6
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHh----cccHHHHHHHHHHHHHhCCCCchhHHH
Q 008183 165 DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAE----LAAMEQCRVIHGHAVVSGLDRNVIVGT 240 (575)
Q Consensus 165 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~ 240 (575)
+..++..+...|...|++++|++.|++..+. -+...+..+...+.. .+++++|...+....+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3345555555666666666666666666552 233445555555555 666666666666666554 455566
Q ss_pred HHHHHHHc----cCCHHHHHHHHhhhCCCCChhhHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008183 241 GLIDGYGK----AGIVSDARRVFDENLSVLNSIAWNAMMAGYAQ----QGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312 (575)
Q Consensus 241 ~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 312 (575)
.+..+|.. .+++++|.+.|++.+...+..++..+...|.. .+++++|+..|++..+.+ +...+..+...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 66666666 66666666666664444555666666666666 666666666666666654 34455555555
Q ss_pred HHh----cCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhc----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHH-
Q 008183 313 LCN----AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGR----AGRLEDAERIAMAMPFEPDAAVWRALLSFSAI- 383 (575)
Q Consensus 313 ~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~- 383 (575)
+.. .+++++|...+++.... .+...+..+...|.. .+++++|...|++.--..+...+..|...|..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcC
Confidence 555 66667777666655322 234555556666666 66666666666654111225555566666666
Q ss_pred ---cCChHHHHHHHHHHHhcCCC
Q 008183 384 ---HGKADMASKMGKRLIDINPY 403 (575)
Q Consensus 384 ---~g~~~~a~~~~~~~~~~~p~ 403 (575)
.+++++|.+.+++..+.+|+
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTCH
T ss_pred CCcccCHHHHHHHHHHHHHcCCH
Confidence 66666676666666666653
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=2.3e-11 Score=115.54 Aligned_cols=225 Identities=8% Similarity=-0.105 Sum_probs=195.4
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHc----cCCHHHHHHHHhhhCCCCChhhHHHHH
Q 008183 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGK----AGIVSDARRVFDENLSVLNSIAWNAMM 275 (575)
Q Consensus 200 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~li 275 (575)
+..++..+...+...+++++|...+....+. .+...+..+...|.. .|++++|.+.|++.+...+..++..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4556777888888999999999999999984 356778889999999 999999999999977667888999999
Q ss_pred HHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 008183 276 AGYAQ----QGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN----AGLAGESEKWIERMKVRYKLEPGLEHYTCLIS 347 (575)
Q Consensus 276 ~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 347 (575)
..|.. .+++++|+..|++..+.+ +...+..+...+.. .+++++|..++++.. +.+ +...+..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~-~~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKAC-DLN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH-HTT---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHH-hcC---cHHHHHHHHH
Confidence 99999 999999999999998875 77888888888998 999999999999884 333 5677788888
Q ss_pred HHhc----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHh--
Q 008183 348 AMGR----AGRLEDAERIAMAMPFEPDAAVWRALLSFSAI----HGKADMASKMGKRLIDINPYDDSAYVIVANVLSG-- 417 (575)
Q Consensus 348 ~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 417 (575)
.|.. .+++++|...|++.--..+...+..+...+.. .+++++|...+++..+.+| +.++..|..+|..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCC
Confidence 8887 99999999999887323467888889999999 9999999999999999876 5688899999999
Q ss_pred --CCCchHHHHHHHHHhhCCC
Q 008183 418 --VGRWDEVAEVRKVMKDRRV 436 (575)
Q Consensus 418 --~g~~~~a~~~~~~m~~~~~ 436 (575)
.+++++|.+.+++..+.|.
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHTC
T ss_pred CcccCHHHHHHHHHHHHHcCC
Confidence 9999999999999887664
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.49 E-value=4.4e-12 Score=118.82 Aligned_cols=197 Identities=10% Similarity=-0.039 Sum_probs=127.2
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008183 236 VIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313 (575)
Q Consensus 236 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 313 (575)
...+..+...|...|++++|.+.|++++. +.+...|..+...|...|++++|.+.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 34555566666666666666666665333 3345566666666667777777777776666543 22455666666666
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHH
Q 008183 314 CNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMA 390 (575)
Q Consensus 314 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a 390 (575)
...|++++|..+++++.. .+..|+ ...+..+...|.+.|++++|.+.|++. ...| +...|..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 777777777777766632 223343 456666666777777777777777665 2223 466677777777777777777
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 391 SKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 391 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
...++++.+..|.+...+..+...|...|++++|.+.++++.+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 77777777777766667777777777777777777777776654
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.48 E-value=8.9e-12 Score=116.69 Aligned_cols=206 Identities=10% Similarity=-0.013 Sum_probs=126.1
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 008183 166 VVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDG 245 (575)
Q Consensus 166 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 245 (575)
...|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.+..+.+.. +.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~----------- 103 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SR----------- 103 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT-----------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cC-----------
Confidence 4567777777778888888888877776532 2234444555555555555555555555554442 22
Q ss_pred HHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 008183 246 YGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAP-DEYSFLAVLTALCNAGLAGESEK 324 (575)
Q Consensus 246 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~ 324 (575)
+...|..+...|...|++++|++.|+++.+.+..| +...+..+...+...|++++|..
T Consensus 104 ---------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 162 (252)
T 2ho1_A 104 ---------------------NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKE 162 (252)
T ss_dssp ---------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ---------------------cHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 33444444455555555555555555554422233 23445555566666666666666
Q ss_pred HHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 008183 325 WIERMKVRYKLEP-GLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDIN 401 (575)
Q Consensus 325 ~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 401 (575)
++.+.... .| +...+..+...|...|++++|...+++. ...| +...+..+...+...|+.++|.+.++++.+..
T Consensus 163 ~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 163 YFEKSLRL---NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 66665332 23 3566667777777777777777777765 3333 46677777788888888888888888888888
Q ss_pred CCCchhH
Q 008183 402 PYDDSAY 408 (575)
Q Consensus 402 p~~~~~~ 408 (575)
|.++...
T Consensus 240 p~~~~~~ 246 (252)
T 2ho1_A 240 PGSLEYQ 246 (252)
T ss_dssp TTSHHHH
T ss_pred CCCHHHH
Confidence 8776543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.48 E-value=6.1e-12 Score=125.04 Aligned_cols=244 Identities=10% Similarity=0.001 Sum_probs=201.2
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCc-CHHHHHHHHHHHHhccc-HHHHHHHHHHHHHhCCCCchhHHHHHH
Q 008183 166 VVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS-TMYCVSGALRAAAELAA-MEQCRVIHGHAVVSGLDRNVIVGTGLI 243 (575)
Q Consensus 166 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~li 243 (575)
...|+.+...+.+.|++++|++.|++.... .| +...|..+..++...|+ +++|...++.+++.. +.+..+|+.+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 456888888899999999999999998874 45 45678888888889996 999999999999875 55788999999
Q ss_pred HHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHH
Q 008183 244 DGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN-AGLAG 320 (575)
Q Consensus 244 ~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~-~g~~~ 320 (575)
.+|.+.|++++|...|++++. +.+...|..+...+.+.|++++|+..|+++.+.... +...|+.+..++.. .|..+
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 999999999999999998655 668889999999999999999999999999987443 67888888888888 66657
Q ss_pred HH-----HHHHHHHHHhcCCCCC-hhHHHHHHHHHhccC--ChHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcC------
Q 008183 321 ES-----EKWIERMKVRYKLEPG-LEHYTCLISAMGRAG--RLEDAERIAMAMPFEPD-AAVWRALLSFSAIHG------ 385 (575)
Q Consensus 321 ~a-----~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~p~-~~~~~~ll~~~~~~g------ 385 (575)
+| ...+.+... +.|+ ...|..+...|.+.| ++++|.+.++++...|+ ...+..+...|...|
T Consensus 253 eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 76 477776643 4565 678888888899888 68999999888755564 788888999988864
Q ss_pred --C-hHHHHHHHHHH-HhcCCCCchhHHHHHHHHH
Q 008183 386 --K-ADMASKMGKRL-IDINPYDDSAYVIVANVLS 416 (575)
Q Consensus 386 --~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~ 416 (575)
+ .++|.++++++ .+.+|.....|..+...+.
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 2 58999999999 8999988888887766554
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.48 E-value=5.9e-12 Score=115.34 Aligned_cols=196 Identities=13% Similarity=0.062 Sum_probs=121.9
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008183 236 VIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313 (575)
Q Consensus 236 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 313 (575)
...+..+...|...|++++|.+.|++++. +.+...|..+...|...|++++|.+.|++..+.. +.+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 44555556666666666666666655332 3345556666666666666666666666665542 22455666666666
Q ss_pred Hhc-CCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHH
Q 008183 314 CNA-GLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADM 389 (575)
Q Consensus 314 ~~~-g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~ 389 (575)
... |++++|..+++.+.. .+..|+ ...+..+...+...|++++|...|+++ ...| +...|..+...+...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 666 677777766666633 222333 455666666666777777777666665 2233 36666677777777777777
Q ss_pred HHHHHHHHHhcCC-CCchhHHHHHHHHHhCCCchHHHHHHHHHhh
Q 008183 390 ASKMGKRLIDINP-YDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 390 a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 433 (575)
|...++++.+..| .++..+..+...+...|+.++|..+++.+.+
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 7777777777776 6666666667777777777777777776654
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.9e-12 Score=115.78 Aligned_cols=194 Identities=14% Similarity=0.008 Sum_probs=113.5
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 008183 165 DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLID 244 (575)
Q Consensus 165 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 244 (575)
+...|..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++..++.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 33445555555555555555555555554421 1233444555555555555555555555555543 334455555555
Q ss_pred HHHcc-----------CCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008183 245 GYGKA-----------GIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311 (575)
Q Consensus 245 ~~~~~-----------g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 311 (575)
.|.+. |++++|.+.|++++. +.+...|..+...|...|++++|+..|++..+.. .+...+..+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 56555 777777777776443 4456677777777888888888888888777766 57777777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC
Q 008183 312 ALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM 365 (575)
Q Consensus 312 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (575)
++...|++++|...|++.... .|+ ...+..+...+.+.|++++|...|++.
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQ---APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTC--------------
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 788888888888888777432 454 566777777788888888887777654
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.2e-11 Score=111.51 Aligned_cols=203 Identities=15% Similarity=0.049 Sum_probs=127.3
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHH
Q 008183 203 CVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQ 280 (575)
Q Consensus 203 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~ 280 (575)
.+..+...+...|++++|.+.+..+.+.. +.+...+..+...|...|++++|.+.|++++. +.+...|..+...|..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 88 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCG 88 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 33444444444455555555544444432 33344555566666666666666666655332 3345556666666666
Q ss_pred c-CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHH
Q 008183 281 Q-GDQSTVLELFHLLEMRGFAPD-EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLED 357 (575)
Q Consensus 281 ~-g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~ 357 (575)
. |++++|+..|+++.+.+..|+ ...+..+..++...|++++|...+.+.... .|+ ...+..+...|.+.|++++
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 89 RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA---QPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHH
T ss_pred hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHH
Confidence 6 677777777766665323333 455666667777777777777777766432 333 5667777777778888888
Q ss_pred HHHHHHhC-CCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHH
Q 008183 358 AERIAMAM-PFE--PDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYV 409 (575)
Q Consensus 358 A~~~~~~m-~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 409 (575)
|...+++. ... .+...+..+...+...|+.+.|..+++.+.+..|.++....
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 220 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQT 220 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHH
Confidence 88777766 222 35666777777778888888888888888888887765543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=2.9e-12 Score=119.18 Aligned_cols=170 Identities=16% Similarity=0.095 Sum_probs=86.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 008183 239 GTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316 (575)
Q Consensus 239 ~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 316 (575)
+..+...|.+.|++++|.+.|++++. +.+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+...
T Consensus 60 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~ 138 (243)
T 2q7f_A 60 YINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKL 138 (243)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHh
Confidence 33333344444444444444433221 2233444444444445555555555555444432 22344455555555555
Q ss_pred CCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHH
Q 008183 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMG 394 (575)
Q Consensus 317 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 394 (575)
|++++|..++++..... +.+...+..+...|.+.|++++|.+.|++. ...| +..+|..+...+...|++++|...+
T Consensus 139 ~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 216 (243)
T 2q7f_A 139 EQPKLALPYLQRAVELN--ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEML 216 (243)
T ss_dssp SCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHH
Confidence 55555555555553221 123445555555666666666666666554 1222 3556666666666677777777777
Q ss_pred HHHHhcCCCCchhHHHH
Q 008183 395 KRLIDINPYDDSAYVIV 411 (575)
Q Consensus 395 ~~~~~~~p~~~~~~~~l 411 (575)
+++.+..|.++.++..+
T Consensus 217 ~~~~~~~p~~~~~~~~~ 233 (243)
T 2q7f_A 217 DKAIDIQPDHMLALHAK 233 (243)
T ss_dssp HHHHHHCTTCHHHHHHH
T ss_pred HHHHccCcchHHHHHHH
Confidence 77777666665554443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=4.9e-12 Score=117.57 Aligned_cols=199 Identities=10% Similarity=0.025 Sum_probs=156.2
Q ss_pred CchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008183 234 RNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311 (575)
Q Consensus 234 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 311 (575)
.....+..+...+...|++++|.+.|++++. +.+...|..+...|...|++++|++.|++..+.. +.+..++..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 3456777888889999999999999998554 4567889999999999999999999999998864 336788888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHH
Q 008183 312 ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADM 389 (575)
Q Consensus 312 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~ 389 (575)
.+...|++++|..+++++.... +.+...+..+...|.+.|++++|...+++. ...| +...|..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999885432 235778889999999999999999999887 3334 68899999999999999999
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCC
Q 008183 390 ASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435 (575)
Q Consensus 390 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 435 (575)
|...++++.+..|.++.++..+..+|...|++++|...+++..+..
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999987643
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.43 E-value=2e-12 Score=130.79 Aligned_cols=259 Identities=12% Similarity=0.002 Sum_probs=155.5
Q ss_pred HHHHHhCCCchHHHHHHHHhHHCCCCcC-H----HHHHHHHHHHHhcccHHHHHHHHHHHHHh----C-CCCchhHHHHH
Q 008183 173 IVGFAQNSRLVDSLSVFADMRSSDVGST-M----YCVSGALRAAAELAAMEQCRVIHGHAVVS----G-LDRNVIVGTGL 242 (575)
Q Consensus 173 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g-~~~~~~~~~~l 242 (575)
...+...|++++|+..|++..+.+ |+ . ..+..+...+...|++++|...+...++. + .+....++..+
T Consensus 55 g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 55 GERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 334444455555555555444421 21 1 23444444444455555555554444332 1 01123455556
Q ss_pred HHHHHccCCHHHHHHHHhhhCCC--------CChhhHHHHHHHHHHcCC-----------------hHHHHHHHHHHHHc
Q 008183 243 IDGYGKAGIVSDARRVFDENLSV--------LNSIAWNAMMAGYAQQGD-----------------QSTVLELFHLLEMR 297 (575)
Q Consensus 243 i~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~li~~~~~~g~-----------------~~~A~~l~~~m~~~ 297 (575)
...|...|++++|.+.|++++.. ....+|..+...|...|+ +++|++.+++..+.
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 66666666666666666553320 122355666666666777 67777666655332
Q ss_pred ----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhccCChHHHHHHHHhC---
Q 008183 298 ----GFAP-DEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG----LEHYTCLISAMGRAGRLEDAERIAMAM--- 365 (575)
Q Consensus 298 ----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m--- 365 (575)
+..| ...++..+...+...|++++|..++++......-.++ ...+..+...|...|++++|...+++.
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 292 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 1111 2246666777777888888888888766432211112 236777888888888888888887765
Q ss_pred -CCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC------CchhHHHHHHHHHhCCCchHHHHHHHHHhh
Q 008183 366 -PFEP----DAAVWRALLSFSAIHGKADMASKMGKRLIDINPY------DDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 366 -~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 433 (575)
+-.. ...++..+...+...|++++|...++++++..+. ...++..+..+|...|++++|...+++..+
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1011 1567788888888999999999999888875422 234778889999999999999999887765
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=5.9e-12 Score=119.44 Aligned_cols=218 Identities=6% Similarity=-0.161 Sum_probs=111.8
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 008183 168 CYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYG 247 (575)
Q Consensus 168 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 247 (575)
+|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...+..+++.. +.+..++..+...|.
T Consensus 45 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~ 122 (275)
T 1xnf_A 45 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALY 122 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHH
Confidence 44444555555555555555555554421 1234445555555555555555555555555542 334555666666666
Q ss_pred ccCCHHHHHHHHhhhCC-CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008183 248 KAGIVSDARRVFDENLS-VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326 (575)
Q Consensus 248 ~~g~~~~A~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 326 (575)
+.|++++|.+.|++++. .|+...+...+..+...|++++|...+++..... +++...+ .++..+...++.++|...+
T Consensus 123 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~ 200 (275)
T 1xnf_A 123 YGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERL 200 (275)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHH
Confidence 66666666666665333 2333333333334455566666666666555442 2232233 2455555566666666666
Q ss_pred HHHHHhcCCCCC-----hhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 008183 327 ERMKVRYKLEPG-----LEHYTCLISAMGRAGRLEDAERIAMAM-PFEPDAAVWRALLSFSAIHGKADMASKMG 394 (575)
Q Consensus 327 ~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 394 (575)
.... ...|+ ...+..+...|.+.|++++|...|++. ...|+. +.....++...|++++|.+.+
T Consensus 201 ~~~~---~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 201 KADA---TDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHC---CSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHh---cccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 6542 12221 356666677777777777777777666 344521 122233445556666665544
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=8.6e-12 Score=125.54 Aligned_cols=196 Identities=14% Similarity=0.035 Sum_probs=118.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHhhhCC----CCC----hhhHHHHHHHHHHcCC--------------------hHHHHH
Q 008183 238 VGTGLIDGYGKAGIVSDARRVFDENLS----VLN----SIAWNAMMAGYAQQGD--------------------QSTVLE 289 (575)
Q Consensus 238 ~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~~li~~~~~~g~--------------------~~~A~~ 289 (575)
++..+...|...|++++|...+++++. .++ ..++..+...|...|+ +++|++
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 444455555555555555555554322 111 2345555556666666 666666
Q ss_pred HHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhccCChHHHHH
Q 008183 290 LFHLLEMR----GFAP-DEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG----LEHYTCLISAMGRAGRLEDAER 360 (575)
Q Consensus 290 l~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~ 360 (575)
.+++..+. +..| ...++..+...+...|++++|...+++......-.++ ...+..+...|...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 66554321 1111 1235566666677777777777777666432211122 2366677777777788777777
Q ss_pred HHHhC----CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------chhHHHHHHHHHhCCCchHHHH
Q 008183 361 IAMAM----PFEPD----AAVWRALLSFSAIHGKADMASKMGKRLIDINPYD------DSAYVIVANVLSGVGRWDEVAE 426 (575)
Q Consensus 361 ~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~ 426 (575)
.+++. +..++ ..++..+...+...|++++|...++++.+..+.. ..++..+...|...|++++|..
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 77665 11111 4567777778888888888888888877654221 3467778888888888888888
Q ss_pred HHHHHhh
Q 008183 427 VRKVMKD 433 (575)
Q Consensus 427 ~~~~m~~ 433 (575)
.+++..+
T Consensus 329 ~~~~al~ 335 (406)
T 3sf4_A 329 FAEKHLE 335 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.1e-11 Score=120.97 Aligned_cols=260 Identities=14% Similarity=0.026 Sum_probs=161.3
Q ss_pred HHHHHhCCCchHHHHHHHHhHHCCCCcC-----HHHHHHHHHHHHhcccHHHHHHHHHHHHHh----CCC-CchhHHHHH
Q 008183 173 IVGFAQNSRLVDSLSVFADMRSSDVGST-----MYCVSGALRAAAELAAMEQCRVIHGHAVVS----GLD-RNVIVGTGL 242 (575)
Q Consensus 173 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~-~~~~~~~~l 242 (575)
...+...|++++|+..|+++.+.. |+ ...+..+...+...|++++|...+....+. +.. ....++..+
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 344445555555555555554431 21 133444444555555555555555444322 111 123455666
Q ss_pred HHHHHccCCHHHHHHHHhhhCC----CCC----hhhHHHHHHHHHHcCC--------------------hHHHHHHHHHH
Q 008183 243 IDGYGKAGIVSDARRVFDENLS----VLN----SIAWNAMMAGYAQQGD--------------------QSTVLELFHLL 294 (575)
Q Consensus 243 i~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~~li~~~~~~g~--------------------~~~A~~l~~~m 294 (575)
...|...|++++|.+.+++++. .++ ..++..+...|...|+ +++|.+.+++.
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 6667777777777766665332 112 2356666667777777 77777777665
Q ss_pred HHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhccCChHHHHHHHHhC
Q 008183 295 EMR----GFAP-DEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG----LEHYTCLISAMGRAGRLEDAERIAMAM 365 (575)
Q Consensus 295 ~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (575)
... +..| ...++..+...+...|++++|...+++......-.++ ...+..+...|...|++++|...+++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 249 (338)
T 3ro2_A 170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 432 1111 1345666777778888888888888776432211122 346777888888889998888888765
Q ss_pred ----CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------chhHHHHHHHHHhCCCchHHHHHHHHH
Q 008183 366 ----PFEPD----AAVWRALLSFSAIHGKADMASKMGKRLIDINPYD------DSAYVIVANVLSGVGRWDEVAEVRKVM 431 (575)
Q Consensus 366 ----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m 431 (575)
+..++ ..++..+...+...|++++|...++++++..+.. ..++..+...|...|++++|...+++.
T Consensus 250 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 11122 5677788888999999999999999888754321 347778999999999999999999887
Q ss_pred hhC
Q 008183 432 KDR 434 (575)
Q Consensus 432 ~~~ 434 (575)
.+.
T Consensus 330 ~~~ 332 (338)
T 3ro2_A 330 LEI 332 (338)
T ss_dssp HHC
T ss_pred HHH
Confidence 753
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.41 E-value=1.2e-11 Score=122.89 Aligned_cols=227 Identities=10% Similarity=0.025 Sum_probs=193.6
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCC-HHHHHHHHhhhCC--CCChhhHHHHHHHH
Q 008183 202 YCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI-VSDARRVFDENLS--VLNSIAWNAMMAGY 278 (575)
Q Consensus 202 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~--~~~~~~~~~li~~~ 278 (575)
..|..+...+...|++++|...+..+++.. +.+..+|+.+..+|.+.|+ +++|++.|++++. +.+...|+.+...+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 467777778888999999999999999875 5678899999999999997 9999999998665 66788999999999
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhc-cCChH
Q 008183 279 AQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGR-AGRLE 356 (575)
Q Consensus 279 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~-~g~~~ 356 (575)
...|++++|+..|+++.+.... +...|..+..++...|++++|...++++... .|+ ...|+.+..+|.+ .|..+
T Consensus 177 ~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999987433 7788999999999999999999999988543 564 7889999999998 66668
Q ss_pred HH-----HHHHHhC-CCCC-CHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCC--------
Q 008183 357 DA-----ERIAMAM-PFEP-DAAVWRALLSFSAIHG--KADMASKMGKRLIDINPYDDSAYVIVANVLSGVG-------- 419 (575)
Q Consensus 357 ~A-----~~~~~~m-~~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 419 (575)
+| +..|++. .+.| +...|..+...+...| ++++|.+.+.++ +.+|+++.++..|+.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 87 4666665 4566 4889999999998888 689999999998 888999999999999999874
Q ss_pred -CchHHHHHHHHH-hhC
Q 008183 420 -RWDEVAEVRKVM-KDR 434 (575)
Q Consensus 420 -~~~~a~~~~~~m-~~~ 434 (575)
.+++|.++++++ .+.
T Consensus 332 ~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 332 DILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 258999999998 543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.7e-11 Score=125.45 Aligned_cols=374 Identities=10% Similarity=-0.016 Sum_probs=235.3
Q ss_pred HHHHhHcCCChHHHHHHHccCCC-CChhhHHHHHHHHhcCch------HHHHHHHHhhCCCCCcCCChhhHHHHHHHHhh
Q 008183 39 LITNYSKSNLLSYSLRLFNHIPS-PNIVSWTALISAHSNSPL------SLNIFLSMLRHPTLSFLPNQRTLASLFKTCAS 111 (575)
Q Consensus 39 li~~~~~~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~~g~------a~~~~~~m~~~~~~~~~p~~~t~~~ll~~~~~ 111 (575)
+...+.+.|++++|.+.|.+..+ .+...+..|-..|...|+ |++.|++..+ . +...+..+-..+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~-----~--~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAAD-----T--SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC-----------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh-----C--CHHHHHHHHHHHHh
Confidence 45566777888888888876642 233333333333333333 6777766653 2 33444444442333
Q ss_pred ch----hhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHH---HHHHHHhcCC-CCcchHHHHHHHHHhCCCch
Q 008183 112 LS----HAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDN---AKKVFDEIRE-RDVVCYGAMIVGFAQNSRLV 183 (575)
Q Consensus 112 ~~----~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~---A~~~f~~m~~-~~~~~~~~li~~~~~~g~~~ 183 (575)
.+ ++.+.|...+....+.|.. ..+..|..+|...+..++ +.+.+....+ .+...+..+...|...+.++
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGG
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcc
Confidence 22 2778888888888886632 366667777777665443 3334433332 36677888888888888666
Q ss_pred HHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcc----CCHHHHH
Q 008183 184 DSLSVFADMRSSDVGSTMYCVSGALRAAAELA---AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKA----GIVSDAR 256 (575)
Q Consensus 184 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~---~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~----g~~~~A~ 256 (575)
++........+.-...+...+..+...+...| +.++|...+....+.| +++...+..|..+|... +++++|.
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 65555333332212223336777777777788 8899999999998887 56666667788888665 7999999
Q ss_pred HHHhhhCCCCChhhHHHHHHH-H--HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHH
Q 008183 257 RVFDENLSVLNSIAWNAMMAG-Y--AQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG-----LAGESEKWIER 328 (575)
Q Consensus 257 ~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g-----~~~~a~~~~~~ 328 (575)
+.|+... +.+...+..|... | ...+++++|++.|++..+.| +...+..|...|. .| ++++|..+|++
T Consensus 238 ~~~~~aa-~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~ 312 (452)
T 3e4b_A 238 ALLEKIA-PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEK 312 (452)
T ss_dssp HHHHHHG-GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHT
T ss_pred HHHHHHc-CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHH
Confidence 9999966 6677788888777 4 46889999999999998877 5566666666665 45 99999999986
Q ss_pred HHHhcCCCCChhHHHHHHHHHhc----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhc
Q 008183 329 MKVRYKLEPGLEHYTCLISAMGR----AGRLEDAERIAMAMPFEPDAAVWRALLSFSAI----HGKADMASKMGKRLIDI 400 (575)
Q Consensus 329 m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~ 400 (575)
.. .-+...+..|..+|.. ..++++|..+|++.--..+......|...|.. ..+.++|...++...+.
T Consensus 313 Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 387 (452)
T 3e4b_A 313 AV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ 387 (452)
T ss_dssp TT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT
T ss_pred Hh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC
Confidence 62 3456777777777766 44899999999887323345555666666653 45899999999999988
Q ss_pred CCCCchhHHHHHHHHHhCCCchHHHHHHHHHhh
Q 008183 401 NPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 401 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 433 (575)
++.........+......++.++|.++.++.+.
T Consensus 388 g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 388 DTPEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp CCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 864433333333333334456667777666543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.40 E-value=5.3e-11 Score=112.69 Aligned_cols=226 Identities=9% Similarity=-0.026 Sum_probs=158.1
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCC-Ch----hhHHHHHHHHH
Q 008183 205 SGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL-NS----IAWNAMMAGYA 279 (575)
Q Consensus 205 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~----~~~~~li~~~~ 279 (575)
......+...|++++|...+..+++.. +.+...+..+...|...|++++|.+.|++++..+ +. .+|..+...|.
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 334445555666666666666665543 3345566677777777777777777777654422 11 23677777788
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHH
Q 008183 280 QQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDA 358 (575)
Q Consensus 280 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A 358 (575)
..|++++|++.|++..+... .+..++..+...+...|++++|...+++.. .+.|+ ...+..+...+...+++++|
T Consensus 86 ~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al---~~~~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQI---RPTTTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGC---CSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHh---hcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888887776532 245677778888888888888888887663 33454 56666666233334588888
Q ss_pred HHHHHhC-CCCCC-HHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcC---CCC-----chhHHHHHHHHHhCCCchHHH
Q 008183 359 ERIAMAM-PFEPD-AAVWRALLSFSAIHGK---ADMASKMGKRLIDIN---PYD-----DSAYVIVANVLSGVGRWDEVA 425 (575)
Q Consensus 359 ~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~a~ 425 (575)
.+.|++. ...|+ ...|..+...+...|+ .++|...++++++.. |.. ..+|..+...|...|++++|.
T Consensus 162 ~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 162 DSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 8888877 33453 7777788888888888 888999999888754 432 247888999999999999999
Q ss_pred HHHHHHhhCC
Q 008183 426 EVRKVMKDRR 435 (575)
Q Consensus 426 ~~~~~m~~~~ 435 (575)
..+++..+..
T Consensus 242 ~~~~~al~~~ 251 (272)
T 3u4t_A 242 AAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhcC
Confidence 9999988653
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.5e-10 Score=119.36 Aligned_cols=295 Identities=9% Similarity=-0.053 Sum_probs=164.6
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHhcCC------------CCcchHHHHHHHHHhCCCchHHHHHHHHhHHC-----C-
Q 008183 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRE------------RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS-----D- 196 (575)
Q Consensus 135 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g- 196 (575)
...||.|-..|...|++++|++.|++..+ ...++|+.+...|...|++++|+..|++..+. +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 34566666666666666666666654321 12345666666666667776666666655431 0
Q ss_pred CCc-CHHHHHHHHHHHHh--cccHHHHHHHHHHHHHhCCCCchhHHHHHHHH---HHccCCHHHHHHHHhhhCC--CCCh
Q 008183 197 VGS-TMYCVSGALRAAAE--LAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDG---YGKAGIVSDARRVFDENLS--VLNS 268 (575)
Q Consensus 197 ~~p-~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~~~~--~~~~ 268 (575)
..+ ...++.....++.. .+++++|...|+..++.. +.+...+..+..+ +...++.++|.+.|++++. +.+.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 011 22344444334333 235666766666666653 2334444444333 2334555566666655333 3344
Q ss_pred hhHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHH
Q 008183 269 IAWNAMMAGYAQ----QGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYT 343 (575)
Q Consensus 269 ~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~ 343 (575)
..+..+...+.. .|+.++|.+.+++..... +.+..++..+...+...|++++|...+.+.... .|+ ..++.
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~ 285 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY---IPNNAYLHC 285 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh---CCChHHHHH
Confidence 445444444333 345566666666665542 234555666666666677777777766665322 343 44444
Q ss_pred HHHHHHhc-------------------cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 008183 344 CLISAMGR-------------------AGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINP 402 (575)
Q Consensus 344 ~li~~~~~-------------------~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 402 (575)
.+...|.. .+..++|...|++. ...| +..+|..+...+...|++++|+..++++++..|
T Consensus 286 ~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~ 365 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKEL 365 (472)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 44444322 12345666666655 2233 356677788888888899999999888888776
Q ss_pred CCch---hHHHHHHH-HHhCCCchHHHHHHHHHhhC
Q 008183 403 YDDS---AYVIVANV-LSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 403 ~~~~---~~~~l~~~-~~~~g~~~~a~~~~~~m~~~ 434 (575)
++.. .+..+... +...|++++|...+++..+.
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i 401 (472)
T 4g1t_A 366 TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI 401 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 5433 23334333 34678888888888877653
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=5.3e-12 Score=127.08 Aligned_cols=291 Identities=12% Similarity=0.016 Sum_probs=165.3
Q ss_pred hhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCc---hhHHHHHHHHHHhCCChHHHHHHHHhcCC-----C----Ccc
Q 008183 100 RTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK---PFCGSALVHFYSRFRSPDNAKKVFDEIRE-----R----DVV 167 (575)
Q Consensus 100 ~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~f~~m~~-----~----~~~ 167 (575)
..+...-..+...| +++.|...++.+++...... ..++..+...|...|++++|...|++..+ . ...
T Consensus 10 ~~l~~~g~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 10 LELALEGERLCKSG-DCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhc-cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 33444444455555 66666666666555532111 13444555555555555555555544321 0 122
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC-CchhHHHHHHHHH
Q 008183 168 CYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLD-RNVIVGTGLIDGY 246 (575)
Q Consensus 168 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~~ 246 (575)
+|..+...|...|++++|+..|++..... |+ .+-+ ....++..+...|
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~-----------------------------~~~~~~~~~~~~~l~~~~ 137 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDIS--RE-----------------------------LNDKVGEARALYNLGNVY 137 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HH-----------------------------HTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH--Hh-----------------------------cccccchHHHHHHHHHHH
Confidence 34444455555555555555555443310 00 0000 0123455555555
Q ss_pred HccCC--------------------HHHHHHHHhhhCC----CC----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 008183 247 GKAGI--------------------VSDARRVFDENLS----VL----NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRG 298 (575)
Q Consensus 247 ~~~g~--------------------~~~A~~~~~~~~~----~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 298 (575)
...|+ +++|.+.+++.+. .. ...+|..+...|...|++++|+..|++..+..
T Consensus 138 ~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 217 (406)
T 3sf4_A 138 HAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 217 (406)
T ss_dssp HHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH
T ss_pred HHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 55565 5555555554222 11 12356666677777777777777777665421
Q ss_pred -CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhccCChHHHHHHHHhC----
Q 008183 299 -FAPD----EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG----LEHYTCLISAMGRAGRLEDAERIAMAM---- 365 (575)
Q Consensus 299 -~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---- 365 (575)
-.++ ..++..+...+...|++++|...+++......-.++ ..++..+...|...|++++|...+++.
T Consensus 218 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 297 (406)
T 3sf4_A 218 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 297 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 0112 236667777778888888888888766432111111 456777888888889988888888766
Q ss_pred CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------CCCchhHHHHHHHHHhCCCch
Q 008183 366 PFEPD----AAVWRALLSFSAIHGKADMASKMGKRLIDIN------PYDDSAYVIVANVLSGVGRWD 422 (575)
Q Consensus 366 ~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~ 422 (575)
+..++ ..++..+...+...|++++|...+++.++.. +....++..+...|...|+..
T Consensus 298 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 298 QELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 11122 5678888889999999999999999988753 222346667777777777653
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.38 E-value=7.2e-11 Score=120.83 Aligned_cols=310 Identities=10% Similarity=0.025 Sum_probs=184.7
Q ss_pred HHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCCh---HHHHHHHHhcCCCCcchHHHHHHHHHhCC--
Q 008183 106 FKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP---DNAKKVFDEIRERDVVCYGAMIVGFAQNS-- 180 (575)
Q Consensus 106 l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~f~~m~~~~~~~~~~li~~~~~~g-- 180 (575)
-..+.+.| +++.|.+++....+.|. +..+..|-.+|...|+. ++|...|+...+.+...+..+...+...|
T Consensus 10 a~~~~~~g-~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 10 ANEALKRG-DTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHTC---CTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHhCC-CHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 34455667 88888888888888762 33344455666667777 88888888877667777777777565655
Q ss_pred ---CchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHH---HHHHHHHHHHHhCCCCchhHHHHHHHHHHccC----
Q 008183 181 ---RLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAME---QCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG---- 250 (575)
Q Consensus 181 ---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~---~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---- 250 (575)
++++|++.|++..+.|... .+..+...+...+..+ .+.+.+......| +......|...|...+
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGG
T ss_pred CCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCccc
Confidence 6778888888888766433 4444555555544332 3344444444444 3455666777777776
Q ss_pred CHHHHHHHHhhhCCCCChhhHHHHHHHHHHcC---ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CCHHHHH
Q 008183 251 IVSDARRVFDENLSVLNSIAWNAMMAGYAQQG---DQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA----GLAGESE 323 (575)
Q Consensus 251 ~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~----g~~~~a~ 323 (575)
..+.+..+++. ....+..++..|...|...| +.++|++.|++..+.|. ++...+..+...|... ++.++|.
T Consensus 160 ~~~~a~~~~~~-a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 160 HLDDVERICKA-ALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GHHHHHHHHHH-HTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred CHHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 34445555555 44455557777777888888 78888888888777763 3455444555555443 6788888
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHH-H--hccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-----ChHHHHHHHH
Q 008183 324 KWIERMKVRYKLEPGLEHYTCLISA-M--GRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHG-----KADMASKMGK 395 (575)
Q Consensus 324 ~~~~~m~~~~~~~p~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g-----~~~~a~~~~~ 395 (575)
.+|+... .-+...+..|..+ | ...|++++|.++|++.--..+...+..|...|. .| ++++|...++
T Consensus 238 ~~~~~aa-----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~ 311 (452)
T 3e4b_A 238 ALLEKIA-----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFE 311 (452)
T ss_dssp HHHHHHG-----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHH
T ss_pred HHHHHHc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHH
Confidence 8887662 2345566666665 3 457788888888877632335667777776666 44 7888888888
Q ss_pred HHHhcCCCCchhHHHHHHHHHh----CCCchHHHHHHHHHhhCCC
Q 008183 396 RLIDINPYDDSAYVIVANVLSG----VGRWDEVAEVRKVMKDRRV 436 (575)
Q Consensus 396 ~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 436 (575)
+.. |.++.++..|..+|.. ..++++|...|++..+.|.
T Consensus 312 ~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 312 KAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp TTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred HHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 777 6677777777777776 3477788888887776654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.36 E-value=6.9e-12 Score=129.23 Aligned_cols=209 Identities=11% Similarity=-0.028 Sum_probs=173.9
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCH-HHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHH
Q 008183 217 MEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV-SDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHL 293 (575)
Q Consensus 217 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 293 (575)
++.+.+.+...... .+.+...+..+...|...|++ ++|.+.|++++. +.+...|..+...|.+.|++++|++.|++
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44555555554433 244677888888899999999 999999988554 45678899999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhcc--------CCh
Q 008183 294 LEMRGFAPDEYSFLAVLTALCNA---------GLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRA--------GRL 355 (575)
Q Consensus 294 m~~~g~~p~~~t~~~ll~a~~~~---------g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~--------g~~ 355 (575)
..+. .|+...+..+...+... |++++|...+++.... .|+ ...|..+...|... |++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 8875 47778888888888888 9999999999988543 454 78888899999888 999
Q ss_pred HHHHHHHHhC-CCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHH
Q 008183 356 EDAERIAMAM-PFEP----DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKV 430 (575)
Q Consensus 356 ~~A~~~~~~m-~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 430 (575)
++|.+.|++. .+.| +...|..+..+|...|++++|...++++++++|.++.++..+..++...|++++|.+.+.+
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999887 3455 6899999999999999999999999999999999999999999999999999999876543
Q ss_pred H
Q 008183 431 M 431 (575)
Q Consensus 431 m 431 (575)
+
T Consensus 318 ~ 318 (474)
T 4abn_A 318 T 318 (474)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.7e-10 Score=102.24 Aligned_cols=163 Identities=17% Similarity=0.123 Sum_probs=106.7
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHH
Q 008183 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLI 346 (575)
Q Consensus 268 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li 346 (575)
...|..+...|.+.|++++|++.|++..+... -+..++..+..++.+.|++++|...+...... .|+ ...+..+.
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~ 80 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVL---DTTSAEAYYILG 80 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CchhHHHHHHHH
Confidence 34555566666666666666666666555422 24555666666666666666666666655322 232 44555556
Q ss_pred HHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHH
Q 008183 347 SAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEV 424 (575)
Q Consensus 347 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 424 (575)
..+...+++++|...+++. ...| +...+..+...+...|++++|.+.++++++.+|.++.+|..+..+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 6666667777777666655 2233 4667777777777788888888888888888887777888888888888888888
Q ss_pred HHHHHHHhhC
Q 008183 425 AEVRKVMKDR 434 (575)
Q Consensus 425 ~~~~~~m~~~ 434 (575)
.+.|++..+.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 8888776653
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.31 E-value=4.9e-11 Score=120.44 Aligned_cols=265 Identities=11% Similarity=-0.020 Sum_probs=148.4
Q ss_pred HHHHHhhchhhHHHHHHHHHHHHhhCCCCch----hHHHHHHHHHHhCCChHHHHHHHHhcCC---------CCcchHHH
Q 008183 105 LFKTCASLSHAFLFGLSLHSLSLKLSLHDKP----FCGSALVHFYSRFRSPDNAKKVFDEIRE---------RDVVCYGA 171 (575)
Q Consensus 105 ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~f~~m~~---------~~~~~~~~ 171 (575)
+-..+...| +++.|...++.+++.... +. .++..+...|...|++++|...|++..+ ....+|..
