Citrus Sinensis ID: 008222


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570---
MYLFVHFICFYSNIFGFETKVTSKFQCYVASCNSTLQYQSCFAISNEFMLQKIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGWLQHGSGSLASAEQQDSSSETSSPQNGPVVIEKVNCCSADPIAKSDSIIREEDLSSDSKLPANVEMTPVEMQDDNVEQDFEPVLDTDSLHPIKTSSWNIENSDAPKIPECYTKVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMWIGMAHDVLKQKNLEKPEEGGPAYSTVQNDDVHSERVVNTGETSERLCNADHRIRTLPITDSLDASQSVGNLLQGNLVDSAAIASLLRESMTKCCSFVKRQSGVSLILVIAFAVIFLMQVSILVLLNRPQHVHMASPPDYMGAGVGVGLGQRSAESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQLHKRE
ccccccEEEEEEcccccEEEEEccccccccccccccccccccccccccccEEEEEcccEEEEEEcccccccccEEEEEEcccEEEEEEccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccHHHHHHcccccccHHHHHHHHHHcccccEEEcccccccccccEEEEEEEEEEccccccccEEEEEEEEEEEEEcccEEEEEEEEEccccccccEEEEEEEEEEEcccccccEEEEEEEEEEEEEEcccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
ccccccEEEEEcHHccEEEEEEEEHHHEEEEcccccccccccccccccccEEEEEHHHEEEEEHHHHHEEcccEEEEEcccccHHHHcHccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccHHHHHHHHccccHHHHHHHHHHHcccccEEEcccccccccccEEEEEEEEEccccccccccEEEEEEEEEEcccccEEEEEEEEccccccccEEEEEEEEEEEEEccccccEEEEEEEEEEEEccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEccccccccccccccEEEcccccccccccccccEccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccEEEccccHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
MYLFVHFICFYSNIFGFETKVTSKFQCYVASCNSTLQYQSCFAISNEFMLQKIIPFYEVTAVRraktagifpNAIEIFAAGKKYFFASFLSRDEAFKLITDgwlqhgsgslasaeqqdsssetsspqngpvviekvnccsadpiaksdsiireedlssdsklpanvemtpvemqddnveqdfepvldtdslhpiktsswniensdapkipecyTKVAETNFQMKVEDFYSLFFSDDTVNFIESFHrkcgdkefkctswhrhyefgysrdlsfqhpikvyfgakfgscketqkfrvyrnshlvietsqevhdvpygdyfrvEGLWdvmrddggskegcILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMWIGMAHDVLKqknlekpeeggpaystvqnddvhservvntgetserlcnadhrirtlpitdsldasqsvgnllqgnlvDSAAIASLLRESMTKCCSFVKRQSGVSLILVIAFAVIFLMQVSILVLLnrpqhvhmasppdymgagvgvglgqrsaesipWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQLHKRE
MYLFVHFICFYSNIFGFETKVTSKFQCYVASCNSTLQYQSCFAISNEFMLQKIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGWLQHGSGSLASAEQQDSssetsspqngpVVIEKVNCCSADPiaksdsiireedlssdsklpaNVEMTPVEMQDDNVEQDFEPVLDTDSLHPiktsswniensdapkiPECYTKVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRVYRNSHLVietsqevhdvpyGDYFRVEGLWDVMRDDGGSKEGCILRVYVNvafskktvwkgkivqSTLEECRDVYAMWIGMAHDVLKQKNLEKPEEggpaystvqnddvhseRVVNtgetserlcnadHRIRTLPITDSLDASQSVGNLLQGNLVDSAAIASLLRESMTKCCSFVKRQSGVSLILVIAFAVIFLMQVSILVLLNRPQHVHMASPPDYMGAGVGVGLGQRSAESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLkdieqlhkre
MYLFVHFICFYSNIFGFETKVTSKFQCYVASCNSTLQYQSCFAISNEFMLQKIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGWLQHGSGSLASAEQQDSSSETSSPQNGPVVIEKVNCCSADPIAKSDSIIREEDLSSDSKLPANVEMTPVEMQDDNVEQDFEPVLDTDSLHPIKTSSWNIENSDAPKIPECYTKVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMWIGMAHDVLKQKNLEKPEEGGPAYSTVQNDDVHSERVVNTGETSERLCNADHRIRTLPITDSLDASQSVGNLLQGNLVDSAAIASLLRESMTKCCSFVKRQSGVSLILVIAFAVIFLMQVSILVLLNRPQHVHMASPPDYMGAGVGVGLGQRSAESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQLHKRE
*YLFVHFICFYSNIFGFETKVTSKFQCYVASCNSTLQYQSCFAISNEFMLQKIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGWLQH*************************VIEKVNCCSA*********************************************************WNI*****PKIPECYTKVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMWIGMAHDVL*************************************LCNADHRIRTLPITDSLDASQSVGNLLQGNLVDSAAIASLLRESMTKCCSFVKRQSGVSLILVIAFAVIFLMQVSILVLLNRPQHVHMASPPDYMGAGVGVGLGQRSAESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLK*********
MYLFVHFICFYSNIFGFETKVTSKFQCYVASCNSTLQYQSCFAISNEFMLQKIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGWLQHGSGSL*************SPQNGPVVIEKVNCCSADPIAKSDSIIREEDLSSDSKLPANVEMTPVEMQDDNVEQDFEPVLDTDSLHPIKTSSWNIENSDAPKIPECYTKVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMWIGMA**********************************************************************NLVDSAAIASLLRESMTKCCSFVKRQSGVSLILVIAFAVIFLMQVSILVLLNRPQHVH************************PWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLK**E******
MYLFVHFICFYSNIFGFETKVTSKFQCYVASCNSTLQYQSCFAISNEFMLQKIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGWLQHGS********************GPVVIEKVNCCSADPIAKSDSIIREEDLSSDSKLPANVEMTPVEMQDDNVEQDFEPVLDTDSLHPIKTSSWNIENSDAPKIPECYTKVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMWIGMAHDVLKQKNLEKPEEGGPAYSTVQNDDVHSERVVNTGETSERLCNADHRIRTLPITDSLDASQSVGNLLQGNLVDSAAIASLLRESMTKCCSFVKRQSGVSLILVIAFAVIFLMQVSILVLLNRPQHVHMASPPDYMGAGVGVGLGQRSAESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQLHKRE
MYLFVHFICFYSNIFGFETKVTSKFQCYVASCNSTLQYQSCFAISNEFMLQKIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGWLQHGS****************************************************************************************************IPECYTKVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMWIGMAHDVLKQK****************************************RIRTLPITDSLDASQSVGNLLQGNLVDSAAIASLLRESMTKCCSFVKRQSGVSLILVIAFAVIFLMQVSILVLLNRPQHVHMASPPDYMGAGV*VGLGQRSAESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQLH***
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MYLFVHFICFYSNIFGFETKVTSKFQCYVASCNSTLQYQSCFAISNEFMLQKIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGWLQHGSGSLASAEQQDSSSETSSPQNGPVVIEKVNCCSADPIAKSDSIIREEDLSSDSKLPANVEMTPVEMQDDNVEQDFEPVLDTDSLHPIKTSSWNIENSDAPKIPECYTKVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMWIGMAHDVLKQKNLEKPEEGGPAYSTVQNDDVHSERVVNTGETSERLCNADHRIRTLPITDSLDASQSVGNLLQGNLVDSAAIASLLRESMTKCCSFVKRQSGVSLILVIAFAVIFLMQVSILVLLNRPQHVHMASPPDYMGAGVGVGLGQRSAESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQLHKRE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query573 2.2.26 [Sep-21-2011]
Q06681 1438 GRAM domain-containing pr yes no 0.565 0.225 0.239 2e-11
Q8IYS0662 GRAM domain-containing pr yes no 0.537 0.465 0.236 1e-08
Q5RC33662 GRAM domain-containing pr yes no 0.542 0.469 0.233 1e-08
O42976764 Uncharacterized membrane yes no 0.164 0.123 0.298 2e-08
Q8VEF1722 GRAM domain-containing pr yes no 0.125 0.099 0.339 3e-08
Q3KR56723 GRAM domain-containing pr yes no 0.125 0.099 0.339 3e-08
Q96CP6724 GRAM domain-containing pr no no 0.125 0.099 0.339 3e-08
P38800 1345 Uncharacterized protein Y no no 0.129 0.055 0.342 4e-08
Q6PEM6445 GRAM domain-containing pr no no 0.171 0.220 0.291 8e-07
Q96HH9432 GRAM domain-containing pr no no 0.171 0.226 0.283 1e-06
>sp|Q06681|YSP2_YEAST GRAM domain-containing protein YSP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YSP2 PE=1 SV=1 Back     alignment and function desciption
 Score = 71.2 bits (173), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 93/389 (23%), Positives = 146/389 (37%), Gaps = 65/389 (16%)

