Citrus Sinensis ID: 008210

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570----
MVTLKAGSRPPWVGLGAAVWVQIAAGNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGENVGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLHNSSSKLLLVLAVGVPAVCLVMMYFVRPCTPASGEDSAAPSHFLFTQAASVVLGFFLLTTTILDHMIPLSASISYASLFIMIILLMAPLAIPVKMTICRKRTSESGILDQSVGSSDSVVRAGGDADKSEPLLDPSSSTTDLGSFRDNDDVSEVALLLAEGEGAVRRKKRRPKRGEDFKFTEAVVKADFWLLFLVYFAGVGSGVTVLNNLAQIGIAQGVHDTTILLSLFSFCNFVGRLGGGVVSEHFVRKTIPRTIWMTCTQVIMIITYLLFASSIDGTLYAATALLGICYGVQFSIMIPTVSELFGLEHFGLISNFLALGNPLAAFLFSGLLAGYIYDNEAAKQQGFNLLTSNVVSCLGPNCFRITFFVLAGVCCVGSILSIILNIRIRPVYQMLYAGGSFRLPQTSNK
cccccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHcccHHHHHHHHHHHHHHHHcccccHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccEEEEEccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHccccEEEEEcHHHHHHHccccccHHHHHHHHHcccHHHHccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccccccccc
ccEEccccccHHHHHHHHHHHHHHHccccccHcccHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHEEEHEEEHHccccHHHHHHHHHHHHcccccccccEEEEHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcHcEEEEHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccc
mvtlkagsrppwvgLGAAVWVQIAAgnaynfplyshSLKSVLGFNQHQLTMLGVANdigenvgllpglasnkfppwLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNmrnfplsrgtVAGILKGYGGLSAAVFTEIYNMLLHNSSSKLLLVLAVGVPAVCLVMMYfvrpctpasgedsaapshfLFTQAASVVLGFFLLTTTIldhmiplsasISYASLFIMIILLMaplaipvkMTICrkrtsesgildqsvgssdsvvraggdadkseplldpsssttdlgsfrdnddVSEVALLLAEGegavrrkkrrpkrgedfkfTEAVVKADFWLLFLVYFAGVGSGVTVLNNLAQIGIAQGVHDTTILLSLFSFCNFvgrlgggvvsehfvrktiprtiWMTCTQVIMIITYLLFASSIDGTLYAATALLGICYGVQFSIMIPTVSELFGLEHFGLISNFLALGNPLAAFLFSGLLAGYIYDNEAAKQQGFNLLTSNVVsclgpncfRITFFVLAGVCCVGSILSIILNIRIRPVYQMlyaggsfrlpqtsnk
mvtlkagsrppwvGLGAAVWVQIAAGNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGENVGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLHNSSSKLLLVLAVGVPAVCLVMMYFVRPCTPASGEDSAAPSHFLFTQAASVVLGFFLLTTTILDHMIPLSASISYASLFIMIILLMAPLAIPVKMTICRKRTsesgildqsvgssdSVVRAGgdadkseplldpsssttdlgsfrdNDDVSEVALLlaegegavrrkkrrpkrgedfkfteaVVKADFWLLFLVYFAGVGSGVTVLNNLAQIGIAQGVHDTTILLSLFSFCNFVGRLGGGVVSEHFVRKTIPRTIWMTCTQVIMIITYLLFASSIDGTLYAATALLGICYGVQFSIMIPTVSELFGLEHFGLISNFLALGNPLAAFLFSGLLAGYIYDNEAAKQQGFNLLTSNVVSCLGPNCFRITFFVLAGVCCVGSILSIILNIRIRPVYQMLYaggsfrlpqtsnk
MVTLKAGSRPPWVGLGAAVWVQIAAGNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGENVGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLHNSSSKlllvlavgvpavclvMMYFVRPCTPASGEDSAAPSHFLFTQAASVVLGFFLLTTTILDHMIPLSASISYASlfimiillmaplaipVKMTICRKRTSESGILDQSVGSSDSVVRAGGDADKSEPLLDPSSSTTDLGSFRDNDDVSEVALLLAEGEGAVRRKKRRPKRGEDFKFTEAVVKADFWLLFLVYFAGVGSGVTVLNNLAQIGIAQGVHDTTILLSLFSFCNFVGRLGGGVVSEHFVRKTIPRTIWMTCTQVIMIITYLLFASSIDGTLYAATALLGICYGVQFSIMIPTVSELFGLEHFGLISNFLALGNPlaaflfsgllagYIYDNEAAKQQGFNLLTSNVVSCLGPNCFRITFFVLAGVCCVGsilsiilnirirPVYQMLYAGGSFRLPQTSNK
**********PWVGLGAAVWVQIAAGNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGENVGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLHNSSSKLLLVLAVGVPAVCLVMMYFVRPCTPA******APSHFLFTQAASVVLGFFLLTTTILDHMIPLSASISYASLFIMIILLMAPLAIPVKMTICRK****************************************************************************FKFTEAVVKADFWLLFLVYFAGVGSGVTVLNNLAQIGIAQGVHDTTILLSLFSFCNFVGRLGGGVVSEHFVRKTIPRTIWMTCTQVIMIITYLLFASSIDGTLYAATALLGICYGVQFSIMIPTVSELFGLEHFGLISNFLALGNPLAAFLFSGLLAGYIYDNEAAKQQGFNLLTSNVVSCLGPNCFRITFFVLAGVCCVGSILSIILNIRIRPVYQMLYAGGSF********
************VGLGAAVWVQIAAGNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGENVGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLHNSSSKLLLVLAVGVPAVCLVMMYFVRPCTPASGEDSAAPSHFLFTQAASVVLGFFLLTTTILDHMIPLSASISYASLFIMIILLMAPLAIPVKMTICRK*************************************************************************GEDFKFTEAVVKADFWLLFLVYFAGVGSGVTVLNNLAQIGIAQGVHDTTILLSLFSFCNFVGRLGGGVVSEHFVRKTIPRTIWMTCTQVIMIITYLLFASSIDGTLYAATALLGICYGVQFSIMIPTVSELFGLEHFGLISNFLALGNPLAAFLFSGLLAGYIYDNEAAKQ*****LTSNVVSCLGPNCFRITFFVLAGVCCVGSILSIILNIRIRPVY*****************
********RPPWVGLGAAVWVQIAAGNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGENVGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLHNSSSKLLLVLAVGVPAVCLVMMYFVRPCTPASGEDSAAPSHFLFTQAASVVLGFFLLTTTILDHMIPLSASISYASLFIMIILLMAPLAIPVKMTICRKRTSESGILDQSVGSSDSVVRAGGDADKSEPLLDPSSSTTDLGSFRDNDDVSEVALLLAEGE************GEDFKFTEAVVKADFWLLFLVYFAGVGSGVTVLNNLAQIGIAQGVHDTTILLSLFSFCNFVGRLGGGVVSEHFVRKTIPRTIWMTCTQVIMIITYLLFASSIDGTLYAATALLGICYGVQFSIMIPTVSELFGLEHFGLISNFLALGNPLAAFLFSGLLAGYIYDNEAAKQQGFNLLTSNVVSCLGPNCFRITFFVLAGVCCVGSILSIILNIRIRPVYQMLYAGGSFRLPQTSNK
*****AGSRPPWVGLGAAVWVQIAAGNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGENVGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLHNSSSKLLLVLAVGVPAVCLVMMYFVRPCTPASGEDSAAPSHFLFTQAASVVLGFFLLTTTILDHMIPLSASISYASLFIMIILLMAPLAIPVKMTICRKR****************************************************A*****GEGAVRRKKRRPKRGEDFKFTEAVVKADFWLLFLVYFAGVGSGVTVLNNLAQIGIAQGVHDTTILLSLFSFCNFVGRLGGGVVSEHFVRKTIPRTIWMTCTQVIMIITYLLFASSIDGTLYAATALLGICYGVQFSIMIPTVSELFGLEHFGLISNFLALGNPLAAFLFSGLLAGYIYDNEAAKQQGFNLLTSNVVSCLGPNCFRITFFVLAGVCCVGSILSIILNIRIRPVYQMLYAGG**********
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooo
oooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
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MVTLKAGSRPPWVGLGAAVWVQIAAGNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGENVGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLHNSSSKLLLVLAVGVPAVCLVMMYFVRPCTPASGEDSAAPSHFLFTQAASVVLGFFLLTTTILDHMIPLSASISYASLFIMIILLMAPLAIPVKMTICRKRTSESGILDQSVGSSDSVVRAGGDADKSEPLLDPSSSTTDLGSFRDNDDVSEVALLLAEGEGAVRRKKRRPKRGEDFKFTEAVVKADFWLLFLVYFAGVGSGVTVLNNLAQIGIAQGVHDTTILLSLFSFCNFVGRLGGGVVSEHFVRKTIPRTIWMTCTQVIMIITYLLFASSIDGTLYAATALLGICYGVQFSIMIPTVSELFGLEHFGLISNFLALGNPLAAFLFSGLLAGYIYDNEAAKQQGFNLLTSNVVSCLGPNCFRITFFVLAGVCCVGSILSIILNIRIRPVYQMLYAGGSFRLPQTSNK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query574 2.2.26 [Sep-21-2011]
Q03795547 Uncharacterized membrane yes no 0.756 0.793 0.224 4e-06
P37662402 Inner membrane protein Yh N/A no 0.219 0.313 0.263 0.0008
>sp|Q03795|YM30_YEAST Uncharacterized membrane protein YMR155W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YMR155W PE=1 SV=1 Back     alignment and function desciption
 Score = 53.5 bits (127), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 114/507 (22%), Positives = 196/507 (38%), Gaps = 73/507 (14%)

Query: 21  VQIAAGNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVL 79
           V + AG  Y F  Y+  L S         + L  +  IG + +G+L G+  ++  P L  
Sbjct: 28  VALGAGTPYLFSFYAPQLLSKCHIPVSASSKLSFSLTIGSSLMGILAGIVVDR-SPKLSC 86

Query: 80  FIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPLSR 139
            IGS+  F  Y +L L       S   +L+ ++L +    S     A +     NFP  R
Sbjct: 87  LIGSMCVFIAYLILNLCYKHEWSST--FLISLSLVLIGYGSVSGFYASVKCANTNFPQHR 144

Query: 140 GTVAGILKGYGGLSAAVFTEIYNMLLHNSSSKLLLVLAVGVPAVCLVMMYFVRPCTPASG 199
           GT         GLS  VF+ + + L   +   + + L V    + LV  + +   + A G
Sbjct: 145 GTAGAFPVSLYGLSGMVFSYLCSKLFGENIEHVFIFLMVACGCMILVGYFSLDIFSNAEG 204

Query: 200 EDSAAPSHFLFTQAASVVLGFFLLTTTILDHMIPL-SASISYASLFIMIILLMAPLAIPV 258
           +D            AS+       +    D+++PL   S  Y             +  PV
Sbjct: 205 DD------------ASIKEWELQKSRETDDNIVPLYENSNDY-------------IGSPV 239

Query: 259 KMTICRKRTSESGILDQSVGSSDSVVRAGGDADKSEPLLDPSSSTTDLGSFRDNDDVSEV 318
           + +     T E+  L  +   +            + PLL PSS  T    F D +     
Sbjct: 240 RSS--SPATYETYALSDNFQETSEFFALEDRQLSNRPLLSPSSPHTKY-DFEDENTSKNT 296