T Consensus 54 ~g~~~~~~g-~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 54 EGERLCNAG-DCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhC-cHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 333444555 666666666666655322 22 3455555556666666666665554422 12234555
Q ss_pred HHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHccC
Q 008183 172 MIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSG-LDRNVIVGTGLIDGYGKAG 250 (575)
Q Consensus 172 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g 250 (575)
+...|...|++++|+..|++..... .+.+ .+....++..+...|...|
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~l~~~~~~~g 180 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLA-------------------------------RQLGDRLSEGRALYNLGNVYHAKG 180 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHH-------------------------------HHhhchHHHHHHHHHHHHHHHHcC
Confidence 5555555666666655555543310 0000 0111234444444455555
Q ss_pred C-----------------HHHHHHHHhhhCC------C--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC--
Q 008183 251 I-----------------VSDARRVFDENLS------V--LNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGF-APD-- 302 (575)
Q Consensus 251 ~-----------------~~~A~~~~~~~~~------~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~-- 302 (575)
+ +++|.+.+++.+. . ....+|..+...|...|++++|+..|++..+... .++
T Consensus 181 ~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 260 (411)
T 4a1s_A 181 KHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA 260 (411)
T ss_dssp HHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred cccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH
Confidence 5 5555554444221 0 1123555566666666666666666666543210 011
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhccCChHHHHHHHHhC-------CCCC
Q 008183 303 --EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG----LEHYTCLISAMGRAGRLEDAERIAMAM-------PFEP 369 (575)
Q Consensus 303 --~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p 369 (575)
..++..+...+...|++++|...+++......-..+ ..++..+...|...|++++|...+++. +..+
T Consensus 261 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 340 (411)
T 4a1s_A 261 AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRI 340 (411)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChH
Confidence 235666777777778888887777766432111111 456777788888888888888887766 1111
Q ss_pred -CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 008183 370 -DAAVWRALLSFSAIHGKADMASKMGKRLIDINP 402 (575)
Q Consensus 370 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 402 (575)
...++..+...+...|++++|...++++.++.+
T Consensus 341 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 341 GEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 145777888889999999999999999988764
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.31 E-value=8.2e-11 Score=114.67 Aligned_cols=268 Identities=8% Similarity=-0.013 Sum_probs=145.2
Q ss_pred HHHHHhhchhhHHHHHHHHHHHHhhCCCCc---hhHHHHHHHHHHhCCChHHHHHHHHhcCC---------CCcchHHHH
Q 008183 105 LFKTCASLSHAFLFGLSLHSLSLKLSLHDK---PFCGSALVHFYSRFRSPDNAKKVFDEIRE---------RDVVCYGAM 172 (575)
Q Consensus 105 ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~f~~m~~---------~~~~~~~~l 172 (575)
.-..+...| +++.|...++.+++...... ..++..+...|...|++++|...|++..+ ....+|..+
T Consensus 11 ~g~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 11 EGERLCKSG-DCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHhc-cHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 334455666 77777777777777642211 24566667777777777777777765432 123456666
Q ss_pred HHHHHhCCCchHHHHHHHHhHHCCC-CcC----HHHHHHHHHHHHhccc--------------------HHHHHHHHHHH
Q 008183 173 IVGFAQNSRLVDSLSVFADMRSSDV-GST----MYCVSGALRAAAELAA--------------------MEQCRVIHGHA 227 (575)
Q Consensus 173 i~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~--------------------~~~a~~~~~~~ 227 (575)
...|...|++++|+..|++..+... .++ ..++..+...+...|+ ++.|...+...
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 6677777777777777766543110 011 1244445555555555 55555544443
Q ss_pred HHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCC
Q 008183 228 VVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR----GFAP 301 (575)
Q Consensus 228 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p 301 (575)
.+. +.. .. ......+..+...|...|++++|...+++..+. +..+
T Consensus 170 ~~~----------------------------~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 220 (338)
T 3ro2_A 170 LSL----------------------------VTA-LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA 220 (338)
T ss_dssp HHH----------------------------HHH-HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHH----------------------------HHh-cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChH
Confidence 321 000 00 001123444444555555555555555544322 1000
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhccCChHHHHHHHHhC-------CCCC
Q 008183 302 -DEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG----LEHYTCLISAMGRAGRLEDAERIAMAM-------PFEP 369 (575)
Q Consensus 302 -~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p 369 (575)
...++..+...+...|++++|..++++......-.++ ..++..+...|...|++++|...+++. +..+
T Consensus 221 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 300 (338)
T 3ro2_A 221 AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRI 300 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcH
Confidence 1224555556666666666666666655322111111 445666667777777777777776655 1111
Q ss_pred -CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 008183 370 -DAAVWRALLSFSAIHGKADMASKMGKRLIDINP 402 (575)
Q Consensus 370 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 402 (575)
...++..+...+...|++++|...++++.++.+
T Consensus 301 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 301 GEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 144667777888888888888888888877654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.6e-09 Score=104.78 Aligned_cols=184 Identities=11% Similarity=0.053 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC-CC-Chh-hHHHHHHHHHHcCChHHHHHHHHHH
Q 008183 218 EQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS-VL-NSI-AWNAMMAGYAQQGDQSTVLELFHLL 294 (575)
Q Consensus 218 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~-~~~-~~~~li~~~~~~g~~~~A~~l~~~m 294 (575)
++|..+++..++.-.+.+...+..++..+.+.|++++|.++|++++. .| +.. .|..+...+.+.|++++|..+|++.
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 66666666666521133455666777777777777777777776554 22 233 6777777777777777777777777
Q ss_pred HHcCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-C---CC
Q 008183 295 EMRGFAPDEYSFLAVLTALC-NAGLAGESEKWIERMKVRYKLEP-GLEHYTCLISAMGRAGRLEDAERIAMAM-P---FE 368 (575)
Q Consensus 295 ~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~---~~ 368 (575)
.+... ++...|........ ..|+.++|..+|+..... .| +...|..++..+.+.|++++|..+|++. . +.
T Consensus 161 ~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~ 236 (308)
T 2ond_A 161 REDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HhcCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCC
Confidence 66432 23333333322221 257777777777766443 23 3567777777777777777777777766 1 24
Q ss_pred C--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCc
Q 008183 369 P--DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDD 405 (575)
Q Consensus 369 p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 405 (575)
| ....|..++......|+.+.|..+++++.+..|.+.
T Consensus 237 p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence 4 356777777777777777777777777777777644
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.6e-10 Score=115.74 Aligned_cols=228 Identities=7% Similarity=-0.062 Sum_probs=135.9
Q ss_pred HHHHHHhCCCchHHHHHHHHhHHC----CCCc-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC--C----CCchhHHH
Q 008183 172 MIVGFAQNSRLVDSLSVFADMRSS----DVGS-TMYCVSGALRAAAELAAMEQCRVIHGHAVVSG--L----DRNVIVGT 240 (575)
Q Consensus 172 li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~----~~~~~~~~ 240 (575)
....+...|++++|+..|++.... +-.+ ...++..+...+...|+++.|...+....+.- . +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445567788888888888887653 1111 22456667777777788888777777765531 1 11134566
Q ss_pred HHHHHHHccCCHHHHHHHHhhhCC----CCC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHc----CC-CCCHHHHH
Q 008183 241 GLIDGYGKAGIVSDARRVFDENLS----VLN----SIAWNAMMAGYAQQGDQSTVLELFHLLEMR----GF-APDEYSFL 307 (575)
Q Consensus 241 ~li~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~-~p~~~t~~ 307 (575)
.+...|...|++++|.+.|++++. .++ ..+|+.+...|...|++++|+..|++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 677777777777777777776443 111 135666777777777777777777766542 22 22345566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC---hhHHHHHHHHHhccCC---hHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 008183 308 AVLTALCNAGLAGESEKWIERMKVRYKLEPG---LEHYTCLISAMGRAGR---LEDAERIAMAMPFEPD-AAVWRALLSF 380 (575)
Q Consensus 308 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~-~~~~~~ll~~ 380 (575)
.+...+...|++++|...+++...-..-..+ ...+..+...|...|+ +++|..++++.+..|+ ...+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 6667777777777777777655322111111 2224555666666666 6666666666643333 3345555566
Q ss_pred HHHcCChHHHHHHHHHHHh
Q 008183 381 SAIHGKADMASKMGKRLID 399 (575)
Q Consensus 381 ~~~~g~~~~a~~~~~~~~~ 399 (575)
|...|++++|...++++.+
T Consensus 349 y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 6666666666666665554
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.30 E-value=1.2e-10 Score=103.29 Aligned_cols=168 Identities=13% Similarity=0.044 Sum_probs=138.3
Q ss_pred CchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008183 234 RNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311 (575)
Q Consensus 234 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 311 (575)
.++.+|..+...|.+.|++++|.+.|++++. +.+..+|..+...|.+.|++++|+..+........ -+...+..+..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~ 81 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGS 81 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHH
Confidence 3567888888999999999999999987554 55777888888999999999999999988877643 35666777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChH
Q 008183 312 ALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKAD 388 (575)
Q Consensus 312 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~ 388 (575)
.+...++++.+...+...... .|+ ...+..+...|.+.|++++|.+.|++. .+.| +..+|..+..++...|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL---NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 888899999999999877433 444 678888899999999999999999887 4455 5888999999999999999
Q ss_pred HHHHHHHHHHhcCCCCc
Q 008183 389 MASKMGKRLIDINPYDD 405 (575)
Q Consensus 389 ~a~~~~~~~~~~~p~~~ 405 (575)
+|...++++++.+|.++
T Consensus 159 ~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 159 EAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHhCCccCH
Confidence 99999999999988653
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.29 E-value=1e-08 Score=108.81 Aligned_cols=416 Identities=10% Similarity=0.010 Sum_probs=279.2
Q ss_pred cHHHHHHHHHhhCCCcccHHHHHHHHhHcCCChHHHHHHHccCC---CCChhhHHHHHHHHhcCc----h--HHHHHHHH
Q 008183 17 DPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIP---SPNIVSWTALISAHSNSP----L--SLNIFLSM 87 (575)
Q Consensus 17 ~~~~~~~~~~~~g~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g----~--a~~~~~~m 87 (575)
.-...+...++..+.|..+|..+++.+.+.+.++.|+.+|+++. +.+...|..-+..-.+.+ . +.++|++.
T Consensus 50 d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRa 129 (679)
T 4e6h_A 50 DVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARC 129 (679)
T ss_dssp CHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Confidence 33444555555556789999999999999999999999999886 445667887777655543 2 89999998
Q ss_pred hhCCCCCcCCChhhHHHHHHHHhhch-------hhHHHHHHHHHHHHhh-CC-CC-chhHHHHHHHHHHh---------C
Q 008183 88 LRHPTLSFLPNQRTLASLFKTCASLS-------HAFLFGLSLHSLSLKL-SL-HD-KPFCGSALVHFYSR---------F 148 (575)
Q Consensus 88 ~~~~~~~~~p~~~t~~~ll~~~~~~~-------~~~~~a~~~~~~~~~~-g~-~~-~~~~~~~li~~~~~---------~ 148 (575)
.... +..|+...|..-+.-..+.+ +..+..+++|+.++.. |. .+ +..+|...+..... .
T Consensus 130 l~~~--~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq 207 (679)
T 4e6h_A 130 LSKE--LGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQ 207 (679)
T ss_dssp TCSS--SCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHH
T ss_pred HHhc--CCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHH
Confidence 8752 01388887777665544432 0235566888887664 65 44 45688888876543 3
Q ss_pred CChHHHHHHHHhcCC-CCc---chHH---HHHHHHH----------hCCCchHHHHHHHHhHH--CCCC-----------
Q 008183 149 RSPDNAKKVFDEIRE-RDV---VCYG---AMIVGFA----------QNSRLVDSLSVFADMRS--SDVG----------- 198 (575)
Q Consensus 149 g~~~~A~~~f~~m~~-~~~---~~~~---~li~~~~----------~~g~~~~A~~~~~~m~~--~g~~----------- 198 (575)
++++.+.++|+.... |.. .+|. .+...+- ...+++.|...+.++.. .++.
T Consensus 208 ~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~ 287 (679)
T 4e6h_A 208 QRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQAT 287 (679)
T ss_dssp HHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCC
T ss_pred hHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccch
Confidence 457889999998765 211 2232 2222210 01123334455544321 1111
Q ss_pred ----c-----CH---HHHHHHHHHHHhcc-------cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHH-HH
Q 008183 199 ----S-----TM---YCVSGALRAAAELA-------AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR-RV 258 (575)
Q Consensus 199 ----p-----~~---~t~~~ll~~~~~~~-------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~-~~ 258 (575)
| +. ..|...+.---..+ ..+.+..+|++.+.. ++-+..+|-..+..+...|+.++|. ++
T Consensus 288 ~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~i 366 (679)
T 4e6h_A 288 ESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKY 366 (679)
T ss_dssp TTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHH
T ss_pred hccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 1 11 22333333222211 123455678888776 4567888888888888899999996 99
Q ss_pred HhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcC---------CCCC------------HHHHHHHHHHHHh
Q 008183 259 FDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRG---------FAPD------------EYSFLAVLTALCN 315 (575)
Q Consensus 259 ~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---------~~p~------------~~t~~~ll~a~~~ 315 (575)
|++++. +.+...|-..+...-+.|++++|.++|+.+.... -.|+ ...|...+....+
T Consensus 367 l~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR 446 (679)
T 4e6h_A 367 LKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKR 446 (679)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHH
Confidence 988655 4566678888888889999999999999987641 0132 2357777777778
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhcc-CChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHH
Q 008183 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRA-GRLEDAERIAMAM--PFEPDAAVWRALLSFSAIHGKADMASK 392 (575)
Q Consensus 316 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~ 392 (575)
.|.++.|+.+|.......+ .+....|...+.+--+. ++.+.|.++|+.. ....+...|...+.-....|+.+.|..
T Consensus 447 ~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~ 525 (679)
T 4e6h_A 447 IQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKS 525 (679)
T ss_dssp HHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHH
Confidence 8999999999998854311 12234444444444444 4589999999887 223357778888888888999999999
Q ss_pred HHHHHHhcCCC---CchhHHHHHHHHHhCCCchHHHHHHHHHhhCCC
Q 008183 393 MGKRLIDINPY---DDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436 (575)
Q Consensus 393 ~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 436 (575)
+|++++...|+ ....|...+..-.+.|+.+.+.++.+++.+.-.
T Consensus 526 lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 526 LFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999998773 345788889999999999999999999987643
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=2e-11 Score=117.97 Aligned_cols=164 Identities=11% Similarity=0.054 Sum_probs=101.5
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHhHHC-------CCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHh------CC-
Q 008183 167 VCYGAMIVGFAQNSRLVDSLSVFADMRSS-------DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVS------GL- 232 (575)
Q Consensus 167 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------g~- 232 (575)
.+|..+...|...|++++|+.+|+++.+. ........+..+...+...|++++|...+..+++. +-
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34566666666666666666666666542 11222344555666666666666666666665543 21
Q ss_pred CCchhHHHHHHHHHHccCCHHHHHHHHhhhCCC----------CChhhHHHHHHHHHHcCChHHHHHHHHHHHHc-----
Q 008183 233 DRNVIVGTGLIDGYGKAGIVSDARRVFDENLSV----------LNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR----- 297 (575)
Q Consensus 233 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----- 297 (575)
+....++..+...|...|++++|.+.|++++.. .....|..+...|...|++++|++.|++..+.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 223566777888888888888888888764331 12345666677777777777777777776553
Q ss_pred -CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008183 298 -GFAPD-EYSFLAVLTALCNAGLAGESEKWIERMK 330 (575)
Q Consensus 298 -g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 330 (575)
+..|+ ..++..+...+...|++++|..++++..
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 222 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL 222 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 21222 3456666667777777777777777664
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.3e-10 Score=116.38 Aligned_cols=226 Identities=5% Similarity=-0.071 Sum_probs=171.3
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHh----CCCC-chhHHHHHHHHHHccCCHHHHHHHHhhhCC----CCC-----hhhHH
Q 008183 207 ALRAAAELAAMEQCRVIHGHAVVS----GLDR-NVIVGTGLIDGYGKAGIVSDARRVFDENLS----VLN-----SIAWN 272 (575)
Q Consensus 207 ll~~~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~-----~~~~~ 272 (575)
....+...|++++|...+....+. +-++ ...++..+...|...|++++|.+.+++++. .++ ..+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455667889999999999999764 2112 346788899999999999999999987554 122 35788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---cCCCCC-hhHHH
Q 008183 273 AMMAGYAQQGDQSTVLELFHLLEMRGF-APD----EYSFLAVLTALCNAGLAGESEKWIERMKVR---YKLEPG-LEHYT 343 (575)
Q Consensus 273 ~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~~~p~-~~~~~ 343 (575)
.+...|...|++++|++.|++..+... .++ ..++..+...+...|++++|...+++...- .+..|+ ..++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 889999999999999999998865311 112 247888889999999999999999887431 122133 67788
Q ss_pred HHHHHHhccCChHHHHHHHHhC-CC-----CCC-HHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCCCchhHHHHHH
Q 008183 344 CLISAMGRAGRLEDAERIAMAM-PF-----EPD-AAVWRALLSFSAIHGK---ADMASKMGKRLIDINPYDDSAYVIVAN 413 (575)
Q Consensus 344 ~li~~~~~~g~~~~A~~~~~~m-~~-----~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~ 413 (575)
.+...|.+.|++++|...+++. .+ .|. ...+..+...+...|+ .++|..++++. ...|....++..+..
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 9999999999999999999876 11 222 3335667777888888 77777777765 222334457888999
Q ss_pred HHHhCCCchHHHHHHHHHhh
Q 008183 414 VLSGVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 414 ~~~~~g~~~~a~~~~~~m~~ 433 (575)
.|...|++++|...+++..+
T Consensus 348 ~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999998764
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.24 E-value=3.3e-09 Score=102.57 Aligned_cols=212 Identities=12% Similarity=0.007 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHhhCCCCchhHHHHHHHHHH-------hCCCh-------HHHHHHHHhcCC---C-CcchHHHHHHHHHh
Q 008183 117 LFGLSLHSLSLKLSLHDKPFCGSALVHFYS-------RFRSP-------DNAKKVFDEIRE---R-DVVCYGAMIVGFAQ 178 (575)
Q Consensus 117 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~f~~m~~---~-~~~~~~~li~~~~~ 178 (575)
+.+..+++.+++.. +.++.+|..+...+. +.|++ ++|..+|++..+ | +...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45666777776654 456667776666665 35775 788888887543 3 44578888888888
Q ss_pred CCCchHHHHHHHHhHHCCCCcCH-H-HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH-ccCCHHHH
Q 008183 179 NSRLVDSLSVFADMRSSDVGSTM-Y-CVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYG-KAGIVSDA 255 (575)
Q Consensus 179 ~g~~~~A~~~~~~m~~~g~~p~~-~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~-~~g~~~~A 255 (575)
.|++++|.++|++..+ +.|+. . .|..+...+.+.|++++|..+|+..++.. +.+...|........ ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 8888888888888876 34532 2 67777777777888888888888887654 334444444433322 35888888
Q ss_pred HHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008183 256 RRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRG-FAP--DEYSFLAVLTALCNAGLAGESEKWIERMK 330 (575)
Q Consensus 256 ~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 330 (575)
.++|+.++. +.+...|..++..+.+.|++++|..+|++..... +.| ....+..++......|+.+.|..++.++.
T Consensus 189 ~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 189 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888877544 4566777777777888888888888888877753 344 35566667777777788888888877774
Q ss_pred Hh
Q 008183 331 VR 332 (575)
Q Consensus 331 ~~ 332 (575)
..
T Consensus 269 ~~ 270 (308)
T 2ond_A 269 TA 270 (308)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.24 E-value=6.1e-09 Score=103.57 Aligned_cols=259 Identities=7% Similarity=-0.056 Sum_probs=154.8
Q ss_pred HHHhCCCchHHHHHHHHhHHCCCCcCHH----HHHHHHHHHHhcccHHHHHHHHHHHHHhCC-CCc----hhHHHHHHHH
Q 008183 175 GFAQNSRLVDSLSVFADMRSSDVGSTMY----CVSGALRAAAELAAMEQCRVIHGHAVVSGL-DRN----VIVGTGLIDG 245 (575)
Q Consensus 175 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~----~~~~~~li~~ 245 (575)
.+...|++++|...+++........+.. .+..+...+...|+++.|...+....+..- ..+ ...+..+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 3445566666666666655432111221 233444455556666666666665544210 011 1234556666
Q ss_pred HHccCCHHHHHHHHhhhCC------C---C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCC--C--CHHHHHHHHH
Q 008183 246 YGKAGIVSDARRVFDENLS------V---L-NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFA--P--DEYSFLAVLT 311 (575)
Q Consensus 246 ~~~~g~~~~A~~~~~~~~~------~---~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p--~~~t~~~ll~ 311 (575)
|...|++++|.+.+++.+. . + ....+..+...|...|++++|...+++....... | ...++..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 7777777777777765332 1 1 1234555666777788888888888776654221 1 2345666777
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCCCChhHHH-----HHHHHHhccCChHHHHHHHHhCC-CCCC-----HHHHHHHHHH
Q 008183 312 ALCNAGLAGESEKWIERMKVRYKLEPGLEHYT-----CLISAMGRAGRLEDAERIAMAMP-FEPD-----AAVWRALLSF 380 (575)
Q Consensus 312 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~-~~p~-----~~~~~~ll~~ 380 (575)
.+...|++++|...+++......-......+. ..+..+...|++++|...+++.- ..|. ...+..+...
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence 77788888888888877643211111111121 23344668888888888888772 1221 3356677788
Q ss_pred HHHcCChHHHHHHHHHHHhcCCC-----C-chhHHHHHHHHHhCCCchHHHHHHHHHhh
Q 008183 381 SAIHGKADMASKMGKRLIDINPY-----D-DSAYVIVANVLSGVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 381 ~~~~g~~~~a~~~~~~~~~~~p~-----~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 433 (575)
+...|++++|...++++.+..+. . ..++..+..+|...|+.++|...+++...
T Consensus 263 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 88889999998888887764321 1 12566778888899999999988887654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.7e-10 Score=123.86 Aligned_cols=161 Identities=16% Similarity=0.128 Sum_probs=122.6
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHH
Q 008183 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLI 346 (575)
Q Consensus 268 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li 346 (575)
..+|+.|...|.+.|++++|++.|++..+... -+..++..+..++.+.|++++|...|++... +.|+ ...|..+.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~nLg 84 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHH
Confidence 45666677777777777777777777666421 2456677777777777777777777776642 3455 66777777
Q ss_pred HHHhccCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHH
Q 008183 347 SAMGRAGRLEDAERIAMAM-PFEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEV 424 (575)
Q Consensus 347 ~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 424 (575)
..|.+.|++++|.+.|++. .+.|+ ...|..+..++...|++++|+..++++++++|.++.++..|+.+|...|+|++|
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 8888888888888887776 44564 778888888999999999999999999999998888999999999999999998
Q ss_pred HHHHHHHh
Q 008183 425 AEVRKVMK 432 (575)
Q Consensus 425 ~~~~~~m~ 432 (575)
.+.+++..
T Consensus 165 ~~~~~kal 172 (723)
T 4gyw_A 165 DERMKKLV 172 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887664
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.19 E-value=5.9e-10 Score=111.30 Aligned_cols=222 Identities=8% Similarity=-0.077 Sum_probs=123.2
Q ss_pred HHHhcccHHHHHHHHHHHHHhCC-CC----chhHHHHHHHHHHccCCHHHHHHHHhhhCC----CCC-----hhhHHHHH
Q 008183 210 AAAELAAMEQCRVIHGHAVVSGL-DR----NVIVGTGLIDGYGKAGIVSDARRVFDENLS----VLN-----SIAWNAMM 275 (575)
Q Consensus 210 ~~~~~~~~~~a~~~~~~~~~~g~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~-----~~~~~~li 275 (575)
.+...|++++|...+..+.+..- .+ ...++..+...|...|+++.|...+++++. .++ ..+++.+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 34456666666666666654310 01 234556666666677776666666655332 111 23556666
Q ss_pred HHHHHcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc---CCCCChhHHHHHHH
Q 008183 276 AGYAQQGDQSTVLELFHLLEMR----GFAP-DEYSFLAVLTALCNAGLAGESEKWIERMKVRY---KLEPGLEHYTCLIS 347 (575)
Q Consensus 276 ~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~~~~~~~li~ 347 (575)
..|...|++++|++.|++..+. +..+ ...++..+...+...|++++|...+.+...-. +-+....++..+..
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 6677777777777776665432 1111 12355566666677777777777776653310 11112455666667
Q ss_pred HHhccCChHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 008183 348 AMGRAGRLEDAERIAMAM----PF--EPD-AAVWRALLSFSAIHGK---ADMASKMGKRLIDINPYDDSAYVIVANVLSG 417 (575)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m----~~--~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 417 (575)
.|.+.|++++|...+++. +. .|. ...+..+...+...++ +++|...+++.. ..|.....+..+...|..
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~-~~~~~~~~~~~la~~y~~ 348 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN-LHAYIEACARSAAAVFES 348 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC-ChhHHHHHHHHHHHHHHH
Confidence 777777777777776655 11 122 3334444445555555 555555555421 112233456667777777
Q ss_pred CCCchHHHHHHHHHh
Q 008183 418 VGRWDEVAEVRKVMK 432 (575)
Q Consensus 418 ~g~~~~a~~~~~~m~ 432 (575)
.|++++|...+++..
T Consensus 349 ~g~~~~A~~~~~~al 363 (378)
T 3q15_A 349 SCHFEQAAAFYRKVL 363 (378)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 777777777776654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.18 E-value=4.8e-10 Score=115.41 Aligned_cols=195 Identities=10% Similarity=-0.014 Sum_probs=127.9
Q ss_pred CcchHHHHHHHHHhCCCc-hHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 008183 165 DVVCYGAMIVGFAQNSRL-VDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLI 243 (575)
Q Consensus 165 ~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 243 (575)
+...|..+...|...|++ ++|++.|++..+.. +-+...+..+..++...|++++|...++..++. .|+...+..+.
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg 177 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLS 177 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHH
Confidence 344555555555566666 66666666555431 122445555566666666666666666666554 34455566666
Q ss_pred HHHHcc---------CCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHc--------CChHHHHHHHHHHHHcCCC--CC
Q 008183 244 DGYGKA---------GIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQ--------GDQSTVLELFHLLEMRGFA--PD 302 (575)
Q Consensus 244 ~~~~~~---------g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~--------g~~~~A~~l~~~m~~~g~~--p~ 302 (575)
..|... |++++|.+.|++++. +.+...|..+...|... |++++|++.|++..+.... -+
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 257 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSN 257 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGC
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccC
Confidence 666666 677777777766443 44566677777777776 7788888888877765220 36
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC
Q 008183 303 EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM 365 (575)
Q Consensus 303 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (575)
...+..+..++...|++++|...|++.... .|+ ...+..+...+...|++++|.+.+.++
T Consensus 258 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 258 PDLHLNRATLHKYEESYGEALEGFSQAAAL---DPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 777888888888888888888888877433 454 567778888888888888888877766
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.2e-10 Score=112.34 Aligned_cols=246 Identities=11% Similarity=0.018 Sum_probs=152.1
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHhcCC--------C---CcchHHHHHHHHHhCCCchHHHHHHHHhHHC------CC
Q 008183 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRE--------R---DVVCYGAMIVGFAQNSRLVDSLSVFADMRSS------DV 197 (575)
Q Consensus 135 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~ 197 (575)
..++..+...|...|++++|..+|+++.+ . ...+|..+...|...|++++|+..|++.... +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 44566677777777777777777776543 1 2345777777888888888888888777653 22
Q ss_pred Cc-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHh------CC-CCchhHHHHHHHHHHccCCHHHHHHHHhhhCCC----
Q 008183 198 GS-TMYCVSGALRAAAELAAMEQCRVIHGHAVVS------GL-DRNVIVGTGLIDGYGKAGIVSDARRVFDENLSV---- 265 (575)
Q Consensus 198 ~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---- 265 (575)
.| ...++..+...+...|++++|...+..+.+. +. +.....+..+...|...|++++|.+.|++++..
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 23 3456777778888888888888888887764 22 224567888999999999999999999874431
Q ss_pred --C----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCh
Q 008183 266 --L----NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGL 339 (575)
Q Consensus 266 --~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 339 (575)
+ ...++..+...|...|++++|...|+++.+... + ..+..+- ....... ...
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--~-~~~~~~~---~~~~~~~----------------~~~ 244 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAH--E-REFGSVD---DENKPIW----------------MHA 244 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--H-HHHC---------CCHH----------------HHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--H-hcCCCCC---cchHHHH----------------HHH
Confidence 1 235688889999999999999999999876310 0 0000000 0000000 001
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 008183 340 EHYTCLISAMGRAGRLEDAERIAMAMP-FEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINP 402 (575)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 402 (575)
..+..+...+...+.+.+|...++... ..| +..+|..+...|...|++++|...+++++++.|
T Consensus 245 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 245 EEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp HHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 112222333444555555666665552 233 356677777888888888888888887776654
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.16 E-value=2.5e-09 Score=94.14 Aligned_cols=161 Identities=14% Similarity=0.022 Sum_probs=90.5
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008183 237 IVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314 (575)
Q Consensus 237 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 314 (575)
..+..+...|...|++++|.+.|++++. +.+...|..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 3455566667777777777777776443 3345566666666666777777776666665542 224455555555556
Q ss_pred hcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 008183 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMG 394 (575)
Q Consensus 315 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 394 (575)
..|++++|..+++..... .| .+...|..+...+...|++++|...+
T Consensus 88 ~~~~~~~A~~~~~~~~~~---~~-------------------------------~~~~~~~~~a~~~~~~~~~~~A~~~~ 133 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA---NP-------------------------------INFNVRFRLGVALDNLGRFDEAIDSF 133 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH---CT-------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc---Cc-------------------------------HhHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 666666666666555322 11 23344444445555555555555555
Q ss_pred HHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHh
Q 008183 395 KRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432 (575)
Q Consensus 395 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 432 (575)
+++.+..|.++.++..++..|...|++++|...+++..
T Consensus 134 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 171 (186)
T 3as5_A 134 KIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKAN 171 (186)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.16 E-value=1.6e-09 Score=95.49 Aligned_cols=129 Identities=16% Similarity=0.150 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 008183 304 YSFLAVLTALCNAGLAGESEKWIERMKVRYKLEP-GLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSF 380 (575)
Q Consensus 304 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~ 380 (575)
..+..+...+...|++++|...++++. ...| +...+..+...+...|++++|...+++. ...| +...|..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVY---DADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTC---CTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHH---HhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 344555566666777777777776552 2233 3566777777777777888877777766 2233 57888889999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCC
Q 008183 381 SAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435 (575)
Q Consensus 381 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 435 (575)
+...|++++|...++++.+..|.++..+..++.+|...|++++|...+++..+..
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 140 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR 140 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999987654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.14 E-value=3e-09 Score=97.81 Aligned_cols=205 Identities=8% Similarity=-0.020 Sum_probs=151.7
Q ss_pred cCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHH
Q 008183 199 STMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMA 276 (575)
Q Consensus 199 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~ 276 (575)
.|+..+......+...|++++|...+...++..-+++...+..+...|.+.|++++|.+.|++.+. +.+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 356778888888899999999999999998886436777777789999999999999999988554 445677888899
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC---hhHHHHHH
Q 008183 277 GYAQQGDQSTVLELFHLLEMRGFAPDE-------YSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG---LEHYTCLI 346 (575)
Q Consensus 277 ~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li 346 (575)
.|...|++++|+..|++..+.... +. ..|..+...+...|++++|...|++.. .+.|+ ...+..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHHHH
Confidence 999999999999999998875322 33 457777777888899999999998774 34565 46677777
Q ss_pred HHHhccCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 008183 347 SAMGRAGRLEDAERIAMAM-P-FEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANV 414 (575)
Q Consensus 347 ~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 414 (575)
..|...|+. .++++ . ...+...|..+.. ...+.+++|...++++++++|.++.+...+..+
T Consensus 161 ~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 161 VLFYNNGAD-----VLRKATPLASSNKEKYASEKA--KADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHH-----HHHHHGGGTTTCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHhcccCCHHHHHHHHH--HHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 777665543 22222 1 1223444444432 345668999999999999999988766655544
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.1e-08 Score=100.01 Aligned_cols=229 Identities=11% Similarity=0.027 Sum_probs=175.3
Q ss_pred HHHHHHhCCCchHHHHHHHHhHHCCC-CcC----HHHHHHHHHHHHhcccHHHHHHHHHHHHHhC--C---CC-chhHHH
Q 008183 172 MIVGFAQNSRLVDSLSVFADMRSSDV-GST----MYCVSGALRAAAELAAMEQCRVIHGHAVVSG--L---DR-NVIVGT 240 (575)
Q Consensus 172 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~---~~-~~~~~~ 240 (575)
....+...|++++|+..|++....-. .+| ..++..+...+...|+++.|...+....+.- . .+ ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 44456789999999999999865311 122 3467778888899999999999998886641 1 11 245778
Q ss_pred HHHHHHHccCCHHHHHHHHhhhCC----CCC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCCHHHHHH
Q 008183 241 GLIDGYGKAGIVSDARRVFDENLS----VLN----SIAWNAMMAGYAQQGDQSTVLELFHLLEMR----GFAPDEYSFLA 308 (575)
Q Consensus 241 ~li~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~~t~~~ 308 (575)
.+...|...|++++|.+.|++++. .++ ..+++.+...|...|++++|+..|++..+. +.+....++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 889999999999999999987554 122 346788899999999999999999988761 22333678888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCCCC---hhHHHHHHHHHhccCC---hHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 008183 309 VLTALCNAGLAGESEKWIERMKVRYKLEPG---LEHYTCLISAMGRAGR---LEDAERIAMAMPFEPD-AAVWRALLSFS 381 (575)
Q Consensus 309 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~-~~~~~~ll~~~ 381 (575)
+...+.+.|++++|..++++......-.++ ...+..+...|...|+ +++|...+++.+..|+ ...+..+...|
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y 346 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVF 346 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence 999999999999999999988544322222 3456677778888888 9999999999765554 45677888999
Q ss_pred HHcCChHHHHHHHHHHHhc
Q 008183 382 AIHGKADMASKMGKRLIDI 400 (575)
Q Consensus 382 ~~~g~~~~a~~~~~~~~~~ 400 (575)
...|++++|...++++.+.
T Consensus 347 ~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 9999999999999988753
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.08 E-value=2.2e-08 Score=99.47 Aligned_cols=255 Identities=11% Similarity=0.020 Sum_probs=149.4
Q ss_pred HHHhCCChHHHHHHHHhcCC--C--Cc----chHHHHHHHHHhCCCchHHHHHHHHhHHCCC-CcCH----HHHHHHHHH
Q 008183 144 FYSRFRSPDNAKKVFDEIRE--R--DV----VCYGAMIVGFAQNSRLVDSLSVFADMRSSDV-GSTM----YCVSGALRA 210 (575)
Q Consensus 144 ~~~~~g~~~~A~~~f~~m~~--~--~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~t~~~ll~~ 210 (575)
.+...|++++|...+++... + +. .+++.+...+...|++++|.+.+++...... .++. .++..+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 34455566666555554321 1 11 1344445555666666666666665543100 0111 223445555
Q ss_pred HHhcccHHHHHHHHHHHHHh----CCC--C-chhHHHHHHHHHHccCCHHHHHHHHhhhCC-CC------ChhhHHHHHH
Q 008183 211 AAELAAMEQCRVIHGHAVVS----GLD--R-NVIVGTGLIDGYGKAGIVSDARRVFDENLS-VL------NSIAWNAMMA 276 (575)
Q Consensus 211 ~~~~~~~~~a~~~~~~~~~~----g~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~------~~~~~~~li~ 276 (575)
+...|++++|...++..++. +.. | ....+..+...|...|++++|.+.+++.+. .+ ...+|..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 66667777776666665442 211 2 234555667777778888888877776433 11 1245666777
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCC--HHHHH----HHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-----hhHHHHH
Q 008183 277 GYAQQGDQSTVLELFHLLEMRGFAPD--EYSFL----AVLTALCNAGLAGESEKWIERMKVRYKLEPG-----LEHYTCL 345 (575)
Q Consensus 277 ~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~----~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~l 345 (575)
.+...|++++|...+++.......++ ..... ..+..+...|++++|...+.... . ..|. ...+..+
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~-~--~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA-K--PEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSC-C--CCCTTCGGGHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCC-C--CCCCcchhhHHHHHHH
Confidence 78888888888888887765321111 11111 22334667888888888887663 2 2221 2245667
Q ss_pred HHHHhccCChHHHHHHHHhC-------CCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 008183 346 ISAMGRAGRLEDAERIAMAM-------PFEPDA-AVWRALLSFSAIHGKADMASKMGKRLIDIN 401 (575)
Q Consensus 346 i~~~~~~g~~~~A~~~~~~m-------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 401 (575)
...+...|++++|...+++. +..++. ..+..+..++...|+.++|...+++..+..
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 323 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA 323 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 77888889988888887765 111122 356666777888899999999888887654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.07 E-value=1.5e-07 Score=99.86 Aligned_cols=386 Identities=8% Similarity=-0.004 Sum_probs=262.0
Q ss_pred CCCCccHHHHHHHHHhhCCCcccHHHHHHHHhHcCCC---hHHHHHHHccCC--C---CChhhHHHHHHHHhcC-----c
Q 008183 12 QNTSTDPRIVHARALKSSQADRSIYNNLITNYSKSNL---LSYSLRLFNHIP--S---PNIVSWTALISAHSNS-----P 78 (575)
Q Consensus 12 ~~~~~~~~~~~~~~~~~g~~~~~~~~~li~~~~~~g~---~~~A~~~f~~m~--~---~~~~~~~~li~~~~~~-----g 78 (575)
.+....++.+++++++.-+.+...|...+..-.+.|+ ++.+..+|++.. . |++..|..-+.-..+. +
T Consensus 79 ~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~ 158 (679)
T 4e6h_A 79 LKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITG 158 (679)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTT
T ss_pred cCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccc
Confidence 4567789999999998855777889999999999999 999999998764 3 8888888766543221 1
Q ss_pred -h-----HHHHHHHHhh-CCCCCc-CCC-hhhHHHHHHHHh---------hchhhHHHHHHHHHHHHhhCCCCchhHHHH
Q 008183 79 -L-----SLNIFLSMLR-HPTLSF-LPN-QRTLASLFKTCA---------SLSHAFLFGLSLHSLSLKLSLHDKPFCGSA 140 (575)
Q Consensus 79 -~-----a~~~~~~m~~-~~~~~~-~p~-~~t~~~ll~~~~---------~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 140 (575)
. ..++|+.... .| . .|+ ...|...+.-.. ..+ .++.++.++..++......-..+|..
T Consensus 159 ~~~~r~~vr~~FErAl~~vG---~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~-~~~~~R~iy~raL~iP~~~~~~~w~~ 234 (679)
T 4e6h_A 159 GEEARNIVIQAFQVVVDKCA---IFEPKSIQFWNEYLHFLEHWKPVNKFEEQQ-RVQYIRKLYKTLLCQPMDCLESMWQR 234 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHTT---TTCSSCHHHHHHHHHHHHTCCCCSHHHHHH-HHHHHHHHHHHHTTSCCSSHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhC---cccccchHHHHHHHHHHHhccccCcHHHHh-HHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 1 4577877654 34 4 454 345555554332 234 67889999999886322222233332
Q ss_pred HHHHHHh-------------CCChHHHHHHHHhc-------CC--C--------------C------cchHHHHHHHHHh
Q 008183 141 LVHFYSR-------------FRSPDNAKKVFDEI-------RE--R--------------D------VVCYGAMIVGFAQ 178 (575)
Q Consensus 141 li~~~~~-------------~g~~~~A~~~f~~m-------~~--~--------------~------~~~~~~li~~~~~ 178 (575)
....--. ..+++.|...+.++ .. | + ...|...+.---.
T Consensus 235 Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~ 314 (679)
T 4e6h_A 235 YTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESD 314 (679)
T ss_dssp HHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHh
Confidence 2221111 11234455555431 10 0 0 1245555554333
Q ss_pred CCC-------chHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHH-HHHHHHHHhCCCCchhHHHHHHHHHHccC
Q 008183 179 NSR-------LVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCR-VIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250 (575)
Q Consensus 179 ~g~-------~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~-~~~~~~~~~g~~~~~~~~~~li~~~~~~g 250 (575)
++. .+.+..+|++.... ..-+...|...+.-+...|+.+.|. .+++..+.. .+.+...+-..+...-+.|
T Consensus 315 ~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~ 392 (679)
T 4e6h_A 315 NKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNT 392 (679)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTT
T ss_pred CCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhC
Confidence 321 23456678887764 3346667777777777888888896 999999875 4566777888999999999
Q ss_pred CHHHHHHHHhhhCCC------------CC------------hhhHHHHHHHHHHcCChHHHHHHHHHHHHc-C-CCCCHH
Q 008183 251 IVSDARRVFDENLSV------------LN------------SIAWNAMMAGYAQQGDQSTVLELFHLLEMR-G-FAPDEY 304 (575)
Q Consensus 251 ~~~~A~~~~~~~~~~------------~~------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g-~~p~~~ 304 (575)
+++.|.++|+.++.. |+ ...|-..+....+.|..+.|..+|.+..+. + ..+...
T Consensus 393 ~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~ly 472 (679)
T 4e6h_A 393 KIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIY 472 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHH
Confidence 999999999985542 32 235888888888899999999999999876 3 223333
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC----CHHHHHHHHH
Q 008183 305 SFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP----DAAVWRALLS 379 (575)
Q Consensus 305 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p----~~~~~~~ll~ 379 (575)
...+.+.- ...++.+.|..+|+.....+ .-+...+...++.....|+.+.|..+|++. ...| ....|...+.
T Consensus 473 i~~A~lE~-~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~ 549 (679)
T 4e6h_A 473 LENAYIEY-HISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIF 549 (679)
T ss_dssp HHHHHHHH-TTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHH
T ss_pred HHHHHHHH-HhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 33333332 12356899999999886653 334667788888888999999999999987 2233 3578999999
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCCch
Q 008183 380 FSAIHGKADMASKMGKRLIDINPYDDS 406 (575)
Q Consensus 380 ~~~~~g~~~~a~~~~~~~~~~~p~~~~ 406 (575)
--.+.|+.+.+..+.+++.+..|+++.