Query: 1    MYLFVHFICFYSNIFGFETKVTSKFQCYVASCNSTLQYQSCFAISNEFMLQKIIPFYEVT 60
            MY+    I F+SNI G+ + V                                IPF E+ 
Sbjct: 682  MYISDAHIGFFSNILGWVSTV-------------------------------FIPFKEIV 710

Query: 61   AVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGWLQ--------HGSGSLA 112
             + +  TAGIFPN I I     KY FASF+SRD  F LITD W Q        +G G+  
Sbjct: 711  QIEKKTTAGIFPNGIVIDTLHTKYIFASFMSRDATFDLITDVWNQIILGKKYRNGFGNND 770

Query: 113  SAEQQDSSSETSSPQNGPVVIEKVNCCSADPIAKSDSIIREEDLSSDSKLPANVEMTPVE 172
                 DSSS            +  +      +   D  I   D++S   + A+V     E
Sbjct: 771  DGTISDSSSA--------FFDDSDDNDDDGDLDDDDPDINSTDMTSSDDIDADVFN---E 819

Query: 173  MQDDNVEQDFEPVLDTDSLHPIKTSSWNIENSDAPKIPECYTKVAETNFQMKVEDFYSLF 232
              D    Q     L   + H   T+ +   N+D          V E N    +    +L 
Sbjct: 820  SNDLGKNQKSTNYLLGPNKHSPTTADFKPSNNDH--------LVIEANINAPLGKVVNLL 871

Query: 233  FSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQK 292
            + +D V++ E   +    K F+ +    ++     RD ++  P+    G     C  T  
Sbjct: 872  YGED-VSYYERILK--AQKNFEISPIPNNFLTKKIRDYAYTKPLSGSIGPSKTKCLITDT 928

Query: 293  FRVYR-NSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKT 351
               Y    ++ + +  +  DVP G+ F V+ ++    D   S +   L VY +V ++ K+
Sbjct: 929  LEHYDLEDYVKVLSITKNPDVPSGNIFSVKTVFLFSWDKNNSTK---LTVYNSVDWTGKS 985

Query: 352  VWKGKIVQSTLEECRDVYAMWIGMAHDVL 380
              K  I + T +   D   + I     +L
Sbjct: 986  WIKSMIEKGTFDGVADTTKIMISEIKKIL 1014




Involved in induction of programmed cell death in response to reactive oxygen species (ROS).
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
>sp|Q8IYS0|GRM1C_HUMAN GRAM domain-containing protein 1C OS=Homo sapiens GN=GRAMD1C PE=2 SV=2 Back     alignment and function description
>sp|Q5RC33|GRM1C_PONAB GRAM domain-containing protein 1C OS=Pongo abelii GN=GRAMD1C PE=2 SV=1 Back     alignment and function description
>sp|O42976|YGZ7_SCHPO Uncharacterized membrane protein C20F10.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC20F10.07 PE=1 SV=1 Back     alignment and function description
>sp|Q8VEF1|GRM1A_MOUSE GRAM domain-containing protein 1A OS=Mus musculus GN=Gramd1a PE=2 SV=2 Back     alignment and function description
>sp|Q3KR56|GRM1A_RAT GRAM domain-containing protein 1A OS=Rattus norvegicus GN=Gramd1a PE=2 SV=2 Back     alignment and function description
>sp|Q96CP6|GRM1A_HUMAN GRAM domain-containing protein 1A OS=Homo sapiens GN=GRAMD1A PE=1 SV=2 Back     alignment and function description
>sp|P38800|YHO0_YEAST Uncharacterized protein YHR080C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YHR080C PE=1 SV=1 Back     alignment and function description
>sp|Q6PEM6|GRAM3_MOUSE GRAM domain-containing protein 3 OS=Mus musculus GN=Gramd3 PE=1 SV=2 Back     alignment and function description
>sp|Q96HH9|GRAM3_HUMAN GRAM domain-containing protein 3 OS=Homo sapiens GN=GRAMD3 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query573
255541038644 conserved hypothetical protein [Ricinus 0.933 0.830 0.556 1e-179
225453378639 PREDICTED: GRAM domain-containing protei 0.926 0.830 0.568 1e-172
255317086618 vascular associated death 1 [Glycine max 0.900 0.834 0.529 1e-161
449432984648 PREDICTED: GRAM domain-containing protei 0.923 0.816 0.515 1e-152
356533291633 PREDICTED: GRAM domain-containing protei 0.886 0.802 0.522 1e-150
79334443598 GRAM domain family protein [Arabidopsis 0.851 0.816 0.468 1e-137
297848286598 hypothetical protein ARALYDRAFT_470058 [ 0.848 0.812 0.463 1e-136
356577522 803 PREDICTED: uncharacterized protein LOC10 0.762 0.544 0.517 1e-123
147782373638 hypothetical protein VITISV_044292 [Viti 0.870 0.782 0.443 1e-115
414590305623 TPA: hypothetical protein ZEAMMB73_97819 0.877 0.807 0.394 1e-107
>gi|255541038|ref|XP_002511583.1| conserved hypothetical protein [Ricinus communis] gi|223548763|gb|EEF50252.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  634 bits (1634), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 323/580 (55%), Positives = 416/580 (71%), Gaps = 45/580 (7%)