Query: 319 ALLLAEGEGAVRRKKRRPKRGEDFKFTEAVVKADFWLLF-------LVYFAGVGSGVTVL 371
                 GE + ++  R       F+  ++     ++++        L+Y   VG  V   
Sbjct: 297 V-----GENSAQKSMRL----HVFQSLKSSTFIGYYIVLGILQGVGLMYIYSVGFMVQAQ 347

Query: 372 NN---LAQIGI-AQGVHDTTI-LLSLFSFCNFVGRLGGGVVSEHFVRKTIPRTIWMTCTQ 426
            +   L Q+ I A+ +    + LLSL SFC   GRL  G +S+  V+K   + +W     
Sbjct: 348 VSTPPLNQLPINAEKIQSLQVTLLSLLSFC---GRLSSGPISDFLVKKFKAQRLWNIVIA 404

Query: 427 VIMI------ITYLLFASSIDGTLYAA---------TALLGICYGVQFSIMIPTVSELFG 471
            +++      I++  F+S  D +L A+         +A+ G  +GV F      V++ FG
Sbjct: 405 SLLVFLASNKISH-DFSSIEDPSLRASKSFKNISVCSAIFGYSFGVLFGTFPSIVADRFG 463

Query: 472 LEHFGLISNFLALGNPLAAFLFSGLLA 498
              +  +   L  G   +  +F+ +L 
Sbjct: 464 TNGYSTLWGVLTTGGVFSVSVFTDILG 490

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
>sp|P37662|YHJX_ECOLI Inner membrane protein YhjX OS=Escherichia coli (strain K12) GN=yhjX PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query574
255581273570 conserved hypothetical protein [Ricinus 0.987 0.994 0.794 0.0
359484689573 PREDICTED: uncharacterized protein LOC10 0.996 0.998 0.8 0.0
224120280580 predicted protein [Populus trichocarpa] 0.996 0.986 0.786 0.0
296084552512 unnamed protein product [Vitis vinifera] 0.890 0.998 0.775 0.0
356530583569 PREDICTED: uncharacterized membrane prot 0.987 0.996 0.704 0.0
356562916571 PREDICTED: uncharacterized membrane prot 0.987 0.992 0.726 0.0
356556543570 PREDICTED: uncharacterized membrane prot 0.987 0.994 0.704 0.0
356546146571 PREDICTED: uncharacterized membrane prot 0.991 0.996 0.720 0.0
357478399575 hypothetical protein MTR_4g116210 [Medic 0.991 0.989 0.689 0.0
225443039564 PREDICTED: uncharacterized membrane prot 0.979 0.996 0.693 0.0
>gi|255581273|ref|XP_002531448.1| conserved hypothetical protein [Ricinus communis] gi|223528941|gb|EEF30935.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  941 bits (2431), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/573 (79%), Positives = 515/573 (89%), Gaps = 6/573 (1%)

Query: 1   MVTLKAGSRPPWVGLGAAVWVQIAAGNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGE 60
           MV LKAGSRPPWVGLGAAVWVQIA+GNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGE
Sbjct: 1   MVRLKAGSRPPWVGLGAAVWVQIASGNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGE 60

Query: 61  NVGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSS 120
           NVGL+PG+A NKFPPW++L IG LACFFGYGVLWLAVSRTV+SLP+WLL++ALCV TNSS
Sbjct: 61  NVGLIPGIACNKFPPWVILLIGCLACFFGYGVLWLAVSRTVQSLPHWLLFLALCVGTNSS 120

Query: 121 AWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLHNSSSKLLLVLAVGV 180
           AWL TAVLVTNMRNFPLSRGTVAGILKGYGG+SAAVFT IY+MLL NSSSKLL+ LA+G+
Sbjct: 121 AWLSTAVLVTNMRNFPLSRGTVAGILKGYGGISAAVFTAIYSMLLDNSSSKLLMFLAIGI 180

Query: 181 PAVCLVMMYFVRPCTPASGEDSAAPSHFLFTQAASVVLGFFLLTTTILDHMIPLSASISY 240
           P +C +MMYFV+ CTPASGEDS+  SHFLF QA  V+LGF++L TTILDHM+ LS+ ISY
Sbjct: 181 PVLCFMMMYFVKACTPASGEDSSEHSHFLFIQATLVILGFYVLITTILDHMLHLSSPISY 240

Query: 241 ASLFIMIILLMAPLAIPVKMTICRKRTSESGILDQSVGSSDSVVRAGGDADKSEPLLDPS 300
           + L +MIIL+MAPLAIP+KMTICR R ++S +LDQSV SSD +V+A G+ +K+EPLL   
Sbjct: 241 SFLAMMIILVMAPLAIPIKMTICRTRATKSELLDQSVESSDCLVQAEGNGEKTEPLLKSQ 300

Query: 301 SSTTDLGSFRDNDDVSEVALLLAEGEGAVRRKKRRPKRGEDFKFTEAVVKADFWLLFLVY 360
           +     GSFR+ND+ SEVA+LLAEGEGAV +K+RRP+RGEDFKFTEA+VKADFWLLF VY
Sbjct: 301 T----FGSFRENDETSEVAMLLAEGEGAV-KKRRRPRRGEDFKFTEALVKADFWLLFFVY 355

Query: 361 FAGVGSGVTVLNNLAQIGIAQGVHDTTILLSLFSFCNFVGRLGGGVVSEHFVR-KTIPRT 419
           F GVGSGVTVLNNLAQIGIA GVHDTT LLSLFSFCNFVGRLGGG VSEHFVR +TIPRT
Sbjct: 356 FVGVGSGVTVLNNLAQIGIALGVHDTTTLLSLFSFCNFVGRLGGGTVSEHFVRSRTIPRT 415

Query: 420 IWMTCTQVIMIITYLLFASSIDGTLYAATALLGICYGVQFSIMIPTVSELFGLEHFGLIS 479
           IWMTCTQ++MIITYLLFAS+IDG LYAATALLGICYGVQFSIMIPTVSELFGL+HFG+  
Sbjct: 416 IWMTCTQIVMIITYLLFASAIDGILYAATALLGICYGVQFSIMIPTVSELFGLKHFGIFY 475

Query: 480 NFLALGNPLAAFLFSGLLAGYIYDNEAAKQQGFNLLTSNVVSCLGPNCFRITFFVLAGVC 539
           NF+++GNPL AFLFSGLLAGYIYD EAAKQQG NLL  + ++C+GPNCFR+TF VLAGVC
Sbjct: 476 NFISIGNPLGAFLFSGLLAGYIYDTEAAKQQGMNLLLGSSIACIGPNCFRLTFLVLAGVC 535

Query: 540 CVGSILSIILNIRIRPVYQMLYAGGSFRLPQTS 572
            VGSILS+IL +RI PVY+MLYAGGSFRLPQTS
Sbjct: 536 GVGSILSLILTMRIWPVYEMLYAGGSFRLPQTS 568

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359484689|ref|XP_002268798.2| PREDICTED: uncharacterized protein LOC100251745 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224120280|ref|XP_002331009.1| predicted protein [Populus trichocarpa] gi|222872939|gb|EEF10070.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|296084552|emb|CBI25573.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356530583|ref|XP_003533860.1| PREDICTED: uncharacterized membrane protein YMR155W-like [Glycine max] Back     alignment and taxonomy information
>gi|356562916|ref|XP_003549714.1| PREDICTED: uncharacterized membrane protein YMR155W-like [Glycine max] Back     alignment and taxonomy information
>gi|356556543|ref|XP_003546584.1| PREDICTED: uncharacterized membrane protein YMR155W-like [Glycine max] Back     alignment and taxonomy information
>gi|356546146|ref|XP_003541492.1| PREDICTED: uncharacterized membrane protein YMR155W-like [Glycine max] Back     alignment and taxonomy information
>gi|357478399|ref|XP_003609485.1| hypothetical protein MTR_4g116210 [Medicago truncatula] gi|355510540|gb|AES91682.1| hypothetical protein MTR_4g116210 [Medicago truncatula] Back     alignment and taxonomy information
>gi|225443039|ref|XP_002270754.1| PREDICTED: uncharacterized membrane protein YMR155W [Vitis vinifera] gi|297743570|emb|CBI36437.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query574
TAIR|locus:2198938561 AT1G80530 "AT1G80530" [Arabido 0.959 0.982 0.528 6.1e-158
TAIR|locus:2059829546 AT2G16660 [Arabidopsis thalian 0.416 0.437 0.388 1.5e-87
TAIR|locus:2116855567 AT4G34950 [Arabidopsis thalian 0.925 0.936 0.345 2.6e-86
TAIR|locus:2078643584 AT3G01930 [Arabidopsis thalian 0.958 0.941 0.332 1.1e-80
TAIR|locus:2174683579 AT5G14120 [Arabidopsis thalian 0.951 0.943 0.322 5.5e-77
TAIR|locus:2159752540 AT5G50520 [Arabidopsis thalian 0.425 0.451 0.358 3.7e-74
TAIR|locus:2832385540 AT5G50630 [Arabidopsis thalian 0.425 0.451 0.358 3.7e-74
TAIR|locus:2056103601 AT2G39210 "AT2G39210" [Arabido 0.414 0.396 0.306 4.3e-61
TAIR|locus:2046238577 AT2G28120 [Arabidopsis thalian 0.395 0.393 0.331 2.5e-60
TAIR|locus:2011241526 AT1G18940 [Arabidopsis thalian 0.358 0.391 0.363 6.1e-57
TAIR|locus:2198938 AT1G80530 "AT1G80530" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1539 (546.8 bits), Expect = 6.1e-158, P = 6.1e-158
 Identities = 301/570 (52%), Positives = 390/570 (68%)

Query:     5 KAGSRPPWVGLGAAVWVQIAAGNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGENVGL 64
             K+GSRPPWVGL AA WVQ++AG+   FPLYS +LKSVLGF+Q Q+T+LGVA D+GEN+GL
Sbjct:     7 KSGSRPPWVGLAAAAWVQVSAGSGSTFPLYSSALKSVLGFSQQQVTILGVACDLGENMGL 66

Query:    65 LPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLG 124
             LPG ASNK PPW +L IG+ +CF G+GVLWL+VS+ V  LP+WLL++AL +ATNS++W G
Sbjct:    67 LPGYASNKLPPWSMLLIGASSCFLGFGVLWLSVSQIVLGLPFWLLFVALALATNSNSWFG 126

Query:   125 TAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLHNSSSKXXXXXXXXXXXXX 184
             TA LVTNMRNFP+SRG VAG+LKGY G+S A FT +++M+LH+S+               
Sbjct:   127 TASLVTNMRNFPMSRGPVAGLLKGYIGISGAAFTVLFSMVLHHSAMDLLLFLTVGIPVIC 186

Query:   185 XXMMYFVRPCTPASGEDSAAPSHFLFTQAASVVLGFFLLTTTILDHMIPLSASISYASXX 244
               +MYF+RPC PA+GED + P +F F    S++   +L+ TT+L  +  L + + Y    
Sbjct:   187 LTVMYFIRPCIPATGEDPSEPMYFAFLLVTSILFAAYLVVTTVLSEVFILPSILKYVLVA 246