T Consensus 550 fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 550 FESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp HHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence 999999999999999999999997753
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1.7e-09 Score=116.18 Aligned_cols=162 Identities=15% Similarity=0.092 Sum_probs=124.3
Q ss_pred chhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008183 235 NVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312 (575)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 312 (575)
+...++.|...|.+.|++++|.+.|+++++ +.+..+|+.+...|.+.|++++|++.|++..+... -+...|..+..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nLg~~ 86 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 456777788888888888888888877554 44567788888888888888888888888777532 246778888888
Q ss_pred HHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHH
Q 008183 313 LCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM-PFEPD-AAVWRALLSFSAIHGKADM 389 (575)
Q Consensus 313 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~ 389 (575)
+...|++++|.+.|++..+ +.|+ ...|+.+...|.+.|++++|.+.|++. .+.|+ ...|..|...+...|++++
T Consensus 87 l~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 8888888888888887743 3565 677888888888888888888888776 45664 7788888888888888888
Q ss_pred HHHHHHHHHhc
Q 008183 390 ASKMGKRLIDI 400 (575)
Q Consensus 390 a~~~~~~~~~~ 400 (575)
|.+.+++++++
T Consensus 164 A~~~~~kal~l 174 (723)
T 4gyw_A 164 YDERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88888887754
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.05 E-value=5.2e-09 Score=96.14 Aligned_cols=190 Identities=9% Similarity=-0.019 Sum_probs=128.1
Q ss_pred CchhHHHHHHHHHHccCCHHHHHHHHhhhCC--C-CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008183 234 RNVIVGTGLIDGYGKAGIVSDARRVFDENLS--V-LNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL 310 (575)
Q Consensus 234 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 310 (575)
.|+..+..+...|.+.|++++|.+.|++.+. + ++...|..+..+|...|++++|+..|++..+.... +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 3556777777788888888888888876444 3 56666666777788888888888888887764322 445677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhcCCCCC-h-------hHHHHHHHHHhccCChHHHHHHHHhC-CCCCC---HHHHHHHH
Q 008183 311 TALCNAGLAGESEKWIERMKVRYKLEPG-L-------EHYTCLISAMGRAGRLEDAERIAMAM-PFEPD---AAVWRALL 378 (575)
Q Consensus 311 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~-------~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~ll 378 (575)
..+...|++++|...+++.... .|+ . ..|..+...+...|++++|.+.|++. .+.|+ ...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 7778888888888888777433 343 3 34666667777778888888887776 45564 45566666
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 379 SFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 379 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
..+.. .+...++++..+.+.+...|..+. ....+.+++|...+++..+.
T Consensus 161 ~~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 161 VLFYN-----NGADVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHH-----HHHHHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 66543 344556666666655544444333 33445578999999888764
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.02 E-value=3.4e-09 Score=100.40 Aligned_cols=130 Identities=12% Similarity=0.024 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHh------CC-CCchhHHHHHHHHHHccCCHHHHHHHHhhhCCC------C-
Q 008183 201 MYCVSGALRAAAELAAMEQCRVIHGHAVVS------GL-DRNVIVGTGLIDGYGKAGIVSDARRVFDENLSV------L- 266 (575)
Q Consensus 201 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~- 266 (575)
..++..+...+...|++++|...+..+++. +- +....++..+...|...|++++|.+.|++++.. +
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 345555666666666666666666665543 21 223556777788888888888888887764331 1
Q ss_pred ---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008183 267 ---NSIAWNAMMAGYAQQGDQSTVLELFHLLEMR------GFAP-DEYSFLAVLTALCNAGLAGESEKWIERMK 330 (575)
Q Consensus 267 ---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 330 (575)
...+|..+...|...|++++|+..|++..+. +-.| ...++..+...+...|++++|..++++..
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2345666667777777777777777776553 1122 23456666666677777777777776663
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.00 E-value=2.2e-08 Score=95.85 Aligned_cols=216 Identities=8% Similarity=-0.068 Sum_probs=103.9
Q ss_pred ChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHC----CCCcC-HHHHHHHHHHHHhcccHHHHHHHH
Q 008183 150 SPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS----DVGST-MYCVSGALRAAAELAAMEQCRVIH 224 (575)
Q Consensus 150 ~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~ 224 (575)
++++|...|++. ...|...|++++|++.|.+.... |-.++ ..+|..+..++...|++++|...+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 477777776653 55677777777777777766431 11111 234445555555555555555555
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHc-CChHHHHHHHHHHHHcCC----
Q 008183 225 GHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQ-GDQSTVLELFHLLEMRGF---- 299 (575)
Q Consensus 225 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~---- 299 (575)
...++.. ...|+...+ ..+|+.+...|... |++++|+..|++..+...
T Consensus 101 ~~Al~l~---------------~~~g~~~~~------------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~ 153 (292)
T 1qqe_A 101 ENAIQIF---------------THRGQFRRG------------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS 153 (292)
T ss_dssp HHHHHHH---------------HHTTCHHHH------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHH---------------HHcCCHHHH------------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC
Confidence 4443321 000111000 12344455555553 566666555555543210
Q ss_pred CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCh-----hHHHHHHHHHhccCChHHHHHHHHhC-CCCCCH-
Q 008183 300 APD-EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGL-----EHYTCLISAMGRAGRLEDAERIAMAM-PFEPDA- 371 (575)
Q Consensus 300 ~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~- 371 (575)
.+. ..++..+...+...|++++|...|++......-.+.. ..|..+...+...|++++|...|++. .+.|+.
T Consensus 154 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 233 (292)
T 1qqe_A 154 VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA 233 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----
T ss_pred hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence 000 2345555666666666666666666553221101111 13455555566666666666666655 333321
Q ss_pred -----HHHHHHHHHHH--HcCChHHHHHHHHHHHhcCCC
Q 008183 372 -----AVWRALLSFSA--IHGKADMASKMGKRLIDINPY 403 (575)
Q Consensus 372 -----~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~ 403 (575)
..+..++.++. ..+++++|...++++..++|.
T Consensus 234 ~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~ 272 (292)
T 1qqe_A 234 DSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKW 272 (292)
T ss_dssp ----HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHH
T ss_pred CcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHH
Confidence 12333444443 234456666666555555553
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.93 E-value=8.1e-08 Score=91.93 Aligned_cols=207 Identities=11% Similarity=0.044 Sum_probs=142.6
Q ss_pred hHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCC-----CC----cchHHHHHHHHHhCCCchHH
Q 008183 115 AFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE-----RD----VVCYGAMIVGFAQNSRLVDS 185 (575)
Q Consensus 115 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~~~~A 185 (575)
+++.|...+..+ ...|...|++++|...|++..+ .+ ..+|+.+...|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777776664 6678899999999999987643 11 45899999999999999999
Q ss_pred HHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcc-CCHHHHHHHHhhhCC
Q 008183 186 LSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKA-GIVSDARRVFDENLS 264 (575)
Q Consensus 186 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~ 264 (575)
+..|++..+. +...|+...+ ..+++.+..+|... |++++|.+.|++++.
T Consensus 97 ~~~~~~Al~l---------------~~~~g~~~~~---------------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~ 146 (292)
T 1qqe_A 97 VDSLENAIQI---------------FTHRGQFRRG---------------ANFKFELGEILENDLHDYAKAIDCYELAGE 146 (292)
T ss_dssp HHHHHHHHHH---------------HHHTTCHHHH---------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---------------HHHcCCHHHH---------------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 9999987651 1222332221 23455666777775 888888777776444
Q ss_pred --C--CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008183 265 --V--LN----SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDE------YSFLAVLTALCNAGLAGESEKWIERMK 330 (575)
Q Consensus 265 --~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~------~t~~~ll~a~~~~g~~~~a~~~~~~m~ 330 (575)
+ .+ ..+|+.+...|.+.|++++|+..|++..+....... .++..+..++...|++++|...+++..
T Consensus 147 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 147 WYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1 11 345777888888899999999999888875433222 256677777888999999999988663
Q ss_pred HhcCCCCCh------hHHHHHHHHHh--ccCChHHHHHHHHhC-CCCC
Q 008183 331 VRYKLEPGL------EHYTCLISAMG--RAGRLEDAERIAMAM-PFEP 369 (575)
Q Consensus 331 ~~~~~~p~~------~~~~~li~~~~--~~g~~~~A~~~~~~m-~~~p 369 (575)
.+.|+. ..+..++..|. ..+++++|...|+++ .+.|
T Consensus 227 ---~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~ 271 (292)
T 1qqe_A 227 ---SEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (292)
T ss_dssp ---CC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred ---hhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHH
Confidence 445542 13444556664 567899999999887 3444
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.91 E-value=3.4e-07 Score=86.46 Aligned_cols=57 Identities=11% Similarity=-0.051 Sum_probs=25.5
Q ss_pred HHHHHHHHccCCHHHHHHHHhhhCCC----CChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008183 240 TGLIDGYGKAGIVSDARRVFDENLSV----LNSIAWNAMMAGYAQQGDQSTVLELFHLLEM 296 (575)
Q Consensus 240 ~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 296 (575)
..+..+|...|++++|++++.+.+.. .+...+..++..|.+.|+.+.|.+.+++|.+
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 34444444555555555555442221 1233344444444445555555555544444
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.90 E-value=8.6e-08 Score=90.53 Aligned_cols=131 Identities=8% Similarity=0.053 Sum_probs=96.0
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHhHHC------CCCc-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHh------C-
Q 008183 166 VVCYGAMIVGFAQNSRLVDSLSVFADMRSS------DVGS-TMYCVSGALRAAAELAAMEQCRVIHGHAVVS------G- 231 (575)
Q Consensus 166 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------g- 231 (575)
..+|..+...|...|++++|+..|++.... +-.| ...++..+...+...|++++|...+..+++. .
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 345666777777777777777777776543 2222 2346677777777788888888777777654 1
Q ss_pred CCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCC------C----ChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008183 232 LDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSV------L----NSIAWNAMMAGYAQQGDQSTVLELFHLLEM 296 (575)
Q Consensus 232 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 296 (575)
.+.....+..+...|...|++++|.+.|++++.. + ...++..+...|...|++++|...|++..+
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1234677888999999999999999999875432 1 245788899999999999999999998865
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.86 E-value=5.9e-07 Score=84.80 Aligned_cols=159 Identities=10% Similarity=-0.047 Sum_probs=67.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-----ChhHHH
Q 008183 270 AWNAMMAGYAQQGDQSTVLELFHLLEMRGFAP-DEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEP-----GLEHYT 343 (575)
Q Consensus 270 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-----~~~~~~ 343 (575)
++..+..++...|++++|++++.+-...|..+ +...+..++..+.+.|+.+.|.+.++.|... .| +..+..
T Consensus 102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~---~~d~~~~~d~~l~ 178 (310)
T 3mv2_B 102 ELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA---IEDTVSGDNEMIL 178 (310)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CccccccchHHHH
Confidence 33344444555555555555555443333211 2333444444455555555555555554221 33 122333
Q ss_pred HHHHHH--hc--cCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc----------CCCCchhH
Q 008183 344 CLISAM--GR--AGRLEDAERIAMAM-PFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDI----------NPYDDSAY 408 (575)
Q Consensus 344 ~li~~~--~~--~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----------~p~~~~~~ 408 (575)
.|+.++ .. .++.++|..+|+++ ...|+..+-..|+.++...|++++|++.++.+.+. +|.++.+.
T Consensus 179 ~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~L 258 (310)
T 3mv2_B 179 NLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFL 258 (310)
T ss_dssp HHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHH
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHH
Confidence 333221 11 22455555555554 12233222223333444555555555555544433 24444444
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHhh
Q 008183 409 VIVANVLSGVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 409 ~~l~~~~~~~g~~~~a~~~~~~m~~ 433 (575)
..+|......|+ +|.++++++++
T Consensus 259 aN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 259 ANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred HHHHHHHHHhCh--HHHHHHHHHHH
Confidence 444444444443 44455554444
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.86 E-value=7.4e-08 Score=90.43 Aligned_cols=168 Identities=13% Similarity=-0.021 Sum_probs=102.9
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHhhhCC-CC-C---hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC-HHHHHH
Q 008183 236 VIVGTGLIDGYGKAGIVSDARRVFDENLS-VL-N---SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGF-APD-EYSFLA 308 (575)
Q Consensus 236 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~-~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~-~~t~~~ 308 (575)
...+..+...+.+.|++++|.+.|+.++. .| + ...+..+..+|.+.|++++|+..|++..+... .|. ...+..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 34444455555566666666666665333 12 2 34455555566666666666666666655421 111 233444
Q ss_pred HHHHHHh--------cCCHHHHHHHHHHHHHhcCCCCC-hhHH-----------------HHHHHHHhccCChHHHHHHH
Q 008183 309 VLTALCN--------AGLAGESEKWIERMKVRYKLEPG-LEHY-----------------TCLISAMGRAGRLEDAERIA 362 (575)
Q Consensus 309 ll~a~~~--------~g~~~~a~~~~~~m~~~~~~~p~-~~~~-----------------~~li~~~~~~g~~~~A~~~~ 362 (575)
+..++.. .|++++|...|++..... |+ .... ..+...|.+.|++++|...|
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 4455555 666666666666554332 32 1222 45677888999999999998
Q ss_pred HhC-CCCCC----HHHHHHHHHHHHHc----------CChHHHHHHHHHHHhcCCCCch
Q 008183 363 MAM-PFEPD----AAVWRALLSFSAIH----------GKADMASKMGKRLIDINPYDDS 406 (575)
Q Consensus 363 ~~m-~~~p~----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~ 406 (575)
++. ...|+ ...+..+..++... |++++|...++++++..|+++.
T Consensus 172 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 172 EAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 877 22232 45677777888766 8889999999999999998764
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.86 E-value=2.6e-07 Score=86.63 Aligned_cols=171 Identities=12% Similarity=-0.004 Sum_probs=135.5
Q ss_pred CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hh
Q 008183 264 SVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAP-D-EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LE 340 (575)
Q Consensus 264 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~ 340 (575)
.+.+...+..+...+.+.|++++|+..|+++.+..... . ...+..+..++...|++++|...|+.......-.|. ..
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 34566677778888999999999999999998864221 1 567888888999999999999999999655322233 45
Q ss_pred HHHHHHHHHhc--------cCChHHHHHHHHhC-CCCCC-HHHH-----------------HHHHHHHHHcCChHHHHHH
Q 008183 341 HYTCLISAMGR--------AGRLEDAERIAMAM-PFEPD-AAVW-----------------RALLSFSAIHGKADMASKM 393 (575)
Q Consensus 341 ~~~~li~~~~~--------~g~~~~A~~~~~~m-~~~p~-~~~~-----------------~~ll~~~~~~g~~~~a~~~ 393 (575)
.+..+...+.. .|++++|...|++. ...|+ ...+ ..+...+...|++++|...
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 67777888888 99999999999887 22332 2222 4567888999999999999
Q ss_pred HHHHHhcCCCCc---hhHHHHHHHHHhC----------CCchHHHHHHHHHhhC
Q 008183 394 GKRLIDINPYDD---SAYVIVANVLSGV----------GRWDEVAEVRKVMKDR 434 (575)
Q Consensus 394 ~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~ 434 (575)
++++++..|.++ .++..+..+|... |++++|...+++..+.
T Consensus 171 ~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 171 YEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 999999998754 4788888999876 8999999999998764
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.83 E-value=1.9e-07 Score=76.85 Aligned_cols=128 Identities=19% Similarity=0.277 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 008183 270 AWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAM 349 (575)
Q Consensus 270 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 349 (575)
.|..+...+...|++++|+.+|+++.+.. +.+..++..+...+...|++++|..+++++... .|+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~----------- 67 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPR----------- 67 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTT-----------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH---CCC-----------
Confidence 34555555666666666666666655542 223445555555555556666666665555321 121
Q ss_pred hccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHH
Q 008183 350 GRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRK 429 (575)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 429 (575)
+...|..+...+...|++++|...++++.+..|.+..++..++.+|...|++++|...++
T Consensus 68 --------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 68 --------------------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp --------------------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred --------------------chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHH
Confidence 233344444444444445555555555444444444445555555555555555555555
Q ss_pred HHh
Q 008183 430 VMK 432 (575)
Q Consensus 430 ~m~ 432 (575)
++.
T Consensus 128 ~~~ 130 (136)
T 2fo7_A 128 KAL 130 (136)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.83 E-value=3.3e-07 Score=83.88 Aligned_cols=183 Identities=9% Similarity=-0.031 Sum_probs=114.2
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHhhhCC-CCC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCH-HHHHH
Q 008183 236 VIVGTGLIDGYGKAGIVSDARRVFDENLS-VLN----SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFA-PDE-YSFLA 308 (575)
Q Consensus 236 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~-~t~~~ 308 (575)
...+..+...+.+.|++++|.+.|++++. .|+ ...+..+..+|.+.|++++|+..|++..+.... |.. ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 34455566777888888888888887443 232 245667777888888888888888888765322 111 13333
Q ss_pred HHHHHHh------------------cCCHHHHHHHHHHHHHhcCCCCCh-hHHHHHHHHHhccCChHHHHHHHHhCCCCC
Q 008183 309 VLTALCN------------------AGLAGESEKWIERMKVRYKLEPGL-EHYTCLISAMGRAGRLEDAERIAMAMPFEP 369 (575)
Q Consensus 309 ll~a~~~------------------~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 369 (575)
+..++.. .|+.++|...|+.+... .|+. ..+.+...... .... .
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~~----~~~~------~---- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLVF----LKDR------L---- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHHH----HHHH------H----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHHH----HHHH------H----
Confidence 3333332 34455555555544322 2321 11111110000 0000 0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHhCCCchHHHHHHHHHhhCCC
Q 008183 370 DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDD---SAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436 (575)
Q Consensus 370 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 436 (575)
......+...+...|++++|...++++++..|.++ .++..+..+|.+.|++++|.+.++.+...+.
T Consensus 147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 00112455678889999999999999999999876 4688899999999999999999999887654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.83 E-value=1.2e-07 Score=78.21 Aligned_cols=95 Identities=18% Similarity=0.227 Sum_probs=82.1
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhC
Q 008183 341 HYTCLISAMGRAGRLEDAERIAMAM-PFE-PDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGV 418 (575)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 418 (575)
.|..+...+...|++++|..+++++ ... .+...|..+...+...|++++|...++++.+..|.++..+..++..|...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 4667777888888888888888876 223 35788888999999999999999999999999999988999999999999
Q ss_pred CCchHHHHHHHHHhhCC
Q 008183 419 GRWDEVAEVRKVMKDRR 435 (575)
Q Consensus 419 g~~~~a~~~~~~m~~~~ 435 (575)
|++++|.+.++++.+..
T Consensus 83 ~~~~~A~~~~~~~~~~~ 99 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD 99 (136)
T ss_dssp TCHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHhC
Confidence 99999999999987654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.80 E-value=3.8e-08 Score=105.96 Aligned_cols=169 Identities=11% Similarity=-0.075 Sum_probs=134.4
Q ss_pred HccCCHHHHHHHHhhhC--------C--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 008183 247 GKAGIVSDARRVFDENL--------S--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316 (575)
Q Consensus 247 ~~~g~~~~A~~~~~~~~--------~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 316 (575)
...|++++|.+.|++++ . +.+...|..+...|.+.|++++|++.|++..+... -+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHHc
Confidence 67888999998888755 2 44567788888889999999999999998887532 2567788888888889
Q ss_pred CCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHH
Q 008183 317 GLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKM 393 (575)
Q Consensus 317 g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 393 (575)
|++++|...|++... +.|+ ...|..+...|.+.|++++ .+.|++. .+.| +...|..+..++...|++++|...
T Consensus 481 g~~~~A~~~~~~al~---l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD---TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHH---HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999988743 3464 6778888888999999988 8888776 3455 477888899999999999999999
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHhCCC
Q 008183 394 GKRLIDINPYDDSAYVIVANVLSGVGR 420 (575)
Q Consensus 394 ~~~~~~~~p~~~~~~~~l~~~~~~~g~ 420 (575)
++++++++|.+..++..+..+|...|+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 999999999888888888888877665
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=1.4e-08 Score=86.60 Aligned_cols=136 Identities=10% Similarity=0.022 Sum_probs=88.1
Q ss_pred HcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHH
Q 008183 280 QQGDQSTVLELFHLLEMRGFAP-DEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLED 357 (575)
Q Consensus 280 ~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~ 357 (575)
..|++++|+..++..... .| +...+..+...|.+.|++++|.+.|++... +.|+ ...|..+...|.+.|++++
T Consensus 9 ~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp CHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCchHH
Confidence 334455555554444321 12 123344455556666666666666665532 2343 5666667777777777777
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHH-HHHHHHhcCCCCchhHHHHHHHHHhCCC
Q 008183 358 AERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASK-MGKRLIDINPYDDSAYVIVANVLSGVGR 420 (575)
Q Consensus 358 A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 420 (575)
|...|++. .+.| +..+|..+...+...|+.++|.+ .++++++++|.++.+|......+...|+
T Consensus 84 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 84 AVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 77777665 3455 47788888888888888876655 4588999999998888888888877764
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=1.8e-07 Score=89.30 Aligned_cols=176 Identities=11% Similarity=0.004 Sum_probs=132.0
Q ss_pred HHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008183 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV 331 (575)
Q Consensus 252 ~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 331 (575)
.+...+.+.. ..+.+...+..+...+.+.|++++|+..|++..+... -+...+..+...+...|++++|...+++..
T Consensus 102 ~~~l~~~l~~-~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~- 178 (287)
T 3qou_A 102 EEAIRALLDX-VLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIP- 178 (287)
T ss_dssp HHHHHHHHHH-HSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSC-
T ss_pred HHHHHHHHHH-HcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCc-
Confidence 3344455555 3344555666777778888888888888888877532 256677788888888999999999888763
Q ss_pred hcCCCCChhHHHHH-HHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--ch
Q 008183 332 RYKLEPGLEHYTCL-ISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYD--DS 406 (575)
Q Consensus 332 ~~~~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~ 406 (575)
...|+....... ...+.+.++.++|...+++. ...| +...+..+...+...|++++|...+.++++.+|.+ ..
T Consensus 179 --~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~ 256 (287)
T 3qou_A 179 --LQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQ 256 (287)
T ss_dssp --GGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGH
T ss_pred --hhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccch
Confidence 235654333222 23356777788888887776 3455 58889999999999999999999999999999987 77
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHh
Q 008183 407 AYVIVANVLSGVGRWDEVAEVRKVMK 432 (575)
Q Consensus 407 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 432 (575)
++..|+.+|...|+.++|...+++-.
T Consensus 257 a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 257 TRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 89999999999999999988877643
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.73 E-value=9.2e-07 Score=80.05 Aligned_cols=173 Identities=10% Similarity=-0.057 Sum_probs=116.1
Q ss_pred HHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHH
Q 008183 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG----LAGESEKWIERMK 330 (575)
Q Consensus 255 A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~m~ 330 (575)
|.+.|++.....+..++..+...|...+++++|++.|++..+.| +...+..|-..|.. + +.++|..+|++.
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A- 79 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKA- 79 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH-
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH-
Confidence 44555543444556666666666666667777777776666654 44555555555555 5 677777777766
Q ss_pred HhcCCCCChhHHHHHHHHHhc----cCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHHH----cCChHHHHHHHHHHH
Q 008183 331 VRYKLEPGLEHYTCLISAMGR----AGRLEDAERIAMAM-PFEPD---AAVWRALLSFSAI----HGKADMASKMGKRLI 398 (575)
Q Consensus 331 ~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~----~g~~~~a~~~~~~~~ 398 (575)
.+. -+...+..|...|.. .+++++|.++|++. ...|+ +..+..|...|.. .++.++|...+++..
T Consensus 80 ~~~---g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 80 VEA---GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HHT---TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HHC---CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 332 245566666667766 67888888888776 33332 6777778777777 678888888888888
Q ss_pred hcCCCCchhHHHHHHHHHhC-C-----CchHHHHHHHHHhhCCC
Q 008183 399 DINPYDDSAYVIVANVLSGV-G-----RWDEVAEVRKVMKDRRV 436 (575)
Q Consensus 399 ~~~p~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~~~ 436 (575)
+. |.++.++..|..+|... | ++++|...+++..+.|.
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 77 44666777888888654 3 78888888888777664
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.69 E-value=5.9e-07 Score=96.65 Aligned_cols=189 Identities=15% Similarity=0.020 Sum_probs=143.3
Q ss_pred HhcccHHHHHHHHHHHH--------HhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHc
Q 008183 212 AELAAMEQCRVIHGHAV--------VSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQ 281 (575)
Q Consensus 212 ~~~~~~~~a~~~~~~~~--------~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~ 281 (575)
...+++++|.+.++..+ +. .+.+...+..+...|.+.|++++|.+.|++++. +.+...|..+...|.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 66788888888888887 33 245677888889999999999999999988555 56778899999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHH
Q 008183 282 GDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAER 360 (575)
Q Consensus 282 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~ 360 (575)
|++++|++.|++..+.... +...+..+..++.+.|++++ ...|++... +.|+ ...|..+..+|.+.|++++|.+
T Consensus 481 g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWS---TNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHH---hCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999998876322 56778888888999999999 999988743 3454 6788899999999999999999
Q ss_pred HHHhC-CCCCC-HHHHHHHHHHHHHcCC-----hHHHHHHHHHHHhcCCCCch
Q 008183 361 IAMAM-PFEPD-AAVWRALLSFSAIHGK-----ADMASKMGKRLIDINPYDDS 406 (575)
Q Consensus 361 ~~~~m-~~~p~-~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~ 406 (575)
.|++. .+.|+ ...|..+..++...++ .+...+..+.+.+..+.++.
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~ 608 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR 608 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence 99998 56776 6778778777766555 23334444444444444443
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.68 E-value=6.7e-07 Score=86.15 Aligned_cols=221 Identities=7% Similarity=-0.039 Sum_probs=146.0
Q ss_pred CCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHH
Q 008183 179 NSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRV 258 (575)
Q Consensus 179 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 258 (575)
.|++++|.+++++..+... .. + +...++++.|...|..+ ...|...|++++|.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 4667788888877654211 10 0 00135555555555443 4567777888888887
Q ss_pred HhhhCC----CCC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 008183 259 FDENLS----VLN----SIAWNAMMAGYAQQGDQSTVLELFHLLEMR----GFAP-DEYSFLAVLTALCNAGLAGESEKW 325 (575)
Q Consensus 259 ~~~~~~----~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~ 325 (575)
|.+++. ..+ ..+|+.+...|.+.|++++|+..|++..+. |-.+ -..++..+...|.. |++++|...
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 776433 111 346777888888889999999888876543 2111 13567778888888 999999999
Q ss_pred HHHHHHhcCCCCC----hhHHHHHHHHHhccCChHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHHcCChHHHHHH
Q 008183 326 IERMKVRYKLEPG----LEHYTCLISAMGRAGRLEDAERIAMAM-PF---EPD----AAVWRALLSFSAIHGKADMASKM 393 (575)
Q Consensus 326 ~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~ 393 (575)
|++...-..-..+ ..++..+...|.+.|++++|...|++. .+ .++ ..++..+...+...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9877432211111 467888889999999999999998876 11 122 23666777778888999999999
Q ss_pred HHHHHhcCCCCchh-----HHHHHHHHHhCCCchHHHHH
Q 008183 394 GKRLIDINPYDDSA-----YVIVANVLSGVGRWDEVAEV 427 (575)
Q Consensus 394 ~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~~ 427 (575)
+++.+ ..|....+ ...++..| ..|+.+.+..+
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 99999 88765432 33455555 56776665553
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=4.7e-07 Score=95.46 Aligned_cols=160 Identities=11% Similarity=0.019 Sum_probs=113.4
Q ss_pred cCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008183 249 AGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326 (575)
Q Consensus 249 ~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 326 (575)
.|++++|.+.|++++. +.+...|..+...|.+.|++++|++.|++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3677778888877444 3456778888888888888888888888887753 225677778888888888888888888
Q ss_pred HHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc---CChHHHHHHHHHHHhc
Q 008183 327 ERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIH---GKADMASKMGKRLIDI 400 (575)
Q Consensus 327 ~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~ 400 (575)
++.... .|+ ...+..+...|.+.|++++|.+.|++. ...| +...+..+...+... |+.++|.+.++++++.
T Consensus 81 ~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 877433 354 678888888888999999999888876 3344 477888899999999 9999999999999999
Q ss_pred CCCCchhHHHHH
Q 008183 401 NPYDDSAYVIVA 412 (575)
Q Consensus 401 ~p~~~~~~~~l~ 412 (575)
+|.+...|..+.
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 998877766554
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.65 E-value=6.1e-07 Score=78.50 Aligned_cols=155 Identities=11% Similarity=-0.020 Sum_probs=108.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHhcCC---CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHH-HHh
Q 008183 138 GSALVHFYSRFRSPDNAKKVFDEIRE---RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRA-AAE 213 (575)
Q Consensus 138 ~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~ 213 (575)
...+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..... |+.......... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 44566677889999999999998775 366788889999999999999999999886543 344332221111 112
Q ss_pred cccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC-CCC---hhhHHHHHHHHHHcCChHHHHH
Q 008183 214 LAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS-VLN---SIAWNAMMAGYAQQGDQSTVLE 289 (575)
Q Consensus 214 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~---~~~~~~li~~~~~~g~~~~A~~ 289 (575)
.+....+...++..++.. +.+...+..+...|...|++++|.+.|++++. .|+ ...+..+...|...|+.++|..
T Consensus 87 ~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 87 QAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 222234566777777653 44577778888888888888888888887554 332 4477778888888888888888
Q ss_pred HHHHHH
Q 008183 290 LFHLLE 295 (575)
Q Consensus 290 l~~~m~ 295 (575)
.|++..
T Consensus 166 ~y~~al 171 (176)
T 2r5s_A 166 KYRRQL 171 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877654
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=3e-07 Score=96.95 Aligned_cols=151 Identities=16% Similarity=0.063 Sum_probs=116.9
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHH
Q 008183 281 QGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAE 359 (575)
Q Consensus 281 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~ 359 (575)
.|++++|++.|++..+.. +-+...+..+...+...|++++|...+++.. .+.|+ ...+..+...|...|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGL---ALHPGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---TTSTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 478899999999987753 2357888889999999999999999999874 34565 788999999999999999999
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhC---CCchHHHHHHHHHhhC
Q 008183 360 RIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGV---GRWDEVAEVRKVMKDR 434 (575)
Q Consensus 360 ~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~a~~~~~~m~~~ 434 (575)
+.+++. ...| +...|..+...+...|++++|.+.++++.+.+|.+..++..+..+|... |++++|.+.+++..+.
T Consensus 78 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 78 VLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 999887 3445 5889999999999999999999999999999999999999999999999 9999999999887654
Q ss_pred C
Q 008183 435 R 435 (575)
Q Consensus 435 ~ 435 (575)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.64 E-value=8.8e-07 Score=79.90 Aligned_cols=133 Identities=14% Similarity=-0.022 Sum_probs=70.4
Q ss_pred HHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 008183 240 TGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317 (575)
Q Consensus 240 ~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 317 (575)
+.+...|.+.|++++|...|++.+. +.+...|..+...|...|++++|+..|++..+... -+..++..+..++...|
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHh
Confidence 3356666666666666666665443 34556666666666666666666666666665422 24455555555554433
Q ss_pred C--HHHHHHHHHHHHHhcCCCCCh--hHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHHHHHHHH
Q 008183 318 L--AGESEKWIERMKVRYKLEPGL--EHYTCLISAMGRAGRLEDAERIAMAM-PFEPDAAVWRALL 378 (575)
Q Consensus 318 ~--~~~a~~~~~~m~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll 378 (575)
. .+.+...+... +.|+. ..+..+...+...|++++|...|++. .+.|+......+.
T Consensus 137 ~~~~~~~~~~~~~~-----~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~ 197 (208)
T 3urz_A 137 EQEKKKLETDYKKL-----SSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-----hCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 2 22333333322 12322 22233344455566777777777665 5566655444443
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.2e-06 Score=79.00 Aligned_cols=128 Identities=11% Similarity=0.022 Sum_probs=92.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHh
Q 008183 272 NAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMG 350 (575)
Q Consensus 272 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~ 350 (575)
+.+...|.+.|++++|+..|++..+... -+...+..+..++...|++++|...|++... +.|+ ...+..+...|.
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKAP-NNVDCLEACAEMQVCRGQEKDALRMYEKILQ---LEADNLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHH
Confidence 3477788899999999999998887632 2677788888888899999999999988753 3565 677888887776
Q ss_pred ccCC--hHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 008183 351 RAGR--LEDAERIAMAMPFEPDA--AVWRALLSFSAIHGKADMASKMGKRLIDINPYD 404 (575)
Q Consensus 351 ~~g~--~~~A~~~~~~m~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 404 (575)
..|. .+.+...++... .|+. ..|..+..++...|++++|...+++++++.|.+
T Consensus 134 ~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 134 LTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 6554 445566666653 4443 334445556667788999999999999988853
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.2e-05 Score=76.42 Aligned_cols=218 Identities=9% Similarity=0.029 Sum_probs=100.2
Q ss_pred chHHHHHHHHhHHCCCCcCHH-HHHHHHHHHHhcc--cHHHHHHHHHHHHHhCCCCchhHHHHHHHHH----Hcc---CC
Q 008183 182 LVDSLSVFADMRSSDVGSTMY-CVSGALRAAAELA--AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGY----GKA---GI 251 (575)
Q Consensus 182 ~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~----~~~---g~ 251 (575)
.++|++++..+... .|+.. .|+.--..+...+ +++++...++.++... +.+..+++.--..+ .+. ++
T Consensus 49 s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 49 SERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp SHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCC
Confidence 35666666666552 34333 3444444444455 5555555555555543 33333444333333 333 44
Q ss_pred HHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008183 252 VSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQS--TVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIE 327 (575)
Q Consensus 252 ~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~--~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 327 (575)
+++++++++.++. +.+..+|+.-.-.+.+.|.++ ++++.++++.+.... |...++.-...+.+.+..
T Consensus 126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~-------- 196 (306)
T 3dra_A 126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHL-------- 196 (306)
T ss_dssp THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGG--------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccc--------
Confidence 5555555554332 344445554444444445444 555555555544322 344444333333333320
Q ss_pred HHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHH-HHHHHHHHHhcC---
Q 008183 328 RMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADM-ASKMGKRLIDIN--- 401 (575)
Q Consensus 328 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~~--- 401 (575)
. ....++++++.++++ ...| |...|+-+-..+.+.|+... ...+..++.+++
T Consensus 197 ---------~-------------~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 254 (306)
T 3dra_A 197 ---------A-------------TDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQ 254 (306)
T ss_dssp ---------C-------------CHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTE
T ss_pred ---------c-------------hhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCC
Confidence 0 000044444444433 2233 35555555555555544222 334444444443
Q ss_pred CCCchhHHHHHHHHHhCCCchHHHHHHHHHhh
Q 008183 402 PYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 402 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 433 (575)
|.++.++..++.+|.+.|+.++|.++++.+.+
T Consensus 255 ~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 255 VTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp ESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 44445555555555555666666666555543
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=2.2e-06 Score=81.56 Aligned_cols=163 Identities=8% Similarity=-0.076 Sum_probs=105.8
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC-CCChhhHHH-HHHH
Q 008183 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS-VLNSIAWNA-MMAG 277 (575)
Q Consensus 200 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~-li~~ 277 (575)
+...+..+...+...|++++|...++.+++.. +.+...+..+...|.+.|++++|.+.+++++. .|+...... ....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 34455666667777788888888888877764 44667777788888888888888888887333 344332222 2223
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHH
Q 008183 278 YAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLED 357 (575)
Q Consensus 278 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 357 (575)
+.+.++.++|+..|++..... +.+...+..+..++...|++++|...+.++.....-..+...+..+...|...|+.++
T Consensus 195 l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 566677777777777776653 2355666777777777777777777777774432111124566667777777777766
Q ss_pred HHHHHHh
Q 008183 358 AERIAMA 364 (575)
Q Consensus 358 A~~~~~~ 364 (575)
|...|++
T Consensus 274 a~~~~r~ 280 (287)
T 3qou_A 274 LASXYRR 280 (287)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666543
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.60 E-value=4.1e-07 Score=79.64 Aligned_cols=157 Identities=11% Similarity=0.021 Sum_probs=91.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 008183 239 GTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316 (575)
Q Consensus 239 ~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 316 (575)
...+...+.+.|++++|...|++.+. +.+...|..+...|.+.|++++|+..|++..... |+.... .+...+
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~-~~~~~~--- 82 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYK-SLIAKL--- 82 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHH-HHHHHH---
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHH-HHHHHH---
Confidence 44455556666666666666666333 3445556666666666666666666665554332 222211 111000
Q ss_pred CCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHH
Q 008183 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMG 394 (575)
Q Consensus 317 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 394 (575)
.+...+...+|...+++. ...| +...+..+...+...|++++|...+
T Consensus 83 -------------------------------~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~ 131 (176)
T 2r5s_A 83 -------------------------------ELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELL 131 (176)
T ss_dssp -------------------------------HHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -------------------------------HHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence 001111112234444443 2345 4777777888888888888888888
Q ss_pred HHHHhcCCCC--chhHHHHHHHHHhCCCchHHHHHHHHHh
Q 008183 395 KRLIDINPYD--DSAYVIVANVLSGVGRWDEVAEVRKVMK 432 (575)
Q Consensus 395 ~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 432 (575)
+++++.+|.. +.++..+..+|...|+.++|...+++..
T Consensus 132 ~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 132 WNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 8888887754 4477788888888888888888777654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.60 E-value=2.2e-07 Score=78.90 Aligned_cols=102 Identities=10% Similarity=0.069 Sum_probs=89.3
Q ss_pred CCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHH
Q 008183 334 KLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVI 410 (575)
Q Consensus 334 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 410 (575)
.+.|+ ...+..+...+.+.|++++|...|++. .+.| +...|..+..++...|++++|...++++++++|.++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 34554 567778888899999999999999887 4456 58899999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCchHHHHHHHHHhhCC
Q 008183 411 VANVLSGVGRWDEVAEVRKVMKDRR 435 (575)
Q Consensus 411 l~~~~~~~g~~~~a~~~~~~m~~~~ 435 (575)
+..+|...|++++|...|++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999887643
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.59 E-value=2.2e-06 Score=77.50 Aligned_cols=173 Identities=9% Similarity=-0.104 Sum_probs=109.8
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcC----ChHHHHHHHHHHH
Q 008183 220 CRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQG----DQSTVLELFHLLE 295 (575)
Q Consensus 220 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~l~~~m~ 295 (575)
|.+.+....+.| ++..+..|..+|...+++++|.+.|++.....+..++..|...|.. + ++++|++.|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 344455555543 4555666666666667777777777665555566666666666665 5 6777777777766
Q ss_pred HcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhcCCCCC---hhHHHHHHHHHhc----cCChHHHHHHHHh
Q 008183 296 MRGFAPDEYSFLAVLTALCN----AGLAGESEKWIERMKVRYKLEPG---LEHYTCLISAMGR----AGRLEDAERIAMA 364 (575)
Q Consensus 296 ~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~----~g~~~~A~~~~~~ 364 (575)
+.| +...+..|-..|.. .+++++|..+|++.. + ..|. ...+..|..+|.. .+++++|..+|++
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~-~--~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAA-R--DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHT-S--STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHH-H--cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 554 44555556666655 667777777777652 2 2332 5666677777766 6778888888777
Q ss_pred C-CCCCCHHHHHHHHHHHHHc-C-----ChHHHHHHHHHHHhcCC
Q 008183 365 M-PFEPDAAVWRALLSFSAIH-G-----KADMASKMGKRLIDINP 402 (575)
Q Consensus 365 m-~~~p~~~~~~~ll~~~~~~-g-----~~~~a~~~~~~~~~~~p 402 (575)
. ...++...+..|...|... | +.++|...+++..+.+.
T Consensus 155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 6 2224555666676666543 2 78888888888877764
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.55 E-value=7.4e-05 Score=71.06 Aligned_cols=230 Identities=10% Similarity=-0.025 Sum_probs=150.8
Q ss_pred HHHHhCCChHHHHHHHHhcCC--C-CcchHHHHHHHHHhCC--CchHHHHHHHHhHHCCCCcCHHHHHHHHHHH----Hh
Q 008183 143 HFYSRFRSPDNAKKVFDEIRE--R-DVVCYGAMIVGFAQNS--RLVDSLSVFADMRSSDVGSTMYCVSGALRAA----AE 213 (575)
Q Consensus 143 ~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~----~~ 213 (575)
....+....++|+.+++.+.. | +...||.--..+...| +++++++.++.+..... -+...|+.--..+ ..
T Consensus 41 a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~ 119 (306)
T 3dra_A 41 ALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMEL 119 (306)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHh
Confidence 334444555789999998765 3 4557888888888888 99999999999987532 2233444433333 44
Q ss_pred c---ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHH--HHHHHHhhhCC--CCChhhHHHHHHHHHHcCC---
Q 008183 214 L---AAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS--DARRVFDENLS--VLNSIAWNAMMAGYAQQGD--- 283 (575)
Q Consensus 214 ~---~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~--- 283 (575)
. ++++++..++..+.+.. +.+-.+++.-.-.+.+.|.++ ++++.+++++. ..|..+|+.-...+.+.|.
T Consensus 120 l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 120 NNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp TTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCC
T ss_pred ccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccch
Confidence 5 78999999999999875 678888888888888899888 99999988554 6678888876665555554
Q ss_pred ---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHH-HH
Q 008183 284 ---QSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLED-AE 359 (575)
Q Consensus 284 ---~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~ 359 (575)
++++++.++++....+. | ...|+-+-..+.+.|+..+ +.
T Consensus 199 ~~~~~eEl~~~~~aI~~~p~-n------------------------------------~SaW~y~~~ll~~~~~~~~~~~ 241 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVKCPQ-N------------------------------------PSTWNYLLGIHERFDRSITQLE 241 (306)
T ss_dssp HHHHHHHHHHHHHHHHHCSS-C------------------------------------HHHHHHHHHHHHHTTCCGGGGH
T ss_pred hhhHHHHHHHHHHHHHhCCC-C------------------------------------ccHHHHHHHHHHhcCCChHHHH
Confidence 44444444444433221 3 4444444444444444222 33
Q ss_pred HHHHhC-CC----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-cCCCCchhHHHH
Q 008183 360 RIAMAM-PF----EPDAAVWRALLSFSAIHGKADMASKMGKRLID-INPYDDSAYVIV 411 (575)
Q Consensus 360 ~~~~~m-~~----~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l 411 (575)
.+.++. .+ ..+...+..+...+.+.|+.++|.++++.+.+ .+|.....|...