Query: 1   MYLFVHFICFYSNIFGFETKVTSKFQCYVASCNSTLQYQSCFAISNEFMLQKIIPFYEVT 60
           MYLF H+ICFYSNIFGFETK                               K+IPF EV+
Sbjct: 101 MYLFSHYICFYSNIFGFETK-------------------------------KVIPFIEVS 129

Query: 61  AVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGWLQHGSGSLASAEQQDSS 120
           +V+RAKTAGIFPNAIEIFA  +KYFFASFLSRDEAFKLI DGWLQ  +G+ A  E+Q+S 
Sbjct: 130 SVKRAKTAGIFPNAIEIFAGERKYFFASFLSRDEAFKLINDGWLQCVNGARAITEEQESM 189

Query: 121 SETSSPQNGPVVIEKVNCCSADPIAKSDSIIREED--LSSDSKLPA----NVEMTPVEMQ 174
              SS  +  ++IEKVN      I + DS  R+ D  LS+D  L A     +E  P  + 
Sbjct: 190 ISGSSSLDNGIIIEKVNSFRG--INELDSDDRDNDVSLSNDYMLSAPSAVEIERAPERLT 247

Query: 175 D--DNVEQDFEPVLDTDSLHPIKTSSWNIENSDAPKIPECYTKVAETNFQMKVEDFYSLF 232
           +  DNV++D EPV D  +     TS WN E+++ P+I + YT+V ET F +KVE+F++ F
Sbjct: 248 EIKDNVKKDVEPV-DYITSSSSTTSIWNEEDAEPPEIRKSYTRVGETKFPIKVEEFFNFF 306

Query: 233 FSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQK 292
           FSDD  NFIESFH++CGDKEF+C+ W    + G++R++SFQHPIK+YFGAKFGSC+E QK
Sbjct: 307 FSDDASNFIESFHQRCGDKEFRCSLWQPQEKLGHTRNVSFQHPIKIYFGAKFGSCQEKQK 366

Query: 293 FRVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTV 352
           F+VYRNSHLVIETSQE++DVPYGDYFRVEGLWDV++D   S EGC+L++YV+VAFSKKTV
Sbjct: 367 FQVYRNSHLVIETSQEINDVPYGDYFRVEGLWDVVKDADESNEGCLLQIYVDVAFSKKTV 426

Query: 353 WKGKIVQSTLEECRDVYAMWIGMAHDVLKQKNLEKPEEGGPAYSTVQNDDVHSERVVNTG 412
           +KGKIVQSTLEECR+ YA WI MAH++LKQKNLE  EEG    + +QN +VH+E  + + 
Sbjct: 427 FKGKIVQSTLEECREAYATWINMAHELLKQKNLESREEGP---NVIQNVEVHTEVALRSV 483

Query: 413 ETSERLCNADHRIRTLPITDSLDASQSVGNLLQGNLVDSAAIASLLRESMTKCCSFVKRQ 472
           ETSE+   ++ R R   ++ SLD ++ VG+L+Q N  ++ A+ASLLRE  T+  +F++ Q
Sbjct: 484 ETSEKSSQSNDRGRIAQMSGSLDVNERVGDLVQENFTNATAVASLLREYATRFSTFLRSQ 543

Query: 473 SGVSLILVIAFAVIFLMQVSILVLLNRPQHVHMASPPDYMGAGVGVGLGQRSAESIPWLE 532
           S VSLILV+AF VIFLMQVSILVLLNRPQ V +ASP +Y   G+G  +G RS E++ WLE
Sbjct: 544 SQVSLILVVAFVVIFLMQVSILVLLNRPQTVQVASPGEYYMGGMGSSMGDRSTEAVAWLE 603

Query: 533 RRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQLHKR 572
           RR+H+LKDEM MVE +LER+ HEH  ++AQLKD++ L  R
Sbjct: 604 RRIHHLKDEMFMVEGQLERLRHEHNWIKAQLKDLDGLRNR 643




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453378|ref|XP_002271102.1| PREDICTED: GRAM domain-containing protein 1A [Vitis vinifera] gi|297734616|emb|CBI16667.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255317086|gb|ACU01863.1| vascular associated death 1 [Glycine max] Back     alignment and taxonomy information
>gi|449432984|ref|XP_004134278.1| PREDICTED: GRAM domain-containing protein 1A-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356533291|ref|XP_003535199.1| PREDICTED: GRAM domain-containing protein 1A-like [Glycine max] Back     alignment and taxonomy information
>gi|79334443|ref|NP_171714.2| GRAM domain family protein [Arabidopsis thaliana] gi|332189265|gb|AEE27386.1| GRAM domain family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297848286|ref|XP_002892024.1| hypothetical protein ARALYDRAFT_470058 [Arabidopsis lyrata subsp. lyrata] gi|297337866|gb|EFH68283.1| hypothetical protein ARALYDRAFT_470058 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356577522|ref|XP_003556873.1| PREDICTED: uncharacterized protein LOC100819859 [Glycine max] Back     alignment and taxonomy information
>gi|147782373|emb|CAN61799.1| hypothetical protein VITISV_044292 [Vitis vinifera] Back     alignment and taxonomy information
>gi|414590305|tpg|DAA40876.1| TPA: hypothetical protein ZEAMMB73_978197 [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query573
TAIR|locus:2205625598 VAD1 "VASCULAR ASSOCIATED DEAT 0.626 0.600 0.554 5e-134
DICTYBASE|DDB_G0267942898 DDB_G0267942 "GRAM domain-cont 0.539 0.344 0.275 4.4e-24
WB|WBGene00022593616 ZC328.3 [Caenorhabditis elegan 0.541 0.503 0.240 6.9e-13
SGD|S000002734 1438 YSP2 "Protein involved in prog 0.547 0.218 0.243 1.7e-10
CGD|CAL00017811073 orf19.4423 [Candida albicans ( 0.089 0.047 0.490 4e-10
UNIPROTKB|Q59WE71073 CaO19.11901 "Potential GRAM do 0.089 0.047 0.490 4e-10
UNIPROTKB|Q96CP6724 GRAMD1A "GRAM domain-containin 0.108 0.085 0.430 2.1e-09
MGI|MGI:105490722 Gramd1a "GRAM domain containin 0.108 0.085 0.430 2.8e-08
RGD|1311022723 Gramd1a "GRAM domain containin 0.108 0.085 0.430 4.5e-08
SGD|S000001122 1345 YHR080C "Protein of unknown fu 0.125 0.053 0.402 3.2e-07
TAIR|locus:2205625 VAD1 "VASCULAR ASSOCIATED DEATH1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1012 (361.3 bits), Expect = 5.0e-134, Sum P(3) = 5.0e-134
 Identities = 209/377 (55%), Positives = 261/377 (69%)