Query:   245 XXXXXXXXXXXXXVKMTICRKRTSESGILDQSVGSSDSVVRAGGDADKSEPLLDPSSSTT 304
                          +KMT+ R     S +     GSSD++ +  G  +  EPLL PS+S +
Sbjct:   247 IMVLLLLSPLAVPIKMTLFRSNAKSSPL-----GSSDNLAKEEGTHE--EPLLTPSTSAS 299

Query:   305 DLGSFRDNDDVSEVALLLAEGEGAVRRKKRRPKRGEDFKFTEAVVKADFWLLFLVYFAGV 364
             +LG   + DD S++ +LLAE EGAV+ KKR+P+RGEDFKF +  VKADFWLL+ VYF G+
Sbjct:   300 NLGPIFEGDDESDMEILLAEAEGAVK-KKRKPRRGEDFKFGQVFVKADFWLLWFVYFLGM 358

Query:   365 GSGVTVLNNLAQIGIAQGVHDTTILLSLFSFCNFVGRLGGGVVSEHFVR-KTIPRTIWMT 423
             GSGVTV NNLAQIG A G+ DTTILL LFSF NF+GRL  G +SEHFVR +T+PRT+WM 
Sbjct:   359 GSGVTVSNNLAQIGFAFGIKDTTILLCLFSFFNFIGRLASGAISEHFVRSRTLPRTLWMG 418

Query:   424 CTQVIMIITYLLFASSIDGTLYAATALLGICYGVQFSIMIPTVSELFGLEHFGLISNFLA 483
               Q++M+ T+LLFA +ID T+Y ATAL+GIC G QF + I T+SELFGL HFG+  NF+ 
Sbjct:   419 AAQLVMVFTFLLFAMAIDHTIYVATALIGICMGFQF-LSIATISELFGLRHFGINFNFIL 477

Query:   484 LGNPXXXXXXXXXXXXYIYDNEAAKQQGFNLLTSNVVSCLGPNCFRITFFVLAGVCCVGX 543
             LGNP            YIYD EA KQ          ++C+GP+CFR+TF VLAGVC +G 
Sbjct:   478 LGNPLGATIFSAILAGYIYDKEADKQ--------GKMTCIGPDCFRVTFLVLAGVCGLGT 529

Query:   544 XXXXXXXXXXXPVYQMLYAGGSFRL-PQTS 572
                        PVYQ LYA GSFRL PQ++
Sbjct:   530 LLSIILTVRIRPVYQALYASGSFRLQPQST 559
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=IDA
GO:0080167 "response to karrikin" evidence=IEP
TAIR|locus:2059829 AT2G16660 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2116855 AT4G34950 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2078643 AT3G01930 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174683 AT5G14120 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2159752 AT5G50520 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2832385 AT5G50630 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2056103 AT2G39210 "AT2G39210" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2046238 AT2G28120 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2011241 AT1G18940 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.01520047
hypothetical protein (580 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query574
pfam06813248 pfam06813, Nodulin-like, Nodulin-like 1e-105
TIGR00890377 TIGR00890, 2A0111, oxalate/formate antiporter fami 1e-11
cd06174352 cd06174, MFS, The Major Facilitator Superfamily (M 2e-04
pfam07690 346 pfam07690, MFS_1, Major Facilitator Superfamily 0.002
cd06174 352 cd06174, MFS, The Major Facilitator Superfamily (M 0.003
>gnl|CDD|219187 pfam06813, Nodulin-like, Nodulin-like Back     alignment and domain information 
 Score =  315 bits (809), Expect = e-105
 Identities = 123/248 (49%), Positives = 164/248 (66%)

Query: 11  PWVGLGAAVWVQIAAGNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGENVGLLPGLAS 70
            W+GL AA+W+Q  AG  Y+F LYS +LKS LG++Q QL +LGVA D+G+N G L GLA+
Sbjct: 1   RWLGLVAAIWIQSFAGANYDFSLYSSALKSSLGYSQVQLNLLGVAKDLGKNFGWLSGLAA 60

Query: 71  NKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVT 130
              PPW+VL +G+   F GYGV WLAV+  +  LPYWLL +A+C+A NS  W  TA LVT
Sbjct: 61  EYLPPWVVLLVGAAMGFVGYGVQWLAVTGKIPGLPYWLLCLAICLAGNSICWFNTASLVT 120

Query: 131 NMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLHNSSSKLLLVLAVGVPAVCLVMMYF 190
            +RNFP SRG V GILKGY GLSAA++T++Y  +  N +S LLL+ A+    V LV +YF
Sbjct: 121 CIRNFPESRGVVLGILKGYAGLSAAIYTQLYTAIFGNDASSLLLLNALVPLVVSLVALYF 180

Query: 191 VRPCTPASGEDSAAPSHFLFTQAASVVLGFFLLTTTILDHMIPLSASISYASLFIMIILL 250
           +RPC    GE  +    FL     SV L  +L+  +IL     LS++  YA   IM++LL
Sbjct: 181 IRPCPGKVGEQRSESVVFLVFNVLSVALAVYLVAMSILSKSFDLSSAEYYALGAIMVLLL 240