T Consensus 242 ~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~ 299 (306)
T 3dra_A 242 EFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQ 299 (306)
T ss_dssp HHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHH
Confidence 333333 11 23566777777777777778888888888775 677665555443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.55 E-value=0.00011 Score=75.27 Aligned_cols=97 Identities=10% Similarity=-0.007 Sum_probs=66.5
Q ss_pred CCccHHHHHHHHHhhCCCcccHHHHHHHHhHcCCChHHHHHHHccCC--CCChhhHHHHHHHHhcCch----HHHHHHHH
Q 008183 14 TSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIP--SPNIVSWTALISAHSNSPL----SLNIFLSM 87 (575)
Q Consensus 14 ~~~~~~~~~~~~~~~g~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~----a~~~~~~m 87 (575)
++..++.++++.+..- |. |+++.|..+|++.. .|++..|..-+.-..+.+. ...+|+..
T Consensus 10 ~i~~aR~vyer~l~~~-P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~a 74 (493)
T 2uy1_A 10 ELSSPSAIMEHARRLY-MS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFT 74 (493)
T ss_dssp --CCHHHHHHHHHHHH-HT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHH
T ss_pred chHHHHHHHHHHHHHC-CC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 4778888888876542 22 78999999998764 5888899888776655543 67778777
Q ss_pred hhC-CCCCc-CCChhhHHHHHHHHh----hchhhHHHHHHHHHHHHhh
Q 008183 88 LRH-PTLSF-LPNQRTLASLFKTCA----SLSHAFLFGLSLHSLSLKL 129 (575)
Q Consensus 88 ~~~-~~~~~-~p~~~t~~~ll~~~~----~~~~~~~~a~~~~~~~~~~ 129 (575)
... | . +++...|...+.-+. ..+ +.+.++.+++.+++.
T Consensus 75 l~~vg---~d~~s~~iW~~Yi~f~~~~~~~~~-~~~~vR~iy~rAL~~ 118 (493)
T 2uy1_A 75 LGQFE---NYWDSYGLYKEYIEEEGKIEDEQT-RIEKIRNGYMRALQT 118 (493)
T ss_dssp HHHST---TCTTCHHHHHHHHHHTSSCSSHHH-HHHHHHHHHHHHHTS
T ss_pred HHHcC---CCcccHHHHHHHHHHHHhchhhhH-HHHHHHHHHHHHHhC
Confidence 653 2 2 235566666665543 235 788999999999874
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.53 E-value=7.9e-06 Score=77.94 Aligned_cols=92 Identities=9% Similarity=0.004 Sum_probs=48.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHhhhCC----C-C----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCC-H
Q 008183 238 VGTGLIDGYGKAGIVSDARRVFDENLS----V-L----NSIAWNAMMAGYAQQGDQSTVLELFHLLEMR----GFAPD-E 303 (575)
Q Consensus 238 ~~~~li~~~~~~g~~~~A~~~~~~~~~----~-~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~ 303 (575)
+++.+...|...|++++|...|++++. . . ...+|+.+...|.+.|++++|+..+++..+. +..+. .
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~ 236 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 355555555555555555555554331 0 1 1124555556666666666666666554321 22222 4
Q ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHH
Q 008183 304 YSFLAVLTALCNAG-LAGESEKWIERM 329 (575)
Q Consensus 304 ~t~~~ll~a~~~~g-~~~~a~~~~~~m 329 (575)
.+|..+..++...| ..++|...+++.
T Consensus 237 ~~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 55666666666666 346666666555
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=1.7e-07 Score=79.64 Aligned_cols=120 Identities=12% Similarity=0.027 Sum_probs=100.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCh
Q 008183 311 TALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKA 387 (575)
Q Consensus 311 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~ 387 (575)
..+...|++++|...+.... ...|+ ...+-.+...|.+.|++++|.+.|++. .+.| +..+|..+...+...|++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 34456688899998888652 34454 456677899999999999999999987 4566 589999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHH-HHHHhh
Q 008183 388 DMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEV-RKVMKD 433 (575)
Q Consensus 388 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~ 433 (575)
++|...++++++++|.++.++..+..+|.+.|++++|.+. +++..+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999887665 466554
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.51 E-value=4e-06 Score=76.53 Aligned_cols=185 Identities=11% Similarity=-0.079 Sum_probs=129.3
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC-C-chhHHHHHHHHHHccCCHHHHHHHHhhhCC-CCC-hh---hHH
Q 008183 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLD-R-NVIVGTGLIDGYGKAGIVSDARRVFDENLS-VLN-SI---AWN 272 (575)
Q Consensus 200 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~-~~---~~~ 272 (575)
+...+-.....+...|++++|...++.+++.... + ....+..+..+|.+.|++++|.+.|++.+. .|+ .. ++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3445556677888999999999999999986321 1 135778889999999999999999998554 333 22 455
Q ss_pred HHHHHHHH------------------cCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 008183 273 AMMAGYAQ------------------QGDQSTVLELFHLLEMRGFAPDEY-SFLAVLTALCNAGLAGESEKWIERMKVRY 333 (575)
Q Consensus 273 ~li~~~~~------------------~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 333 (575)
.+..++.+ .|++++|+..|+++.+. .|+.. ...... + ...+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~----~------l~~~~~~~---- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATK----R------LVFLKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHH----H------HHHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHH----H------HHHHHHHH----
Confidence 55555554 57899999999999875 33322 211111 0 00111111
Q ss_pred CCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCc
Q 008183 334 KLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEPD----AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDD 405 (575)
Q Consensus 334 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 405 (575)
......+...|.+.|++++|...|+++ ...|+ ...+..+..++.+.|+.++|.+.++.+....|.+.
T Consensus 147 -----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 147 -----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred -----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 012234667788999999999999887 23343 35688899999999999999999999988887654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.50 E-value=2.3e-06 Score=77.10 Aligned_cols=125 Identities=10% Similarity=-0.048 Sum_probs=97.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH
Q 008183 306 FLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAI 383 (575)
Q Consensus 306 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~ 383 (575)
+..+...+...|++++|...|.+. +.|+...+..+...|.+.|++++|.+.|++. ...| +...|..+...+..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 344555566677777777777644 2456677777777777788888887777765 2234 57788888888999
Q ss_pred cCChHHHHHHHHHHHhcCCCCc----------------hhHHHHHHHHHhCCCchHHHHHHHHHhhCC
Q 008183 384 HGKADMASKMGKRLIDINPYDD----------------SAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435 (575)
Q Consensus 384 ~g~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 435 (575)
.|++++|...++++++..|.+. .++..+..+|...|++++|...+++..+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999999998887766 789999999999999999999999988654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.50 E-value=5.3e-07 Score=74.01 Aligned_cols=94 Identities=12% Similarity=0.046 Sum_probs=54.8
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 008183 340 EHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSG 417 (575)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 417 (575)
..+......|.+.|++++|.+.|++. .+.| +...|..+..++...|++++|+..++++++++|.++.+|..+..+|..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 44445555555666666666655554 2233 355556666666666666666666666666666666666666666666
Q ss_pred CCCchHHHHHHHHHhh
Q 008183 418 VGRWDEVAEVRKVMKD 433 (575)
Q Consensus 418 ~g~~~~a~~~~~~m~~ 433 (575)
.|++++|.+.|++..+
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6666666666655544
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.50 E-value=1.2e-05 Score=76.67 Aligned_cols=159 Identities=9% Similarity=-0.051 Sum_probs=112.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcC-CCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC----hhHHHH
Q 008183 274 MMAGYAQQGDQSTVLELFHLLEMRG-FAPDEY----SFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG----LEHYTC 344 (575)
Q Consensus 274 li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~ 344 (575)
.+..+...|++++|..++++..+.. ..|+.. .+..+...+...+++++|...+.+......-.++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3566777888888888888877642 223321 2334555566677888888888877442211222 236788
Q ss_pred HHHHHhccCChHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC------CchhHH
Q 008183 345 LISAMGRAGRLEDAERIAMAM--------PFEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDINPY------DDSAYV 409 (575)
Q Consensus 345 li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~ 409 (575)
+...|...|++++|...|++. ...+. ..+|..+...|...|++++|...++++++..+. -..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888888888888888887765 11122 447888899999999999999999998875422 145788
Q ss_pred HHHHHHHhCCC-chHHHHHHHHHh
Q 008183 410 IVANVLSGVGR-WDEVAEVRKVMK 432 (575)
Q Consensus 410 ~l~~~~~~~g~-~~~a~~~~~~m~ 432 (575)
.+..+|.+.|+ +++|...+++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 99999999995 599998887664
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.47 E-value=7.2e-07 Score=84.72 Aligned_cols=192 Identities=7% Similarity=-0.044 Sum_probs=101.8
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008183 236 VIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313 (575)
Q Consensus 236 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 313 (575)
...+..+...|.+.|++++|.+.|++++. +.+...|..+...|.+.|++++|+..+++..+.. +.+...+..+..++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34444555555666666666666655333 3345555666666666666666666666655432 12345555666666
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCCCCh-hHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 008183 314 CNAGLAGESEKWIERMKVRYKLEPGL-EHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASK 392 (575)
Q Consensus 314 ~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~ 392 (575)
...|++++|...|...... .|+. ..+...+....+..+...... .......++......+ ..+ ..|+.++|.+
T Consensus 83 ~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~~ 156 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL-IAAERERELE 156 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH-HHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH-HHHHHHHHHH
Confidence 6666666666666655322 1211 011111111111111111111 1112223333333333 222 2577888888
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHhC-CCchHHHHHHHHHhhC
Q 008183 393 MGKRLIDINPYDDSAYVIVANVLSGV-GRWDEVAEVRKVMKDR 434 (575)
Q Consensus 393 ~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 434 (575)
.++++.+.+|.+......+...+.+. +.+++|.++|++..+.
T Consensus 157 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 157 ECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 88888888887766666666666666 6688888888877653
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.47 E-value=2.7e-05 Score=79.95 Aligned_cols=319 Identities=8% Similarity=-0.071 Sum_probs=167.9
Q ss_pred HHHHHHHHhhCCCCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhh-CC-CCchhHHHHHHHHHHh----CCChHH
Q 008183 80 SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKL-SL-HDKPFCGSALVHFYSR----FRSPDN 153 (575)
Q Consensus 80 a~~~~~~m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~-g~-~~~~~~~~~li~~~~~----~g~~~~ 153 (575)
+..+|++... ..|+...|..-++-..+.+...+....+|+.++.. |. +.+..+|...+..+.. .|+++.
T Consensus 33 ~~~iferal~-----~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~ 107 (493)
T 2uy1_A 33 LESLFGRCLK-----KSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK 107 (493)
T ss_dssp HHHHHHHHST-----TCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred HHHHHHHHhc-----cCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence 7777777766 34677777666666655542345566666666654 43 2355566666655432 345666
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q 008183 154 AKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLD 233 (575)
Q Consensus 154 A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 233 (575)
+.++|+....--...+..+-..| ..+... .+..+...++... .+.+..|+.++..+...--.
T Consensus 108 vR~iy~rAL~~P~~~~~~lw~~Y-------------~~fE~~---~~~~~~~~~~~~~--~~~y~~ar~~y~~~~~~~~~ 169 (493)
T 2uy1_A 108 IRNGYMRALQTPMGSLSELWKDF-------------ENFELE---LNKITGKKIVGDT--LPIFQSSFQRYQQIQPLIRG 169 (493)
T ss_dssp HHHHHHHHHTSCCTTHHHHHHHH-------------HHHHHH---HCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhChhhhHHHHHHHH-------------HHHHHH---hccccHHHHHHHH--hHHHHHHHHHHHHHHHHHhh
Confidence 77777665431111111111111 111110 0111111111111 12333344444443321000
Q ss_pred CchhHHHHHHHHHHccC--C-----HHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH
Q 008183 234 RNVIVGTGLIDGYGKAG--I-----VSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEY 304 (575)
Q Consensus 234 ~~~~~~~~li~~~~~~g--~-----~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 304 (575)
.+...|...++.--..+ - .+.+..+|++++. +.+...|-..+.-+.+.|+.++|..+|++.... |+..
T Consensus 170 ~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~ 246 (493)
T 2uy1_A 170 WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGM 246 (493)
T ss_dssp CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSS
T ss_pred ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcH
Confidence 12334544444432211 0 2345667776444 445667777777778888899999999888876 4433
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcC--------CCC---ChhHHHHHHHHHhccCChHHHHHHHHhCCCCC--CH
Q 008183 305 SFLAVLTALCNAGLAGESEKWIERMKVRYK--------LEP---GLEHYTCLISAMGRAGRLEDAERIAMAMPFEP--DA 371 (575)
Q Consensus 305 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--------~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p--~~ 371 (575)
.+.. +|......++. ++.+....- ..+ ....|...+..+.+.+.++.|..+|++.. .| +.
T Consensus 247 ~l~~---~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~-~~~~~~ 319 (493)
T 2uy1_A 247 FLSL---YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELG-NEGVGP 319 (493)
T ss_dssp HHHH---HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT-TSCCCH
T ss_pred HHHH---HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhh-CCCCCh
Confidence 2221 12221111111 222212110 001 12456667777777788999999988873 23 33
Q ss_pred HHHHHHHHHHHH-cCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHH
Q 008183 372 AVWRALLSFSAI-HGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVM 431 (575)
Q Consensus 372 ~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 431 (575)
..|......-.. .++.+.|..+++.+++..|.++..+...++...+.|+.+.|..+|+..
T Consensus 320 ~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 320 HVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444332222222 236899999999998877877777777788888889999999888886
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.47 E-value=5.3e-06 Score=79.15 Aligned_cols=163 Identities=7% Similarity=-0.092 Sum_probs=113.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-H----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--CCC--hh
Q 008183 270 AWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPD-E----YSFLAVLTALCNAGLAGESEKWIERMKVRYKL--EPG--LE 340 (575)
Q Consensus 270 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p~--~~ 340 (575)
.+...+..+...|++++|++.+++..+.....+ . ..+..+...+...|++++|...+.+......- .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344456677788888888888877766432211 1 22334455566778888998888876432111 111 34
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC------Cc
Q 008183 341 HYTCLISAMGRAGRLEDAERIAMAM----PFEPD-----AAVWRALLSFSAIHGKADMASKMGKRLIDINPY------DD 405 (575)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~ 405 (575)
+|+.+...|...|++++|...|++. ...|+ ..++..+...|...|++++|...++++++..+. -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7788888888999999888888765 11222 257888899999999999999999998875421 14
Q ss_pred hhHHHHHHHHHhCCCchHH-HHHHHHHh
Q 008183 406 SAYVIVANVLSGVGRWDEV-AEVRKVMK 432 (575)
Q Consensus 406 ~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 432 (575)
.+|..+..+|.+.|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 5788899999999999999 77676654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.5e-06 Score=83.76 Aligned_cols=197 Identities=9% Similarity=-0.049 Sum_probs=149.1
Q ss_pred hcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHH
Q 008183 213 ELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFH 292 (575)
Q Consensus 213 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 292 (575)
..|++++|.+++++..+.. +.. .+...+++++|...|.. ....|...|++++|...|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~---------~~~~~~~~~~A~~~~~~------------a~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS---------FMKWKPDYDSAASEYAK------------AAVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC---------SSSCSCCHHHHHHHHHH------------HHHHHHHTTCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc---------ccCCCCCHHHHHHHHHH------------HHHHHHHcCCHHHHHHHHH
Confidence 3578889999998887652 111 11115889999999988 4667889999999999998
Q ss_pred HHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--CC--ChhHHHHHHHHHhccCChHHHHHHHH
Q 008183 293 LLEMR----GFAPD-EYSFLAVLTALCNAGLAGESEKWIERMKVRYKL--EP--GLEHYTCLISAMGRAGRLEDAERIAM 363 (575)
Q Consensus 293 ~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p--~~~~~~~li~~~~~~g~~~~A~~~~~ 363 (575)
+..+. |-.+. ..+|..+...|...|++++|...|++...-+.- .| ...++..+...|.. |++++|...|+
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~ 139 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQ 139 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 87653 21111 457888889999999999999999876432211 11 14678888889988 99999999988
Q ss_pred hC-CC-----CC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCc------hhHHHHHHHHHhCCCchHHHHHHH
Q 008183 364 AM-PF-----EP--DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDD------SAYVIVANVLSGVGRWDEVAEVRK 429 (575)
Q Consensus 364 ~m-~~-----~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~ 429 (575)
+. .+ .+ ...++..+...+...|++++|...++++++..|.+. ..+..++.++...|++++|...++
T Consensus 140 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~ 219 (307)
T 2ifu_A 140 QAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 76 11 11 156788899999999999999999999998654332 256677888889999999999999
Q ss_pred HHh
Q 008183 430 VMK 432 (575)
Q Consensus 430 ~m~ 432 (575)
+..
T Consensus 220 ~al 222 (307)
T 2ifu_A 220 ESY 222 (307)
T ss_dssp HHT
T ss_pred HHh
Confidence 887
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.43 E-value=4.6e-06 Score=75.13 Aligned_cols=122 Identities=9% Similarity=-0.059 Sum_probs=64.9
Q ss_pred HHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHH
Q 008183 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQ 219 (575)
Q Consensus 140 ~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 219 (575)
.+...|.+.|++++|...|++...++...|..+...|.+.|++++|++.|++..
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-------------------------- 64 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSI-------------------------- 64 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------------------------
T ss_pred HHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH--------------------------
Confidence 334444455555555555555544444455555555555555555555555444
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CC----------------ChhhHHHHHHHHHHc
Q 008183 220 CRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VL----------------NSIAWNAMMAGYAQQ 281 (575)
Q Consensus 220 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----------------~~~~~~~li~~~~~~ 281 (575)
+.. +.+...+..+..+|.+.|++++|.+.|+.++. +. ....|..+...|.+.
T Consensus 65 ---------~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 134 (213)
T 1hh8_A 65 ---------NRD-KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKK 134 (213)
T ss_dssp ---------HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHT
T ss_pred ---------HhC-ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHc
Confidence 332 23344455555555555555555555554322 11 124566667777777
Q ss_pred CChHHHHHHHHHHHHc
Q 008183 282 GDQSTVLELFHLLEMR 297 (575)
Q Consensus 282 g~~~~A~~l~~~m~~~ 297 (575)
|++++|...|++..+.
T Consensus 135 g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 135 EEWKKAEEQLALATSM 150 (213)
T ss_dssp TCHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHc
Confidence 7777777777777664
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.41 E-value=3.9e-06 Score=68.73 Aligned_cols=108 Identities=9% Similarity=-0.001 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 008183 304 YSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSF 380 (575)
Q Consensus 304 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~ 380 (575)
..+......+.+.|++++|...|++.... .|+ ...|..+...|.+.|++++|...|++. .+.| +...|..+..+
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 90 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 34555666777777777777777766432 343 667777777888888888888877776 3445 47889999999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 008183 381 SAIHGKADMASKMGKRLIDINPYDDSAYVIVANV 414 (575)
Q Consensus 381 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 414 (575)
+...|++++|.+.++++++++|.+..++..|.++
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 9999999999999999999999998877766543
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=7.5e-07 Score=75.42 Aligned_cols=101 Identities=17% Similarity=0.142 Sum_probs=85.3
Q ss_pred CCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHH
Q 008183 334 KLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVI 410 (575)
Q Consensus 334 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 410 (575)
.+.|+ ...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...++++++++|.++.++..
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 34453 566777788888999999999998876 3345 68888889999999999999999999999999999999999
Q ss_pred HHHHHHhCCCchHHHHHHHHHhhC
Q 008183 411 VANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 411 l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
+..+|...|++++|...|++..+.
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999887654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.38 E-value=8.8e-06 Score=65.65 Aligned_cols=113 Identities=15% Similarity=0.142 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CC-CCCHHHHHHHHHHH
Q 008183 304 YSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PF-EPDAAVWRALLSFS 381 (575)
Q Consensus 304 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~ 381 (575)
.++..+...+...|++++|..+++++.... +.+...+..+...+.+.|++++|..+|+++ .. ..+..+|..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 444555555556666666666666553221 123455566666666666666666666655 12 23566777788888
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhC
Q 008183 382 AIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGV 418 (575)
Q Consensus 382 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 418 (575)
...|++++|...++++.+..|.++..+..+..++...
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 8888888888888888888888777777776666543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.36 E-value=8.6e-06 Score=69.78 Aligned_cols=125 Identities=12% Similarity=0.006 Sum_probs=89.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 008183 305 SFLAVLTALCNAGLAGESEKWIERMKVRYKLEP-GLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFS 381 (575)
Q Consensus 305 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 381 (575)
.+..+...+...|++++|...+...... .| +...+..+...+...|++++|...+++. ...| +...|..+...+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3445555566666777777666665332 23 3566666777777777777777777665 2233 477788888888
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCchhHHH--HHHHHHhCCCchHHHHHHHHHh
Q 008183 382 AIHGKADMASKMGKRLIDINPYDDSAYVI--VANVLSGVGRWDEVAEVRKVMK 432 (575)
Q Consensus 382 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~--l~~~~~~~g~~~~a~~~~~~m~ 432 (575)
...|++++|...++++++..|.+...+.. ++..+...|++++|...++...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 89999999999999999999888777644 4444778899999998887664
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.4e-05 Score=76.28 Aligned_cols=160 Identities=8% Similarity=-0.114 Sum_probs=99.1
Q ss_pred HHHHHHHHccCCHHHHHHHHhhhCCC-C-Ch------hhHHHHHHHHHHcCChHHHHHHHHHHHHcCC---CCC--HHHH
Q 008183 240 TGLIDGYGKAGIVSDARRVFDENLSV-L-NS------IAWNAMMAGYAQQGDQSTVLELFHLLEMRGF---APD--EYSF 306 (575)
Q Consensus 240 ~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~--~~t~ 306 (575)
...+..+...|++++|.+.+.+.+.. + .. ..+..+...+...|++++|+..|++..+... .+. ..++
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 34555666777777777776653321 1 11 1233344556666777777777777664321 112 3467
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-----hhHHHHHHHHHhccCChHHHHHHHHhC-------CCCCC-HHH
Q 008183 307 LAVLTALCNAGLAGESEKWIERMKVRYKLEPG-----LEHYTCLISAMGRAGRLEDAERIAMAM-------PFEPD-AAV 373 (575)
Q Consensus 307 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~ 373 (575)
+.+...|...|++++|..++++........|+ ..++..+...|.+.|++++|...+++. +.... ..+
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 77777777778888888777766422111222 246777777788888888888777665 11111 567
Q ss_pred HHHHHHHHHHcCChHHH-HHHHHHHHh
Q 008183 374 WRALLSFSAIHGKADMA-SKMGKRLID 399 (575)
Q Consensus 374 ~~~ll~~~~~~g~~~~a-~~~~~~~~~ 399 (575)
|..+...+...|+.++| ...++++..
T Consensus 239 ~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 77888888888888888 776777664
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.32 E-value=9.2e-06 Score=66.17 Aligned_cols=117 Identities=7% Similarity=-0.045 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 008183 303 EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSF 380 (575)
Q Consensus 303 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~ 380 (575)
...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|.+.+++. ...| +...|..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 3445555555666666666666666553321 123556666666667777777777766665 2233 46777888888
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCc
Q 008183 381 SAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRW 421 (575)
Q Consensus 381 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 421 (575)
+...|++++|...++++.+..|.++..+..+..++...|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 88888888898888888888888888888888888877765
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.31 E-value=3.2e-06 Score=70.88 Aligned_cols=100 Identities=18% Similarity=0.082 Sum_probs=83.9
Q ss_pred CCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHH
Q 008183 335 LEPG-LEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIV 411 (575)
Q Consensus 335 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 411 (575)
+.|+ ...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...++++++.+|.++..+..+
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 92 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA 92 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 3443 455666777888899999999998876 3345 588888899999999999999999999999999999999999
Q ss_pred HHHHHhCCCchHHHHHHHHHhhC
Q 008183 412 ANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 412 ~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
..+|...|++++|...+++..+.
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999887654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.30 E-value=4.1e-06 Score=74.65 Aligned_cols=115 Identities=9% Similarity=-0.052 Sum_probs=52.5
Q ss_pred hCCChHHHHH---HHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHH----CCCCc-CHHHHHHHHHHHHhcccHH
Q 008183 147 RFRSPDNAKK---VFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS----SDVGS-TMYCVSGALRAAAELAAME 218 (575)
Q Consensus 147 ~~g~~~~A~~---~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p-~~~t~~~ll~~~~~~~~~~ 218 (575)
..|++++|.+ .+..-+.....+++.+...|...|++++|+..|++... .+..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3456666666 44332222344566666666666666666666666543 11111 1223444444444555555
Q ss_pred HHHHHHHHHHHh----CCC--CchhHHHHHHHHHHccCCHHHHHHHHhh
Q 008183 219 QCRVIHGHAVVS----GLD--RNVIVGTGLIDGYGKAGIVSDARRVFDE 261 (575)
Q Consensus 219 ~a~~~~~~~~~~----g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~ 261 (575)
+|...+....+. +-. .....+..+...|...|++++|.+.+++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 132 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 555554444332 101 0122344444455555555555555444
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.30 E-value=4.7e-06 Score=81.27 Aligned_cols=94 Identities=10% Similarity=-0.014 Sum_probs=80.0
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 008183 339 LEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLS 416 (575)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 416 (575)
...|..+...|.+.|++++|...|++. .+.| +...|..+..++...|++++|...++++++++|.+..++..+..++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 357778888888889999988888877 3445 58889999999999999999999999999999999999999999999
Q ss_pred hCCCchHH-HHHHHHHh
Q 008183 417 GVGRWDEV-AEVRKVMK 432 (575)
Q Consensus 417 ~~g~~~~a-~~~~~~m~ 432 (575)
..|++++| ...++.|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999988 44555553
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.30 E-value=3.6e-06 Score=78.35 Aligned_cols=191 Identities=10% Similarity=-0.032 Sum_probs=115.1
Q ss_pred hcccHHHHHHHHHHHHHhCCCCchhHHHHH-------HHHHHccCCHHHHHHHHhhhCC-CC-------C----------
Q 008183 213 ELAAMEQCRVIHGHAVVSGLDRNVIVGTGL-------IDGYGKAGIVSDARRVFDENLS-VL-------N---------- 267 (575)
Q Consensus 213 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~~~~-~~-------~---------- 267 (575)
..++...|.+.|..+.+.. +.....|..+ ...+.+.++..++...+...+. .| +
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 3456666666666666653 3344555554 3444444444444444433222 11 1
Q ss_pred -----hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC--hh
Q 008183 268 -----SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG--LE 340 (575)
Q Consensus 268 -----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~ 340 (575)
...+-.....+...|++++|.++|..+...+ |+......+...+.+.+++++|+..|... .... .|. ..
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a-~~~~-d~~~~~~ 172 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSA-GKWP-DKFLAGA 172 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTG-GGCS-CHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHh-hccC-CcccHHH
Confidence 0123345566777888888888887776543 44444444555677788888888888744 2211 111 23
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhC---CCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHH
Q 008183 341 HYTCLISAMGRAGRLEDAERIAMAM---PFEPD--AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYV 409 (575)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 409 (575)
.+..+..++.+.|++++|+..|++. +..|. ...+.....++...|+.++|...|+++...+|. ..++.
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~ 245 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAA 245 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHH
Confidence 5666777888888888888888877 22143 345666777788888888888888888888886 44433
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.30 E-value=6.8e-06 Score=64.93 Aligned_cols=98 Identities=13% Similarity=0.068 Sum_probs=84.5
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--CchhHHHHHHH
Q 008183 339 LEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPY--DDSAYVIVANV 414 (575)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 414 (575)
...+..+...+.+.|++++|...|++. ...| +...|..+...+...|++++|...++++++..|. +..++..+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 566777888888999999999988876 2333 5788888999999999999999999999999998 88899999999
Q ss_pred HHhC-CCchHHHHHHHHHhhCCC
Q 008183 415 LSGV-GRWDEVAEVRKVMKDRRV 436 (575)
Q Consensus 415 ~~~~-g~~~~a~~~~~~m~~~~~ 436 (575)
|... |++++|.+.++.......
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHhCCHHHHHHHHHHHhhccc
Confidence 9999 999999999999877543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.29 E-value=9.6e-06 Score=66.43 Aligned_cols=113 Identities=9% Similarity=-0.052 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 008183 304 YSFLAVLTALCNAGLAGESEKWIERMKVRYKLEP-GLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSF 380 (575)
Q Consensus 304 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~ 380 (575)
..+..+...+...|++++|...+++... ..| +...+..+...|...|++++|.+.+++. ...| +...|..+...
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIK---RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 4444455555555555555555554421 223 3455555556666666666666666554 2223 46677777788
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCC
Q 008183 381 SAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVG 419 (575)
Q Consensus 381 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 419 (575)
+...|++++|...++++.+..|.+...+..+..++...|
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 888888888888888888888877777777777776655
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.26 E-value=9.5e-06 Score=72.25 Aligned_cols=150 Identities=16% Similarity=0.001 Sum_probs=64.0
Q ss_pred cCCHHHHHH---HHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHH
Q 008183 249 AGIVSDARR---VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR----GFAP-DEYSFLAVLTALCNAGLAG 320 (575)
Q Consensus 249 ~g~~~~A~~---~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~ 320 (575)
.|++++|.+ .+.. -+......++.+...|...|++++|+..|++.... |..| ...++..+...+...|+++
T Consensus 5 ~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 5 AHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp --CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 455555555 3322 22223344555555555555555555555554331 1111 1234444455555556666
Q ss_pred HHHHHHHHHHHhcCCCC-C----hhHHHHHHHHHhccCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHcCCh
Q 008183 321 ESEKWIERMKVRYKLEP-G----LEHYTCLISAMGRAGRLEDAERIAMAM----PFEPD----AAVWRALLSFSAIHGKA 387 (575)
Q Consensus 321 ~a~~~~~~m~~~~~~~p-~----~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~ 387 (575)
+|...+.+......-.+ + ...+..+...+...|++++|...+++. +..++ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 65555554422211111 1 223444444445555555554444433 00011 12234444444555555
Q ss_pred HHHHHHHHHHHh
Q 008183 388 DMASKMGKRLID 399 (575)
Q Consensus 388 ~~a~~~~~~~~~ 399 (575)
++|...+++..+
T Consensus 164 ~~A~~~~~~al~ 175 (203)
T 3gw4_A 164 LEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555544443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.24 E-value=1.8e-05 Score=67.68 Aligned_cols=25 Identities=16% Similarity=0.049 Sum_probs=10.9
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHh
Q 008183 340 EHYTCLISAMGRAGRLEDAERIAMA 364 (575)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~ 364 (575)
..+..+...+...|++++|...|++
T Consensus 82 ~~~~~~a~~~~~~~~~~~A~~~~~~ 106 (166)
T 1a17_A 82 KGYYRRAASNMALGKFRAALRDYET 106 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHH
Confidence 3344444444444444444444443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.22 E-value=9.3e-07 Score=78.97 Aligned_cols=172 Identities=8% Similarity=-0.023 Sum_probs=98.5
Q ss_pred HHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcC
Q 008183 241 GLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGF-APDEYSFLAVLTALCNAG 317 (575)
Q Consensus 241 ~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~g 317 (575)
..+......|+++++.+.++.... ......|..+...+...|++++|+..|++..+... .|+.. ..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~---~~-------- 77 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWD---DQ-------- 77 (198)
T ss_dssp -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCC---CH--------
T ss_pred chhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccc---hh--------
Confidence 344445556666666666654111 12334566666667777777777777777665321 11000 00
Q ss_pred CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHH
Q 008183 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGK 395 (575)
Q Consensus 318 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~ 395 (575)
..+.- ...+ ....|..+...|.+.|++++|...+++. ...| +...|..+..++...|++++|...++
T Consensus 78 ~~~~~---~~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 146 (198)
T 2fbn_A 78 ILLDK---KKNI--------EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLY 146 (198)
T ss_dssp HHHHH---HHHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hHHHH---HHHH--------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 00000 0000 1256667777788888888888888776 3344 57888889999999999999999999
Q ss_pred HHHhcCCCCchhHHHHHHHHHhCCCchHHH-HHHHHHhhC
Q 008183 396 RLIDINPYDDSAYVIVANVLSGVGRWDEVA-EVRKVMKDR 434 (575)
Q Consensus 396 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~ 434 (575)
++++..|.+..++..+..++...++.+++. ..+..|...
T Consensus 147 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 147 KAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999989999998888887777766 455555443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.22 E-value=8.3e-06 Score=66.52 Aligned_cols=95 Identities=16% Similarity=0.039 Sum_probs=73.4
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 008183 340 EHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSG 417 (575)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 417 (575)
..+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...++++++.+|.++.+|..+..+|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 44556666777778888887777765 3334 477788888888888888888888888888888888888888888888
Q ss_pred CCCchHHHHHHHHHhhC
Q 008183 418 VGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 418 ~g~~~~a~~~~~~m~~~ 434 (575)
.|++++|...+++..+.
T Consensus 85 ~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 85 VKEYASALETLDAARTK 101 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHh
Confidence 88888888888877653
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.20 E-value=6.6e-06 Score=71.73 Aligned_cols=116 Identities=9% Similarity=0.056 Sum_probs=70.5
Q ss_pred cCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHHcCCh--HH
Q 008183 316 AGLAGESEKWIERMKVRYKLEP-GLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSF-SAIHGKA--DM 389 (575)
Q Consensus 316 ~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~-~~~~g~~--~~ 389 (575)
.|++++|...+...... .| +...|..+...|...|++++|...|++. ...| +...|..+... +...|++ ++
T Consensus 23 ~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp ----CCCCHHHHHHHHH---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred ccCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 34555555555544322 22 3455555666666666666666666554 2223 45566666666 5566776 77
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 390 ASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 390 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
|...++++++.+|.++.++..+..+|...|++++|...+++..+.
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 777777777777777777777777777777777777777776654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.20 E-value=1.3e-05 Score=75.94 Aligned_cols=191 Identities=9% Similarity=-0.039 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHH
Q 008183 201 MYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGY 278 (575)
Q Consensus 201 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~ 278 (575)
...+..+...+...|++++|...+...++.. +.+...+..+...|.+.|++++|.+.+++++. +.+...|..+..+|
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3445556666667777777777777776653 44677888888888899999999999888555 45677888888899
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHH
Q 008183 279 AQQGDQSTVLELFHLLEMRGFAPDE-YSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLED 357 (575)
Q Consensus 279 ~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 357 (575)
...|++++|+..|++..+.. |+. ..+...+....+ ...+... ... .......+......+... ..|+.++
T Consensus 83 ~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~~~-~~~-~~~~~~~~~~i~~~l~~l--~~~~~~~ 153 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKKRW-NSI-EERRIHQESELHSYLTRL--IAAERER 153 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHHHH-HHH-HHTCCCCCCHHHHHHHHH--HHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHHHH-HHH-HHHHHhhhHHHHHHHHHH--HHHHHHH
Confidence 99999999999998876542 111 011111111111 1112222 122 222344455444444333 2688999
Q ss_pred HHHHHHhC-CCCCCHH-HHHHHHHHHHHc-CChHHHHHHHHHHHhcC
Q 008183 358 AERIAMAM-PFEPDAA-VWRALLSFSAIH-GKADMASKMGKRLIDIN 401 (575)
Q Consensus 358 A~~~~~~m-~~~p~~~-~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~ 401 (575)
|.+.+++. ...|+.. ....+...+.+. +.+++|.++|.++.+..
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~ 200 (281)
T 2c2l_A 154 ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKR 200 (281)
T ss_dssp HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 99888776 5567643 334444444444 56888999998887643
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=0.0016 Score=62.71 Aligned_cols=174 Identities=8% Similarity=-0.060 Sum_probs=111.7
Q ss_pred HHHHhCCCchHHHHHHHHhHHCCCCcCH-HHHHHHHHHHHhcc-cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcc-C
Q 008183 174 VGFAQNSRLVDSLSVFADMRSSDVGSTM-YCVSGALRAAAELA-AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKA-G 250 (575)
Q Consensus 174 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-g 250 (575)
....+.+..++|++++.++... .|+. ..|+.--..+...+ .++++..+++.++... +.+..+++.-...+.+. +
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~ 138 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISP 138 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcC
Confidence 3334455567888888888764 4543 34555555555666 5888888888887764 55667777766666665 6
Q ss_pred -CHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-
Q 008183 251 -IVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQS--------TVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL- 318 (575)
Q Consensus 251 -~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~--------~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~- 318 (575)
++++++++++.++. ++|..+|+--.-.+.+.|.++ ++++.++++.+..+. |...++.....+.+.+.
T Consensus 139 ~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 139 QDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp SCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTC
T ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccc
Confidence 77888888888555 556777776555555555555 778888887776443 66667666666666654
Q ss_pred ------HHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCC
Q 008183 319 ------AGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGR 354 (575)
Q Consensus 319 ------~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~ 354 (575)
++++.+++.+.... .|+ ...|+-+-..+.+.|+
T Consensus 218 ~~~~~~~~eELe~~~~aI~~---~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIHL---IPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTC
T ss_pred ccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCC
Confidence 56666666655432 343 5566555555555444
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.18 E-value=4.3e-05 Score=71.15 Aligned_cols=180 Identities=12% Similarity=-0.037 Sum_probs=93.0
Q ss_pred hCCChHHHHHHHHhcCC--C-CcchHHHH-------HHHHHhCCCchHHHHHHHHhHHCCCCcCH---------------
Q 008183 147 RFRSPDNAKKVFDEIRE--R-DVVCYGAM-------IVGFAQNSRLVDSLSVFADMRSSDVGSTM--------------- 201 (575)
Q Consensus 147 ~~g~~~~A~~~f~~m~~--~-~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--------------- 201 (575)
..++.+.|.+.|.+..+ | ....|+-+ ...+.+.++..+++..+..-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 46788888888887754 2 44567766 3444444445555555544432 23321
Q ss_pred -------HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCCCh----hh
Q 008183 202 -------YCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS----IA 270 (575)
Q Consensus 202 -------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~ 270 (575)
.........+...|++++|.+++..+...+ |+......+...+.+.+++++|+..|+.....++. ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a 173 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAA 173 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHH
Confidence 112223344455556666665555554432 22224444555666666666666666653332221 24
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008183 271 WNAMMAGYAQQGDQSTVLELFHLLEMRGFAPD--EYSFLAVLTALCNAGLAGESEKWIERMK 330 (575)
Q Consensus 271 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 330 (575)
+..+..++.+.|++++|+..|++.......|. .........++.+.|+.++|..+|+++.
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~ 235 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ 235 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44555556666666666666665553222133 1233344444555666666666666553
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.17 E-value=5.4e-06 Score=67.28 Aligned_cols=94 Identities=16% Similarity=0.034 Sum_probs=81.6
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhC
Q 008183 341 HYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGV 418 (575)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 418 (575)
.+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|.++.++..+..+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4455667788899999999999887 3455 5888999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHhhC
Q 008183 419 GRWDEVAEVRKVMKDR 434 (575)
Q Consensus 419 g~~~~a~~~~~~m~~~ 434 (575)
|++++|...+++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999988764
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=0.00024 Score=68.42 Aligned_cols=215 Identities=12% Similarity=0.055 Sum_probs=154.5
Q ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccC-CHHHHHHHHhhhCC--CCChhhHHHHHHHHHHc-C-ChHHHHH
Q 008183 215 AAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG-IVSDARRVFDENLS--VLNSIAWNAMMAGYAQQ-G-DQSTVLE 289 (575)
Q Consensus 215 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~-g-~~~~A~~ 289 (575)
...++|.++++.++... +-+..+++.--..+...| .+++++++++.++. +.+..+|+.-...+.+. + +++++++
T Consensus 68 e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 68 EKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 34457888888888875 556677888777788888 59999999998554 66788899887777776 7 8999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCC-------
Q 008183 290 LFHLLEMRGFAPDEYSFLAVLTALCNAGLAG--------ESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGR------- 354 (575)
Q Consensus 290 l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--------~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~------- 354 (575)
+++++.+...+ |..+++.-...+.+.+..+ ++.++++++.... .-|...|+-....+.+.++
T Consensus 147 ~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d--p~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 147 YIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD--GRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccccchHH
Confidence 99999876433 6677766555555555554 8888888885442 2357778877777777776
Q ss_pred hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCh--------------------HHHHHHHHHHHhcC------CCCch
Q 008183 355 LEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKA--------------------DMASKMGKRLIDIN------PYDDS 406 (575)
Q Consensus 355 ~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~--------------------~~a~~~~~~~~~~~------p~~~~ 406 (575)
++++++.+++. ...| |...|+-+-..+.+.|+. .........+.... +..+.
T Consensus 224 ~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 303 (349)
T 3q7a_A 224 LQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPL 303 (349)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHH
Confidence 68888888776 4455 688898887777776654 22233333333322 34555
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHhh
Q 008183 407 AYVIVANVLSGVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 407 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 433 (575)
+...|+++|...|+.++|.++++.+.+
T Consensus 304 al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 304 ALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 778899999999999999999999864
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.16 E-value=5.7e-05 Score=60.71 Aligned_cols=59 Identities=17% Similarity=0.291 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008183 270 AWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERM 329 (575)
Q Consensus 270 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 329 (575)
.|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++++
T Consensus 45 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 103 (125)
T 1na0_A 45 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 103 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 33333444444444444444444443321 113333344444444444444444444433
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.14 E-value=5e-05 Score=64.13 Aligned_cols=94 Identities=12% Similarity=-0.023 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHH
Q 008183 203 CVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQ 280 (575)
Q Consensus 203 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~ 280 (575)
.+..+...+.+.|++++|...|+.+++.. +.+...+..+..+|.+.|++++|.+.|++++. +.+...|..+..+|.+
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLR 116 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 45555566666677777777777766654 44566666677777777777777777766433 4455666667777777
Q ss_pred cCChHHHHHHHHHHHHc
Q 008183 281 QGDQSTVLELFHLLEMR 297 (575)
Q Consensus 281 ~g~~~~A~~l~~~m~~~ 297 (575)
.|++++|+..|++..+.