Query:    41 CFAISNEFMLQ--KIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKL 98
             CF  SN F  +  KIIPF E++ V+RAKTAGIFPNAIEI A GKKYFFASFLSRDEAFKL
Sbjct:   110 CF-YSNIFGYETKKIIPFAEISCVKRAKTAGIFPNAIEILAGGKKYFFASFLSRDEAFKL 168

Query:    99 ITDGWLQHGSGSLASAEQQDSSSETSSPQNGPVVIEKVNCCSADPIAKSDSIIREEDL-- 156
             I DGWL++GS     A + +     + PQ    V+++    S D   + D  +R+E L  
Sbjct:   169 IHDGWLEYGS-----AVKSEGEILVTEPQVSDGVVKRARS-SMDLANELDIPVRDETLHL 222

Query:   157 SSDSKLPANVEMTPVEMQDDNVEQDFEPVLDTDSLHPIKTSSWNIENSDAPKIPECYTKV 216
             SS S LP  +    V     +V++  EP +D  + +   T +W  E++DAPK+   +TKV
Sbjct:   223 SSSSSLPV-ISQNGVP--PSSVQRHAEPDVDVVAAN---TFNWKPEDTDAPKLSSDFTKV 276

Query:   217 AETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPI 276
             AE  F + VE+F+ LFFSD  V+F+ESFH+ CGDKEF+CTSW  H + G++R++SFQHPI
Sbjct:   277 AEAKFSIPVEEFFRLFFSDGAVSFVESFHKNCGDKEFRCTSWQPHEKLGHTRNVSFQHPI 336

Query:   277 KVYFGAKFGSCKETQKFRVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEG 336
             K+YFGAKFG C+E+QKFR+YRNSHLVIETSQE+ DVPY DYF VEG+WD+ RD   S EG
Sbjct:   337 KIYFGAKFGGCQESQKFRMYRNSHLVIETSQEISDVPYADYFTVEGVWDLKRDCRDSVEG 396

Query:   337 CILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMWIGMAHDVLKQKNLEKPEEGGPAYS 396
             CIL VYVNVAFSK+TVWKGKIVQSTLEECR+ YA WI MAH++LKQK LE  +EG     
Sbjct:   397 CILDVYVNVAFSKRTVWKGKIVQSTLEECREAYAHWIRMAHELLKQKKLEN-QEGNKLIE 455

Query:   397 TVQNDDVHSERVVNTGE 413
               +      ERV    E
Sbjct:   456 DGEPLAAREERVSECDE 472


GO:0005634 "nucleus" evidence=ISM
GO:0042742 "defense response to bacterium" evidence=IMP
GO:0043069 "negative regulation of programmed cell death" evidence=IMP
GO:0005783 "endoplasmic reticulum" evidence=IDA
DICTYBASE|DDB_G0267942 DDB_G0267942 "GRAM domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
WB|WBGene00022593 ZC328.3 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
SGD|S000002734 YSP2 "Protein involved in programmed cell death" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
CGD|CAL0001781 orf19.4423 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q59WE7 CaO19.11901 "Potential GRAM domain protein" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
UNIPROTKB|Q96CP6 GRAMD1A "GRAM domain-containing protein 1A" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:105490 Gramd1a "GRAM domain containing 1A" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1311022 Gramd1a "GRAM domain containing 1A" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
SGD|S000001122 YHR080C "Protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
GSVIVG00019086001
SubName- Full=Chromosome chr15 scaffold_19, whole genome shotgun sequence; (640 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query573
cd13220111 cd13220, PH-GRAM_GRAMDC, GRAM domain-containing pr 2e-32
cd13351125 cd13351, PH-GRAM1_TCB1D9_TCB1D9B, TBC1 domain fami 5e-06
cd13217100 cd13217, PH-GRAM1_TCB1D8_TCB1D9_family, TCB1D8 and 0.002
cd1321896 cd13218, PH-GRAM2_TCB1D8_TCB1D9_family, TCB1D8 and 0.004
>gnl|CDD|241374 cd13220, PH-GRAM_GRAMDC, GRAM domain-containing protein (GRAMDC) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain Back     alignment and domain information
 Score =  120 bits (303), Expect = 2e-32
 Identities = 43/110 (39%), Positives = 56/110 (50%), Gaps = 31/110 (28%)

Query: 1   MYLFVHFICFYSNIFGFETKVTSKFQCYVASCNSTLQYQSCFAISNEFMLQKIIPFYEVT 60
           +Y+  + ICFYSNIFG+ETK+                                IPF ++T
Sbjct: 30  LYISENHICFYSNIFGWETKLV-------------------------------IPFKDIT 58

Query: 61  AVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGWLQHGSGS 110
           ++ + KTAG+FPNAI+I    +KYFFASFLSRD  F LIT  W       
Sbjct: 59  SIEKKKTAGLFPNAIQIETLTEKYFFASFLSRDSTFDLITRVWSNALLEK 108


The GRAMDC proteins are membrane proteins. Nothing is known about its function. Members include: GRAMDC1A, GRAMDC1B, GRAMDC1C, GRAMDC2, GRAMDC3, GRAMDC4, and GRAMDC-like proteins. All of the members, except for GRAMDC4 are included in this hierarchy. Each contains a single PH-GRAM domain at their N-terminus. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 111

>gnl|CDD|241505 cd13351, PH-GRAM1_TCB1D9_TCB1D9B, TBC1 domain family members 9 and 9B (TBC1D9 and TBC1D9B) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 1 Back     alignment and domain information
>gnl|CDD|241371 cd13217, PH-GRAM1_TCB1D8_TCB1D9_family, TCB1D8 and TCB1D9 family Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 1 Back     alignment and domain information
>gnl|CDD|241372 cd13218, PH-GRAM2_TCB1D8_TCB1D9_family, TCB1D8 and TCB1D9 family Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 2 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 573
KOG1032590 consensus Uncharacterized conserved protein, conta 100.0
PF0289369 GRAM: GRAM domain; InterPro: IPR004182 The GRAM do 98.19
smart0056861 GRAM domain in glucosyltransferases, myotubularins 98.06
PF10698159 DUF2505: Protein of unknown function (DUF2505); In 97.01
KOG1032590 consensus Uncharacterized conserved protein, conta 95.1
PF1447096 bPH_3: Bacterial PH domain 94.23
cd08876195 START_1 Uncharacterized subgroup of the steroidoge 92.41
KOG4347671 consensus GTPase-activating protein VRP [General f 92.35
cd05018144 CoxG Carbon monoxide dehydrogenase subunit G (CoxG 91.58
cd08905209 START_STARD1-like Cholesterol-binding START domain 91.19
cd08868208 START_STARD1_3_like Cholesterol-binding START doma 90.99
cd08904204 START_STARD6-like Lipid-binding START domain of ma 90.96
PF14844106 PH_BEACH: PH domain associated with Beige/BEACH; P 90.59
cd08906209 START_STARD3-like Cholesterol-binding START domain 89.28
cd08871222 START_STARD10-like Lipid-binding START domain of m 89.04
cd07821140 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), 88.82
PF00407151 Bet_v_1: Pathogenesis-related protein Bet v I fami 87.83
cd00177193 START Lipid-binding START domain of mammalian STAR 84.77
smart00234206 START in StAR and phosphatidylcholine transfer pro 83.65
PF10805106 DUF2730: Protein of unknown function (DUF2730); In 80.85
>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown] Back     alignment and domain information
Probab=100.00  E-value=5.6e-45  Score=404.26  Aligned_cols=442  Identities=23%  Similarity=0.317  Sum_probs=316.3