Query: 251 MAPLAIPV 258
           + PLA+P+
Sbjct: 241 LVPLAVPI 248

This family represents a conserved region within plant nodulin-like proteins. Length = 248
>gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter Back     alignment and domain information
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters Back     alignment and domain information
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily Back     alignment and domain information
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 574
PTZ00207591 hypothetical protein; Provisional 100.0
TIGR00890377 2A0111 Oxalate/Formate Antiporter. 100.0
KOG2504509 consensus Monocarboxylate transporter [Carbohydrat 100.0
PRK09705393 cynX putative cyanate transporter; Provisional 99.98
PRK09556467 uhpT sugar phosphate antiporter; Reviewed 99.98
TIGR00892455 2A0113 monocarboxylate transporter 1. 99.97
PRK11551406 putative 3-hydroxyphenylpropionic transporter MhpT 99.97
PRK11663434 regulatory protein UhpC; Provisional 99.97
TIGR01299742 synapt_SV2 synaptic vesicle protein SV2. This mode 99.97
PRK11273452 glpT sn-glycerol-3-phosphate transporter; Provisio 99.97
COG2271448 UhpC Sugar phosphate permease [Carbohydrate transp 99.97
COG2223417 NarK Nitrate/nitrite transporter [Inorganic ion tr 99.97
TIGR02332412 HpaX 4-hydroxyphenylacetate permease. This protein 99.97
PRK14995495 methyl viologen resistance protein SmvA; Provision 99.97
PRK03545390 putative arabinose transporter; Provisional 99.97
PRK12307426 putative sialic acid transporter; Provisional 99.97
TIGR00903368 2A0129 major facilitator 4 family protein. This fa 99.96
PRK15034462 nitrate/nitrite transport protein NarU; Provisiona 99.96
COG2814394 AraJ Arabinose efflux permease [Carbohydrate trans 99.96
TIGR00893399 2A0114 d-galactonate transporter. 99.96
TIGR00891405 2A0112 putative sialic acid transporter. 99.96
PRK03699394 putative transporter; Provisional 99.96
PRK05122399 major facilitator superfamily transporter; Provisi 99.96
PRK10642490 proline/glycine betaine transporter; Provisional 99.96
PLN00028476 nitrate transmembrane transporter; Provisional 99.96
TIGR00879481 SP MFS transporter, sugar porter (SP) family. This 99.96
TIGR00894465 2A0114euk Na(+)-dependent inorganic phosphate cotr 99.96
PRK10406432 alpha-ketoglutarate transporter; Provisional 99.96
PRK12382392 putative transporter; Provisional 99.96
PRK10504471 putative transporter; Provisional 99.95
TIGR00712438 glpT glycerol-3-phosphate transporter. This model 99.95
PRK10077479 xylE D-xylose transporter XylE; Provisional 99.95
PRK10213394 nepI ribonucleoside transporter; Reviewed 99.95
TIGR00887502 2A0109 phosphate:H+ symporter. This model represen 99.95
PRK03893496 putative sialic acid transporter; Provisional 99.95
PRK09952438 shikimate transporter; Provisional 99.95
TIGR00711485 efflux_EmrB drug resistance transporter, EmrB/QacA 99.95
PF06813250 Nodulin-like: Nodulin-like; InterPro: IPR010658 Th 99.95
TIGR00898505 2A0119 cation transport protein. 99.95
PRK10091382 MFS transport protein AraJ; Provisional 99.95
PRK03633381 putative MFS family transporter protein; Provision 99.95
PRK15402406 multidrug efflux system translocase MdfA; Provisio 99.94
TIGR00897402 2A0118 polyol permease family. This family of prot 99.94
PRK15075434 citrate-proton symporter; Provisional 99.94
TIGR00895398 2A0115 benzoate transport. 99.94
TIGR00881379 2A0104 phosphoglycerate transporter family protein 99.94
TIGR00900365 2A0121 H+ Antiporter protein. 99.94
PRK09874408 drug efflux system protein MdtG; Provisional 99.94
PRK10489417 enterobactin exporter EntS; Provisional 99.94
PRK11646400 multidrug resistance protein MdtH; Provisional 99.94
TIGR00896355 CynX cyanate transporter. This family of proteins 99.94
TIGR00885410 fucP L-fucose:H+ symporter permease. This family d 99.93
TIGR00710385 efflux_Bcr_CflA drug resistance transporter, Bcr/C 99.93
PRK10133438 L-fucose transporter; Provisional 99.93
PRK11043401 putative transporter; Provisional 99.93
TIGR00899375 2A0120 sugar efflux transporter. This family of pr 99.93
cd06174352 MFS The Major Facilitator Superfamily (MFS) is a l 99.92
KOG2532466 consensus Permease of the major facilitator superf 99.92
PRK10054395 putative transporter; Provisional 99.92
PF07690352 MFS_1: Major Facilitator Superfamily; InterPro: IP 99.92
PRK15403413 multidrug efflux system protein MdtM; Provisional 99.92
KOG0569485 consensus Permease of the major facilitator superf 99.92
PRK10473392 multidrug efflux system protein MdtL; Provisional 99.92
PRK11195393 lysophospholipid transporter LplT; Provisional 99.91
PRK11102377 bicyclomycin/multidrug efflux system; Provisional 99.91
TIGR00886366 2A0108 nitrite extrusion protein (nitrite facilita 99.91
PRK09528420 lacY galactoside permease; Reviewed 99.91
TIGR00889418 2A0110 nucleoside transporter. This family of prot 99.91
PRK11652394 emrD multidrug resistance protein D; Provisional 99.91
TIGR00883394 2A0106 metabolite-proton symporter. This model rep 99.91
PRK11010491 ampG muropeptide transporter; Validated 99.91
PF06609599 TRI12: Fungal trichothecene efflux pump (TRI12); I 99.9
TIGR00902382 2A0127 phenyl proprionate permease family protein. 99.9
PRK15011393 sugar efflux transporter B; Provisional 99.9
COG0738422 FucP Fucose permease [Carbohydrate transport and m 99.9
PRK10207489 dipeptide/tripeptide permease B; Provisional 99.89
COG2807395 CynX Cyanate permease [Inorganic ion transport and 99.89
PRK08633 1146 2-acyl-glycerophospho-ethanolamine acyltransferase 99.88
PRK06814 1140 acylglycerophosphoethanolamine acyltransferase; Pr 99.88
PRK11128382 putative 3-phenylpropionic acid transporter; Provi 99.88
TIGR00882396 2A0105 oligosaccharide:H+ symporter. 99.88
KOG2533495 consensus Permease of the major facilitator superf 99.86
KOG0254513 consensus Predicted transporter (major facilitator 99.86
PRK11902402 ampG muropeptide transporter; Reviewed 99.86
TIGR00901356 2A0125 AmpG-related permease. 99.86
TIGR00792437 gph sugar (Glycoside-Pentoside-Hexuronide) transpo 99.85
TIGR00924475 yjdL_sub1_fam amino acid/peptide transporter (Pept 99.85
KOG0253528 consensus Synaptic vesicle transporter SV2 (major 99.85
KOG0252538 consensus Inorganic phosphate transporter [Inorgan 99.84
KOG1330493 consensus Sugar transporter/spinster transmembrane 99.84
KOG3764464 consensus Vesicular amine transporter [Intracellul 99.84
PRK09584500 tppB putative tripeptide transporter permease; Rev 99.83
TIGR02718390 sider_RhtX_FptX siderophore transporter, RhtX/FptX 99.83
PF05977 524 MFS_3: Transmembrane secretion effector; InterPro: 99.82
PF00083451 Sugar_tr: Sugar (and other) transporter; InterPro: 99.82
TIGR00806511 rfc RFC reduced folate carrier. Proteins of the RF 99.81
KOG2563480 consensus Permease of the major facilitator superf 99.8
KOG4686459 consensus Predicted sugar transporter [Carbohydrat 99.8
KOG0255521 consensus Synaptic vesicle transporter SVOP and re 99.79
PRK15462493 dipeptide/tripeptide permease D; Provisional 99.75
TIGR00805633 oat sodium-independent organic anion transporter. 99.73
PRK09669444 putative symporter YagG; Provisional 99.73
PRK09848448 glucuronide transporter; Provisional 99.72
TIGR01301477 GPH_sucrose GPH family sucrose/H+ symporter. This 99.7
TIGR01272310 gluP glucose/galactose transporter. Disruption of 99.69
PF03825400 Nuc_H_symport: Nucleoside H+ symporter 99.68
PRK10429473 melibiose:sodium symporter; Provisional 99.67
TIGR00788468 fbt folate/biopterin transporter. The only functio 99.67
PF01306412 LacY_symp: LacY proton/sugar symporter; InterPro: 99.66
PF13347428 MFS_2: MFS/sugar transport protein 99.64
PF11700477 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 99.62
KOG2615451 consensus Permease of the major facilitator superf 99.58
PRK11462460 putative transporter; Provisional 99.57
PF03209403 PUCC: PUCC protein; InterPro: IPR004896 This prote 99.53
COG3104498 PTR2 Dipeptide/tripeptide permease [Amino acid tra 99.47
COG2211467 MelB Na+/melibiose symporter and related transport 99.46
COG2270438 Permeases of the major facilitator superfamily [Ge 99.4
PRK11663 434 regulatory protein UhpC; Provisional 99.34
COG2814 394 AraJ Arabinose efflux permease [Carbohydrate trans 99.29
PRK10504 471 putative transporter; Provisional 99.29
PRK10054 395 putative transporter; Provisional 99.28
PF07690 352 MFS_1: Major Facilitator Superfamily; InterPro: IP 99.27
TIGR00710 385 efflux_Bcr_CflA drug resistance transporter, Bcr/C 99.26
PRK10091 382 MFS transport protein AraJ; Provisional 99.25
PRK10213 394 nepI ribonucleoside transporter; Reviewed 99.24
PRK03545 390 putative arabinose transporter; Provisional 99.24
TIGR02332 412 HpaX 4-hydroxyphenylacetate permease. This protein 99.23
TIGR00712 438 glpT glycerol-3-phosphate transporter. This model 99.22
TIGR00900 365 2A0121 H+ Antiporter protein. 99.21
PRK14995 495 methyl viologen resistance protein SmvA; Provision 99.21
TIGR00924 475 yjdL_sub1_fam amino acid/peptide transporter (Pept 99.21
TIGR00893 399 2A0114 d-galactonate transporter. 99.2
PRK03699 394 putative transporter; Provisional 99.2
PRK09584 500 tppB putative tripeptide transporter permease; Rev 99.19
TIGR00881 379 2A0104 phosphoglycerate transporter family protein 99.19
TIGR01299 742 synapt_SV2 synaptic vesicle protein SV2. This mode 99.19
TIGR00711 485 efflux_EmrB drug resistance transporter, EmrB/QacA 99.19
TIGR00891 405 2A0112 putative sialic acid transporter. 99.18
PRK11551 406 putative 3-hydroxyphenylpropionic transporter MhpT 99.17
PRK09874 408 drug efflux system protein MdtG; Provisional 99.17
PRK10473 392 multidrug efflux system protein MdtL; Provisional 99.17
PRK15403 413 multidrug efflux system protein MdtM; Provisional 99.16
COG2271 448 UhpC Sugar phosphate permease [Carbohydrate transp 99.16
TIGR00903 368 2A0129 major facilitator 4 family protein. This fa 99.16
PRK15462 493 dipeptide/tripeptide permease D; Provisional 99.16
PRK11646 400 multidrug resistance protein MdtH; Provisional 99.15
KOG2325488 consensus Predicted transporter/transmembrane prot 99.15
PRK11195 393 lysophospholipid transporter LplT; Provisional 99.15
TIGR00895 398 2A0115 benzoate transport. 99.14
PLN00028 476 nitrate transmembrane transporter; Provisional 99.13
PRK11102 377 bicyclomycin/multidrug efflux system; Provisional 99.13
PRK12307 426 putative sialic acid transporter; Provisional 99.13
PRK15402 406 multidrug efflux system translocase MdfA; Provisio 99.12
PRK10207 489 dipeptide/tripeptide permease B; Provisional 99.12
PRK11652 394 emrD multidrug resistance protein D; Provisional 99.12
PRK10489 417 enterobactin exporter EntS; Provisional 99.12
TIGR00886 366 2A0108 nitrite extrusion protein (nitrite facilita 99.11
PRK11273 452 glpT sn-glycerol-3-phosphate transporter; Provisio 99.11
TIGR00890 377 2A0111 Oxalate/Formate Antiporter. 99.11
PRK10642490 proline/glycine betaine transporter; Provisional 99.11
PRK15011393 sugar efflux transporter B; Provisional 99.1
PRK09556 467 uhpT sugar phosphate antiporter; Reviewed 99.1
TIGR00897 402 2A0118 polyol permease family. This family of prot 99.09
cd06174 352 MFS The Major Facilitator Superfamily (MFS) is a l 99.09
TIGR00892 455 2A0113 monocarboxylate transporter 1. 99.09
PRK09705 393 cynX putative cyanate transporter; Provisional 99.09
TIGR00880141 2_A_01_02 Multidrug resistance protein. 99.07
PRK03893 496 putative sialic acid transporter; Provisional 99.07
PF06609 599 TRI12: Fungal trichothecene efflux pump (TRI12); I 99.06
PRK09528 420 lacY galactoside permease; Reviewed 99.05
PF05631354 DUF791: Protein of unknown function (DUF791); Inte 99.05
PRK15034 462 nitrate/nitrite transport protein NarU; Provisiona 99.04
PF03137539 OATP: Organic Anion Transporter Polypeptide (OATP) 99.04
PRK11043 401 putative transporter; Provisional 99.04
PRK03633 381 putative MFS family transporter protein; Provision 99.02
TIGR00899375 2A0120 sugar efflux transporter. This family of pr 99.02
PRK05122 399 major facilitator superfamily transporter; Provisi 99.01
TIGR00882 396 2A0105 oligosaccharide:H+ symporter. 99.01
TIGR00880141 2_A_01_02 Multidrug resistance protein. 99.01
PRK12382 392 putative transporter; Provisional 99.0
TIGR00879 481 SP MFS transporter, sugar porter (SP) family. This 99.0
PF03092433 BT1: BT1 family; InterPro: IPR004324 Members of th 99.0
TIGR00889418 2A0110 nucleoside transporter. This family of prot 98.97
TIGR00894 465 2A0114euk Na(+)-dependent inorganic phosphate cotr 98.97
PRK10077 479 xylE D-xylose transporter XylE; Provisional 98.96
KOG2816463 consensus Predicted transporter ADD1 (major facili 98.92
KOG1330 493 consensus Sugar transporter/spinster transmembrane 98.92
TIGR00896 355 CynX cyanate transporter. This family of proteins 98.9
KOG3764 464 consensus Vesicular amine transporter [Intracellul 98.89
KOG2615 451 consensus Permease of the major facilitator superf 98.87
PRK10406 432 alpha-ketoglutarate transporter; Provisional 98.86
TIGR00806 511 rfc RFC reduced folate carrier. Proteins of the RF 98.85
TIGR00902382 2A0127 phenyl proprionate permease family protein. 98.85
PF01770412 Folate_carrier: Reduced folate carrier; InterPro: 98.85
TIGR00885 410 fucP L-fucose:H+ symporter permease. This family d 98.85
PTZ00207 591 hypothetical protein; Provisional 98.84
PRK09952 438 shikimate transporter; Provisional 98.83
PRK15075 434 citrate-proton symporter; Provisional 98.83
TIGR00883394 2A0106 metabolite-proton symporter. This model rep 98.8
COG2223 417 NarK Nitrate/nitrite transporter [Inorganic ion tr 98.77
TIGR00887 502 2A0109 phosphate:H+ symporter. This model represen 98.77
PRK11010 491 ampG muropeptide transporter; Validated 98.77
PF05977 524 MFS_3: Transmembrane secretion effector; InterPro: 98.76
TIGR00898 505 2A0119 cation transport protein. 98.76
PRK06814 1140 acylglycerophosphoethanolamine acyltransferase; Pr 98.74
PRK10133 438 L-fucose transporter; Provisional 98.72
PRK11902 402 ampG muropeptide transporter; Reviewed 98.7
TIGR00805 633 oat sodium-independent organic anion transporter. 98.68
KOG0255 521 consensus Synaptic vesicle transporter SVOP and re 98.68
PRK08633 1146 2-acyl-glycerophospho-ethanolamine acyltransferase 98.68
TIGR00901 356 2A0125 AmpG-related permease. 98.67
COG3104 498 PTR2 Dipeptide/tripeptide permease [Amino acid tra 98.66
KOG2532 466 consensus Permease of the major facilitator superf 98.65
TIGR01301 477 GPH_sucrose GPH family sucrose/H+ symporter. This 98.65
PRK11128382 putative 3-phenylpropionic acid transporter; Provi 98.64
KOG3098461 consensus Uncharacterized conserved protein [Funct 98.64
TIGR02718390 sider_RhtX_FptX siderophore transporter, RhtX/FptX 98.57
PF11700477 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 98.49
KOG0254 513 consensus Predicted transporter (major facilitator 98.48
KOG2533 495 consensus Permease of the major facilitator superf 98.44
KOG4332454 consensus Predicted sugar transporter [Carbohydrat 98.43
COG2270438 Permeases of the major facilitator superfamily [Ge 98.4
KOG2504 509 consensus Monocarboxylate transporter [Carbohydrat 98.37
TIGR01272310 gluP glucose/galactose transporter. Disruption of 98.34
PF01306 412 LacY_symp: LacY proton/sugar symporter; InterPro: 98.34
KOG3626735 consensus Organic anion transporter [Secondary met 98.32
KOG0569 485 consensus Permease of the major facilitator superf 98.28
TIGR00792437 gph sugar (Glycoside-Pentoside-Hexuronide) transpo 98.27
KOG0252 538 consensus Inorganic phosphate transporter [Inorgan 98.23
PF03825400 Nuc_H_symport: Nucleoside H+ symporter 98.22
COG2807 395 CynX Cyanate permease [Inorganic ion transport and 98.21
PF02487402 CLN3: CLN3 protein; InterPro: IPR003492 Batten's d 98.2
KOG4686459 consensus Predicted sugar transporter [Carbohydrat 98.19
PRK09848448 glucuronide transporter; Provisional 98.12
PRK10429 473 melibiose:sodium symporter; Provisional 98.01
PRK09669 444 putative symporter YagG; Provisional 98.0
PF00083 451 Sugar_tr: Sugar (and other) transporter; InterPro: 97.99
PF06813250 Nodulin-like: Nodulin-like; InterPro: IPR010658 Th 97.97
PF13347428 MFS_2: MFS/sugar transport protein 97.94
COG0738 422 FucP Fucose permease [Carbohydrate transport and m 97.86
PF03209 403 PUCC: PUCC protein; InterPro: IPR004896 This prote 97.83
COG0477338 ProP Permeases of the major facilitator superfamil 97.82
TIGR00926 654 2A1704 Peptide:H+ symporter (also transports b-lac 97.78
TIGR00788 468 fbt folate/biopterin transporter. The only functio 97.74
PRK11462 460 putative transporter; Provisional 97.7
TIGR00926654 2A1704 Peptide:H+ symporter (also transports b-lac 97.69
KOG0253528 consensus Synaptic vesicle transporter SV2 (major 97.62
PF05631 354 DUF791: Protein of unknown function (DUF791); Inte 97.6
PF05978156 UNC-93: Ion channel regulatory protein UNC-93; Int 97.56
KOG3762618 consensus Predicted transporter [General function 97.55
TIGR00769472 AAA ADP/ATP carrier protein family. These proteins 97.49
COG2211 467 MelB Na+/melibiose symporter and related transport 97.49
TIGR00939437 2a57 Equilibrative Nucleoside Transporter (ENT). 97.44
KOG2816 463 consensus Predicted transporter ADD1 (major facili 97.43
KOG2325 488 consensus Predicted transporter/transmembrane prot 97.35
PF0677985 DUF1228: Protein of unknown function (DUF1228); In 97.33
PF05978156 UNC-93: Ion channel regulatory protein UNC-93; Int 97.28
KOG3810433 consensus Micronutrient transporters (folate trans 97.24
PF06963432 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi 97.0
KOG3762618 consensus Predicted transporter [General function 96.88
PF1283277 MFS_1_like: MFS_1 like family 96.83
KOG3574510 consensus Acetyl-CoA transporter [Inorganic ion tr 96.83
COG0477 338 ProP Permeases of the major facilitator superfamil 96.72
KOG2563 480 consensus Permease of the major facilitator superf 96.64
PF03092 433 BT1: BT1 family; InterPro: IPR004324 Members of th 96.54
KOG0637498 consensus Sucrose transporter and related proteins 96.51
PF1283277 MFS_1_like: MFS_1 like family 96.43
PF13000544 Acatn: Acetyl-coenzyme A transporter 1; InterPro: 95.6
KOG1479406 consensus Nucleoside transporter [Nucleotide trans 95.43
PF00854 372 PTR2: POT family; InterPro: IPR000109 This entry r 95.26
PF03137 539 OATP: Organic Anion Transporter Polypeptide (OATP) 95.15
KOG1237571 consensus H+/oligopeptide symporter [Amino acid tr 95.03
PF03219491 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 94.78
PRK03612 521 spermidine synthase; Provisional 94.31
TIGR00769 472 AAA ADP/ATP carrier protein family. These proteins 94.3
PF01770 412 Folate_carrier: Reduced folate carrier; InterPro: 94.27
KOG3626 735 consensus Organic anion transporter [Secondary met 93.76
PF00854372 PTR2: POT family; InterPro: IPR000109 This entry r 93.67
PRK03612521 spermidine synthase; Provisional 93.53
KOG3098 461 consensus Uncharacterized conserved protein [Funct 92.32
PF01733309 Nucleoside_tran: Nucleoside transporter; InterPro: 90.39
PF0677985 DUF1228: Protein of unknown function (DUF1228); In 89.96
KOG3574 510 consensus Acetyl-CoA transporter [Inorganic ion tr 89.12
PF06963432 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi 87.85
KOG1237 571 consensus H+/oligopeptide symporter [Amino acid tr 83.1
KOG0637 498 consensus Sucrose transporter and related proteins 80.01
>PTZ00207 hypothetical protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.3e-45  Score=393.27  Aligned_cols=505  Identities=20%  Similarity=0.241  Sum_probs=391.1