T Consensus 117 lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 117 LKAPLKAKECFELVIQH 133 (151)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777766664
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.14 E-value=1e-05 Score=69.59 Aligned_cols=94 Identities=9% Similarity=0.037 Sum_probs=56.9
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 008183 340 EHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSG 417 (575)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 417 (575)
..+..+...+.+.|++++|...|++. .+.| +...|..+..++...|++++|+..++++++++|.+..+|..+..+|..
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 91 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFD 91 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 44455555555566666666655554 2233 455666666666666666666666666666666666666666666666
Q ss_pred CCCchHHHHHHHHHhh
Q 008183 418 VGRWDEVAEVRKVMKD 433 (575)
Q Consensus 418 ~g~~~~a~~~~~~m~~ 433 (575)
.|++++|...+++..+
T Consensus 92 ~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 92 MADYKGAKEAYEKGIE 107 (164)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH
Confidence 6666666666666554
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.14 E-value=2.2e-05 Score=64.87 Aligned_cols=97 Identities=8% Similarity=-0.024 Sum_probs=78.6
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 008183 338 GLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVL 415 (575)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 415 (575)
+...+..+...+...|++++|...|++. ...| +...|..+...+...|++++|...++++++.+|.++.++..+..+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 4566777777788888888888887765 3334 4778888888888889999999999999888888888888899999
Q ss_pred HhCCCchHHHHHHHHHhhC
Q 008183 416 SGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 416 ~~~g~~~~a~~~~~~m~~~ 434 (575)
...|++++|...+++..+.
T Consensus 88 ~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 9999999999888887653
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=0.0011 Score=63.36 Aligned_cols=192 Identities=10% Similarity=-0.004 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccC--CHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCC-hHHHHHHH
Q 008183 217 MEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG--IVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGD-QSTVLELF 291 (575)
Q Consensus 217 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~-~~~A~~l~ 291 (575)
++++..++..++... +.+..+|+.-...+.+.| .++++.++++.++. +.|..+|+.-.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 566777777777654 556777777767777777 47888888877544 6677788777777777777 47888888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhcc----
Q 008183 292 HLLEMRGFAPDEYSFLAVLTALCNA--------------GLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRA---- 352 (575)
Q Consensus 292 ~~m~~~g~~p~~~t~~~ll~a~~~~--------------g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~---- 352 (575)
.++.+..+. |...|+.....+... +.++++.+++...... .|+ ...|+-+-..+.+.
T Consensus 169 ~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 169 DSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCcc
Confidence 888876543 666666555554443 3466777777666432 454 55665554444444
Q ss_pred -------CChHHHHHHHHhC-CCCCCHHHHHHHHHHH-----HHcCChHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 008183 353 -------GRLEDAERIAMAM-PFEPDAAVWRALLSFS-----AIHGKADMASKMGKRLIDINPYDDSAYVIVANV 414 (575)
Q Consensus 353 -------g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~-----~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 414 (575)
+.++++.+.++++ .+.||. .|+.+-.+. ...+..++....+.++.+++|....-|..+...
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 3456666666665 345542 333222221 124556667777777777777665555554433
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.12 E-value=3.1e-05 Score=67.34 Aligned_cols=125 Identities=10% Similarity=0.025 Sum_probs=93.9
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHH-HhccCCh-
Q 008183 279 AQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEP-GLEHYTCLISA-MGRAGRL- 355 (575)
Q Consensus 279 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~-~~~~g~~- 355 (575)
...|++++|+..|++..+.. +.+...+..+...+...|++++|...|++.... .| +...+..+... |...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCcc
Confidence 45677888888888877653 336677888888888888999998888877433 34 46677777777 7788888
Q ss_pred -HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchh
Q 008183 356 -EDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSA 407 (575)
Q Consensus 356 -~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 407 (575)
++|...|++. ...| +...|..+...+...|++++|...++++++..|.++..
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 151 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINR 151 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccH
Confidence 9999888877 3345 47888888999999999999999999999999887654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.9e-05 Score=64.56 Aligned_cols=97 Identities=14% Similarity=0.044 Sum_probs=88.3
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 008183 338 GLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVL 415 (575)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 415 (575)
+...+..+...+.+.|++++|...|++. ...| +...|..+...+...|++++|...++++++..|.+..++..+..+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 3677888899999999999999999987 4455 6889999999999999999999999999999999999999999999
Q ss_pred HhCCCchHHHHHHHHHhhC
Q 008183 416 SGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 416 ~~~g~~~~a~~~~~~m~~~ 434 (575)
...|++++|...+++..+.
T Consensus 95 ~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHh
Confidence 9999999999999988764
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.12 E-value=2.4e-05 Score=62.25 Aligned_cols=93 Identities=16% Similarity=0.161 Sum_probs=49.3
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhC
Q 008183 341 HYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGV 418 (575)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 418 (575)
.+..+...+...|++++|...|++. ...| +...|..+...+...|++++|...++++.+..|.++..+..+..+|...
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 3344444455555555555555444 1122 3445555555555555555555555555555555555555555555555
Q ss_pred CCchHHHHHHHHHhh
Q 008183 419 GRWDEVAEVRKVMKD 433 (575)
Q Consensus 419 g~~~~a~~~~~~m~~ 433 (575)
|++++|...+++..+
T Consensus 86 ~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 86 NRFEEAKRTYEEGLK 100 (118)
T ss_dssp TCHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHH
Confidence 555555555555543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.11 E-value=3e-05 Score=64.78 Aligned_cols=93 Identities=15% Similarity=0.059 Sum_probs=43.9
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 008183 340 EHYTCLISAMGRAGRLEDAERIAMAM-PFEPD----AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANV 414 (575)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 414 (575)
..+..+...+...|++++|.+.|++. ...|+ ...|..+...+...|++++|...++++++..|.++..+..+..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 108 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQA 108 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHH
Confidence 33444444444444444444444443 23333 34444444444455555555555555555544444444455555
Q ss_pred HHhCCCchHHHHHHHHHh
Q 008183 415 LSGVGRWDEVAEVRKVMK 432 (575)
Q Consensus 415 ~~~~g~~~~a~~~~~~m~ 432 (575)
|...|++++|...+++..
T Consensus 109 ~~~~~~~~~A~~~~~~al 126 (148)
T 2dba_A 109 LEKLGRLDQAVLDLQRCV 126 (148)
T ss_dssp HHHHTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 555555555555554443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.08 E-value=8.1e-05 Score=59.08 Aligned_cols=107 Identities=8% Similarity=0.017 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 008183 305 SFLAVLTALCNAGLAGESEKWIERMKVRYKLEP-GLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFS 381 (575)
Q Consensus 305 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 381 (575)
.+..+...+...|++++|...++..... .| +...+..+...+...|++++|...+++. ...| +...|..+..++
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3444555555566666666666555322 23 3455555666666666666666666554 2233 466777777788
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 008183 382 AIHGKADMASKMGKRLIDINPYDDSAYVIVANV 414 (575)
Q Consensus 382 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 414 (575)
...|++++|...++++.+.+|.++..+..+..+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 888888888888888888888776666555443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=2e-05 Score=66.55 Aligned_cols=91 Identities=14% Similarity=0.042 Sum_probs=44.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008183 238 VGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315 (575)
Q Consensus 238 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 315 (575)
.+..+...+.+.|++++|...|+.++. +.+...|..+..+|...|++++|+..|++...... .+...+..+..++..
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAECLLQ 101 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHH
Confidence 344444455555555555555554222 33444555555555555555555555555544321 133444445555555
Q ss_pred cCCHHHHHHHHHHH
Q 008183 316 AGLAGESEKWIERM 329 (575)
Q Consensus 316 ~g~~~~a~~~~~~m 329 (575)
.|++++|...|+..
T Consensus 102 ~g~~~~A~~~~~~a 115 (148)
T 2vgx_A 102 XGELAEAESGLFLA 115 (148)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 55555555555544
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.08 E-value=5.2e-05 Score=61.51 Aligned_cols=91 Identities=4% Similarity=-0.088 Sum_probs=35.8
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHc
Q 008183 169 YGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGK 248 (575)
Q Consensus 169 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 248 (575)
|..+...+...|++++|+..|++..... +.+...+..+...+...|++++|...+....+.. +.+...+..+...|.+
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHH
Confidence 3344444444444444444444443321 1123333333333344444444444444433331 2223333333444444
Q ss_pred cCCHHHHHHHHhh
Q 008183 249 AGIVSDARRVFDE 261 (575)
Q Consensus 249 ~g~~~~A~~~~~~ 261 (575)
.|++++|.+.|++
T Consensus 93 ~~~~~~A~~~~~~ 105 (131)
T 2vyi_A 93 LNKHVEAVAYYKK 105 (131)
T ss_dssp TTCHHHHHHHHHH
T ss_pred hCCHHHHHHHHHH
Confidence 4444444444433
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.07 E-value=9.1e-05 Score=61.77 Aligned_cols=110 Identities=13% Similarity=-0.011 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHH
Q 008183 303 EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG----LEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRA 376 (575)
Q Consensus 303 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ 376 (575)
...+..+...+...|++++|...|++.. ...|+ ...+..+...|...|++++|...+++. ...| +...|..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQAL---GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHH---HHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 4444455555555555555555555442 22344 455556666666677777777666654 2233 4677778
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 008183 377 LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVL 415 (575)
Q Consensus 377 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 415 (575)
+..++...|++++|...++++++..|.+..++..+..+.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 888888888888999888888888888776665555544
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.07 E-value=7.1e-06 Score=73.12 Aligned_cols=54 Identities=7% Similarity=0.050 Sum_probs=30.5
Q ss_pred HHHHHhCCChHHHHHHHHhcCC---CCcchHHHHHHHHHhCCCchHHHHHHHHhHHC
Q 008183 142 VHFYSRFRSPDNAKKVFDEIRE---RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195 (575)
Q Consensus 142 i~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 195 (575)
+......|+++.|.+.++.-.+ .....|..+...+.+.|++++|+..|++....
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 67 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF 67 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3344455666666666654322 13456777788888899999999999888763
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.05 E-value=5.1e-05 Score=73.84 Aligned_cols=122 Identities=11% Similarity=-0.076 Sum_probs=60.6
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcC--------------HHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q 008183 165 DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGST--------------MYCVSGALRAAAELAAMEQCRVIHGHAVVS 230 (575)
Q Consensus 165 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--------------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 230 (575)
+...|..+...|.+.|++++|+..|++......... ...+..+..++.+.|++++|...+..+++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345677777778888888888888887766321111 234444444444444444444444444443
Q ss_pred CCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHH
Q 008183 231 GLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTV 287 (575)
Q Consensus 231 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A 287 (575)
. +.+...+..+..+|...|++++|.+.|++++. +.+...+..+...+.+.|+.++|
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 2 22344444444444444444444444444222 22333444444444444444444
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.04 E-value=1.3e-05 Score=65.56 Aligned_cols=94 Identities=9% Similarity=-0.013 Sum_probs=64.9
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCc-------hhHHH
Q 008183 340 EHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDD-------SAYVI 410 (575)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-------~~~~~ 410 (575)
..+..+...+.+.|++++|.+.|++. .+.| +...|..+..+|...|++++|+..++++++++|.+. .+|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34555666677777777777777665 3344 366777777777777888888888877777665443 25566
Q ss_pred HHHHHHhCCCchHHHHHHHHHhh
Q 008183 411 VANVLSGVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 411 l~~~~~~~g~~~~a~~~~~~m~~ 433 (575)
+..+|...|++++|.+.|++...
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 77777778888888887776554
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.02 E-value=5.1e-05 Score=61.68 Aligned_cols=106 Identities=8% Similarity=-0.085 Sum_probs=65.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 008183 305 SFLAVLTALCNAGLAGESEKWIERMKVRYKLEP-GLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFS 381 (575)
Q Consensus 305 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 381 (575)
.+..+...+...|++++|...|.+.... .| +...|..+...|.+.|++++|...|++. .+.| +...|..+..++
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3444455555666666666666655322 23 2456666666666666666666666655 2334 366777777777
Q ss_pred HHcCChHHHHHHHHHHHhcC------CCCchhHHHHHH
Q 008183 382 AIHGKADMASKMGKRLIDIN------PYDDSAYVIVAN 413 (575)
Q Consensus 382 ~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~ 413 (575)
...|++++|...++++++.+ |.+..+...+..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~ 120 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 120 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHH
Confidence 78888888888888888777 655555444443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=97.99 E-value=3.7e-05 Score=64.20 Aligned_cols=102 Identities=11% Similarity=-0.048 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 008183 305 SFLAVLTALCNAGLAGESEKWIERMKVRYKLEP-GLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFS 381 (575)
Q Consensus 305 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 381 (575)
.+..+...+.+.|++++|...|+..... .| +...|..+...|.+.|++++|...|++. .+.| +...|..+..++
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 3444555566677777777777666432 34 3556666777777777777777777665 2334 466677778888
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCchhHH
Q 008183 382 AIHGKADMASKMGKRLIDINPYDDSAYV 409 (575)
Q Consensus 382 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 409 (575)
...|++++|...++++++..|.++....
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~ 124 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPAHEA 124 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcchHH
Confidence 8888888888888888888877665443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=0.001 Score=63.66 Aligned_cols=180 Identities=11% Similarity=0.034 Sum_probs=130.6
Q ss_pred HHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHH
Q 008183 252 VSDARRVFDENLS--VLNSIAWNAMMAGYAQQGD--QSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL-AGESEKWI 326 (575)
Q Consensus 252 ~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~ 326 (575)
+++++++++.++. +.+..+|+.-.-.+.+.|+ ++++++++..+.+...+ |...|+.-...+...|. ++++.+.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 5677777777444 6788899988878888884 89999999999987544 77787777777778887 68999999
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHhcc--------------CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc------
Q 008183 327 ERMKVRYKLEPGLEHYTCLISAMGRA--------------GRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIH------ 384 (575)
Q Consensus 327 ~~m~~~~~~~p~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~------ 384 (575)
..+.... .-|...|+-....+.+. +.++++++.+... ...| |...|+-+-..+...
T Consensus 169 ~~~I~~~--p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITRN--FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHHC--SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHHC--CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 9886542 23466666655555443 4578888888776 3455 688887665555544
Q ss_pred -----CChHHHHHHHHHHHhcCCCCchhHHHHHHH---HHhCCCchHHHHHHHHHhhC
Q 008183 385 -----GKADMASKMGKRLIDINPYDDSAYVIVANV---LSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 385 -----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~---~~~~g~~~~a~~~~~~m~~~ 434 (575)
+.++++++.++++++..|++...+..++.. ....|..+++...+.++.+-
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 357899999999999999886555444332 23467777888888888764
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00018 Score=72.56 Aligned_cols=162 Identities=6% Similarity=-0.172 Sum_probs=94.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCCHH---HHHHHH-HHHHhcCCHHHHHHHHHHHHHh---cCCCCC-hhH
Q 008183 271 WNAMMAGYAQQGDQSTVLELFHLLEMR-GFAPDEY---SFLAVL-TALCNAGLAGESEKWIERMKVR---YKLEPG-LEH 341 (575)
Q Consensus 271 ~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~---t~~~ll-~a~~~~g~~~~a~~~~~~m~~~---~~~~p~-~~~ 341 (575)
+..+...|...|++++|.+.+..+... +..++.. .....+ ..+...|+.+.+..++...... .+..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 445566666666666666666555432 1111211 111222 2223456777777776655322 112222 456
Q ss_pred HHHHHHHHhccCChHHHHHHHHhC-----C--CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---CCC----ch
Q 008183 342 YTCLISAMGRAGRLEDAERIAMAM-----P--FEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDIN---PYD----DS 406 (575)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~m-----~--~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~----~~ 406 (575)
+..+...|...|++++|..++++. + .+|. ..++..++..|...|++++|..++++..... +.+ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 667777777888888887777655 1 1222 5567777788888888888888887776532 222 13
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHh
Q 008183 407 AYVIVANVLSGVGRWDEVAEVRKVMK 432 (575)
Q Consensus 407 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 432 (575)
.+..++..+...|++++|...+.+..
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45666777778888888877766553
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.94 E-value=6.3e-05 Score=76.60 Aligned_cols=95 Identities=9% Similarity=0.056 Sum_probs=76.4
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 008183 339 LEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLS 416 (575)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 416 (575)
...|..+..+|.+.|++++|...+++. .+.| +...|..+..+|...|++++|...++++++++|.+..++..+..++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 467788888899999999999988877 3344 58889999999999999999999999999999999999999999999
Q ss_pred hCCCchHHHH-HHHHHhh
Q 008183 417 GVGRWDEVAE-VRKVMKD 433 (575)
Q Consensus 417 ~~g~~~~a~~-~~~~m~~ 433 (575)
+.|+++++.+ .++.|..
T Consensus 397 ~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 9999988764 4555543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00014 Score=62.22 Aligned_cols=90 Identities=14% Similarity=0.023 Sum_probs=36.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 008183 239 GTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316 (575)
Q Consensus 239 ~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 316 (575)
+..+...|.+.|++++|.+.|++.+. +.+...|..+...|.+.|++++|+..|++..+.. +-+...+..+..++...
T Consensus 14 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~ 92 (164)
T 3sz7_A 14 LKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLARFDM 92 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 33333444444444444444443222 2233334444444444444444444444443331 11233344444444444
Q ss_pred CCHHHHHHHHHHH
Q 008183 317 GLAGESEKWIERM 329 (575)
Q Consensus 317 g~~~~a~~~~~~m 329 (575)
|++++|...|++.
T Consensus 93 g~~~~A~~~~~~a 105 (164)
T 3sz7_A 93 ADYKGAKEAYEKG 105 (164)
T ss_dssp TCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH
Confidence 4444444444433
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.93 E-value=9.6e-05 Score=75.31 Aligned_cols=124 Identities=10% Similarity=0.002 Sum_probs=98.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcC--CCCC----hhHHHHHHHHHhccCChHHHHHHHHhC---------CCCCC-HHHHH
Q 008183 312 ALCNAGLAGESEKWIERMKVRYK--LEPG----LEHYTCLISAMGRAGRLEDAERIAMAM---------PFEPD-AAVWR 375 (575)
Q Consensus 312 a~~~~g~~~~a~~~~~~m~~~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~ 375 (575)
.+...|++++|..++++...... +.|+ ..+++.|...|...|++++|..++++. +..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 34578999999988877644321 2232 578889999999999999999888776 34565 67799
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHh-----cCCCCch---hHHHHHHHHHhCCCchHHHHHHHHHhhCC
Q 008183 376 ALLSFSAIHGKADMASKMGKRLID-----INPYDDS---AYVIVANVLSGVGRWDEVAEVRKVMKDRR 435 (575)
Q Consensus 376 ~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 435 (575)
.|...|...|++++|+.+++++++ ++|+++. +...|..++...|++++|+.++.+++++-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999885 6677765 45577788889999999999999998743
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0003 Score=70.81 Aligned_cols=162 Identities=9% Similarity=-0.114 Sum_probs=93.7
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhC-CCCch----hHHHHHHHHHHccCCHHHHHHHHhhhCC----CC----Chhh
Q 008183 204 VSGALRAAAELAAMEQCRVIHGHAVVSG-LDRNV----IVGTGLIDGYGKAGIVSDARRVFDENLS----VL----NSIA 270 (575)
Q Consensus 204 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~----~~~~ 270 (575)
+..+...|...|++++|.+.+..+.+.- -.++. .+.+.+-..+...|+.+.|.+++...+. .. -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 3344444555555555555444443310 00111 1223333344455667777666655322 11 1245
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHc--C--CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-----hh
Q 008183 271 WNAMMAGYAQQGDQSTVLELFHLLEMR--G--FAPD-EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-----LE 340 (575)
Q Consensus 271 ~~~li~~~~~~g~~~~A~~l~~~m~~~--g--~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~ 340 (575)
+..+...|...|++++|..++++.... + -.|. ..++..++..|...|++++|..++.+......-.++ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 667777788888888888888776543 1 1222 346777788888899999999888766432211121 35
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhC
Q 008183 341 HYTCLISAMGRAGRLEDAERIAMAM 365 (575)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m 365 (575)
.+..+...+...|++++|...|.+.
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 5667777788889999888776554
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00016 Score=58.96 Aligned_cols=91 Identities=14% Similarity=0.102 Sum_probs=47.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcC--CCCC----HHHHHHHH
Q 008183 239 GTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRG--FAPD----EYSFLAVL 310 (575)
Q Consensus 239 ~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~----~~t~~~ll 310 (575)
+..+...|.+.|++++|.+.|++++. +.+...|+.+..+|.+.|++++|++.|++..+.. ..++ ..+|..+.
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 34455555566666666666655333 3345555555566666666666666655554321 1111 12344445
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 008183 311 TALCNAGLAGESEKWIERM 329 (575)
Q Consensus 311 ~a~~~~g~~~~a~~~~~~m 329 (575)
.++...|++++|.+.|++.
T Consensus 91 ~~~~~~~~~~~A~~~~~ka 109 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRS 109 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 5555556666666655544
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.87 E-value=0.0001 Score=60.66 Aligned_cols=99 Identities=13% Similarity=-0.067 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 008183 302 DEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALL 378 (575)
Q Consensus 302 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll 378 (575)
+...+..+...+...|++++|...|...... .|+ ...|..+...|...|++++|...+++. .+.| +...|..+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 4455555555566666666666666655322 232 455666666666666666666666555 2233 466777777
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCC
Q 008183 379 SFSAIHGKADMASKMGKRLIDINPY 403 (575)
Q Consensus 379 ~~~~~~g~~~~a~~~~~~~~~~~p~ 403 (575)
.++...|++++|...++++++..|.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChh
Confidence 7777778888888888777776655
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.86 E-value=5.4e-05 Score=63.63 Aligned_cols=62 Identities=19% Similarity=0.099 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhc-------CCCCchhH----HHHHHHHHhCCCchHHHHHHHHHhh
Q 008183 372 AVWRALLSFSAIHGKADMASKMGKRLIDI-------NPYDDSAY----VIVANVLSGVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 372 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~ 433 (575)
..|..+..++...|++++|+..+++.+++ +|++..+| .....++...|++++|...|++..+
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 48888888899999999999999999888 99888888 9999999999999999999998764
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.86 E-value=4.8e-05 Score=61.98 Aligned_cols=89 Identities=12% Similarity=0.135 Sum_probs=51.9
Q ss_pred HHHHHhccCChHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---chhHHHHHHHHH
Q 008183 345 LISAMGRAGRLEDAERIAMAM-PFEPD-A---AVWRALLSFSAIHGKADMASKMGKRLIDINPYD---DSAYVIVANVLS 416 (575)
Q Consensus 345 li~~~~~~g~~~~A~~~~~~m-~~~p~-~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~ 416 (575)
+...+.+.|++++|...|++. ...|+ . ..+..+..++...|++++|...++++++..|.+ +.++..+..+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 334455556666666555554 11222 1 355555666666666666666666666666665 445666666666
Q ss_pred hCCCchHHHHHHHHHhh
Q 008183 417 GVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 417 ~~g~~~~a~~~~~~m~~ 433 (575)
..|++++|...+++..+
T Consensus 88 ~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 66666666666666654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.86 E-value=5.9e-05 Score=61.27 Aligned_cols=95 Identities=8% Similarity=0.074 Sum_probs=76.6
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-------chhHHH
Q 008183 340 EHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYD-------DSAYVI 410 (575)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~ 410 (575)
..+..+...+...|++++|...|++. ...| +...|..+...+...|++++|...++++.+..|.+ ..++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 45666777777888888888887776 2233 57788888888889999999999999998877655 668888
Q ss_pred HHHHHHhCCCchHHHHHHHHHhhC
Q 008183 411 VANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 411 l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
+..+|...|++++|...+++..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999999999999999988764
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.85 E-value=1.5e-05 Score=64.05 Aligned_cols=82 Identities=18% Similarity=0.067 Sum_probs=47.4
Q ss_pred cCChHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHH
Q 008183 352 AGRLEDAERIAMAM-PF---EP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAE 426 (575)
Q Consensus 352 ~g~~~~A~~~~~~m-~~---~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 426 (575)
.|++++|...|++. .. .| +...|..+...+...|++++|...++++++..|.++.++..+..+|...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45555555555554 22 13 245556666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHhh
Q 008183 427 VRKVMKD 433 (575)
Q Consensus 427 ~~~~m~~ 433 (575)
.+++...
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665544
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.84 E-value=3.9e-05 Score=78.55 Aligned_cols=114 Identities=12% Similarity=0.010 Sum_probs=81.2
Q ss_pred HHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHH
Q 008183 313 LCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADM 389 (575)
Q Consensus 313 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~ 389 (575)
+.+.|++++|.+.+++.... .|+ ...|..+...|.+.|++++|.+.+++. .+.| +..+|..+..+|...|++++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 44567777777777766432 343 567777777777777777777777766 3445 47778888888888888888
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHH--HHhCCCchHHHHHHH
Q 008183 390 ASKMGKRLIDINPYDDSAYVIVANV--LSGVGRWDEVAEVRK 429 (575)
Q Consensus 390 a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 429 (575)
|.+.++++++..|.+..++..+..+ +.+.|++++|.+.++
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888888888887777777776 778888888888877
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00013 Score=61.64 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=12.8
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHH
Q 008183 407 AYVIVANVLSGVGRWDEVAEVRKVM 431 (575)
Q Consensus 407 ~~~~l~~~~~~~g~~~~a~~~~~~m 431 (575)
++..+...|...|++++|.+.+++.
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3444555555555555555555443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.82 E-value=6.3e-05 Score=64.35 Aligned_cols=64 Identities=13% Similarity=0.105 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 371 AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 371 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
...|..+..++...|++++|...++++++++|.++.+|..+..+|...|++++|...+++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 4677778888888888888888888888888888888888888888888888888888877654
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00018 Score=60.77 Aligned_cols=134 Identities=10% Similarity=0.011 Sum_probs=102.3
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC----h
Q 008183 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFA-PD----EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG----L 339 (575)
Q Consensus 269 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~ 339 (575)
.++..+...|...|++++|+..+++..+.... ++ ..++..+...+...|++++|...+++......-.++ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 46788888999999999999999988654211 12 146778888899999999999999987443211122 4
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 008183 340 EHYTCLISAMGRAGRLEDAERIAMAM-------PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINP 402 (575)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 402 (575)
..+..+...+...|++++|.+.+++. +..+ ...++..+...+...|++++|...+++.++...
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 56778888999999999999988776 1111 145678888899999999999999999877544
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00023 Score=55.82 Aligned_cols=91 Identities=13% Similarity=-0.023 Sum_probs=39.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHH
Q 008183 238 VGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAP--DEYSFLAVLTAL 313 (575)
Q Consensus 238 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~a~ 313 (575)
.+..+...|.+.|++++|...|++++. +.+...|..+...|...|++++|+..|++..+.. +. +...+..+..++
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHH
Confidence 334444444444455554444444222 2233344444444444444444444444444321 11 233444444444
Q ss_pred Hhc-CCHHHHHHHHHHH
Q 008183 314 CNA-GLAGESEKWIERM 329 (575)
Q Consensus 314 ~~~-g~~~~a~~~~~~m 329 (575)
... |++++|.+.+...
T Consensus 87 ~~~~~~~~~A~~~~~~~ 103 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARA 103 (112)
T ss_dssp TTCSSCSHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHH
Confidence 444 4444444444443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00036 Score=56.58 Aligned_cols=96 Identities=15% Similarity=0.007 Sum_probs=59.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcCCCCC-h---hHHHHHHHHHhccCChHHHHHHHHhC-CCCCC----HHHHHHHHHH
Q 008183 310 LTALCNAGLAGESEKWIERMKVRYKLEPG-L---EHYTCLISAMGRAGRLEDAERIAMAM-PFEPD----AAVWRALLSF 380 (575)
Q Consensus 310 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~---~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~ 380 (575)
...+...|++++|...|+..... .|+ . ..+..+...|.+.|++++|...|++. ...|+ ...+..+..+
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 33445556666666666655332 222 1 35555666666666777666666655 22232 4566677777
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCchhH
Q 008183 381 SAIHGKADMASKMGKRLIDINPYDDSAY 408 (575)
Q Consensus 381 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 408 (575)
+...|++++|...++++++..|.++.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 113 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDAAR 113 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChHHH
Confidence 8888888888888888888888765543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00013 Score=58.88 Aligned_cols=93 Identities=17% Similarity=0.031 Sum_probs=52.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC
Q 008183 309 VLTALCNAGLAGESEKWIERMKVRYKLEP-GLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHG 385 (575)
Q Consensus 309 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g 385 (575)
+...+.+.|++++|...+++.... .| +...|..+...+...|++++|...|++. .+.| +...|..+..++...|
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 334455556666666666655322 34 3455555666666666666666666555 3344 3556666667777777
Q ss_pred ChHHHHHHHHHHHhcCCCC
Q 008183 386 KADMASKMGKRLIDINPYD 404 (575)
Q Consensus 386 ~~~~a~~~~~~~~~~~p~~ 404 (575)
++++|...++++++.+|.+
T Consensus 100 ~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 100 NANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHC-----
T ss_pred CHHHHHHHHHHHHHhCcCC
Confidence 7777777777777766654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00028 Score=57.12 Aligned_cols=57 Identities=9% Similarity=0.041 Sum_probs=23.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008183 272 NAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERM 329 (575)
Q Consensus 272 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 329 (575)
..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++..
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 64 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKA 64 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 333344444444444444444443331 113333333444444444444444444433
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00018 Score=70.81 Aligned_cols=88 Identities=11% Similarity=0.008 Sum_probs=77.0
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 008183 339 LEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLS 416 (575)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 416 (575)
...|..+...|.+.|++++|.+.+++. .+.| +...|..+..+|...|++++|...+++++++.|.+..++..+..++.
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~ 352 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ 352 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 577888889999999999999999887 5566 48889999999999999999999999999999999888888888888
Q ss_pred hCCCchHHHH
Q 008183 417 GVGRWDEVAE 426 (575)
Q Consensus 417 ~~g~~~~a~~ 426 (575)
..++.+++.+
T Consensus 353 ~~~~~~~a~k 362 (370)
T 1ihg_A 353 KIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8877776654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=0.0021 Score=67.00 Aligned_cols=168 Identities=8% Similarity=-0.028 Sum_probs=125.6
Q ss_pred HHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--
Q 008183 252 VSDARRVFDENLS--VLNSIAWNAMMAGYAQQGD----------QSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG-- 317 (575)
Q Consensus 252 ~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g-- 317 (575)
-++|.+.++.++. +.+...|+.--..+...|+ ++++++.++.+.+...+ +..+|..-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccc
Confidence 3566777776443 4455667766666666666 78888888888876544 6677777777777778
Q ss_pred CHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccC-ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc---------
Q 008183 318 LAGESEKWIERMKVRYKLEP-GLEHYTCLISAMGRAG-RLEDAERIAMAM-PFEP-DAAVWRALLSFSAIH--------- 384 (575)
Q Consensus 318 ~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g-~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~--------- 384 (575)
+++++.+.++++... .| +...|+.-...+.+.| .++++.+.++++ ...| |...|+.....+...
T Consensus 124 ~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 124 NWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred cHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence 678888888888543 34 4666776666677777 788888888887 4455 578888877777663
Q ss_pred -----CChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchH
Q 008183 385 -----GKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDE 423 (575)
Q Consensus 385 -----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 423 (575)
+.++++.+.+.+++..+|.+..+|..+...+.+.++.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 457899999999999999999999999999999888555
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00043 Score=70.77 Aligned_cols=115 Identities=11% Similarity=-0.022 Sum_probs=61.0
Q ss_pred HHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008183 245 GYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGES 322 (575)
Q Consensus 245 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 322 (575)
.|.+.|++++|.+.|++++. +.+..+|..+..+|.+.|++++|++.|++..+.. +.+..++..+..++...|++++|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 34455666666666655333 3345556666666666666666666666665542 12445566666666666666666
Q ss_pred HHHHHHHHHhcCCCCC-hhHHHHHHHH--HhccCChHHHHHHHH
Q 008183 323 EKWIERMKVRYKLEPG-LEHYTCLISA--MGRAGRLEDAERIAM 363 (575)
Q Consensus 323 ~~~~~~m~~~~~~~p~-~~~~~~li~~--~~~~g~~~~A~~~~~ 363 (575)
.+.+++.... .|+ ...+..+..+ +.+.|++++|.+.++
T Consensus 94 ~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6666655332 232 2333333333 556666666666665
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0001 Score=71.79 Aligned_cols=147 Identities=9% Similarity=-0.007 Sum_probs=81.3
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 008183 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLIS 347 (575)
Q Consensus 268 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 347 (575)
...|..+...+.+.|++++|+..|++.... .|+... +...++.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 345667777788888999999988887764 344332 222333333332211 136778888
Q ss_pred HHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHH-HhCCCchHH
Q 008183 348 AMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVL-SGVGRWDEV 424 (575)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~a 424 (575)
.|.+.|++++|...+++. .+.| +...|..+..+|...|++++|...++++++++|.+..++..|..+. ...+..+.+
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999988876 3445 5888899999999999999999999999999998888888777773 345566777
Q ss_pred HHHHHHHhhC
Q 008183 425 AEVRKVMKDR 434 (575)
Q Consensus 425 ~~~~~~m~~~ 434 (575)
..+++.|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 7788777654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.62 E-value=2.2e-05 Score=62.01 Aligned_cols=92 Identities=10% Similarity=-0.010 Sum_probs=72.0
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------chhHH
Q 008183 338 GLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYD------DSAYV 409 (575)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 409 (575)
+...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++++..|.+ ..++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 3456677778888888888888888776 3344 57888889999999999999999999999999987 66677
Q ss_pred HHHHHHHhCCCchHHHHHHH
Q 008183 410 IVANVLSGVGRWDEVAEVRK 429 (575)
Q Consensus 410 ~l~~~~~~~g~~~~a~~~~~ 429 (575)
.+..++...|+++.|...++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 77777777777666655443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.61 E-value=5.8e-05 Score=60.55 Aligned_cols=91 Identities=18% Similarity=0.149 Sum_probs=59.9
Q ss_pred cCCHHHHHHHHHHHHHhcCC-CCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHH
Q 008183 316 AGLAGESEKWIERMKVRYKL-EPG-LEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMAS 391 (575)
Q Consensus 316 ~g~~~~a~~~~~~m~~~~~~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 391 (575)
.|++++|...|++.. +.+. .|+ ...+..+...|.+.|++++|...|++. ...| +...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al-~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAI-ASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHH-SSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHH-HcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 456666666666653 2110 232 456667777777777777777777766 3344 4777778888888888888888
Q ss_pred HHHHHHHhcCCCCchh
Q 008183 392 KMGKRLIDINPYDDSA 407 (575)
Q Consensus 392 ~~~~~~~~~~p~~~~~ 407 (575)
..+++.++..|.++..
T Consensus 82 ~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 82 ELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHhCCCcHHH
Confidence 8888888888877653
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00019 Score=61.29 Aligned_cols=67 Identities=18% Similarity=0.104 Sum_probs=57.4
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCc
Q 008183 339 LEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDD 405 (575)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 405 (575)
...|..+..+|.+.|++++|...+++. .+.| +...|..+..++...|++++|...++++++++|.++
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 467778888888999999999888776 3455 488899999999999999999999999999999876
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00064 Score=69.12 Aligned_cols=122 Identities=7% Similarity=-0.077 Sum_probs=61.7
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcC--------------HHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q 008183 165 DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGST--------------MYCVSGALRAAAELAAMEQCRVIHGHAVVS 230 (575)
Q Consensus 165 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--------------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 230 (575)
....|..+...|.+.|++++|+..|++..+...... ...|..+..++.+.+++++|...+..+++.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 344677788888999999999999998876321110 234444444444444444444444444443
Q ss_pred CCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHH
Q 008183 231 GLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTV 287 (575)
Q Consensus 231 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A 287 (575)
. +.+...+..+..+|.+.|++++|...|++++. +.+...|..+...+.+.++.++|
T Consensus 347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 2 22344444444444444444444444444322 22333444444444444444433
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00019 Score=60.22 Aligned_cols=68 Identities=13% Similarity=0.100 Sum_probs=50.6
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhC--------CCCCC-HHHH----HHHHHHHHHcCChHHHHHHHHHHHhcCCCCchh
Q 008183 341 HYTCLISAMGRAGRLEDAERIAMAM--------PFEPD-AAVW----RALLSFSAIHGKADMASKMGKRLIDINPYDDSA 407 (575)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 407 (575)
.|..+..++.+.|++++|+..+++. .+.|+ ...| .....++...|++++|+..|++.+++.|.+...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 5555555566666666655555443 34786 6778 899999999999999999999999999887654
Q ss_pred H
Q 008183 408 Y 408 (575)
Q Consensus 408 ~ 408 (575)
+
T Consensus 139 ~ 139 (159)
T 2hr2_A 139 T 139 (159)
T ss_dssp C
T ss_pred H
Confidence 3
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00045 Score=53.47 Aligned_cols=64 Identities=17% Similarity=0.161 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhh
Q 008183 370 DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 370 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 433 (575)
+...|..+...+...|++++|...++++++.+|.++.+|..+..+|...|++++|...+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5788999999999999999999999999999999999999999999999999999999988764
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00031 Score=55.91 Aligned_cols=77 Identities=17% Similarity=0.088 Sum_probs=62.9
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhh
Q 008183 357 DAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 357 ~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 433 (575)
+|...|++. ...| +...|..+...+...|++++|...++++++.+|.+..+|..+..+|...|++++|...+++..+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555544 3445 4788888888899999999999999999999998888899999999999999999999888765
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00035 Score=67.91 Aligned_cols=150 Identities=11% Similarity=0.051 Sum_probs=78.5
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHhhhCC-CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008183 236 VIVGTGLIDGYGKAGIVSDARRVFDENLS-VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314 (575)
Q Consensus 236 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 314 (575)
...+..+...|.+.|++++|...|++++. .|+... +...|+.+++...+. ...|..+..++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 45677888899999999999999998554 232221 122333333332221 136677777888
Q ss_pred hcCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HHHHHHHHHHH-HHcCChHHH
Q 008183 315 NAGLAGESEKWIERMKVRYKLEP-GLEHYTCLISAMGRAGRLEDAERIAMAM-PFEPD-AAVWRALLSFS-AIHGKADMA 390 (575)
Q Consensus 315 ~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~-~~~g~~~~a 390 (575)
+.|++++|...++..... .| +...|..+..+|...|++++|...|++. .+.|+ ...+..|.... ...+..+.+
T Consensus 242 ~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp TTTCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999988877432 45 4678888888999999999999999887 45564 44555555442 344567778
Q ss_pred HHHHHHHHhcCCCCc
Q 008183 391 SKMGKRLIDINPYDD 405 (575)
Q Consensus 391 ~~~~~~~~~~~p~~~ 405 (575)
...+.++.+..|.++
T Consensus 319 ~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 319 KEMYKGIFKGKDEGG 333 (338)
T ss_dssp ---------------
T ss_pred HHHHHHhhCCCCCCC
Confidence 888888888877654
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00073 Score=50.69 Aligned_cols=81 Identities=20% Similarity=0.261 Sum_probs=61.9
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 008183 339 LEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLS 416 (575)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 416 (575)
...+..+...+.+.|++++|...|++. ...| +...|..+...+...|++++|...++++++.+|.++.++..+..++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 455666777777788888888877766 2234 57778888888888899999999999998888888888887777776
Q ss_pred hCC
Q 008183 417 GVG 419 (575)
Q Consensus 417 ~~g 419 (575)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 543
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0026 Score=62.52 Aligned_cols=60 Identities=13% Similarity=-0.075 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008183 237 IVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEM 296 (575)
Q Consensus 237 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 296 (575)
.++..+..+|.+.|++++|.+.+++++. +.+...|..+..+|...|++++|+..|++..+
T Consensus 274 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 274 SCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4444555555555555555555554333 22344444455555555555555555555444
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00077 Score=68.64 Aligned_cols=62 Identities=10% Similarity=-0.087 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHH-----cCC-CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008183 270 AWNAMMAGYAQQGDQSTVLELFHLLEM-----RGF-APDEY-SFLAVLTALCNAGLAGESEKWIERMKV 331 (575)
Q Consensus 270 ~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~-~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~ 331 (575)
+++.|...|...|++++|+.++++..+ .|. .|+.. +...+-.++...+.+++|+..+..+++
T Consensus 395 ~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 395 AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555544432 121 22222 233333444456666666666666644
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.22 E-value=0.005 Score=50.77 Aligned_cols=106 Identities=8% Similarity=-0.100 Sum_probs=57.9
Q ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHH----cCChHHHHHHH
Q 008183 216 AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQ----QGDQSTVLELF 291 (575)
Q Consensus 216 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~ 291 (575)
+.++|.+.+....+.| .++.. |..+|...+.+++|.+.|++.....+..++..|...|.. .+++++|++.|
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~ 84 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYY 84 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence 4455555555555554 22222 455555555555566666554445555555555555555 55666666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHH
Q 008183 292 HLLEMRGFAPDEYSFLAVLTALCN----AGLAGESEKWIERM 329 (575)
Q Consensus 292 ~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m 329 (575)
++..+.| +...+..|-..|.. .++.++|..+|+..