Q ss_pred             CceeceeeeeeecccCceeeeecceeeeeccccCccccccccccccccceeEEEeccceeEEEEeccccccCceEEEEeC
Q 008222            1 MYLFVHFICFYSNIFGFETKVTSKFQCYVASCNSTLQYQSCFAISNEFMLQKIIPFYEVTAVRRAKTAGIFPNAIEIFAA   80 (573)
Q Consensus         1 ~~~~~~~~~f~~~~~~~~~k~~~~f~c~~~~~~~~~~~~~~~~~~~~~~~~~~Ip~~dI~~I~K~~ta~i~pNaI~I~t~   80 (573)
                      ||++++|||||||||||++|                               ++|||.+|+.|+|++||++|||||+|.|+
T Consensus       141 myis~~~icF~s~i~gw~~~-------------------------------~vIpf~eI~~ikk~~tag~fpn~i~i~t~  189 (590)
T KOG1032|consen  141 MYISEEHICFNSNIFGWETK-------------------------------VVIPFDEITLIKKTKTAGIFPNAIEITTG  189 (590)
T ss_pred             cccccceeeecccccCccce-------------------------------eEEeeeeeeeeehhhhccCCCcceEEecC
Confidence            89999999999999999999                               99999999999999999999999999999


Q ss_pred             CcEEEEEeecChHHHHHHHHHHHhhcCCCCCCchhhcccCCCCCCCCCCcccccccccCCCCCCCCcCcccccccCCCCC
Q 008222           81 GKKYFFASFLSRDEAFKLITDGWLQHGSGSLASAEQQDSSSETSSPQNGPVVIEKVNCCSADPIAKSDSIIREEDLSSDS  160 (573)
Q Consensus        81 ~~k~~F~SF~sRD~af~li~~~w~~~~~~~~~~~e~~~~~s~~ss~~~g~~~~e~~~~~~~~~~s~~~~~~~~~~~s~~s  160 (573)
                      +.+|+|+||++||+||++|.-+-+..-...........+...+                .. +....+  .+        
T Consensus       190 ~~ky~f~s~~Srda~~~~~~~~~~~~~~~s~s~~~~~~~l~~~----------------~~-~~~~~~--~~--------  242 (590)
T KOG1032|consen  190 TTKYIFVSLLSRDATYKLIKLLLHKFLDSSGSPRADSDYLSSV----------------EP-EVNDDQ--QG--------  242 (590)
T ss_pred             CCcceeeecccCccHHHHHHHhhhhcccccCCccccchhcccC----------------CC-CcCccc--cc--------
Confidence            9999999999999999977333222110000000000000000                00 000000  00        


Q ss_pred             CCCCCCCCCCccccCCCccccccCccCCCCCCCCCCCCCCCCCCCCCCCCccceEEEEeEEecCHHHHHhhhccCCchHH
Q 008222          161 KLPANVEMTPVEMQDDNVEQDFEPVLDTDSLHPIKTSSWNIENSDAPKIPECYTKVAETNFQMKVEDFYSLFFSDDTVNF  240 (573)
Q Consensus       161 ~~p~~v~~t~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~e~~~~P~~~~~~~~l~e~~fpisv~~lF~lLF~D~s~~F  240 (573)
                          +++..+.+..    .+....++..+       ....   ......+....++.+..|.+++..+|+++|+|+  .|
T Consensus       243 ----~~~~~~~~s~----~~~s~~~~~~e-------~~~~---~~~~~~~~~~~v~~~~~~s~~~~~~~~~lf~d~--~~  302 (590)
T KOG1032|consen  243 ----NVDNSQSPSA----LQNSFDSPKEE-------ELEH---DFSCSLSRLFGVLGRLPFSAPIGAFFSLLFGDN--TF  302 (590)
T ss_pred             ----ccccCCCccc----cccccCCCccc-------cccc---cccccccccccccccccccccccccceeeccCc--ce
Confidence                0000000000    00000000000       0000   001112233447889999999999999999976  58


Q ss_pred             HHHHHHHcCCcceEeccccccCCCCceEEEEEEeeecccCCCceeeeeEEEEEEeeeCCe-EEEEEeeecCCCCCCCeeE
Q 008222          241 IESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRVYRNSH-LVIETSQEVHDVPYGDYFR  319 (573)
Q Consensus       241 l~~f~~~rg~tdi~~spW~~~~~~~~tR~vsYt~PL~~p~GPKst~c~etQ~i~~~~~~~-yVVet~t~t~DVPYGDsF~  319 (573)
                      +..|.+.++..++...+|.....+...|.++|++++..+.|||+|.|..+|++.+++... |.|..++.|++||||++|+
T Consensus       303 ~~~~l~~~~~~~vs~~~~~~~~~~~~~r~~~y~~~l~~~~gPk~t~~~~~~~l~~~~~~~~~~vls~t~~~~vps~~~f~  382 (590)
T KOG1032|consen  303 FFFFLEDQDEIQVSPIPWKGPRSGILLRTLSYTKGLPAKSGPKSTDCEGTQTLHHQDLEKYFRVLSETLTPDVPSGDSFY  382 (590)
T ss_pred             eeeccccccccccccccccCCCccceeEeccCCccCCCcCCCccccccceeeEEeccchhhhhhhheeccCCccccceee
Confidence            899999999999999999988888899999999999999999999999999999988654 7789999999999999999


Q ss_pred             EEEEEEEEecCCCCCCceEEEEEEEEEEcccccchhhhhhchHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCcccccc
Q 008222          320 VEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMWIGMAHDVLKQKNLEKPEEGGPAYSTVQ  399 (573)
Q Consensus       320 Ve~R~~It~~~~~s~~~CrL~V~~~V~F~KsT~~Ks~IEkst~~g~ke~~~~~v~~l~e~lk~~~~k~~~~~~~~~~~~~  399 (573)
                      |.+||+|.|+   +++.|+++++++|.|.|++|.+.+++.++.     ..+.+++.+.++++..  +...+..+.     
T Consensus       383 v~~~y~i~~~---~~~~~~l~v~~~V~~~~~sw~~~~~~~~~~-----~~k~lv~~~~~~~~~~--e~~~~~~~~-----  447 (590)
T KOG1032|consen  383 VKTRYLISRA---GSNSCKLKVSTSVEWTKSSWDVPVSEIGSN-----TLKDLVEILEKLLENG--EELAKNQEK-----  447 (590)
T ss_pred             eeEEEEEEec---CCcceeecceeEEEeccCchhhcccccccc-----chhhHHHHHHHHHhcc--HHHHHhhcc-----
Confidence            9999999997   457999999999999999999999988776     4444555555555411  111111111     