Q ss_pred             ccCcHHHHHHHHHHHHhhhccchhhcchHHHHhhhCCCHHHHHHHHHHHHhhhhccccchhccccCCChHHHHHHHHHHH
Q 008210            8 SRPPWVGLGAAVWVQIAAGNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGENVGLLPGLASNKFPPWLVLFIGSLACF   87 (574)
Q Consensus         8 ~~~~w~~~~~~~l~~~~~g~~~~~~~~~~~l~~~l~~s~~~~~~i~~~~~~~~~~~~~~G~l~dr~G~r~~~~~g~~~~~   87 (574)
                      ..+||..+.++++++.+.|..|.++++.+++++++|+|++|++++..........+++.|+++||+|+|+++.++.++++
T Consensus        23 e~~Rw~~lva~~~~~~~~g~~y~fsv~s~~L~~~lgls~~~l~~i~svg~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~  102 (591)
T PTZ00207         23 EPRRFALLVLGAFCSICTSFMYAFNLISGAMQARYNLTQRDLSTITTVGIAVGYFLLPYSFIYDYLGPRPIFVLSMTVFC  102 (591)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999765544444558789999999999999999999999


Q ss_pred             HHHHHHHHHHhhccCChhHHHHHHHHHHHHhhhHhhhhHHHHHHHhhCCCCcchHHHHHHhhhhhHHHHHHHHHHHhccC
Q 008210           88 FGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLHN  167 (574)
Q Consensus        88 ~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~fp~~rg~a~gi~~~~~~~g~~i~~~i~~~l~~~  167 (574)
                      +|+++++++..+... ++++.++++|++.|+|.+..++++..++.+|||++||++.|+..++.++|+++.+++...++..
T Consensus       103 iG~ll~ala~~~~i~-~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~  181 (591)
T PTZ00207        103 LGTLLFALTFQEVIE-GSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPSNRGAVVAIMKTFTGLGSAILGSIQLAFFSD  181 (591)
T ss_pred             HHHHHHHHHhccccc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999988776554433 3689999999999999999999999999999999999999999999999999988888877766


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHhcccCCCCCC--C----CCC---------------CCc--chhhHHHHHHHHHHHHHH
Q 008210          168 SSSKLLLVLAVGVPAVCLVMMYFVRPCTPASG--E----DSA---------------APS--HFLFTQAASVVLGFFLLT  224 (574)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~---------------~~~--~~~~~~~~~~~~~~~~~~  224 (574)
                      +.+.+++++++++.+++++...+++.+|.+..  +    +++               +..  ++.+.....+.+++|+.+
T Consensus       182 ~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~  261 (591)
T PTZ00207        182 NTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPL  261 (591)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHH
Confidence            66677888888888888888888887763321  0    011               111  233334455777888888


Q ss_pred             HhhhcccCCCchhhhhhHHHHHH-HHHhhh-hcccccchhcccCCcccccccCCCCCCcccccCCCCCCCCCCCCCCCCC
Q 008210          225 TTILDHMIPLSASISYASLFIMI-ILLMAP-LAIPVKMTICRKRTSESGILDQSVGSSDSVVRAGGDADKSEPLLDPSSS  302 (574)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (574)
                      ..+..++++.++..+..+.++.+ +.+..| +.+|.+. +..++++++ .+   .++.++         . ++    +  
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~-~~~~~~~~~-~~---~~~~~~---------~-~~----~--  320 (591)
T PTZ00207        262 QGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTT-FDGKRPHDD-SD---GKAKEH---------V-EA----G--  320 (591)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHH-hccCCcCCC-cc---cccccc---------c-cc----c--
Confidence            88888888887888777777665 666677 6677653 221111100 00   000000         0 00    0  


Q ss_pred             CCCCCCCCCCCCchHHHHHHhhhccchhhhccCCCCCCCccHHHhhhchhHHHHHHHHHhhcccceeeeccHHHHHHhh-
Q 008210          303 TTDLGSFRDNDDVSEVALLLAEGEGAVRRKKRRPKRGEDFKFTEAVVKADFWLLFLVYFAGVGSGVTVLNNLAQIGIAQ-  381 (574)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  381 (574)
                             .  +.. +.+...  .+.+.  +.+.|  +...++++.+++.+||.+++.++|..+.++.+++|+.++.+++ 
T Consensus       321 -------~--~~~-~~~~~~--~~~~~--~~~~P--~~~~t~~q~l~~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~  384 (591)
T PTZ00207        321 -------E--EVS-AAEDKV--VETDV--DYIAP--QFQETFIEGLKTARLWCLLWSIFCCVGAHFVIIFNARFIYTALA  384 (591)
T ss_pred             -------c--ccc-cccccc--ccccc--cCCCC--CCcchHHHHHhchhHHHHHHHHHHhhCchheeeecHHHHHHHhc
Confidence                   0  000 000000  00000  10112  2233899999999999999999999999999999999999998 


Q ss_pred             CC-chh--h-HHHHHHHHHHhhhhhhhhhhhhhhhcc----ccCchhhHHHHHHHHHHHHHHHHhcCc-hHHHHHHHHHh
Q 008210          382 GV-HDT--T-ILLSLFSFCNFVGRLGGGVVSEHFVRK----TIPRTIWMTCTQVIMIITYLLFASSID-GTLYAATALLG  452 (574)
Q Consensus       382 g~-~~~--~-~~~~~~~i~~~ig~~~~G~l~Dr~g~r----~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~l~g  452 (574)
                      |. .+.  . .+++++++++.+||+.+|.++....+|    |++|+..+.+..+ +.++.+++....+ ..+++..++.|
T Consensus       385 g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~~~L~~~~~lvg  463 (591)
T PTZ00207        385 GEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPKAALPLPYFIAA  463 (591)
T ss_pred             CCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCccHhHHHHHHHH
Confidence            87 333  2 378999999999999999999544444    3788888887777 7777777665555 68999999999