T Consensus 85 ~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 123 (138)
T 1klx_A 85 SKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKA 123 (138)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence 6665543 34444455555555 55666666666655
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.008 Score=49.50 Aligned_cols=112 Identities=7% Similarity=-0.085 Sum_probs=88.4
Q ss_pred CCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHc----cCCHHHH
Q 008183 180 SRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGK----AGIVSDA 255 (575)
Q Consensus 180 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A 255 (575)
+++++|++.|++..+.| .|+.. +-..+.....+++|.+.+....+.| +...+..|..+|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 46788899998888877 34333 5555666677888888888888875 56777888888887 7889999
Q ss_pred HHHHhhhCCCCChhhHHHHHHHHHH----cCChHHHHHHHHHHHHcCC
Q 008183 256 RRVFDENLSVLNSIAWNAMMAGYAQ----QGDQSTVLELFHLLEMRGF 299 (575)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~ 299 (575)
.+.|++.....+..++..|...|.. .++.++|.+.|++..+.|.
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 9999886677788888888888888 7889999999988887764
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0014 Score=65.67 Aligned_cols=116 Identities=15% Similarity=0.089 Sum_probs=85.6
Q ss_pred HHHHhccCChHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHh-----cCCCCch---h
Q 008183 346 ISAMGRAGRLEDAERIAMAM---------PFEPD-AAVWRALLSFSAIHGKADMASKMGKRLID-----INPYDDS---A 407 (575)
Q Consensus 346 i~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~---~ 407 (575)
+..+.+.|++++|+.++++. +..|+ ..+++.|..+|...|++++|+.+++++++ .+|.++. +
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44566778889998888765 12233 56789999999999999999999998885 4565554 6
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHhhCCCccCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHH
Q 008183 408 YVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECE 479 (575)
Q Consensus 408 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~ 479 (575)
++.|...|...|++++|..++++..+--.. .-...||...++...+.+...+|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 888999999999999999999877642100 112357777777777777666665
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0029 Score=48.01 Aligned_cols=68 Identities=19% Similarity=0.174 Sum_probs=60.4
Q ss_pred CCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCCC
Q 008183 369 PDAAVWRALLSFSAIHGK---ADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436 (575)
Q Consensus 369 p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 436 (575)
+|+..+..+..++...++ .++|..+++++++.+|.++.+...+...+...|++++|...|+++.+...
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 467788888888865555 79999999999999999999999999999999999999999999988754
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0017 Score=50.71 Aligned_cols=67 Identities=13% Similarity=0.046 Sum_probs=61.5
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCC
Q 008183 369 PDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435 (575)
Q Consensus 369 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 435 (575)
++...|..+...+...|++++|...++++++..|.++.++..+..+|...|++++|...+++..+..
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3567788899999999999999999999999999999999999999999999999999999987653
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00028 Score=59.16 Aligned_cols=85 Identities=16% Similarity=0.095 Sum_probs=66.0
Q ss_pred ccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHhcCCCCchhHHHHHHHHHhC
Q 008183 351 RAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGK----------ADMASKMGKRLIDINPYDDSAYVIVANVLSGV 418 (575)
Q Consensus 351 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 418 (575)
+.+.+++|.+.+++. .+.| +...|..+..++...++ +++|+..++++++++|.+..+|..+.++|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 445566666666655 3344 46666666666666654 56999999999999999999999999999987
Q ss_pred C-----------CchHHHHHHHHHhhCC
Q 008183 419 G-----------RWDEVAEVRKVMKDRR 435 (575)
Q Consensus 419 g-----------~~~~a~~~~~~m~~~~ 435 (575)
| ++++|.+.|++..+.+
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 5 8999999999888753
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0014 Score=65.65 Aligned_cols=83 Identities=10% Similarity=0.023 Sum_probs=66.9
Q ss_pred ccCChHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHh-----cCCCCch---hHHHHH
Q 008183 351 RAGRLEDAERIAMAM---------PFEPD-AAVWRALLSFSAIHGKADMASKMGKRLID-----INPYDDS---AYVIVA 412 (575)
Q Consensus 351 ~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~ 412 (575)
..|++++|+.++++. +..|+ ..+++.|..+|...|++++|+.+++++++ ++|.++. +++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457888888887665 23344 57789999999999999999999999885 4565554 688899
Q ss_pred HHHHhCCCchHHHHHHHHHhh
Q 008183 413 NVLSGVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 413 ~~~~~~g~~~~a~~~~~~m~~ 433 (575)
.+|...|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999987764
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0043 Score=62.04 Aligned_cols=93 Identities=13% Similarity=0.027 Sum_probs=72.3
Q ss_pred hcCCHHHHHHHHHHHHHhc--CCCCC----hhHHHHHHHHHhccCChHHHHHHHHhC---------CCCCC-HHHHHHHH
Q 008183 315 NAGLAGESEKWIERMKVRY--KLEPG----LEHYTCLISAMGRAGRLEDAERIAMAM---------PFEPD-AAVWRALL 378 (575)
Q Consensus 315 ~~g~~~~a~~~~~~m~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll 378 (575)
..|++++|..++++..... -+.|+ ..+++.|..+|...|++++|+.++++. +..|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3578888888887764432 23333 477888999999999999999888776 34565 66799999
Q ss_pred HHHHHcCChHHHHHHHHHHHh-----cCCCCchh
Q 008183 379 SFSAIHGKADMASKMGKRLID-----INPYDDSA 407 (575)
Q Consensus 379 ~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~ 407 (575)
..|...|++++|+.+++++++ ++|+++.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 999999999999999999885 56777654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0074 Score=60.37 Aligned_cols=100 Identities=14% Similarity=-0.018 Sum_probs=76.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhc--CCCCC----hhHHHHHHHHHhccCChHHHHHHHHhC---------CCCCC-HH
Q 008183 309 VLTALCNAGLAGESEKWIERMKVRY--KLEPG----LEHYTCLISAMGRAGRLEDAERIAMAM---------PFEPD-AA 372 (575)
Q Consensus 309 ll~a~~~~g~~~~a~~~~~~m~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~ 372 (575)
.+..+...|++++|..++++..... -+.|+ ..+++.|...|...|++++|+.++++. +..|+ ..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 3455667788999998888774332 12333 467888899999999999999888766 34565 66
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHh-----cCCCCchhH
Q 008183 373 VWRALLSFSAIHGKADMASKMGKRLID-----INPYDDSAY 408 (575)
Q Consensus 373 ~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~ 408 (575)
+++.|...|...|++++|+.+++++++ ++|+++.+-
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 413 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIE 413 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 799999999999999999999999885 678777653
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0024 Score=53.46 Aligned_cols=97 Identities=16% Similarity=0.068 Sum_probs=64.9
Q ss_pred hcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCC----------HHHHHHHHhhhCC--CCChhhHHHHHHHHHH
Q 008183 213 ELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI----------VSDARRVFDENLS--VLNSIAWNAMMAGYAQ 280 (575)
Q Consensus 213 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~--~~~~~~~~~li~~~~~ 280 (575)
+.+.+++|.+.++..++.. +.+...++.+..++...++ +++|+..|++++. +.+..+|+.+..+|..
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 4455666666666666654 4566666666666666655 4578888877554 4566778888888877
Q ss_pred cC-----------ChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008183 281 QG-----------DQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312 (575)
Q Consensus 281 ~g-----------~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 312 (575)
.| ++++|++.|++..+ +.|+...|...+..
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 64 78888888888877 46666666555543
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0034 Score=46.85 Aligned_cols=65 Identities=20% Similarity=0.288 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 370 DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 370 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
+...|..+...+...|++++|...+++.++..|.++.++..+..+|...|++++|...+++..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 35678888899999999999999999999999999999999999999999999999999988764
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0042 Score=49.07 Aligned_cols=61 Identities=18% Similarity=0.187 Sum_probs=28.0
Q ss_pred chhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 008183 235 NVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLE 295 (575)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 295 (575)
+...+..+...|...|++++|.+.|++.+. +.+...|..+...|...|++++|...|++..
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444555555555555555544222 2233344444444444444444444444443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.075 Score=55.25 Aligned_cols=128 Identities=10% Similarity=-0.049 Sum_probs=63.2
Q ss_pred chHHHHHHHHhHHCCCCcCH-HHHHHHHHHHHhccc----------HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccC
Q 008183 182 LVDSLSVFADMRSSDVGSTM-YCVSGALRAAAELAA----------MEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250 (575)
Q Consensus 182 ~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~----------~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 250 (575)
.++|++.++++... .|+. ..|+.--.++...++ ++++...++.+++.. +-+..+|+.-.-.+.+.|
T Consensus 45 ~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 45 DESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp SHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 34556666666553 3332 233333333333333 555555555555543 344555555555555555
Q ss_pred --CHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008183 251 --IVSDARRVFDENLS--VLNSIAWNAMMAGYAQQG-DQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313 (575)
Q Consensus 251 --~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 313 (575)
+++++.+.++++++ +.|..+|+.-...+.+.| .++++++.+.++.+..+. |...|+.....+
T Consensus 122 ~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll 188 (567)
T 1dce_A 122 EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLL 188 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHH
Confidence 44666666655333 445555555555555555 555555555555544322 444444443333
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.74 E-value=0.15 Score=40.55 Aligned_cols=141 Identities=12% Similarity=0.142 Sum_probs=104.9
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHH
Q 008183 278 YAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLED 357 (575)
Q Consensus 278 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 357 (575)
+.-.|..++..++..+.... .+..-||.+|--....-+-+-..+.++.+-.-+ | ...+|++..
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiF----D----------is~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYF----D----------LDKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGS----C----------GGGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhc----C----------cHhhhcHHH
Confidence 44567788888888777664 255566666655555666666677776663222 2 235677777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCCCc
Q 008183 358 AERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVR 437 (575)
Q Consensus 358 A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 437 (575)
....+-.++ .+.......+......|+-++-.+++..++..+++++....-+.++|.+.|+..+|.+++.+..++|++
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 777777664 344556677888899999999999999987777888999999999999999999999999999999986
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0088 Score=45.91 Aligned_cols=61 Identities=11% Similarity=0.021 Sum_probs=29.7
Q ss_pred chhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 008183 235 NVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLE 295 (575)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 295 (575)
+...+..+...|.+.|++++|.+.|++++. +.+...|..+..+|...|++++|++.|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444555555555555555555554332 2234445555555555555555555554443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.61 E-value=0.074 Score=51.12 Aligned_cols=67 Identities=10% Similarity=-0.010 Sum_probs=41.8
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 008183 338 GLEHYTCLISAMGRAGRLEDAERIAMAM-PFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYD 404 (575)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 404 (575)
+..+|.++...+...|++++|...+++. .+.|+...|..+...+.-.|++++|.+.++++..++|..
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 3555666555555556666666666665 344666666556666666666777766666666666644
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.31 E-value=0.13 Score=55.98 Aligned_cols=102 Identities=11% Similarity=0.089 Sum_probs=58.8
Q ss_pred HHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHH
Q 008183 143 HFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRV 222 (575)
Q Consensus 143 ~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 222 (575)
......|++++|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...++.+...+
T Consensus 660 ~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~ 728 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVT 728 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHH
T ss_pred ehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHH
Confidence 34456677777777766553 456777777777777777777777777643 3444444444555555444
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhh
Q 008183 223 IHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDE 261 (575)
Q Consensus 223 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 261 (575)
+-+.....| -++....+|.+.|++++|.+++.+
T Consensus 729 ~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 729 LAKDAETTG------KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHcC------chHHHHHHHHHcCCHHHHHHHHHH
Confidence 444444433 123334445555666666555554
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.024 Score=43.04 Aligned_cols=64 Identities=17% Similarity=0.152 Sum_probs=50.5
Q ss_pred HHHHHhccCChHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhH
Q 008183 345 LISAMGRAGRLEDAERIAMAM-PFEP-DAA-VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAY 408 (575)
Q Consensus 345 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 408 (575)
....+.+.|++++|...|++. ...| +.. .|..+..++...|++++|...++++++.+|.+..++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 345567788888888888776 3345 466 888888888899999999999999999999887765
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.013 Score=44.56 Aligned_cols=59 Identities=14% Similarity=0.268 Sum_probs=53.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCch-hHHHHHHHHHhCCCchHHHHHHHHHhhCC
Q 008183 377 LLSFSAIHGKADMASKMGKRLIDINPYDDS-AYVIVANVLSGVGRWDEVAEVRKVMKDRR 435 (575)
Q Consensus 377 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 435 (575)
....+...|++++|...++++++.+|.++. ++..+..+|...|++++|...+++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 455677899999999999999999999999 99999999999999999999999988654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.10 E-value=0.12 Score=56.45 Aligned_cols=102 Identities=13% Similarity=0.088 Sum_probs=53.7
Q ss_pred HHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008183 245 GYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEK 324 (575)
Q Consensus 245 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 324 (575)
....+|++++|.++.+. + .+...|..+...+.+.|+++.|.+.|..+.. |..+...+...|+.+...+
T Consensus 661 ~~l~~~~~~~A~~~~~~-~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~ 728 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTD-E--SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVT 728 (814)
T ss_dssp HHHHHTCHHHHHHHHTT-C--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHH
T ss_pred hhhhcCCHHHHHHHHHh-h--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHH
Confidence 34556777777776655 3 3445677777777777777777777766542 1123333333555554444
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC
Q 008183 325 WIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM 365 (575)
Q Consensus 325 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (575)
+-+.. ...| -++.-...|.+.|++++|.+++.++
T Consensus 729 ~~~~a-~~~~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 729 LAKDA-ETTG------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHH-HHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHH-HHcC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 33322 2111 1223333445556666666655554
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.59 Score=39.59 Aligned_cols=102 Identities=8% Similarity=0.016 Sum_probs=70.9
Q ss_pred HHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHH
Q 008183 143 HFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRV 222 (575)
Q Consensus 143 ~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 222 (575)
+...++|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+... |..+.-.|...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3445788999998888776 3667899999999999999999999888754 5555555666677666555
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhh
Q 008183 223 IHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDE 261 (575)
Q Consensus 223 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 261 (575)
+-+.....| -++.....+.-.|+++++.++|.+
T Consensus 82 la~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 82 MQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 555444443 134444455566777777777766
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=95.52 E-value=0.32 Score=46.74 Aligned_cols=73 Identities=11% Similarity=0.022 Sum_probs=43.5
Q ss_pred CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHH
Q 008183 265 VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHY 342 (575)
Q Consensus 265 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~ 342 (575)
+.+...|.++...+...|++++|...+++....+ |+...|..+-..+.-.|+.++|.+.+++.. .+.|...+|
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Al---rL~P~~~t~ 346 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAF---NLRPGANTL 346 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHSCSHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCCcChH
Confidence 4455566665555555667777777776666654 566555555555666677777766666542 234554443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.42 E-value=0.098 Score=43.19 Aligned_cols=65 Identities=3% Similarity=-0.122 Sum_probs=43.8
Q ss_pred CCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcC-C-CCchhHHHHHHHHHhCCCchHHHHHHHHHhh
Q 008183 369 PDAAVWRALLSFSAIHG---KADMASKMGKRLIDIN-P-YDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 369 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 433 (575)
++..+.-.+..++.+.+ +.+++..+++.+.+.+ | .+...+..|.-+|.+.|++++|.+.++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 55666666666666666 4557777777777766 4 2344666677777777777777777777765
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.15 E-value=0.11 Score=40.00 Aligned_cols=71 Identities=17% Similarity=0.038 Sum_probs=49.7
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHH
Q 008183 340 EHYTCLISAMGRAGRLEDAERIAMAM-----P----FEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVI 410 (575)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m-----~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 410 (575)
.-+-.|...+.+.|+++.|..+|+.. + -.+....+..|..++.+.|+++.|...++++.++.|.+..+...
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 33445555555666666666555543 0 12346778889999999999999999999999999988765433
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=94.93 E-value=0.13 Score=38.74 Aligned_cols=69 Identities=12% Similarity=0.026 Sum_probs=52.4
Q ss_pred CChhHHHHHHHHHhccCC---hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCc
Q 008183 337 PGLEHYTCLISAMGRAGR---LEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDD 405 (575)
Q Consensus 337 p~~~~~~~li~~~~~~g~---~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 405 (575)
.+...+..+..++...++ .++|..+|++. ...| ++..+..+...+...|++++|...|+++++.+|.++
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 346666777776654443 68888888877 4456 477888888888999999999999999999888743
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.82 E-value=0.1 Score=48.06 Aligned_cols=86 Identities=16% Similarity=0.096 Sum_probs=68.5
Q ss_pred hHHHHHHHHhC-CCCCC---HHHHHHHHHHHHH-----cCChHHHHHHHHHHHhcCCCC-chhHHHHHHHHHhC-CCchH
Q 008183 355 LEDAERIAMAM-PFEPD---AAVWRALLSFSAI-----HGKADMASKMGKRLIDINPYD-DSAYVIVANVLSGV-GRWDE 423 (575)
Q Consensus 355 ~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 423 (575)
..+|...+++. .+.|+ ...|..|...|.. .|+.++|++.|+++++++|.. ..++......++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34555555554 45666 5678888888888 499999999999999999964 88999999999885 99999
Q ss_pred HHHHHHHHhhCCCccCC
Q 008183 424 VAEVRKVMKDRRVRKEG 440 (575)
Q Consensus 424 a~~~~~~m~~~~~~~~~ 440 (575)
+.+.+++.........|
T Consensus 259 a~~~L~kAL~a~p~~~P 275 (301)
T 3u64_A 259 FDEALDRALAIDPESVP 275 (301)
T ss_dssp HHHHHHHHHHCCGGGCS
T ss_pred HHHHHHHHHcCCCCCCC
Confidence 99999999887665334
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=93.95 E-value=6.9 Score=40.70 Aligned_cols=251 Identities=10% Similarity=0.028 Sum_probs=118.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhccc
Q 008183 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAA 216 (575)
Q Consensus 137 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 216 (575)
.-+.-+..+++.+++......+.. +..+...-.....+....|+..+|......+-..|- ........++..+.+.|.
T Consensus 74 Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~g~ 151 (618)
T 1qsa_A 74 LQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGK 151 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHCCC
Confidence 334455556666777776665554 322444444455666667776666666666544432 222234444444443332
Q ss_pred HHH--HHHHHHHHHHhC-----------CCCch-hHHHHHHHHHHccCCHHHHHHHHhhhCCCCChh---hHHHHHHHHH
Q 008183 217 MEQ--CRVIHGHAVVSG-----------LDRNV-IVGTGLIDGYGKAGIVSDARRVFDENLSVLNSI---AWNAMMAGYA 279 (575)
Q Consensus 217 ~~~--a~~~~~~~~~~g-----------~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~li~~~~ 279 (575)
+.. ..+=+..+...| ++++. .....++..+.+-..+ ...... . .++.. .+..-+.-+.
T Consensus 152 lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~---~~~~~~-~-~~~~~~~~~~~~~~~rla 226 (618)
T 1qsa_A 152 QDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTV---LTFART-T-GATDFTRQMAAVAFASVA 226 (618)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGH---HHHHHH-S-CCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhH---HHHHhc-c-CCChhhHHHHHHHHHHHH
Confidence 211 111111111111 11221 1222333333322222 122221 1 11111 1111222333
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH----HHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCh
Q 008183 280 QQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT----ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRL 355 (575)
Q Consensus 280 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~----a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 355 (575)
+ .+++.|..+|....+.+. .+......+-. .....+...++...+...... .++.....-.+..-.+.|++
T Consensus 227 r-~d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~ 301 (618)
T 1qsa_A 227 R-QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDR 301 (618)
T ss_dssp H-HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCH
T ss_pred h-cCHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCH
Confidence 3 377888888888765432 23322222222 223334244555556554221 23333333344444567899
Q ss_pred HHHHHHHHhCCCCC-C-HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008183 356 EDAERIAMAMPFEP-D-AAVWRALLSFSAIHGKADMASKMGKRLID 399 (575)
Q Consensus 356 ~~A~~~~~~m~~~p-~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 399 (575)
+.|...|+.|+-.+ + ....-=+..++...|+.++|..+++.+.+
T Consensus 302 ~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 302 RGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99999998885332 2 32223345566778888888888888865
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=93.58 E-value=4.8 Score=37.66 Aligned_cols=168 Identities=9% Similarity=0.046 Sum_probs=102.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHH----HHHHHHcCCCCCHHHHHHHHHHHH
Q 008183 239 GTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLEL----FHLLEMRGFAPDEYSFLAVLTALC 314 (575)
Q Consensus 239 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l----~~~m~~~g~~p~~~t~~~ll~a~~ 314 (575)
|.++..=|.+.+++++|.+++.. -...+.++|+...|-++ .+-..+.+++++......++..+.
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~------------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQ------------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH------------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHH------------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 44555668888999999998876 33456677887777665 444556689999988888887765
Q ss_pred hcCCHH-HHHHHHHHHH---HhcCC--CCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---C
Q 008183 315 NAGLAG-ESEKWIERMK---VRYKL--EPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIH---G 385 (575)
Q Consensus 315 ~~g~~~-~a~~~~~~m~---~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~---g 385 (575)
....-+ .=.++.+.+. .+.|- .-+......+...|.+.|++.+|+..|- .+-.-|...+..++.-+... |
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i-~~~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM-LGTHDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH-hCCCccHHHHHHHHHHHHHhcCCC
Confidence 532111 1122222221 22222 1256777888889999999999998775 32111355555555444443 4
Q ss_pred ChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhh
Q 008183 386 KADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 386 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 433 (575)
...++--+.. ..+--|.-.|+...|..+++...+
T Consensus 183 ~~~e~dlf~~--------------RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 183 EDSTVAEFFS--------------RLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp CHHHHHHHHH--------------HHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred CcchHHHHHH--------------HHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3333322222 223346677888999999887653
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.58 E-value=0.3 Score=40.24 Aligned_cols=71 Identities=11% Similarity=-0.005 Sum_probs=45.8
Q ss_pred CChhHHHHHHHHHhccC---ChHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchh
Q 008183 337 PGLEHYTCLISAMGRAG---RLEDAERIAMAM-PFE-P--DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSA 407 (575)
Q Consensus 337 p~~~~~~~li~~~~~~g---~~~~A~~~~~~m-~~~-p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 407 (575)
++..+.-.+.-++.+.+ +++++..+|++. ... | ....+-.|.-++.+.|++++|.+.++.+++.+|.|..+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 34444444444555554 344555555544 112 3 24455667778899999999999999999999987543
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=93.16 E-value=4.2e-05 Score=74.83 Aligned_cols=222 Identities=12% Similarity=0.088 Sum_probs=119.1
Q ss_pred chhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHh
Q 008183 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAE 213 (575)
Q Consensus 134 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 213 (575)
.+.+|+.|..++.+.|.+.+|.+-| ++..|...|..+|.+..+.|.+++-++.+...++..-.| ..=+.++-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHh
Confidence 4457777777777788877776655 334567778888888888888888888776665543223 333466777777
Q ss_pred cccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHH
Q 008183 214 LAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHL 293 (575)
Q Consensus 214 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 293 (575)
.+++.+-++++ -.||..-...+.+-|...|.++.|.-+|.. ++ -|.-|...+.+.|++..|.+.-++
T Consensus 129 ~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~-is-----N~akLAstLV~L~~yq~AVdaArK 195 (624)
T 3lvg_A 129 TNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNN-VS-----NFGRLASTLVHLGEYQAAVDGARK 195 (624)
T ss_dssp SCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGG-SC-----CCTTTSSSSSSCSGGGSSTTTTTT
T ss_pred hCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHh-Cc-----cHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77655433332 135555566667777777777777766665 33 111222223333333333322111
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CC-CCCH
Q 008183 294 LEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PF-EPDA 371 (575)
Q Consensus 294 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~ 371 (575)
.-+..||-.+-.+|...+.+..|...--.+.. .| .....++.-|-+.|.++|-..+++.- ++ +...
T Consensus 196 ------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv----ha--deL~elv~~YE~~G~f~ELIsLlEaglglErAHm 263 (624)
T 3lvg_A 196 ------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV----HA--DELEELINYYQDRGYFEELITMLEAALGLERAHM 263 (624)
T ss_dssp ------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC----CS--SCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCH
T ss_pred ------cCChhHHHHHHHHHhCchHHHHHHHhcchhcc----cH--HHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhH
Confidence 12334555555555555554444333222211 11 11223444555556665555555543 32 2345
Q ss_pred HHHHHHHHHHHHc
Q 008183 372 AVWRALLSFSAIH 384 (575)
Q Consensus 372 ~~~~~ll~~~~~~ 384 (575)
-.|+-|.-.|++.
T Consensus 264 GmFTELaILYsKY 276 (624)
T 3lvg_A 264 GMFTELAILYSKF 276 (624)
T ss_dssp HHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhc
Confidence 5555555555544
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=92.40 E-value=7.4 Score=36.68 Aligned_cols=167 Identities=12% Similarity=0.043 Sum_probs=105.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHH----HHHHHcCCCCCHHHHHHHHHHHH
Q 008183 239 GTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELF----HLLEMRGFAPDEYSFLAVLTALC 314 (575)
Q Consensus 239 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~----~~m~~~g~~p~~~t~~~ll~a~~ 314 (575)
|.++..=|.+.+++++|.+++.. -...+.+.|+...|-++- +-..+.++++|..+...|+..+.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~------------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS------------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH------------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH------------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 34455558889999999998876 234566778877766655 55566789999988888888776
Q ss_pred hcCC--HHHHHHHHHHHH---HhcCC--CCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh
Q 008183 315 NAGL--AGESEKWIERMK---VRYKL--EPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKA 387 (575)
Q Consensus 315 ~~g~--~~~a~~~~~~m~---~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~ 387 (575)
.... .+. ..+.+.+. .+.|- .-|......+...|.+.+++.+|+..|- .+..+.+..+..++.-+...+..
T Consensus 106 ~~~~~~p~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~~ 183 (336)
T 3lpz_A 106 LFQPGEPVR-KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDES 183 (336)
T ss_dssp TSCTTCHHH-HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSCG
T ss_pred hCCCCCcHH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcCC
Confidence 6543 221 22222221 22232 2246677788899999999999998884 34344456666665555444332
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhh
Q 008183 388 DMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 388 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 433 (575)
.++--+ ....+--|.-.++...|..+++...+
T Consensus 184 ~e~dlf--------------iaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 184 HTAPLY--------------CARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp GGHHHH--------------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccHHHH--------------HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 222211 12234456777888999888776654
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=91.97 E-value=0.67 Score=35.38 Aligned_cols=65 Identities=9% Similarity=-0.081 Sum_probs=53.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------CCCchhHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 370 DAAVWRALLSFSAIHGKADMASKMGKRLIDIN-------PYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 370 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
+..-...|...+...++++.|...++.+++.. +....++..|..+|.+.|+++.|...+++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44556678888999999999999999998742 234557899999999999999999999988763
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=91.69 E-value=2.4 Score=33.83 Aligned_cols=85 Identities=4% Similarity=-0.119 Sum_probs=62.7
Q ss_pred hCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHH
Q 008183 147 RFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGH 226 (575)
Q Consensus 147 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 226 (575)
.||++......+-.+.. +....+..+......|.-++-.+++..+.. +.+|++.....+..||.+.|+..++.+++.+
T Consensus 73 ~C~NlKrVi~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~ 150 (172)
T 1wy6_A 73 KCQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIE 150 (172)
T ss_dssp GCSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 45666665555544432 445566677888888988888888888543 4578888888888999999999999999888
Q ss_pred HHHhCCC
Q 008183 227 AVVSGLD 233 (575)
Q Consensus 227 ~~~~g~~ 233 (575)
+.+.|++
T Consensus 151 AC~kG~k 157 (172)
T 1wy6_A 151 ACKKGEK 157 (172)
T ss_dssp HHHTTCH
T ss_pred HHHhhhH
Confidence 8888853
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=91.54 E-value=2.6 Score=34.35 Aligned_cols=115 Identities=11% Similarity=0.139 Sum_probs=63.8
Q ss_pred hCCCCChhhHHHHHHHHHHcCCh------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 008183 262 NLSVLNSIAWNAMMAGYAQQGDQ------STVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKL 335 (575)
Q Consensus 262 ~~~~~~~~~~~~li~~~~~~g~~------~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 335 (575)
+|.+.|..+|-..+...-+.|++ ++..++|++.... ++|+.. +.++.=..++-..
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~------------~~wrrYI~LWIrY------ 67 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKY------------GQNESFARIQVRF------ 67 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGG------------TTCHHHHHHHHHH------
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCcccc------------ccHHHHHHHHHHH------
Confidence 45567777777777777777777 6667777766654 555420 1111111111100
Q ss_pred CCChhHHHHHHHHHhccCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchh
Q 008183 336 EPGLEHYTCLISAMGRAGRLEDAERIAMAM---PFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSA 407 (575)
Q Consensus 336 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 407 (575)
.. +...+++++|.++|+.+ .-+- ...|.....--.++|+++.|.+++.+.+.+.|.+...
T Consensus 68 -------A~----~~ei~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 68 -------AE----LKAIQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp -------HH----HHHHHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred -------HH----HHHhcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 00 01124555555555554 1111 5666666666677888888888888888888765443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.35 E-value=5.9 Score=33.42 Aligned_cols=130 Identities=15% Similarity=0.083 Sum_probs=78.9
Q ss_pred HHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008183 244 DGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESE 323 (575)
Q Consensus 244 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 323 (575)
+...++|+++.|.++.+. + .+...|..|.......|+++-|.+.|..... |..+.-.|.-.|+.+.-.
T Consensus 13 ~LAL~lg~l~~A~e~a~~-l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKK-L--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHTTCHHHHHHHHHH-H--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHhcCCHHHHHHHHHH-h--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 344567778888777766 3 3566788888888888888888887776543 122333345566666655
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008183 324 KWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLI 398 (575)
Q Consensus 324 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 398 (575)
.+-+.. ...| -++.-...+.-.|+++++.++|.+.+.-|.... ....+|-.+.|.++.+.+-
T Consensus 81 kla~iA-~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~------~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 81 KMQNIA-QTRE------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA------VAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHH-HHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH------HHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHH-HHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH------HHHHcCcHHHHHHHHHHhC
Confidence 543322 2211 234444556667888888888888763332221 1234677777888876653
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=90.94 E-value=0.95 Score=41.72 Aligned_cols=88 Identities=10% Similarity=-0.017 Sum_probs=58.9
Q ss_pred cHHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHc-----cCCHHHHHHHHhhhCC-CC--ChhhHHHHHHHHHHc-CC
Q 008183 216 AMEQCRVIHGHAVVSGLDRN---VIVGTGLIDGYGK-----AGIVSDARRVFDENLS-VL--NSIAWNAMMAGYAQQ-GD 283 (575)
Q Consensus 216 ~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~-~~--~~~~~~~li~~~~~~-g~ 283 (575)
....++..+++.++. .|+ ...|..|...|.+ .|+.++|.+.|++++. .| +..++......+++. |+
T Consensus 178 ~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 178 TVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred hHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 345556666666665 344 5577777777877 4788888888887555 33 366666677777764 77
Q ss_pred hHHHHHHHHHHHHcCCC--CCHHH
Q 008183 284 QSTVLELFHLLEMRGFA--PDEYS 305 (575)
Q Consensus 284 ~~~A~~l~~~m~~~g~~--p~~~t 305 (575)
.+++.+.+++....... |+...
T Consensus 256 ~~~a~~~L~kAL~a~p~~~P~~~l 279 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESVPHNKL 279 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGCSSCHH
T ss_pred HHHHHHHHHHHHcCCCCCCCChhH
Confidence 88888888887776655 55433
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=90.50 E-value=0.00087 Score=65.77 Aligned_cols=259 Identities=13% Similarity=0.102 Sum_probs=131.7
Q ss_pred cccHHHHHHHHhHcCCChHHHHHHHccCCCCChhhHHHHHHHHhcCch--HHHHHHHHhhCCCCCcCCChhhHHHHHHHH
Q 008183 32 DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL--SLNIFLSMLRHPTLSFLPNQRTLASLFKTC 109 (575)
Q Consensus 32 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~--a~~~~~~m~~~~~~~~~p~~~t~~~ll~~~ 109 (575)
.+.+|..|-.++.+.+++.+|.+.|=+ ..|+..|..+|.+..+.|. .+--|-.|.+.. .-+...=+.++-++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~----~ke~~IDteLi~ay 126 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK----ARESYVETELIFAL 126 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT----CCSTTTTHHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH----hcccccHHHHHHHH
Confidence 344555555555555555555554422 2344445555555555555 333333333321 11222223444455
Q ss_pred hhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHH
Q 008183 110 ASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVF 189 (575)
Q Consensus 110 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~ 189 (575)
++.+ ++.+-+.+. -.|+..-...+-+-+...|.++.|.-+|..+.. |.-|...+++.|++..|.+.-
T Consensus 127 Ak~~-rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN-----~akLAstLV~L~~yq~AVdaA 193 (624)
T 3lvg_A 127 AKTN-RLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGA 193 (624)
T ss_dssp HTSC-SSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-----CTTTSSSSSSCSGGGSSTTTT
T ss_pred HhhC-cHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-----HHHHHHHHHHHHHHHHHHHHH
Confidence 5544 322211111 123333333444444455555555444444332 333333344445544443321
Q ss_pred HHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCC
Q 008183 190 ADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLN 267 (575)
Q Consensus 190 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~ 267 (575)
++ .-+..||-.+-.+|...+.+..|...--.++- ...-...++..|-..|.+++-..+++..+. ...
T Consensus 194 rK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEaglglErAH 262 (624)
T 3lvg_A 194 RK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAALGLERAH 262 (624)
T ss_dssp TT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCC
T ss_pred Hh------cCChhHHHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchh
Confidence 11 23556888888888888887766543323322 122233467778889999998888887553 566
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008183 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMR-GFAPDEYSFLAVLTALCNAGLAGESEKWIER 328 (575)
Q Consensus 268 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 328 (575)
.-.|+-|.-.|++- ++++..+-++..-.+ +++ -+|++|.+...+.++.-++..
T Consensus 263 mGmFTELaILYsKY-~PeKlmEHlklf~sriNip-------KviracE~ahLW~ElvfLY~~ 316 (624)
T 3lvg_A 263 MGMFTELAILYSKF-KPQKMREHLELFWSRVNIP-------KVLRAAEQAHLWAELVFLYDK 316 (624)
T ss_dssp HHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCT-------TTHHHHTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHH-------HHHHHHHHHhhHHHHHHHHhc
Confidence 77788888778776 455555544432221 221 356666666666666555543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=90.29 E-value=0.65 Score=45.53 Aligned_cols=68 Identities=13% Similarity=0.077 Sum_probs=56.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHh-----hCCCccCCc
Q 008183 374 WRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK-----DRRVRKEGG 441 (575)
Q Consensus 374 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~~~~~~~~ 441 (575)
...++.++...|+.+++...+..+...+|.+...|..|+.+|.++|+..+|.+.|+.+. +-|+.|.+.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 44566777888999999999999999999988899999999999999999999888775 347777654
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.23 E-value=3.1 Score=44.17 Aligned_cols=54 Identities=9% Similarity=0.072 Sum_probs=49.1
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHh
Q 008183 379 SFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432 (575)
Q Consensus 379 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 432 (575)
.-|...|+++.|+++.++++..-|.+..+|..|..+|...|+|+.|.-.+..+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 446678999999999999999999999999999999999999999999988774
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=90.22 E-value=1.8 Score=34.29 Aligned_cols=88 Identities=13% Similarity=-0.050 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHHHcCChHH
Q 008183 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLED---AERIAMAM-PFE-P--DAAVWRALLSFSAIHGKADM 389 (575)
Q Consensus 317 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~m-~~~-p--~~~~~~~ll~~~~~~g~~~~ 389 (575)
..+..+.+-|...... +. |+..+--.+.-++.+.....+ +..+++.. ... | .....-.|.-++.+.|+++.
T Consensus 15 ~~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 3444445555444222 22 455555555556666655544 55555554 212 3 12333445556666677777
Q ss_pred HHHHHHHHHhcCCCCch
Q 008183 390 ASKMGKRLIDINPYDDS 406 (575)
Q Consensus 390 a~~~~~~~~~~~p~~~~ 406 (575)
|.+.++.+++.+|.|..
T Consensus 93 A~~~~~~lL~~eP~n~Q 109 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQ 109 (126)
T ss_dssp HHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHhCCCCHH
Confidence 77777777777766643
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=88.72 E-value=3 Score=31.26 Aligned_cols=63 Identities=17% Similarity=0.079 Sum_probs=49.9
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 008183 283 DQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLIS 347 (575)
Q Consensus 283 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 347 (575)
+.-+..+-++.+....+.|+.....+.+.||.+.+++..|.++|+.++.+.+- ...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~--~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP--HKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC--chhhHHHHHH
Confidence 34456666677777789999999999999999999999999999988766543 3556777664
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=88.05 E-value=4.6 Score=31.88 Aligned_cols=90 Identities=12% Similarity=0.056 Sum_probs=55.9
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHhcCCCC--ChhHHHHHHHHHhcc
Q 008183 278 YAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGE---SEKWIERMKVRYKLEP--GLEHYTCLISAMGRA 352 (575)
Q Consensus 278 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~---a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~ 352 (575)
.........+.+-|.+....|. |+..+-..+..++.+...... +..+++.+... + .| .....-.|.-++.+.
T Consensus 11 ~~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-~-~p~~~Rd~lY~LAvg~ykl 87 (126)
T 1nzn_A 11 LVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRL 87 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-S-CHHHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CcchHHHHHHHHHHHHHHh
Confidence 3334445556666666655554 566666667777777776555 78888776332 1 23 233344556678888
Q ss_pred CChHHHHHHHHhC-CCCCC
Q 008183 353 GRLEDAERIAMAM-PFEPD 370 (575)
Q Consensus 353 g~~~~A~~~~~~m-~~~p~ 370 (575)
|++++|.+.++.+ .++|+
T Consensus 88 g~Y~~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 88 KEYEKALKYVRGLLQTEPQ 106 (126)
T ss_dssp TCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHHHHHHHHHhCCC
Confidence 8888888888776 44553
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=87.60 E-value=19 Score=33.91 Aligned_cols=168 Identities=10% Similarity=-0.043 Sum_probs=104.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHH----HHhHHCCCCcCHHHHHHHHHHHH
Q 008183 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVF----ADMRSSDVGSTMYCVSGALRAAA 212 (575)
Q Consensus 137 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~~~~ 212 (575)
.|.++..=|.+.+++++|.+++-. -...+.+.|+...|-++- +...+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 345566668899999999998643 233456677776655544 45556788888888877777776
Q ss_pred hccc--HH---HHHHHHHHHHHhC--CCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChH
Q 008183 213 ELAA--ME---QCRVIHGHAVVSG--LDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQS 285 (575)
Q Consensus 213 ~~~~--~~---~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 285 (575)
.... .+ -..+...+-.+.| -.-|+.....+...|.+.+++.+|+.-|-- -..+....+..|+.-+...+...
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~il-g~~~s~~~~a~mL~ew~~~~~~~ 184 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVL-GTKESPEVLARMEYEWYKQDESH 184 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTT-SCTTHHHHHHHHHHHHHHTSCGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHh-cCCchHHHHHHHHHHHHHhcCCc
Confidence 5542 11 2223333334444 234677888899999999999999999853 33333456655555554444322
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008183 286 TVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV 331 (575)
Q Consensus 286 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 331 (575)
+ +|...-..++. |...+++..|..+++....
T Consensus 185 e--------------~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 T--------------APLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp G--------------HHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred c--------------HHHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 1 22233333333 4556788888887776643
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=86.88 E-value=14 Score=41.71 Aligned_cols=164 Identities=10% Similarity=0.009 Sum_probs=96.1
Q ss_pred HHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHH
Q 008183 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQ 219 (575)
Q Consensus 140 ~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 219 (575)
.++..+.+.+..+.|.++....++ +..+--.+..+|...|++++|.+.|.+.- .|+..+.... .....
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa-~~~~~~~~l~----------~~~~~ 884 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQF----------AVLRE 884 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CSCTTCCCSC----------SSHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHh-hhhcccchhh----------hhhcc
Confidence 344455556666666665554443 43333445566777888888888887652 2222211100 00000
Q ss_pred HHHHHHHHHHhC--CCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC---CCCh----hhHHHHHHHHHHcCChHHHHHH
Q 008183 220 CRVIHGHAVVSG--LDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS---VLNS----IAWNAMMAGYAQQGDQSTVLEL 290 (575)
Q Consensus 220 a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~----~~~~~li~~~~~~g~~~~A~~l 290 (575)
...+.... ...-..-|..++..+-+.|.++.+.++-..++. +.+. ..|..+..++...|++++|...
T Consensus 885 ----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~a 960 (1139)
T 4fhn_B 885 ----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVA 960 (1139)
T ss_dssp ----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHH
T ss_pred ----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHH
Confidence 00111110 011234567788888888888887776654333 2221 2588899999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 008183 291 FHLLEMRGFAPDEYSFLAVLTALCNAGLAGE 321 (575)
Q Consensus 291 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 321 (575)
+-.+.....+ ...+..|+...+..|..+.
T Consensus 961 L~~~pd~~~r--~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 961 LMVLSTTPLK--KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHSSSC--HHHHHHHHHHHHHHCCHHH
T ss_pred HHhCCCHHHH--HHHHHHHHHHHHhCCChhh
Confidence 9888765443 5667777777777666543
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=86.39 E-value=1.7 Score=35.50 Aligned_cols=55 Identities=9% Similarity=-0.107 Sum_probs=45.5
Q ss_pred HcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCCCc
Q 008183 383 IHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVR 437 (575)
Q Consensus 383 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 437 (575)
..+|.++|.++|+.+++....-...|......-.+.|+...|.+++..-...+.+
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 3489999999999998875434567888888889999999999999988876654
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=84.49 E-value=26 Score=32.64 Aligned_cols=169 Identities=14% Similarity=0.062 Sum_probs=105.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHH----HHHhHHCCCCcCHHHHHHHHHHHH
Q 008183 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSV----FADMRSSDVGSTMYCVSGALRAAA 212 (575)
Q Consensus 137 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~~ 212 (575)
.|.++..=|.+.+++++|.+++.. -...+.+.|+...|-++ .+...+.++++|......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 345566778888999999988654 23345667777666554 455566788888888887777765
Q ss_pred hcc-----cHHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHc---C
Q 008183 213 ELA-----AMEQCRVIHGHAVVSGL--DRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQ---G 282 (575)
Q Consensus 213 ~~~-----~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~---g 282 (575)
... +.+-..+....-.+.|- .-|+.....+...|.+.|++.+|+.-|-- ....|...+..|+.-+... |
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~-~~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML-GTHDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh-CCCccHHHHHHHHHHHHHhcCCC
Confidence 532 22233344444444432 23678888999999999999999998864 3222455555555544444 4
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008183 283 DQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVR 332 (575)
Q Consensus 283 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 332 (575)
...++ |...-..++. |.-.+++..|..+++....+
T Consensus 183 ~~~e~--------------dlf~~RaVL~-yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 183 EDSTV--------------AEFFSRLVFN-YLFISNISFAHESKDIFLER 217 (312)
T ss_dssp CHHHH--------------HHHHHHHHHH-HHHTTBHHHHHHHHHHHHHH
T ss_pred CcchH--------------HHHHHHHHHH-HHHhcCHHHHHHHHHHHHHH
Confidence 43332 1122222332 44568888898888877544
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=84.43 E-value=15 Score=29.67 Aligned_cols=67 Identities=3% Similarity=-0.100 Sum_probs=41.8
Q ss_pred CCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCCCch-hHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 368 EPDAAVWRALLSFSAIHGK---ADMASKMGKRLIDINPYDDS-AYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 368 ~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
.|+..+--.+..++.+..+ ..++..+++.+...+|.... ....|.-++.+.|++++|.+..+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4555554455555555543 44566777777776664333 4455677777778888877777777653
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=82.64 E-value=8.9 Score=28.76 Aligned_cols=62 Identities=13% Similarity=0.018 Sum_probs=46.6
Q ss_pred chHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 008183 182 LVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLID 244 (575)
Q Consensus 182 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 244 (575)
.-+..+-++.+-...+.|++....+.|++|.+.+++..|.++++-+...- .....+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 34566667777777889999999999999999999999999988876542 333456666654
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=82.48 E-value=7.7 Score=30.80 Aligned_cols=60 Identities=18% Similarity=0.132 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 008183 286 TVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLIS 347 (575)
Q Consensus 286 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 347 (575)
+..+-++.+....+.|+.......+.+|.+.+++..|.++|+.++.+.+ +....|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHH
Confidence 4555666666778999999999999999999999999999998876654 44556777764
|
| >2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A | Back alignment and structure |
|---|
Probab=82.46 E-value=20 Score=37.42 Aligned_cols=44 Identities=18% Similarity=0.205 Sum_probs=28.0
Q ss_pred ccHHHHHHHHhHcCCChHHHHHHHccCCC---CChhhHHHHHHHHhcC
Q 008183 33 RSIYNNLITNYSKSNLLSYSLRLFNHIPS---PNIVSWTALISAHSNS 77 (575)
Q Consensus 33 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~ 77 (575)
..+|. +|--+.+||.+++|.++.++... .-...+-..+..|+.+
T Consensus 153 ~p~Wa-~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~~s 199 (661)
T 2qx5_A 153 VPIWA-LIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYASS 199 (661)
T ss_dssp EEHHH-HHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC---
T ss_pred cccHH-HHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHhC
Confidence 34665 66778899999999999987752 1123566677777644
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=81.87 E-value=14 Score=27.58 Aligned_cols=86 Identities=6% Similarity=-0.182 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHH
Q 008183 115 AFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194 (575)
Q Consensus 115 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 194 (575)
.-++|..+-+.+...+- ...+--.-+..+...|++++|..+.+...-||...|-+|-.. +.|..+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 46667777777666553 333333333456688999999999998888999999887664 66777777776667755
Q ss_pred CCCCcCHHHHH
Q 008183 195 SDVGSTMYCVS 205 (575)
Q Consensus 195 ~g~~p~~~t~~ 205 (575)
.| .|....|.
T Consensus 98 sg-~p~~q~Fa 107 (116)
T 2p58_C 98 SQ-DPRIQTFV 107 (116)
T ss_dssp CC-CHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 54 44444443
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=81.36 E-value=13 Score=27.67 Aligned_cols=86 Identities=7% Similarity=-0.138 Sum_probs=58.2
Q ss_pred hHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHH
Q 008183 115 AFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194 (575)
Q Consensus 115 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 194 (575)
.-++|..+-+.+...+- ...+--.-+..+...|++++|..+.+...-||...|-+|-.. +.|..+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 45667777776666553 333333333456688999999999988888999999877654 77887877777777766
Q ss_pred CCCCcCHHHHH
Q 008183 195 SDVGSTMYCVS 205 (575)
Q Consensus 195 ~g~~p~~~t~~ 205 (575)
.| .|....|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 54 44444443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.23 E-value=5.7 Score=42.23 Aligned_cols=51 Identities=10% Similarity=-0.015 Sum_probs=29.2
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCC
Q 008183 368 EPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVG 419 (575)
Q Consensus 368 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 419 (575)
+.+..-|..|.....+.+++++|.+.|+..+... .++.++.-|+..|.+.+
T Consensus 610 kks~lEWEiLGlla~RL~h~~EA~~a~~~~l~~R-Fs~ka~~kLLeiY~~~~ 660 (754)
T 4gns_B 610 KHSGLEWELLGLIMLRTWHWEDAVACLRTSIVAR-FDPVSCQQLLKIYLQPP 660 (754)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-CCHHHHHHHHHHHHSCC
T ss_pred ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHhcC
Confidence 3445556666666666666666666666665432 34455566666665544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 575 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 0.001 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.3 bits (90), Expect = 0.001
Identities = 42/183 (22%), Positives = 67/183 (36%), Gaps = 9/183 (4%)
Query: 242 LIDGYGKAGIVSDARRVFDEN--LSVLNSIAWNAMMAGYAQQGDQSTVLELF-HLLEMRG 298
L + +A I A + LS +++ + Y +QG ++ + +E++
Sbjct: 209 LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP 268
Query: 299 FAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDA 358
PD Y LA AL G E+E + L + G +E+A
Sbjct: 269 HFPDAYCNLAN--ALKEKGSVAEAEDCYNTALRLCPTHA--DSLNNLANIKREQGNIEEA 324
Query: 359 ERIA-MAMPFEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLS 416
R+ A+ P+ AA L S GK A K I I+P AY + N L
Sbjct: 325 VRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK 384
Query: 417 GVG 419
+
Sbjct: 385 EMQ 387
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 575 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.86 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.83 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.52 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.48 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.08 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.01 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.99 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.98 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.9 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.87 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.85 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.8 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.78 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.7 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.39 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.37 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.34 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.33 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.28 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.25 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.22 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.22 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.18 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.16 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.09 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.07 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.02 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.97 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.9 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.87 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.79 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.79 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.74 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.72 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.71 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.68 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.66 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.65 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.63 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.63 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.62 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.46 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.28 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.23 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.04 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.01 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.99 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.97 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 96.79 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.78 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.76 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.54 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.46 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.01 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.95 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 95.47 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.25 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 92.58 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 86.54 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 86.16 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 85.4 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 84.74 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 82.53 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=2e-18 Score=170.52 Aligned_cols=371 Identities=14% Similarity=0.032 Sum_probs=291.3
Q ss_pred HHHHhHcCCChHHHHHHHccCC--CC-ChhhHHHHHHHHhcCch---HHHHHHHHhhCCCCCcCCChhhHHHHHHHHhhc
Q 008183 39 LITNYSKSNLLSYSLRLFNHIP--SP-NIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASL 112 (575)
Q Consensus 39 li~~~~~~g~~~~A~~~f~~m~--~~-~~~~~~~li~~~~~~g~---a~~~~~~m~~~~~~~~~p~~~t~~~ll~~~~~~ 112 (575)
+-..+.+.|++++|.+.|+++. .| +...|..+...|.+.|+ |+..|++..+.. +-+..++..+...+...
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----p~~~~a~~~l~~~~~~~ 80 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN----PLLAEAYSNLGNVYKER 80 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHhhhh
Confidence 3455677899999999998874 33 56778888888888888 999999988742 23456788888888888
Q ss_pred hhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhc---CCCCcchHHHHHHHHHhCCCchHHHHHH
Q 008183 113 SHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEI---RERDVVCYGAMIVGFAQNSRLVDSLSVF 189 (575)
Q Consensus 113 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m---~~~~~~~~~~li~~~~~~g~~~~A~~~~ 189 (575)
| +++.|...+....+.... +..........+...+....+....... .......+..........+....+...+
T Consensus 81 g-~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (388)
T d1w3ba_ 81 G-QLQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp T-CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred c-cccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHH
Confidence 8 999999999998887643 3344444444444445555544444332 2345556666777777888888888888
Q ss_pred HHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCC
Q 008183 190 ADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLN 267 (575)
Q Consensus 190 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~ 267 (575)
....... +-+...+..+...+...++.+.|...+...++.. +.+...+..+...|...|++++|.+.|+.... +.+
T Consensus 159 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 236 (388)
T d1w3ba_ 159 LKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH 236 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTC
T ss_pred HHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhH
Confidence 8876642 2345677777888889999999999999988864 45677888999999999999999999987433 556
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 008183 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLIS 347 (575)
Q Consensus 268 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 347 (575)
...|..+...+.+.|++++|+..|++..+.. +-+..++..+...+...|+.++|.+.++..... .+.+...+..+..
T Consensus 237 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~ 313 (388)
T d1w3ba_ 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLAN 313 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc--CCccchhhhHHHH
Confidence 6778888999999999999999999988753 235678888899999999999999999877443 2345778888999
Q ss_pred HHhccCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCC
Q 008183 348 AMGRAGRLEDAERIAMAM-PFEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGR 420 (575)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 420 (575)
.+.+.|++++|.+.|++. .+.|+ ..+|..+...+...|++++|...++++++++|.++.+|..|+.+|.+.|+
T Consensus 314 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 314 IKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 999999999999999886 56675 78899999999999999999999999999999999999999999988875
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=2.5e-17 Score=162.43 Aligned_cols=342 Identities=13% Similarity=0.064 Sum_probs=260.8
Q ss_pred HHHHHHHHhhCCCCCcCC-ChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHH
Q 008183 80 SLNIFLSMLRHPTLSFLP-NQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVF 158 (575)
Q Consensus 80 a~~~~~~m~~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f 158 (575)
|++.|+++.+. .| +...+..+...+...| +++.|...+..+++.. +.+..++..+...|.+.|++++|...+
T Consensus 18 A~~~~~~~l~~-----~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~A~~~~ 90 (388)
T d1w3ba_ 18 AERHCMQLWRQ-----EPDNTGVLLLLSSIHFQCR-RLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHY 90 (388)
T ss_dssp HHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcccccccccc
Confidence 77777777663 33 3455666666666777 7777777777777765 345566777777777777777777777
Q ss_pred HhcCC---CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCc
Q 008183 159 DEIRE---RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRN 235 (575)
Q Consensus 159 ~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 235 (575)
....+ .+...+..........+....+........... ..+..............+....+...+....... +.+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 168 (388)
T d1w3ba_ 91 RHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNF 168 (388)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTC
T ss_pred ccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHhhccC-cch
Confidence 76543 233334444444455555555555555544432 2233333444455556667777777777776653 556
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008183 236 VIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313 (575)
Q Consensus 236 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 313 (575)
...+..+...+...|++++|...++..+. +.+..+|..+...+...|++++|+..|++....+. .+...+..+...+
T Consensus 169 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~ 247 (388)
T d1w3ba_ 169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVHGNLACVY 247 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred hHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhh-hHHHHHHHHHHHH
Confidence 77888899999999999999999987544 55677899999999999999999999999988643 4677788888999
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCChHHH
Q 008183 314 CNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM-P-FEPDAAVWRALLSFSAIHGKADMA 390 (575)
Q Consensus 314 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~g~~~~a 390 (575)
.+.|++++|...|++... +.|+ ..++..+...|...|++++|.+.++.. . ...+...+..+...+...|++++|
T Consensus 248 ~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 324 (388)
T d1w3ba_ 248 YEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEA 324 (388)
T ss_dssp HHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred HHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHH
Confidence 999999999999998743 3565 678899999999999999999999877 2 244688899999999999999999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 391 SKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 391 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
...++++++..|.++.++..+..+|.+.|++++|...+++..+.
T Consensus 325 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 368 (388)
T d1w3ba_ 325 VRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999988754
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=5.4e-13 Score=127.96 Aligned_cols=240 Identities=13% Similarity=-0.001 Sum_probs=165.6
Q ss_pred HHHHHHHhCCCchHHHHHHHHhHHCCCCc-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcc
Q 008183 171 AMIVGFAQNSRLVDSLSVFADMRSSDVGS-TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKA 249 (575)
Q Consensus 171 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 249 (575)
.....+.+.|++++|+..|++..+. .| +..+|..+..++...|+++.|...+...++.. +-+...+..+...|...
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 100 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNE 100 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccc
Confidence 3455677888888888888888764 34 35567777777777777777777777777654 34566666777777777
Q ss_pred CCHHHHHHHHhhhCC-CCChh-hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008183 250 GIVSDARRVFDENLS-VLNSI-AWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIE 327 (575)
Q Consensus 250 g~~~~A~~~~~~~~~-~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 327 (575)
|++++|.+.++.++. .|+.. .+....... ...+.......+..+...+...++...+.
T Consensus 101 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (323)
T d1fcha_ 101 SLQRQACEILRDWLRYTPAYAHLVTPAEEGA--------------------GGAGLGPSKRILGSLLSDSLFLEVKELFL 160 (323)
T ss_dssp TCHHHHHHHHHHHHHTSTTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhhHHHhccchHHHHHhhhhhh--------------------hhcccccchhhHHHHHHhhHHHHHHHHHH
Confidence 777777777766332 11111 000000000 00000111112222334456677777777
Q ss_pred HHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCc
Q 008183 328 RMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDD 405 (575)
Q Consensus 328 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 405 (575)
+......-.++..++..+...+...|++++|...|++. ...| +..+|..+...+...|++++|.+.++++++.+|.++
T Consensus 161 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 240 (323)
T d1fcha_ 161 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYI 240 (323)
T ss_dssp HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccH
Confidence 66443333345677888888999999999999999886 3455 488899999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHHhh
Q 008183 406 SAYVIVANVLSGVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 406 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 433 (575)
.++..++.+|.+.|++++|...|++..+
T Consensus 241 ~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 241 RSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999998765
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=6.6e-12 Score=120.15 Aligned_cols=263 Identities=10% Similarity=-0.055 Sum_probs=189.5
Q ss_pred HHHHHHhCCChHHHHHHHHhcCC--C-CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccH
Q 008183 141 LVHFYSRFRSPDNAKKVFDEIRE--R-DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAM 217 (575)
Q Consensus 141 li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 217 (575)
....|.+.|++++|...|+.+.+ | +..+|..+...|...|++++|+..|.+..+.. +-+...+..+...+...|++
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~ 103 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQ 103 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccccc
Confidence 45567899999999999999754 3 56789999999999999999999999988743 22466788888999999999
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 008183 218 EQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR 297 (575)
Q Consensus 218 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 297 (575)
++|.+.+..+.... |+........... ....+.......+..+...+...+|.+.|.+..+.
T Consensus 104 ~~A~~~~~~~~~~~--~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~ 165 (323)
T d1fcha_ 104 RQACEILRDWLRYT--PAYAHLVTPAEEG----------------AGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL 165 (323)
T ss_dssp HHHHHHHHHHHHTS--TTTGGGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhHHHhc--cchHHHHHhhhhh----------------hhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99999999988753 3221110000000 00001111111222344556677888888877664
Q ss_pred C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHH
Q 008183 298 G-FAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAV 373 (575)
Q Consensus 298 g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~ 373 (575)
. -.++...+..+...+...|++++|...++..... .|+ ...|..+...|.+.|++++|.+.|++. .+.| +..+
T Consensus 166 ~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 242 (323)
T d1fcha_ 166 DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRS 242 (323)
T ss_dssp STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hhcccccccchhhHHHHHHHHHHhhhhccccccccc---ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHH
Confidence 3 2346677888888889999999999999987433 454 778888999999999999999999886 4456 4888
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchh-----------HHHHHHHHHhCCCchHHH
Q 008183 374 WRALLSFSAIHGKADMASKMGKRLIDINPYDDSA-----------YVIVANVLSGVGRWDEVA 425 (575)
Q Consensus 374 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----------~~~l~~~~~~~g~~~~a~ 425 (575)
|..+..+|...|++++|...+++++++.|.+... |..+..++...|+.+.+.
T Consensus 243 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~ 305 (323)
T d1fcha_ 243 RYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 305 (323)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999999999999987765443 344555666666665543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.08 E-value=2.5e-08 Score=95.44 Aligned_cols=260 Identities=7% Similarity=-0.102 Sum_probs=163.1
Q ss_pred HHHHhCCCchHHHHHHHHhHHCCCCcC----HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC--CC---chhHHHHHHH
Q 008183 174 VGFAQNSRLVDSLSVFADMRSSDVGST----MYCVSGALRAAAELAAMEQCRVIHGHAVVSGL--DR---NVIVGTGLID 244 (575)
Q Consensus 174 ~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~---~~~~~~~li~ 244 (575)
..+...|++++|++++++..+.....+ ...+..+..++...|++++|...+....+... .. ....+..+..
T Consensus 20 ~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 99 (366)
T d1hz4a_ 20 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 99 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 334556666666666666554321111 12344445555666666666666665544210 11 1234455566
Q ss_pred HHHccCCHHHHHHHHhhhCC------CCC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHcC----CCCCHHHHHHHH
Q 008183 245 GYGKAGIVSDARRVFDENLS------VLN----SIAWNAMMAGYAQQGDQSTVLELFHLLEMRG----FAPDEYSFLAVL 310 (575)
Q Consensus 245 ~~~~~g~~~~A~~~~~~~~~------~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~~~t~~~ll 310 (575)
.|...|++..|...+...+. .+. ...+..+...+...|+++.+...+....... ......++....
T Consensus 100 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (366)
T d1hz4a_ 100 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 179 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 67777777777777665322 111 1234456667778888888888887776542 222345555666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhcCCCCC-----hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-----CHHHHHHHHH
Q 008183 311 TALCNAGLAGESEKWIERMKVRYKLEPG-----LEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-----DAAVWRALLS 379 (575)
Q Consensus 311 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-----~~~~~~~ll~ 379 (575)
..+...+....+...+........-..+ ...+..+...+...|++++|...+++. ...| ....+..+..
T Consensus 180 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~ 259 (366)
T d1hz4a_ 180 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 259 (366)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 6677788888888777655332221111 234556667788889999999988876 2111 2556677888
Q ss_pred HHHHcCChHHHHHHHHHHHhc------CCCCchhHHHHHHHHHhCCCchHHHHHHHHHhh
Q 008183 380 FSAIHGKADMASKMGKRLIDI------NPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 380 ~~~~~g~~~~a~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 433 (575)
++...|++++|...+++++.. .|....++..+..+|...|++++|.+.+++..+
T Consensus 260 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 260 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 899999999999999888742 244455788899999999999999999887643
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.01 E-value=5.9e-08 Score=91.36 Aligned_cols=188 Identities=11% Similarity=0.091 Sum_probs=139.5
Q ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCC-hhhHHHHHHHHHHcCChHHHHHHH
Q 008183 215 AAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLN-SIAWNAMMAGYAQQGDQSTVLELF 291 (575)
Q Consensus 215 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~l~ 291 (575)
+..+++..+++..++...+.+...+...+..+.+.|+++.|..+|+.++. +.+ ...|...+....+.|+.++|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34577888888888765556677788888888899999999999988655 223 346888888888899999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC----C
Q 008183 292 HLLEMRGFAPDEYSFLAVLT-ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM----P 366 (575)
Q Consensus 292 ~~m~~~g~~p~~~t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~ 366 (575)
++..+.+.... ..|..... -+...|+.+.|..+|+.+.... +.+...|...++.+.+.|++++|..+|++. +
T Consensus 158 ~~al~~~~~~~-~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~--p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 158 KKAREDARTRH-HVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHTSTTCCT-HHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHHhCCCcH-HHHHHHHHHHHHhccCHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 98887654332 33333222 2344688899999998885542 334678888888888999999999888875 3
Q ss_pred CCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCc
Q 008183 367 FEPD--AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDD 405 (575)
Q Consensus 367 ~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 405 (575)
..|+ ...|...+.--..+|+.+.+..+.+++.+.-|...
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence 3442 56788888888888999999888888888776543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.99 E-value=6.6e-08 Score=92.34 Aligned_cols=284 Identities=11% Similarity=0.045 Sum_probs=167.1
Q ss_pred HHHHhCCChHHHHHHHHhcCC--CC------cchHHHHHHHHHhCCCchHHHHHHHHhHHC----CCCcC-HHHHHHHHH
Q 008183 143 HFYSRFRSPDNAKKVFDEIRE--RD------VVCYGAMIVGFAQNSRLVDSLSVFADMRSS----DVGST-MYCVSGALR 209 (575)
Q Consensus 143 ~~~~~~g~~~~A~~~f~~m~~--~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~ 209 (575)
..+...|++++|..+|++..+ |+ ...++.+...|...|++++|+..|++.... +..+. ..++..+..
T Consensus 20 ~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 99 (366)
T d1hz4a_ 20 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 99 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 344556666666666655322 21 124555556666666666666666665431 11111 123444455
Q ss_pred HHHhcccHHHHHHHHHHHHHh----CCCCc---hhHHHHHHHHHHccCCHHHHHHHHhhhCC-------CCChhhHHHHH
Q 008183 210 AAAELAAMEQCRVIHGHAVVS----GLDRN---VIVGTGLIDGYGKAGIVSDARRVFDENLS-------VLNSIAWNAMM 275 (575)
Q Consensus 210 ~~~~~~~~~~a~~~~~~~~~~----g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~li 275 (575)
.+...+++..+...+...... +.... ...+..+...|...|+++.+...+..... .....++..+.
T Consensus 100 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (366)
T d1hz4a_ 100 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 179 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 556667777766666655431 11111 23455566777788888888877765332 11223455556
Q ss_pred HHHHHcCChHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC--ChhHHHHHHH
Q 008183 276 AGYAQQGDQSTVLELFHLLEMR----GFAPD--EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEP--GLEHYTCLIS 347 (575)
Q Consensus 276 ~~~~~~g~~~~A~~l~~~m~~~----g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~ 347 (575)
..+...++..++...+.+.... +..+. ...+..+...+...|+.+.|...+........-.+ ....+..+..
T Consensus 180 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~ 259 (366)
T d1hz4a_ 180 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 259 (366)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 6677788888888877765432 11111 23345555667778899999988876522111111 1344566778
Q ss_pred HHhccCChHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---------chhHHH
Q 008183 348 AMGRAGRLEDAERIAMAM-------PFEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDINPYD---------DSAYVI 410 (575)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---------~~~~~~ 410 (575)
.+...|++++|...+++. +..|+ ..++..+...+...|++++|.+.+++.+++.+.. ......
T Consensus 260 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~ 339 (366)
T d1hz4a_ 260 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQ 339 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHH
Confidence 888899999998888765 33443 5677888888999999999999999888754221 112333
Q ss_pred HHHHHHhCCCchHHHH
Q 008183 411 VANVLSGVGRWDEVAE 426 (575)
Q Consensus 411 l~~~~~~~g~~~~a~~ 426 (575)
++..+...++.+++.+
T Consensus 340 ~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 340 QLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHTTCSCHHHH
T ss_pred HHHHHHhcCCChHHHH
Confidence 4455556666666544
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.98 E-value=7.9e-09 Score=94.67 Aligned_cols=222 Identities=12% Similarity=-0.069 Sum_probs=142.4
Q ss_pred chHHHHHHHHhHHCCC-Cc--CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHH
Q 008183 182 LVDSLSVFADMRSSDV-GS--TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRV 258 (575)
Q Consensus 182 ~~~A~~~~~~m~~~g~-~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 258 (575)
.+.++.-+++...... .+ ...++..+..++.+.|++++|...|...++.. +.+..+++.+..+|.+.|++++|.+.
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 4455555666654322 11 12355566677788888888888888888764 55678888899999999999999999
Q ss_pred HhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC
Q 008183 259 FDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLE 336 (575)
Q Consensus 259 ~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 336 (575)
|++++. +.+..+|..+...|...|++++|++.|+...+... .+......+..++.+.+..+....+.... .. ..
T Consensus 94 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~ 169 (259)
T d1xnfa_ 94 FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP-NDPFRSLWLYLAEQKLDEKQAKEVLKQHF-EK--SD 169 (259)
T ss_dssp HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCHHHHHHHHHHHH-HH--SC
T ss_pred hhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHh-hc--cc
Confidence 988554 44567888888899999999999999998877632 24444444444445555555555554444 22 22
Q ss_pred CChhHHHHHHHHHhccCC----hHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHH
Q 008183 337 PGLEHYTCLISAMGRAGR----LEDAERIAMAM-PFEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYV 409 (575)
Q Consensus 337 p~~~~~~~li~~~~~~g~----~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 409 (575)
++...++. +..+..... .+.+...+... ...|+ ..+|..|...+...|++++|...++++++.+|.+...|.
T Consensus 170 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 247 (259)
T d1xnfa_ 170 KEQWGWNI-VEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR 247 (259)
T ss_dssp CCSTHHHH-HHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred hhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 33323322 223222222 22222211111 12232 456777888999999999999999999999998765443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.90 E-value=1.2e-07 Score=89.05 Aligned_cols=182 Identities=9% Similarity=-0.003 Sum_probs=144.5
Q ss_pred CCHHHHHHHHhhhCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008183 250 GIVSDARRVFDENLS---VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326 (575)
Q Consensus 250 g~~~~A~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 326 (575)
+..++|.++|++++. +.+...|...+..+...|+.++|..+|+++...........|...+..+.+.|+.+.|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 446788889987654 44667788889999999999999999999987644444567888999999999999999999
Q ss_pred HHHHHhcCCCC-ChhHHHHHHHH-HhccCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 008183 327 ERMKVRYKLEP-GLEHYTCLISA-MGRAGRLEDAERIAMAM-PFE-PDAAVWRALLSFSAIHGKADMASKMGKRLIDINP 402 (575)
Q Consensus 327 ~~m~~~~~~~p-~~~~~~~li~~-~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 402 (575)
..+... .| +...|...... +...|+.+.|..+|+.+ ... .+...|...+..+...|+.+.|..+|+++++..|
T Consensus 158 ~~al~~---~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 158 KKARED---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHTS---TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHHh---CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 988432 34 34445444443 34568999999999988 223 3588999999999999999999999999998776
Q ss_pred CCc----hhHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 403 YDD----SAYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 403 ~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
.++ ..|...+..-...|+.+.+.++.+++.+.
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 543 36888888888999999999999988653
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.87 E-value=1.2e-07 Score=89.34 Aligned_cols=199 Identities=10% Similarity=0.052 Sum_probs=104.7
Q ss_pred hcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccC-CHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHH
Q 008183 213 ELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG-IVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLE 289 (575)
Q Consensus 213 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~ 289 (575)
+.+..++|.++++.+++.. |-+...|+....++...| ++++|.+.++.++. +.+..+|+.+...+.+.|++++|++
T Consensus 55 ~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~ 133 (315)
T d2h6fa1 55 RDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELE 133 (315)
T ss_dssp HTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHH
T ss_pred hCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHH
Confidence 3344444444444444432 333444455555555444 35555555554332 3445556655555666666666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCC------hHHHHHHH
Q 008183 290 LFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGR------LEDAERIA 362 (575)
Q Consensus 290 l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~------~~~A~~~~ 362 (575)
.|+++.+... -+...|..+...+.+.|++++|.+.++.... +.|+ ...|+.+...+.+.+. +++|.+.+
T Consensus 134 ~~~kal~~dp-~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~---~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~ 209 (315)
T d2h6fa1 134 FIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYT 209 (315)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHH
T ss_pred HHhhhhhhhh-cchHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HCCccHHHHHHHHHHHHHccccchhhhhHHhHHHH
Confidence 6666655422 2455555566666666666666666665532 2332 4445544444444333 45666665
Q ss_pred HhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCc--hhHHHHHHHHHh
Q 008183 363 MAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDD--SAYVIVANVLSG 417 (575)
Q Consensus 363 ~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~--~~~~~l~~~~~~ 417 (575)
.+. .+.| +...|..+...+.. ...+++.+.++...++.|... ..+..++..|..
T Consensus 210 ~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 210 LEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED 267 (315)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence 554 3345 46667666555443 345777777777777776543 344455555543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.85 E-value=3.4e-07 Score=86.18 Aligned_cols=208 Identities=11% Similarity=-0.009 Sum_probs=140.6
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCH-HHHHHHHHHHHhcc-cHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 008183 168 CYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTM-YCVSGALRAAAELA-AMEQCRVIHGHAVVSGLDRNVIVGTGLIDG 245 (575)
Q Consensus 168 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 245 (575)
.|+.+-..+.+.+.+++|+++++++.+. .|+. ..|.....++...+ ++++|...++.+++.. +-+..+|+.+...
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence 4566666677778888888888888773 4544 35566666666655 4788888888887764 5567788888888
Q ss_pred HHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-----
Q 008183 246 YGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL----- 318 (575)
Q Consensus 246 ~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~----- 318 (575)
+.+.|++++|.+.|+.++. +.+...|+.+...+.+.|++++|++.|+++.+.... +...|+.+...+.+.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~~ 200 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRA 200 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchhh
Confidence 8888888888888887554 567788888888888888888888888888876432 55566665555554443
Q ss_pred -HHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC----CCCCCHHHHHHHHHHHHH
Q 008183 319 -AGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM----PFEPDAAVWRALLSFSAI 383 (575)
Q Consensus 319 -~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~~ 383 (575)
+++|...+..... +.|+ ...|+.+...+...| .+++.+.++.. +...+...+..++..|..
T Consensus 201 ~~~~ai~~~~~al~---~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 201 VLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED 267 (315)
T ss_dssp HHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHH---hCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence 5677777776643 3454 666666665555443 45555555444 323345566666665543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.80 E-value=3.7e-08 Score=90.06 Aligned_cols=214 Identities=13% Similarity=0.034 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHHHhCCCC---chhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHH
Q 008183 217 MEQCRVIHGHAVVSGLDR---NVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELF 291 (575)
Q Consensus 217 ~~~a~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~ 291 (575)
.+.+..-+.+++...... ...++..+..+|.+.|++++|.+.|++++. +.+..+|+.+..+|.+.|++++|++.|
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 94 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAF 94 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhh
Confidence 334444455554432111 235677788999999999999999998665 667889999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC
Q 008183 292 HLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM-PFEP 369 (575)
Q Consensus 292 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 369 (575)
++..+.... +..++..+..++...|++++|...++..... .|+ ......+...+.+.+..+.+..+.... ...+
T Consensus 95 ~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (259)
T d1xnfa_ 95 DSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK 170 (259)
T ss_dssp HHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC
T ss_pred hHHHHHHhh-hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh---ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccch
Confidence 999986432 4567888889999999999999999988543 454 444334444455555555444443333 1122
Q ss_pred CHHHHHHHHHHHHHc----CChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCC
Q 008183 370 DAAVWRALLSFSAIH----GKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435 (575)
Q Consensus 370 ~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 435 (575)
+...++. +..+... +..+.+...+.......|....+|..+...|...|++++|.+.|++.....
T Consensus 171 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 171 EQWGWNI-VEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp CSTHHHH-HHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 2222221 2222111 112333333333333445556678889999999999999999999887643
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.78 E-value=1.6e-08 Score=96.55 Aligned_cols=267 Identities=8% Similarity=-0.069 Sum_probs=181.6
Q ss_pred HHHHHHhCCChHHHHHHHHhcCC--CCc-chHHHHHHH----------HHhCCCchHHHHHHHHhHHCCCCcCHHHHHHH
Q 008183 141 LVHFYSRFRSPDNAKKVFDEIRE--RDV-VCYGAMIVG----------FAQNSRLVDSLSVFADMRSSDVGSTMYCVSGA 207 (575)
Q Consensus 141 li~~~~~~g~~~~A~~~f~~m~~--~~~-~~~~~li~~----------~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 207 (575)
++....+.+..++|..+++...+ |+. ..|+..-.. +...|++++|+..++...+.. +-+...+...
T Consensus 35 ~~~~~~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~ 113 (334)
T d1dcea1 35 VFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHR 113 (334)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHhcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHh
Confidence 33333344445677777776653 432 334432222 223345778888888887642 2244556666
Q ss_pred HHHHHhcc--cHHHHHHHHHHHHHhCCCCchhHHH-HHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcC
Q 008183 208 LRAAAELA--AMEQCRVIHGHAVVSGLDRNVIVGT-GLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQG 282 (575)
Q Consensus 208 l~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g 282 (575)
..++...+ +.+++...+..+++.. +++...+. .....+...|..++|.+.++.++. +.+..+|+.+...+.+.|
T Consensus 114 ~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~ 192 (334)
T d1dcea1 114 CWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH 192 (334)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHS
T ss_pred hHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 66666654 4788888888888874 44455544 445777888999999999998555 567788999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHH
Q 008183 283 DQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIA 362 (575)
Q Consensus 283 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 362 (575)
++++|...++..... .|+.. .+...+...+..+++...+...... -.++...+..+...+...|+.++|...+
T Consensus 193 ~~~~A~~~~~~~~~~--~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 265 (334)
T d1dcea1 193 PQPDSGPQGRLPENV--LLKEL---ELVQNAFFTDPNDQSAWFYHRWLLG--RAEPLFRCELSVEKSTVLQSELESCKEL 265 (334)
T ss_dssp CCCCSSSCCSSCHHH--HHHHH---HHHHHHHHHCSSCSHHHHHHHHHHS--CCCCSSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhHHh--HHHHH---HHHHHHHHhcchhHHHHHHHHHHHh--CcchhhHHHHHHHHHHHHhhHHHHHHHH
Confidence 998887666544432 12221 2223344456666677666655322 2334556667777888889999999988
Q ss_pred HhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 008183 363 MAM-PFEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLS 416 (575)
Q Consensus 363 ~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 416 (575)
.+. ...|+ ..+|..+...+...|+.++|.+.++++++++|.+...|..|...+.
T Consensus 266 ~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 266 QELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL 321 (334)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHh
Confidence 876 45563 6788889999999999999999999999999988888887766665
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.70 E-value=8.6e-09 Score=98.55 Aligned_cols=256 Identities=9% Similarity=-0.099 Sum_probs=182.0
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHH-HHH---HHHH-------HHhcccHHHHHHHHHHHHHhCCCCchh
Q 008183 169 YGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYC-VSG---ALRA-------AAELAAMEQCRVIHGHAVVSGLDRNVI 237 (575)
Q Consensus 169 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~---ll~~-------~~~~~~~~~a~~~~~~~~~~g~~~~~~ 237 (575)
++.++......+..++|++++++..+. .|+..+ |+. ++.. ....+.++++..+++.+++.. +.+..
T Consensus 32 ~~~~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~ 108 (334)
T d1dcea1 32 TQAVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYG 108 (334)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHH
Confidence 344444444444568999999999873 576543 322 2222 233456788999999988874 55677
Q ss_pred HHHHHHHHHHccC--CHHHHHHHHhhhCC--CCChhhHHHH-HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008183 238 VGTGLIDGYGKAG--IVSDARRVFDENLS--VLNSIAWNAM-MAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312 (575)
Q Consensus 238 ~~~~li~~~~~~g--~~~~A~~~~~~~~~--~~~~~~~~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 312 (575)
.+..+..++...+ ++++|...+..++. +++...|... ...+...+.+++|+..++...+.... +...|..+...
T Consensus 109 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~ 187 (334)
T d1dcea1 109 TWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCL 187 (334)
T ss_dssp HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHH
T ss_pred HHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHHH
Confidence 7777777777766 48899999988544 5566666544 46677789999999999988876443 67788888888
Q ss_pred HHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHH
Q 008183 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM--PFEPDAAVWRALLSFSAIHGKADMA 390 (575)
Q Consensus 313 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a 390 (575)
+...|++++|...+...... .|+ ...+...+...+..+++...+... ...++...+..+...+...++.++|
T Consensus 188 ~~~~~~~~~A~~~~~~~~~~---~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a 261 (334)
T d1dcea1 188 LPQLHPQPDSGPQGRLPENV---LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELES 261 (334)
T ss_dssp HHHHSCCCCSSSCCSSCHHH---HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHhHHh---HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHH
Confidence 88888887776554433211 121 112333445566667777666654 2123455566677778888999999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 391 SKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 391 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
...+.+..+.+|.+..++..++.+|...|++++|.+.+++..+.
T Consensus 262 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 262 CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999899999999999999999999999998764
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.39 E-value=3e-06 Score=78.52 Aligned_cols=190 Identities=8% Similarity=-0.067 Sum_probs=124.4
Q ss_pred HHHHHHccCCHHHHHHHHhhhCC----CCC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHc----CC-CCCHHHHHH
Q 008183 242 LIDGYGKAGIVSDARRVFDENLS----VLN----SIAWNAMMAGYAQQGDQSTVLELFHLLEMR----GF-APDEYSFLA 308 (575)
Q Consensus 242 li~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~-~p~~~t~~~ 308 (575)
..+.|...|++++|.+.|.+++. ..+ ..+|+.+...|.+.|++++|++.+++..+. |. .....++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 45667888888888888876433 112 346788888888899999988888876442 11 112345666
Q ss_pred HHHHHH-hcCCHHHHHHHHHHHHHhc---CCCCC-hhHHHHHHHHHhccCChHHHHHHHHhCC-CC-------CC-HHHH
Q 008183 309 VLTALC-NAGLAGESEKWIERMKVRY---KLEPG-LEHYTCLISAMGRAGRLEDAERIAMAMP-FE-------PD-AAVW 374 (575)
Q Consensus 309 ll~a~~-~~g~~~~a~~~~~~m~~~~---~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~-------p~-~~~~ 374 (575)
+...|. ..|++++|.+.+.+...-. +-.+. ..++..+...|...|++++|.+.|++.. .. .. ...+
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 666664 4699999999998764321 11121 4567888899999999999999998861 11 11 1234
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCch-----hHHHHHHHHHh--CCCchHHHHHHHHH
Q 008183 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDS-----AYVIVANVLSG--VGRWDEVAEVRKVM 431 (575)
Q Consensus 375 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~--~g~~~~a~~~~~~m 431 (575)
..++..+...|+++.|...+++..+.+|..+. ....|+.+|.. .+.+++|...|+.+
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 45555667889999999999999998875332 34456666655 34577777777543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.37 E-value=4.6e-06 Score=77.16 Aligned_cols=201 Identities=8% Similarity=-0.056 Sum_probs=140.2
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHc--
Q 008183 220 CRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR-- 297 (575)
Q Consensus 220 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-- 297 (575)
+.+++....+.+ .+....+..+.. ...+++++|.++|.+ ....|...|++++|.+.|.+..+.
T Consensus 4 ~~~~l~~aek~~-~~~~~~~~~~~~--~~~~~~~~Aa~~y~~------------aa~~y~~~~~~~~A~~~y~kA~~~~~ 68 (290)
T d1qqea_ 4 PVELLKRAEKKG-VPSSGFMKLFSG--SDSYKFEEAADLCVQ------------AATIYRLRKELNLAGDSFLKAADYQK 68 (290)
T ss_dssp HHHHHHHHHHHS-SCCCTHHHHHSC--CSHHHHHHHHHHHHH------------HHHHHHHTTCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-CcchhHHHHhcC--CccccHHHHHHHHHH------------HHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 445555555554 333322221110 122357888888877 567899999999999999988653
Q ss_pred --CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHh-ccCChHHHHHHHHhC----
Q 008183 298 --GFAPD-EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG----LEHYTCLISAMG-RAGRLEDAERIAMAM---- 365 (575)
Q Consensus 298 --g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~-~~g~~~~A~~~~~~m---- 365 (575)
+-.|+ ..+|..+..+|.+.|++++|...++....-..-..+ ..++..+...|- ..|++++|.+.+++.
T Consensus 69 ~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~ 148 (290)
T d1qqea_ 69 KAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWY 148 (290)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHH
Confidence 22222 367888999999999999999999876432211112 455666676774 469999999998776
Q ss_pred ---CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCch-------hHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 366 ---PFEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDS-------AYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 366 ---~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
+..+. ..++..+...+...|++++|...++++....|.+.. .+...+..+...|+++.|...+++..+.
T Consensus 149 ~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~ 228 (290)
T d1qqea_ 149 AQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (290)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 11121 456888899999999999999999999987765532 3455667788899999999999988765
Q ss_pred C
Q 008183 435 R 435 (575)
Q Consensus 435 ~ 435 (575)
.
T Consensus 229 ~ 229 (290)
T d1qqea_ 229 D 229 (290)
T ss_dssp -
T ss_pred C
Confidence 3
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.34 E-value=1.2e-05 Score=69.19 Aligned_cols=141 Identities=9% Similarity=-0.100 Sum_probs=97.7
Q ss_pred HHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008183 243 IDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGES 322 (575)
Q Consensus 243 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 322 (575)
...+...|+++.|.+.|.+ +.+++...|..+...|...|++++|++.|++..+... -+...|..+..++.+.|++++|
T Consensus 12 g~~~~~~~d~~~Al~~~~~-i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp-~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSA-VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHT-SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHh-cCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhh-hhhhhHHHHHHHHHhhccHHHH
Confidence 4456778889999998888 7778888888888888889999999998888887643 3567788888888888888888
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 008183 323 EKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDIN 401 (575)
Q Consensus 323 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 401 (575)
...|++..... .++... .|...| +...++ ..++..+..++...|++++|.+.+.++++..
T Consensus 90 ~~~~~kAl~~~--~~n~~~------~~~~~~-----------~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 90 IKDLKEALIQL--RGNQLI------DYKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHHTT--TTCSEE------ECGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhC--ccCchH------HHHHhh-----------hhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 88888763211 111100 000000 001111 2345566677888888888888888888877
Q ss_pred CCC
Q 008183 402 PYD 404 (575)
Q Consensus 402 p~~ 404 (575)
|..
T Consensus 151 ~~~ 153 (192)
T d1hh8a_ 151 SEP 153 (192)
T ss_dssp CSG
T ss_pred CCc
Confidence 754
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.33 E-value=1.3e-06 Score=75.98 Aligned_cols=102 Identities=14% Similarity=-0.037 Sum_probs=57.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HHHHHHH
Q 008183 301 PDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM-PFEPD-AAVWRAL 377 (575)
Q Consensus 301 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l 377 (575)
|+...+......+.+.|++++|...|.+.... .|+ ...|..+..+|.+.|++++|...|++. .+.|+ ..+|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~---~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHH
Confidence 45555555556666666666666666555322 233 455555555566666666666655554 34453 5555556
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCc
Q 008183 378 LSFSAIHGKADMASKMGKRLIDINPYDD 405 (575)
Q Consensus 378 l~~~~~~g~~~~a~~~~~~~~~~~p~~~ 405 (575)
..+|...|++++|...+++++++.|.+.
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~l~p~~~ 106 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYSLAKEQR 106 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcccH
Confidence 6666666666666666666555554433
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=2.1e-06 Score=67.34 Aligned_cols=88 Identities=17% Similarity=0.206 Sum_probs=57.6
Q ss_pred HHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHH
Q 008183 347 SAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEV 424 (575)
Q Consensus 347 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 424 (575)
..+.+.|++++|...|++. ...| +...|..+..++...|++++|+..+.++++++|.++..|..++.+|...|++++|
T Consensus 11 ~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A 90 (117)
T d1elwa_ 11 NKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEA 90 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHHH
Confidence 3455566666666666665 2334 3666666666677777777777777777777776666777777777777777777
Q ss_pred HHHHHHHhhC
Q 008183 425 AEVRKVMKDR 434 (575)
Q Consensus 425 ~~~~~~m~~~ 434 (575)
...+++..+.
T Consensus 91 ~~~~~~a~~~ 100 (117)
T d1elwa_ 91 KRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 7777666543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=7.9e-06 Score=63.86 Aligned_cols=103 Identities=9% Similarity=0.008 Sum_probs=83.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC
Q 008183 310 LTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGK 386 (575)
Q Consensus 310 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~ 386 (575)
...+...|++++|...|.+.... .|+ ...|..+..+|.+.|++++|...+++. .+.| +...|..+..++...|+
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc---CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccC
Confidence 45567788888888888887543 454 677888888888999999999888877 3344 58889999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 008183 387 ADMASKMGKRLIDINPYDDSAYVIVANVL 415 (575)
Q Consensus 387 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 415 (575)
+++|...+++.++.+|.++.++..+.++-
T Consensus 87 ~~~A~~~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 99999999999999999887766665543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.22 E-value=3.2e-06 Score=73.33 Aligned_cols=96 Identities=5% Similarity=-0.130 Sum_probs=58.5
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHH
Q 008183 266 LNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTC 344 (575)
Q Consensus 266 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 344 (575)
|+..........|.+.|++++|+..|++..+.. +-+...|..+..+|.+.|++++|...|.... .+.|+ ..+|..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al---~l~p~~~~a~~~ 77 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRAL---ELDGQSVKAHFF 77 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSCTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHH---HhCCCcHHHHHH
Confidence 344444555566666666666666666666543 2245556666666666666666666666552 34554 556666
Q ss_pred HHHHHhccCChHHHHHHHHhC
Q 008183 345 LISAMGRAGRLEDAERIAMAM 365 (575)
Q Consensus 345 li~~~~~~g~~~~A~~~~~~m 365 (575)
+..+|.+.|++++|...|++.
T Consensus 78 lg~~~~~l~~~~~A~~~~~~a 98 (201)
T d2c2la1 78 LGQCQLEMESYDEAIANLQRA 98 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 666666666666666666554
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.22 E-value=1.5e-06 Score=67.47 Aligned_cols=88 Identities=17% Similarity=0.069 Sum_probs=79.5
Q ss_pred HHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCc
Q 008183 344 CLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRW 421 (575)
Q Consensus 344 ~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 421 (575)
.+...+.+.|++++|...|++. ...| ++.+|..+..++...|++++|+..++++++++|.++.++..|+..|...|++
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCH
Confidence 4556778899999999999887 4456 4899999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHH
Q 008183 422 DEVAEVRKVM 431 (575)
Q Consensus 422 ~~a~~~~~~m 431 (575)
++|.+.+++.
T Consensus 101 ~~A~~~l~~~ 110 (112)
T d1hxia_ 101 NAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999875
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.18 E-value=3.8e-05 Score=65.83 Aligned_cols=84 Identities=6% Similarity=-0.060 Sum_probs=41.1
Q ss_pred HHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHH
Q 008183 144 FYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVI 223 (575)
Q Consensus 144 ~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 223 (575)
.+...|+++.|.+.|+++..++..+|..+...|...|++++|++.|++..+.. +-+...|..+..++.+.|++++|...
T Consensus 14 ~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~~~ 92 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAIKD 92 (192)
T ss_dssp HHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHHHH
Confidence 34455555555555555555555555555555555555555555555554421 11233344444444444444444444
Q ss_pred HHHHH
Q 008183 224 HGHAV 228 (575)
Q Consensus 224 ~~~~~ 228 (575)
|+..+
T Consensus 93 ~~kAl 97 (192)
T d1hh8a_ 93 LKEAL 97 (192)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.16 E-value=1.6e-05 Score=66.03 Aligned_cols=115 Identities=12% Similarity=-0.012 Sum_probs=88.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC
Q 008183 310 LTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGK 386 (575)
Q Consensus 310 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~ 386 (575)
...|.+.|++++|...|.+.... .|+ ...|..+...|...|++++|...|++. .+.| +..+|..+..++...|+
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHhhhcccc---chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC
Confidence 44567888888888888877433 454 778888888888999999999888877 4455 47889999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCchhHHHHHHHH--HhCCCchHHHHH
Q 008183 387 ADMASKMGKRLIDINPYDDSAYVIVANVL--SGVGRWDEVAEV 427 (575)
Q Consensus 387 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~a~~~ 427 (575)
+++|...++++++++|.++..+..+..+. ...+.+++|...
T Consensus 94 ~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 94 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999998888776665443 333445555443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.09 E-value=9.1e-06 Score=67.51 Aligned_cols=91 Identities=12% Similarity=0.041 Sum_probs=82.4
Q ss_pred HHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCch
Q 008183 345 LISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWD 422 (575)
Q Consensus 345 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 422 (575)
....|.+.|++++|...|++. .+.| +...|..+...|...|++++|...++++++++|.+..+|..++.+|...|+++
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHH
Confidence 345678999999999999987 4455 58899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCC
Q 008183 423 EVAEVRKVMKDRR 435 (575)
Q Consensus 423 ~a~~~~~~m~~~~ 435 (575)
+|...+++.....
T Consensus 96 eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 96 AALRDYETVVKVK 108 (159)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcC
Confidence 9999999887643
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.07 E-value=0.00074 Score=60.64 Aligned_cols=114 Identities=8% Similarity=-0.134 Sum_probs=71.0
Q ss_pred CCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhc----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChH
Q 008183 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGR----AGRLEDAERIAMAMPFEPDAAVWRALLSFSAI----HGKAD 388 (575)
Q Consensus 317 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~ 388 (575)
.....+...+... .. ..+...+..|...|.. ..+...+..+++...-..+..+...|...+.. ..+.+
T Consensus 124 ~~~~~a~~~~~~~-~~---~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~ 199 (265)
T d1ouva_ 124 RDFKKAVEYFTKA-CD---LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFK 199 (265)
T ss_dssp CCHHHHHHHHHHH-HH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHH
T ss_pred chhHHHHHHhhhh-hc---ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchh
Confidence 3455555555543 22 2344555555555553 34555666666555223355555556555554 46788
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHh----CCCchHHHHHHHHHhhCCC
Q 008183 389 MASKMGKRLIDINPYDDSAYVIVANVLSG----VGRWDEVAEVRKVMKDRRV 436 (575)
Q Consensus 389 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 436 (575)
.|...+++..+.+ ++.++..|..+|.. ..+.++|.+.|++-.+.|.
T Consensus 200 ~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 200 EALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 8899998888776 45577778888875 4478889999988877764
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=4.6e-05 Score=63.82 Aligned_cols=132 Identities=9% Similarity=0.003 Sum_probs=93.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 008183 270 AWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAM 349 (575)
Q Consensus 270 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 349 (575)
.+......+.+.|++++|+..|++....-.... +..+.-......+ ...+|+.+..+|
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~--------------~~~~~~~~~~~~~--------~~~~~~nla~~y 72 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYES--------------SFSNEEAQKAQAL--------RLASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCC--------------CCCSHHHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcc--------------ccchHHHhhhchh--------HHHHHHHHHHHH
Confidence 344556678888888888888887765311000 0000000111111 123567788889
Q ss_pred hccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchH
Q 008183 350 GRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDE 423 (575)
Q Consensus 350 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 423 (575)
.+.|++++|...+++. .+.| ++.+|..+..++...|++++|...++++++++|.++.+...+..+..+.+...+
T Consensus 73 ~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~ 148 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLA 148 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998877 4566 688999999999999999999999999999999999888888777666555444
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.97 E-value=0.0052 Score=54.75 Aligned_cols=221 Identities=6% Similarity=-0.126 Sum_probs=103.7
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHh----cccHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 008183 169 YGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAE----LAAMEQCRVIHGHAVVSGLDRNVIVGTGLID 244 (575)
Q Consensus 169 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 244 (575)
+..|-..+.+.+++++|++.|++..+.| |...+..+-..+.. ..+...+...+....+.+ +......|..
T Consensus 5 ~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~~ 78 (265)
T d1ouva_ 5 LVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGN 78 (265)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhcccc
Confidence 3333334444445555555555444433 22222223333322 234444555544444443 1222222322
Q ss_pred HHHc----cCCHHHHHHHHhhhCCCCChhhHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-
Q 008183 245 GYGK----AGIVSDARRVFDENLSVLNSIAWNAMMAGYAQ----QGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN- 315 (575)
Q Consensus 245 ~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~- 315 (575)
.+.. ..+.+.|...++.............+...+.. ......+...+...... .+...+..+...+..
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~~~~~~~ 155 (265)
T d1ouva_ 79 LYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILGSLYDAG 155 (265)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHT
T ss_pred ccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhhhhhccC
Confidence 2222 23445555555543333233332223222222 23344445555444432 234444444444443
Q ss_pred ---cCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhc----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHH----c
Q 008183 316 ---AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGR----AGRLEDAERIAMAMPFEPDAAVWRALLSFSAI----H 384 (575)
Q Consensus 316 ---~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~ 384 (575)
..+...+..++... .+. .+......|...|.. ..++++|..+|++....-++..+..|...|.. .
T Consensus 156 ~~~~~~~~~~~~~~~~a-~~~---g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~ 231 (265)
T d1ouva_ 156 RGTPKDLKKALASYDKA-CDL---KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVT 231 (265)
T ss_dssp SSSCCCHHHHHHHHHHH-HHT---TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSS
T ss_pred CCcccccccchhhhhcc-ccc---cccccccchhhhcccCcccccchhhhhhhHhhhhcccCHHHHHHHHHHHHcCCCCc
Confidence 34555666665544 222 234444444444443 45778888888776323355666666666654 3
Q ss_pred CChHHHHHHHHHHHhcCC
Q 008183 385 GKADMASKMGKRLIDINP 402 (575)
Q Consensus 385 g~~~~a~~~~~~~~~~~p 402 (575)
.+.++|.+.+++..+.+.
T Consensus 232 ~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 232 RNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp CCSTTHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHHCcC
Confidence 377888888888877774
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.90 E-value=7.6e-05 Score=58.35 Aligned_cols=102 Identities=15% Similarity=-0.004 Sum_probs=77.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCC---hHHHHHHHHhC-CCCCC---HHHHHHHH
Q 008183 307 LAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGR---LEDAERIAMAM-PFEPD---AAVWRALL 378 (575)
Q Consensus 307 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~---~~~A~~~~~~m-~~~p~---~~~~~~ll 378 (575)
..+++.+...+++++|.+.|+.... +.|+ ..++..+..++.+.++ +++|..+|++. ...|+ ..+|..|.
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~---~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg 79 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKA---AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLA 79 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence 3567777888889999999987743 3454 6777788888876554 45688888886 33443 34778889
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCchhHHHH
Q 008183 379 SFSAIHGKADMASKMGKRLIDINPYDDSAYVIV 411 (575)
Q Consensus 379 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 411 (575)
.+|.+.|++++|.+.++++++++|.+..+...+
T Consensus 80 ~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~ 112 (122)
T d1nzna_ 80 VGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE 112 (122)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 999999999999999999999999887654433
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.87 E-value=0.0099 Score=54.65 Aligned_cols=282 Identities=9% Similarity=-0.011 Sum_probs=158.0
Q ss_pred cCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHH
Q 008183 95 FLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIV 174 (575)
Q Consensus 95 ~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~ 174 (575)
-.||..-...+..-|.+.| .++.|..++..+ .-|..++..|.+.+++..|.+++.... +..+|..+..
T Consensus 10 ~~~n~~d~~~i~~~c~~~~-lye~A~~lY~~~---------~d~~rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~ 77 (336)
T d1b89a_ 10 NGPNNAHIQQVGDRCYDEK-MYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCF 77 (336)
T ss_dssp TCC-----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHH
T ss_pred cCCCcCCHHHHHHHHHHCC-CHHHHHHHHHhC---------CCHHHHHHHHHhhccHHHHHHHHHHcC--CHHHHHHHHH
Confidence 3466666667777888888 888888888754 235677888888999999988887653 5668888888
Q ss_pred HHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHH
Q 008183 175 GFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254 (575)
Q Consensus 175 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 254 (575)
.+.+.....-| .+.......+......++..+-..|..++...++...... -..+..+++-++..|++.+. ++
T Consensus 78 ~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~-~k 150 (336)
T d1b89a_ 78 ACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKP-QK 150 (336)
T ss_dssp HHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCH-HH
T ss_pred HHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhCh-HH
Confidence 88887765443 2223344556666778888999999999888888877543 25677788899999998753 44
Q ss_pred HHHHHhhhCCCCC----------hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008183 255 ARRVFDENLSVLN----------SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEK 324 (575)
Q Consensus 255 A~~~~~~~~~~~~----------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 324 (575)
-.+.+...-..-| ...|.-++-.|.+.|++++|..+. .+. .|+..-....+..+.+..+.+...+
T Consensus 151 l~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~---i~~--~~~~~~~~~f~e~~~k~~N~e~~~~ 225 (336)
T d1b89a_ 151 MREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM---MNH--PTDAWKEGQFKDIITKVANVELYYR 225 (336)
T ss_dssp HHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH---HHS--TTTTCCHHHHHHHHHHCSSTHHHHH
T ss_pred HHHHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHH---HHc--chhhhhHHHHHHHHHccCChHHHHH
Confidence 4444443111111 123445555555566665555442 221 2222222334444556666665555
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 008183 325 WIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYD 404 (575)
Q Consensus 325 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 404 (575)
+....... .| ...+.|+......-+..+..+.+++ .+++......++...+.+ +
T Consensus 226 ~i~~yL~~---~p--~~i~~lL~~v~~~~d~~r~V~~~~k-------------------~~~l~li~p~Le~v~~~n--~ 279 (336)
T d1b89a_ 226 AIQFYLEF---KP--LLLNDLLMVLSPRLDHTRAVNYFSK-------------------VKQLPLVKPYLRSVQNHN--N 279 (336)
T ss_dssp HHHHHHHH---CG--GGHHHHHHHHGGGCCHHHHHHHHHH-------------------TTCTTTTHHHHHHHHTTC--C
T ss_pred HHHHHHHc---CH--HHHHHHHHHhccCCCHHHHHHHHHh-------------------cCCcHHHHHHHHHHHHcC--h
Confidence 55544221 23 2334455555555555555555444 344444445554443322 3
Q ss_pred chhHHHHHHHHHhCCCchHHHH
Q 008183 405 DSAYVIVANVLSGVGRWDEVAE 426 (575)
Q Consensus 405 ~~~~~~l~~~~~~~g~~~~a~~ 426 (575)
..+.+.|...|...++++.-++
T Consensus 280 ~~vn~al~~lyie~~d~~~l~~ 301 (336)
T d1b89a_ 280 KSVNESLNNLFITEEDYQALRT 301 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCcchhHHHHH
Confidence 3567777788888777655333
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.79 E-value=0.00022 Score=55.57 Aligned_cols=98 Identities=8% Similarity=-0.024 Sum_probs=71.5
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCH---HHHHHHHhhhCC-CCC---hhhHHHHHHH
Q 008183 205 SGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV---SDARRVFDENLS-VLN---SIAWNAMMAG 277 (575)
Q Consensus 205 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~-~~~---~~~~~~li~~ 277 (575)
..+++.+...+++++|++.|+..++.+ +.+..++..+..++.+.++. ++|.++|++++. .|+ ..+|..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 456777788888888888888888876 66777888888888775544 458888887554 222 2366777888
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHH
Q 008183 278 YAQQGDQSTVLELFHLLEMRGFAPDEYS 305 (575)
Q Consensus 278 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t 305 (575)
|.+.|++++|++.|++..+. .|+..-
T Consensus 82 y~~~g~~~~A~~~~~~aL~~--~P~~~~ 107 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQT--EPQNNQ 107 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred HHHHhhhHHHHHHHHHHHHh--CcCCHH
Confidence 88888888888888888774 455443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.79 E-value=0.00012 Score=61.08 Aligned_cols=81 Identities=12% Similarity=0.011 Sum_probs=69.0
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 008183 339 LEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLS 416 (575)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 416 (575)
...|..+...|.+.|++++|+..+++. .+.| ++.+|..+..++...|++++|...++++++++|.+..++..+..++.
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~ 156 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ 156 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 556777888899999999999999887 5667 48899999999999999999999999999999999888777766664
Q ss_pred hCC
Q 008183 417 GVG 419 (575)
Q Consensus 417 ~~g 419 (575)
+..
T Consensus 157 ~l~ 159 (169)
T d1ihga1 157 KIK 159 (169)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.74 E-value=0.00023 Score=59.20 Aligned_cols=93 Identities=8% Similarity=0.002 Sum_probs=73.3
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 008183 340 EHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSG 417 (575)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 417 (575)
..|+.+..+|.+.|++++|...++.. .+.| +..+|..+..++...|++++|...++++++++|.++.+...+..+..+
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK 144 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35666778889999999999998887 4445 588999999999999999999999999999999998888877777666
Q ss_pred CCCch-HHHHHHHHHh
Q 008183 418 VGRWD-EVAEVRKVMK 432 (575)
Q Consensus 418 ~g~~~-~a~~~~~~m~ 432 (575)
.+... ...+++..|.
T Consensus 145 ~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 145 AKEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHH
Confidence 55443 3444444443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.72 E-value=0.00014 Score=60.69 Aligned_cols=64 Identities=6% Similarity=-0.027 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCC
Q 008183 372 AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435 (575)
Q Consensus 372 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 435 (575)
.+|+.+..+|.+.|++++|+..++++++++|.++.++..++.+|...|++++|...|++..+..
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 126 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 126 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 4677788899999999999999999999999999999999999999999999999999987643
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.71 E-value=0.018 Score=52.83 Aligned_cols=246 Identities=12% Similarity=0.036 Sum_probs=136.5
Q ss_pred CCchhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHH
Q 008183 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211 (575)
Q Consensus 132 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 211 (575)
.||..-...+.+.|.+.|.++.|..+|..+.. |.-++..+.+.+++..|.+++.+. -+..+|..+..+|
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d-----~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l 79 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFAC 79 (336)
T ss_dssp CC----------------CTTTHHHHHHHTTC-----HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC-----HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHH
Confidence 34444455677788899999999999987754 788888899999999999888765 2556888888888
Q ss_pred HhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHH
Q 008183 212 AELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLE 289 (575)
Q Consensus 212 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~ 289 (575)
.+......+ ++.......+......++..|-..|.+++...++...+. ..+...++-++..|++.+ +++..+
T Consensus 80 ~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e 153 (336)
T d1b89a_ 80 VDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMRE 153 (336)
T ss_dssp HHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHH
T ss_pred HhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHH
Confidence 776655443 222233344556667788888888999988888886443 556667778888887754 333333
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCC
Q 008183 290 LFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEP 369 (575)
Q Consensus 290 l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 369 (575)
.++.. +-..|. .-++..|.+.+.+++ ++-.|.+.|.+++|..+.-.=+ +
T Consensus 154 ~l~~~---s~~y~~---~k~~~~c~~~~l~~e-----------------------lv~Ly~~~~~~~~A~~~~i~~~--~ 202 (336)
T d1b89a_ 154 HLELF---WSRVNI---PKVLRAAEQAHLWAE-----------------------LVFLYDKYEEYDNAIITMMNHP--T 202 (336)
T ss_dssp HHHHH---STTSCH---HHHHHHHHTTTCHHH-----------------------HHHHHHHTTCHHHHHHHHHHST--T
T ss_pred HHHhc---cccCCH---HHHHHHHHHcCChHH-----------------------HHHHHHhcCCHHHHHHHHHHcc--h
Confidence 33222 111111 123344444444333 4445555566666655443321 2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHH
Q 008183 370 DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVR 428 (575)
Q Consensus 370 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 428 (575)
++.-....+..+.+..+.+...++....++..| .....|+......-+..++.+.+
T Consensus 203 ~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~~p---~~i~~lL~~v~~~~d~~r~V~~~ 258 (336)
T d1b89a_ 203 DAWKEGQFKDIITKVANVELYYRAIQFYLEFKP---LLLNDLLMVLSPRLDHTRAVNYF 258 (336)
T ss_dssp TTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCG---GGHHHHHHHHGGGCCHHHHHHHH
T ss_pred hhhhHHHHHHHHHccCChHHHHHHHHHHHHcCH---HHHHHHHHHhccCCCHHHHHHHH
Confidence 222233445556666666666666665555444 23344555555444444444444
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.68 E-value=4.3e-06 Score=83.82 Aligned_cols=113 Identities=11% Similarity=-0.104 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HHHHHHHHH
Q 008183 302 DEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEPD-AAVWRALLS 379 (575)
Q Consensus 302 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~ 379 (575)
+...+..+...+.+.|+.+.|...+...... .| ...+..+.+.+...|++++|...|++. .+.|+ ..+|+.|..
T Consensus 119 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~ 194 (497)
T d1ya0a1 119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSY---IC-QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAI 194 (497)
T ss_dssp ------------------------CCHHHHH---HH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHH
T ss_pred hHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC---CH-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence 3445555556666677777776665544211 11 245666777777777888887777776 44554 677777777
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhC
Q 008183 380 FSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGV 418 (575)
Q Consensus 380 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 418 (575)
.+...|+..+|...|.+.+...|+.+.++..|...|.+.
T Consensus 195 ~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 195 LASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence 777778888888888777777777777777777666543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.66 E-value=0.00048 Score=56.15 Aligned_cols=63 Identities=11% Similarity=-0.025 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 372 AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 372 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
.+|..+..+|.+.|++++|++.++++++.+|.+..+|..++.+|...|++++|...|++..+.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 466778888888899999999999988888888888888999999999999998888877654
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.65 E-value=0.00013 Score=56.01 Aligned_cols=19 Identities=11% Similarity=0.204 Sum_probs=8.1
Q ss_pred HHHhCCCchHHHHHHHHhH
Q 008183 175 GFAQNSRLVDSLSVFADMR 193 (575)
Q Consensus 175 ~~~~~g~~~~A~~~~~~m~ 193 (575)
.+.+.|++++|+..|++..
T Consensus 25 ~~~~~g~~~~A~~~~~~al 43 (112)
T d1hxia_ 25 SMLKLANLAEAALAFEAVC 43 (112)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHhhhc
Confidence 3344444444444444443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.63 E-value=6.9e-05 Score=59.29 Aligned_cols=92 Identities=9% Similarity=0.083 Sum_probs=75.0
Q ss_pred HHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCch-------hHHHHH
Q 008183 342 YTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDS-------AYVIVA 412 (575)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l~ 412 (575)
+..+...|.+.|++++|...|++. .+.| +..+|..+..+|...|++++|...++++++++|.++. +|..+.
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 345666788889999999988777 3445 5889999999999999999999999999998876654 555677
Q ss_pred HHHHhCCCchHHHHHHHHHhh
Q 008183 413 NVLSGVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 413 ~~~~~~g~~~~a~~~~~~m~~ 433 (575)
..+...+++++|...+++-..
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 788889999999999987654
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.63 E-value=0.00047 Score=56.23 Aligned_cols=125 Identities=6% Similarity=-0.091 Sum_probs=89.0
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 008183 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISA 348 (575)
Q Consensus 269 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 348 (575)
..+......+.+.|++.+|+..|.+....-... ....-......... ....+|+.+...
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~-------------~~~~~~~~~~~~~~--------~~~~~~~Nla~~ 76 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHT-------------EEWDDQILLDKKKN--------IEISCNLNLATC 76 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTC-------------TTCCCHHHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcch-------------hhhhhHHHHHhhhh--------HHHHHHhhHHHH
Confidence 456666777888899999998888876531100 00000000000010 113467778889
Q ss_pred HhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 008183 349 MGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANV 414 (575)
Q Consensus 349 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 414 (575)
|.+.|++++|.+.+++. .+.| ++.+|..+..++...|++++|...+++.++++|.+..+...+..+
T Consensus 77 ~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~ 144 (153)
T d2fbna1 77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELC 144 (153)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999886 4556 589999999999999999999999999999999998776655443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.62 E-value=0.00018 Score=60.51 Aligned_cols=117 Identities=10% Similarity=0.019 Sum_probs=82.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHH
Q 008183 311 TALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA 390 (575)
Q Consensus 311 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a 390 (575)
......|++++|.+.|..... +.+.... ..+...........-++. .....+..+...+...|++++|
T Consensus 19 ~~~~~~g~~e~A~~~~~~AL~---l~rG~~l-----~~~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~~~~A 86 (179)
T d2ff4a2 19 VHAAAAGRFEQASRHLSAALR---EWRGPVL-----DDLRDFQFVEPFATALVE----DKVLAHTAKAEAEIACGRASAV 86 (179)
T ss_dssp HHHHHTTCHHHHHHHHHHHHT---TCCSSTT-----GGGTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHh---hCccccc-----ccCcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCchHH
Confidence 456778999999988887743 2222110 000000011111111111 1246778899999999999999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhh-----CCCccC
Q 008183 391 SKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD-----RRVRKE 439 (575)
Q Consensus 391 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~ 439 (575)
...++++++.+|.+...|..++.+|...|++++|.+.|+++.. -|+.|.
T Consensus 87 l~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~ 140 (179)
T d2ff4a2 87 IAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG 140 (179)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 9999999999999999999999999999999999999998753 577654
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.46 E-value=0.00024 Score=59.18 Aligned_cols=65 Identities=12% Similarity=0.051 Sum_probs=60.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 370 DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 370 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
+...|..+..++.+.|++++|+..+.++++++|.++.+|..++.+|...|++++|...|++..+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 35678888899999999999999999999999999999999999999999999999999988864
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.28 E-value=0.0012 Score=54.61 Aligned_cols=63 Identities=5% Similarity=-0.017 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 372 AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 372 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
.+|+.+..+|.+.|++++|+..++++++++|.+..+|..++.+|...|++++|...|++..+.
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456678888999999999999999999999999999999999999999999999999998764
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.23 E-value=0.0023 Score=50.01 Aligned_cols=55 Identities=9% Similarity=0.013 Sum_probs=26.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008183 274 MMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERM 329 (575)
Q Consensus 274 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 329 (575)
+...|.+.|++++|+..|.+..+... .+...+..+..+|.+.|++++|...+...
T Consensus 10 ~G~~~~~~~~y~~Ai~~y~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 64 (128)
T d1elra_ 10 LGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKA 64 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHhHHHHHHHcCchHHHHHHHHHH
Confidence 34444555555555555555544321 23444445555555555555555555544
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.04 E-value=0.0053 Score=51.06 Aligned_cols=72 Identities=18% Similarity=0.186 Sum_probs=49.3
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----hcCCCCChhH
Q 008183 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV----RYKLEPGLEH 341 (575)
Q Consensus 269 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~ 341 (575)
..+..+...+...|++++|+..++++.+.. +-+...+..++.++...|+.++|.+.|+++.. +.|+.|...+
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 456667777777777777777777777653 23667777777777777777777777776532 3567776543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.01 E-value=0.0013 Score=53.61 Aligned_cols=63 Identities=22% Similarity=0.011 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-------C----CchhHHHHHHHHHhCCCchHHHHHHHHHhh
Q 008183 371 AAVWRALLSFSAIHGKADMASKMGKRLIDINP-------Y----DDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 371 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p-------~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 433 (575)
..+|+.+..+|...|++++|...+++.+++.| . ...++..+..+|...|++++|...|++..+
T Consensus 55 a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 55 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888999888888888776432 1 122577889999999999999999998764
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.99 E-value=0.0011 Score=53.19 Aligned_cols=74 Identities=8% Similarity=0.074 Sum_probs=45.1
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC-----------ChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCch
Q 008183 356 EDAERIAMAM-PFEP-DAAVWRALLSFSAIHG-----------KADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWD 422 (575)
Q Consensus 356 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g-----------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 422 (575)
++|...|++. .+.| +..+|..+..+|...| ++++|.+.|+++++++|.+...+..|... .
T Consensus 58 ~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~ 130 (145)
T d1zu2a1 58 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT-------A 130 (145)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------H
T ss_pred HHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH-------H
Confidence 3444444443 2334 2455555555554432 36889999999999999887665555444 3
Q ss_pred HHHHHHHHHhhCCC
Q 008183 423 EVAEVRKVMKDRRV 436 (575)
Q Consensus 423 ~a~~~~~~m~~~~~ 436 (575)
.|.+++.+..++|+
T Consensus 131 ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 131 KAPQLHAEAYKQGL 144 (145)
T ss_dssp THHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHhc
Confidence 56667766666654
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.97 E-value=0.0023 Score=46.92 Aligned_cols=70 Identities=17% Similarity=0.048 Sum_probs=52.5
Q ss_pred HHHHHHHhccCChHHHHHHHHhC----C----CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHH
Q 008183 343 TCLISAMGRAGRLEDAERIAMAM----P----FEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVA 412 (575)
Q Consensus 343 ~~li~~~~~~g~~~~A~~~~~~m----~----~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 412 (575)
-.+...+.+.|++++|...|++. + ..++ ..++..|..++.+.|++++|...++++++++|.++.++..+.
T Consensus 9 ~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~ 87 (95)
T d1tjca_ 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (95)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 34555666677777776666554 1 1233 567888999999999999999999999999999988776653
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.79 E-value=0.00049 Score=68.35 Aligned_cols=106 Identities=12% Similarity=-0.066 Sum_probs=41.5
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHc
Q 008183 204 VSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQ 281 (575)
Q Consensus 204 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~ 281 (575)
+..+...+.+.++.+.|...+....+.. + ...+..+.+.+...|++++|...|++++. +.+...|+.|...|...
T Consensus 123 ~~~lg~~~~~~~~~~~A~~~~~~al~~~--~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~ 199 (497)
T d1ya0a1 123 SSQLGIISNKQTHTSAIVKPQSSSCSYI--C-QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSK 199 (497)
T ss_dssp --------------------CCHHHHHH--H-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHT
T ss_pred HHHhHHHHHhCCCHHHHHHHHHHHhCCC--H-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHc
Confidence 3344444444555555544444333321 1 13344455555555555555555555333 33344555555555555
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008183 282 GDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313 (575)
Q Consensus 282 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 313 (575)
|+..+|+..|.+..... +|-..++..|...+
T Consensus 200 ~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~ 230 (497)
T d1ya0a1 200 GDHLTTIFYYCRSIAVK-FPFPAASTNLQKAL 230 (497)
T ss_dssp TCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHH
Confidence 55555555555554432 33444455544443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.78 E-value=0.0034 Score=50.23 Aligned_cols=96 Identities=17% Similarity=0.058 Sum_probs=49.7
Q ss_pred hcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcc----------CCHHHHHHHHhhhCC--CCChhhHHHHHHHHHH
Q 008183 213 ELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKA----------GIVSDARRVFDENLS--VLNSIAWNAMMAGYAQ 280 (575)
Q Consensus 213 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~----------g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~ 280 (575)
+.+.+++|.+.++..++.. |.+..++..+..+|... +.+++|.+.|++++. +.+..+|+.+..+|..
T Consensus 9 r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~ 87 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 87 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHH
Confidence 3445555555555555553 44455555555555432 234556666655433 4455566666666554
Q ss_pred cCC-----------hHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008183 281 QGD-----------QSTVLELFHLLEMRGFAPDEYSFLAVLT 311 (575)
Q Consensus 281 ~g~-----------~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 311 (575)
.|+ +++|.+.|++..+ +.|+..++..-+.
T Consensus 88 ~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L~ 127 (145)
T d1zu2a1 88 FAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLE 127 (145)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred cccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHHHHH
Confidence 432 4556666666555 3455555444443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.76 E-value=0.0025 Score=56.83 Aligned_cols=125 Identities=14% Similarity=0.078 Sum_probs=74.7
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHH
Q 008183 279 AQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLED 357 (575)
Q Consensus 279 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~ 357 (575)
.+.|++++|+..+++..+.. +-|...+..+...++..|++++|...++.... +.|+ ...+..+...+...+..++
T Consensus 7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~---l~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHhccccHH
Confidence 34577777777777777653 23566777777777777777777777776642 3455 3444444444443344443
Q ss_pred HHHHHHhC--CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchh
Q 008183 358 AERIAMAM--PFEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSA 407 (575)
Q Consensus 358 A~~~~~~m--~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 407 (575)
+..-.... ...|+ ...+......+...|+.++|...++++.+..|..+..
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~ 135 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 135 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcc
Confidence 33222111 11232 3334444556677788888888888888888766543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.54 E-value=0.011 Score=47.78 Aligned_cols=62 Identities=13% Similarity=0.033 Sum_probs=38.8
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhC--------CCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 008183 341 HYTCLISAMGRAGRLEDAERIAMAM--------PFEPD-----AAVWRALLSFSAIHGKADMASKMGKRLIDINP 402 (575)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 402 (575)
.|+.+..+|.+.|++++|...+++. ...++ ...+..+..+|...|++++|...|++++++.|
T Consensus 57 ~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~ 131 (156)
T d2hr2a1 57 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 131 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3444555555555555555444433 11222 23567778889999999999999999887654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.46 E-value=0.0016 Score=58.19 Aligned_cols=20 Identities=10% Similarity=0.154 Sum_probs=9.9
Q ss_pred HHHHhccCChHHHHHHHHhC
Q 008183 346 ISAMGRAGRLEDAERIAMAM 365 (575)
Q Consensus 346 i~~~~~~g~~~~A~~~~~~m 365 (575)
...+.+.|+.++|.+.+++.
T Consensus 106 a~~~~~~gd~~~A~~~~~~a 125 (264)
T d1zbpa1 106 FNLSMVSQDYEQVSELALQI 125 (264)
T ss_dssp HHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHH
Confidence 33444555555555555443
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.01 E-value=0.19 Score=37.51 Aligned_cols=141 Identities=13% Similarity=0.146 Sum_probs=102.8
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHH
Q 008183 278 YAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLED 357 (575)
Q Consensus 278 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 357 (575)
+.-.|..++..++..+.... .+..-|+.+|--....-+-+-..+.++.+-.-+.+ ..++++..
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDl--------------s~C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCc--------------hhhhcHHH
Confidence 45567888888888877664 25566677776666666777777777766333333 23555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCCCc
Q 008183 358 AERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVR 437 (575)
Q Consensus 358 A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 437 (575)
....+-.++ .+....+..+....+.|+-+.-.++++.+.+.+..++....-+.++|.+-|...++..++.+..++|++
T Consensus 75 vv~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 75 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 555555553 334455667788888999999999999988877778888999999999999999999999999999985
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.95 E-value=0.73 Score=43.78 Aligned_cols=54 Identities=6% Similarity=-0.134 Sum_probs=28.1
Q ss_pred HHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCC
Q 008183 142 VHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196 (575)
Q Consensus 142 i~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 196 (575)
+..+++.+++......+..-+ .+...-.....+..+.|+..+|.+.+...-..|
T Consensus 79 l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~ 132 (450)
T d1qsaa1 79 VNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG 132 (450)
T ss_dssp HHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred HHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Confidence 344555666655554443211 133333345556666777777766666554443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.47 E-value=0.019 Score=41.69 Aligned_cols=62 Identities=8% Similarity=-0.102 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-------chhHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYD-------DSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 373 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
.+-.+...+.+.|++++|...++++++..|.+ ..++..|..+|.+.|++++|...+++..+.
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 34467788899999999999999998765432 347888999999999999999999998764
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.25 E-value=0.31 Score=37.37 Aligned_cols=12 Identities=17% Similarity=0.089 Sum_probs=6.1
Q ss_pred CHHHHHHHHHHH
Q 008183 318 LAGESEKWIERM 329 (575)
Q Consensus 318 ~~~~a~~~~~~m 329 (575)
+.++|.++|...
T Consensus 110 d~~~A~~~~~~A 121 (133)
T d1klxa_ 110 NEKQAVKTFEKA 121 (133)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 455555555544
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=92.58 E-value=1.6 Score=33.09 Aligned_cols=16 Identities=6% Similarity=0.181 Sum_probs=7.9
Q ss_pred CchHHHHHHHHhHHCC
Q 008183 181 RLVDSLSVFADMRSSD 196 (575)
Q Consensus 181 ~~~~A~~~~~~m~~~g 196 (575)
|+++|++.|++..+.|
T Consensus 8 d~~~A~~~~~kaa~~g 23 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN 23 (133)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC
Confidence 3445555555554443
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=86.54 E-value=4.8 Score=29.77 Aligned_cols=84 Identities=11% Similarity=-0.068 Sum_probs=57.2
Q ss_pred ccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008183 248 KAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIE 327 (575)
Q Consensus 248 ~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 327 (575)
+|+++......+-. + ..+....+.-+..+.+.|+-++-.++++.+.+. -+|++.....+..||.+.|+..++.+++.
T Consensus 68 ~C~Nlk~vv~C~~~-~-n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~ 144 (161)
T d1wy6a1 68 KCQNLKSVVECGVI-N-NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLI 144 (161)
T ss_dssp GCSCTHHHHHHHHH-T-TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhhcHHHHHHHHHH-h-cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 44555555554443 2 223344555677788888888888888887663 56777778888889999999999998888
Q ss_pred HHHHhcCC
Q 008183 328 RMKVRYKL 335 (575)
Q Consensus 328 ~m~~~~~~ 335 (575)
+..+ .|+
T Consensus 145 ~ACe-~G~ 151 (161)
T d1wy6a1 145 EACK-KGE 151 (161)
T ss_dssp HHHH-TTC
T ss_pred HHHH-HhH
Confidence 8743 354
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.16 E-value=1.2 Score=33.26 Aligned_cols=51 Identities=12% Similarity=-0.014 Sum_probs=26.8
Q ss_pred hHHHHHHHHhC-CCCC-C-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCc
Q 008183 355 LEDAERIAMAM-PFEP-D-AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDD 405 (575)
Q Consensus 355 ~~~A~~~~~~m-~~~p-~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 405 (575)
.+++..++++. ...| + ...+-.|.-+|.+.|++++|.+.++.+++.+|.+.
T Consensus 54 ~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~ 107 (124)
T d2pqrb1 54 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 107 (124)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcH
Confidence 34555555554 1123 2 23444555556666666666666666666666554
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.40 E-value=2.3 Score=29.86 Aligned_cols=63 Identities=19% Similarity=0.132 Sum_probs=49.3
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 008183 283 DQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLIS 347 (575)
Q Consensus 283 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 347 (575)
+..++.+-++.+....+.|+.....+.+.||.+.+++..|.++|+.++.+.+ ++...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~--~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CcHHHHHHHHH
Confidence 3445666667777778899999999999999999999999999998866544 34556766653
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.74 E-value=3.5 Score=30.56 Aligned_cols=45 Identities=13% Similarity=0.019 Sum_probs=21.8
Q ss_pred CHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHhccCChHHHHHHHHhC
Q 008183 318 LAGESEKWIERMKVRYKLEPG--LEHYTCLISAMGRAGRLEDAERIAMAM 365 (575)
Q Consensus 318 ~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (575)
++++|..+++.+... .|. ...+--|.-+|.+.|++++|.+.++..
T Consensus 53 d~~~gI~lLe~~~~~---~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~ 99 (124)
T d2pqrb1 53 DERLGVKILTDIYKE---AESRRRECLYYLTIGCYKLGEYSMAKRYVDTL 99 (124)
T ss_dssp HHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc---CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 334555555555321 222 123334444555666666666655554
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=82.53 E-value=4.4 Score=28.38 Aligned_cols=63 Identities=13% Similarity=0.016 Sum_probs=47.1
Q ss_pred CchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 008183 181 RLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLID 244 (575)
Q Consensus 181 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 244 (575)
+.-++.+-++.+-...+.|++....+.++||.+.+++..|.++++-+.... .++...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHHH
Confidence 344566677777778889999999999999999999999999998876543 334556665543
|