Q ss_pred             cCCccccceeccccccccccccCCccccccccCcccccccccccccccccchHHHHHHHHHHHhhhhccccccCCceeeh
Q 008222          400 NDDVHSERVVNTGETSERLCNADHRIRTLPITDSLDASQSVGNLLQGNLVDSAAIASLLRESMTKCCSFVKRQSGVSLIL  479 (573)
Q Consensus       400 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  479 (573)
                          ...+..      +++   ..++..   .   .     +.-.          -..++|.|.+-.+..+++.+...+.
T Consensus       448 ----~~~~~~------~~~---~~~v~~---~---~-----~~v~----------~~~~~~~~~~~i~~~~~~~~~~~i~  493 (590)
T KOG1032|consen  448 ----EDELTY------EGS---PWEVEK---P---G-----GTVR----------QLSYKEVWNKPISPDKREVTLLQVV  493 (590)
T ss_pred             ----cccccc------cCC---CccccC---C---C-----ceee----------eeccccccccccccccccceeEEEE
Confidence                000000      000   000100   0   0     0000          1114455777777788888888888


Q ss_pred             hhHHHHHHHHhheeeeeecCCCceeecCCCcccCCCcccCCCCCCCcchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHH
Q 008222          480 VIAFAVIFLMQVSILVLLNRPQHVHMASPPDYMGAGVGVGLGQRSAESIPWLERRMHYLKDEMLMVEARLERMWHEHAVL  559 (573)
Q Consensus       480 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~r~~~~~~e~~~~e~~~~~~~~~~~~~  559 (573)
                      +.+...|++|+..|+.|...|-.-+.+.|.+|-   .+...+..-..+..|+++|++-||+.|.+|++..+.||...+.|
T Consensus       494 ~l~~~~~~~l~~~i~~l~~~~~g~~~~~h~r~~---~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~~~~k~~~r~~~~~l  570 (590)
T KOG1032|consen  494 VLVPLKILWLLNTILFLHDVPFGSYFEVHERYR---EALDETSKVKTTLVWVSFRIEWLKDIKMEARKIKQILRNDQDLL  570 (590)
T ss_pred             EEehhhhhHHHHHHhhccCCCCccceeeehhhh---hhhcccchhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            888888999999999999999999999999994   34456667788999999999999999999999999999999999


Q ss_pred             HHHHhhHHHhhhc
Q 008222          560 RAQLKDIEQLHKR  572 (573)
Q Consensus       560 ~~~~~~~~~~~~~  572 (573)
                      +..+..||+|.++
T Consensus       571 ~~~~~~l~~~~~~  583 (590)
T KOG1032|consen  571 EVLFSLLEKLSQS  583 (590)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999998753



>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins Back     alignment and domain information
>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins Back     alignment and domain information
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria Back     alignment and domain information
>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown] Back     alignment and domain information
>PF14470 bPH_3: Bacterial PH domain Back     alignment and domain information
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family Back     alignment and domain information
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only] Back     alignment and domain information
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG) Back     alignment and domain information
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins Back     alignment and domain information
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins Back     alignment and domain information
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins Back     alignment and domain information
>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C Back     alignment and domain information
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins Back     alignment and domain information
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins Back     alignment and domain information
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins Back     alignment and domain information
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms Back     alignment and domain information
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins Back     alignment and domain information
>smart00234 START in StAR and phosphatidylcholine transfer protein Back     alignment and domain information
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query573
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 46.0 bits (108), Expect = 3e-05
 Identities = 61/534 (11%), Positives = 144/534 (26%), Gaps = 175/534 (32%)

Query: 116 QQDSSSETSSPQNGPVVIEKVNCCSADPIAKSDSIIREEDLSSDSKLPANVEMT-----P 170
           +     +          ++  +C     + KS  I+ +E++         V  T      
Sbjct: 13  EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKS--ILSKEEIDHIIMSKDAVSGTLRLFWT 70

Query: 171 VEMQDDNVEQDF-EPVLDTDSLHPIKTSSWNIENSDAPKIPECYTKVAETNFQMKVEDFY 229
           +  + + + Q F E VL  +  +    S    E     + P   T+     +  + +  Y
Sbjct: 71  LLSKQEEMVQKFVEEVLRIN--YKFLMSPIKTE----QRQPSMMTR----MYIEQRDRLY 120

Query: 230 S--LFFSDDTVNFIESFHR-KCGDKEFKCTSW---HRHYEFGYS-------RDLSFQH-- 274
           +    F+   V+ ++ + + +    E +             G +            Q   
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180

Query: 275 PIKVYFGAKFGSCKET-------QKFRVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVM 327
             K+++     +C          QK       + +        D       R+  +   +
Sbjct: 181 DFKIFW-LNLKNCNSPETVLEMLQKL-----LYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 328 R---------------DDGGSKE-------GC-IL---RVYVNVAFSKKTVWKGKIVQS- 360
           R                +  + +        C IL   R +  V           I    
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR-FKQVTDFLSAATTTHISLDH 293

Query: 361 -----TLEECRDVYAMWIGMAHDVLKQKNLEKPEE---GGP-AYSTVQNDDVHSERVVNT 411
                T +E + +   ++      L       P E     P   S +      +E + + 
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDL-------PREVLTTNPRRLSII------AESIRDG 340

Query: 412 GETSERLCNADH-RIRTLPITDSLDASQSVGNLLQGNLVDSAAIASLLRESMTKCCSFVK 470
             T +   + +  ++ T+ I  SL+  +                 +  R+   +      
Sbjct: 341 LATWDNWKHVNCDKLTTI-IESSLNVLEP----------------AEYRKMFDRL----- 378

Query: 471 RQSGVSLILVIAFAVIFLMQVSILVLLNRPQHVHMASPPDYMGAGVGVGLGQRSAESIPW 530
                          +F            P   H+  P   +              S+ W
Sbjct: 379 --------------SVF------------PPSAHI--PTILL--------------SLIW 396

Query: 531 LERRMHYLKDEMLMVEAR----LERMWHE-----HAV---LRAQLKDIEQLHKR 572
            +  +      +++ +      +E+   E      ++   L+ +L++   LH+ 
Sbjct: 397 FD--VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS 448


Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query573
2qim_A158 PR10.2B; trans-zeatin, cytokinin, plant hormones, 93.76
1em2_A229 MLN64 protein; beta barrel, lipid binding protein; 92.52
1icx_A155 Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, 92.5
1tw0_A157 Pathogenesis-related class 10 protein SPE-16; seve 92.49
1e09_A159 PRU AV 1; allergen, major cherry allergen, pathoge 92.16
4a8u_A159 Major pollen allergen BET V 1-J; PR-10 protein; 1. 92.03
3p0l_A221 Steroidogenic acute regulatory protein, mitochond; 91.25
2flh_A155 Cytokinin-specific binding protein; zeatin, pathog 90.87
2i9y_A166 Major latex protein-like protein 28 or MLP-like pr 90.86
3rws_A168 MTN13 protein; zeatin, cytokinin, hormone, lucerne 90.66
1jss_A224 Stard4, cholesterol-regulated start protein 4; sta 90.4
2vjg_A154 Major allergen DAU C 1; major carrot allergen, pat 90.1
2wql_A154 Major allergen DAU C 1; pathogenesis-related prote 89.16
2pcs_A162 Conserved protein; structural genomics, unknown fu 87.84
2r55_A231 STAR-related lipid transfer protein 5; alpha and b 87.06
3qsz_A189 STAR-related lipid transfer protein; structural ge 86.72
1ln1_A214 PC-TP, phosphatidylcholine transfer protein; start 85.14
2ns9_A157 Hypothetical protein APE2225; uncharacterized cons 84.98
2vq5_A201 S-norcoclaurine synthase; lyase, S- norcoclaurine 84.75
2pso_A237 STAR-related lipid transfer protein 13; alpha and 84.05
3ie5_A165 Phenolic oxidative coupling protein HYP-1; hyperic 80.5
>2qim_A PR10.2B; trans-zeatin, cytokinin, plant hormones, plant protein, PR-1 protein, pathogenesis-related protein, allergen; HET: ZEA; 1.35A {Lupinus luteus} PDB: 3e85_A* 1xdf_A* 2k7h_A Back     alignment and structure
Probab=93.76  E-value=3.7  Score=37.49  Aligned_cols=151  Identities=12%  Similarity=0.030  Sum_probs=84.1

Q ss_pred             eEEEEeEEecCHHHHHhhhccCCchHHHHHHHHHcCCcceEeccccccCCCCceEEEEEEeeecccCCCceeeeeEEEEE
Q 008222          214 TKVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKF  293 (573)
Q Consensus       214 ~~l~e~~fpisv~~lF~lLF~D~s~~Fl~~f~~~rg~tdi~~spW~~~~~~~~tR~vsYt~PL~~p~GPKst~c~etQ~i  293 (573)
                      +...+.++++|++++|.++-.|-. +.+.+++......++.-+.|.    .|..|.++|. +     |.+..  ..++++
T Consensus         5 ~~~~e~~i~a~a~kvw~~~~~d~~-~~~pk~~~~i~s~~i~eGdgg----~Gsir~~~~~-~-----g~~~~--~~kErl   71 (158)
T 2qim_A            5 TFQDEYTSTIAPAKLYKALVTDAD-IIIPKAVETIQSVEIVEGNGG----PGTIKKLTFI-E-----GGESK--YVLHKI   71 (158)
T ss_dssp             EEEEEEEESSCHHHHHHHHTTTHH-HHHHHHCTTEEEEEEEESSSS----TTCEEEEEEE-E-----TTEEE--EEEEEE
T ss_pred             EEEEEEEecCCHHHHHHHHhcCcc-chhhhHHhhCcEEEEEecCCC----CCeEEEEEEc-C-----CCcce--eEEEEE
Confidence            456678899999999997653431 355666533344445556662    2678999886 2     33322  245666


Q ss_pred             EeeeCCeEEEEEeeecCCCCCCCeeEEEEEEEEEecCCCCCCceEEEEEEEEEEcccccchhhhhhchHHHHHHHHHHHH
Q 008222          294 RVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMWI  373 (573)
Q Consensus       294 ~~~~~~~yVVet~t~t~DVPYGDsF~Ve~R~~It~~~~~s~~~CrL~V~~~V~F~KsT~~Ks~IEkst~~g~ke~~~~~v  373 (573)
                      ...++....+.-+..-.|+.-..+=.....|.+.+.+   .++|.++..+  +|.+..  -........+..++.+..+.
T Consensus        72 ~~~D~~~~~~~y~iieG~~~~~~~~~~~~~~~v~~~~---~~gs~v~wt~--~y~~~~--~~~~~~~~~~~~~~~~~~~~  144 (158)
T 2qim_A           72 EAIDEANLGYNYSIVGGVGLPDTIEKISFETKLVEGA---NGGSIGKVTI--KIETKG--DAQPNEEEGKAAKARGDAFF  144 (158)
T ss_dssp             EEEEGGGTEEEEEEEEESSCCCSEEEEEEEEEEEECS---TTCEEEEEEE--EEEEST--TCCCCHHHHHHHHHHHHHHH
T ss_pred             EEEecCCCEEEEEEEeccCCccceEEEEEEEEEEecC---CCCEEEEEEE--EEEECC--CCCCCHHHHHHHHHHHHHHH
Confidence            6555433222222222232111233345567777752   3468665544  454321  11112223334578899999


Q ss_pred             HHHHHHHhhcc
Q 008222          374 GMAHDVLKQKN  384 (573)
Q Consensus       374 ~~l~e~lk~~~  384 (573)
                      +.+.+||.+++
T Consensus       145 k~ie~yll~~p  155 (158)
T 2qim_A          145 KAIESYLSAHP  155 (158)
T ss_dssp             HHHHHHHHHCS
T ss_pred             HHHHHHHHhCc
Confidence            99999998774