Q ss_pred             hhccchhhhHHHHHHhhcCccchhhhhhhhhhhhhhHHHHHhHhHHHhhhhhhhhhhcccccccCCcccccCCccchhHH
Q 008210          453 ICYGVQFSIMIPTVSELFGLEHFGLISNFLALGNPLAAFLFSGLLAGYIYDNEAAKQQGFNLLTSNVVSCLGPNCFRITF  532 (574)
Q Consensus       453 ~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~~gp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  532 (574)
                      +++|..++..+.+++|+|+ |+.|+.+.+..++..+|+.++.-.++|.+||++++++        ++..|.|..||+.+|
T Consensus       464 ~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~--------~~~~C~G~~C~~~~~  534 (591)
T PTZ00207        464 FANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKL--------GQDVCTERVCVVMPL  534 (591)
T ss_pred             HHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhC--------CCCeeCCceeeHhHH
Confidence            9999999999999999999 9999999999999999999888889999999987653        356899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 008210          533 FVLAGVCCVGSILSIILNIRIRPVYQML  560 (574)
Q Consensus       533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  560 (574)
                      .+++++++++++++..+..|+|+.+++.
T Consensus       535 ~v~~~~~~~g~~~s~~l~~R~r~~y~~~  562 (591)
T PTZ00207        535 AFLLGLSFLAFITSTYVHLQYRRLCLKA  562 (591)
T ss_pred             HHHHHHHHHHHHHHhheeeehHHHHHHH
Confidence            9999999999999999998988877643

>TIGR00890 2A0111 Oxalate/Formate Antiporter Back     alignment and domain information
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK09705 cynX putative cyanate transporter; Provisional Back     alignment and domain information
>PRK09556 uhpT sugar phosphate antiporter; Reviewed Back     alignment and domain information
>TIGR00892 2A0113 monocarboxylate transporter 1 Back     alignment and domain information
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional Back     alignment and domain information
>PRK11663 regulatory protein UhpC; Provisional Back     alignment and domain information
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2 Back     alignment and domain information
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional Back     alignment and domain information
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR02332 HpaX 4-hydroxyphenylacetate permease Back     alignment and domain information
>PRK14995 methyl viologen resistance protein SmvA; Provisional Back     alignment and domain information
>PRK03545 putative arabinose transporter; Provisional Back     alignment and domain information
>PRK12307 putative sialic acid transporter; Provisional Back     alignment and domain information
>TIGR00903 2A0129 major facilitator 4 family protein Back     alignment and domain information
>PRK15034 nitrate/nitrite transport protein NarU; Provisional Back     alignment and domain information
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00893 2A0114 d-galactonate transporter Back     alignment and domain information
>TIGR00891 2A0112 putative sialic acid transporter Back     alignment and domain information
>PRK03699 putative transporter; Provisional Back     alignment and domain information
>PRK05122 major facilitator superfamily transporter; Provisional Back     alignment and domain information
>PRK10642 proline/glycine betaine transporter; Provisional Back     alignment and domain information
>PLN00028 nitrate transmembrane transporter; Provisional Back     alignment and domain information
>TIGR00879 SP MFS transporter, sugar porter (SP) family Back     alignment and domain information
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter Back     alignment and domain information
>PRK10406 alpha-ketoglutarate transporter; Provisional Back     alignment and domain information
>PRK12382 putative transporter; Provisional Back     alignment and domain information
>PRK10504 putative transporter; Provisional Back     alignment and domain information
>TIGR00712 glpT glycerol-3-phosphate transporter Back     alignment and domain information
>PRK10077 xylE D-xylose transporter XylE; Provisional Back     alignment and domain information
>PRK10213 nepI ribonucleoside transporter; Reviewed Back     alignment and domain information
>TIGR00887 2A0109 phosphate:H+ symporter Back     alignment and domain information
>PRK03893 putative sialic acid transporter; Provisional Back     alignment and domain information
>PRK09952 shikimate transporter; Provisional Back     alignment and domain information
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily Back     alignment and domain information
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins Back     alignment and domain information
>TIGR00898 2A0119 cation transport protein Back     alignment and domain information
>PRK10091 MFS transport protein AraJ; Provisional Back     alignment and domain information
>PRK03633 putative MFS family transporter protein; Provisional Back     alignment and domain information
>PRK15402 multidrug efflux system translocase MdfA; Provisional Back     alignment and domain information
>TIGR00897 2A0118 polyol permease family Back     alignment and domain information
>PRK15075 citrate-proton symporter; Provisional Back     alignment and domain information
>TIGR00895 2A0115 benzoate transport Back     alignment and domain information
>TIGR00881 2A0104 phosphoglycerate transporter family protein Back     alignment and domain information
>TIGR00900 2A0121 H+ Antiporter protein Back     alignment and domain information
>PRK09874 drug efflux system protein MdtG; Provisional Back     alignment and domain information
>PRK10489 enterobactin exporter EntS; Provisional Back     alignment and domain information
>PRK11646 multidrug resistance protein MdtH; Provisional Back     alignment and domain information
>TIGR00896 CynX cyanate transporter Back     alignment and domain information
>TIGR00885 fucP L-fucose:H+ symporter permease Back     alignment and domain information
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily Back     alignment and domain information
>PRK10133 L-fucose transporter; Provisional Back     alignment and domain information
>PRK11043 putative transporter; Provisional Back     alignment and domain information
>TIGR00899 2A0120 sugar efflux transporter Back     alignment and domain information
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters Back     alignment and domain information
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK10054 putative transporter; Provisional Back     alignment and domain information
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms Back     alignment and domain information
>PRK15403 multidrug efflux system protein MdtM; Provisional Back     alignment and domain information
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK10473 multidrug efflux system protein MdtL; Provisional Back     alignment and domain information
>PRK11195 lysophospholipid transporter LplT; Provisional Back     alignment and domain information
>PRK11102 bicyclomycin/multidrug efflux system; Provisional Back     alignment and domain information
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) Back     alignment and domain information
>PRK09528 lacY galactoside permease; Reviewed Back     alignment and domain information
>TIGR00889 2A0110 nucleoside transporter Back     alignment and domain information
>PRK11652 emrD multidrug resistance protein D; Provisional Back     alignment and domain information
>TIGR00883 2A0106 metabolite-proton symporter Back     alignment and domain information
>PRK11010 ampG muropeptide transporter; Validated Back     alignment and domain information
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins Back     alignment and domain information
>TIGR00902 2A0127 phenyl proprionate permease family protein Back     alignment and domain information
>PRK15011 sugar efflux transporter B; Provisional Back     alignment and domain information
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK10207 dipeptide/tripeptide permease B; Provisional Back     alignment and domain information
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated Back     alignment and domain information
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional Back     alignment and domain information
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional Back     alignment and domain information
>TIGR00882 2A0105 oligosaccharide:H+ symporter Back     alignment and domain information
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>PRK11902 ampG muropeptide transporter; Reviewed Back     alignment and domain information
>TIGR00901 2A0125 AmpG-related permease Back     alignment and domain information
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter Back     alignment and domain information
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial Back     alignment and domain information
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK09584 tppB putative tripeptide transporter permease; Reviewed Back     alignment and domain information
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family Back     alignment and domain information
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily Back     alignment and domain information
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters Back     alignment and domain information
>TIGR00806 rfc RFC reduced folate carrier Back     alignment and domain information
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>PRK15462 dipeptide/tripeptide permease D; Provisional Back     alignment and domain information
>TIGR00805 oat sodium-independent organic anion transporter Back     alignment and domain information
>PRK09669 putative symporter YagG; Provisional Back     alignment and domain information
>PRK09848 glucuronide transporter; Provisional Back     alignment and domain information
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter Back     alignment and domain information
>TIGR01272 gluP glucose/galactose transporter Back     alignment and domain information
>PF03825 Nuc_H_symport: Nucleoside H+ symporter Back     alignment and domain information
>PRK10429 melibiose:sodium symporter; Provisional Back     alignment and domain information
>TIGR00788 fbt folate/biopterin transporter Back     alignment and domain information
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] Back     alignment and domain information
>PF13347 MFS_2: MFS/sugar transport protein Back     alignment and domain information
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions Back     alignment and domain information
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>PRK11462 putative transporter; Provisional Back     alignment and domain information
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon Back     alignment and domain information
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] Back     alignment and domain information
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG2270 Permeases of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>PRK11663 regulatory protein UhpC; Provisional Back     alignment and domain information
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK10504 putative transporter; Provisional Back     alignment and domain information
>PRK10054 putative transporter; Provisional Back     alignment and domain information
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms Back     alignment and domain information
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily Back     alignment and domain information
>PRK10091 MFS transport protein AraJ; Provisional Back     alignment and domain information
>PRK10213 nepI ribonucleoside transporter; Reviewed Back     alignment and domain information
>PRK03545 putative arabinose transporter; Provisional Back     alignment and domain information
>TIGR02332 HpaX 4-hydroxyphenylacetate permease Back     alignment and domain information
>TIGR00712 glpT glycerol-3-phosphate transporter Back     alignment and domain information
>TIGR00900 2A0121 H+ Antiporter protein Back     alignment and domain information
>PRK14995 methyl viologen resistance protein SmvA; Provisional Back     alignment and domain information
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial Back     alignment and domain information
>TIGR00893 2A0114 d-galactonate transporter Back     alignment and domain information
>PRK03699 putative transporter; Provisional Back     alignment and domain information
>PRK09584 tppB putative tripeptide transporter permease; Reviewed Back     alignment and domain information
>TIGR00881 2A0104 phosphoglycerate transporter family protein Back     alignment and domain information
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2 Back     alignment and domain information
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily Back     alignment and domain information
>TIGR00891 2A0112 putative sialic acid transporter Back     alignment and domain information
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional Back     alignment and domain information
>PRK09874 drug efflux system protein MdtG; Provisional Back     alignment and domain information
>PRK10473 multidrug efflux system protein MdtL; Provisional Back     alignment and domain information
>PRK15403 multidrug efflux system protein MdtM; Provisional Back     alignment and domain information
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00903 2A0129 major facilitator 4 family protein Back     alignment and domain information
>PRK15462 dipeptide/tripeptide permease D; Provisional Back     alignment and domain information
>PRK11646 multidrug resistance protein MdtH; Provisional Back     alignment and domain information
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] Back     alignment and domain information
>PRK11195 lysophospholipid transporter LplT; Provisional Back     alignment and domain information
>TIGR00895 2A0115 benzoate transport Back     alignment and domain information
>PLN00028 nitrate transmembrane transporter; Provisional Back     alignment and domain information
>PRK11102 bicyclomycin/multidrug efflux system; Provisional Back     alignment and domain information
>PRK12307 putative sialic acid transporter; Provisional Back     alignment and domain information
>PRK15402 multidrug efflux system translocase MdfA; Provisional Back     alignment and domain information
>PRK10207 dipeptide/tripeptide permease B; Provisional Back     alignment and domain information
>PRK11652 emrD multidrug resistance protein D; Provisional Back     alignment and domain information
>PRK10489 enterobactin exporter EntS; Provisional Back     alignment and domain information
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) Back     alignment and domain information
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional Back     alignment and domain information
>TIGR00890 2A0111 Oxalate/Formate Antiporter Back     alignment and domain information
>PRK10642 proline/glycine betaine transporter; Provisional Back     alignment and domain information
>PRK15011 sugar efflux transporter B; Provisional Back     alignment and domain information
>PRK09556 uhpT sugar phosphate antiporter; Reviewed Back     alignment and domain information
>TIGR00897 2A0118 polyol permease family Back     alignment and domain information
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters Back     alignment and domain information
>TIGR00892 2A0113 monocarboxylate transporter 1 Back     alignment and domain information
>PRK09705 cynX putative cyanate transporter; Provisional Back     alignment and domain information
>TIGR00880 2_A_01_02 Multidrug resistance protein Back     alignment and domain information
>PRK03893 putative sialic acid transporter; Provisional Back     alignment and domain information
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins Back     alignment and domain information
>PRK09528 lacY galactoside permease; Reviewed Back     alignment and domain information
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>PRK15034 nitrate/nitrite transport protein NarU; Provisional Back     alignment and domain information
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) Back     alignment and domain information
>PRK11043 putative transporter; Provisional Back     alignment and domain information
>PRK03633 putative MFS family transporter protein; Provisional Back     alignment and domain information
>TIGR00899 2A0120 sugar efflux transporter Back     alignment and domain information
>PRK05122 major facilitator superfamily transporter; Provisional Back     alignment and domain information
>TIGR00882 2A0105 oligosaccharide:H+ symporter Back     alignment and domain information
>TIGR00880 2_A_01_02 Multidrug resistance protein Back     alignment and domain information
>PRK12382 putative transporter; Provisional Back     alignment and domain information
>TIGR00879 SP MFS transporter, sugar porter (SP) family Back     alignment and domain information
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins Back     alignment and domain information
>TIGR00889 2A0110 nucleoside transporter Back     alignment and domain information
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter Back     alignment and domain information
>PRK10077 xylE D-xylose transporter XylE; Provisional Back     alignment and domain information
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00896 CynX cyanate transporter Back     alignment and domain information
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>PRK10406 alpha-ketoglutarate transporter; Provisional Back     alignment and domain information
>TIGR00806 rfc RFC reduced folate carrier Back     alignment and domain information
>TIGR00902 2A0127 phenyl proprionate permease family protein Back     alignment and domain information
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) Back     alignment and domain information
>TIGR00885 fucP L-fucose:H+ symporter permease Back     alignment and domain information
>PTZ00207 hypothetical protein; Provisional Back     alignment and domain information
>PRK09952 shikimate transporter; Provisional Back     alignment and domain information
>PRK15075 citrate-proton symporter; Provisional Back     alignment and domain information
>TIGR00883 2A0106 metabolite-proton symporter Back     alignment and domain information
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00887 2A0109 phosphate:H+ symporter Back     alignment and domain information
>PRK11010 ampG muropeptide transporter; Validated Back     alignment and domain information
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily Back     alignment and domain information
>TIGR00898 2A0119 cation transport protein Back     alignment and domain information
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional Back     alignment and domain information
>PRK10133 L-fucose transporter; Provisional Back     alignment and domain information
>PRK11902 ampG muropeptide transporter; Reviewed Back     alignment and domain information
>TIGR00805 oat sodium-independent organic anion transporter Back     alignment and domain information
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated Back     alignment and domain information
>TIGR00901 2A0125 AmpG-related permease Back     alignment and domain information
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] Back     alignment and domain information
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter Back     alignment and domain information
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional Back     alignment and domain information
>KOG3098 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family Back     alignment and domain information
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions Back     alignment and domain information
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG2270 Permeases of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR01272 gluP glucose/galactose transporter Back     alignment and domain information
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] Back     alignment and domain information
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter Back     alignment and domain information
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF03825 Nuc_H_symport: Nucleoside H+ symporter Back     alignment and domain information
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age Back     alignment and domain information
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK09848 glucuronide transporter; Provisional Back     alignment and domain information
>PRK10429 melibiose:sodium symporter; Provisional Back     alignment and domain information
>PRK09669 putative symporter YagG; Provisional Back     alignment and domain information
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters Back     alignment and domain information
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins Back     alignment and domain information
>PF13347 MFS_2: MFS/sugar transport protein Back     alignment and domain information
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon Back     alignment and domain information
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] Back     alignment and domain information
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) Back     alignment and domain information
>TIGR00788 fbt folate/biopterin transporter Back     alignment and domain information
>PRK11462 putative transporter; Provisional Back     alignment and domain information
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) Back     alignment and domain information
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans Back     alignment and domain information
>KOG3762 consensus Predicted transporter [General function prediction only] Back     alignment and domain information
>TIGR00769 AAA ADP/ATP carrier protein family Back     alignment and domain information
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) Back     alignment and domain information
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] Back     alignment and domain information
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters Back     alignment and domain information
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans Back     alignment and domain information
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] Back     alignment and domain information
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 Back     alignment and domain information
>KOG3762 consensus Predicted transporter [General function prediction only] Back     alignment and domain information
>PF12832 MFS_1_like: MFS_1 like family Back     alignment and domain information
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] Back     alignment and domain information
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins Back     alignment and domain information
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF12832 MFS_1_like: MFS_1 like family Back     alignment and domain information
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] Back     alignment and domain information
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] Back     alignment and domain information
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters Back     alignment and domain information
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) Back     alignment and domain information
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] Back     alignment and domain information
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions Back     alignment and domain information
>PRK03612 spermidine synthase; Provisional Back     alignment and domain information
>TIGR00769 AAA ADP/ATP carrier protein family Back     alignment and domain information
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) Back     alignment and domain information
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters Back     alignment and domain information
>PRK03612 spermidine synthase; Provisional Back     alignment and domain information
>KOG3098 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs Back     alignment and domain information
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters Back     alignment and domain information
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 Back     alignment and domain information
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] Back     alignment and domain information
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query574
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-06
1pw4_A451 Glycerol-3-phosphate transporter; transmembrane, i 4e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 49.5 bits (117), Expect = 2e-06
 Identities = 58/429 (13%), Positives = 111/429 (25%), Gaps = 148/429 (34%)

Query: 222 LLTTTILDHMIPLSASISYASLFIMIILLMAPLAIPVKMTICRKRTSESGILDQSVGSSD 281
           +L+   +DH+I    ++S  +L +   L               K+     ++ + V    
Sbjct: 45  ILSKEEIDHIIMSKDAVS-GTLRLFWTL-------------LSKQEE---MVQKFVEEVL 87

Query: 282 SVVRAGGDAD--------KSEPLLDPSSSTTDLGSFRDN--DDVSEVALLLAEGEGAVRR 331
                    +        K+E    PS  T      RD   +D    A            
Sbjct: 88  -------RINYKFLMSPIKTEQ-RQPSMMTRMYIEQRDRLYNDNQVFA------------ 127

Query: 332 KKRRPKRGEDF-KFTEAVVKADFWLLFLVYFAGV-GSGVTVLNNLA------QIGIAQGV 383
            K    R + + K  +A+++       L+   GV GSG T +          Q  +   +
Sbjct: 128 -KYNVSRLQPYLKLRQALLELRPAKNVLID--GVLGSGKTWVALDVCLSYKVQCKMDFKI 184

Query: 384 H---------DTTILLSLFSFC-----NFVGRLGGGV------------VSEHFVRKTIP 417
                       T+L  L         N+  R                 +      K   
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244

Query: 418 RT------IW---------MTCTQVIMIITYLLFASSIDGTLYAATALLGICYGVQFSIM 462
                   +          ++C   I++ T   F    D        L            
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCK--ILLTTR--FKQVTD-------FLSAATTTH----- 288

Query: 463 IPTVSELFGLEHF---GLISNFLAL-----------GNPLAAFLFSGLLAGYIYDNEAAK 508
           I        L       L+  +L              NP    + +  +   +   +  K
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK 348

Query: 509 QQGFNLLTSNV---VSCLGPNCFRITFFVLAGVCCVGSILSIIL--NIRIRP--VYQMLY 561
               + LT+ +   ++ L P  +R  F  L+           +   +  I P  +  +++
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLS-----------VFPPSAHI-PTILLSLIW 396

Query: 562 AGGSFRLPQ 570
                    
Sbjct: 397 FDVIKSDVM 405
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query574
1pw4_A451 Glycerol-3-phosphate transporter; transmembrane, i 100.0
3o7q_A438 L-fucose-proton symporter; transporter, multi-PASS 99.98
4gc0_A491 D-xylose-proton symporter; MFS, transport protein; 99.96
4aps_A491 DI-OR tripeptide H+ symporter; transport protein, 99.95
2gfp_A375 EMRD, multidrug resistance protein D; membrane pro 99.94
2cfq_A417 Lactose permease; transport, transport mechanism, 99.91
2xut_A524 Proton/peptide symporter family protein; transport 99.9
1pw4_A 451 Glycerol-3-phosphate transporter; transmembrane, i 99.36
4aps_A 491 DI-OR tripeptide H+ symporter; transport protein, 99.32
3o7q_A 438 L-fucose-proton symporter; transporter, multi-PASS 99.3
2xut_A 524 Proton/peptide symporter family protein; transport 99.19
2gfp_A 375 EMRD, multidrug resistance protein D; membrane pro 99.19
4gc0_A 491 D-xylose-proton symporter; MFS, transport protein; 98.77
2cfq_A417 Lactose permease; transport, transport mechanism, 98.66
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Back     alignment and structure
Probab=100.00  E-value=1.1e-31  Score=283.61  Aligned_cols=398  Identities=12%  Similarity=0.072  Sum_probs=280.5

Q ss_pred             cCcHHHHHHHHHHHHhhhc-cchhhcchHHHHhhhCCCHHHHHHHHHHHHhhhhc-cccchhccccCCChHHHHHHHHHH
Q 008210            9 RPPWVGLGAAVWVQIAAGN-AYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGENV-GLLPGLASNKFPPWLVLFIGSLAC   86 (574)
Q Consensus         9 ~~~w~~~~~~~l~~~~~g~-~~~~~~~~~~l~~~l~~s~~~~~~i~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~~~   86 (574)
                      +++|..+....+..+..+. .+.++.+.|.+.+++ .+..+.+++.+...++..+ +++.|+++||+|||+++.++.++.
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~  102 (451)
T 1pw4_A           24 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA  102 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHH
Confidence            3456666666655555544 667788889999999 9999999987777777765 999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccCChhHHHHHHHHHHHHhhhHhhhhHHHHHHHhhCC-CCcchHHHHHHhhhhhHHHHHHHHHHHhc
Q 008210           87 FFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEIYNMLL  165 (574)
Q Consensus        87 ~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~fp-~~rg~a~gi~~~~~~~g~~i~~~i~~~l~  165 (574)
                      .++++++.+.... .  ++++.+++.|++.|++.+..+++...++.+++| ++|++++++...+.++|.++++.+...+.
T Consensus       103 ~~~~~~~~~~~~~-~--~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  179 (451)
T 1pw4_A          103 AAVMLFMGFVPWA-T--SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM  179 (451)
T ss_dssp             HHHHHHHHHCHHH-H--SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred             HHHHHHHHhhhhc-c--ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9997775441000 1  357889999999999999999999999999998 68999999999999999999988887765


Q ss_pred             cCCh-hHHHHHHHHHHHHHHHHH-HHhcccCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhcccCCCchhhhhhHH
Q 008210          166 HNSS-SKLLLVLAVGVPAVCLVM-MYFVRPCTPASGEDSAAPSHFLFTQAASVVLGFFLLTTTILDHMIPLSASISYASL  243 (574)
Q Consensus       166 ~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (574)
                      ...+ |++.+.+..++.++..+. .+.+++.+++...                                           
T Consensus       180 ~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------  216 (451)
T 1pw4_A          180 AWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGL-------------------------------------------  216 (451)
T ss_dssp             HHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCC-------------------------------------------
T ss_pred             HHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCC-------------------------------------------
Confidence            4333 555544444333332222 2222211110000                                           


Q ss_pred             HHHHHHHhhhhcccccchhcccCCcccccccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHh
Q 008210          244 FIMIILLMAPLAIPVKMTICRKRTSESGILDQSVGSSDSVVRAGGDADKSEPLLDPSSSTTDLGSFRDNDDVSEVALLLA  323 (574)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (574)
                                             ++++                     +.+.                 +.+.+      
T Consensus       217 -----------------------~~~~---------------------~~~~-----------------~~~~~------  229 (451)
T 1pw4_A          217 -----------------------PPIE---------------------EYKN-----------------DYPDD------  229 (451)
T ss_dssp             -----------------------CSCT---------------------TTCC-----------------C----------
T ss_pred             -----------------------CChh---------------------hhcc-----------------ccccc------
Confidence                                   0000                     0000                 00000      


Q ss_pred             hhccchhhhccCCCCCCCccHHHhhhchhHHHHHHHHHhhcccceeeeccHHHHHHh-hCCc--hhhHHHHHHHHHHhhh
Q 008210          324 EGEGAVRRKKRRPKRGEDFKFTEAVVKADFWLLFLVYFAGVGSGVTVLNNLAQIGIA-QGVH--DTTILLSLFSFCNFVG  400 (574)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~--~~~~~~~~~~i~~~ig  400 (574)
                       .+.+.  ++  +...++...++.+|+|.+|...+..++.......+..+.|.+.++ .|.+  +.+...+...++..++
T Consensus       230 -~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  304 (451)
T 1pw4_A          230 -YNEKA--EQ--ELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPG  304 (451)
T ss_dssp             --------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             -chhhh--hc--ccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence             00000  00  001111124677889999988888777766666667788888877 6775  4567888899999999


Q ss_pred             hhhhhhhhhhh--hccccCchhhHHHHHHHHH-HHHHHHHhc---CchHHHHHHHHHhhhccchhhhHHHHHHhhcCccc
Q 008210          401 RLGGGVVSEHF--VRKTIPRTIWMTCTQVIMI-ITYLLFASS---IDGTLYAATALLGICYGVQFSIMIPTVSELFGLEH  474 (574)
Q Consensus       401 ~~~~G~l~Dr~--g~r~~~~~~~~~~~~~~~~-i~~~~~~~~---~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~  474 (574)
                      +++.|++.||+  +||     ..+..+..+.. ++++++...   +.....+...+.|++.+...+....++.|.+|+++
T Consensus       305 ~~~~g~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  379 (451)
T 1pw4_A          305 TLLCGWMSDKVFRGNR-----GATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA  379 (451)
T ss_dssp             HHHHHHHHHHTSTTCH-----HHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH
T ss_pred             HHHHHHHHHHHhcCCc-----hhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh
Confidence            99999999999  887     44444444444 555555433   22345566777888888888888899999999999


Q ss_pred             hhhhhhhhhhhhhh-HHHHHhHhHHHhhhhhhhhhhcccccccCCcccccCCccchhHHHHHHHHHHHHHHHHHHHhhh
Q 008210          475 FGLISNFLALGNPL-AAFLFSGLLAGYIYDNEAAKQQGFNLLTSNVVSCLGPNCFRITFFVLAGVCCVGSILSIILNIR  552 (574)
Q Consensus       475 ~g~~~g~~~~~~~l-g~~~~gp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (574)
                      +|+++|+.++...+ +.. ++|.+.|.+.|..                     +|+..|++.+++.+++.++.+...++
T Consensus       380 ~g~~~~~~~~~~~~~g~~-~~~~~~g~l~~~~---------------------g~~~~~~~~~~~~~~~~~~~~~~~~~  436 (451)
T 1pw4_A          380 AGTAAGFTGLFGYLGGSV-AASAIVGYTVDFF---------------------GWDGGFMVMIGGSILAVILLIVVMIG  436 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHSS---------------------CSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHH-HHHHHHHHHHHhc---------------------CcHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999 988 8999999999983                     58889998888888877666554443
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Back     alignment and structure
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* Back     alignment and structure
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Back     alignment and structure
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Back     alignment and structure
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Back     alignment and structure
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Back     alignment and structure
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Back     alignment and structure
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Back     alignment and structure
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Back     alignment and structure
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Back     alignment and structure
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Back     alignment and structure
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* Back     alignment and structure
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query574
d1pw4a_447 Glycerol-3-phosphate transporter {Escherichia coli 100.0
d1pv7a_417 Lactose permease {Escherichia coli [TaxId: 562]} 99.92
d1pw4a_ 447 Glycerol-3-phosphate transporter {Escherichia coli 99.33
d1pv7a_ 417 Lactose permease {Escherichia coli [TaxId: 562]} 98.95
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.3e-32  Score=284.16  Aligned_cols=409  Identities=13%  Similarity=0.092  Sum_probs=272.4

Q ss_pred             ccCcHHHHHHHHHHHHhhhc-cchhhcchHHHHhhhCCCHHHHHHHHHHHHhhhhc-cccchhccccCCChHHHHHHHHH
Q 008210            8 SRPPWVGLGAAVWVQIAAGN-AYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGENV-GLLPGLASNKFPPWLVLFIGSLA   85 (574)
Q Consensus         8 ~~~~w~~~~~~~l~~~~~g~-~~~~~~~~~~l~~~l~~s~~~~~~i~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~~   85 (574)
                      ++++|..+..+++..+.... ...++...|.++ |+|+|.+|++++.+.+.++..+ +++.|+++||+|||+++.++.++
T Consensus        20 ~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~   98 (447)
T d1pw4a_          20 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL   98 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence            34678887776665544433 456777778775 5899999999987777777755 99999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccCChhHHHHHHHHHHHHhhhHhhhhHHHHHHHhhCC-CCcchHHHHHHhhhhhHHHHHHHHHHHh
Q 008210           86 CFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEIYNML  164 (574)
Q Consensus        86 ~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~fp-~~rg~a~gi~~~~~~~g~~i~~~i~~~l  164 (574)
                      ..++.+++....  ... .+++.+++.|++.|++.|..+++...++.+++| ++|++++++...+..+|..+++.+...+
T Consensus        99 ~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~  175 (447)
T d1pw4a_          99 AAAVMLFMGFVP--WAT-SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG  175 (447)
T ss_dssp             HHHHHHHHHHCH--HHH-SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred             HHHHHhhccccc--hhh-hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhH
Confidence            998876644331  111 246788999999999999999999999999998 5799999999999999998888776654


Q ss_pred             cc-CChhHHHHHHHHHHHHHH-HHHHHhcccCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhcccCCCchhhhhhH
Q 008210          165 LH-NSSSKLLLVLAVGVPAVC-LVMMYFVRPCTPASGEDSAAPSHFLFTQAASVVLGFFLLTTTILDHMIPLSASISYAS  242 (574)
Q Consensus       165 ~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (574)
                      .. ..+|++.+.+...+.++. ++...+.++.|++...                                          
T Consensus       176 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------  213 (447)
T d1pw4a_         176 MAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGL------------------------------------------  213 (447)
T ss_dssp             HHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCC------------------------------------------
T ss_pred             hhhhhcccccchhhhhhHHHHHHHHHHhcccchhhccc------------------------------------------
Confidence            33 234444443333222222 2222222221111000                                          


Q ss_pred             HHHHHHHHhhhhcccccchhcccCCcccccccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHH
Q 008210          243 LFIMIILLMAPLAIPVKMTICRKRTSESGILDQSVGSSDSVVRAGGDADKSEPLLDPSSSTTDLGSFRDNDDVSEVALLL  322 (574)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (574)
                                             .+.++ .                  +.+++                 ++.+      
T Consensus       214 -----------------------~~~~~-~------------------~~~~~-----------------~~~~------  228 (447)
T d1pw4a_         214 -----------------------PPIEE-Y------------------KNDYP-----------------DDYN------  228 (447)
T ss_dssp             -----------------------CSCTT-T------------------CCC-----------------------------
T ss_pred             -----------------------chhhh-h------------------hhhcc-----------------cchh------
Confidence                                   00000 0                  00000                 0000      


Q ss_pred             hhhccchhhhccCCCCCCCccHHHhhhchhHHHHHHHHHhhcccceeeeccHHHHHHh-hCCc--hhhHHHHHHHHHHhh
Q 008210          323 AEGEGAVRRKKRRPKRGEDFKFTEAVVKADFWLLFLVYFAGVGSGVTVLNNLAQIGIA-QGVH--DTTILLSLFSFCNFV  399 (574)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~--~~~~~~~~~~i~~~i  399 (574)
                          ++.  ++  +...++...++.++++.+|......++..........+.+.+.++ .+.+  +.+...+...+...+
T Consensus       229 ----~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (447)
T d1pw4a_         229 ----EKA--EQ--ELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIP  300 (447)
T ss_dssp             ---------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHH
T ss_pred             ----hcc--cc--ccchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhh
Confidence                000  00  111122344667888999988887777666556666677777765 4554  566788889999999


Q ss_pred             hhhhhhhhhhhhhccccCchhhHHHHHHHHHHHHHHHHhc---CchHHHHHHHHHhhhccchhhhHHHHHHhhcCccchh
Q 008210          400 GRLGGGVVSEHFVRKTIPRTIWMTCTQVIMIITYLLFASS---IDGTLYAATALLGICYGVQFSIMIPTVSELFGLEHFG  476 (574)
Q Consensus       400 g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g  476 (574)
                      +++++|++.||++|++..  ........+..++..+....   +....++...+.|++.+...+....+..|.+|++.+|
T Consensus       301 ~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g  378 (447)
T d1pw4a_         301 GTLLCGWMSDKVFRGNRG--ATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAG  378 (447)
T ss_dssp             HHHHHHHHHHHTSTTCHH--HHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHH
T ss_pred             hhhhhhhhhhhccccccc--cccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence            999999999999988321  12222222222222222221   2234556667778888888888889999999999999


Q ss_pred             hhhhhhhhhhhhHHHHHhHhHHHhhhhhhhhhhcccccccCCcccccCCccchhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 008210          477 LISNFLALGNPLAAFLFSGLLAGYIYDNEAAKQQGFNLLTSNVVSCLGPNCFRITFFVLAGVCCVGSILSIILNIRIRPV  556 (574)
Q Consensus       477 ~~~g~~~~~~~lg~~~~gp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  556 (574)
                      ++.|+.++...+++.+++|.+.|++.|..                     +|+..|++..++++++.++...+.++++++
T Consensus       379 ~~~g~~~~~~~~~g~~~~~~~~g~~~~~~---------------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r  437 (447)
T d1pw4a_         379 TAAGFTGLFGYLGGSVAASAIVGYTVDFF---------------------GWDGGFMVMIGGSILAVILLIVVMIGEKRR  437 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSS---------------------CSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------------ChHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            99999998888866547899999999984                     578888888887777777666555554443


Q ss_pred             HH
Q 008210          557 YQ  558 (574)
Q Consensus       557 ~~  558 (574)
                      ++
T Consensus       438 ~~  439 (447)
T d1pw4a_         438 HE  439 (447)
T ss_dssp             HH
T ss_pred             HH
Confidence            33
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Back     information, alignment and structure