>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2 Back     alignment and structure
>1icx_A Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, C-terminal helix, allergen; 1.95A {Lupinus luteus} SCOP: d.129.3.1 PDB: 1ifv_A Back     alignment and structure
>1tw0_A Pathogenesis-related class 10 protein SPE-16; seven antiparallel beta-sheet, plant protein; 2.20A {Pachyrhizus erosus} SCOP: d.129.3.1 PDB: 1txc_A* Back     alignment and structure
>1e09_A PRU AV 1; allergen, major cherry allergen, pathogenesis-related protein, heteronuclear structure; NMR {Prunus avium} SCOP: d.129.3.1 PDB: 1h2o_A 2lpx_A Back     alignment and structure
>4a8u_A Major pollen allergen BET V 1-J; PR-10 protein; 1.16A {Betula pendula} PDB: 4a8v_A* 4a87_A* 4a81_A* 4a80_A* 4a83_A* 4a86_A* 4a85_A* 4a88_A 4a8g_A* 1b6f_A 1btv_A 1bv1_A 1fsk_A 4a84_A* 1llt_A 1fm4_A* 3k78_A 1qmr_A Back     alignment and structure
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens} Back     alignment and structure
>2flh_A Cytokinin-specific binding protein; zeatin, pathogenesis-related proteins, multiple- ligand binding, plant protein; HET: ZEA; 1.20A {Vigna radiata} PDB: 3c0v_A* Back     alignment and structure
>2i9y_A Major latex protein-like protein 28 or MLP-like protein 28; AT1G70830, BET V1-like, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Back     alignment and structure
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2 Back     alignment and structure
>2wql_A Major allergen DAU C 1; pathogenesis-related protein, plant defense; HET: P4C; 2.70A {Daucus carota} PDB: 2bk0_A Back     alignment and structure
>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10 Back     alignment and structure
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens} Back     alignment and structure
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV} Back     alignment and structure
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A* Back     alignment and structure
>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10 Back     alignment and structure
>2vq5_A S-norcoclaurine synthase; lyase, S- norcoclaurine biosynthesis, dopamine, hydroxybenzaldehyde; HET: MSE LDP HBA; 2.09A {Thalictrum flavum} PDB: 2vne_A* Back     alignment and structure
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2 Back     alignment and structure
>3ie5_A Phenolic oxidative coupling protein HYP-1; hypericin, ST JOHN'S WORT, depression, allergy, PR-10 protein, cytokinin, plant hormones; HET: PGE PG4 PE8 1PE; 1.69A {Hypericum perforatum} SCOP: d.129.3.0 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query573
d1em2a_214 Lipid transport domain of Mln64 {Human (Homo sapie 94.37
d1e09a_159 Major tree pollen allergen {Sweet cherry (Prunus a 94.35
d1icxa_155 Plant pathogenesis-related protein PR10 {Yellow lu 92.97
d1fm4a_159 Major tree pollen allergen {European white birch ( 92.93
d1xdfa1157 Plant pathogenesis-related protein PR10 {Yellow lu 92.88
d2bk0a1153 Major allergen api g 1 {Celery (Apium graveolens) 92.76
d1txca1147 Plant pathogenesis-related protein PR10 {Jicama (P 92.02
d2pcsa1147 Hypothetical protein GKP20 {Geobacillus kaustophil 90.2
d1jssa_199 Cholesterol-regulated Start protein 4 (Stard4). {M 89.34
d1t17a_148 Hypothetical protein CC1736 {Caulobacter crescentu 88.36
d1t77a2110 Lipopolysaccharide-responsive and beige-like ancho 84.07
>d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Lipid transport domain of Mln64
species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.37  E-value=0.59  Score=41.80  Aligned_cols=152  Identities=13%  Similarity=0.029  Sum_probs=80.5

Q ss_pred             EEEEeEEecCHHHHHhhhccCCchHHHHHHHHHcCCcceEeccccccCC-CCceEEEEEEeeecccCCCceee-eeEEEE
Q 008222          215 KVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYE-FGYSRDLSFQHPIKVYFGAKFGS-CKETQK  292 (573)
Q Consensus       215 ~l~e~~fpisv~~lF~lLF~D~s~~Fl~~f~~~rg~tdi~~spW~~~~~-~~~tR~vsYt~PL~~p~GPKst~-c~etQ~  292 (573)
                      .-++.++++|++++|..++.|-  .       .+...|-.+..+...+. +..+. +.|..-.....+|-+.+ ++..++
T Consensus        54 ~k~~~~i~~~~~~v~~~~~~d~--e-------~~~~Wd~~~~~~~ile~~~~~~~-i~~~~~~~~~~~~vs~RD~v~~~~  123 (214)
T d1em2a_          54 FILKTFLPCPAELVYQEVILQP--E-------RMVLWNKTVTACQILQRVEDNTL-ISYDVSAGAAGGVVSPRDFVNVRR  123 (214)
T ss_dssp             EEEEEEESSCHHHHHHHTTTCH--H-------HHTTTCTTEEEEEEEEEETTTEE-EEEEEECCBTTTTBCCEEEEEEEE
T ss_pred             EEEEEEEeCCHHHHHHHHHhCh--H-------HHHHHHHHHhheEEEEEcCCCce-EEEEEecccCCCCCCCcEEEEEEE
Confidence            3567899999999998666542  1       22333333333332221 12222 33332221112332332 333344


Q ss_pred             EEeeeCCeEEEEEeeecCCCCCC-CeeEEE---EEEEEEecCCCCCCceEEEEEEEEEEcccccchhhhhhchHHHHHHH
Q 008222          293 FRVYRNSHLVIETSQEVHDVPYG-DYFRVE---GLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDV  368 (573)
Q Consensus       293 i~~~~~~~yVVet~t~t~DVPYG-DsF~Ve---~R~~It~~~~~s~~~CrL~V~~~V~F~KsT~~Ks~IEkst~~g~ke~  368 (573)
                      +...++..+++......++.|-- ++-+++   ..|+|+..+. .+++|++...+.++..++ +=+.++.....+.+-+.
T Consensus       124 ~~~~~~~~~~~~~s~~~~~~p~~~~~vR~~~~~~~~~i~p~~~-~~~~t~vt~~~~~Dp~G~-iP~~lvn~~~~~~~~~~  201 (214)
T d1em2a_         124 IERRRDRYLSSGIATSHSAKPPTHKYVRGENGPGGMIVLKSAS-NPRVCTFVWILNTDLKGR-LPRYLIHQSLAATMFEF  201 (214)
T ss_dssp             EEECSSEEEEEEEECCCTTSCCCTTSEECEECSEEEEEEECSS-CTTCEEEEEEECEECCSS-SCHHHHHHHHHHHHHHH
T ss_pred             EEEcCCcEEEEEEeeccccccCCCCeEEEEEEeeeEEEEECCC-CCCeEEEEEEEEeCCCCC-CCHHHHHHHHHHhHHHH
Confidence            43333444455555555565544 443433   7899998653 346899999999998664 34555655555666665


Q ss_pred             HHHHHHHHHH
Q 008222          369 YAMWIGMAHD  378 (573)
Q Consensus       369 ~~~~v~~l~e  378 (573)
                      ++.+-+.+++
T Consensus       202 ~~~Lrk~~~k  211 (214)
T d1em2a_         202 AFHLRQRISE  211 (214)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5555444443



>d1e09a_ d.129.3.1 (A:) Major tree pollen allergen {Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]} Back     information, alignment and structure
>d1icxa_ d.129.3.1 (A:) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]} Back     information, alignment and structure
>d1fm4a_ d.129.3.1 (A:) Major tree pollen allergen {European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]} Back     information, alignment and structure
>d1xdfa1 d.129.3.1 (A:1-157) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]} Back     information, alignment and structure
>d2bk0a1 d.129.3.1 (A:2-154) Major allergen api g 1 {Celery (Apium graveolens) [TaxId: 4045]} Back     information, alignment and structure
>d1txca1 d.129.3.1 (A:1-147) Plant pathogenesis-related protein PR10 {Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]} Back     information, alignment and structure
>d2pcsa1 d.129.3.10 (A:1-147) Hypothetical protein GKP20 {Geobacillus kaustophilus [TaxId: 1462]} Back     information, alignment and structure
>d1jssa_ d.129.3.2 (A:) Cholesterol-regulated Start protein 4 (Stard4). {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1t17a_ d.129.3.6 (A:) Hypothetical protein CC1736 {Caulobacter crescentus [TaxId: 155892]} Back     information, alignment and structure
>d1t77a2 b.55.1.6 (A:2076-2185) Lipopolysaccharide-responsive and beige-like anchor protein LRBA {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure