Citrus Sinensis ID: 008257

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570--
Protein Sequence
MTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHIDKIPNFSGIFPNMG
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHHHccccHHHHHHHccccHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHccHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHccccHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHccccHHHHHHHHHcccccHHHHHHHHHHHHccccccHHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHccccHHHHHHcccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccEEccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccEEEEcccccEEcccHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHccccHHHHHHHHHHHHHHccccccHHHHHHHHccccHHHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHHcccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHccccccccccccccccccHHHHccccccccccccEEEEcccEccccccEEEEEcccHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccccc
Coil and Loop (DISEMBL)
mtssksenLLTVEKAEKTLANLEKCENNVRQMAengrlqplltqilegpqeTKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVlihagilpplvkdlftvgsnhlpmrLKEVSATILANVVnsghdfdsitvgpdnqtlvSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAelperdlgltrQMLDEGAFGLIFSRVKsiqlgetrgsrfvtpFLEGLLSVLARVTFvlsdepdaIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLslesknltklpelppsgfcasifpcfskqpvitglcrlhrglcslketfCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDiayevsgdpnvstALVDAFQHADYRTRQIAERALKHidkipnfsgifpnmg
Flexible Loop (DISEMBL)
mtssksenlltvEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDdiayevsgdpnVSTALVDAFQHADYRTRQIAERALKhidkipnfsgifpnmg
Low Complexity Region (SEG)
MTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQvlvgltsspttvlsvvsAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHIDKIPNFSGIFPNMG
Disordered region (IsUnstruct)
**************************************QPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSL****LTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHIDKIPNFSGI*****
Disordered Region (DISOPRED)
***********VEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGH*L**ALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKS**********FVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLES*********PPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYE*SGDPNVSTALVDAFQH****TRQIAERALKHIDKIPNFS*IFPNM*
Disordered Region (DISEMBL)
********LLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHIDKIPNFSGIFPNMG
Disordered Region (DISPRO)
******ENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHIDKIPNFSGI*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTSSKSENLLTxxxxxxxxxxxxxxxxxxxxxxxxGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHIDKIPNFSGIFPNMG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	572	2.2.26 [Sep-21-2011]
Q9SFX2	811	U-box domain-containing p	yes	no	1.0	0.705	0.667	0.0
Q9LM76	801	U-box domain-containing p	no	no	0.987	0.705	0.659	0.0
Q9CAA7	1033	Putative U-box domain-con	no	no	0.965	0.534	0.360	2e-99
Q503E9	536	Importin subunit alpha-6	yes	no	0.260	0.277	0.284	1e-06
Q2U5T5	578	Vacuolar protein 8 OS=Asp	yes	no	0.391	0.387	0.246	5e-06
Q6CX49	579	Vacuolar protein 8 OS=Klu	yes	no	0.351	0.347	0.240	6e-06
O15131	536	Importin subunit alpha-6	yes	no	0.263	0.281	0.269	6e-06
Q4WVW4	578	Vacuolar protein 8 OS=Neo	yes	no	0.389	0.385	0.258	7e-06
Q0V7M0	536	Importin subunit alpha-7	no	no	0.201	0.214	0.268	2e-05
O35345	536	Importin subunit alpha-7	yes	no	0.201	0.214	0.268	3e-05

>sp|Q9SFX2|PUB43_ARATH U-box domain-containing protein 43 OS=Arabidopsis thaliana GN=PUB43 PE=2 SV=1

 Score =  745 bits (1924), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/574 (66%), Positives = 472/574 (82%), Gaps = 2/574 (0%)

Query: 1   MTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFL 60
           +TSSKSEN+ TVEKA+KTL NLE+ E NVRQMA NGRLQPLL ++LEG  ETK+S+A +L
Sbjct: 238 LTSSKSENVSTVEKADKTLTNLERSEENVRQMAINGRLQPLLAKLLEGSPETKVSMAFYL 297

Query: 61  GDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILP 120
           G LALN+DVKV+VA+TVGS LI++M++ +M  REAAL ALN ISS E SAK+LI+ GILP
Sbjct: 298 GVLALNNDVKVIVAQTVGSSLIDLMRTRDMSQREAALGALNNISSFEGSAKLLINTGILP 357

Query: 121 PLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHL 180
           PL+KDLF VG N LP+RLKEVSATILAN+VN G+DFD + VGP +QTLVSE+IV NLL L
Sbjct: 358 PLIKDLFYVGPNQLPIRLKEVSATILANIVNIGYDFDKVPVGPHHQTLVSEEIVENLLQL 417

Query: 181 ISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQND-LRLASIE 239
            SNTGP I+ KLL VLVGLTS P +V++VVSAI++S A ISLVQFVE  +ND LRLASI+
Sbjct: 418 TSNTGPEIQGKLLAVLVGLTSCPNSVINVVSAIRNSAAIISLVQFVEIHENDDLRLASIK 477

Query: 240 LIQNLSPHMGHELADALRGAVGQLGSLIRVISENV-GISKEQAAAVGLLAELPERDLGLT 298
           L+ N+SPHM  ELA+ALR  VGQLGSL+ +ISEN   I++EQAAA GLLAELPERDL LT
Sbjct: 478 LLHNISPHMSEELANALRSTVGQLGSLVSIISENTPTITEEQAAAAGLLAELPERDLVLT 537

Query: 299 RQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCE 358
            ++L EGAF  I S++  I+ GE RG RF   FLEGL+S+LAR+TF L+ E DA   CCE
Sbjct: 538 MRLLREGAFEKIISKIVGIRQGEIRGIRFERTFLEGLVSILARITFALTKETDATLFCCE 597

Query: 359 HNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQP 418
            NL +LF++LLQSN  D +Q  SATALENLSLESKNLTK+PELPP  +C SIF C SK P
Sbjct: 598 KNLPSLFLDLLQSNSQDNIQRASATALENLSLESKNLTKIPELPPPTYCVSIFSCLSKPP 657

Query: 419 VITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIE 478
           V+ G+C++H+G+CS++E+FCL+EG AV+KL+ LLDH N+KVV  +LAALST+++DG+D+ 
Sbjct: 658 VVLGICKIHQGICSVRESFCLVEGQAVDKLVDLLDHENDKVVGPALAALSTLLEDGLDVV 717

Query: 479 QGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVD 538
           QGV ++ EA GI PIL+VLLE RTENL+ RAVW+VERILR ++IA EV  + NV+ ALVD
Sbjct: 718 QGVRLIDEADGITPILNVLLENRTENLRIRAVWMVERILRIEEIAREVGEEQNVTAALVD 777

Query: 539 AFQHADYRTRQIAERALKHIDKIPNFSGIFPNMG 572
           AFQ+AD+RTRQIAE+AL+HIDKIPNFSGIF N+G
Sbjct: 778 AFQNADFRTRQIAEKALRHIDKIPNFSGIFTNIG 811

Functions as an E3 ubiquitin ligase.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q9LM76|PUB44_ARATH U-box domain-containing protein 44 OS=Arabidopsis thaliana GN=PUB44 PE=1 SV=1

 Score =  712 bits (1839), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/573 (65%), Positives = 463/573 (80%), Gaps = 8/573 (1%)

Query: 1   MTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFL 60
           +TSS SEN+  VEKA++TL N+E+ E  VRQMA  GRLQPLL ++LEG  ETKLS+A+FL
Sbjct: 236 LTSSNSENVSIVEKADRTLENMERSEEIVRQMASYGRLQPLLGKLLEGSPETKLSMASFL 295

Query: 61  GDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILP 120
           G+L LN+DVKVLVA+TVGS L+++M+SG+M  REAALKALN+ISS E SAKVLI  GILP
Sbjct: 296 GELPLNNDVKVLVAQTVGSSLVDLMRSGDMPQREAALKALNKISSFEGSAKVLISKGILP 355

Query: 121 PLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHL 180
           PL+KDLF VG N+LP+RLKEVSATILAN+VN G+DFD         TLVSE+ V NLLHL
Sbjct: 356 PLIKDLFYVGPNNLPIRLKEVSATILANIVNIGYDFD-------KATLVSENRVENLLHL 408

Query: 181 ISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQND-LRLASIE 239
           ISNTGP I+CKLL+VLVGLTS P TV  VV AIK+SGA ISLVQF+E  +ND LRLASI+
Sbjct: 409 ISNTGPAIQCKLLEVLVGLTSCPKTVPKVVYAIKTSGAIISLVQFIEVRENDDLRLASIK 468

Query: 240 LIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTR 299
           L+ NLSP M  ELA AL G  GQLGSL+ +ISE   I++EQAAA GLLAELP+RDLGLT+
Sbjct: 469 LLHNLSPFMSEELAKALCGTAGQLGSLVAIISEKTPITEEQAAAAGLLAELPDRDLGLTQ 528

Query: 300 QMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEH 359
           +ML+ GAF  I S+V  I+ G+ +G RFV PFLEGL+ +LAR+TFV + E  AI  C EH
Sbjct: 529 EMLEVGAFEKIISKVFGIRQGDIKGMRFVNPFLEGLVRILARITFVFNKEARAINFCREH 588

Query: 360 NLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPV 419
           ++A+LF+ LLQSNG D +QMVSA ALENLSLES  LT++P+ PP  +C SIF C  K  V
Sbjct: 589 DVASLFLHLLQSNGQDNIQMVSAMALENLSLESIKLTRMPDPPPVNYCGSIFSCVRKPHV 648

Query: 420 ITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQ 479
           + GLC++H+G+CSL+ETFCL+EG AVEKL+ALLDH N KVVEA+LAALS++++DG+D+E+
Sbjct: 649 VNGLCKIHQGICSLRETFCLVEGGAVEKLVALLDHENVKVVEAALAALSSLLEDGLDVEK 708

Query: 480 GVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDA 539
           GV +L EA GI+ IL+VL E RTE L RRAVW+VERILR +DIA EV+ + ++S ALVDA
Sbjct: 709 GVKILDEADGIRHILNVLRENRTERLTRRAVWMVERILRIEDIAREVAEEQSLSAALVDA 768

Query: 540 FQHADYRTRQIAERALKHIDKIPNFSGIFPNMG 572
           FQ+AD+RTRQIAE ALKHIDKIPNFS IFPN+ 
Sbjct: 769 FQNADFRTRQIAENALKHIDKIPNFSSIFPNIA 801

Functions as an E3 ubiquitin-protein ligase. Prevents premature senescence probably by targeting proteins involved in this process for degradation. Promotes the degradation of AAO3 and thus represses abscisic acid (ABA) biosynthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9CAA7|PUB42_ARATH Putative U-box domain-containing protein 42 OS=Arabidopsis thaliana GN=PUB42 PE=2 SV=1

 Score =  363 bits (933), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 202/561 (36%), Positives = 343/561 (61%), Gaps = 9/561 (1%)

Query: 13   EKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVL 72
            E +++ L NLEKC  N++QMAE+G L+PLL  + EG +ET++++AA+L ++ +  + K  
Sbjct: 470  ETSDQILRNLEKCPENIKQMAESGLLEPLLGHLAEGSEETQVAMAAYLVEIDIGHEKKTY 529

Query: 73   VARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSN 132
            VA      LI +++S N+ AR AA KAL  IS   P+ K+L+  GI+  +V+++FT    
Sbjct: 530  VAEKACPALIGLVQSENIDARRAAFKALAHISLYHPNNKILVEVGIIKIMVEEMFTKRVF 589

Query: 133  HLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGP-TIECK 191
               M  +  +ATILAN++ SG + ++  V     TL S+  V+N++H++ N+ P  +   
Sbjct: 590  SDLMNSRNEAATILANILESGLEHETFEVNTHGHTLGSDYFVYNIIHMLKNSSPDDLNID 649

Query: 192  LLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHE 251
            L+++L+ L+ SP  + ++VS IK + A+ ++++ +  P ++L + +++L+  L+P++GH 
Sbjct: 650  LIRILLSLSKSPRAMATIVSVIKETDASFAMIELINNPHDELGVGALKLLIALTPYIGHT 709

Query: 252  LADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIF 311
            L++ L    GQ  +LI+   E   I+++ A +  LLA+LP ++L L   +++E     I 
Sbjct: 710  LSERLCKTRGQPENLIQCPVEANQITEKHAVSAKLLAKLPHQNLTLNLALVNESIVSEIL 769

Query: 312  SRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQS 371
              +  IQ    R SR+ T FLEGL+ +L R T  L  EP  + L   H+L ++F++LL  
Sbjct: 770  HAIHLIQRSGARTSRYATDFLEGLVGILVRFTTTLY-EPQMMYLARNHDLTSVFVDLLMK 828

Query: 372  NGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASI-----FPCFSKQPVITGLCRL 426
               D+VQ +SAT LENLS  +  L++ P+   + F  S+     F   S +     +C +
Sbjct: 829  TSSDEVQRLSATGLENLSSTTMTLSRPPQPRSTKFMGSLSMPRSFSLRSSKKKQIEICAI 888

Query: 427  HRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCE 486
            HRG+CS K TFCL+E +A+ KL+A L     +VVE++LAA+ T++DD V++E+ + +L E
Sbjct: 889  HRGVCSAKNTFCLVEANAITKLLACLQSDKVEVVESALAAICTLLDDKVEVEKSLSMLSE 948

Query: 487  AQGIKPILDVLLEKRTENLQRRAVWVVER-ILR-TDDIAYEVSGDPNVSTALVDAFQHAD 544
               ++ IL+ + E + E+L ++A W++++ I+R  D  A E+S D  +S  LV AF   D
Sbjct: 949  MNAVQLILNAVKEHKKESLLQKAFWMIDKFIIRGGDKYASEISQDRMLSGMLVSAFHRGD 1008

Query: 545  YRTRQIAERALKHIDKIPNFS 565
              TRQ+AE  L+ +DK+P+FS
Sbjct: 1009 GNTRQMAENILRRLDKMPSFS 1029

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q503E9|IMA5_DANRE Importin subunit alpha-6 OS=Danio rerio GN=kpna5 PE=2 SV=2

 Score = 55.1 bits (131), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 78/169 (46%), Gaps = 20/169 (11%)

Query: 402 PPSGFCASIFPC--------FSKQPVI-----TGLCRLHRGLCSLKETFCLLEGHAVEKL 448
           PP  F A + PC        FS  P +       L  L  G     +T  +++     +L
Sbjct: 243 PPPDF-AKVSPCLSVLSRLLFSSDPDVLADACWALSYLSDGPNDKIQT--VIDSGVCRRL 299

Query: 449 IALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRR 508
           + LL H++ KVV  +L A+  ++  G DI+  V++ C A    P L  LL    E++++ 
Sbjct: 300 VELLMHSDYKVVSPALRAVGNIVT-GDDIQTQVILNCSA---LPCLLHLLSSPKESIKKE 355

Query: 509 AVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKH 557
           A W V  I   +    +   D NV   L++  Q A++RTR+ A  A+ +
Sbjct: 356 ACWTVSNITAGNRAQIQAVIDSNVFPVLIEILQKAEFRTRKEAAWAITN 404

Functions in nuclear protein import.

Danio rerio (taxid: 7955)

>sp|Q2U5T5|VAC8_ASPOR Vacuolar protein 8 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=vac8 PE=3 SV=1

 Score = 53.1 bits (126), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 115/247 (46%), Gaps = 23/247 (9%)

Query: 5   KSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLA 64
           +S ++     A   L NL    +N   +   G L PL+ Q++    E + +    + +LA
Sbjct: 116 QSSDIEVQRAASAALGNLAVNADNKVLIVALGGLAPLIRQMMSPNVEVQCNAVGCITNLA 175

Query: 65  LNSDVKVLVARTVG-SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLV 123
            + D K  +AR+     LI + KS +M+ +  A  AL  ++  + + + L++AG +P LV
Sbjct: 176 THEDNKAKIARSGALGPLIRLAKSKDMRVQRNATGALLNMTHSDDNRQQLVNAGAIPVLV 235

Query: 124 KDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSED---IVHNLLHL 180
           + L +   +     ++    T L+N          I V   N+  +++    +V +L+HL
Sbjct: 236 QLLSSSDVD-----VQYYCTTALSN----------IAVDASNRKRLAQTESRLVQSLVHL 280

Query: 181 ISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIEL 240
           + ++ P ++C+    L  L S     L +V A K     + L+Q    P   L L+++  
Sbjct: 281 MDSSTPKVQCQAALALRNLASDEKYQLEIVRA-KGLPPLLRLLQSSYLP---LILSAVAC 336

Query: 241 IQNLSPH 247
           I+N+S H
Sbjct: 337 IRNISIH 343

Functions in both vacuole inheritance and protein targeting from the cytoplasm to vacuole.

Aspergillus oryzae (strain ATCC 42149 / RIB 40) (taxid: 510516)

>sp|Q6CX49|VAC8_KLULA Vacuolar protein 8 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=VAC8 PE=3 SV=3

 Score = 53.1 bits (126), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 110/245 (44%), Gaps = 44/245 (17%)

Query: 38  LQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVG-SCLINIMKSGNMQAREAA 96
           L+P+L  +     + +++  A LG+LA+N++ K+L+    G   LI  MKS N++ +  A
Sbjct: 89  LEPILMLLTNPDPQIRIASCAALGNLAVNNENKLLIVEMGGLEPLIEQMKSDNVEVQCNA 148

Query: 97  LKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHD- 155
           +  +  +++ + +   +  +G L PL K      SN   +R++  +   L N+ +SG + 
Sbjct: 149 VGCITNLATQDDNKIEIAQSGALVPLTK--LARSSN---IRVQRNATGALLNMTHSGENR 203

Query: 156 ------------------------------FDSITVGPDNQTLVSE---DIVHNLLHLIS 182
                                           +I V   N+  +S+    +V  L+ L++
Sbjct: 204 KELVDAGAVPVLVSLLSSMDADVQYYCTTALSNIAVDESNRRYLSKHAPKLVTKLVSLMN 263

Query: 183 NTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQ 242
           +T P ++C+    L  L S     L +V A    G    LVQ +++    L LAS+  I+
Sbjct: 264 STSPRVKCQATLALRNLASDTNYQLEIVRA----GGLPDLVQLIQSDSLPLVLASVACIR 319

Query: 243 NLSPH 247
           N+S H
Sbjct: 320 NISIH 324

Functions in both vacuole inheritance and protein targeting from the cytoplasm to vacuole.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

>sp|O15131|IMA5_HUMAN Importin subunit alpha-6 OS=Homo sapiens GN=KPNA5 PE=1 SV=2

 Score = 53.1 bits (126), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 16/167 (9%)

Query: 402 PPSGFCASIFPC--------FSKQP-VITGLCRLHRGLCS--LKETFCLLEGHAVEKLIA 450
           PP  F + + PC        FS  P V+  +C     L      +   +++     +L+ 
Sbjct: 243 PPPNF-SKVSPCLNVLSRLLFSSDPDVLADVCWALSYLSDGPNDKIQAVIDSGVCRRLVE 301

Query: 451 LLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAV 510
           LL H + KVV  +L A+  ++  G DI+  V++ C A    P L  LL    E++++ A 
Sbjct: 302 LLMHNDYKVVSPALRAVGNIVT-GDDIQTQVILNCSA---LPCLLHLLSSPKESIRKEAC 357

Query: 511 WVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKH 557
           W V  I   +    +   D N+   L++  Q A++RTR+ A  A+ +
Sbjct: 358 WTVSNITAGNRAQIQAVIDANIFPVLIEILQKAEFRTRKEAAWAITN 404

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus. Mediates nuclear import of STAT1 homodimers and STAT1/STAT2 heterodimers by recognizing non-classical NLSs of STAT1 and STAT2 through ARM repeats 8-9. Recognizes influenza A virus nucleoprotein through ARM repeat 7-9 In vitro, mediates the nuclear import of human cytomegalovirus UL84 by recognizing a non-classical NLS.

Homo sapiens (taxid: 9606)

>sp|Q4WVW4|VAC8_ASPFU Vacuolar protein 8 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=vac8 PE=3 SV=1

 Score = 52.8 bits (125), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 117/248 (47%), Gaps = 25/248 (10%)

Query: 5   KSENLLTVEKAEKTLANLE-KCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDL 63
           +S ++     A   L NL    EN V  +A  G L PL+ Q++    E + +    + +L
Sbjct: 116 QSSDIEVQRAASAALGNLAVNAENKVLIVALGG-LTPLIRQMMSPNVEVQCNAVGCITNL 174

Query: 64  ALNSDVKVLVARTVG-SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPL 122
           A + D K  +AR+     LI + KS +M+ +  A  AL  ++  + + + L++AG +P L
Sbjct: 175 ATHEDNKAKIARSGALGPLIRLAKSKDMRVQRNATGALLNMTHSDDNRQQLVNAGAIPVL 234

Query: 123 VKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSED---IVHNLLH 179
           V+ L +   +     ++    T L+N          I V   N+  +++    +V +L+H
Sbjct: 235 VQLLSSPDVD-----VQYYCTTALSN----------IAVDASNRKRLAQTESRLVQSLVH 279

Query: 180 LISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIE 239
           L+ ++ P ++C+    L  L S     L +V A K     + L+Q    P   L L+++ 
Sbjct: 280 LMDSSTPKVQCQAALALRNLASDEKYQLEIVRA-KGLPPLLRLLQSSYLP---LILSAVA 335

Query: 240 LIQNLSPH 247
            I+N+S H
Sbjct: 336 CIRNISIH 343

Functions in both vacuole inheritance and protein targeting from the cytoplasm to vacuole.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

>sp|Q0V7M0|IMA7_BOVIN Importin subunit alpha-7 OS=Bos taurus GN=KPNA6 PE=2 SV=1

 Score = 51.2 bits (121), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 4/119 (3%)

Query: 439 LLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLL 498
           +++     +L+ LL H + KV   +L A+  ++  G DI+  V++ C A    P L  LL
Sbjct: 290 VIDSGVCRRLVELLMHNDNKVASPALRAVGNIVT-GDDIQTQVILNCSA---LPCLLHLL 345

Query: 499 EKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKH 557
               E++++ A W +  I   +    +   D N+   L++  Q A++RTR+ A  A+ +
Sbjct: 346 SSSKESIRKEACWTISNITAGNRAQIQAVIDANIFPVLIEILQKAEFRTRKEAAWAITN 404

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Bos taurus (taxid: 9913)

>sp|O35345|IMA7_MOUSE Importin subunit alpha-7 OS=Mus musculus GN=Kpna6 PE=1 SV=2

 Score = 50.4 bits (119), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 4/119 (3%)

Query: 439 LLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLL 498
           +++     +L+ LL H + KV   +L A+  ++  G DI+  V++ C A    P L  LL
Sbjct: 290 VIDSGVCRRLVELLMHNDYKVASPALRAVGNIVT-GDDIQTQVILNCSA---LPCLLHLL 345

Query: 499 EKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKH 557
               E++++ A W +  I   +    +   D N+   L++  Q A++RTR+ A  A+ +
Sbjct: 346 SSSKESIRKEACWTISNITAGNRAQIQAVIDANIFPVLIEILQKAEFRTRKEAAWAITN 404

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	572
255539268	813	ubiquitin-protein ligase, putative [Rici	1.0	0.703	0.832	0.0
225457588	813	PREDICTED: U-box domain-containing prote	1.0	0.703	0.830	0.0
224108665	813	predicted protein [Populus trichocarpa]	1.0	0.703	0.839	0.0
356517280	814	PREDICTED: U-box domain-containing prote	1.0	0.702	0.818	0.0
356508594	813	PREDICTED: U-box domain-containing prote	1.0	0.703	0.823	0.0
224083336	817	predicted protein [Populus trichocarpa]	1.0	0.700	0.811	0.0
449452993	820	PREDICTED: U-box domain-containing prote	0.996	0.695	0.729	0.0
326501546	807	predicted protein [Hordeum vulgare subsp	1.0	0.708	0.690	0.0
414877836	810	TPA: hypothetical protein ZEAMMB73_52926	1.0	0.706	0.671	0.0
357160297	806	PREDICTED: U-box domain-containing prote	0.998	0.708	0.671	0.0

>gi|255539268|ref|XP_002510699.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223551400|gb|EEF52886.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  983 bits (2542), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/572 (83%), Positives = 526/572 (91%)

Query: 1   MTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFL 60
           MTSSKSEN++TVE AEKTL NLEKCENNVRQMAENGRLQPLL Q+LEGP ETKL +A++L
Sbjct: 242 MTSSKSENIITVEMAEKTLENLEKCENNVRQMAENGRLQPLLNQLLEGPPETKLVMASYL 301

Query: 61  GDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILP 120
           G+L LN+DVKV VART+GS LI+IM+SGN ++REAALKALNQISS EPSAKVLI AGILP
Sbjct: 302 GELVLNNDVKVHVARTIGSSLIDIMRSGNTKSREAALKALNQISSYEPSAKVLIEAGILP 361

Query: 121 PLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHL 180
           PLV+DLF VGSN LPMRLKEVSATILANVVNS ++FDS++VG D+QTLVSEDIVHNLLHL
Sbjct: 362 PLVEDLFKVGSNQLPMRLKEVSATILANVVNSDYEFDSVSVGADHQTLVSEDIVHNLLHL 421

Query: 181 ISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIEL 240
           ISNTGP IECKLLQVLVGLT+SP+TVL+VV+AIKSSGAT SLVQF+EAPQ DLR+ASIEL
Sbjct: 422 ISNTGPAIECKLLQVLVGLTNSPSTVLNVVAAIKSSGATTSLVQFIEAPQKDLRVASIEL 481

Query: 241 IQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQ 300
           +QNLSPHMG ELA+ALRG  GQLGSLI VISEN+GI+KEQA A+GLLAELPERDLGLTRQ
Sbjct: 482 LQNLSPHMGQELANALRGTAGQLGSLINVISENIGITKEQATAIGLLAELPERDLGLTRQ 541

Query: 301 MLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHN 360
           MLDEGAF +IFSRV  I+ GE RG+RFVTPFLEGL+ VLAR TFVL++EPDAIA C E+N
Sbjct: 542 MLDEGAFQVIFSRVVKIRQGEIRGTRFVTPFLEGLVRVLARATFVLAEEPDAIAFCRENN 601

Query: 361 LAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVI 420
           LAALFIELLQSNGLD VQMVSA  LENLS ESKNLTKLP   P GFCAS+FPCFSK PVI
Sbjct: 602 LAALFIELLQSNGLDNVQMVSAMVLENLSQESKNLTKLPHFSPPGFCASVFPCFSKPPVI 661

Query: 421 TGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQG 480
           TGLCRLHRG CSL++TFCLLEG AVEKL+ALLDHTNEKVVEA+LAA+ST++DDGVDIEQG
Sbjct: 662 TGLCRLHRGTCSLRDTFCLLEGQAVEKLVALLDHTNEKVVEAALAAISTLLDDGVDIEQG 721

Query: 481 VMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAF 540
           VMVLCE +G+KPILDVLLEKRTENL+RRAVW VER+LRTDDIAYEVSGDPNVSTALVDAF
Sbjct: 722 VMVLCEEEGVKPILDVLLEKRTENLRRRAVWAVERLLRTDDIAYEVSGDPNVSTALVDAF 781

Query: 541 QHADYRTRQIAERALKHIDKIPNFSGIFPNMG 572
           QHADYRTRQIAERALKH+DKIPNFSGIF NMG
Sbjct: 782 QHADYRTRQIAERALKHVDKIPNFSGIFANMG 813

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457588|ref|XP_002273221.1| PREDICTED: U-box domain-containing protein 43 [Vitis vinifera]

 Score =  979 bits (2532), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 475/572 (83%), Positives = 527/572 (92%)

Query: 1   MTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFL 60
           MTSSKSENLLTVEKA+KTL NLE CENN+RQMAENGRL PLLTQILEGP ETKLS+A +L
Sbjct: 242 MTSSKSENLLTVEKADKTLENLEMCENNIRQMAENGRLHPLLTQILEGPPETKLSMATYL 301

Query: 61  GDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILP 120
           G+L LN+D++V VARTVG  LIN+MKSGN+Q REAALKALNQISS + SA+VLI  GILP
Sbjct: 302 GELVLNNDMQVFVARTVGLALINMMKSGNLQLREAALKALNQISSFDASARVLIEEGILP 361

Query: 121 PLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHL 180
           PL+KDL TVG+N LPMRLKEVSATILANVV SG+DFDSI VG D+QTLVSEDIVHNLLHL
Sbjct: 362 PLIKDLLTVGTNQLPMRLKEVSATILANVVQSGYDFDSIPVGSDHQTLVSEDIVHNLLHL 421

Query: 181 ISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIEL 240
           ISNTGP IECKLLQVLVGLT+SPT VL VV+AIKSSGATISLVQF+EAPQ +LRLASI+L
Sbjct: 422 ISNTGPAIECKLLQVLVGLTNSPTAVLDVVAAIKSSGATISLVQFIEAPQKELRLASIKL 481

Query: 241 IQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQ 300
           +QNLSPHMG ELADALRG  GQLGSLIRVISEN+GI++EQA A GLLA+LPERDLGLTRQ
Sbjct: 482 LQNLSPHMGQELADALRGTAGQLGSLIRVISENIGITEEQAVAAGLLADLPERDLGLTRQ 541

Query: 301 MLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHN 360
           MLDEGAF ++FSRV  I+ GETRG+RF+TP+LEGL+ VLARVTFVL+DEPDAIALC E+N
Sbjct: 542 MLDEGAFQMVFSRVVRIRQGETRGNRFMTPYLEGLVRVLARVTFVLADEPDAIALCREYN 601

Query: 361 LAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVI 420
           LAA+F ELLQSNGLDKVQMVSA +LENLS ESKNLTKLPELP  GFCASIFPC SKQPVI
Sbjct: 602 LAAVFTELLQSNGLDKVQMVSAMSLENLSQESKNLTKLPELPAPGFCASIFPCLSKQPVI 661

Query: 421 TGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQG 480
           TGLCRLHRG CSLK++FCLLEG AVEKL+ALLDH NE+VVEA+LAA+ST++DDGVDIEQG
Sbjct: 662 TGLCRLHRGTCSLKDSFCLLEGQAVEKLVALLDHQNEQVVEAALAAISTLLDDGVDIEQG 721

Query: 481 VMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAF 540
           V +LCEA+GIKPILDVLLEKRTENL+RRAVW VERILRTD+IAYE+SGDPNVSTALVDAF
Sbjct: 722 VNILCEAEGIKPILDVLLEKRTENLRRRAVWAVERILRTDEIAYEISGDPNVSTALVDAF 781

Query: 541 QHADYRTRQIAERALKHIDKIPNFSGIFPNMG 572
           QHADYRTRQIAERALKH+DKIPNFSGIFPN+G
Sbjct: 782 QHADYRTRQIAERALKHVDKIPNFSGIFPNIG 813

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108665|ref|XP_002333360.1| predicted protein [Populus trichocarpa] gi|222836311|gb|EEE74732.1| predicted protein [Populus trichocarpa]

 Score =  973 bits (2515), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/572 (83%), Positives = 526/572 (91%)

Query: 1   MTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFL 60
           MTSSKSENL TVEKA+KTL NLEKCENNVRQMAENGRL+PLL QILEGP ETKLS+A++L
Sbjct: 242 MTSSKSENLSTVEKADKTLENLEKCENNVRQMAENGRLKPLLNQILEGPPETKLSMASYL 301

Query: 61  GDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILP 120
           G+L LN+DVKV VAR VGS LINIM+SGN+Q+REAALKALNQISS E SAKVLI AGILP
Sbjct: 302 GELVLNNDVKVHVARAVGSSLINIMRSGNVQSREAALKALNQISSYEASAKVLIEAGILP 361

Query: 121 PLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHL 180
           PLVKDLFTVGSN LPMRLKEVSATIL+NVVNSG+DFD I VGPD+QTLVSEDIV NLLHL
Sbjct: 362 PLVKDLFTVGSNQLPMRLKEVSATILSNVVNSGNDFDLIPVGPDHQTLVSEDIVQNLLHL 421

Query: 181 ISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIEL 240
           ISNTGP IECKLLQVLVGLTSSP+TVL+VV+AIKSSGA ISLVQF+EAPQ DLR+ASI+L
Sbjct: 422 ISNTGPAIECKLLQVLVGLTSSPSTVLNVVAAIKSSGAIISLVQFIEAPQRDLRVASIKL 481

Query: 241 IQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQ 300
           +QN+SPHMG ELADALRG VGQLGSL +V++ENVGI++EQAAAVGLLAELPERDLGLTRQ
Sbjct: 482 LQNVSPHMGEELADALRGTVGQLGSLFKVVAENVGITEEQAAAVGLLAELPERDLGLTRQ 541

Query: 301 MLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHN 360
           MLDE AF LI S V  I+ GE RG+RF+TPFLEGL+ VLARVTFVL++EPDAI L  EHN
Sbjct: 542 MLDESAFPLIISIVVKIRQGEIRGARFMTPFLEGLVRVLARVTFVLAEEPDAINLSREHN 601

Query: 361 LAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVI 420
           LAALFIELLQSNGLD VQMVSA ALENLS ESKNLT+LPELPP  FCASIF C SKQPVI
Sbjct: 602 LAALFIELLQSNGLDNVQMVSAMALENLSQESKNLTRLPELPPPAFCASIFSCLSKQPVI 661

Query: 421 TGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQG 480
           TGLCRLHRG CSLK++FCLLEG AVEKL+ALLDHTNEKVVEA+LAA+ST++DDGV IEQG
Sbjct: 662 TGLCRLHRGTCSLKDSFCLLEGQAVEKLVALLDHTNEKVVEAALAAISTLLDDGVAIEQG 721

Query: 481 VMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAF 540
           V VLC A+GI+PILDVLLEKRTENL+RRAVW VER+LRT+DIAYEVSGDPNVSTALVDAF
Sbjct: 722 VAVLCAAEGIRPILDVLLEKRTENLRRRAVWAVERLLRTEDIAYEVSGDPNVSTALVDAF 781

Query: 541 QHADYRTRQIAERALKHIDKIPNFSGIFPNMG 572
           QHADYRTRQIAERALKH+DKIPNFSGIFPNMG
Sbjct: 782 QHADYRTRQIAERALKHVDKIPNFSGIFPNMG 813

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517280|ref|XP_003527316.1| PREDICTED: U-box domain-containing protein 43-like [Glycine max]

 Score =  959 bits (2478), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/572 (81%), Positives = 523/572 (91%)

Query: 1   MTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFL 60
           MTSSKSE+LLTVEKA+KTL NLEKCE+NVRQMAENGRLQPLLTQ+LEGP ETKLS+A +L
Sbjct: 243 MTSSKSEDLLTVEKADKTLENLEKCESNVRQMAENGRLQPLLTQLLEGPPETKLSMATYL 302

Query: 61  GDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILP 120
           G+L LN+DVKVLVA TVGS LINIMKSGNMQ+REAAL+ALNQISSC PSAK+LI AGIL 
Sbjct: 303 GELVLNNDVKVLVAGTVGSSLINIMKSGNMQSREAALRALNQISSCYPSAKILIEAGILS 362

Query: 121 PLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHL 180
           PLV DLF VG N LP RLKE+SATILA+VVNSG DF SI  GPD+QTLVSEDIV NLLHL
Sbjct: 363 PLVNDLFAVGPNLLPTRLKEISATILASVVNSGEDFYSIPFGPDHQTLVSEDIVRNLLHL 422

Query: 181 ISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIEL 240
           ISNTGP IECKLLQVLVGLTS PTTVLSVV+AIKSSGATISLVQF+EAPQ DLR+ASI+L
Sbjct: 423 ISNTGPAIECKLLQVLVGLTSFPTTVLSVVAAIKSSGATISLVQFIEAPQKDLRVASIKL 482

Query: 241 IQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQ 300
           +QNLSPHMG ELADALRG+VGQLGSLI+VI+EN GI++EQAAAVGLLA+LPERDLGLTRQ
Sbjct: 483 LQNLSPHMGQELADALRGSVGQLGSLIKVIAENTGITEEQAAAVGLLADLPERDLGLTRQ 542

Query: 301 MLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHN 360
           +LDEGAF ++ SRV +I+ GE RG+RFVTPFLEGL+ ++ARVT+VL++EPDAIALC +HN
Sbjct: 543 LLDEGAFVMVISRVIAIRQGEIRGTRFVTPFLEGLVKIVARVTYVLAEEPDAIALCRDHN 602

Query: 361 LAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVI 420
           LAALFI+LLQSNGLD VQMVSATALENLS ESKNLT+LPE+P  GFCAS+F CFSK+PVI
Sbjct: 603 LAALFIDLLQSNGLDNVQMVSATALENLSQESKNLTRLPEMPLPGFCASVFSCFSKKPVI 662

Query: 421 TGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQG 480
           TG CRLHRG+CSLKETFCL EG AV KL+ LLDHTN  VVEA+LAALST+I+DGVDIEQG
Sbjct: 663 TGSCRLHRGICSLKETFCLYEGQAVLKLVGLLDHTNVNVVEAALAALSTLIEDGVDIEQG 722

Query: 481 VMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAF 540
           V +LCEA+G+KPILDVLLEKRT+ L+RRAVW VER+LRTDDIAYEVSGD NVSTALVDAF
Sbjct: 723 VAILCEAEGVKPILDVLLEKRTDTLRRRAVWAVERLLRTDDIAYEVSGDQNVSTALVDAF 782

Query: 541 QHADYRTRQIAERALKHIDKIPNFSGIFPNMG 572
           QH DYRTRQ AERALKH+DKIPNFSGIFPNMG
Sbjct: 783 QHGDYRTRQTAERALKHVDKIPNFSGIFPNMG 814

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508594|ref|XP_003523040.1| PREDICTED: U-box domain-containing protein 43-like [Glycine max]

 Score =  957 bits (2475), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 471/572 (82%), Positives = 525/572 (91%)

Query: 1   MTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFL 60
           MTSSKSE+LLTVEKA+KTL NLEKCE+NVRQMAENGRLQPLLTQ+LEGP ETKLS+A +L
Sbjct: 242 MTSSKSEDLLTVEKADKTLENLEKCESNVRQMAENGRLQPLLTQLLEGPPETKLSMATYL 301

Query: 61  GDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILP 120
           G+L LN+DVKVLVA TVGS LINIMKSGNMQ+REAAL+ALNQISSC+PSAK+LI AGIL 
Sbjct: 302 GELVLNNDVKVLVAGTVGSSLINIMKSGNMQSREAALRALNQISSCDPSAKILIEAGILS 361

Query: 121 PLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHL 180
           PLV DLF VG N LP RLKE+SATILA+VVNSG DF SI  GPD+QTLVSEDIV NLLHL
Sbjct: 362 PLVNDLFAVGPNQLPTRLKEISATILASVVNSGEDFYSIPFGPDHQTLVSEDIVRNLLHL 421

Query: 181 ISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIEL 240
           ISNTGP IECKLLQVLVGLT SPTTVLSVV+AIKSSGATISLVQF+EAPQ DLR+ASI+L
Sbjct: 422 ISNTGPAIECKLLQVLVGLTISPTTVLSVVAAIKSSGATISLVQFIEAPQKDLRVASIKL 481

Query: 241 IQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQ 300
           +QNLSPHMG ELADALRG+VGQLGSLI+VISEN GI++EQAAAVGLLA+LPERDLGLTRQ
Sbjct: 482 LQNLSPHMGQELADALRGSVGQLGSLIKVISENTGITEEQAAAVGLLADLPERDLGLTRQ 541

Query: 301 MLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHN 360
           +LDEGAF ++ SRV +I+ GE RG+RF+TPFLEGL+ ++ARVT+VL++EPDAIALC +HN
Sbjct: 542 LLDEGAFVMVISRVIAIRQGEIRGTRFMTPFLEGLVKIVARVTYVLAEEPDAIALCRDHN 601

Query: 361 LAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVI 420
           LAALFI+LLQSNGLD VQMVSATALENLS ESKNLT+LPE+P  GFCAS+F CFSKQPVI
Sbjct: 602 LAALFIDLLQSNGLDNVQMVSATALENLSQESKNLTRLPEMPSLGFCASVFSCFSKQPVI 661

Query: 421 TGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQG 480
           TGLCRLHRG+CSLKETFCL EG AV KL+ LLDHTN  VVEA+LAAL+T+IDDGVDIEQG
Sbjct: 662 TGLCRLHRGICSLKETFCLYEGQAVLKLVGLLDHTNVIVVEAALAALATLIDDGVDIEQG 721

Query: 481 VMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAF 540
           V +LCEA+G+KPILDVLLEKRTE L+RRAVW VER+LRTDDIAYEVSGD NVSTALVDAF
Sbjct: 722 VAILCEAEGVKPILDVLLEKRTETLRRRAVWAVERLLRTDDIAYEVSGDQNVSTALVDAF 781

Query: 541 QHADYRTRQIAERALKHIDKIPNFSGIFPNMG 572
           QH DYRTRQ AERALKH+DKIPNFSGIFPNMG
Sbjct: 782 QHGDYRTRQTAERALKHVDKIPNFSGIFPNMG 813

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083336|ref|XP_002306986.1| predicted protein [Populus trichocarpa] gi|222856435|gb|EEE93982.1| predicted protein [Populus trichocarpa]

 Score =  951 bits (2458), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/572 (81%), Positives = 518/572 (90%)

Query: 1   MTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFL 60
           M SSKSENL TVEKA+KTL NLEKCENNVRQMAENGRL+PLL QILEGP ETKLS+A++L
Sbjct: 242 MISSKSENLSTVEKADKTLGNLEKCENNVRQMAENGRLRPLLNQILEGPPETKLSMASYL 301

Query: 61  GDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILP 120
           G+L +N+DVKVLVARTVGS LINIM+SG+MQ+REAALKALNQIS  E SAKVLI AGILP
Sbjct: 302 GELVMNNDVKVLVARTVGSSLINIMRSGDMQSREAALKALNQISFHEASAKVLIEAGILP 361

Query: 121 PLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHL 180
           PLVKDLFTVG+N LPMRLKEV+ATILANVVNSG DFD I VGPD+ +LVSED+VHNLLHL
Sbjct: 362 PLVKDLFTVGTNQLPMRLKEVAATILANVVNSGDDFDLIPVGPDHHSLVSEDMVHNLLHL 421

Query: 181 ISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIEL 240
           ISNTGP IECKLLQVLVGLTSS +TVL+VV+AIKSSGA  SLVQF+EAPQ DLR+ASI+L
Sbjct: 422 ISNTGPAIECKLLQVLVGLTSSSSTVLNVVAAIKSSGAINSLVQFIEAPQRDLRVASIKL 481

Query: 241 IQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQ 300
           +Q +SPHMG ELADAL G VGQLGSL +V++EN+GI++EQAAA+GLLAELPERDLGLTRQ
Sbjct: 482 LQKVSPHMGQELADALCGVVGQLGSLFKVVAENIGITEEQAAAIGLLAELPERDLGLTRQ 541

Query: 301 MLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHN 360
           MLDE +F LI SRV  IQ GE R +RF+TPF EGL+ VL+RVTFVL+DEPDAI L  EHN
Sbjct: 542 MLDESSFPLIISRVVKIQQGEIRSARFMTPFFEGLVRVLSRVTFVLADEPDAIKLAREHN 601

Query: 361 LAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVI 420
           LAALFI+LLQSNGLD VQMVSA ALENL+ ESKNLT+LPELPP   CASIF CFSKQPVI
Sbjct: 602 LAALFIQLLQSNGLDNVQMVSAMALENLAQESKNLTRLPELPPPNLCASIFSCFSKQPVI 661

Query: 421 TGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQG 480
           +G CRLH G CSLKETFCLLEG AVEKL+ALLDHTNEKVVEA+LAA+ST++DDGVDIEQG
Sbjct: 662 SGSCRLHGGTCSLKETFCLLEGQAVEKLVALLDHTNEKVVEAALAAISTLLDDGVDIEQG 721

Query: 481 VMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAF 540
           V VLCEA+G++PILDVLLEKRTENL+RRAVW  ER+LRTDDIAY+VSGDPNVSTALVDAF
Sbjct: 722 VAVLCEAEGVRPILDVLLEKRTENLRRRAVWAAERLLRTDDIAYDVSGDPNVSTALVDAF 781

Query: 541 QHADYRTRQIAERALKHIDKIPNFSGIFPNMG 572
           QHADYRTRQIAERALKH+DKIPNFSGI+PN G
Sbjct: 782 QHADYRTRQIAERALKHVDKIPNFSGIYPNTG 813

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452993|ref|XP_004144243.1| PREDICTED: U-box domain-containing protein 44-like [Cucumis sativus] gi|449489349|ref|XP_004158286.1| PREDICTED: U-box domain-containing protein 44-like [Cucumis sativus]

 Score =  828 bits (2139), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/574 (72%), Positives = 497/574 (86%), Gaps = 4/574 (0%)

Query: 1   MTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFL 60
           M+SSKSEN+ TVE A++TL NLE CENN+RQMAE GRL+PLLTQILEGP ETK S+AA L
Sbjct: 242 MSSSKSENISTVENADRTLENLEVCENNIRQMAEYGRLRPLLTQILEGPPETKQSMAAHL 301

Query: 61  GDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILP 120
           G+L LN+DVK+ VA+TVGS LINIM+SG+ Q++EAALKALNQISS + SA+VL+  GILP
Sbjct: 302 GELVLNNDVKLFVAQTVGSSLINIMRSGDKQSKEAALKALNQISSFDTSARVLVQEGILP 361

Query: 121 PLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQ-TLVSEDIVHNLLH 179
           PLVKDLFTV SN LPM+LKEVSATILANVV+SG DF+SI V P+NQ TLVSED +HNLL 
Sbjct: 362 PLVKDLFTVSSNQLPMKLKEVSATILANVVSSGCDFNSIPVEPNNQSTLVSEDTIHNLLQ 421

Query: 180 LISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIE 239
           LISNTGP IECKLLQVLVGLTSSP+T+ S+V+AI+SSGA ISLVQF+EAPQ DLR+++I+
Sbjct: 422 LISNTGPAIECKLLQVLVGLTSSPSTISSIVNAIRSSGAVISLVQFIEAPQLDLRVSAIK 481

Query: 240 LIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTR 299
           L+QN+SPH+  ELADALRG+VGQL SL R+I+EN GI++EQAAAVGLLA+LPE D GL+R
Sbjct: 482 LLQNISPHLSQELADALRGSVGQLSSLFRIIAENTGITEEQAAAVGLLADLPEMDFGLSR 541

Query: 300 QMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSD---EPDAIALC 356
           QMLDEGAF L++ R+  ++ GETRG RF+TPFLEGL+ +LAR+T ++     EPDA A C
Sbjct: 542 QMLDEGAFELVYLRIVQLRQGETRGGRFLTPFLEGLVRILARITSLVPAAECEPDARAFC 601

Query: 357 CEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSK 416
             HNLAALFIELLQSNGLD VQMVSA ALENLSLESKNLT++P LP  GFCASIFPC S 
Sbjct: 602 RRHNLAALFIELLQSNGLDNVQMVSALALENLSLESKNLTQIPTLPEPGFCASIFPCLSA 661

Query: 417 QPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVD 476
           QPV+TGLC LHRG CSL+E+FCLLE  AV KL+ALLDHTNEKVVEA+LAALST++DDGVD
Sbjct: 662 QPVLTGLCPLHRGTCSLRESFCLLEDKAVNKLVALLDHTNEKVVEAALAALSTLLDDGVD 721

Query: 477 IEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTAL 536
           +E+GV +L +A+G++PI +VLLE RTENL RRAVW VER+LR+DDIA E S +P VSTAL
Sbjct: 722 VEKGVNILYDAEGVQPIFNVLLENRTENLMRRAVWTVERLLRSDDIAIEFSNNPKVSTAL 781

Query: 537 VDAFQHADYRTRQIAERALKHIDKIPNFSGIFPN 570
           VDAFQH DY+TRQ AERAL+H+DK+PNFS IFPN
Sbjct: 782 VDAFQHGDYKTRQTAERALRHVDKLPNFSNIFPN 815

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326501546|dbj|BAK02562.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  792 bits (2046), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/572 (69%), Positives = 483/572 (84%)

Query: 1   MTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFL 60
           ++SSK ENLLTV++A+KTL NLE CE NVRQMAENGRLQPLL  +LEG  +T+LS+AA++
Sbjct: 234 LSSSKIENLLTVDRADKTLVNLESCEKNVRQMAENGRLQPLLRLLLEGSPDTQLSMAAYV 293

Query: 61  GDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILP 120
           G+L L +DVKV VA+T GS L+NIMKSGN +AREAALKALNQISS + SAK+LI AGILP
Sbjct: 294 GELVLTNDVKVFVAQTAGSALVNIMKSGNREAREAALKALNQISSYDVSAKILIEAGILP 353

Query: 121 PLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHL 180
           PL+ DLFTVGSN LPMRLKEVSATILANVV SG +F SI +  + QTLVSE+IVHNLLHL
Sbjct: 354 PLIADLFTVGSNQLPMRLKEVSATILANVVASGANFQSIPLDHNRQTLVSEEIVHNLLHL 413

Query: 181 ISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIEL 240
           ISNTGP  ECKLLQVLVGLTSS TTV S+V AIKSSGAT+SL+QFVEAPQ ++R+ASI+L
Sbjct: 414 ISNTGPATECKLLQVLVGLTSSSTTVQSIVDAIKSSGATVSLIQFVEAPQREVRMASIKL 473

Query: 241 IQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQ 300
           + N+SP MG ELA+A RG   QL SLIRVI++N GIS+EQA A GL+A+LP +D  LTR+
Sbjct: 474 LNNISPCMGQELAEAFRGNFSQLSSLIRVIADNNGISEEQAPAAGLVADLPLQDSVLTRR 533

Query: 301 MLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHN 360
           ++++GAF  I S+V  I+ GE+RG RFV PFLEGL+ +++R+TF+L D+PD +A+  E+N
Sbjct: 534 LVEDGAFTTIISKVIMIRQGESRGGRFVNPFLEGLVRIVSRITFILEDDPDIVAVAREYN 593

Query: 361 LAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVI 420
           L ALF +LLQ NGLD VQ+VSATAL NLS +SK+LTK+   P +G C SIFPC S++ V 
Sbjct: 594 LTALFSDLLQMNGLDTVQIVSATALGNLSGQSKHLTKILPPPNAGLCFSIFPCLSQKSVA 653

Query: 421 TGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQG 480
           TG+CR+H G+CS +E+FCLLEG  VEKL+A LDH NEKVVEASL ALST++DDGVDI+QG
Sbjct: 654 TGVCRVHHGICSSRESFCLLEGKVVEKLVACLDHNNEKVVEASLTALSTLLDDGVDIDQG 713

Query: 481 VMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAF 540
           VMVLC+A+G+KPILDVL E RTE L++RAVW VERILRTD+IAYE+SG+ NVSTALV+AF
Sbjct: 714 VMVLCDAEGVKPILDVLCENRTEALRQRAVWAVERILRTDEIAYEISGNQNVSTALVEAF 773

Query: 541 QHADYRTRQIAERALKHIDKIPNFSGIFPNMG 572
           +H D+RTRQIAERALKH+DK+PNFSGIF  +G
Sbjct: 774 RHGDFRTRQIAERALKHVDKLPNFSGIFSKIG 805

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414877836|tpg|DAA54967.1| TPA: hypothetical protein ZEAMMB73_529269 [Zea mays]

 Score =  775 bits (2002), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/572 (67%), Positives = 471/572 (82%)

Query: 1   MTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFL 60
           ++SSK EN L V++AEKTL NLE CE NVRQMAENGRLQPLL  +LEG  + +LS+AA+L
Sbjct: 237 LSSSKVENSLIVDRAEKTLENLESCEKNVRQMAENGRLQPLLRLLLEGSPDIQLSMAAYL 296

Query: 61  GDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILP 120
           G+L L++DVKVLVA+  GS L+NIMK GN +AREAALKALNQISS + SAK+LI AGILP
Sbjct: 297 GELVLSNDVKVLVAQKAGSTLVNIMKKGNREAREAALKALNQISSYDASAKILIEAGILP 356

Query: 121 PLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHL 180
           PL+ DLFTVGSN LPMRLKEVSATILANVV SG  F+SI +  + QTLVSEDIVHNLLHL
Sbjct: 357 PLITDLFTVGSNQLPMRLKEVSATILANVVASGARFESIPLDHNRQTLVSEDIVHNLLHL 416

Query: 181 ISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIEL 240
           ISNTGP IECKLLQVLVGLT S T+V ++V AIK SGA +SL+QFVEAPQ ++R+ SI+L
Sbjct: 417 ISNTGPAIECKLLQVLVGLTDSSTSVQNIVDAIKGSGAIVSLIQFVEAPQREVRMNSIKL 476

Query: 241 IQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQ 300
           + N+SP+MG ELADA RG   QL SL++VI +N GIS+EQAAA GL+A+LP RD  LTR+
Sbjct: 477 LNNISPYMGQELADAFRGNFSQLRSLVKVIVDNNGISEEQAAAAGLVADLPMRDSVLTRR 536

Query: 301 MLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHN 360
           +L +GAF  I  +V  I+ GE RG RFV PFLEGL+ +++R+TFVL D+PD I + C++N
Sbjct: 537 LLQDGAFATIIPKVLRIRQGEIRGGRFVNPFLEGLVRIVSRITFVLDDDPDIIVVACDYN 596

Query: 361 LAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVI 420
           L +LF +LLQ NGLD VQ+VSA ALE LS +SK+LTK+   P  G C SIFPC S++ V 
Sbjct: 597 LTSLFTDLLQMNGLDIVQIVSANALEKLSQQSKHLTKILPAPSPGLCFSIFPCLSQKTVA 656

Query: 421 TGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQG 480
           TG+CR+H G+CS +E+FCLLEG +VEKL+A LD+ NEKVVEA+L+ALST+++DGVDI+QG
Sbjct: 657 TGVCRVHCGICSARESFCLLEGKSVEKLVACLDNNNEKVVEAALSALSTLLEDGVDIDQG 716

Query: 481 VMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAF 540
           VMVLC+A+GI PILDVL E R E L++RAVW VERILR D+IAYE+SG+ NV TALV+AF
Sbjct: 717 VMVLCDAEGINPILDVLCENRNEALRQRAVWAVERILRMDEIAYEISGNQNVGTALVEAF 776

Query: 541 QHADYRTRQIAERALKHIDKIPNFSGIFPNMG 572
           +H DYRTRQ+AERALKH+DK+PNFSGIF  MG
Sbjct: 777 RHGDYRTRQVAERALKHVDKLPNFSGIFSKMG 808

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357160297|ref|XP_003578720.1| PREDICTED: U-box domain-containing protein 43-like [Brachypodium distachyon]

 Score =  769 bits (1987), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/572 (67%), Positives = 475/572 (83%), Gaps = 1/572 (0%)

Query: 1   MTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFL 60
           ++SSK EN+LT+++AEKTL NLE CE NVRQMAEN RL+PLL  +LEG  +T+LS+AA+L
Sbjct: 234 LSSSKVENVLTIDRAEKTLVNLESCEKNVRQMAENSRLRPLLRLLLEGSPDTQLSMAAYL 293

Query: 61  GDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILP 120
           G+L L++D+KVLVA+  GS L+N+MKSGN +AREAALKALNQISS + SAK+LI AGILP
Sbjct: 294 GELVLSNDIKVLVAQKAGSALVNVMKSGNREAREAALKALNQISSYDTSAKILIEAGILP 353

Query: 121 PLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHL 180
           PLV DLFTVGSN LPMRLKEVSATILANVV SG +F SIT+  + QTLVSE+IVHNLLHL
Sbjct: 354 PLVTDLFTVGSNQLPMRLKEVSATILANVVASGANFQSITLDHNRQTLVSEEIVHNLLHL 413

Query: 181 ISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIEL 240
           ISNTGP IECKLLQVLVGLTSS  TV +VV AIKSSGAT+SL+QFVEAPQ ++R+ASI+L
Sbjct: 414 ISNTGPAIECKLLQVLVGLTSSSKTVQNVVDAIKSSGATVSLIQFVEAPQREVRMASIKL 473

Query: 241 IQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQ 300
           + N+SP+MG ELADA R    QL SLIRVI++N GIS+EQA A GL+ +LP++D  LTR+
Sbjct: 474 LNNISPYMGQELADAFRANFSQLSSLIRVIADNNGISEEQAPAAGLVGDLPQQDSVLTRR 533

Query: 301 MLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHN 360
           ++ +GAF  I S+V  I+ GE+RG RF  PF+EGL+ +++R+TFVL D+PD IA+  E+N
Sbjct: 534 LVQDGAFATIISKVIMIRQGESRGGRFANPFMEGLVRIISRITFVLDDDPDIIAVAREYN 593

Query: 361 LAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVI 420
           L ALF +LLQ  GLD VQ+VSATAL NLS +SK+LTK+   P  G C SIFPC S++ V 
Sbjct: 594 LTALFSDLLQM-GLDSVQIVSATALGNLSRQSKHLTKILPPPNPGLCFSIFPCISQRSVP 652

Query: 421 TGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQG 480
           TG+CR+H G+CS +E+FCLLEG  VEKL+A LDH NEKVVEASL ALST+++DGVDIEQG
Sbjct: 653 TGVCRVHVGICSSRESFCLLEGKVVEKLVACLDHDNEKVVEASLTALSTLLEDGVDIEQG 712

Query: 481 VMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAF 540
           VM+LC+ +G+KPILDVL E R+E L+ RAVW VERILRT +IA E+SG+ NV TALV+AF
Sbjct: 713 VMILCDVEGVKPILDVLCENRSEALRERAVWAVERILRTHEIACEISGNQNVGTALVEAF 772

Query: 541 QHADYRTRQIAERALKHIDKIPNFSGIFPNMG 572
           +H D+RTRQ+AERALKH+DK+PNFSGIF  +G
Sbjct: 773 RHGDFRTRQVAERALKHVDKLPNFSGIFSKIG 804

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	572
TAIR|locus:2014584	811	PUB43 "plant U-box 43" [Arabid	1.0	0.705	0.646	6e-190
TAIR|locus:2030462	801	SAUL1 "senescence-associated E	0.986	0.704	0.639	1.2e-184
ASPGD|ASPL0000008980	579	AN12408 [Emericella nidulans (	0.424	0.419	0.242	1.1e-06
CGD|CAL0001835	585	VAC8 [Candida albicans (taxid:	0.435	0.425	0.242	2.7e-05
UNIPROTKB|Q59MN0	585	VAC8 "Vacuolar protein 8" [Can	0.435	0.425	0.242	2.7e-05
UNIPROTKB|F1N1K5	538	KPNA5 "Importin subunit alpha"	0.323	0.343	0.286	2.3e-06
SGD|S000000739	578	VAC8 "Phosphorylated and palmi	0.465	0.460	0.237	2.1e-05
TAIR|locus:2096687	355	AT3G01400 [Arabidopsis thalian	0.222	0.357	0.273	4.3e-06
UNIPROTKB|O15131	536	KPNA5 "Importin subunit alpha-	0.323	0.345	0.281	6.3e-06
UNIPROTKB|J9NTP2	539	KPNA5 "Importin subunit alpha"	0.323	0.343	0.281	8.1e-06

TAIR|locus:2014584 PUB43 "plant U-box 43" [Arabidopsis thaliana (taxid:3702)]

 Score = 1841 (653.1 bits), Expect = 6.0e-190, P = 6.0e-190
 Identities = 371/574 (64%), Positives = 457/574 (79%)

Query:     1 MTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFL 60
             +TSSKSEN+ TVEKA+KTL NLE+ E NVRQMA NGRLQPLL ++LEG  ETK+S+A +L
Sbjct:   238 LTSSKSENVSTVEKADKTLTNLERSEENVRQMAINGRLQPLLAKLLEGSPETKVSMAFYL 297

Query:    61 GDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILP 120
             G LALN+DVKV+VA+TVGS LI++M++ +M  REAAL ALN ISS E SAK+LI+ GILP
Sbjct:   298 GVLALNNDVKVIVAQTVGSSLIDLMRTRDMSQREAALGALNNISSFEGSAKLLINTGILP 357

Query:   121 PLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHL 180
             PL+KDLF VG N LP+RLKEVSATILAN+VN G+DFD + VGP +QTLVSE+IV NLL L
Sbjct:   358 PLIKDLFYVGPNQLPIRLKEVSATILANIVNIGYDFDKVPVGPHHQTLVSEEIVENLLQL 417

Query:   181 ISNTGPTIECKLLQXXXXXXXXXXXXXXXXXAIKSSGATISLVQFVEAPQND-LRLASIE 239
              SNTGP I+ KLL                  AI++S A ISLVQFVE  +ND LRLASI+
Sbjct:   418 TSNTGPEIQGKLLAVLVGLTSCPNSVINVVSAIRNSAAIISLVQFVEIHENDDLRLASIK 477

Query:   240 LIQNLSPHMGHELADALRGAVGQLGSLIRVISENVG-ISKEQAAAVGLLAELPERDLGLT 298
             L+ N+SPHM  ELA+ALR  VGQLGSL+ +ISEN   I++EQAAA GLLAELPERDL LT
Sbjct:   478 LLHNISPHMSEELANALRSTVGQLGSLVSIISENTPTITEEQAAAAGLLAELPERDLVLT 537

Query:   299 RQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCE 358
              ++L EGAF  I S++  I+ GE RG RF   FLEGL+S+LAR+TF L+ E DA   CCE
Sbjct:   538 MRLLREGAFEKIISKIVGIRQGEIRGIRFERTFLEGLVSILARITFALTKETDATLFCCE 597

Query:   359 HNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQP 418
              NL +LF++LLQSN  D +Q  SATALENLSLESKNLTK+PELPP  +C SIF C SK P
Sbjct:   598 KNLPSLFLDLLQSNSQDNIQRASATALENLSLESKNLTKIPELPPPTYCVSIFSCLSKPP 657

Query:   419 VITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIE 478
             V+ G+C++H+G+CS++E+FCL+EG AV+KL+ LLDH N+KVV  +LAALST+++DG+D+ 
Sbjct:   658 VVLGICKIHQGICSVRESFCLVEGQAVDKLVDLLDHENDKVVGPALAALSTLLEDGLDVV 717

Query:   479 QGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVD 538
             QGV ++ EA GI PIL+VLLE RTENL+ RAVW+VERILR ++IA EV  + NV+ ALVD
Sbjct:   718 QGVRLIDEADGITPILNVLLENRTENLRIRAVWMVERILRIEEIAREVGEEQNVTAALVD 777

Query:   539 AFQHADYRTRQIAERALKHIDKIPNFSGIFPNMG 572
             AFQ+AD+RTRQIAE+AL+HIDKIPNFSGIF N+G
Sbjct:   778 AFQNADFRTRQIAEKALRHIDKIPNFSGIFTNIG 811

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2030462 SAUL1 "senescence-associated E3 ubiquitin ligase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1791 (635.5 bits), Expect = 1.2e-184, P = 1.2e-184
 Identities = 366/572 (63%), Positives = 451/572 (78%)

Query:     1 MTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFL 60
             +TSS SEN+  VEKA++TL N+E+ E  VRQMA  GRLQPLL ++LEG  ETKLS+A+FL
Sbjct:   236 LTSSNSENVSIVEKADRTLENMERSEEIVRQMASYGRLQPLLGKLLEGSPETKLSMASFL 295

Query:    61 GDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILP 120
             G+L LN+DVKVLVA+TVGS L+++M+SG+M  REAALKALN+ISS E SAKVLI  GILP
Sbjct:   296 GELPLNNDVKVLVAQTVGSSLVDLMRSGDMPQREAALKALNKISSFEGSAKVLISKGILP 355

Query:   121 PLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHL 180
             PL+KDLF VG N+LP+RLKEVSATILAN+VN G+DFD  T       LVSE+ V NLLHL
Sbjct:   356 PLIKDLFYVGPNNLPIRLKEVSATILANIVNIGYDFDKAT-------LVSENRVENLLHL 408

Query:   181 ISNTGPTIECKLLQXXXXXXXXXXXXXXXXXAIKSSGATISLVQFVEAPQND-LRLASIE 239
             ISNTGP I+CKLL+                 AIK+SGA ISLVQF+E  +ND LRLASI+
Sbjct:   409 ISNTGPAIQCKLLEVLVGLTSCPKTVPKVVYAIKTSGAIISLVQFIEVRENDDLRLASIK 468

Query:   240 LIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTR 299
             L+ NLSP M  ELA AL G  GQLGSL+ +ISE   I++EQAAA GLLAELP+RDLGLT+
Sbjct:   469 LLHNLSPFMSEELAKALCGTAGQLGSLVAIISEKTPITEEQAAAAGLLAELPDRDLGLTQ 528

Query:   300 QMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEH 359
             +ML+ GAF  I S+V  I+ G+ +G RFV PFLEGL+ +LAR+TFV + E  AI  C EH
Sbjct:   529 EMLEVGAFEKIISKVFGIRQGDIKGMRFVNPFLEGLVRILARITFVFNKEARAINFCREH 588

Query:   360 NLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPV 419
             ++A+LF+ LLQSNG D +QMVSA ALENLSLES  LT++P+ PP  +C SIF C  K  V
Sbjct:   589 DVASLFLHLLQSNGQDNIQMVSAMALENLSLESIKLTRMPDPPPVNYCGSIFSCVRKPHV 648

Query:   420 ITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQ 479
             + GLC++H+G+CSL+ETFCL+EG AVEKL+ALLDH N KVVEA+LAALS++++DG+D+E+
Sbjct:   649 VNGLCKIHQGICSLRETFCLVEGGAVEKLVALLDHENVKVVEAALAALSSLLEDGLDVEK 708

Query:   480 GVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDA 539
             GV +L EA GI+ IL+VL E RTE L RRAVW+VERILR +DIA EV+ + ++S ALVDA
Sbjct:   709 GVKILDEADGIRHILNVLRENRTERLTRRAVWMVERILRIEDIAREVAEEQSLSAALVDA 768

Query:   540 FQHADYRTRQIAERALKHIDKIPNFSGIFPNM 571
             FQ+AD+RTRQIAE ALKHIDKIPNFS IFPN+
Sbjct:   769 FQNADFRTRQIAENALKHIDKIPNFSSIFPNI 800

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0070696 "transmembrane receptor protein serine/threonine kinase binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0010115 "regulation of abscisic acid biosynthetic process" evidence=IMP

GO:0010150 "leaf senescence" evidence=IMP

GO:0010271 "regulation of chlorophyll catabolic process" evidence=IMP

GO:0010380 "regulation of chlorophyll biosynthetic process" evidence=IMP

GO:0090359 "negative regulation of abscisic acid biosynthetic process" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

ASPGD|ASPL0000008980 AN12408 [Emericella nidulans (taxid:162425)]

 Score = 146 (56.5 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
 Identities = 65/268 (24%), Positives = 126/268 (47%)

Query:     5 KSENLLTVEKAEKTLANLE-KCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDL 63
             +S ++     A   L NL    +N V  +A  G L PL+ Q++    E + +    + +L
Sbjct:   116 QSSDIEVQRAASAALGNLAVNADNKVLIVALGG-LAPLIKQMMSPNVEVQCNAVGCITNL 174

Query:    64 ALNSDVKVLVARTVGSC--LINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPP 121
             A + D K  +AR+ G+   LI + KS +M+ +  A  AL  ++  + + + L++AG +P 
Sbjct:   175 ATHEDNKAKIARS-GALGPLIRLAKSKDMRVQRNATGALLNMTHSDDNRQQLVNAGAIPV 233

Query:   122 LVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLI 181
             LV+ L    S+ + ++      T L+N+     +   +      QT     +V +L+HL+
Sbjct:   234 LVQLL---SSSDVDVQY--YCTTALSNIAVDASNRKRLA-----QT--ESRLVQSLVHLM 281

Query:   182 SNTGPTIECKLLQXXXXXXXXXXXXXXXXXAIKSSGATISLVQFVEAPQNDLRLASIELI 241
              ++ P ++C   Q                  +++ G    L++ +++    L L+++  I
Sbjct:   282 DSSTPKVQC---QAALALRNLASDEKYQLEIVRAKGLP-PLLRLLQSSYLPLILSAVACI 337

Query:   242 QNLSPHMGHE--LADA--LRGAVGQLGS 265
             +N+S H  +E  + DA  L+  V  LGS
Sbjct:   338 RNISIHPLNESPIIDAGFLKPLVDLLGS 365

GO:0000329 "fungal-type vacuole membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0000011 "vacuole inheritance" evidence=IEA

CGD|CAL0001835 VAC8 [Candida albicans (taxid:5476)]

 Score = 133 (51.9 bits), Expect = 2.7e-05, P = 2.7e-05
 Identities = 67/276 (24%), Positives = 120/276 (43%)

Query:    19 LANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVG 78
             L NL     N   + E G L+PL+ Q++    E + +    + +LA   D K  +A++ G
Sbjct:   111 LGNLAVNTENKILIVEMGGLEPLIRQMMSTNIEVQCNAVGCITNLATQDDNKSKIAKS-G 169

Query:    79 SC--LINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPM 136
             +   L  + KS +++ +  A  AL  ++    + + L++AG +P LV  L    SN    
Sbjct:   170 ALIPLTKLAKSKDIRVQRNATGALLNMTHSGENRQELVNAGAVPVLVSLL----SNE-DA 224

Query:   137 RLKEVSATILANVVNSGHDFDSITVGPDNQTLVSED--IVHNLLHLISNTGPTIECKLLQ 194
              ++    T L+N+       D +    + + L S +  +V  L+HL+ +  P ++C   Q
Sbjct:   225 DVQYYCTTALSNIA-----VDEV----NRKKLASTEPKLVGQLVHLMDSPSPRVQC---Q 272

Query:   195 XXXXXXXXXXXXXXXXXAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELAD 254
                               +++ G    LVQ +      L LA++  I+N+S H    L +
Sbjct:   273 ATLALRNLASDSGYQVEIVRAGGLP-HLVQLLTCNHQPLVLAAVACIRNISIH---PLNE 328

Query:   255 ALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAEL 290
             AL    G L  L+ ++ +     + Q  AV  L  L
Sbjct:   329 ALIIEAGFLKPLVGLL-DYTDSEEIQCHAVSTLRNL 363

GO:0000011 "vacuole inheritance" evidence=ISS;IMP

GO:0030448 "hyphal growth" evidence=IMP

GO:0000324 "fungal-type vacuole" evidence=ISS

GO:0000329 "fungal-type vacuole membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0071563 "Myo2p-Vac17p-Vac8p transport complex" evidence=IEA

GO:0071561 "nucleus-vacuole junction" evidence=IEA

GO:0043495 "protein anchor" evidence=IEA

GO:0071216 "cellular response to biotic stimulus" evidence=IMP

GO:0030447 "filamentous growth" evidence=IMP

GO:0036180 "filamentous growth of a population of unicellular organisms in response to biotic stimulus" evidence=IMP

GO:0071562 "nucleus-vacuole junction assembly" evidence=IEA

GO:0071255 "CVT vesicle assembly" evidence=IEA

GO:0042144 "vacuole fusion, non-autophagic" evidence=IEA

GO:0016236 "macroautophagy" evidence=IEA

UNIPROTKB|Q59MN0 VAC8 "Vacuolar protein 8" [Candida albicans SC5314 (taxid:237561)]

 Score = 133 (51.9 bits), Expect = 2.7e-05, P = 2.7e-05
 Identities = 67/276 (24%), Positives = 120/276 (43%)

Query:    19 LANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVG 78
             L NL     N   + E G L+PL+ Q++    E + +    + +LA   D K  +A++ G
Sbjct:   111 LGNLAVNTENKILIVEMGGLEPLIRQMMSTNIEVQCNAVGCITNLATQDDNKSKIAKS-G 169

Query:    79 SC--LINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPM 136
             +   L  + KS +++ +  A  AL  ++    + + L++AG +P LV  L    SN    
Sbjct:   170 ALIPLTKLAKSKDIRVQRNATGALLNMTHSGENRQELVNAGAVPVLVSLL----SNE-DA 224

Query:   137 RLKEVSATILANVVNSGHDFDSITVGPDNQTLVSED--IVHNLLHLISNTGPTIECKLLQ 194
              ++    T L+N+       D +    + + L S +  +V  L+HL+ +  P ++C   Q
Sbjct:   225 DVQYYCTTALSNIA-----VDEV----NRKKLASTEPKLVGQLVHLMDSPSPRVQC---Q 272

Query:   195 XXXXXXXXXXXXXXXXXAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELAD 254
                               +++ G    LVQ +      L LA++  I+N+S H    L +
Sbjct:   273 ATLALRNLASDSGYQVEIVRAGGLP-HLVQLLTCNHQPLVLAAVACIRNISIH---PLNE 328

Query:   255 ALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAEL 290
             AL    G L  L+ ++ +     + Q  AV  L  L
Sbjct:   329 ALIIEAGFLKPLVGLL-DYTDSEEIQCHAVSTLRNL 363

GO:0000011 "vacuole inheritance" evidence=ISS;IMP

GO:0000324 "fungal-type vacuole" evidence=ISS

GO:0030447 "filamentous growth" evidence=IMP

GO:0030448 "hyphal growth" evidence=IMP

GO:0036180 "filamentous growth of a population of unicellular organisms in response to biotic stimulus" evidence=IMP

GO:0071216 "cellular response to biotic stimulus" evidence=IMP

UNIPROTKB|F1N1K5 KPNA5 "Importin subunit alpha" [Bos taurus (taxid:9913)]

 Score = 143 (55.4 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
 Identities = 61/213 (28%), Positives = 96/213 (45%)

Query:   355 LCCEHNLAALFIELL-QSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPC 413
             L CE  +    +ELL  SN L   +  +  AL NL    KN       PP  F + + PC
Sbjct:   208 LNCE--ILPPLLELLTNSNRLTTTRN-AVWALSNLC-RGKN-------PPPNF-SKVSPC 255

Query:   414 --------FSKQP-VITGLCRLHRGLC--SLKETFCLLEGHAVEKLIALLDHTNEKVVEA 462
                     FS  P V+  +C     L   S  +   +++     +L+ LL H + KVV  
Sbjct:   256 LNVLSRLLFSSDPDVLADVCWALSYLSDGSNDKIQAVIDSGVCRRLVELLMHNDYKVVSP 315

Query:   463 SLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDI 522
             +L A+  ++  G DI+  V++ C A    P L  LL    E++++ A W V  I   +  
Sbjct:   316 ALRAVGNIVT-GDDIQTQVILNCSAL---PCLLHLLSSSKESIRKEACWTVSNITAGNRA 371

Query:   523 AYEVSGDPNVSTALVDAFQHADYRTRQIAERAL 555
               +   D N+   L++  Q A++RTR+ A  A+
Sbjct:   372 QIQAVIDANIFPVLIEILQKAEFRTRKEAAWAI 404

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

SGD|S000000739 VAC8 "Phosphorylated and palmitoylated vacuolar membrane protein" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 134 (52.2 bits), Expect = 2.1e-05, P = 2.1e-05
 Identities = 69/291 (23%), Positives = 123/291 (42%)

Query:    19 LANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVG 78
             L NL     N   + E G L+PL+ Q++    E + +    + +LA   D K  +A T G
Sbjct:   109 LGNLAVNNENKLLIVEMGGLEPLINQMMGDNVEVQCNAVGCITNLATRDDNKHKIA-TSG 167

Query:    79 SC--LINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPM 136
             +   L  + KS +++ +  A  AL  ++  E + K L++AG +P LV  L +   +    
Sbjct:   168 ALIPLTKLAKSKHIRVQRNATGALLNMTHSEENRKELVNAGAVPVLVSLLSSTDPD---- 223

Query:   137 RLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQXX 196
              ++    T L+N+     +   +      QT     +V  L+ L+ +    ++C   Q  
Sbjct:   224 -VQYYCTTALSNIAVDEANRKKLA-----QT--EPRLVSKLVSLMDSPSSRVKC---QAT 272

Query:   197 XXXXXXXXXXXXXXXAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADAL 256
                             +++ G    LV+ +++    L LAS+  I+N+S H    L + L
Sbjct:   273 LALRNLASDTSYQLEIVRAGGLP-HLVKLIQSDSIPLVLASVACIRNISIH---PLNEGL 328

Query:   257 RGAVGQLGSLIRVISENVGISKE-QAAAVGLLAELPERDLGLTRQMLDEGA 306
                 G L  L+R++      S+E Q  AV  L  L        ++  + GA
Sbjct:   329 IVDAGFLKPLVRLLDYKD--SEEIQCHAVSTLRNLAASSEKNRKEFFESGA 377

GO:0042144 "vacuole fusion, non-autophagic" evidence=IMP

GO:0043495 "protein anchor" evidence=IMP;IPI

GO:0071562 "nucleus-vacuole junction assembly" evidence=IMP

GO:0071561 "nucleus-vacuole junction" evidence=IDA;IPI

GO:0000011 "vacuole inheritance" evidence=IEA;IMP

GO:0071255 "CVT vesicle assembly" evidence=IMP

GO:0016236 "macroautophagy" evidence=IMP

GO:0034727 "piecemeal microautophagy of nucleus" evidence=IMP

GO:0000329 "fungal-type vacuole membrane" evidence=IDA

GO:0071563 "Myo2p-Vac17p-Vac8p transport complex" evidence=IDA;IPI

GO:0005774 "vacuolar membrane" evidence=IEA

GO:0005773 "vacuole" evidence=IEA

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2096687 AT3G01400 [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
 Identities = 35/128 (27%), Positives = 65/128 (50%)

Query:     6 SENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLAL 65
             S +L   E     + NL  C+ N   +A +G ++PL+  +  G    K + A  L  L+ 
Sbjct:   116 SSDLQLQEYGVTAILNLSLCDENKESIASSGAIKPLVRALKMGTPTAKENAACALLRLSQ 175

Query:    66 NSDVKVLVARTVG-SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVK 124
               + KV + R+     L+N++++G  +A++ A  AL  + S + +    + +GI+ PLV+
Sbjct:   176 IEENKVAIGRSGAIPLLVNLLETGGFRAKKDASTALYSLCSAKENKIRAVQSGIMKPLVE 235

Query:   125 DLFTVGSN 132
              +   GSN
Sbjct:   236 LMADFGSN 243

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|O15131 KPNA5 "Importin subunit alpha-6" [Homo sapiens (taxid:9606)]

 Score = 138 (53.6 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
 Identities = 60/213 (28%), Positives = 95/213 (44%)

Query:   355 LCCEHNLAALFIELL-QSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPC 413
             L CE  +    +ELL  SN L   +  +  AL NL    KN       PP  F + + PC
Sbjct:   206 LNCE--ILPPLLELLTNSNRLTTTRN-AVWALSNLC-RGKN-------PPPNF-SKVSPC 253

Query:   414 --------FSKQP-VITGLCRLHRGLCS--LKETFCLLEGHAVEKLIALLDHTNEKVVEA 462
                     FS  P V+  +C     L      +   +++     +L+ LL H + KVV  
Sbjct:   254 LNVLSRLLFSSDPDVLADVCWALSYLSDGPNDKIQAVIDSGVCRRLVELLMHNDYKVVSP 313

Query:   463 SLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDI 522
             +L A+  ++  G DI+  V++ C A    P L  LL    E++++ A W V  I   +  
Sbjct:   314 ALRAVGNIVT-GDDIQTQVILNCSAL---PCLLHLLSSPKESIRKEACWTVSNITAGNRA 369

Query:   523 AYEVSGDPNVSTALVDAFQHADYRTRQIAERAL 555
               +   D N+   L++  Q A++RTR+ A  A+
Sbjct:   370 QIQAVIDANIFPVLIEILQKAEFRTRKEAAWAI 402

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006607 "NLS-bearing substrate import into nucleus" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0019221 "cytokine-mediated signaling pathway" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|J9NTP2 KPNA5 "Importin subunit alpha" [Canis lupus familiaris (taxid:9615)]

 Score = 138 (53.6 bits), Expect = 8.1e-06, Sum P(2) = 8.1e-06
 Identities = 60/213 (28%), Positives = 95/213 (44%)

Query:   355 LCCEHNLAALFIELL-QSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPC 413
             L CE  +    +ELL  SN L   +  +  AL NL    KN       PP  F + + PC
Sbjct:   209 LNCE--ILPPLLELLTNSNRLTTTRN-AVWALSNLC-RGKN-------PPPNF-SKVSPC 256

Query:   414 --------FSKQP-VITGLCRLHRGLCS--LKETFCLLEGHAVEKLIALLDHTNEKVVEA 462
                     FS  P V+  +C     L      +   +++     +L+ LL H + KVV  
Sbjct:   257 LNVLSRLLFSSDPDVLADVCWALSYLSDGPNDKIQAVIDSGVCRRLVELLMHNDYKVVSP 316

Query:   463 SLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDI 522
             +L A+  ++  G DI+  V++ C A    P L  LL    E++++ A W V  I   +  
Sbjct:   317 ALRAVGNIVT-GDDIQTQVILNCSAL---PCLLHLLSSPKESIRKEACWTVSNITAGNRA 372

Query:   523 AYEVSGDPNVSTALVDAFQHADYRTRQIAERAL 555
               +   D N+   L++  Q A++RTR+ A  A+
Sbjct:   373 QIQAVIDANIFPVLIEILQKAEFRTRKEAAWAI 405

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SFX2	PUB43_ARATH	6, ., 3, ., 2, ., -	0.6672	1.0	0.7053	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	572
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	4e-06
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	8e-05
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	0.004

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 23/115 (20%), Positives = 50/115 (43%), Gaps = 4/115 (3%)

Query: 444 AVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTE 503
            +  L++LL  ++E V   +  ALS +     D  Q    + EA G+  ++  LL+   E
Sbjct: 8   GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQ---AVVEAGGLPALVQ-LLKSEDE 63

Query: 504 NLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHI 558
            + + A+W +  +    +    +  +      LV+    ++   ++ A  AL ++
Sbjct: 64  EVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 41.9 bits (99), Expect = 8e-05
 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 4/78 (5%)

Query: 439 LLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLL 498
           ++E   +  L+ LL   +E+VV+A+L AL  +     D +     +    G  P L  LL
Sbjct: 45  VVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKL----IVLEAGGVPKLVNLL 100

Query: 499 EKRTENLQRRAVWVVERI 516
           +   E++Q+ A   +  +
Sbjct: 101 DSSNEDIQKNATGALSNL 118

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 40.1 bits (94), Expect = 0.004
 Identities = 62/253 (24%), Positives = 111/253 (43%), Gaps = 37/253 (14%)

Query: 40  PLLTQILE-GPQETKLSLAAFLGDLALNSDVKVLVARTVGSC---LINIMKSGNMQAREA 95
           PLL  +L  G    K++ AA LG L    D++V V   +G C   L++++KSG+ +A++A
Sbjct: 61  PLLVSLLRSGTLGAKVNAAAVLGVLCKEEDLRVKV--LLGGCIPPLLSLLKSGSAEAQKA 118

Query: 96  ALKALNQISSCEPS----AKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVN 151
           A +A+  +SS   S    +K+    G++P L  D    G+    +    ++   L N+  
Sbjct: 119 AAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLW-DQLQPGNKQDKVVEGLLTGA-LRNLCG 176

Query: 152 SGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIE---CKLLQVLVGLTSSPTTVLS 208
           S   F S T+            V  L+ L+S+     +     LL  L+          S
Sbjct: 177 STDGFWSATLEAGG--------VDILVKLLSSGNSDAQANAASLLARLM------MAFES 222

Query: 209 VVSAIKSSGATISLVQFVEAPQND--LRLASIELIQNLSPHMGHELADALRGAVGQLGSL 266
            +S +  +GA   L++ +    N+  +R  +   ++ LS       +   + A+   G +
Sbjct: 223 SISKVLDAGAVKQLLKLLG-QGNEVSVRAEAAGALEALSSQ-----SKEAKQAIADAGGI 276

Query: 267 IRVISENVGISKE 279
             +I+  V  SKE
Sbjct: 277 PALINATVAPSKE 289

Length = 2102

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	572
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	100.0
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.96
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.95
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.9
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.79
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.77
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.67
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.62
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.61
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.61
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.6
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.58
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.57
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.55
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.53
PRK09687	280	putative lyase; Provisional	99.51
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.5
PRK09687	280	putative lyase; Provisional	99.49
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.49
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.45
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.44
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.43
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.41
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.28
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.28
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.2
PTZ00429	746	beta-adaptin; Provisional	99.17
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.14
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.13
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.08
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	99.07
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.97
KOG1293	678	consensus Proteins containing armadillo/beta-caten	98.97
PTZ00429	746	beta-adaptin; Provisional	98.93
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.85
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.81
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	98.77
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	98.75
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.72
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.67
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	98.62
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.62
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.51
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.45
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	98.43
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	98.41
TIGR02270	410	conserved hypothetical protein. Members are found	98.41
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.33
TIGR02270	410	conserved hypothetical protein. Members are found	98.31
PF05536	543	Neurochondrin: Neurochondrin	98.3
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	98.29
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.27
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.26
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.26
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.23
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	98.22
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.16
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	98.11
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.1
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.0
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	98.0
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	97.99
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	97.98
KOG0212	675	consensus Uncharacterized conserved protein [Funct	97.97
KOG4646	173	consensus Uncharacterized conserved protein, conta	97.97
KOG1242	569	consensus Protein containing adaptin N-terminal re	97.95
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	97.87
COG1413	335	FOG: HEAT repeat [Energy production and conversion	97.87
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	97.85
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.8
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	97.79
KOG1242	569	consensus Protein containing adaptin N-terminal re	97.74
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	97.72
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.67
PF05536	543	Neurochondrin: Neurochondrin	97.62
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	97.6
KOG2973	353	consensus Uncharacterized conserved protein [Funct	97.55
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.54
KOG2973	353	consensus Uncharacterized conserved protein [Funct	97.53
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.49
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	97.48
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	97.46
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	97.43
KOG1824	1233	consensus TATA-binding protein-interacting protein	97.38
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.37
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.35
KOG1824	1233	consensus TATA-binding protein-interacting protein	97.32
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	97.31
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.3
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	97.25
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	97.23
KOG4413	524	consensus 26S proteasome regulatory complex, subun	97.21
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	97.2
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	97.18
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	97.17
KOG0212	675	consensus Uncharacterized conserved protein [Funct	97.14
KOG2259	823	consensus Uncharacterized conserved protein [Funct	97.08
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	97.06
KOG4413	524	consensus 26S proteasome regulatory complex, subun	97.05
KOG2259	823	consensus Uncharacterized conserved protein [Funct	97.0
KOG2734	536	consensus Uncharacterized conserved protein [Funct	96.99
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	96.97
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	96.94
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	96.78
COG5369	743	Uncharacterized conserved protein [Function unknow	96.7
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	96.65
KOG2734	536	consensus Uncharacterized conserved protein [Funct	96.6
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	96.49
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	96.44
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	96.37
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	96.34
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	96.18
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	96.16
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	96.1
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	96.09
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	95.99
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	95.95
PF05004	309	IFRD: Interferon-related developmental regulator (	95.92
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	95.87
COG5096	757	Vesicle coat complex, various subunits [Intracellu	95.74
COG5369	743	Uncharacterized conserved protein [Function unknow	95.58
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	95.57
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	95.45
KOG3036	293	consensus Protein involved in cell differentiation	95.44
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	95.4
PF05004	309	IFRD: Interferon-related developmental regulator (	95.19
COG5096	757	Vesicle coat complex, various subunits [Intracellu	95.17
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	95.06
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	94.89
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	94.8
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	94.66
KOG3036	293	consensus Protein involved in cell differentiation	94.64
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	94.62
KOG0567	289	consensus HEAT repeat-containing protein [General	94.48
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	94.4
PF07814	361	WAPL: Wings apart-like protein regulation of heter	94.26
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	94.22
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	94.2
PF08045	257	CDC14: Cell division control protein 14, SIN compo	93.9
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	93.9
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	93.85
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	93.84
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	93.57
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	93.02
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	92.94
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	92.82
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	92.49
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	92.45
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	92.41
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	92.26
KOG1788	2799	consensus Uncharacterized conserved protein [Funct	92.21
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	91.68
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	91.17
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	91.03
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	90.81
KOG0414	1251	consensus Chromosome condensation complex Condensi	90.77
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	90.71
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	90.63
KOG0567	289	consensus HEAT repeat-containing protein [General	90.27
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	89.91
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	89.18
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	89.11
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	88.73
PF08045	257	CDC14: Cell division control protein 14, SIN compo	88.04
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	87.98
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	87.63
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	87.54
PF07814	361	WAPL: Wings apart-like protein regulation of heter	87.45
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	87.35
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	86.91
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	86.39
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	86.36
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	86.29
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	86.11
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	83.0
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	82.97
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	82.66
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	82.56
KOG2025	892	consensus Chromosome condensation complex Condensi	82.05
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	81.59
KOG2062	929	consensus 26S proteasome regulatory complex, subun	80.25
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	80.15

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=7.7e-50  Score=459.57  Aligned_cols=484  Identities=19%  Similarity=0.181  Sum_probs=398.2

Q ss_pred             CCCCCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccC---cchhHH-HHhhhH
Q 008257            3 SSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALN---SDVKVL-VARTVG   78 (572)
Q Consensus         3 ~~~s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~---~~~k~~-i~~~g~   78 (572)
                      ++.++++.+++.|+.+|.+|+..++|+..++..|+|+||+.+|++|+.+.|..||++|..++.+   ++++.. +...|+
T Consensus        66 lL~sg~~~vk~nAaaaL~nLS~~e~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~Ga  145 (2102)
T PLN03200         66 LLRSGTLGAKVNAAAVLGVLCKEEDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGV  145 (2102)
T ss_pred             HHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCC
Confidence            5678999999999999999999999999999999999999999999999999999999999885   555644 455677


Q ss_pred             -HHHHHhcccCC---HHHHHHHHHHHHHhhcCCCcH-HHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcC
Q 008257           79 -SCLINIMKSGN---MQAREAALKALNQISSCEPSA-KVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSG  153 (572)
Q Consensus        79 -~~Lv~lL~s~~---~~~~~~A~~aL~~Ls~~~~~~-~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~  153 (572)
                       |+|+.+|++++   ..+++.|+.+|+||+.+++++ +.++++|+||.|+++|++.     ++.+|+.|+++|.+++.+.
T Consensus       146 Vp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~-----d~~lQ~eAa~aLa~Lass~  220 (2102)
T PLN03200        146 VPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSG-----NSDAQANAASLLARLMMAF  220 (2102)
T ss_pred             hHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCC-----CHHHHHHHHHHHHHHHcCC
Confidence             99999999874   235788899999999998885 5678999999999999864     3789999999999998764


Q ss_pred             CCCCccccCCCccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCC--
Q 008257          154 HDFDSITVGPDNQTLVSEDIVHNLLHLISNT-GPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQ--  230 (572)
Q Consensus       154 ~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~-~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~--  230 (572)
                      .+..        ..+...|+||.|+++|+++ ++.+|++|+++|.+++.++   .+.+..+++.||||+|++++.+++  
T Consensus       221 ee~~--------~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s---~e~r~~Iv~aGgIp~LI~lL~sp~~e  289 (2102)
T PLN03200        221 ESSI--------SKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQS---KEAKQAIADAGGIPALINATVAPSKE  289 (2102)
T ss_pred             hHHH--------HHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCC---HHHHHHHHHCCCHHHHHHHHhCcchh
Confidence            4322        3566789999999999864 5689999999999999875   368999999999999999998655  


Q ss_pred             -------HHHHHHHHHHHHHcCCCCCh-------------hH--------------------------------------
Q 008257          231 -------NDLRLASIELIQNLSPHMGH-------------EL--------------------------------------  252 (572)
Q Consensus       231 -------~~v~~~a~~~L~~Ls~~~~~-------------~~--------------------------------------  252 (572)
                             ..++++|+|+|+|++.+...             +.                                      
T Consensus       290 ~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~  369 (2102)
T PLN03200        290 FMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVK  369 (2102)
T ss_pred             hhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHH
Confidence                   34599999999998864111             00                                      


Q ss_pred             --------------HHH-------------HhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCC
Q 008257          253 --------------ADA-------------LRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEG  305 (572)
Q Consensus       253 --------------~~~-------------i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g  305 (572)
                                    .+.             +... ++++.||+||...+.  +.|..+++.|++++.++.+.++.+++.|
T Consensus       370 Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~-daik~LV~LL~~~~~--evQ~~Av~aL~~L~~~~~e~~~aIi~~g  446 (2102)
T PLN03200        370 LLKPRDTKLVQERIIEALASLYGNAYLSRKLNHA-EAKKVLVGLITMATA--DVQEELIRALSSLCCGKGGLWEALGGRE  446 (2102)
T ss_pred             HhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhc-cchhhhhhhhccCCH--HHHHHHHHHHHHHhCCCHHHHHHHHHcC
Confidence                          000             1111 445556666666554  7899999999999998899999999999


Q ss_pred             ChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHH
Q 008257          306 AFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATAL  385 (572)
Q Consensus       306 ~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL  385 (572)
                      ++|.|+.+|.+.          ...+++.++++|.+++..   +.+++..++++|+||+|+++|+++ ++.+|++|+|+|
T Consensus       447 gIp~LV~LL~s~----------s~~iQ~~A~~~L~nLa~~---ndenr~aIieaGaIP~LV~LL~s~-~~~iqeeAawAL  512 (2102)
T PLN03200        447 GVQLLISLLGLS----------SEQQQEYAVALLAILTDE---VDESKWAITAAGGIPPLVQLLETG-SQKAKEDSATVL  512 (2102)
T ss_pred             cHHHHHHHHcCC----------CHHHHHHHHHHHHHHHcC---CHHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHH
Confidence            999999999862          345688999999999863   788899999999999999999998 999999999999


Q ss_pred             HHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHH
Q 008257          386 ENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLA  465 (572)
Q Consensus       386 ~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~  465 (572)
                      .|++.+..+                                        .+.++.++|+|+||+++|++++.++++.|++
T Consensus       513 ~NLa~~~~q----------------------------------------ir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~  552 (2102)
T PLN03200        513 WNLCCHSED----------------------------------------IRACVESAGAVPALLWLLKNGGPKGQEIAAK  552 (2102)
T ss_pred             HHHhCCcHH----------------------------------------HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHH
Confidence            999864321                                        1223447899999999999999999999999


Q ss_pred             HHHHhhhcCccc----------------hh------------------hHHHHHhcCChHHHHHHHhhcCCHHHHHHHHH
Q 008257          466 ALSTVIDDGVDI----------------EQ------------------GVMVLCEAQGIKPILDVLLEKRTENLQRRAVW  511 (572)
Q Consensus       466 aL~~l~~~~~~~----------------~~------------------~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~  511 (572)
                      +|++|..++...                +.                  ........||++.|+++| .++++.+|+.|+|
T Consensus       553 AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL-~sgs~~ikk~Aa~  631 (2102)
T PLN03200        553 TLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLL-SSSKEETQEKAAS  631 (2102)
T ss_pred             HHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHH-cCCCHHHHHHHHH
Confidence            999996432210                00                  011122479999999999 5999999999999


Q ss_pred             HHHHHHcc-hhhhhhhcCCCCchHHHHHHhhcCCchhHHHHHHHHHhhccc
Q 008257          512 VVERILRT-DDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHIDKI  561 (572)
Q Consensus       512 ~l~~l~~~-~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~  561 (572)
                      +|.+++.. .+....+...++++ +|+.+|++++.++++.|+|||.+|+..
T Consensus       632 iLsnL~a~~~d~~~avv~agaIp-PLV~LLss~~~~v~keAA~AL~nL~~~  681 (2102)
T PLN03200        632 VLADIFSSRQDLCESLATDEIIN-PCIKLLTNNTEAVATQSARALAALSRS  681 (2102)
T ss_pred             HHHHHhcCChHHHHHHHHcCCHH-HHHHHHhcCChHHHHHHHHHHHHHHhC
Confidence            99999954 66666777777776 999999999999999999999999963

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=5e-49  Score=452.88  Aligned_cols=492  Identities=17%  Similarity=0.218  Sum_probs=402.1

Q ss_pred             CHHHHHHHHHHHHhhccCcchH-HHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhcc-CcchhHHHHhhhH-HHHHHh
Q 008257            8 NLLTVEKAEKTLANLEKCENNV-RQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLAL-NSDVKVLVARTVG-SCLINI   84 (572)
Q Consensus         8 ~~~~~~~A~~~L~~L~~~~~n~-~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~-~~~~k~~i~~~g~-~~Lv~l   84 (572)
                      |..+++.|..+|.+|+.+++|+ ..++++|++++|+.+|+++++..|.+|+++|.+++. .++.+..+.+.|+ |.||++
T Consensus       160 d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~L  239 (2102)
T PLN03200        160 DKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKL  239 (2102)
T ss_pred             hHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHH
Confidence            4456777889999999988876 567899999999999999999999999999998887 4668888888888 999999


Q ss_pred             cccC-CHHHHHHHHHHHHHhhcC-CCcHHHHHHcCChHHHHHHHhccCCC----CCCcchHHHHHHHHHHHHhcCCC---
Q 008257           85 MKSG-NMQAREAALKALNQISSC-EPSAKVLIHAGILPPLVKDLFTVGSN----HLPMRLKEVSATILANVVNSGHD---  155 (572)
Q Consensus        85 L~s~-~~~~~~~A~~aL~~Ls~~-~~~~~~iv~~G~i~~Lv~lL~s~~~~----~~~~~~~~~aa~~L~nla~~~~~---  155 (572)
                      |+++ ++.+|+.|+++|++|+++ +++++.++++||||+|++++.++..+    ..+..++++|+|+|+||+.+...   
T Consensus       240 L~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~  319 (2102)
T PLN03200        240 LGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALIL  319 (2102)
T ss_pred             HccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHH
Confidence            9875 568999999999999985 56789999999999999999754200    01246799999999999874211   


Q ss_pred             --------CCc-------------------------cccCCC------------c-----------------------cc
Q 008257          156 --------FDS-------------------------ITVGPD------------N-----------------------QT  167 (572)
Q Consensus       156 --------~~~-------------------------~~~~~~------------~-----------------------~~  167 (572)
                              .+.                         ..++..            .                       +.
T Consensus       320 ~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~  399 (2102)
T PLN03200        320 YLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRK  399 (2102)
T ss_pred             HHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHH
Confidence                    000                         000000            0                       01


Q ss_pred             cchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 008257          168 LVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPH  247 (572)
Q Consensus       168 l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~  247 (572)
                      +...++++.|++||...+.++|.+++++|.+++.++.   +.+..|.+.|++|.|+++|.+++..+|+.|+++|++++.+
T Consensus       400 L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~---e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~  476 (2102)
T PLN03200        400 LNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKG---GLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDE  476 (2102)
T ss_pred             HHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCH---HHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            2234667788888888899999999999999998864   5788999999999999999999999999999999999976


Q ss_pred             CChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcc
Q 008257          248 MGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRF  327 (572)
Q Consensus       248 ~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~  327 (572)
                      .. +....+.+. |+||.|+++|.+++.  +++..|+|+|+|++.++++++..+.++|++|+|+++|++.          
T Consensus       477 nd-enr~aIiea-GaIP~LV~LL~s~~~--~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sg----------  542 (2102)
T PLN03200        477 VD-ESKWAITAA-GGIPPLVQLLETGSQ--KAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNG----------  542 (2102)
T ss_pred             CH-HHHHHHHHC-CCHHHHHHHHcCCCH--HHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCC----------
Confidence            43 333467777 999999999999886  8999999999999997777766666899999999999862          


Q ss_pred             hhhHHHHHHHHHHHHhccCCCChH---------------HHH---------------------HHHHcCchHHHHHHhcc
Q 008257          328 VTPFLEGLLSVLARVTFVLSDEPD---------------AIA---------------------LCCEHNLAALFIELLQS  371 (572)
Q Consensus       328 ~~~~~e~a~~aL~~l~~~~~~~~~---------------~~~---------------------~i~~~g~i~~Lv~lL~~  371 (572)
                      ....++.++++|.+++..  .+.+               .+.                     .....|++|.|++||++
T Consensus       543 d~~~q~~Aa~AL~nLi~~--~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~s  620 (2102)
T PLN03200        543 GPKGQEIAAKTLTKLVRT--ADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSS  620 (2102)
T ss_pred             CHHHHHHHHHHHHHHHhc--cchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcC
Confidence            245578899999998642  1221               111                     11246899999999999


Q ss_pred             CCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHh
Q 008257          372 NGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIAL  451 (572)
Q Consensus       372 ~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~l  451 (572)
                      + ++.+|+.|+|+|.+++.......                                        -.++..|+||||+.+
T Consensus       621 g-s~~ikk~Aa~iLsnL~a~~~d~~----------------------------------------~avv~agaIpPLV~L  659 (2102)
T PLN03200        621 S-KEETQEKAASVLADIFSSRQDLC----------------------------------------ESLATDEIINPCIKL  659 (2102)
T ss_pred             C-CHHHHHHHHHHHHHHhcCChHHH----------------------------------------HHHHHcCCHHHHHHH
Confidence            9 99999999999999976432211                                        126789999999999


Q ss_pred             hcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcchhhhhhhcCCCC
Q 008257          452 LDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPN  531 (572)
Q Consensus       452 L~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~  531 (572)
                      |++++.+++..|++||.+++....  +++...+.+.|+|++|+++| .+++..+++.|+.+|++++.+.+.+.++...++
T Consensus       660 Lss~~~~v~keAA~AL~nL~~~~~--~~q~~~~v~~GaV~pL~~LL-~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~  736 (2102)
T PLN03200        660 LTNNTEAVATQSARALAALSRSIK--ENRKVSYAAEDAIKPLIKLA-KSSSIEVAEQAVCALANLLSDPEVAAEALAEDI  736 (2102)
T ss_pred             HhcCChHHHHHHHHHHHHHHhCCC--HHHHHHHHHcCCHHHHHHHH-hCCChHHHHHHHHHHHHHHcCchHHHHHHhcCc
Confidence            999999999999999999996442  23445678999999999999 589999999999999999999888988887777


Q ss_pred             chHHHHHHhhcCCchhHHHHHHHHHhhcccCC
Q 008257          532 VSTALVDAFQHADYRTRQIAERALKHIDKIPN  563 (572)
Q Consensus       532 ~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~  563 (572)
                      ++ +|+++|++|+++.|+.|++||.+|++--.
T Consensus       737 I~-~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~  767 (2102)
T PLN03200        737 IL-PLTRVLREGTLEGKRNAARALAQLLKHFP  767 (2102)
T ss_pred             HH-HHHHHHHhCChHHHHHHHHHHHHHHhCCC
Confidence            75 99999999999999999999999997433

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.9e-42  Score=346.72  Aligned_cols=404  Identities=17%  Similarity=0.241  Sum_probs=345.0

Q ss_pred             CCCCCCHHHHHHHHHHHHhhccCcch--HHHHHHcCCcHHHHHHHcc-CCHHHHHHHHHHHHHhcc-CcchhHHHHhhhH
Q 008257            3 SSKSENLLTVEKAEKTLANLEKCENN--VRQMAENGRLQPLLTQILE-GPQETKLSLAAFLGDLAL-NSDVKVLVARTVG   78 (572)
Q Consensus         3 ~~~s~~~~~~~~A~~~L~~L~~~~~n--~~~i~~~g~i~~Lv~~L~~-~~~~~~~~aa~~L~~l~~-~~~~k~~i~~~g~   78 (572)
                      |..|+|+..+..|...++.|-+.+.|  +..+...|.++.||..|.. .++..|.+|||+|.+++. +.+..+.+.+.|+
T Consensus        74 ~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~aga  153 (514)
T KOG0166|consen   74 ALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGA  153 (514)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCc
Confidence            56789999888888888888765443  6777777999999999974 459999999999999998 6778888888888


Q ss_pred             -HHHHHhcccCCHHHHHHHHHHHHHhhcCCCc-HHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCC
Q 008257           79 -SCLINIMKSGNMQAREAALKALNQISSCEPS-AKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDF  156 (572)
Q Consensus        79 -~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~-~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~  156 (572)
                       |.|+.+|.|++.++++.|+|||.|++.+.+. |+.++++|+++||+.++....    +..+..+++|+|.|||.+....
T Consensus       154 vp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~----~~~~lRn~tW~LsNlcrgk~P~  229 (514)
T KOG0166|consen  154 VPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSD----KLSMLRNATWTLSNLCRGKNPS  229 (514)
T ss_pred             hHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhcccc----chHHHHHHHHHHHHHHcCCCCC
Confidence             9999999999999999999999999998655 777889999999999997642    2468889999999999865311


Q ss_pred             CccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHH
Q 008257          157 DSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLA  236 (572)
Q Consensus       157 ~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~  236 (572)
                                                   |++                  +.+      ...+|.|..++.+.|+++...
T Consensus       230 -----------------------------P~~------------------~~v------~~iLp~L~~ll~~~D~~Vl~D  256 (514)
T KOG0166|consen  230 -----------------------------PPF------------------DVV------APILPALLRLLHSTDEEVLTD  256 (514)
T ss_pred             -----------------------------CcH------------------HHH------HHHHHHHHHHHhcCCHHHHHH
Confidence                                         111                  011      347999999999999999999


Q ss_pred             HHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhh
Q 008257          237 SIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKS  316 (572)
Q Consensus       237 a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~  316 (572)
                      |+|++++|+++.++.+ +.+.+. |.++.||.+|.+++.  .++.+|+++++|++.+++..++.++++|++|.|..++..
T Consensus       257 a~WAlsyLsdg~ne~i-q~vi~~-gvv~~LV~lL~~~~~--~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~  332 (514)
T KOG0166|consen  257 ACWALSYLTDGSNEKI-QMVIDA-GVVPRLVDLLGHSSP--KVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSS  332 (514)
T ss_pred             HHHHHHHHhcCChHHH-HHHHHc-cchHHHHHHHcCCCc--ccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhcc
Confidence            9999999999866555 566776 999999999999986  788999999999999999999999999999999999985


Q ss_pred             hccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccC
Q 008257          317 IQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLT  396 (572)
Q Consensus       317 ~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~  396 (572)
                      ..         ...+++.|+|+++|++.+   ++++.+.++++|++|.|+.+|.++ ..+.|++||||+.|++.+..   
T Consensus       333 s~---------~~~ikkEAcW~iSNItAG---~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts~g~---  396 (514)
T KOG0166|consen  333 SP---------KESIKKEACWTISNITAG---NQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTSSGT---  396 (514)
T ss_pred             Cc---------chhHHHHHHHHHHHhhcC---CHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcccCC---
Confidence            22         233567799999999985   999999999999999999999999 89999999999999875432   


Q ss_pred             CCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCcc
Q 008257          397 KLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVD  476 (572)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~  476 (572)
                                                          .+...++++.|+|+||+.+|.-.+.++...++.+|.++...++.
T Consensus       397 ------------------------------------~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~  440 (514)
T KOG0166|consen  397 ------------------------------------PEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEA  440 (514)
T ss_pred             ------------------------------------HHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHH
Confidence                                                13445799999999999999999999999999999999976652


Q ss_pred             c-----hhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcch
Q 008257          477 I-----EQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTD  520 (572)
Q Consensus       477 ~-----~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~~  520 (572)
                      .     ......|.++||+..+ +.|+.|.+++++++|..++.+++..+
T Consensus       441 ~~~~~~n~~~~~IEe~ggldki-E~LQ~hen~~Iy~~A~~II~~yf~~e  488 (514)
T KOG0166|consen  441 EKNRGTNPLAIMIEEAGGLDKI-ENLQSHENEEIYKKAYKIIDTYFSEE  488 (514)
T ss_pred             hccccccHHHHHHHHccChhHH-HHhhccccHHHHHHHHHHHHHhcCCC
Confidence            2     2356889999999999 56668999999999999999999653

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=7.9e-41  Score=314.86  Aligned_cols=406  Identities=18%  Similarity=0.212  Sum_probs=336.6

Q ss_pred             CCCCCHHHHHHHHHHHHhhccC--cchHHHHHHcCCcHHHHHHHc-cCCHHHHHHHHHHHHHhcc-CcchhHHHHhhhH-
Q 008257            4 SKSENLLTVEKAEKTLANLEKC--ENNVRQMAENGRLQPLLTQIL-EGPQETKLSLAAFLGDLAL-NSDVKVLVARTVG-   78 (572)
Q Consensus         4 ~~s~~~~~~~~A~~~L~~L~~~--~~n~~~i~~~g~i~~Lv~~L~-~~~~~~~~~aa~~L~~l~~-~~~~k~~i~~~g~-   78 (572)
                      +.|+|.+.+..|..-.+.+-+.  ..-+..++++|++|.++.+|. ..+...+.+|||+|.|++. .....+.+.+.|+ 
T Consensus        80 l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AV  159 (526)
T COG5064          80 LFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAV  159 (526)
T ss_pred             HhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCch
Confidence            5688999888888777666443  334788999999999999994 5567789999999999998 4455566677888 


Q ss_pred             HHHHHhcccCCHHHHHHHHHHHHHhhcCCCc-HHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCC
Q 008257           79 SCLINIMKSGNMQAREAALKALNQISSCEPS-AKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFD  157 (572)
Q Consensus        79 ~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~-~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~  157 (572)
                      |.+|+||.+.+.++++.|+|||.|++.+.+. |+.+.++|++.|++.+|.+..   ....+-.++.|+|.||+.......
T Consensus       160 PlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~---~~ismlRn~TWtLSNlcRGknP~P  236 (526)
T COG5064         160 PLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSA---IHISMLRNATWTLSNLCRGKNPPP  236 (526)
T ss_pred             HHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhcc---chHHHHHHhHHHHHHhhCCCCCCC
Confidence            9999999999999999999999999998665 667779999999999998653   225778899999999987543211


Q ss_pred             ccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHH
Q 008257          158 SITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLAS  237 (572)
Q Consensus       158 ~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a  237 (572)
                                                   +.                      ..|  ..++|.|.+|+.+.|+++...|
T Consensus       237 -----------------------------~w----------------------~~i--sqalpiL~KLiys~D~evlvDA  263 (526)
T COG5064         237 -----------------------------DW----------------------SNI--SQALPILAKLIYSRDPEVLVDA  263 (526)
T ss_pred             -----------------------------ch----------------------HHH--HHHHHHHHHHHhhcCHHHHHHH
Confidence                                         11                      111  2368999999999999999999


Q ss_pred             HHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhh
Q 008257          238 IELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSI  317 (572)
Q Consensus       238 ~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~  317 (572)
                      +|++++|+++..+. .+.+... |..+.||++|.+++.  .++.+|++.++|+..+++..++.++++|+++.+..+|.+.
T Consensus       264 ~WAiSYlsDg~~E~-i~avld~-g~~~RLvElLs~~sa--~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~  339 (526)
T COG5064         264 CWAISYLSDGPNEK-IQAVLDV-GIPGRLVELLSHESA--KIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSP  339 (526)
T ss_pred             HHHHHHhccCcHHH-HHHHHhc-CCcHHHHHHhcCccc--cccCHHHHhhcCeeecCccceehheecccHHHHHHHhcCh
Confidence            99999999885444 4567766 999999999999986  8899999999999999988989999999999999999874


Q ss_pred             ccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCC
Q 008257          318 QLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTK  397 (572)
Q Consensus       318 ~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~  397 (572)
                      +          +.++..+.|.+.+++.+   +.++.+.+++++.+|+|+++|.+. ...+|++|+||+.|......+.- 
T Consensus       340 k----------e~irKEaCWTiSNITAG---nteqiqavid~nliPpLi~lls~a-e~k~kKEACWAisNatsgg~~~P-  404 (526)
T COG5064         340 K----------ENIRKEACWTISNITAG---NTEQIQAVIDANLIPPLIHLLSSA-EYKIKKEACWAISNATSGGLNRP-  404 (526)
T ss_pred             h----------hhhhhhhheeecccccC---CHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHhhhccccCCc-
Confidence            3          23466799999999985   899999999999999999999998 99999999999999875443211 


Q ss_pred             CCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCc--
Q 008257          398 LPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGV--  475 (572)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~--  475 (572)
                                                          ...-++++.|+|+||.++|...+.++.+.++.++.++..-++  
T Consensus       405 ------------------------------------D~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d  448 (526)
T COG5064         405 ------------------------------------DIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQD  448 (526)
T ss_pred             ------------------------------------hHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHH
Confidence                                                122358899999999999999999999999999999986554  


Q ss_pred             ------cchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcchh
Q 008257          476 ------DIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDD  521 (572)
Q Consensus       476 ------~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~~~  521 (572)
                            +.......+.++||+..+..+- .+.+.++..+|-.+++++|..++
T Consensus       449 ~~~~~~nin~ya~~vE~Aggmd~I~~~Q-~s~n~~iy~KAYsIIe~fFgeeD  499 (526)
T COG5064         449 RLRYGKNINIYAVYVEKAGGMDAIHGLQ-DSVNRTIYDKAYSIIEKFFGEED  499 (526)
T ss_pred             HHhccCCccHHHHHHHhcccHHHHHHhh-hccccHHHHHHHHHHHHHcccch
Confidence                  1223356677799999998877 69999999999999999996543

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.1e-41  Score=319.31  Aligned_cols=428  Identities=20%  Similarity=0.234  Sum_probs=359.6

Q ss_pred             CCCCCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhH-HHH
Q 008257            3 SSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVG-SCL   81 (572)
Q Consensus         3 ~~~s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~L   81 (572)
                      .++|.|+.+++.|..++.||+.+-+|+-.+++-+++++|+.-+.....++|+.+..++++++..+++|..|+..|+ .+|
T Consensus        93 llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~kiA~sGaL~pl  172 (550)
T KOG4224|consen   93 LLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVKIARSGALEPL  172 (550)
T ss_pred             HHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhhhhhccchhhh
Confidence            3688999999999999999999999999999999999999988888889999999999999999999999999999 999


Q ss_pred             HHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCcccc
Q 008257           82 INIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITV  161 (572)
Q Consensus        82 v~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~  161 (572)
                      .++-++.+..+|.+|..+|.||+...+|++.+|.+|++|.||.+|++++     +++|+++..++.|++-...       
T Consensus       173 trLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d-----~dvqyycttaisnIaVd~~-------  240 (550)
T KOG4224|consen  173 TRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGD-----LDVQYYCTTAISNIAVDRR-------  240 (550)
T ss_pred             HhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCC-----hhHHHHHHHHhhhhhhhHH-------
Confidence            9999999999999999999999999999999999999999999999863     8999999999999986432       


Q ss_pred             CCCccccchhh--hHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHH
Q 008257          162 GPDNQTLVSED--IVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIE  239 (572)
Q Consensus       162 ~~~~~~l~~~~--~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~  239 (572)
                        +++.+...+  .||.|++|++++++.+|.+|.-+|.+++++..    .+..|.++|++|.+|+||+++.-......+.
T Consensus       241 --~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~----Yq~eiv~ag~lP~lv~Llqs~~~plilasVa  314 (550)
T KOG4224|consen  241 --ARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTE----YQREIVEAGSLPLLVELLQSPMGPLILASVA  314 (550)
T ss_pred             --HHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccch----hhhHHHhcCCchHHHHHHhCcchhHHHHHHH
Confidence              224555555  99999999999999999999999999999975    3667889999999999999988777777788


Q ss_pred             HHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhcc
Q 008257          240 LIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQL  319 (572)
Q Consensus       240 ~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~  319 (572)
                      .++|++-+..++.  .|.+. |++.+||++|+-++. +++|..|+.+|+||+..+..++..+.++|+||.+..++.+.  
T Consensus       315 CIrnisihplNe~--lI~da-gfl~pLVrlL~~~dn-EeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~--  388 (550)
T KOG4224|consen  315 CIRNISIHPLNEV--LIADA-GFLRPLVRLLRAGDN-EEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDG--  388 (550)
T ss_pred             HHhhcccccCccc--ceecc-cchhHHHHHHhcCCc-hhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcC--
Confidence            9999998876664  46666 999999999998885 57999999999999997888889999999999999999873  


Q ss_pred             CCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCC
Q 008257          320 GETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLP  399 (572)
Q Consensus       320 ~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~  399 (572)
                              ..++++..-+++..++    -+.+.+..+.+.|++|.|+.++.+. +.+++-+||.||.|++.+..+.++..
T Consensus       389 --------pvsvqseisac~a~La----l~d~~k~~lld~gi~~iLIp~t~s~-s~Ev~gNaAaAL~Nlss~v~~Yarvi  455 (550)
T KOG4224|consen  389 --------PVSVQSEISACIAQLA----LNDNDKEALLDSGIIPILIPWTGSE-SEEVRGNAAAALINLSSDVEHYARVI  455 (550)
T ss_pred             --------ChhHHHHHHHHHHHHH----hccccHHHHhhcCCcceeecccCcc-chhhcccHHHHHHhhhhhhHHHHHHH
Confidence                    2345666777777777    3677788999999999999999998 99999999999999998777665531


Q ss_pred             CCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchh
Q 008257          400 ELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQ  479 (572)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~  479 (572)
                      +            +.           -|.            ..|.-..|+++|.+.+.-+...+.+++..|..++.    
T Consensus       456 E------------aw-----------d~P------------~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h~----  496 (550)
T KOG4224|consen  456 E------------AW-----------DHP------------VQGIQGRLARFLASHELTFRHIARWTIQQLLEDHD----  496 (550)
T ss_pred             H------------Hh-----------cCc------------chhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCC----
Confidence            1            10           000            12233478999999888888889998888886543    


Q ss_pred             hHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcc
Q 008257          480 GVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRT  519 (572)
Q Consensus       480 ~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~  519 (572)
                                 +++..+++ +.| ++-+.+-.++++..++
T Consensus       497 -----------~~~~~~i~-~~d-dii~~~~~~~~r~~~~  523 (550)
T KOG4224|consen  497 -----------LPLTAFIQ-SSD-DIIELLNDIVARDANN  523 (550)
T ss_pred             -----------ccHHHHHh-Cch-hHHHHHHHHHHHhccC
Confidence                       44556664 333 3335555566666544

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.9e-35  Score=296.52  Aligned_cols=405  Identities=15%  Similarity=0.187  Sum_probs=338.6

Q ss_pred             HHHHHHhcccCCHHHHHHHHHHHHHhhcCCCc--HHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCC
Q 008257           78 GSCLINIMKSGNMQAREAALKALNQISSCEPS--AKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHD  155 (572)
Q Consensus        78 ~~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~--~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~  155 (572)
                      .+.++..+.|+++..|..+...++.|.+.+.+  ....+..|.||.||..|...    .++.+|..|||+|.|+|+++..
T Consensus        68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~----~~~~lq~eAAWaLTnIAsgtse  143 (514)
T KOG0166|consen   68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRD----DNPTLQFEAAWALTNIASGTSE  143 (514)
T ss_pred             hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccC----CChhHHHHHHHHHHHHhcCchh
Confidence            58899999999999999999999999986554  56666779999999999753    3488999999999999987654


Q ss_pred             CCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCH-HHH
Q 008257          156 FDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQN-DLR  234 (572)
Q Consensus       156 ~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~v~  234 (572)
                      ..        +.++..|++|.|+.|+.+++.+++++|+|+|.+++.++.   ..|..+.++|++++|+.++...+. ...
T Consensus       144 ~T--------~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~---~~Rd~vl~~g~l~pLl~~l~~~~~~~~l  212 (514)
T KOG0166|consen  144 QT--------KVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSP---DCRDYVLSCGALDPLLRLLNKSDKLSML  212 (514)
T ss_pred             hc--------cccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCCh---HHHHHHHhhcchHHHHHHhccccchHHH
Confidence            43        356778999999999999999999999999999999874   689999999999999999988875 789


Q ss_pred             HHHHHHHHHcCCCC-ChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHH
Q 008257          235 LASIELIQNLSPHM-GHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSR  313 (572)
Q Consensus       235 ~~a~~~L~~Ls~~~-~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~l  313 (572)
                      +++.|+|+||+++. +..-.+.+.   .++|.|..++.+.+.  ++...|.|+|++|+.+.++..+++++.|++|.|+.+
T Consensus       213 Rn~tW~LsNlcrgk~P~P~~~~v~---~iLp~L~~ll~~~D~--~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~l  287 (514)
T KOG0166|consen  213 RNATWTLSNLCRGKNPSPPFDVVA---PILPALLRLLHSTDE--EVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDL  287 (514)
T ss_pred             HHHHHHHHHHHcCCCCCCcHHHHH---HHHHHHHHHHhcCCH--HHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHH
Confidence            99999999999774 222223444   479999999999996  899999999999999999999999999999999999


Q ss_pred             HhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhcc
Q 008257          314 VKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESK  393 (572)
Q Consensus       314 L~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~  393 (572)
                      |.+..          ..++-.|+.++.+++.+   +..+.+.+++.|++|.|..+|...+.+.+|++|+|++.|+.....
T Consensus       288 L~~~~----------~~v~~PaLRaiGNIvtG---~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~  354 (514)
T KOG0166|consen  288 LGHSS----------PKVVTPALRAIGNIVTG---SDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQ  354 (514)
T ss_pred             HcCCC----------cccccHHHhhccceeec---cHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCH
Confidence            98732          22345799999999875   778888899999999999999954377799999999999976433


Q ss_pred             ccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhc
Q 008257          394 NLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDD  473 (572)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~  473 (572)
                      .                                        +.-+++++|.+|+|+++|++++-+++..|++|++|++..
T Consensus       355 ~----------------------------------------qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~  394 (514)
T KOG0166|consen  355 E----------------------------------------QIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSS  394 (514)
T ss_pred             H----------------------------------------HHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhccc
Confidence            2                                        222478999999999999999999999999999999987


Q ss_pred             CccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcchhh---------hhhhcCCCCchHHHHHHhhc-C
Q 008257          474 GVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDI---------AYEVSGDPNVSTALVDAFQH-A  543 (572)
Q Consensus       474 ~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~~~~---------~~~~~~~~~~~~~Lv~ll~~-~  543 (572)
                      +.  .+....+++.|.|+++..+| .-.|..+...+..+|++|+...+.         ...+...+|+.  -++-|++ .
T Consensus       395 g~--~~qi~yLv~~giI~plcdlL-~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggld--kiE~LQ~he  469 (514)
T KOG0166|consen  395 GT--PEQIKYLVEQGIIKPLCDLL-TCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLD--KIENLQSHE  469 (514)
T ss_pred             CC--HHHHHHHHHcCCchhhhhcc-cCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChh--HHHHhhccc
Confidence            65  45678999999999999999 688988889999999999866332         23455566664  5555654 5


Q ss_pred             CchhHHHHHHHHHhhcc
Q 008257          544 DYRTRQIAERALKHIDK  560 (572)
Q Consensus       544 ~~~~~~~Aa~aL~~L~~  560 (572)
                      +.++.++|-..+.+..-
T Consensus       470 n~~Iy~~A~~II~~yf~  486 (514)
T KOG0166|consen  470 NEEIYKKAYKIIDTYFS  486 (514)
T ss_pred             cHHHHHHHHHHHHHhcC
Confidence            56888888888877655

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.3e-36  Score=286.00  Aligned_cols=404  Identities=17%  Similarity=0.228  Sum_probs=341.0

Q ss_pred             CCcHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhH-HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHH
Q 008257           36 GRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVG-SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLI  114 (572)
Q Consensus        36 g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv  114 (572)
                      ..++|...++++.....|..+..++++++.+.++|..|.+.+| .+|+.-+.++..++|+++++|++||+..++|+..|.
T Consensus        85 es~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~kiA  164 (550)
T KOG4224|consen   85 ESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVKIA  164 (550)
T ss_pred             hhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhhhh
Confidence            3568888899999999999999999999999999999998877 777777777888999999999999999999999999


Q ss_pred             HcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHH
Q 008257          115 HAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQ  194 (572)
Q Consensus       115 ~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~  194 (572)
                      ..|++.||+++-++.+     ..+|+++..+|.|+..+.+         +++.++..|.+|.||.+++++++++|..+..
T Consensus       165 ~sGaL~pltrLakskd-----irvqrnatgaLlnmThs~E---------nRr~LV~aG~lpvLVsll~s~d~dvqyyctt  230 (550)
T KOG4224|consen  165 RSGALEPLTRLAKSKD-----IRVQRNATGALLNMTHSRE---------NRRVLVHAGGLPVLVSLLKSGDLDVQYYCTT  230 (550)
T ss_pred             hccchhhhHhhcccch-----hhHHHHHHHHHHHhhhhhh---------hhhhhhccCCchhhhhhhccCChhHHHHHHH
Confidence            9999999999776653     7899999999999987543         3457888999999999999999999999999


Q ss_pred             HHHHccCCCCccHHHHHHHHhcC--ChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhcc
Q 008257          195 VLVGLTSSPTTVLSVVSAIKSSG--ATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISE  272 (572)
Q Consensus       195 aL~~l~~~~~~~~~~~~~i~~~g--~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~  272 (572)
                      ++.+++-+.    ..|+.+.+.+  .+|.||.|+++++++++..|.-+|++|+.+.  +.+..+.+. |++|.+|++|++
T Consensus       231 aisnIaVd~----~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt--~Yq~eiv~a-g~lP~lv~Llqs  303 (550)
T KOG4224|consen  231 AISNIAVDR----RARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDT--EYQREIVEA-GSLPLLVELLQS  303 (550)
T ss_pred             HhhhhhhhH----HHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccc--hhhhHHHhc-CCchHHHHHHhC
Confidence            999999875    4578888888  9999999999999999999999999999774  344567777 999999999988


Q ss_pred             CCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHH
Q 008257          273 NVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDA  352 (572)
Q Consensus       273 ~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~  352 (572)
                      +..  ..-.+.+.+|.|++-+. -+.-.++++|++.+||.+|+..         .+++++-.|...|++++.+   ...+
T Consensus       304 ~~~--plilasVaCIrnisihp-lNe~lI~dagfl~pLVrlL~~~---------dnEeiqchAvstLrnLAas---se~n  368 (550)
T KOG4224|consen  304 PMG--PLILASVACIRNISIHP-LNEVLIADAGFLRPLVRLLRAG---------DNEEIQCHAVSTLRNLAAS---SEHN  368 (550)
T ss_pred             cch--hHHHHHHHHHhhccccc-CcccceecccchhHHHHHHhcC---------CchhhhhhHHHHHHHHhhh---hhhh
Confidence            874  66777888999998843 3436789999999999999862         3567788999999999963   7788


Q ss_pred             HHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccC
Q 008257          353 IALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCS  432 (572)
Q Consensus       353 ~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~  432 (572)
                      ++.+++.|+||.+.+|+.++ +..+|.+-..+++.++.+..+                                      
T Consensus       369 ~~~i~esgAi~kl~eL~lD~-pvsvqseisac~a~Lal~d~~--------------------------------------  409 (550)
T KOG4224|consen  369 VSVIRESGAIPKLIELLLDG-PVSVQSEISACIAQLALNDND--------------------------------------  409 (550)
T ss_pred             hHHHhhcCchHHHHHHHhcC-ChhHHHHHHHHHHHHHhcccc--------------------------------------
Confidence            89999999999999999998 888998888888888765431                                      


Q ss_pred             ccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHh-cCChH-HHHHHHhhcCCHHHHHHHH
Q 008257          433 LKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCE-AQGIK-PILDVLLEKRTENLQRRAV  510 (572)
Q Consensus       433 ~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~-~g~i~-~L~~lL~~~~~~~~~~~a~  510 (572)
                         .-++.+.|.++.|+.++.+.+++++..|+.||.||+.+-+++....+++-. .+||. .|+.++ .+.+-.++..+.
T Consensus       410 ---k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl-~S~~~tf~hia~  485 (550)
T KOG4224|consen  410 ---KEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLARFL-ASHELTFRHIAR  485 (550)
T ss_pred             ---HHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHH-hhhHHHHHHHHH
Confidence               224678999999999999999999999999999999875533322222211 25665 477888 477778888999


Q ss_pred             HHHHHHHc
Q 008257          511 WVVERILR  518 (572)
Q Consensus       511 ~~l~~l~~  518 (572)
                      |.+..+..
T Consensus       486 wTI~qLle  493 (550)
T KOG4224|consen  486 WTIQQLLE  493 (550)
T ss_pred             HHHHHHHH
Confidence            99988874

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=3.9e-35  Score=276.48  Aligned_cols=408  Identities=16%  Similarity=0.150  Sum_probs=337.9

Q ss_pred             hHHHHHHhcccCCHHHHHHHHHHHHHhhcCCCc--HHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCC
Q 008257           77 VGSCLINIMKSGNMQAREAALKALNQISSCEPS--AKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGH  154 (572)
Q Consensus        77 g~~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~--~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~  154 (572)
                      ..|.|.+-|.|++.+.|..|..-.+.+.+.+.+  .+.++++|.||.+|+++++.    ...-++-.|+|+|.|+++...
T Consensus        72 elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~----q~~mlqfEAaWalTNiaSGtt  147 (526)
T COG5064          72 ELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEI----QRDMLQFEAAWALTNIASGTT  147 (526)
T ss_pred             hhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhc----chhHHHHHHHHHHhhhccCcc
Confidence            349999999999999999999988888875444  68889999999999999653    235678899999999998766


Q ss_pred             CCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCH--H
Q 008257          155 DFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQN--D  232 (572)
Q Consensus       155 ~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~--~  232 (572)
                      .+.+        .++..|+||.+++||.++..+++++++|+|.+++.++.   ..|..+.++|++.+++.++.+.-.  .
T Consensus       148 ~QTk--------vVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~---~~RD~vL~~galeplL~ll~ss~~~is  216 (526)
T COG5064         148 QQTK--------VVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSE---GCRDYVLQCGALEPLLGLLLSSAIHIS  216 (526)
T ss_pred             cceE--------EEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCch---hHHHHHHhcCchHHHHHHHHhccchHH
Confidence            5443        45667899999999999999999999999999999875   589999999999999999987654  7


Q ss_pred             HHHHHHHHHHHcCCCC-ChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHH
Q 008257          233 LRLASIELIQNLSPHM-GHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIF  311 (572)
Q Consensus       233 v~~~a~~~L~~Ls~~~-~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv  311 (572)
                      +.+++.|+|+||+++. +..-...+.   .++|.|.+++.+.+.  ++-..|.|+|+.|+.+..+..+.+++.|..+.|+
T Consensus       217 mlRn~TWtLSNlcRGknP~P~w~~is---qalpiL~KLiys~D~--evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLv  291 (526)
T COG5064         217 MLRNATWTLSNLCRGKNPPPDWSNIS---QALPILAKLIYSRDP--EVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLV  291 (526)
T ss_pred             HHHHhHHHHHHhhCCCCCCCchHHHH---HHHHHHHHHHhhcCH--HHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHH
Confidence            8899999999999763 222223444   369999999999886  8999999999999999888889999999999999


Q ss_pred             HHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhh
Q 008257          312 SRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLE  391 (572)
Q Consensus       312 ~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~  391 (572)
                      .+|.+.          ...++..++..+.++..+   +....+.+++.|+++.|-.+|.++ .+.+|++|+|++.|+...
T Consensus       292 ElLs~~----------sa~iqtPalR~vGNIVTG---~D~QTqviI~~G~L~a~~~lLs~~-ke~irKEaCWTiSNITAG  357 (526)
T COG5064         292 ELLSHE----------SAKIQTPALRSVGNIVTG---SDDQTQVIINCGALKAFRSLLSSP-KENIRKEACWTISNITAG  357 (526)
T ss_pred             HHhcCc----------cccccCHHHHhhcCeeec---CccceehheecccHHHHHHHhcCh-hhhhhhhhheeecccccC
Confidence            999873          234466788889999875   555666789999999999999999 889999999999988643


Q ss_pred             ccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhh
Q 008257          392 SKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVI  471 (572)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~  471 (572)
                      ..                                        +...++++++.||||+++|++.+-.++..|++|+.|..
T Consensus       358 nt----------------------------------------eqiqavid~nliPpLi~lls~ae~k~kKEACWAisNat  397 (526)
T COG5064         358 NT----------------------------------------EQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNAT  397 (526)
T ss_pred             CH----------------------------------------HHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            21                                        23345889999999999999999999999999999999


Q ss_pred             hcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcch------------hhhhhhcCCCCchHHHHHH
Q 008257          472 DDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTD------------DIAYEVSGDPNVSTALVDA  539 (572)
Q Consensus       472 ~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~~------------~~~~~~~~~~~~~~~Lv~l  539 (572)
                      .++....+....+++.|.|++|..+| +-.+..+-+-++.+++++.+..            .+...+..++++. .+-++
T Consensus       398 sgg~~~PD~iryLv~qG~IkpLc~~L-~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd-~I~~~  475 (526)
T COG5064         398 SGGLNRPDIIRYLVSQGFIKPLCDLL-DVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMD-AIHGL  475 (526)
T ss_pred             ccccCCchHHHHHHHccchhHHHHHH-hccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHH-HHHHh
Confidence            87765556678899999999999999 5777777788899999998541            1223333355664 66677


Q ss_pred             hhcCCchhHHHHHHHHHhhcc
Q 008257          540 FQHADYRTRQIAERALKHIDK  560 (572)
Q Consensus       540 l~~~~~~~~~~Aa~aL~~L~~  560 (572)
                      -.+.+..+..+|=.++...+.
T Consensus       476 Q~s~n~~iy~KAYsIIe~fFg  496 (526)
T COG5064         476 QDSVNRTIYDKAYSIIEKFFG  496 (526)
T ss_pred             hhccccHHHHHHHHHHHHHcc
Confidence            778899999999999988763

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.96  E-value=2.2e-27  Score=255.12  Aligned_cols=385  Identities=19%  Similarity=0.236  Sum_probs=318.1

Q ss_pred             HHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhH-HHHHHhcccCC
Q 008257           11 TVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVG-SCLINIMKSGN   89 (572)
Q Consensus        11 ~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~Lv~lL~s~~   89 (572)
                      ..+.|..+|.||+.++.+...|++.|.+++|++.|.+++.++.+.++.+|.+|+...+||..+.+.|+ ++|++++.+++
T Consensus       265 Llrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~  344 (708)
T PF05804_consen  265 LLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSEN  344 (708)
T ss_pred             HHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCC
Confidence            55678899999999999999999999999999999999999999999999999999999999999999 99999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccc
Q 008257           90 MQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLV  169 (572)
Q Consensus        90 ~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~  169 (572)
                      .+.+..|+++|.|||.+++.+..|++.|.||.|+.+|..       +..+..+..+|++|+..+.         ....+.
T Consensus       345 ~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d-------~~~~~val~iLy~LS~dd~---------~r~~f~  408 (708)
T PF05804_consen  345 EDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKD-------PNFREVALKILYNLSMDDE---------ARSMFA  408 (708)
T ss_pred             HHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCC-------CchHHHHHHHHHHhccCHh---------hHHHHh
Confidence            999999999999999999999999999999999999974       4567889999999987543         223567


Q ss_pred             hhhhHHHHHHHHhc-CChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCC
Q 008257          170 SEDIVHNLLHLISN-TGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHM  248 (572)
Q Consensus       170 ~~~~i~~Lv~lL~~-~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~  248 (572)
                      ..++||.+++++-+ +.++++..++..+.+++.++.    +.+.|.+.||++.|++..-.....   ..+++++|+|.|+
T Consensus       409 ~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~r----naqlm~~g~gL~~L~~ra~~~~D~---lLlKlIRNiS~h~  481 (708)
T PF05804_consen  409 YTDCIPQLMQMLLENSEEEVQLELIALLINLALNKR----NAQLMCEGNGLQSLMKRALKTRDP---LLLKLIRNISQHD  481 (708)
T ss_pred             hcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHH----HHHHHHhcCcHHHHHHHHHhcccH---HHHHHHHHHHhcC
Confidence            77899999998764 667788889999999999974    456788899999999987554332   2457999999987


Q ss_pred             ChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcch
Q 008257          249 GHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFV  328 (572)
Q Consensus       249 ~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~  328 (572)
                      +.. ...+.   +.+..|++++.++++ .+....++|+|+||+..+....+.+.+.+.+|.|.++|....        ..
T Consensus       482 ~~~-k~~f~---~~i~~L~~~v~~~~~-ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~--------~~  548 (708)
T PF05804_consen  482 GPL-KELFV---DFIGDLAKIVSSGDS-EEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGA--------SE  548 (708)
T ss_pred             chH-HHHHH---HHHHHHHHHhhcCCc-HHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCC--------CC
Confidence            543 23333   479999999988775 689999999999999877677667778899999999997521        12


Q ss_pred             hhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccC-CcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCC
Q 008257          329 TPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSN-GLDKVQMVSATALENLSLESKNLTKLPELPPSGFC  407 (572)
Q Consensus       329 ~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~  407 (572)
                      ..++-.++..++.++    .|+.....+.+.|+++.|+++|+.. .+++...+.+.++..+..+....            
T Consensus       549 dDl~LE~Vi~~gtla----~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr------------  612 (708)
T PF05804_consen  549 DDLLLEVVILLGTLA----SDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETR------------  612 (708)
T ss_pred             hHHHHHHHHHHHHHH----CCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHH------------
Confidence            233334566666666    5999999999999999999999985 36788888888888887653211            


Q ss_pred             ccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCc
Q 008257          408 ASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGV  475 (572)
Q Consensus       408 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~  475 (572)
                                                  .+-+-+.+++.-|++++++.|+.++..+=.+|-.++..++
T Consensus       613 ----------------------------~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~  652 (708)
T PF05804_consen  613 ----------------------------EVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDE  652 (708)
T ss_pred             ----------------------------HHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCH
Confidence                                        1113357788999999999999999999999998887654

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.95  E-value=9.7e-25  Score=234.76  Aligned_cols=466  Identities=17%  Similarity=0.231  Sum_probs=347.5

Q ss_pred             CCHHHHHHHHHHHHhhccCcchHHHHHHc-CCcHHHHHHHccC---CHHHHHHHHHHHHHhcc-----------------
Q 008257            7 ENLLTVEKAEKTLANLEKCENNVRQMAEN-GRLQPLLTQILEG---PQETKLSLAAFLGDLAL-----------------   65 (572)
Q Consensus         7 ~~~~~~~~A~~~L~~L~~~~~n~~~i~~~-g~i~~Lv~~L~~~---~~~~~~~aa~~L~~l~~-----------------   65 (572)
                      +|.....++...+..|+.+++|-..++.. -.+..|.+.|++.   +.+.-.+-......++.                 
T Consensus       134 e~~~ek~~~~~~il~La~~~~NL~~l~~ne~l~~aL~RvLred~~ks~~l~tnI~~iF~~fS~f~~fH~~l~~~kiG~l~  213 (708)
T PF05804_consen  134 EDIPEKIRGTSLILQLARNPENLEELVQNETLMSALARVLREDWKKSVELATNIIYIFFCFSNFSQFHPILAHYKIGSLC  213 (708)
T ss_pred             cccHHHHHHHHHHHHHhCCcchHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHhccHHHHH
Confidence            45445677889999999999998887744 4566666777542   22222221111111111                 


Q ss_pred             ----CcchhH-H-----HHh----------------hhHHHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCCh
Q 008257           66 ----NSDVKV-L-----VAR----------------TVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGIL  119 (572)
Q Consensus        66 ----~~~~k~-~-----i~~----------------~g~~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i  119 (572)
                          +.+.|+ .     +.+                ..-+.+-.+++.. ......|...|.||+.+..+...|++.|+|
T Consensus       214 m~iie~Elkr~~~w~~~l~~~~~~~~~~~~~~~~~~~~~kk~~~l~~kQ-eqLlrv~~~lLlNLAed~~ve~kM~~~~iV  292 (708)
T PF05804_consen  214 MEIIEHELKRHDLWQEELRKKKKAAEEKPEAKKDYEKELKKLQTLIRKQ-EQLLRVAFYLLLNLAEDPRVELKMVNKGIV  292 (708)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcChHHHHHHHhcCCH
Confidence                111111 0     000                0012223333322 233457888999999999999999999999


Q ss_pred             HHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHc
Q 008257          120 PPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGL  199 (572)
Q Consensus       120 ~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l  199 (572)
                      ++|+++|++.+     .++...++..|.+|+....+         ...+...|+|+.|++++.++..+++..++++|+||
T Consensus       293 ~~Lv~~Ldr~n-----~ellil~v~fLkkLSi~~EN---------K~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NL  358 (708)
T PF05804_consen  293 SLLVKCLDREN-----EELLILAVTFLKKLSIFKEN---------KDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNL  358 (708)
T ss_pred             HHHHHHHcCCC-----HHHHHHHHHHHHHHcCCHHH---------HHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence            99999998753     78999999999999865432         24577889999999999999999999999999999


Q ss_pred             cCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHH
Q 008257          200 TSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKE  279 (572)
Q Consensus       200 ~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~  279 (572)
                      +.++    ++|..|++.|.+|.|+.+|..++  .+..++.+|.+||.++.  ....+..+ +++|.|+++|.+.++ ..+
T Consensus       359 Sfd~----~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~--~r~~f~~T-dcIp~L~~~Ll~~~~-~~v  428 (708)
T PF05804_consen  359 SFDP----ELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDE--ARSMFAYT-DCIPQLMQMLLENSE-EEV  428 (708)
T ss_pred             CcCH----HHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHh--hHHHHhhc-chHHHHHHHHHhCCC-ccc
Confidence            9996    57999999999999999997654  66789999999997642  22355665 899999998866543 366


Q ss_pred             HHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHc
Q 008257          280 QAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEH  359 (572)
Q Consensus       280 ~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~  359 (572)
                      ...+++++.||+. ++.+.+.+++.|+++.|+...-..+         + +   -.+..+.+++.+   ++..+..+.  
T Consensus       429 ~~eliaL~iNLa~-~~rnaqlm~~g~gL~~L~~ra~~~~---------D-~---lLlKlIRNiS~h---~~~~k~~f~--  489 (708)
T PF05804_consen  429 QLELIALLINLAL-NKRNAQLMCEGNGLQSLMKRALKTR---------D-P---LLLKLIRNISQH---DGPLKELFV--  489 (708)
T ss_pred             cHHHHHHHHHHhc-CHHHHHHHHhcCcHHHHHHHHHhcc---------c-H---HHHHHHHHHHhc---CchHHHHHH--
Confidence            7778899999998 6677789999999999998765411         1 1   244567788864   445555554  


Q ss_pred             CchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhh
Q 008257          360 NLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCL  439 (572)
Q Consensus       360 g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l  439 (572)
                      +.+..|+.++..+.+++...++..+|+|+...+.++.+                                        .+
T Consensus       490 ~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~----------------------------------------ll  529 (708)
T PF05804_consen  490 DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQ----------------------------------------LL  529 (708)
T ss_pred             HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHH----------------------------------------HH
Confidence            47888899998876888999999999998754322211                                        13


Q ss_pred             hhccchHHHHHhhcC--CCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcC-CHHHHHHHHHHHHHH
Q 008257          440 LEGHAVEKLIALLDH--TNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKR-TENLQRRAVWVVERI  516 (572)
Q Consensus       440 ~~~g~i~~Lv~lL~~--~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~-~~~~~~~a~~~l~~l  516 (572)
                      .+.+.+|-|.++|..  ..++++..++..+++++.|+    ..+..+.++|-++.|+++|+..+ |+++.-..+.++.++
T Consensus       530 ~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~----~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~l  605 (708)
T PF05804_consen  530 QEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDP----ECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQL  605 (708)
T ss_pred             HhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCH----HHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHH
Confidence            367899999999964  45689999999999999874    46778899999999999996544 477888899999999


Q ss_pred             HcchhhhhhhcCCCCchHHHHHHhhcCCchhHHHHHHHHHhhcc
Q 008257          517 LRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHIDK  560 (572)
Q Consensus       517 ~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~~  560 (572)
                      ..|++.|..+....+++.-|++++++.++.+|+.|-.+|--+..
T Consensus       606 l~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e  649 (708)
T PF05804_consen  606 LFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAE  649 (708)
T ss_pred             HcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            99999999887766777799999999999999999999876654

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.90  E-value=3.3e-22  Score=210.10  Aligned_cols=417  Identities=17%  Similarity=0.177  Sum_probs=300.3

Q ss_pred             cHHHHHHHccCCHHHHHHHHHHHHHhcc-CcchhHHHHhhhH-HHHHHhcccCCHHHHHHHHHHHHHhhcC---CCcHHH
Q 008257           38 LQPLLTQILEGPQETKLSLAAFLGDLAL-NSDVKVLVARTVG-SCLINIMKSGNMQAREAALKALNQISSC---EPSAKV  112 (572)
Q Consensus        38 i~~Lv~~L~~~~~~~~~~aa~~L~~l~~-~~~~k~~i~~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~---~~~~~~  112 (572)
                      ++..+.+|.+.++.+|.+||..|.+++. +++.|..+.+.|+ |.||.+|++.+.++|.+|+++|+||...   ++|+-.
T Consensus       235 lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKla  314 (717)
T KOG1048|consen  235 LPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLA  314 (717)
T ss_pred             cHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchh
Confidence            5677899999999999999999999988 7788999988877 9999999999999999999999999953   467888


Q ss_pred             HHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcC--------
Q 008257          113 LIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNT--------  184 (572)
Q Consensus       113 iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~--------  184 (572)
                      |.+.|+||.++++|+...    +.++++..+.+|+||++++. .         ........++.|.+-...+        
T Consensus       315 i~~~~Gv~~l~~~Lr~t~----D~ev~e~iTg~LWNLSS~D~-l---------K~~ii~~al~tLt~~vI~P~Sgw~~~~  380 (717)
T KOG1048|consen  315 IKELNGVPTLVRLLRHTQ----DDEVRELITGILWNLSSNDA-L---------KMLIITSALSTLTDNVIIPHSGWEEEP  380 (717)
T ss_pred             hhhcCChHHHHHHHHhhc----chHHHHHHHHHHhcccchhH-H---------HHHHHHHHHHHHHHhhcccccccCCCC
Confidence            999999999999998642    47999999999999988632 1         1223344555555444311        


Q ss_pred             ------ChhHHHHHHHHHHHccCCCCccHHHHHHHHhc-CChHHHHHHhc------CCCHHHHHHHHHHHHHcCCCCChh
Q 008257          185 ------GPTIECKLLQVLVGLTSSPTTVLSVVSAIKSS-GATISLVQFVE------APQNDLRLASIELIQNLSPHMGHE  251 (572)
Q Consensus       185 ------~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~-g~i~~Lv~lL~------~~~~~v~~~a~~~L~~Ls~~~~~~  251 (572)
                            +.++-.++.++|.|+++...   +.|+.|+++ |.|..|+..++      ..|....++++++|+||+.....+
T Consensus       381 ~~~~~~~~~vf~n~tgcLRNlSs~~~---eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~E  457 (717)
T KOG1048|consen  381 APRKAEDSTVFRNVTGCLRNLSSAGQ---EAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAE  457 (717)
T ss_pred             cccccccceeeehhhhhhccccchhH---HHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhh
Confidence                  23445689999999998653   578888887 56888888876      224578999999999999764333


Q ss_pred             HHHH----Hhcc-----cCChhhHHhhhccCCCChHH-HHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCC
Q 008257          252 LADA----LRGA-----VGQLGSLIRVISENVGISKE-QAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGE  321 (572)
Q Consensus       252 ~~~~----i~~~-----~g~l~~Lv~lL~~~~~~~~~-~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~  321 (572)
                      +...    +.+.     .|...--++++.....  +. ...-...+-.... .+.--++++...++.+.+.+|...+   
T Consensus       458 vp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~--k~~~~~~~~~~pe~~~-~pkG~e~Lw~p~vVr~Yl~Ll~~s~---  531 (717)
T KOG1048|consen  458 VPPKYRQVLANIARLPGVGPPAESVGCFGFKKR--KSDDNCDDLPIPERAT-APKGSEWLWHPSVVRPYLLLLALSK---  531 (717)
T ss_pred             cCHhhhhHhhcccccccCCCcccccccccchhh--hchhcccccCCccccc-CCCCceeeecHHHHHHHHHHHHHhc---
Confidence            2111    1111     0110012222222221  10 0000001111111 2222256777788888888887532   


Q ss_pred             CCCCcchhhHHHHHHHHHHHHhccCCC-ChHHHHHH-HHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCC
Q 008257          322 TRGSRFVTPFLEGLLSVLARVTFVLSD-EPDAIALC-CEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLP  399 (572)
Q Consensus       322 ~~~~~~~~~~~e~a~~aL~~l~~~~~~-~~~~~~~i-~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~  399 (572)
                            ...+.|++++||-+++...-. ....+..+ .++.++|++++||+.+ ++.|.+.++.+|.||+.+..+..   
T Consensus       532 ------n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~-~~~vv~s~a~~LrNls~d~rnk~---  601 (717)
T KOG1048|consen  532 ------NDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRND-DSDVVRSAAGALRNLSRDIRNKE---  601 (717)
T ss_pred             ------chHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcC-CchHHHHHHHHHhhhccCchhhh---
Confidence                  345689999999999875111 11234444 7889999999999999 99999999999999987643321   


Q ss_pred             CCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCC------CHhHHHHHHHHHHHhhhc
Q 008257          400 ELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHT------NEKVVEASLAALSTVIDD  473 (572)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~------~~~v~~~A~~aL~~l~~~  473 (572)
                                                             ++..++++-||+.|.+.      ++++...++.+|.++...
T Consensus       602 ---------------------------------------ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~  642 (717)
T KOG1048|consen  602 ---------------------------------------LIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRK  642 (717)
T ss_pred             ---------------------------------------hhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHH
Confidence                                                   34467999999999653      368999999999999976


Q ss_pred             CccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcchhhhhhhcCC
Q 008257          474 GVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGD  529 (572)
Q Consensus       474 ~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~  529 (572)
                      ..   .++..+.+.+|++.|+-+.+...++..-+.|...+..+=.+.+.+..+...
T Consensus       643 ~~---~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~eLh~~~kk~  695 (717)
T KOG1048|consen  643 NV---LNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKELHFKLKKK  695 (717)
T ss_pred             hH---HHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhhhHhhh
Confidence            54   457789999999999988875556788788888888887778888777664

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.79  E-value=1.4e-17  Score=175.48  Aligned_cols=380  Identities=16%  Similarity=0.162  Sum_probs=271.0

Q ss_pred             HHHHHhcccCCHHHHHHHHHHHHHhhcCCC-cHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCC
Q 008257           79 SCLINIMKSGNMQAREAALKALNQISSCEP-SAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFD  157 (572)
Q Consensus        79 ~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~-~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~  157 (572)
                      |--|.||.+.++.+|-+|+.-+..++..+. .+..+-..|+||.||.+|.+..     .+++..|+++|.||+-....  
T Consensus       236 pe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~-----~evq~~acgaLRNLvf~~~~--  308 (717)
T KOG1048|consen  236 PEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRN-----DEVQRQACGALRNLVFGKST--  308 (717)
T ss_pred             HHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCc-----HHHHHHHHHHHHhhhcccCC--
Confidence            888999999999999999999999997544 4666779999999999998753     78899999999999754321  


Q ss_pred             ccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcC-CCHHHHHH
Q 008257          158 SITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEA-PQNDLRLA  236 (572)
Q Consensus       158 ~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~  236 (572)
                                                                       +.++-+|.+++||+.++++|+. .|.++++.
T Consensus       309 -------------------------------------------------~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~  339 (717)
T KOG1048|consen  309 -------------------------------------------------DSNKLAIKELNGVPTLVRLLRHTQDDEVREL  339 (717)
T ss_pred             -------------------------------------------------cccchhhhhcCChHHHHHHHHhhcchHHHHH
Confidence                                                             1235677899999999999986 67899999


Q ss_pred             HHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCC------------ChHHHHHHHHHHhcCCCCcHHHHHHHHhC
Q 008257          237 SIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVG------------ISKEQAAAVGLLAELPERDLGLTRQMLDE  304 (572)
Q Consensus       237 a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~------------~~~~~~~A~~~L~~L~~~~~~~~~~l~~~  304 (572)
                      ...+|+||++++  .+...+..  .++..|-.-+-.+.+            ..++-..+.++|+|+++...+.++.+.++
T Consensus       340 iTg~LWNLSS~D--~lK~~ii~--~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c  415 (717)
T KOG1048|consen  340 ITGILWNLSSND--ALKMLIIT--SALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMREC  415 (717)
T ss_pred             HHHHHhcccchh--HHHHHHHH--HHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhc
Confidence            999999999873  22223333  256666555443321            12456788999999999888888888766


Q ss_pred             -CChHHHHHHHhhhc-cCCCCCCcchhhHHHHHHHHHHHHhccCC--------------------CCh---------HHH
Q 008257          305 -GAFGLIFSRVKSIQ-LGETRGSRFVTPFLEGLLSVLARVTFVLS--------------------DEP---------DAI  353 (572)
Q Consensus       305 -g~l~~Lv~lL~~~~-~~~~~~~~~~~~~~e~a~~aL~~l~~~~~--------------------~~~---------~~~  353 (572)
                       |.|..|+..+++.- ...     .+..-.|+++..|.++.-.+.                    ..+         ..+
T Consensus       416 ~GLIdaL~~~iq~~i~~~~-----~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~  490 (717)
T KOG1048|consen  416 DGLIDALLFSIQTAIQKSD-----LDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKR  490 (717)
T ss_pred             cchHHHHHHHHHHHHHhcc-----ccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhh
Confidence             88999999998521 111     233347899999988863321                    000         001


Q ss_pred             HH---------------------HHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccc
Q 008257          354 AL---------------------CCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFP  412 (572)
Q Consensus       354 ~~---------------------i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~  412 (572)
                      +.                     +...-++.+...+|.-..++.+.+.+|.||.|++.........              
T Consensus       491 k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~--------------  556 (717)
T KOG1048|consen  491 KSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEY--------------  556 (717)
T ss_pred             hchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhH--------------
Confidence            10                     0111134454555554347788899999999987543222110              


Q ss_pred             cccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHH
Q 008257          413 CFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKP  492 (572)
Q Consensus       413 ~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~  492 (572)
                                          ++..+ +....+.++|++||+..++.|+..++.+|.||+.|.    .....| .-++|+.
T Consensus       557 --------------------~~~~v-~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~----rnk~li-gk~a~~~  610 (717)
T KOG1048|consen  557 --------------------MRGAV-FRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI----RNKELI-GKYAIPD  610 (717)
T ss_pred             --------------------HHhhh-hhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCc----hhhhhh-hcchHHH
Confidence                                00111 357789999999999999999999999999999874    233444 4789999


Q ss_pred             HHHHHhhcCC-----HHHHHHHHHHHHHHH-cchhhhhhhcCCCCchHHHHHHhhcCC-chhHHHHHHHHHhhcccCCC
Q 008257          493 ILDVLLEKRT-----ENLQRRAVWVVERIL-RTDDIAYEVSGDPNVSTALVDAFQHAD-YRTRQIAERALKHIDKIPNF  564 (572)
Q Consensus       493 L~~lL~~~~~-----~~~~~~a~~~l~~l~-~~~~~~~~~~~~~~~~~~Lv~ll~~~~-~~~~~~Aa~aL~~L~~~~~~  564 (572)
                      |++.|.+++.     ++.-..+...|.++. .+.++.+.+...+++. .|+-+.++.. +.+-+.|+..|..|=.+.+.
T Consensus       611 lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~-kL~~I~~s~~S~k~~kaAs~vL~~lW~y~eL  688 (717)
T KOG1048|consen  611 LVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIP-KLRLISKSQHSPKEFKAASSVLDVLWQYKEL  688 (717)
T ss_pred             HHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChH-HHHHHhcccCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999976555     566666777788888 5577777877778886 8888887744 57777888777766554443

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.77  E-value=4e-17  Score=178.18  Aligned_cols=363  Identities=14%  Similarity=0.137  Sum_probs=273.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCC---HHHHHHHHHHHHHhcc-C-cchh--HHHH
Q 008257            2 TSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGP---QETKLSLAAFLGDLAL-N-SDVK--VLVA   74 (572)
Q Consensus         2 ~~~~s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~---~~~~~~aa~~L~~l~~-~-~~~k--~~i~   74 (572)
                      .|+-..|.+-   -.+-+..|+.+++....|+..|+++-|+++|.-..   .+.+..|-.+|.|+.+ . |+.+  +.+.
T Consensus       204 sml~t~D~ee---~ar~fLemSss~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~k  280 (2195)
T KOG2122|consen  204 SMLGTDDEEE---MARTFLEMSSSPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKK  280 (2195)
T ss_pred             hhcccCCHHH---HHHHHHHhccCchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHH
Confidence            3555666542   33556677888999999999999999999997543   4567888899999987 3 2322  1111


Q ss_pred             hhh--------HHHHHHhcccC--------CHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccC-------C
Q 008257           75 RTV--------GSCLINIMKSG--------NMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVG-------S  131 (572)
Q Consensus        75 ~~g--------~~~Lv~lL~s~--------~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~-------~  131 (572)
                      -.-        ...+..+|...        +....+.|+.+|.+++-++++|..|-+.|++..+-+||.-.+       -
T Consensus       281 vL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tn  360 (2195)
T KOG2122|consen  281 VLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETN  360 (2195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCC
Confidence            111        13333444432        122345899999999999999999999999999999885321       0


Q ss_pred             CCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccc-hhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHH
Q 008257          132 NHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLV-SEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVV  210 (572)
Q Consensus       132 ~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~-~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~  210 (572)
                      +.....++.+|..+|.||..++.....        .+. ..|++..+|.-|.+...++++-.+.+|.||+...+.  ..+
T Consensus       361 d~~~~aLRrYa~MALTNLTFGDv~NKa--------~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~--nmK  430 (2195)
T KOG2122|consen  361 DGECNALRRYAGMALTNLTFGDVANKA--------TLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADS--NMK  430 (2195)
T ss_pred             cHHHHHHHHHHHHHhhccccccccchh--------hhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccc--cHH
Confidence            112347899999999999877654322        233 478999999999999999999999999999987553  467


Q ss_pred             HHHHhcCChHHHHHH-hcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCC--ChHHHHHHHHHH
Q 008257          211 SAIKSSGATISLVQF-VEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVG--ISKEQAAAVGLL  287 (572)
Q Consensus       211 ~~i~~~g~i~~Lv~l-L~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~--~~~~~~~A~~~L  287 (572)
                      +.+.+.|-+..|+.. ++...+......+.+||||+.|...+- ..|+..+|++..||.+|.....  .-.+-..|-++|
T Consensus       431 kvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNK-A~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGIL  509 (2195)
T KOG2122|consen  431 KVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENK-AEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGIL  509 (2195)
T ss_pred             HHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccc-hhhhcccchHHHHHhhccccCCcchhhhhhcCccHH
Confidence            888899999988864 445555567778899999998743332 2566656999999999998743  125666777888


Q ss_pred             hcCCC---CcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHH
Q 008257          288 AELPE---RDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAAL  364 (572)
Q Consensus       288 ~~L~~---~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~  364 (572)
                      .|.+.   ....+++.+.+.+.|..|+..|++.          .--+..++.|+||||...   +++-++.+.+.|++|.
T Consensus       510 RNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~----------SLTiVSNaCGTLWNLSAR---~p~DQq~LwD~gAv~m  576 (2195)
T KOG2122|consen  510 RNVSSLIATCEDYRQILRRHNCLQTLLQHLKSH----------SLTIVSNACGTLWNLSAR---SPEDQQMLWDDGAVPM  576 (2195)
T ss_pred             HHHHhHhhccchHHHHHHHhhHHHHHHHHhhhc----------ceEEeecchhhhhhhhcC---CHHHHHHHHhcccHHH
Confidence            77543   3567888999999999999999873          223467899999999874   9999999999999999


Q ss_pred             HHHHhccCCcHHHHHHHHHHHHHhhhhc
Q 008257          365 FIELLQSNGLDKVQMVSATALENLSLES  392 (572)
Q Consensus       365 Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~  392 (572)
                      |-.|+.+. ...+-.-++.||.|+..+-
T Consensus       577 LrnLIhSK-hkMIa~GSaaALrNLln~R  603 (2195)
T KOG2122|consen  577 LRNLIHSK-HKMIAMGSAAALRNLLNFR  603 (2195)
T ss_pred             HHHHHhhh-hhhhhhhHHHHHHHHhcCC
Confidence            99999998 7778888999999986544

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.67  E-value=1.1e-13  Score=137.20  Aligned_cols=384  Identities=16%  Similarity=0.178  Sum_probs=288.5

Q ss_pred             HHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhH-HHHHHhcccCC
Q 008257           11 TVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVG-SCLINIMKSGN   89 (572)
Q Consensus        11 ~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~Lv~lL~s~~   89 (572)
                      ..+.|...|.||+.+-.--.+|+....+.-||+.|..++-+.-......|..++..++||....+.|+ ..|+++..+.+
T Consensus       279 LLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h  358 (791)
T KOG1222|consen  279 LLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQH  358 (791)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCC
Confidence            45678899999999887888899999999999999999988888888999999999999999999999 99999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccc
Q 008257           90 MQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLV  169 (572)
Q Consensus        90 ~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~  169 (572)
                      ++.+...+..|.||+-+..++..||..|.+|.|+.+|.+.       .-+.-|..+|+.++.++.         -...+.
T Consensus       359 ~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d-------~~~~iA~~~lYh~S~dD~---------~K~Mfa  422 (791)
T KOG1222|consen  359 PDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSD-------TKHGIALNMLYHLSCDDD---------AKAMFA  422 (791)
T ss_pred             HHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCc-------ccchhhhhhhhhhccCcH---------HHHHHH
Confidence            9999999999999999999999999999999999999762       346779999999976432         113567


Q ss_pred             hhhhHHHHHHHHhc-CChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHH-hcCCCHHHHHHHHHHHHHcCCC
Q 008257          170 SEDIVHNLLHLISN-TGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQF-VEAPQNDLRLASIELIQNLSPH  247 (572)
Q Consensus       170 ~~~~i~~Lv~lL~~-~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~l-L~~~~~~v~~~a~~~L~~Ls~~  247 (572)
                      ...+|+.+++.+-+ .+.++-...+....++|-+..+    .+.+++..|+..|.+. +++.++-    -.+.+++++.|
T Consensus       423 yTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRN----aQlvceGqgL~~LM~ra~k~~D~l----LmK~vRniSqH  494 (791)
T KOG1222|consen  423 YTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRN----AQLVCEGQGLDLLMERAIKSRDLL----LMKVVRNISQH  494 (791)
T ss_pred             HHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhcccc----ceEEecCcchHHHHHHHhcccchH----HHHHHHHhhhc
Confidence            78899999987765 4556665555555688877643    4567788888888764 3444432    24678999999


Q ss_pred             CChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcc
Q 008257          248 MGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRF  327 (572)
Q Consensus       248 ~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~  327 (572)
                      ++..- ..+..   .+..|.+.+.+.++ +..-...+++++||.-.+-.-.+.+.+...+|++-..|+...       .+
T Consensus       495 eg~tq-n~Fid---yvgdLa~i~~nd~~-E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga-------~e  562 (791)
T KOG1222|consen  495 EGATQ-NMFID---YVGDLAGIAKNDNS-ESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGA-------DE  562 (791)
T ss_pred             cchHH-HHHHH---HHHHHHHHhhcCch-HHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCc-------cc
Confidence            76442 23332   57889999988876 467788999999998877777677888999999999987521       12


Q ss_pred             hhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCC-cHHHHHHHHHHHHHhhhhccccCCCCCCCCCCC
Q 008257          328 VTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNG-LDKVQMVSATALENLSLESKNLTKLPELPPSGF  406 (572)
Q Consensus       328 ~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~  406 (572)
                      +.-+.+ .+-++.-.+    .+......+..+|+||.|++||+... +++.-..-......+..+..  ++         
T Consensus       563 ddLvL~-~vi~~GT~a----~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~--tr---------  626 (791)
T KOG1222|consen  563 DDLVLQ-IVIACGTMA----RDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHEL--TR---------  626 (791)
T ss_pred             hhhhhH-HHHHhhhhh----hhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHH--HH---------
Confidence            222232 334444444    37778888899999999999999752 44544333333333333211  00         


Q ss_pred             CccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCc
Q 008257          407 CASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGV  475 (572)
Q Consensus       407 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~  475 (572)
                                                   ...+-+...=.-|++|++..+.+++...=.+|-.++.++.
T Consensus       627 -----------------------------~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~  666 (791)
T KOG1222|consen  627 -----------------------------RLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDK  666 (791)
T ss_pred             -----------------------------HHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhH
Confidence                                         0011122233569999999999998888888888886654

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.62  E-value=4.9e-13  Score=127.49  Aligned_cols=310  Identities=12%  Similarity=0.137  Sum_probs=226.6

Q ss_pred             cCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCC--CHHHHHHHHHHHHHcCCCCChhHHHHHhccc
Q 008257          183 NTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAP--QNDLRLASIELIQNLSPHMGHELADALRGAV  260 (572)
Q Consensus       183 ~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~  260 (572)
                      +++..+-.+++.+|..++....       .+.++.|...++.+|..+  +.++-......+..-+-.. +-..+.+++. 
T Consensus       118 ~~~~~~l~ksL~al~~lt~~qp-------dl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~h-E~nrQ~~m~~-  188 (461)
T KOG4199|consen  118 SPNESVLKKSLEAINSLTHKQP-------DLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMH-EVNRQLFMEL-  188 (461)
T ss_pred             CCchhHHHHHHHHHHHhhcCCc-------chhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHh-HHHHHHHHHh-
Confidence            4455566678888888877643       244789999999999654  3456555555554444221 2223456776 


Q ss_pred             CChhhHHhhhccCCCChHHHHHHHHHHhcCCCCc---------HHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhH
Q 008257          261 GQLGSLIRVISENVGISKEQAAAVGLLAELPERD---------LGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPF  331 (572)
Q Consensus       261 g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~---------~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~  331 (572)
                      +.++.+.+.|..... ...-.++.++++-+...|         .++.+.+..+|++..|+..++...         ++.+
T Consensus       189 ~il~Li~~~l~~~gk-~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~---------dp~~  258 (461)
T KOG4199|consen  189 KILELILQVLNREGK-TRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGI---------DPDS  258 (461)
T ss_pred             hHHHHHHHHHcccCc-cHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccC---------CccH
Confidence            778877767654442 245566777787776633         244578999999999999998622         2344


Q ss_pred             HHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHH---HHHHHHHhhhhccccCCCCCCCCCCCCc
Q 008257          332 LEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMV---SATALENLSLESKNLTKLPELPPSGFCA  408 (572)
Q Consensus       332 ~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~---Aa~aL~~ls~~~~~~~~~~~~~~~~~~~  408 (572)
                      ...+..+|..++-    +.+..+.+.+.|++..|++++.+......|..   +...|..++.++.               
T Consensus       259 L~~l~~tl~~lAV----r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~Ds---------------  319 (461)
T KOG4199|consen  259 LVSLSTTLKALAV----RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDS---------------  319 (461)
T ss_pred             HHHHHHHHHHHHH----HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCc---------------
Confidence            6667888888883    67888999999999999999998635555544   4444455554432               


Q ss_pred             cccccccCCCccccccccccCccCccchhhhhhccchHHHHHhh--cCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHh
Q 008257          409 SIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALL--DHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCE  486 (572)
Q Consensus       409 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL--~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~  486 (572)
                                                ..-.|++.||.+.++.++  .+++|.|.+.++.+++.|+.-.+   +....+++
T Consensus       320 --------------------------vKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~p---dhsa~~ie  370 (461)
T KOG4199|consen  320 --------------------------VKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSP---DHSAKAIE  370 (461)
T ss_pred             --------------------------hHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCc---chHHHHHh
Confidence                                      122488999999999998  56899999999999999998765   44667889


Q ss_pred             cCChHHHHHHHhhcCC-HHHHHHHHHHHHHHHcc-hhhhhhhcCCCCchHHHHHHhhcCCchhHHHHHHHHHhhccc
Q 008257          487 AQGIKPILDVLLEKRT-ENLQRRAVWVVERILRT-DDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHIDKI  561 (572)
Q Consensus       487 ~g~i~~L~~lL~~~~~-~~~~~~a~~~l~~l~~~-~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~  561 (572)
                      .||-...++-|+.|+- ..+|.+|.|++.|+.-+ .+.+..+- +.|+. .|+..-++.++.+...|..||..|+-.
T Consensus       371 ~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l-~~GiE-~Li~~A~~~h~tce~~akaALRDLGc~  445 (461)
T KOG4199|consen  371 AGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILL-ANGIE-KLIRTAKANHETCEAAAKAALRDLGCD  445 (461)
T ss_pred             cchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHH-hccHH-HHHHHHHhcCccHHHHHHHHHHhcCcc
Confidence            9999999999988886 56899999999999955 44444433 34664 899999999999999999999999753

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.61  E-value=3.4e-14  Score=155.82  Aligned_cols=363  Identities=16%  Similarity=0.147  Sum_probs=267.9

Q ss_pred             HHHHHHHHHHHHhccCcchhHHHHhhhH-HHHHHhcccC---CHHHHHHHHHHHHHhhcCC-CcHHHHHHcCChHHHHH-
Q 008257           51 ETKLSLAAFLGDLALNSDVKVLVARTVG-SCLINIMKSG---NMQAREAALKALNQISSCE-PSAKVLIHAGILPPLVK-  124 (572)
Q Consensus        51 ~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~Lv~lL~s~---~~~~~~~A~~aL~~Ls~~~-~~~~~iv~~G~i~~Lv~-  124 (572)
                      ..+.+++..+..|..+.+....++..|. |.||++|-..   +.+.+..|-.+|.||..+. +.+..=.+.-+++.|=+ 
T Consensus       209 ~D~ee~ar~fLemSss~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQI  288 (2195)
T KOG2122|consen  209 DDEEEMARTFLEMSSSPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQI  288 (2195)
T ss_pred             CCHHHHHHHHHHhccCchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHH
Confidence            3466788888889888888899999999 9999999753   4577889999999999753 33222223334444332 


Q ss_pred             ---------HHhccCCCC--CCcchHH-HHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhc---------
Q 008257          125 ---------DLFTVGSNH--LPMRLKE-VSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISN---------  183 (572)
Q Consensus       125 ---------lL~s~~~~~--~~~~~~~-~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~---------  183 (572)
                               .|...+...  .+..-+. .|..+|..++...         ++++.+.+-|.+..+-+|+.-         
T Consensus       289 raYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDE---------EhR~aM~ELG~LqAIaeLl~vDh~mhgp~t  359 (2195)
T KOG2122|consen  289 RAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDE---------EHRHAMNELGGLQAIAELLQVDHEMHGPET  359 (2195)
T ss_pred             HHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccH---------HHHHHHHHhhhHHHHHHHHHHHHHhcCCCC
Confidence                     233322111  1112222 5666666665432         234567778888887777741         


Q ss_pred             C---ChhHHHHHHHHHHHccCCCCccHHHHHHHH-hcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcc
Q 008257          184 T---GPTIECKLLQVLVGLTSSPTTVLSVVSAIK-SSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGA  259 (572)
Q Consensus       184 ~---~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~  259 (572)
                      .   ...++..+..+|-||+-...+   ++..++ ..|.+..+|..|.+..+++..--+.+|+||+=..+....+.+.+.
T Consensus       360 nd~~~~aLRrYa~MALTNLTFGDv~---NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~  436 (2195)
T KOG2122|consen  360 NDGECNALRRYAGMALTNLTFGDVA---NKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRET  436 (2195)
T ss_pred             CcHHHHHHHHHHHHHhhcccccccc---chhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhh
Confidence            1   224577888899999876543   233333 568899999999988878888888999999943333444567777


Q ss_pred             cCChhhHHhhhc-cCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhC-CChHHHHHHHhhhccCCCCCCcchhhHHHHHHH
Q 008257          260 VGQLGSLIRVIS-ENVGISKEQAAAVGLLAELPERDLGLTRQMLDE-GAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLS  337 (572)
Q Consensus       260 ~g~l~~Lv~lL~-~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~-g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~  337 (572)
                       |-+-.|+..-- ...+  ....+.+.+|+||+.+..+++..|+.- |++..||.+|.-.  +.    ...-.++|.+-|
T Consensus       437 -GsVtaLa~~al~~~kE--sTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~--~q----s~tLaIIEsaGG  507 (2195)
T KOG2122|consen  437 -GSVTALAACALRNKKE--STLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYE--GQ----SNTLAIIESAGG  507 (2195)
T ss_pred             -hhHHHHHHHHHHhccc--chHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhcccc--CC----cchhhhhhcCcc
Confidence             88888888754 4442  456677899999999999998888754 8999999999742  11    124678999999


Q ss_pred             HHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCC
Q 008257          338 VLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQ  417 (572)
Q Consensus       338 aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (572)
                      +|-+..+.++.+...|+.+++++++..|++.|++. +..+..+++.+||||+..++                        
T Consensus       508 ILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~-SLTiVSNaCGTLWNLSAR~p------------------------  562 (2195)
T KOG2122|consen  508 ILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSH-SLTIVSNACGTLWNLSARSP------------------------  562 (2195)
T ss_pred             HHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhc-ceEEeecchhhhhhhhcCCH------------------------
Confidence            99998887778899999999999999999999999 88899999999999975332                        


Q ss_pred             CccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCc
Q 008257          418 PVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGV  475 (572)
Q Consensus       418 ~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~  475 (572)
                                      +.+-+|.+.|+|+-|-.|+++.+..+...++.||-||..+.+
T Consensus       563 ----------------~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RP  604 (2195)
T KOG2122|consen  563 ----------------EDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRP  604 (2195)
T ss_pred             ----------------HHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCc
Confidence                            345568899999999999999999999999999999997653

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.61  E-value=1.2e-12  Score=124.82  Aligned_cols=354  Identities=16%  Similarity=0.205  Sum_probs=255.7

Q ss_pred             HHHHHHHHhhcc-C---cchHHHHHHcCCcHHHHHHHc---cCCHHHHHHHHHHHHHhccCcchhHHHHhh-hHHHHHHh
Q 008257           13 EKAEKTLANLEK-C---ENNVRQMAENGRLQPLLTQIL---EGPQETKLSLAAFLGDLALNSDVKVLVART-VGSCLINI   84 (572)
Q Consensus        13 ~~A~~~L~~L~~-~---~~n~~~i~~~g~i~~Lv~~L~---~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~-g~~~Lv~l   84 (572)
                      +.....|.+|+. +   ...+..-...|..+.++..+.   +++..+-.++..+|..+....+   .+... |...++++
T Consensus        77 ~E~s~ll~~l~d~ck~~~A~r~la~~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~~qp---dl~da~g~~vvv~l  153 (461)
T KOG4199|consen   77 EETTELLEQLADECKKSLAHRVLAGKNGAHDALITLLELAESPNESVLKKSLEAINSLTHKQP---DLFDAEAMAVVLKL  153 (461)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHhccCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhhcCCc---chhccccHHHHHHH
Confidence            344566666662 1   112233336677777776543   4455566677777777665322   33343 45888888


Q ss_pred             cc--cCCHHHHHHHHHHHHHhhc-CCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCcccc
Q 008257           85 MK--SGNMQAREAALKALNQISS-CEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITV  161 (572)
Q Consensus        85 L~--s~~~~~~~~A~~aL~~Ls~-~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~  161 (572)
                      |.  +++.++-...+.++..=+. ++.|++.+++.|++|.+.+.|...+    ...+.+.+.|++.-|...+. .+   +
T Consensus       154 L~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~g----k~~~VRel~~a~r~l~~dDD-iR---V  225 (461)
T KOG4199|consen  154 LALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREG----KTRTVRELYDAIRALLTDDD-IR---V  225 (461)
T ss_pred             HhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccC----ccHHHHHHHHHHHHhcCCCc-ee---e
Confidence            85  4667788888888887764 6788999999999999998886543    24567778888888865432 11   1


Q ss_pred             CCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCC-CHHHHHHHHHH
Q 008257          162 GPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAP-QNDLRLASIEL  240 (572)
Q Consensus       162 ~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~a~~~  240 (572)
                      -        .|                            . ..   .-.+.|...|++..|++.+... +|++-.....+
T Consensus       226 ~--------fg----------------------------~-ah---~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~t  265 (461)
T KOG4199|consen  226 V--------FG----------------------------Q-AH---GHARTIAKEGILTALTEALQAGIDPDSLVSLSTT  265 (461)
T ss_pred             e--------cc----------------------------h-hh---HHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHH
Confidence            0        00                            0 00   1235667788999999999865 57888888889


Q ss_pred             HHHcCCCCChhHHHHHhcccCChhhHHhhhccCCC--ChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhc
Q 008257          241 IQNLSPHMGHELADALRGAVGQLGSLIRVISENVG--ISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQ  318 (572)
Q Consensus       241 L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~--~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~  318 (572)
                      |..|+-.  +++.+.+.+. |++..|++++.+.+.  +...-..+..+|+.|+. ++.++..+++.|+.+.++.++....
T Consensus       266 l~~lAVr--~E~C~~I~e~-GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG-~DsvKs~IV~~gg~~~ii~l~~~h~  341 (461)
T KOG4199|consen  266 LKALAVR--DEICKSIAES-GGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAG-SDSVKSTIVEKGGLDKIITLALRHS  341 (461)
T ss_pred             HHHHHHH--HHHHHHHHHc-cCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhC-CCchHHHHHHhcChHHHHHHHHHcC
Confidence            9999855  4677888888 999999999988654  22234567778888887 5567789999999999999886532


Q ss_pred             cCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccC-CcHHHHHHHHHHHHHhhhhccccCC
Q 008257          319 LGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSN-GLDKVQMVSATALENLSLESKNLTK  397 (572)
Q Consensus       319 ~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~vk~~Aa~aL~~ls~~~~~~~~  397 (572)
                              .++.+.+.+..+++-++-   ..|++...+++.|+-...++-++.. ....+|++|++.+.|+...+...+.
T Consensus       342 --------~~p~Vi~~~~a~i~~l~L---R~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~  410 (461)
T KOG4199|consen  342 --------DDPLVIQEVMAIISILCL---RSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRT  410 (461)
T ss_pred             --------CChHHHHHHHHHHHHHHh---cCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccc
Confidence                    366778888888888875   4899999999999999999999975 2567999999999999876654433


Q ss_pred             CCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhc
Q 008257          398 LPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDD  473 (572)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~  473 (572)
                                                               +.=+.|++.|+..-...++.+...|-.||-.|--|
T Consensus       411 -----------------------------------------~~l~~GiE~Li~~A~~~h~tce~~akaALRDLGc~  445 (461)
T KOG4199|consen  411 -----------------------------------------ILLANGIEKLIRTAKANHETCEAAAKAALRDLGCD  445 (461)
T ss_pred             -----------------------------------------hHHhccHHHHHHHHHhcCccHHHHHHHHHHhcCcc
Confidence                                                     12345899999999999888888888888877654

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.60  E-value=4.2e-12  Score=135.85  Aligned_cols=403  Identities=15%  Similarity=0.163  Sum_probs=272.9

Q ss_pred             CCCCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccCcch-hHHHHhhhH-HHH
Q 008257            4 SKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDV-KVLVARTVG-SCL   81 (572)
Q Consensus         4 ~~s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~-k~~i~~~g~-~~L   81 (572)
                      +++.+.+....++.+|..+-........  ..++.+.|...|.++++.+|..++..|.+++.+++. ...+.+.++ +.+
T Consensus        47 L~~~~~e~v~~~~~iL~~~l~~~~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i  124 (503)
T PF10508_consen   47 LNTSNREQVELICDILKRLLSALSPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLI  124 (503)
T ss_pred             HhhcChHHHHHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHH
Confidence            3455667777788888888764333222  566778899999999999999999999999875544 445566788 999


Q ss_pred             HHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCcccc
Q 008257           82 INIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITV  161 (572)
Q Consensus        82 v~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~  161 (572)
                      +.+|.+++..+...|+.+|.+|+.++...+.+++.+.++.|..++...+     ..+|.+..+++.++++.+        
T Consensus       125 ~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~-----~~vR~Rv~el~v~i~~~S--------  191 (503)
T PF10508_consen  125 IQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSS-----DIVRCRVYELLVEIASHS--------  191 (503)
T ss_pred             HHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccC-----HHHHHHHHHHHHHHHhcC--------
Confidence            9999999999999999999999998888888889999999999997632     567777788888776543        


Q ss_pred             CCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHH
Q 008257          162 GPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELI  241 (572)
Q Consensus       162 ~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L  241 (572)
                                                                   ++....+.+.|.++.++..|+++|.-+|.+++.+|
T Consensus       192 ---------------------------------------------~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell  226 (503)
T PF10508_consen  192 ---------------------------------------------PEAAEAVVNSGLLDLLLKELDSDDILVQLNALELL  226 (503)
T ss_pred             ---------------------------------------------HHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHH
Confidence                                                         13456667889999999999998889999999999


Q ss_pred             HHcCCCCChhHHHHHhcccCChhhHHhhhccCCC---ChHHHHHHH-HHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhh
Q 008257          242 QNLSPHMGHELADALRGAVGQLGSLIRVISENVG---ISKEQAAAV-GLLAELPERDLGLTRQMLDEGAFGLIFSRVKSI  317 (572)
Q Consensus       242 ~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~---~~~~~~~A~-~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~  317 (572)
                      ..|+.. +.. .+.+... |.++.|+.++.....   .......+. ...++++..++..   +.  +..|.++..|.+.
T Consensus       227 ~~La~~-~~g-~~yL~~~-gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~---v~--~~~p~~~~~l~~~  298 (503)
T PF10508_consen  227 SELAET-PHG-LQYLEQQ-GIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQE---VL--ELYPAFLERLFSM  298 (503)
T ss_pred             HHHHcC-hhH-HHHHHhC-CHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHH---HH--HHHHHHHHHHHHH
Confidence            999974 223 3567776 999999999976543   112222222 3445555432222   11  4556666665532


Q ss_pred             ccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHH-HHcC-c----hHHHHHHhccCCcHHHHHHHHHHHHHhhhh
Q 008257          318 QLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALC-CEHN-L----AALFIELLQSNGLDKVQMVSATALENLSLE  391 (572)
Q Consensus       318 ~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i-~~~g-~----i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~  391 (572)
                      -.      ..+...+..|+.+++.+++    +.+-.+.+ ...+ .    +..+-....++ +.++|..+..++.++...
T Consensus       299 ~~------s~d~~~~~~A~dtlg~igs----t~~G~~~L~~~~~~~~~~~l~~~~~~~~~~-~~~lk~r~l~al~~il~~  367 (503)
T PF10508_consen  299 LE------SQDPTIREVAFDTLGQIGS----TVEGKQLLLQKQGPAMKHVLKAIGDAIKSG-STELKLRALHALASILTS  367 (503)
T ss_pred             hC------CCChhHHHHHHHHHHHHhC----CHHHHHHHHhhcchHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHhc
Confidence            10      1245567889999999984    56655555 3332 3    33334444455 788999999999999643


Q ss_pred             ccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchH-HHHHhhcCCCHhHHHHHHHHHHHh
Q 008257          392 SKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVE-KLIALLDHTNEKVVEASLAALSTV  470 (572)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~-~Lv~lL~~~~~~v~~~A~~aL~~l  470 (572)
                      ......          ..++. +                  .+.-|.....+... .++.+++.+-++++.++.+.|..+
T Consensus       368 ~~~~~~----------~~i~~-~------------------~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l  418 (503)
T PF10508_consen  368 GTDRQD----------NDILS-I------------------TESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQAL  418 (503)
T ss_pred             CCCCch----------HHHHH-H------------------HHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence            322100          00000 0                  01112222333444 788999999999999999999999


Q ss_pred             hhcCccchhhHHHHHhcCCh-HHHHHHHhhcCCHHHHHHHHHHHHHHHcc
Q 008257          471 IDDGVDIEQGVMVLCEAQGI-KPILDVLLEKRTENLQRRAVWVVERILRT  519 (572)
Q Consensus       471 ~~~~~~~~~~~~~i~~~g~i-~~L~~lL~~~~~~~~~~~a~~~l~~l~~~  519 (572)
                      +..+    -++..+...+|+ ..+++-- ...+.+.++.=-.++.++...
T Consensus       419 ~~~~----Wg~~~i~~~~gfie~lldr~-~E~~K~~ke~K~~ii~~l~~~  463 (503)
T PF10508_consen  419 AAQP----WGQREICSSPGFIEYLLDRS-TETTKEGKEAKYDIIKALAKS  463 (503)
T ss_pred             hcCH----HHHHHHHhCccHHhhhcCCC-CCCCHHHHHHHHHHHHHHHhc
Confidence            9753    345556666553 3333322 133455666555666666644

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.58  E-value=7.2e-12  Score=134.11  Aligned_cols=422  Identities=15%  Similarity=0.221  Sum_probs=286.2

Q ss_pred             HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCc
Q 008257           79 SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDS  158 (572)
Q Consensus        79 ~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~  158 (572)
                      +.+++.|++.+.+....++.+|..+.....-...  ..+..+.|...|.+++     +.+|+.+++.|.+++.++.... 
T Consensus        41 ~~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l--~~~~~~~L~~gL~h~~-----~~Vr~l~l~~l~~~~~~~~~~~-  112 (503)
T PF10508_consen   41 PVLFDCLNTSNREQVELICDILKRLLSALSPDSL--LPQYQPFLQRGLTHPS-----PKVRRLALKQLGRIARHSEGAA-  112 (503)
T ss_pred             HHHHHHHhhcChHHHHHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHHhcCCHHHH-
Confidence            5588999988888888899999998874432322  6778889999998653     8999999999999987543211 


Q ss_pred             cccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHH
Q 008257          159 ITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASI  238 (572)
Q Consensus       159 ~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~  238 (572)
                             +.+...++++.++.++.+++.++...|+.+|..++..+..    ...+...+.+..|..++...++.+|..+.
T Consensus       113 -------~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~----~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~  181 (503)
T PF10508_consen  113 -------QLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEG----LEQLFDSNLLSKLKSLMSQSSDIVRCRVY  181 (503)
T ss_pred             -------HHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchh----HHHHhCcchHHHHHHHHhccCHHHHHHHH
Confidence                   3456788999999999999999999999999999987643    34566788899999999887888899999


Q ss_pred             HHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhc
Q 008257          239 ELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQ  318 (572)
Q Consensus       239 ~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~  318 (572)
                      .++.++++.. ++..+.+..+ |.++.+++.|.+++.  -++..++-+|..++. .+...+.+.+.|+++.|++++.+..
T Consensus       182 el~v~i~~~S-~~~~~~~~~s-gll~~ll~eL~~dDi--Lvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~  256 (503)
T PF10508_consen  182 ELLVEIASHS-PEAAEAVVNS-GLLDLLLKELDSDDI--LVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSE  256 (503)
T ss_pred             HHHHHHHhcC-HHHHHHHHhc-cHHHHHHHHhcCccH--HHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccc
Confidence            9999998774 4555666766 999999999999664  789999999999999 5566689999999999999998754


Q ss_pred             cCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCC
Q 008257          319 LGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKL  398 (572)
Q Consensus       319 ~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~  398 (572)
                      .+. +   ...-+.-+.+....+++..   +|..... .-...+..|.+++.+. ++..+..|..+++.++.+..-    
T Consensus       257 ~dp-~---~~~~~l~g~~~f~g~la~~---~~~~v~~-~~p~~~~~l~~~~~s~-d~~~~~~A~dtlg~igst~~G----  323 (503)
T PF10508_consen  257 EDP-R---LSSLLLPGRMKFFGNLARV---SPQEVLE-LYPAFLERLFSMLESQ-DPTIREVAFDTLGQIGSTVEG----  323 (503)
T ss_pred             cCC-c---ccchhhhhHHHHHHHHHhc---ChHHHHH-HHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHhCCHHH----
Confidence            221 0   1111223344455555532   2321111 0012233344555566 788888888899988754321    


Q ss_pred             CCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccch
Q 008257          399 PELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIE  478 (572)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~  478 (572)
                               +..+  +.+.+                ..+    ...+...-....++..+++..++.+|.++...+.+.+
T Consensus       324 ---------~~~L--~~~~~----------------~~~----~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~  372 (503)
T PF10508_consen  324 ---------KQLL--LQKQG----------------PAM----KHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQ  372 (503)
T ss_pred             ---------HHHH--Hhhcc----------------hHH----HHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCc
Confidence                     1111  00000                000    1134445555567778899999999999965443200


Q ss_pred             -----hhHHHHH---hcCChH-HHHHHHhhcCCHHHHHHHHHHHHHHHcchhhhhhhcCCCCchHHHHHHhhcCCchhHH
Q 008257          479 -----QGVMVLC---EAQGIK-PILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQ  549 (572)
Q Consensus       479 -----~~~~~i~---~~g~i~-~L~~lL~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~  549 (572)
                           ...+...   ..+... .++.+++ .+=+++|..+..+|..++.++-....+...+|+..-|++--...+.+.++
T Consensus       373 ~~~i~~~~~~w~~~~~~~~~~~~l~~~~~-qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke  451 (503)
T PF10508_consen  373 DNDILSITESWYESLSGSPLSNLLMSLLK-QPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTKEGKE  451 (503)
T ss_pred             hHHHHHHHHHHHHHhcCCchHHHHHHHhc-CCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHH
Confidence                 1111222   223333 5667773 55599999999999999998877778887767654444433344444444


Q ss_pred             HHHHHHHhhcccCC-CCCCCC
Q 008257          550 IAERALKHIDKIPN-FSGIFP  569 (572)
Q Consensus       550 ~Aa~aL~~L~~~~~-~s~~~~  569 (572)
                      .=-.++..|.+.+. .++.|.
T Consensus       452 ~K~~ii~~l~~~~~~~~~~~~  472 (503)
T PF10508_consen  452 AKYDIIKALAKSSTNASSVFD  472 (503)
T ss_pred             HHHHHHHHHHhcccchhhcCC
Confidence            43444555555555 444443

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.57  E-value=1.2e-12  Score=128.66  Aligned_cols=433  Identities=15%  Similarity=0.121  Sum_probs=292.8

Q ss_pred             HHHHHHHhhccCcchHHHHH----HcCCcHHHHHHHccCCHHHHHHHHHHHHHhcc-CcchhHHHHhhhH-HHHHHhccc
Q 008257           14 KAEKTLANLEKCENNVRQMA----ENGRLQPLLTQILEGPQETKLSLAAFLGDLAL-NSDVKVLVARTVG-SCLINIMKS   87 (572)
Q Consensus        14 ~A~~~L~~L~~~~~n~~~i~----~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~-~~~~k~~i~~~g~-~~Lv~lL~s   87 (572)
                      .+...+...+.++.-+..+.    .+|.+++|.+..++.+.++-....++|+|++. ++++|..+.+.|| ..+++.|++
T Consensus        61 ~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~  140 (604)
T KOG4500|consen   61 FQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKP  140 (604)
T ss_pred             hhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhcc
Confidence            34455555566665555554    56778888888888889999999999999887 8899999999988 999999985


Q ss_pred             ----CC---HHHHHHHHHHHHHhhcC-CCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCC-CCc
Q 008257           88 ----GN---MQAREAALKALNQISSC-EPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHD-FDS  158 (572)
Q Consensus        88 ----~~---~~~~~~A~~aL~~Ls~~-~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~-~~~  158 (572)
                          ++   .+.-.-+.+.|.|-..+ ++.+..+++.|++|.|..++.-+-+|   ..+.+.......|+.+--.+ .. 
T Consensus       141 ~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qN---aa~~e~ll~~f~nlls~~~e~~~-  216 (604)
T KOG4500|consen  141 YCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQN---AALTEKLLAPFFNLLSFVCEMLY-  216 (604)
T ss_pred             ccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhccccc---HHHHHHHHhccccHHHHHHHhhh-
Confidence                22   24456677888887764 44578889999999999988643222   44556555555565432110 00 


Q ss_pred             cccCCCccccchhhhHHHHHHHHhc-CChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcC-CCHHHHHH
Q 008257          159 ITVGPDNQTLVSEDIVHNLLHLISN-TGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEA-PQNDLRLA  236 (572)
Q Consensus       159 ~~~~~~~~~l~~~~~i~~Lv~lL~~-~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~  236 (572)
                             ........+..+++++.+ ..++..+-....|...+.+.    .++-.+.+.|-+..++++++. ++..-+..
T Consensus       217 -------~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend----~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d  285 (604)
T KOG4500|consen  217 -------PFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAEND----LVKLSLAQNGLLEDSIDLVRNMKDFTKKTD  285 (604)
T ss_pred             -------hhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCc----ceeeehhhcchHHHHHHHHHhcccccchHH
Confidence                   012233456677888864 45566666677777777664    456667889999999999986 44333444


Q ss_pred             HHHHHHHcC-------CCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHH
Q 008257          237 SIELIQNLS-------PHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGL  309 (572)
Q Consensus       237 a~~~L~~Ls-------~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~  309 (572)
                      +...+...+       .++ +.. +.+...+..+..++..+.+.+.  .....+.-+|+|++..|... -.+++.|.+..
T Consensus       286 ~~~l~k~~~el~vllltGD-eSM-q~L~~~p~~l~~~~sw~~S~d~--~l~t~g~LaigNfaR~D~~c-i~~v~~~~~nk  360 (604)
T KOG4500|consen  286 MLNLFKRIAELDVLLLTGD-ESM-QKLHADPQFLDFLESWFRSDDS--NLITMGSLAIGNFARRDDIC-IQLVQKDFLNK  360 (604)
T ss_pred             HHHHHHhhhhHhhhhhcCc-hHH-HHHhcCcHHHHHHHHHhcCCch--hHHHHHHHHHHhhhccchHH-HHHHHHHHHHH
Confidence            444443333       221 222 3455441268888999999886  78888888999999966555 67999999999


Q ss_pred             HHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhh
Q 008257          310 IFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLS  389 (572)
Q Consensus       310 Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls  389 (572)
                      |+.+|.... +. +   .+...+..++.||.++.-+    ..++..+..+|+...+...|+.. .+.++..-...+.-+.
T Consensus       361 L~~~l~~~~-~v-d---gnV~~qhA~lsALRnl~IP----v~nka~~~~aGvteaIL~~lk~~-~ppv~fkllgTlrM~~  430 (604)
T KOG4500|consen  361 LISCLMQEK-DV-D---GNVERQHACLSALRNLMIP----VSNKAHFAPAGVTEAILLQLKLA-SPPVTFKLLGTLRMIR  430 (604)
T ss_pred             HHHHHHHhc-CC-C---ccchhHHHHHHHHHhcccc----CCchhhccccchHHHHHHHHHhc-CCcchHHHHHHHHHHH
Confidence            999997532 11 1   2455678899999999854    34566788999999999999987 5666655444443221


Q ss_pred             hhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCH-hHHHHHHHHHH
Q 008257          390 LESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNE-KVVEASLAALS  468 (572)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~-~v~~~A~~aL~  468 (572)
                      ...+.                           ..|...      .      .-.-+..||+-=.++|- +|.....+.|.
T Consensus       431 d~qe~---------------------------~a~eL~------k------n~~l~ekLv~Wsks~D~aGv~gESnRll~  471 (604)
T KOG4500|consen  431 DSQEY---------------------------IACELA------K------NPELFEKLVDWSKSPDFAGVAGESNRLLL  471 (604)
T ss_pred             hchHH---------------------------HHHHHh------c------CHHHHHHHHHhhhCCccchhhhhhhHHHH
Confidence            11100                           011000      0      11134556666566554 48888888888


Q ss_pred             HhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 008257          469 TVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERIL  517 (572)
Q Consensus       469 ~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~  517 (572)
                      .|..+.. +++....+.+.|||+.++.++ ....-..|..|+-++..+.
T Consensus       472 ~lIkHs~-~kdv~~tvpksg~ik~~Vsm~-t~~hi~mqnEalVal~~~~  518 (604)
T KOG4500|consen  472 GLIKHSK-YKDVILTVPKSGGIKEKVSMF-TKNHINMQNEALVALLSTE  518 (604)
T ss_pred             HHHHhhH-hhhhHhhccccccHHHHHHHH-HHhhHHHhHHHHHHHHHHH
Confidence            8887643 445567788999999999999 5778888888888776553

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.55  E-value=5.7e-12  Score=130.26  Aligned_cols=492  Identities=14%  Similarity=0.111  Sum_probs=297.5

Q ss_pred             CCCCCHHHHHHHHHHHHhhcc-CcchHHHHHHcCCcHHHHHHHcc--CCHHHHHHHHHHHHHhcc-CcchhHHHHhhhH-
Q 008257            4 SKSENLLTVEKAEKTLANLEK-CENNVRQMAENGRLQPLLTQILE--GPQETKLSLAAFLGDLAL-NSDVKVLVARTVG-   78 (572)
Q Consensus         4 ~~s~~~~~~~~A~~~L~~L~~-~~~n~~~i~~~g~i~~Lv~~L~~--~~~~~~~~aa~~L~~l~~-~~~~k~~i~~~g~-   78 (572)
                      +...||+..-.|....+|+.. ++.++.-+.+.|+++.|..+++.  +..+.+...+..+..++. +......+.+.+. 
T Consensus        18 L~~~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~l   97 (678)
T KOG1293|consen   18 LLHLDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIEL   97 (678)
T ss_pred             hhcCCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhH
Confidence            456788887888999999876 67777789999999999988764  557777777777887777 4445566667777 


Q ss_pred             HHHHHhcccCC-HHHHHHHHHHHHHhhcCCCcH---HHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCC
Q 008257           79 SCLINIMKSGN-MQAREAALKALNQISSCEPSA---KVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGH  154 (572)
Q Consensus        79 ~~Lv~lL~s~~-~~~~~~A~~aL~~Ls~~~~~~---~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~  154 (572)
                      +.|.++|.+.+ ..+.+..+++++.+....+..   ....+...++.+..+++-..     ....+.-+...++++. ..
T Consensus        98 l~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~l-----k~~~~l~~~~~a~~s~-~~  171 (678)
T KOG1293|consen   98 LKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIEL-----KYISRLDVSRAAHLSS-TK  171 (678)
T ss_pred             HHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhh-----hhhhhhhhhhhccccc-cc
Confidence            99999999888 778999999999999765443   33345666776666665111     1222222222223322 11


Q ss_pred             CCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHH---HccCC-CCccHHHHHHHHhcCChH--HHHHHhcC
Q 008257          155 DFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLV---GLTSS-PTTVLSVVSAIKSSGATI--SLVQFVEA  228 (572)
Q Consensus       155 ~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~---~l~~~-~~~~~~~~~~i~~~g~i~--~Lv~lL~~  228 (572)
                              .+...+...|+...+.-++...+...+..|+..+.   .+..+ +.............|..+  ..-++++.
T Consensus       172 --------~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~  243 (678)
T KOG1293|consen  172 --------DHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKD  243 (678)
T ss_pred             --------hhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhC
Confidence                    12235666777777777777667788888888888   54443 333233334444555555  56678888


Q ss_pred             CCHHHHHHHHHHHHHcCCCCChhH----HHHHhcccC--Ch--hhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHH
Q 008257          229 PQNDLRLASIELIQNLSPHMGHEL----ADALRGAVG--QL--GSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQ  300 (572)
Q Consensus       229 ~~~~v~~~a~~~L~~Ls~~~~~~~----~~~i~~~~g--~l--~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~  300 (572)
                      ++...+-.++..+.++.....++.    ...+.+. |  -+  -..+.++..|.-  ..-..+..+.+.++.--..++..
T Consensus       244 ~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dm-gd~~i~q~~~i~l~~~P~~--s~l~~~~~l~c~~a~~~sklq~~  320 (678)
T KOG1293|consen  244 PDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDM-GDSLIVQYNCIVLMNDPGL--STLDHTNVLFCILARFASKLQLP  320 (678)
T ss_pred             CCccHHHHHHHHHHHHHhccccccccccceeeccC-chHHHHHHhhheeecCCce--eehhhhhhhHHHHHHHHHhhhhH
Confidence            887777666666555542211110    0011111 1  00  011122222221  11111222222222112234456


Q ss_pred             HHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHH
Q 008257          301 MLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMV  380 (572)
Q Consensus       301 l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~  380 (572)
                      ..++..++.++.++.....-.. +......+.-+-...+..++..  ..-..++.+.+.-....+..+.... +......
T Consensus       321 ~~e~~~~~~~~ellf~~~sl~a-~~~~~~~i~l~e~~i~~~~~~~--~~i~~~k~~l~~~t~~~l~~~~~~k-d~~~~aa  396 (678)
T KOG1293|consen  321 QHEEATLKTTTELLFICASLAA-SDEKYRLILLNETLILNHLEYG--LEISLKKEILETTTESHLMCLPPIK-DHDFVAA  396 (678)
T ss_pred             HhhhhhhhhHHHHHHHHHHHhh-cchhhhHHHhhhhhhhhhhhhh--cchhHHHHHHHHHHHHHHccccccc-cHHHHHH
Confidence            6788888888888875321000 0000000000000111111111  1223455555544444444444444 5666655


Q ss_pred             HHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHH
Q 008257          381 SATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVV  460 (572)
Q Consensus       381 Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~  460 (572)
                      |+..+.+++++...++.                                      .  +-+..+..|||++|..++..|.
T Consensus       397 a~l~~~s~srsV~aL~t--------------------------------------g--~~~~dv~~plvqll~dp~~~i~  436 (678)
T KOG1293|consen  397 ALLCLKSFSRSVSALRT--------------------------------------G--LKRNDVAQPLVQLLMDPEIMIM  436 (678)
T ss_pred             HHHHHHHHHHHHHHHHc--------------------------------------C--CccchhHHHHHHHhhCcchhHH
Confidence            55666677665543322                                      1  1245689999999999999999


Q ss_pred             HHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcchhhhhhhcCCCCch-HHHHHH
Q 008257          461 EASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVS-TALVDA  539 (572)
Q Consensus       461 ~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~-~~Lv~l  539 (572)
                      ..+++||+|++.+-.   +....+.+.|||+.+..++ .+.+...+..+.|+|..+.-+.+...++.....++ .-|+.+
T Consensus       437 ~~~lgai~NlVmefs---~~kskfl~~ngId~l~s~~-~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l  512 (678)
T KOG1293|consen  437 GITLGAICNLVMEFS---NLKSKFLRNNGIDILESML-TDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDL  512 (678)
T ss_pred             HHHHHHHHHHHhhcc---cHHHHHHHcCcHHHHHHHh-cCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHH
Confidence            999999999997643   3456788999999999999 59999999999999998874422222222222344 578888


Q ss_pred             hhcCCchhHHHHHHHHHhhcc
Q 008257          540 FQHADYRTRQIAERALKHIDK  560 (572)
Q Consensus       540 l~~~~~~~~~~Aa~aL~~L~~  560 (572)
                      ..+++..||+-+-..|+||.=
T Consensus       513 ~nd~d~~Vqeq~fqllRNl~c  533 (678)
T KOG1293|consen  513 INDPDWAVQEQCFQLLRNLTC  533 (678)
T ss_pred             HhCCCHHHHHHHHHHHHHhhc
Confidence            999999999999998888864

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.53  E-value=4e-13  Score=129.35  Aligned_cols=196  Identities=19%  Similarity=0.280  Sum_probs=164.7

Q ss_pred             HHcCCcHHHHHHHccC-CHHHHHHHHHHHHHhccCcchhHHHHhhhH-HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcH
Q 008257           33 AENGRLQPLLTQILEG-PQETKLSLAAFLGDLALNSDVKVLVARTVG-SCLINIMKSGNMQAREAALKALNQISSCEPSA  110 (572)
Q Consensus        33 ~~~g~i~~Lv~~L~~~-~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~  110 (572)
                      .+++-+++|+.+|+.. ++..+..+..++++.+..+.++..|.+.|+ +.+.++|+++++.+++.|+++|.|++.+.+|.
T Consensus         9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~   88 (254)
T PF04826_consen    9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ   88 (254)
T ss_pred             cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence            5677789999999954 688999999999999999999999999988 99999999999999999999999999999998


Q ss_pred             HHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHH
Q 008257          111 KVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIEC  190 (572)
Q Consensus       111 ~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~  190 (572)
                      ..|-.  .|+.+++...+..   .+..+|..+..+|.||+..+.. .         .+. .+.++.++++|.+++..+|.
T Consensus        89 ~~Ik~--~i~~Vc~~~~s~~---lns~~Q~agLrlL~nLtv~~~~-~---------~~l-~~~i~~ll~LL~~G~~~~k~  152 (254)
T PF04826_consen   89 EQIKM--YIPQVCEETVSSP---LNSEVQLAGLRLLTNLTVTNDY-H---------HML-ANYIPDLLSLLSSGSEKTKV  152 (254)
T ss_pred             HHHHH--HHHHHHHHHhcCC---CCCHHHHHHHHHHHccCCCcch-h---------hhH-HhhHHHHHHHHHcCChHHHH
Confidence            77643  5888888665542   2368899999999999754322 1         122 35799999999999999999


Q ss_pred             HHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCC-CHHHHHHHHHHHHHcCCCC
Q 008257          191 KLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAP-QNDLRLASIELIQNLSPHM  248 (572)
Q Consensus       191 ~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~a~~~L~~Ls~~~  248 (572)
                      +++++|.+|+.++.    ..+.+..+++++.++.|++.+ +.++...++..+.|+..+-
T Consensus       153 ~vLk~L~nLS~np~----~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~  207 (254)
T PF04826_consen  153 QVLKVLVNLSENPD----MTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENI  207 (254)
T ss_pred             HHHHHHHHhccCHH----HHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhh
Confidence            99999999999974    455667789999999999886 4688889999999997653

>PRK09687 putative lyase; Provisional

Probab=99.51  E-value=3.7e-12  Score=125.42  Aligned_cols=253  Identities=11%  Similarity=0.083  Sum_probs=195.6

Q ss_pred             CcHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhH-HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHH
Q 008257           37 RLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVG-SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIH  115 (572)
Q Consensus        37 ~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~  115 (572)
                      -+++|+.+|.+.+..+|..++.+|..+..          ..+ +.+..++.++++.+|..|+++|..|-..+..     .
T Consensus        24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~   88 (280)
T PRK09687         24 NDDELFRLLDDHNSLKRISSIRVLQLRGG----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----Q   88 (280)
T ss_pred             cHHHHHHHHhCCCHHHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----h
Confidence            48999999999999999999999985542          334 8899999999999999999999998653321     2


Q ss_pred             cCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHH
Q 008257          116 AGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQV  195 (572)
Q Consensus       116 ~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~a  195 (572)
                      .-++|.|..++..    +.++.++..|+.+|+++......+             ...++..+...+.++++.++..++++
T Consensus        89 ~~a~~~L~~l~~~----D~d~~VR~~A~~aLG~~~~~~~~~-------------~~~a~~~l~~~~~D~~~~VR~~a~~a  151 (280)
T PRK09687         89 DNVFNILNNLALE----DKSACVRASAINATGHRCKKNPLY-------------SPKIVEQSQITAFDKSTNVRFAVAFA  151 (280)
T ss_pred             HHHHHHHHHHHhc----CCCHHHHHHHHHHHhccccccccc-------------chHHHHHHHHHhhCCCHHHHHHHHHH
Confidence            2367888877543    234889999999999996432211             23457777788888899999999999


Q ss_pred             HHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCC
Q 008257          196 LVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVG  275 (572)
Q Consensus       196 L~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~  275 (572)
                      |..+..              ..+++.|+.+|+++++.+|..|+.+|..+..+. .          .+++.|+.+|..++.
T Consensus       152 Lg~~~~--------------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~-~----------~~~~~L~~~L~D~~~  206 (280)
T PRK09687        152 LSVIND--------------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDN-P----------DIREAFVAMLQDKNE  206 (280)
T ss_pred             HhccCC--------------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC-H----------HHHHHHHHHhcCCCh
Confidence            965531              237899999999999999999999999884331 1          245788999987775


Q ss_pred             ChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHH
Q 008257          276 ISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIAL  355 (572)
Q Consensus       276 ~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~  355 (572)
                        .++..|+..|+.+-.           ..++|+|+..|.+..            +...++.+|..+.     ++     
T Consensus       207 --~VR~~A~~aLg~~~~-----------~~av~~Li~~L~~~~------------~~~~a~~ALg~ig-----~~-----  251 (280)
T PRK09687        207 --EIRIEAIIGLALRKD-----------KRVLSVLIKELKKGT------------VGDLIIEAAGELG-----DK-----  251 (280)
T ss_pred             --HHHHHHHHHHHccCC-----------hhHHHHHHHHHcCCc------------hHHHHHHHHHhcC-----CH-----
Confidence              899999999988632           156899999998621            2446888888886     44     


Q ss_pred             HHHcCchHHHHHHhc-cCCcHHHHHHHHHHHH
Q 008257          356 CCEHNLAALFIELLQ-SNGLDKVQMVSATALE  386 (572)
Q Consensus       356 i~~~g~i~~Lv~lL~-~~~~~~vk~~Aa~aL~  386 (572)
                          -++|.|..+++ .+ +..++..|.++|.
T Consensus       252 ----~a~p~L~~l~~~~~-d~~v~~~a~~a~~  278 (280)
T PRK09687        252 ----TLLPVLDTLLYKFD-DNEIITKAIDKLK  278 (280)
T ss_pred             ----hHHHHHHHHHhhCC-ChhHHHHHHHHHh
Confidence                25799999998 56 9999999988874

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.50  E-value=1.7e-12  Score=125.05  Aligned_cols=190  Identities=13%  Similarity=0.167  Sum_probs=153.9

Q ss_pred             hHHHHHHhccc-CCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCC
Q 008257           77 VGSCLINIMKS-GNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHD  155 (572)
Q Consensus        77 g~~~Lv~lL~s-~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~  155 (572)
                      ..+.|+.+|++ .++..|+.|..++.+.+.++.+++.|.+.|+++.+..+|..++     +.+|+.|.++|.|++.+.++
T Consensus        13 ~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~-----~~vr~~AL~aL~Nls~~~en   87 (254)
T PF04826_consen   13 ELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPN-----PSVREKALNALNNLSVNDEN   87 (254)
T ss_pred             HHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCC-----hHHHHHHHHHHHhcCCChhh
Confidence            34999999995 6899999999999999999999999999999999999998753     89999999999999876543


Q ss_pred             CCccccCCCccccchhhhHHHHHHHHhcC--ChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHH
Q 008257          156 FDSITVGPDNQTLVSEDIVHNLLHLISNT--GPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDL  233 (572)
Q Consensus       156 ~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~--~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v  233 (572)
                      ..           .-+..|+.+.+.+.+.  +.++|..++++|.+++-.++.    +..+.  +.++.|+++|..++..+
T Consensus        88 ~~-----------~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~----~~~l~--~~i~~ll~LL~~G~~~~  150 (254)
T PF04826_consen   88 QE-----------QIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY----HHMLA--NYIPDLLSLLSSGSEKT  150 (254)
T ss_pred             HH-----------HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch----hhhHH--hhHHHHHHHHHcCChHH
Confidence            22           2244678887766653  678999999999999876543    44443  47999999999999999


Q ss_pred             HHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCC
Q 008257          234 RLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPE  292 (572)
Q Consensus       234 ~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~  292 (572)
                      |.+++++|.+||...  ...+.+... .++..++.++..+.+ .+....++..+.|+..
T Consensus       151 k~~vLk~L~nLS~np--~~~~~Ll~~-q~~~~~~~Lf~~~~~-~~~l~~~l~~~~ni~~  205 (254)
T PF04826_consen  151 KVQVLKVLVNLSENP--DMTRELLSA-QVLSSFLSLFNSSES-KENLLRVLTFFENINE  205 (254)
T ss_pred             HHHHHHHHHHhccCH--HHHHHHHhc-cchhHHHHHHccCCc-cHHHHHHHHHHHHHHH
Confidence            999999999999762  333455555 789999999988764 3777778888888744

>PRK09687 putative lyase; Provisional

Probab=99.49  E-value=5.7e-12  Score=124.12  Aligned_cols=257  Identities=14%  Similarity=0.084  Sum_probs=195.8

Q ss_pred             cCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHH
Q 008257          116 AGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQV  195 (572)
Q Consensus       116 ~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~a  195 (572)
                      .=-++.|+.+|.+.     +..++..|+++|..+-.                   ..+++.+..++.++++.++..++++
T Consensus        22 ~~~~~~L~~~L~d~-----d~~vR~~A~~aL~~~~~-------------------~~~~~~l~~ll~~~d~~vR~~A~~a   77 (280)
T PRK09687         22 KLNDDELFRLLDDH-----NSLKRISSIRVLQLRGG-------------------QDVFRLAIELCSSKNPIERDIGADI   77 (280)
T ss_pred             hccHHHHHHHHhCC-----CHHHHHHHHHHHHhcCc-------------------chHHHHHHHHHhCCCHHHHHHHHHH
Confidence            34578899999754     37899999999987732                   3468889999999999999999999


Q ss_pred             HHHccCCCCccHHHHHHHHhcCChHHHHHH-hcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCC
Q 008257          196 LVGLTSSPTTVLSVVSAIKSSGATISLVQF-VEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENV  274 (572)
Q Consensus       196 L~~l~~~~~~~~~~~~~i~~~g~i~~Lv~l-L~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~  274 (572)
                      |..+......         ....++.|..+ ++.+++.||..|+.+|.++........    .   .++..|...+..++
T Consensus        78 Lg~lg~~~~~---------~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~----~---~a~~~l~~~~~D~~  141 (280)
T PRK09687         78 LSQLGMAKRC---------QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYS----P---KIVEQSQITAFDKS  141 (280)
T ss_pred             HHhcCCCccc---------hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccc----h---HHHHHHHHHhhCCC
Confidence            9998654321         12367888877 677889999999999999864422110    0   24556667777776


Q ss_pred             CChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHH
Q 008257          275 GISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIA  354 (572)
Q Consensus       275 ~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~  354 (572)
                      .  .++..|+.+|+.+..           ..+++.|+.+|.+          .+..+...|+.+|.++..   .++    
T Consensus       142 ~--~VR~~a~~aLg~~~~-----------~~ai~~L~~~L~d----------~~~~VR~~A~~aLg~~~~---~~~----  191 (280)
T PRK09687        142 T--NVRFAVAFALSVIND-----------EAAIPLLINLLKD----------PNGDVRNWAAFALNSNKY---DNP----  191 (280)
T ss_pred             H--HHHHHHHHHHhccCC-----------HHHHHHHHHHhcC----------CCHHHHHHHHHHHhcCCC---CCH----
Confidence            4  899999999987642           1357899999986          245688889999988732   234    


Q ss_pred             HHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCcc
Q 008257          355 LCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLK  434 (572)
Q Consensus       355 ~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~  434 (572)
                           .+++.|+.+|.++ ++.|+..|+++|+.+-                                             
T Consensus       192 -----~~~~~L~~~L~D~-~~~VR~~A~~aLg~~~---------------------------------------------  220 (280)
T PRK09687        192 -----DIREAFVAMLQDK-NEEIRIEAIIGLALRK---------------------------------------------  220 (280)
T ss_pred             -----HHHHHHHHHhcCC-ChHHHHHHHHHHHccC---------------------------------------------
Confidence                 3468899999998 9999999999997642                                             


Q ss_pred             chhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHH
Q 008257          435 ETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVE  514 (572)
Q Consensus       435 ~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~  514 (572)
                            +..+||+|++.|.+++  +...|+.||+.+...              .++|.|.+++..++|+.++.+|.++|.
T Consensus       221 ------~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~--------------~a~p~L~~l~~~~~d~~v~~~a~~a~~  278 (280)
T PRK09687        221 ------DKRVLSVLIKELKKGT--VGDLIIEAAGELGDK--------------TLLPVLDTLLYKFDDNEIITKAIDKLK  278 (280)
T ss_pred             ------ChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH--------------hHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence                  2249999999999866  667899999987631              367899999965889999999999886


Q ss_pred             H
Q 008257          515 R  515 (572)
Q Consensus       515 ~  515 (572)
                      +
T Consensus       279 ~  279 (280)
T PRK09687        279 R  279 (280)
T ss_pred             c
Confidence            4

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.49  E-value=3.7e-11  Score=130.98  Aligned_cols=429  Identities=14%  Similarity=0.167  Sum_probs=303.6

Q ss_pred             CCCCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhHHHHHH
Q 008257            4 SKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLIN   83 (572)
Q Consensus         4 ~~s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~~~Lv~   83 (572)
                      ..|+|....+-+--.+..+...+.....+    .+..+.+-|.++++..|..|..+|.++...     .+.+.-.+.+.+
T Consensus        51 ~~s~~~~~Krl~yl~l~~~~~~~~~~~~l----~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~-----~~~~~l~~~v~~  121 (526)
T PF01602_consen   51 ISSKDLELKRLGYLYLSLYLHEDPELLIL----IINSLQKDLNSPNPYIRGLALRTLSNIRTP-----EMAEPLIPDVIK  121 (526)
T ss_dssp             CSSSSHHHHHHHHHHHHHHTTTSHHHHHH----HHHHHHHHHCSSSHHHHHHHHHHHHHH-SH-----HHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHHhhcchhHHHH----HHHHHHHhhcCCCHHHHHHHHhhhhhhccc-----chhhHHHHHHHH
Confidence            45889998888888888888766554444    567788889999999999999999987731     233333499999


Q ss_pred             hcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCC
Q 008257           84 IMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGP  163 (572)
Q Consensus        84 lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~  163 (572)
                      +|.++++.+|..|+.++.++....+.  .+-.. .++.+.++|.+.     ++.++..|..++..+ ...+...      
T Consensus       122 ll~~~~~~VRk~A~~~l~~i~~~~p~--~~~~~-~~~~l~~lL~d~-----~~~V~~~a~~~l~~i-~~~~~~~------  186 (526)
T PF01602_consen  122 LLSDPSPYVRKKAALALLKIYRKDPD--LVEDE-LIPKLKQLLSDK-----DPSVVSAALSLLSEI-KCNDDSY------  186 (526)
T ss_dssp             HHHSSSHHHHHHHHHHHHHHHHHCHC--CHHGG-HHHHHHHHTTHS-----SHHHHHHHHHHHHHH-HCTHHHH------
T ss_pred             HhcCCchHHHHHHHHHHHHHhccCHH--HHHHH-HHHHHhhhccCC-----cchhHHHHHHHHHHH-ccCcchh------
Confidence            99999999999999999999865332  12223 699999999764     388999999999998 2211000      


Q ss_pred             CccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHH
Q 008257          164 DNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQN  243 (572)
Q Consensus       164 ~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~  243 (572)
                         .-.....+..|.+++...+|-.|..+++.|..++.....   ...   ....++.+..++++.++.++-.+++++..
T Consensus       187 ---~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~---~~~---~~~~i~~l~~~l~s~~~~V~~e~~~~i~~  257 (526)
T PF01602_consen  187 ---KSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPE---DAD---KNRIIEPLLNLLQSSSPSVVYEAIRLIIK  257 (526)
T ss_dssp             ---TTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHH---HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---hhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChh---hhh---HHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence               001234455556666788999999999999999876532   110   04578899999998889999999999998


Q ss_pred             cCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCC
Q 008257          244 LSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETR  323 (572)
Q Consensus       244 Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~  323 (572)
                      +....  .    +..  .+++.|+++|.+++.  .++..++..|..++...+.    .+.  .....+..+...      
T Consensus       258 l~~~~--~----~~~--~~~~~L~~lL~s~~~--nvr~~~L~~L~~l~~~~~~----~v~--~~~~~~~~l~~~------  315 (526)
T PF01602_consen  258 LSPSP--E----LLQ--KAINPLIKLLSSSDP--NVRYIALDSLSQLAQSNPP----AVF--NQSLILFFLLYD------  315 (526)
T ss_dssp             HSSSH--H----HHH--HHHHHHHHHHTSSSH--HHHHHHHHHHHHHCCHCHH----HHG--THHHHHHHHHCS------
T ss_pred             hhcch--H----HHH--hhHHHHHHHhhcccc--hhehhHHHHHHHhhcccch----hhh--hhhhhhheecCC------
Confidence            87552  2    222  478899999997774  7999999999999875422    222  233334455421      


Q ss_pred             CCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhc-cCCcHHHHHHHHHHHHHhhhhccccCCCCCCC
Q 008257          324 GSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQ-SNGLDKVQMVSATALENLSLESKNLTKLPELP  402 (572)
Q Consensus       324 ~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~  402 (572)
                         .+..++..++..|..++     ++.+.+.     +++.|.+.++ .+ ++.+++.++.++..++...+..       
T Consensus       316 ---~d~~Ir~~~l~lL~~l~-----~~~n~~~-----Il~eL~~~l~~~~-d~~~~~~~i~~I~~la~~~~~~-------  374 (526)
T PF01602_consen  316 ---DDPSIRKKALDLLYKLA-----NESNVKE-----ILDELLKYLSELS-DPDFRRELIKAIGDLAEKFPPD-------  374 (526)
T ss_dssp             ---SSHHHHHHHHHHHHHH-------HHHHHH-----HHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHGSS-------
T ss_pred             ---CChhHHHHHHHHHhhcc-----cccchhh-----HHHHHHHHHHhcc-chhhhhhHHHHHHHHHhccCch-------
Confidence               25667888999999998     5655554     4677788884 44 7779999999999987643210       


Q ss_pred             CCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHH
Q 008257          403 PSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVM  482 (572)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~  482 (572)
                                                            ..-.+..+++++..+++.+...+...+..+....+..   ..
T Consensus       375 --------------------------------------~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~---~~  413 (526)
T PF01602_consen  375 --------------------------------------AEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPEL---RE  413 (526)
T ss_dssp             --------------------------------------HHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTT---HH
T ss_pred             --------------------------------------HHHHHHHHHHhhhhccccccchHHHHHHHHhhcChhh---hH
Confidence                                                  1126788999999988999999999999998654311   11


Q ss_pred             HHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcchhh---hhhhcCCCCchHHHHHHhhcCCchhHHHHHHHHHhhc
Q 008257          483 VLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDI---AYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHID  559 (572)
Q Consensus       483 ~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~~~~---~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~  559 (572)
                      .     .+..+++.+.+..++.++..++|++..+....+.   ...      +...+++.+...++.+|...-.++..+.
T Consensus       414 ~-----~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~------~~~~l~~~~~~~~~~vk~~ilt~~~Kl~  482 (526)
T PF01602_consen  414 K-----ILKKLIELLEDISSPEALAAAIWILGEYGELIENTESAPD------ILRSLIENFIEESPEVKLQILTALAKLF  482 (526)
T ss_dssp             H-----HHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHH------HHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred             H-----HHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccccHHH------HHHHHHHhhccccHHHHHHHHHHHHHHH
Confidence            2     3677888886567788999999999998855222   111      1135666666677788888888887776


Q ss_pred             c
Q 008257          560 K  560 (572)
Q Consensus       560 ~  560 (572)
                      .
T Consensus       483 ~  483 (526)
T PF01602_consen  483 K  483 (526)
T ss_dssp             H
T ss_pred             h
Confidence            5

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.45  E-value=1.3e-10  Score=114.58  Aligned_cols=394  Identities=15%  Similarity=0.108  Sum_probs=267.7

Q ss_pred             CCCCCHHHHHHHHHHHHhhcc-CcchHHHHHHcCCcHHHHHHHcc----CCHH-HHH--HHHHHHHHhcc-CcchhHHHH
Q 008257            4 SKSENLLTVEKAEKTLANLEK-CENNVRQMAENGRLQPLLTQILE----GPQE-TKL--SLAAFLGDLAL-NSDVKVLVA   74 (572)
Q Consensus         4 ~~s~~~~~~~~A~~~L~~L~~-~~~n~~~i~~~g~i~~Lv~~L~~----~~~~-~~~--~aa~~L~~l~~-~~~~k~~i~   74 (572)
                      .+|+|.++.+...++|.|.++ +++++..+.+.|+-+.++..|+.    .++. .+.  -+...|.|... +++.+..+.
T Consensus        96 psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~  175 (604)
T KOG4500|consen   96 PSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVA  175 (604)
T ss_pred             CCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHH
Confidence            478899999999999999998 89999999999997777777753    2211 122  23456777777 667888999


Q ss_pred             hhhH-HHHHHhccc--CCHHHHHHHHHHHHHhhcC-CCc-HHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHH
Q 008257           75 RTVG-SCLINIMKS--GNMQAREAALKALNQISSC-EPS-AKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANV  149 (572)
Q Consensus        75 ~~g~-~~Lv~lL~s--~~~~~~~~A~~aL~~Ls~~-~~~-~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nl  149 (572)
                      +.|+ +.|+..+.-  .+.+..+.....-.||.+. .++ ...-.++..+.-|+++|.+.    ..+++.+...++|+..
T Consensus       176 ~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~----v~~d~~eM~feila~~  251 (604)
T KOG4500|consen  176 DAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSM----VREDIDEMIFEILAKA  251 (604)
T ss_pred             hcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHh----hccchhhHHHHHHHHH
Confidence            9999 999988764  4455566666666777653 232 44455788888999999875    3478899999999999


Q ss_pred             HhcCCCCCccccCCCccccchhhhHHHHHHHHhc-CChhHHHH-------HHHHHHHccCCCCccHHHHHHHHhcC-ChH
Q 008257          150 VNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISN-TGPTIECK-------LLQVLVGLTSSPTTVLSVVSAIKSSG-ATI  220 (572)
Q Consensus       150 a~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~-~~~~~q~~-------a~~aL~~l~~~~~~~~~~~~~i~~~g-~i~  220 (572)
                      +.++.  .       .-.+...|.+..++++++. .+..-+..       ++....-+....   +..++. .+.+ .+.
T Consensus       252 aend~--V-------kl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGD---eSMq~L-~~~p~~l~  318 (604)
T KOG4500|consen  252 AENDL--V-------KLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGD---ESMQKL-HADPQFLD  318 (604)
T ss_pred             hcCcc--e-------eeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCc---hHHHHH-hcCcHHHH
Confidence            87643  1       1246778888888888875 21111111       111111122221   123333 2333 688


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCC---ChHHHHHHHHHHhcCCCCcHHH
Q 008257          221 SLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVG---ISKEQAAAVGLLAELPERDLGL  297 (572)
Q Consensus       221 ~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~---~~~~~~~A~~~L~~L~~~~~~~  297 (572)
                      .++.++++.|.+.+-.+.-++.|+++.+...+  .+.+. |.+..|+++|...++   ..+.+-++..+|+|+.. ...+
T Consensus       319 ~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci--~~v~~-~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~I-Pv~n  394 (604)
T KOG4500|consen  319 FLESWFRSDDSNLITMGSLAIGNFARRDDICI--QLVQK-DFLNKLISCLMQEKDVDGNVERQHACLSALRNLMI-PVSN  394 (604)
T ss_pred             HHHHHhcCCchhHHHHHHHHHHhhhccchHHH--HHHHH-HHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccc-cCCc
Confidence            89999999999999999999999998865444  56666 899999999976332   23778899999999987 4456


Q ss_pred             HHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCC---c
Q 008257          298 TRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNG---L  374 (572)
Q Consensus       298 ~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~---~  374 (572)
                      +..+..+|..+.++..++..          .+++.-..++.+..+..+   -+.   ...+.+-=|.+++-|..+.   +
T Consensus       395 ka~~~~aGvteaIL~~lk~~----------~ppv~fkllgTlrM~~d~---qe~---~a~eL~kn~~l~ekLv~Wsks~D  458 (604)
T KOG4500|consen  395 KAHFAPAGVTEAILLQLKLA----------SPPVTFKLLGTLRMIRDS---QEY---IACELAKNPELFEKLVDWSKSPD  458 (604)
T ss_pred             hhhccccchHHHHHHHHHhc----------CCcchHHHHHHHHHHHhc---hHH---HHHHHhcCHHHHHHHHHhhhCCc
Confidence            67899999999999999862          455677788887766521   111   2223333344444444330   2


Q ss_pred             HH-HHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhc
Q 008257          375 DK-VQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLD  453 (572)
Q Consensus       375 ~~-vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~  453 (572)
                      .. +--+.-+.+..+.+++....                                      -...+.+.|+|+.+|.++.
T Consensus       459 ~aGv~gESnRll~~lIkHs~~kd--------------------------------------v~~tvpksg~ik~~Vsm~t  500 (604)
T KOG4500|consen  459 FAGVAGESNRLLLGLIKHSKYKD--------------------------------------VILTVPKSGGIKEKVSMFT  500 (604)
T ss_pred             cchhhhhhhHHHHHHHHhhHhhh--------------------------------------hHhhccccccHHHHHHHHH
Confidence            22 44444455555555432110                                      0112457889999999999


Q ss_pred             CCCHhHHHHHHHHHHHhhh
Q 008257          454 HTNEKVVEASLAALSTVID  472 (572)
Q Consensus       454 ~~~~~v~~~A~~aL~~l~~  472 (572)
                      ..+-..+..|+-||+.+..
T Consensus       501 ~~hi~mqnEalVal~~~~~  519 (604)
T KOG4500|consen  501 KNHINMQNEALVALLSTES  519 (604)
T ss_pred             HhhHHHhHHHHHHHHHHHH
Confidence            9999999999999998764

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.44  E-value=4e-11  Score=137.36  Aligned_cols=276  Identities=15%  Similarity=0.132  Sum_probs=213.4

Q ss_pred             HcCCcHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhH-HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHH
Q 008257           34 ENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVG-SCLINIMKSGNMQAREAALKALNQISSCEPSAKV  112 (572)
Q Consensus        34 ~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~  112 (572)
                      ..+.++.|+..|.+.++.+|+.|+..|..+..          ... +.|+.+|+.+++.++..|+.+|..+.....    
T Consensus       619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~----  684 (897)
T PRK13800        619 DAPSVAELAPYLADPDPGVRRTAVAVLTETTP----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP----  684 (897)
T ss_pred             cchhHHHHHHHhcCCCHHHHHHHHHHHhhhcc----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC----
Confidence            44567899999999999999999999986542          234 999999999999999999999998853221    


Q ss_pred             HHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHH
Q 008257          113 LIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKL  192 (572)
Q Consensus       113 iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a  192 (572)
                           ..+.|...|.+.     ++.+|..|+.+|..+..                    +....|+..|.++++.++..|
T Consensus       685 -----~~~~L~~~L~~~-----d~~VR~~A~~aL~~~~~--------------------~~~~~l~~~L~D~d~~VR~~A  734 (897)
T PRK13800        685 -----PAPALRDHLGSP-----DPVVRAAALDVLRALRA--------------------GDAALFAAALGDPDHRVRIEA  734 (897)
T ss_pred             -----chHHHHHHhcCC-----CHHHHHHHHHHHHhhcc--------------------CCHHHHHHHhcCCCHHHHHHH
Confidence                 236788888753     37899999998887732                    113567889999999999999


Q ss_pred             HHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhcc
Q 008257          193 LQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISE  272 (572)
Q Consensus       193 ~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~  272 (572)
                      +++|..+.                 ..+.|..++.++++.+|..++.+|..+.....           ..++.|..++..
T Consensus       735 v~aL~~~~-----------------~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~-----------~~~~~L~~ll~D  786 (897)
T PRK13800        735 VRALVSVD-----------------DVESVAGAATDENREVRIAVAKGLATLGAGGA-----------PAGDAVRALTGD  786 (897)
T ss_pred             HHHHhccc-----------------CcHHHHHHhcCCCHHHHHHHHHHHHHhccccc-----------hhHHHHHHHhcC
Confidence            99887641                 23456788999999999999999988864421           246788888888


Q ss_pred             CCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHH
Q 008257          273 NVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDA  352 (572)
Q Consensus       273 ~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~  352 (572)
                      ++.  .++..|+..|..+... ..         .++.++..|.+          .+..++..|+.+|..+.     ++  
T Consensus       787 ~d~--~VR~aA~~aLg~~g~~-~~---------~~~~l~~aL~d----------~d~~VR~~Aa~aL~~l~-----~~--  837 (897)
T PRK13800        787 PDP--LVRAAALAALAELGCP-PD---------DVAAATAALRA----------SAWQVRQGAARALAGAA-----AD--  837 (897)
T ss_pred             CCH--HHHHHHHHHHHhcCCc-ch---------hHHHHHHHhcC----------CChHHHHHHHHHHHhcc-----cc--
Confidence            875  8999999999987542 11         12456677765          24567888999998775     22  


Q ss_pred             HHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccC
Q 008257          353 IALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCS  432 (572)
Q Consensus       353 ~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~  432 (572)
                             ..++.|+.+|+++ +..||..|+.+|..+..                                          
T Consensus       838 -------~a~~~L~~~L~D~-~~~VR~~A~~aL~~~~~------------------------------------------  867 (897)
T PRK13800        838 -------VAVPALVEALTDP-HLDVRKAAVLALTRWPG------------------------------------------  867 (897)
T ss_pred             -------chHHHHHHHhcCC-CHHHHHHHHHHHhccCC------------------------------------------
Confidence                   2359999999999 99999999999976511                                          


Q ss_pred             ccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHH
Q 008257          433 LKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALS  468 (572)
Q Consensus       433 ~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~  468 (572)
                              +....+.|...|++.+..|+..|..||.
T Consensus       868 --------~~~a~~~L~~al~D~d~~Vr~~A~~aL~  895 (897)
T PRK13800        868 --------DPAARDALTTALTDSDADVRAYARRALA  895 (897)
T ss_pred             --------CHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence                    1126788999999999999999999986

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.43  E-value=4.1e-11  Score=137.23  Aligned_cols=278  Identities=15%  Similarity=0.151  Sum_probs=209.5

Q ss_pred             HcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHH
Q 008257          115 HAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQ  194 (572)
Q Consensus       115 ~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~  194 (572)
                      +.+.++.|++.|.+.     ++.+|..|+.+|+.+..                   +.+++.|+..|++++++++..|+.
T Consensus       619 ~~~~~~~L~~~L~D~-----d~~VR~~Av~~L~~~~~-------------------~~~~~~L~~aL~D~d~~VR~~Aa~  674 (897)
T PRK13800        619 DAPSVAELAPYLADP-----DPGVRRTAVAVLTETTP-------------------PGFGPALVAALGDGAAAVRRAAAE  674 (897)
T ss_pred             cchhHHHHHHHhcCC-----CHHHHHHHHHHHhhhcc-------------------hhHHHHHHHHHcCCCHHHHHHHHH
Confidence            566788999999753     48899999999887632                   346899999999999999999998


Q ss_pred             HHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCC
Q 008257          195 VLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENV  274 (572)
Q Consensus       195 aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~  274 (572)
                      +|..+....             ...+.|...|.++++.+|..|+.+|..+...              ....|++.|..++
T Consensus       675 aL~~l~~~~-------------~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~--------------~~~~l~~~L~D~d  727 (897)
T PRK13800        675 GLRELVEVL-------------PPAPALRDHLGSPDPVVRAAALDVLRALRAG--------------DAALFAAALGDPD  727 (897)
T ss_pred             HHHHHHhcc-------------CchHHHHHHhcCCCHHHHHHHHHHHHhhccC--------------CHHHHHHHhcCCC
Confidence            887664321             1235677888888999999999888876422              2245667787777


Q ss_pred             CChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHH
Q 008257          275 GISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIA  354 (572)
Q Consensus       275 ~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~  354 (572)
                      .  .++..|+.+|..+..              .+.|..++.+          .+..++..++.+|..+..     .    
T Consensus       728 ~--~VR~~Av~aL~~~~~--------------~~~l~~~l~D----------~~~~VR~~aa~aL~~~~~-----~----  772 (897)
T PRK13800        728 H--RVRIEAVRALVSVDD--------------VESVAGAATD----------ENREVRIAVAKGLATLGA-----G----  772 (897)
T ss_pred             H--HHHHHHHHHHhcccC--------------cHHHHHHhcC----------CCHHHHHHHHHHHHHhcc-----c----
Confidence            5  899999999887522              2345566665          246778888888887752     1    


Q ss_pred             HHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCcc
Q 008257          355 LCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLK  434 (572)
Q Consensus       355 ~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~  434 (572)
                         +...++.|..+++++ ++.||..|+.+|..+..                                            
T Consensus       773 ---~~~~~~~L~~ll~D~-d~~VR~aA~~aLg~~g~--------------------------------------------  804 (897)
T PRK13800        773 ---GAPAGDAVRALTGDP-DPLVRAAALAALAELGC--------------------------------------------  804 (897)
T ss_pred             ---cchhHHHHHHHhcCC-CHHHHHHHHHHHHhcCC--------------------------------------------
Confidence               112368899999998 89999999999976521                                            


Q ss_pred             chhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHH
Q 008257          435 ETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVE  514 (572)
Q Consensus       435 ~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~  514 (572)
                            ....+++|+..|.+.+..|+..|+.+|..+...              .+++.|+.+| .+++..++..|+++|.
T Consensus       805 ------~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~--------------~a~~~L~~~L-~D~~~~VR~~A~~aL~  863 (897)
T PRK13800        805 ------PPDDVAAATAALRASAWQVRQGAARALAGAAAD--------------VAVPALVEAL-TDPHLDVRKAAVLALT  863 (897)
T ss_pred             ------cchhHHHHHHHhcCCChHHHHHHHHHHHhcccc--------------chHHHHHHHh-cCCCHHHHHHHHHHHh
Confidence                  011446789999999999999999999977521              2458899999 5999999999999998


Q ss_pred             HHHcchhhhhhhcCCCCchHHHHHHhhcCCchhHHHHHHHHHh
Q 008257          515 RILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKH  557 (572)
Q Consensus       515 ~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~  557 (572)
                      ++-..+          .....|...+.+.|..||+.|.+||.+
T Consensus       864 ~~~~~~----------~a~~~L~~al~D~d~~Vr~~A~~aL~~  896 (897)
T PRK13800        864 RWPGDP----------AARDALTTALTDSDADVRAYARRALAH  896 (897)
T ss_pred             ccCCCH----------HHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence            862111          122478899999999999999999975

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.41  E-value=1.2e-10  Score=115.93  Aligned_cols=377  Identities=15%  Similarity=0.203  Sum_probs=255.9

Q ss_pred             HHHHHHHhccCcchhHHHHhhhH-HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCC
Q 008257           56 LAAFLGDLALNSDVKVLVARTVG-SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHL  134 (572)
Q Consensus        56 aa~~L~~l~~~~~~k~~i~~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~  134 (572)
                      |...|.|++.+-..-...++..+ ..||+.|.-++.+.-......|..|+-..+|+..|.+.|.|..|+++..+.+    
T Consensus       283 a~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h----  358 (791)
T KOG1222|consen  283 AVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQH----  358 (791)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCC----
Confidence            44567778776555556667777 9999999999999999999999999999999999999999999999997754    


Q ss_pred             CcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHH
Q 008257          135 PMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIK  214 (572)
Q Consensus       135 ~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~  214 (572)
                       ++++......|.|++..+                                                      ..|..|+
T Consensus       359 -~dL~~~tl~LlfNlSFD~------------------------------------------------------glr~KMv  383 (791)
T KOG1222|consen  359 -PDLRKATLMLLFNLSFDS------------------------------------------------------GLRPKMV  383 (791)
T ss_pred             -HHHHHHHHHHhhhccccc------------------------------------------------------cccHHHh
Confidence             677777777777775422                                                      2467788


Q ss_pred             hcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCc
Q 008257          215 SSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERD  294 (572)
Q Consensus       215 ~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~  294 (572)
                      ..|-+|.|+.+|.+++.  ..-|++.|..++-++...  ..+... .+|+.|++.+-++.. .++-.+-+..--||+. +
T Consensus       384 ~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~~K--~MfayT-dci~~lmk~v~~~~~-~~vdl~lia~ciNl~l-n  456 (791)
T KOG1222|consen  384 NGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDDAK--AMFAYT-DCIKLLMKDVLSGTG-SEVDLALIALCINLCL-N  456 (791)
T ss_pred             hccchHHHHHHhCCccc--chhhhhhhhhhccCcHHH--HHHHHH-HHHHHHHHHHHhcCC-ceecHHHHHHHHHHHh-c
Confidence            89999999999987653  456778888887543221  123333 789999998876654 2443333333346666 5


Q ss_pred             HHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCc
Q 008257          295 LGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGL  374 (572)
Q Consensus       295 ~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~  374 (572)
                      ..+.+.+++..++..|...--..+          ..+   ....+.+++++   +...+..+++  .+.-|...++...+
T Consensus       457 kRNaQlvceGqgL~~LM~ra~k~~----------D~l---LmK~vRniSqH---eg~tqn~Fid--yvgdLa~i~~nd~~  518 (791)
T KOG1222|consen  457 KRNAQLVCEGQGLDLLMERAIKSR----------DLL---LMKVVRNISQH---EGATQNMFID--YVGDLAGIAKNDNS  518 (791)
T ss_pred             cccceEEecCcchHHHHHHHhccc----------chH---HHHHHHHhhhc---cchHHHHHHH--HHHHHHHHhhcCch
Confidence            555678888888887765432211          111   33344556653   3333444433  34556666666534


Q ss_pred             HHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcC
Q 008257          375 DKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDH  454 (572)
Q Consensus       375 ~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~  454 (572)
                      +..-.+....|+|+.-.+..+.++                                        +.+..-||-+-..|..
T Consensus       519 E~F~~EClGtlanL~v~dldw~~i----------------------------------------lq~~~LvPw~k~~L~p  558 (791)
T KOG1222|consen  519 ESFGLECLGTLANLKVTDLDWAKI----------------------------------------LQSENLVPWMKTQLQP  558 (791)
T ss_pred             HHHHHHHHHHHhhcccCCCCHHHH----------------------------------------HhhccccHHHHHhhcC
Confidence            444455666666665433322221                                        2234455655555543


Q ss_pred             --CCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcC-CHHHHHHHHHHHHHHHcchhhhhhhcCCCC
Q 008257          455 --TNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKR-TENLQRRAVWVVERILRTDDIAYEVSGDPN  531 (572)
Q Consensus       455 --~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~  531 (572)
                        ...+.+...+-++++++.|.    ..+..+..+|-|+.++++|+..+ |+++......++..+..|+-.++-......
T Consensus       559 ga~eddLvL~~vi~~GT~a~d~----~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr~~miket~  634 (791)
T KOG1222|consen  559 GADEDDLVLQIVIACGTMARDL----DCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTRRLMIKETA  634 (791)
T ss_pred             CccchhhhhHHHHHhhhhhhhh----HHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence              34467777888899998764    45677888999999999996433 456667777888888889766665544444


Q ss_pred             chHHHHHHhhcCCchhHHHHHHHHHhhcc
Q 008257          532 VSTALVDAFQHADYRTRQIAERALKHIDK  560 (572)
Q Consensus       532 ~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~~  560 (572)
                      .+.-|++++++.+.++|+..-.+|--++.
T Consensus       635 ~~AylIDLMHDkN~eiRkVCDn~LdIiae  663 (791)
T KOG1222|consen  635 LGAYLIDLMHDKNAEIRKVCDNALDIIAE  663 (791)
T ss_pred             chHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            44589999999999999988888876654

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.28  E-value=2.4e-09  Score=116.76  Aligned_cols=287  Identities=15%  Similarity=0.187  Sum_probs=194.4

Q ss_pred             HHHHHccC--CHHHHHHHHHHHHHh-ccCcchhHHHHhhhHHHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcC
Q 008257           41 LLTQILEG--PQETKLSLAAFLGDL-ALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAG  117 (572)
Q Consensus        41 Lv~~L~~~--~~~~~~~aa~~L~~l-~~~~~~k~~i~~~g~~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G  117 (572)
                      +.+.+.+.  +...+.++..-|.-+ ....+..     .|.+..++++.+.+...++-+.-++..+...++..-.+    
T Consensus         9 l~~~~~~~~~~~~~~~~~l~kli~~~~~G~~~~-----~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l----   79 (526)
T PF01602_consen    9 LAKILNSFKIDISKKKEALKKLIYLMMLGYDIS-----FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLIL----   79 (526)
T ss_dssp             HHHHHHCSSTHHHHHHHHHHHHHHHHHTT---G-----STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHH----
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHcCCCCc-----hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHH----
Confidence            34455544  444555554333322 2222221     34499999999999999999998888888765542222    


Q ss_pred             ChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHH
Q 008257          118 ILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLV  197 (572)
Q Consensus       118 ~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~  197 (572)
                      ++..|.+=|.++     ++.++..|..+|+++....               ..+..++.+.+++.++++.++..|+.++.
T Consensus        80 ~~n~l~kdl~~~-----n~~~~~lAL~~l~~i~~~~---------------~~~~l~~~v~~ll~~~~~~VRk~A~~~l~  139 (526)
T PF01602_consen   80 IINSLQKDLNSP-----NPYIRGLALRTLSNIRTPE---------------MAEPLIPDVIKLLSDPSPYVRKKAALALL  139 (526)
T ss_dssp             HHHHHHHHHCSS-----SHHHHHHHHHHHHHH-SHH---------------HHHHHHHHHHHHHHSSSHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcCC-----CHHHHHHHHhhhhhhcccc---------------hhhHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence            566666666653     3788999999999986421               22457888899999999999999999999


Q ss_pred             HccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCCh
Q 008257          198 GLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGIS  277 (572)
Q Consensus       198 ~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~  277 (572)
                      .+......      .+... .++.+..+|.++++.++..|+.++..+ +..++.....+.   ..+..|.+++..+++  
T Consensus       140 ~i~~~~p~------~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~---~~~~~L~~~l~~~~~--  206 (526)
T PF01602_consen  140 KIYRKDPD------LVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIP---KLIRILCQLLSDPDP--  206 (526)
T ss_dssp             HHHHHCHC------CHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHH---HHHHHHHHHHTCCSH--
T ss_pred             HHhccCHH------HHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHH---HHHHHhhhcccccch--
Confidence            88764321      11122 588999999989999999999999999 322221111122   245566666666665  


Q ss_pred             HHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHH
Q 008257          278 KEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCC  357 (572)
Q Consensus       278 ~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~  357 (572)
                      -.+...+.++..+...++.....   ...++.+..++++.          ...+.-.++.++..+.    .++.     .
T Consensus       207 ~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~----------~~~V~~e~~~~i~~l~----~~~~-----~  264 (526)
T PF01602_consen  207 WLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSS----------SPSVVYEAIRLIIKLS----PSPE-----L  264 (526)
T ss_dssp             HHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHS----SSHH-----H
T ss_pred             HHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhcc----------ccHHHHHHHHHHHHhh----cchH-----H
Confidence            67888899999988766555421   35678888888752          4556667888888776    2344     2


Q ss_pred             HcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhc
Q 008257          358 EHNLAALFIELLQSNGLDKVQMVSATALENLSLES  392 (572)
Q Consensus       358 ~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~  392 (572)
                      -..++++|+.+|.++ ++.+|..+..+|..++...
T Consensus       265 ~~~~~~~L~~lL~s~-~~nvr~~~L~~L~~l~~~~  298 (526)
T PF01602_consen  265 LQKAINPLIKLLSSS-DPNVRYIALDSLSQLAQSN  298 (526)
T ss_dssp             HHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHCCHC
T ss_pred             HHhhHHHHHHHhhcc-cchhehhHHHHHHHhhccc
Confidence            335678999999987 8889999999998887654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.28  E-value=4.9e-11  Score=102.28  Aligned_cols=115  Identities=22%  Similarity=0.298  Sum_probs=102.7

Q ss_pred             HHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccC-cchhHHHHhhhH-HHHHHhcccCCHHHHHHHHHHHHHhhcCCC
Q 008257           31 QMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALN-SDVKVLVARTVG-SCLINIMKSGNMQAREAALKALNQISSCEP  108 (572)
Q Consensus        31 ~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~-~~~k~~i~~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~  108 (572)
                      .+++.|++++|+++|++++...+..++.+|.+++.. ++.+..+.+.|+ |.|+++|+++++.++..|+++|.+|+.+.+
T Consensus         2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~   81 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE   81 (120)
T ss_pred             hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence            467899999999999999999999999999999985 777777777666 999999999999999999999999998764


Q ss_pred             -cHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHH
Q 008257          109 -SAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVV  150 (572)
Q Consensus       109 -~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla  150 (572)
                       ....+++.|+++.|+++|...     +..+++.++++|.||+
T Consensus        82 ~~~~~~~~~g~l~~l~~~l~~~-----~~~~~~~a~~~l~~l~  119 (120)
T cd00020          82 DNKLIVLEAGGVPKLVNLLDSS-----NEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHHHHHHCCChHHHHHHHhcC-----CHHHHHHHHHHHHHhh
Confidence             466678999999999999864     3789999999999996

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.20  E-value=9.1e-08  Score=105.65  Aligned_cols=466  Identities=14%  Similarity=0.121  Sum_probs=280.7

Q ss_pred             CCCCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccC-CHHHHHHHHHHHHHhccC------cchhHHHHhh
Q 008257            4 SKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEG-PQETKLSLAAFLGDLALN------SDVKVLVART   76 (572)
Q Consensus         4 ~~s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~-~~~~~~~aa~~L~~l~~~------~~~k~~i~~~   76 (572)
                      +.|.|.+++..|.++|.++...+.         .++.|..++..+ ++++|..||-.++++...      .++|..|.  
T Consensus        13 l~spDn~vr~~Ae~~l~~~~~~~~---------~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~sik--   81 (1075)
T KOG2171|consen   13 LLSPDNEVRRQAEEALETLAKTEP---------LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIK--   81 (1075)
T ss_pred             hcCCCchHHHHHHHHHHHhhcccc---------hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHH--
Confidence            457788889999999998887553         567777777754 578888888888877542      23333322  


Q ss_pred             hHHHHHHhccc-CCHHHHHHHHHHHHHhhcCC--CcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcC
Q 008257           77 VGSCLINIMKS-GNMQAREAALKALNQISSCE--PSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSG  153 (572)
Q Consensus        77 g~~~Lv~lL~s-~~~~~~~~A~~aL~~Ls~~~--~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~  153 (572)
                        ..|+....+ ..+.+++.-+.++..++.+.  +.|     .+.++.|++..+|+     ++..|+.|..+|+.+...-
T Consensus        82 --s~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~W-----Pell~~L~q~~~S~-----~~~~rE~al~il~s~~~~~  149 (1075)
T KOG2171|consen   82 --SSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKW-----PELLQFLFQSTKSP-----NPSLRESALLILSSLPETF  149 (1075)
T ss_pred             --HHHHHHHHhccchHHHHHHHHHHHHHHHhccccch-----HHHHHHHHHHhcCC-----CcchhHHHHHHHHhhhhhh
Confidence              555555555 45677888888888888752  222     23455555555554     4889999999999997532


Q ss_pred             CCCCccccCCCccccchhhhHHHHHHHH----hcCChhHHHHHHHHHHHccCCCCccHHHHHHHHh--cCChHHHHHHhc
Q 008257          154 HDFDSITVGPDNQTLVSEDIVHNLLHLI----SNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKS--SGATISLVQFVE  227 (572)
Q Consensus       154 ~~~~~~~~~~~~~~l~~~~~i~~Lv~lL----~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~--~g~i~~Lv~lL~  227 (572)
                      .+             ...+.++.+..++    ..++..++..+++++..++...++....+..++.  -+.+..+-..+.
T Consensus       150 ~~-------------~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~  216 (1075)
T KOG2171|consen  150 GN-------------TLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQ  216 (1075)
T ss_pred             cc-------------ccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhh
Confidence            21             1123344555555    4555569999999999887644221233344332  123334444555


Q ss_pred             CCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHh--CC
Q 008257          228 APQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLD--EG  305 (572)
Q Consensus       228 ~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~--~g  305 (572)
                      .++.+.-..+..+|-.+....+.-+...+.   ..+..-.++..+.+-....|..|+-.|..++..-+...+..-.  .-
T Consensus       217 ~~d~~~a~~~l~~l~El~e~~pk~l~~~l~---~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~  293 (1075)
T KOG2171|consen  217 DGDDDAAKSALEALIELLESEPKLLRPHLS---QIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHT  293 (1075)
T ss_pred             ccchHHHHHHHHHHHHHHhhchHHHHHHHH---HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhcc
Confidence            666666677778887777654433332332   2344445555554422478888988888877653333332222  11


Q ss_pred             ChHHHHHHHhhhccCCCCCC--c---ch-hhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHH
Q 008257          306 AFGLIFSRVKSIQLGETRGS--R---FV-TPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQM  379 (572)
Q Consensus       306 ~l~~Lv~lL~~~~~~~~~~~--~---~~-~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~  379 (572)
                      .++.++..+.+...+.-+..  .   .. ..-...|..+|-+++.++  .++..-    .-.++.+-.+|.++ +..-|.
T Consensus       294 lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L--~g~~v~----p~~~~~l~~~l~S~-~w~~R~  366 (1075)
T KOG2171|consen  294 LVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHL--GGKQVL----PPLFEALEAMLQST-EWKERH  366 (1075)
T ss_pred             HHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcC--Chhheh----HHHHHHHHHHhcCC-CHHHHH
Confidence            23333333332211100000  0   00 011234666777777664  233211    12345566777787 788888


Q ss_pred             HHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhH
Q 008257          380 VSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKV  459 (572)
Q Consensus       380 ~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v  459 (572)
                      .|..||..++....+.-.                                     ..    =...++-.+..|.++++.|
T Consensus       367 AaL~Als~i~EGc~~~m~-------------------------------------~~----l~~Il~~Vl~~l~DphprV  405 (1075)
T KOG2171|consen  367 AALLALSVIAEGCSDVMI-------------------------------------GN----LPKILPIVLNGLNDPHPRV  405 (1075)
T ss_pred             HHHHHHHHHHcccHHHHH-------------------------------------HH----HHHHHHHHHhhcCCCCHHH
Confidence            888898888764432211                                     00    0125667788899999999


Q ss_pred             HHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcc--hhhhhhhcCCCCch-HHH
Q 008257          460 VEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRT--DDIAYEVSGDPNVS-TAL  536 (572)
Q Consensus       460 ~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~--~~~~~~~~~~~~~~-~~L  536 (572)
                      +-+|+.|++.++.|-.   ...+.-...--++.|+..+...+++.++..|+.++-+++..  .+.-..+-.  ++. +.|
T Consensus       406 r~AA~naigQ~stdl~---p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd--~lm~~~l  480 (1075)
T KOG2171|consen  406 RYAALNAIGQMSTDLQ---PEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLD--GLMEKKL  480 (1075)
T ss_pred             HHHHHHHHHhhhhhhc---HHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH--HHHHHHH
Confidence            9999999999998733   22222333344567888885566789999999999988843  222222221  122 245


Q ss_pred             HHHhhcCCchhHHHHHHHHHhhccc
Q 008257          537 VDAFQHADYRTRQIAERALKHIDKI  561 (572)
Q Consensus       537 v~ll~~~~~~~~~~Aa~aL~~L~~~  561 (572)
                      ..+++++.+.+|+-|..+|+..+-.
T Consensus       481 ~~L~~~~~~~v~e~vvtaIasvA~A  505 (1075)
T KOG2171|consen  481 LLLLQSSKPYVQEQAVTAIASVADA  505 (1075)
T ss_pred             HHHhcCCchhHHHHHHHHHHHHHHH
Confidence            5577889999999999999987653

>PTZ00429 beta-adaptin; Provisional

Probab=99.17  E-value=3e-07  Score=101.57  Aligned_cols=292  Identities=12%  Similarity=0.093  Sum_probs=186.4

Q ss_pred             cHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhHHHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcC
Q 008257           38 LQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAG  117 (572)
Q Consensus        38 i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G  117 (572)
                      +..|.+-+.+.++.+|..|.++|+.+-..     .+.+.-.+++.+.|.+.++.+|..|+-|+.++-..++  +.+.+.|
T Consensus       107 INtl~KDl~d~Np~IRaLALRtLs~Ir~~-----~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--elv~~~~  179 (746)
T PTZ00429        107 VNTFLQDTTNSSPVVRALAVRTMMCIRVS-----SVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--QLFYQQD  179 (746)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHcCCcH-----HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--ccccccc
Confidence            44555666677777777777766654331     2333334778888999999999999999999976444  3345788


Q ss_pred             ChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHH
Q 008257          118 ILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLV  197 (572)
Q Consensus       118 ~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~  197 (572)
                      .++.|.++|...     ++.+..+|..+|..+...+++.          .-...+.+..|+..|..-++-.|...+..|.
T Consensus       180 ~~~~L~~LL~D~-----dp~Vv~nAl~aL~eI~~~~~~~----------l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~  244 (746)
T PTZ00429        180 FKKDLVELLNDN-----NPVVASNAAAIVCEVNDYGSEK----------IESSNEWVNRLVYHLPECNEWGQLYILELLA  244 (746)
T ss_pred             hHHHHHHHhcCC-----CccHHHHHHHHHHHHHHhCchh----------hHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence            999999998753     4889999999999997643210          1123455667777776667777888888886


Q ss_pred             HccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCCh
Q 008257          198 GLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGIS  277 (572)
Q Consensus       198 ~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~  277 (572)
                      ...  +....+.      ...+..+...|++.++.|.-.|++++.++....+.+..+....  ..-++|+.+++++.   
T Consensus       245 ~y~--P~~~~e~------~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~--rl~~pLv~L~ss~~---  311 (746)
T PTZ00429        245 AQR--PSDKESA------ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTV--RVNTALLTLSRRDA---  311 (746)
T ss_pred             hcC--CCCcHHH------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHH--HHHHHHHHhhCCCc---
Confidence            543  2221122      2457778888999999999999999999986533333333322  12366777754433   


Q ss_pred             HHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHH
Q 008257          278 KEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCC  357 (572)
Q Consensus       278 ~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~  357 (572)
                      +++..++..|..+....+..   |..  -+..+.-...+           ..-++...+..|..++     ++++...+.
T Consensus       312 eiqyvaLr~I~~i~~~~P~l---f~~--~~~~Ff~~~~D-----------p~yIK~~KLeIL~~La-----ne~Nv~~IL  370 (746)
T PTZ00429        312 ETQYIVCKNIHALLVIFPNL---LRT--NLDSFYVRYSD-----------PPFVKLEKLRLLLKLV-----TPSVAPEIL  370 (746)
T ss_pred             cHHHHHHHHHHHHHHHCHHH---HHH--HHHhhhcccCC-----------cHHHHHHHHHHHHHHc-----CcccHHHHH
Confidence            78887877665554433322   111  02222222222           1235667788888887     344433332


Q ss_pred             HcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhh
Q 008257          358 EHNLAALFIELLQSNGLDKVQMVSATALENLSLE  391 (572)
Q Consensus       358 ~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~  391 (572)
                           .-|.+..... +.+.++.+..+++.++..
T Consensus       371 -----~EL~eYa~d~-D~ef~r~aIrAIg~lA~k  398 (746)
T PTZ00429        371 -----KELAEYASGV-DMVFVVEVVRAIASLAIK  398 (746)
T ss_pred             -----HHHHHHhhcC-CHHHHHHHHHHHHHHHHh
Confidence                 3344555555 778888999999888753

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.14  E-value=5.5e-08  Score=107.33  Aligned_cols=403  Identities=19%  Similarity=0.188  Sum_probs=240.9

Q ss_pred             CCCCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHH----HHccCCHHHHHHHHHHHHHhcc-CcchhHHHHhh-h
Q 008257            4 SKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLT----QILEGPQETKLSLAAFLGDLAL-NSDVKVLVART-V   77 (572)
Q Consensus         4 ~~s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~----~L~~~~~~~~~~aa~~L~~l~~-~~~~k~~i~~~-g   77 (572)
                      .+|+|+..++.|..+|..+...-.|.    ..+.++.+..    .+.+++..+|..|+.++...+. .+.++.....- .
T Consensus       127 ~~S~~~~~rE~al~il~s~~~~~~~~----~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~  202 (1075)
T KOG2171|consen  127 TKSPNPSLRESALLILSSLPETFGNT----LQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRD  202 (1075)
T ss_pred             hcCCCcchhHHHHHHHHhhhhhhccc----cchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            47999999999999999998733232    2344444444    4455555599999999999877 43444444332 2


Q ss_pred             H-HHHHHhc----ccCCHHHHHHHHHHHHHhhcCCCc--HHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHH
Q 008257           78 G-SCLINIM----KSGNMQAREAALKALNQISSCEPS--AKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVV  150 (572)
Q Consensus        78 ~-~~Lv~lL----~s~~~~~~~~A~~aL~~Ls~~~~~--~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla  150 (572)
                      . |.++..|    +.++.+.-..++.+|-.|+...+-  +..+  ...|..-.++-.+.   +....+|..|.+.|..++
T Consensus       203 llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l--~~ii~~~l~Ia~n~---~l~~~~R~~ALe~ivs~~  277 (1075)
T KOG2171|consen  203 LLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHL--SQIIQFSLEIAKNK---ELENSIRHLALEFLVSLS  277 (1075)
T ss_pred             HhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHH--HHHHHHHHHHhhcc---cccHHHHHHHHHHHHHHH
Confidence            2 6666555    456666678888888888865432  2222  12344444555443   234677888888888777


Q ss_pred             hcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCC
Q 008257          151 NSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQ  230 (572)
Q Consensus       151 ~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~  230 (572)
                      ...+...+..      .......++.++.++.....+                   ++.-.    .       +-++.++
T Consensus       278 e~Ap~~~k~~------~~~~~~lv~~~l~~mte~~~D-------------------~ew~~----~-------d~~ded~  321 (1075)
T KOG2171|consen  278 EYAPAMCKKL------ALLGHTLVPVLLAMMTEEEDD-------------------DEWSN----E-------DDLDEDD  321 (1075)
T ss_pred             HhhHHHhhhc------hhhhccHHHHHHHhcCCcccc-------------------hhhcc----c-------ccccccc
Confidence            6422100000      001111222222222211100                   00000    0       0001111


Q ss_pred             -HHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHH
Q 008257          231 -NDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGL  309 (572)
Q Consensus       231 -~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~  309 (572)
                       ..-...|..+|-.++.+.+.+.   +..  -.++.+-.+|.+++-  ..|.+|+.+|+.++.+..+....... .+++.
T Consensus       322 ~~~~~~~A~~~lDrlA~~L~g~~---v~p--~~~~~l~~~l~S~~w--~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~  393 (1075)
T KOG2171|consen  322 EETPYRAAEQALDRLALHLGGKQ---VLP--PLFEALEAMLQSTEW--KERHAALLALSVIAEGCSDVMIGNLP-KILPI  393 (1075)
T ss_pred             ccCcHHHHHHHHHHHHhcCChhh---ehH--HHHHHHHHHhcCCCH--HHHHHHHHHHHHHHcccHHHHHHHHH-HHHHH
Confidence             1235577788888887765442   222  256777788888884  89999999999998877665442211 23344


Q ss_pred             HHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhh
Q 008257          310 IFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLS  389 (572)
Q Consensus       310 Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls  389 (572)
                      .++.|++          +++-++-.|+.++..++..+  -|+.++... .-++|.|+..+.+..+++|+.+||.|+-|++
T Consensus       394 Vl~~l~D----------phprVr~AA~naigQ~stdl--~p~iqk~~~-e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~  460 (1075)
T KOG2171|consen  394 VLNGLND----------PHPRVRYAALNAIGQMSTDL--QPEIQKKHH-ERLPPALIALLDSTQNVRVQAHAAAALVNFS  460 (1075)
T ss_pred             HHhhcCC----------CCHHHHHHHHHHHHhhhhhh--cHHHHHHHH-HhccHHHHHHhcccCchHHHHHHHHHHHHHH
Confidence            4444444          35667888999999998653  466666544 4677899999999878999999999999998


Q ss_pred             hhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchH-HHHHhhcCCCHhHHHHHHHHHH
Q 008257          390 LESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVE-KLIALLDHTNEKVVEASLAALS  468 (572)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~-~Lv~lL~~~~~~v~~~A~~aL~  468 (572)
                      .......                          +-|            |  =.+... .|..|+.++.+.+++.++.||+
T Consensus       461 E~~~~~~--------------------------l~p------------Y--Ld~lm~~~l~~L~~~~~~~v~e~vvtaIa  500 (1075)
T KOG2171|consen  461 EECDKSI--------------------------LEP------------Y--LDGLMEKKLLLLLQSSKPYVQEQAVTAIA  500 (1075)
T ss_pred             HhCcHHH--------------------------HHH------------H--HHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence            6432110                          000            0  012233 3334557889999999999999


Q ss_pred             HhhhcCc-cchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 008257          469 TVIDDGV-DIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERIL  517 (572)
Q Consensus       469 ~l~~~~~-~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~  517 (572)
                      ..+.... .+......+     +|.|..+|+...+++.++-....++++.
T Consensus       501 svA~AA~~~F~pY~d~~-----Mp~L~~~L~n~~~~d~r~LrgktmEcis  545 (1075)
T KOG2171|consen  501 SVADAAQEKFIPYFDRL-----MPLLKNFLQNADDKDLRELRGKTMECLS  545 (1075)
T ss_pred             HHHHHHhhhhHhHHHHH-----HHHHHHHHhCCCchhhHHHHhhHHHHHH
Confidence            9986432 222223332     4678888864444777766666665554

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.13  E-value=6.6e-10  Score=95.19  Aligned_cols=116  Identities=20%  Similarity=0.346  Sum_probs=99.9

Q ss_pred             hhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHc
Q 008257          439 LLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILR  518 (572)
Q Consensus       439 l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~  518 (572)
                      +++.|++++|+++|.+++..++..++.+|.+++.+.+   .....+.+.|+++.++++| .++++.++..++++|.+++.
T Consensus         3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~---~~~~~~~~~~~i~~l~~~l-~~~~~~v~~~a~~~L~~l~~   78 (120)
T cd00020           3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNN---DNIQAVVEAGGLPALVQLL-KSEDEEVVKAALWALRNLAA   78 (120)
T ss_pred             HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCH---HHHHHHHHCCChHHHHHHH-hCCCHHHHHHHHHHHHHHcc
Confidence            4688999999999999999999999999999997643   4466788899999999999 58899999999999999997


Q ss_pred             ch-hhhhhhcCCCCchHHHHHHhhcCCchhHHHHHHHHHhhc
Q 008257          519 TD-DIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHID  559 (572)
Q Consensus       519 ~~-~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~  559 (572)
                      +. .....+...+.+ +.|++++.+++.++++.|.++|.+|.
T Consensus        79 ~~~~~~~~~~~~g~l-~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          79 GPEDNKLIVLEAGGV-PKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             CcHHHHHHHHHCCCh-HHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence            64 444555544444 59999999999999999999999985

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.08  E-value=3.8e-08  Score=101.07  Aligned_cols=323  Identities=11%  Similarity=0.092  Sum_probs=215.5

Q ss_pred             hhhHHHHHHHHhc-CChhHHHHHHHHHHHccCCCCccHHHHHHHHhc-----CChHHHHHHhcCCCHHHHHHHHHHHHHc
Q 008257          171 EDIVHNLLHLISN-TGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSS-----GATISLVQFVEAPQNDLRLASIELIQNL  244 (572)
Q Consensus       171 ~~~i~~Lv~lL~~-~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~-----g~i~~Lv~lL~~~~~~v~~~a~~~L~~L  244 (572)
                      +..+..++++++. +.+++.+..+..+..+.....   .....+.+.     ....+++.+|..++.-++..|+..|..+
T Consensus        52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~---~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l  128 (429)
T cd00256          52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDD---TRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKL  128 (429)
T ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhch---HHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHH
Confidence            3567778888864 556777777777777665532   122334443     4567888899988888999999999998


Q ss_pred             CCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCC
Q 008257          245 SPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRG  324 (572)
Q Consensus       245 s~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~  324 (572)
                      ..............  -.+..|...|.++++ ...+..|+.++..|.. .++.+..+++.+++++|+.+|+...      
T Consensus       129 ~~~~~~~~~~~~l~--~~~~~l~~~l~~~~~-~~~~~~~v~~L~~LL~-~~~~R~~f~~~~~v~~L~~~L~~~~------  198 (429)
T cd00256         129 ACFGLAKMEGSDLD--YYFNWLKEQLNNITN-NDYVQTAARCLQMLLR-VDEYRFAFVLADGVPTLVKLLSNAT------  198 (429)
T ss_pred             HhcCccccchhHHH--HHHHHHHHHhhccCC-cchHHHHHHHHHHHhC-CchHHHHHHHccCHHHHHHHHhhcc------
Confidence            75422211111111  133456667766543 3667777888888877 6688889999999999999998521      


Q ss_pred             CcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCC---
Q 008257          325 SRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPEL---  401 (572)
Q Consensus       325 ~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~---  401 (572)
                        ...+++-.++-.++-++.    +++......+.+.||.|+++++....+++-+.+..+|.|+.....+.......   
T Consensus       199 --~~~Ql~Y~~ll~lWlLSF----~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~  272 (429)
T cd00256         199 --LGFQLQYQSIFCIWLLTF----NPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQ  272 (429)
T ss_pred             --ccHHHHHHHHHHHHHHhc----cHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHH
Confidence              234667778888888884    56667777889999999999998757888899999999998754322110000   


Q ss_pred             -CCCCCCcccccccc----CCCc--------------------------------cccccccccC--ccCccchhhhh--
Q 008257          402 -PPSGFCASIFPCFS----KQPV--------------------------------ITGLCRLHRG--LCSLKETFCLL--  440 (572)
Q Consensus       402 -~~~~~~~~~~~~~~----~~~~--------------------------------~~~~c~~~~~--~~~~~~~~~l~--  440 (572)
                       ...+ ...++..+.    .+++                                ...=.|+|..  .| .+|...+-  
T Consensus       273 mv~~~-l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW-~EN~~kf~~~  350 (429)
T cd00256         273 MVQCK-VLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFW-RENADRLNEK  350 (429)
T ss_pred             HHHcC-hHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHH-HHHHHHHHhc
Confidence             0000 000011111    0000                                0122366742  22 12221222  


Q ss_pred             hccchHHHHHhhc-CCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHc
Q 008257          441 EGHAVEKLIALLD-HTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILR  518 (572)
Q Consensus       441 ~~g~i~~Lv~lL~-~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~  518 (572)
                      +-..+..|+++|+ +.++.+...|+.=++.++.+.+   .+...+.+.||=..+++++ +|+|++++..|..+++++.-
T Consensus       351 ~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P---~gr~i~~~lg~K~~vM~Lm-~h~d~~Vr~eAL~avQklm~  425 (429)
T cd00256         351 NYELLKILIHLLETSVDPIILAVACHDIGEYVRHYP---RGKDVVEQLGGKQRVMRLL-NHEDPNVRYEALLAVQKLMV  425 (429)
T ss_pred             chHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCc---cHHHHHHHcCcHHHHHHHh-cCCCHHHHHHHHHHHHHHHH
Confidence            1225678999994 6788899999999999998754   6778888999988999999 69999999999999999863

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.07  E-value=7.1e-08  Score=101.92  Aligned_cols=305  Identities=13%  Similarity=0.139  Sum_probs=222.1

Q ss_pred             hHHHHHHhcccCC-HHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCC
Q 008257           77 VGSCLINIMKSGN-MQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHD  155 (572)
Q Consensus        77 g~~~Lv~lL~s~~-~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~  155 (572)
                      -++.|++-+.+.. .+-|+.|++.|..++..   .+..|-+-|++||++.|....   .++++-..+..++.++..++.+
T Consensus        23 TI~kLcDRvessTL~eDRR~A~rgLKa~srk---YR~~Vga~Gmk~li~vL~~D~---~D~E~ik~~LdTl~il~~~dd~   96 (970)
T KOG0946|consen   23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSRK---YREEVGAQGMKPLIQVLQRDY---MDPEIIKYALDTLLILTSHDDS   96 (970)
T ss_pred             HHHHHHHHHhhccchhhHHHHHHHHHHHHHH---HHHHHHHcccHHHHHHHhhcc---CCHHHHHHHHHHHHHHHhcCcc
Confidence            3488888887655 57799999999998852   245577889999999998654   3478888999999999987742


Q ss_pred             CCc----cccCCCc-----cccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHh-cCChHHHHHH
Q 008257          156 FDS----ITVGPDN-----QTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKS-SGATISLVQF  225 (572)
Q Consensus       156 ~~~----~~~~~~~-----~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~-~g~i~~Lv~l  225 (572)
                      ...    .-.++-|     ..+...+.|..|+..+..-+-.++..++..|.++-+...  .+++.++.. .-||..|+.+
T Consensus        97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~--~e~q~~ll~~P~gIS~lmdl  174 (970)
T KOG0946|consen   97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRP--TELQDALLVSPMGISKLMDL  174 (970)
T ss_pred             hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCC--HHHHHHHHHCchhHHHHHHH
Confidence            210    0111112     345678899999999999999999999999998866543  367777554 5699999999


Q ss_pred             hcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCC--ChHHHHHHHHHHhcCCCCcHHHHHHHHh
Q 008257          226 VEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVG--ISKEQAAAVGLLAELPERDLGLTRQMLD  303 (572)
Q Consensus       226 L~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~--~~~~~~~A~~~L~~L~~~~~~~~~~l~~  303 (572)
                      |.+....+|-.++-+|..|.++. ..+++.+.-. ++...|..+++....  -.-+-..++..|-||-+.+..+++.|.+
T Consensus       175 L~DsrE~IRNe~iLlL~eL~k~n-~~IQKlVAFE-NaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE  252 (970)
T KOG0946|consen  175 LRDSREPIRNEAILLLSELVKDN-SSIQKLVAFE-NAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFRE  252 (970)
T ss_pred             HhhhhhhhchhHHHHHHHHHccC-chHHHHHHHH-HHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhc
Confidence            99988889999999999999884 4565544433 789999999976542  1136678889999999988888889999


Q ss_pred             CCChHHHHHHHhhhccCC----CCCCcchhhHHHHHHHHHHHHhccCCCCh-----HHHHHHHHcCchHHHHHHhccCC-
Q 008257          304 EGAFGLIFSRVKSIQLGE----TRGSRFVTPFLEGLLSVLARVTFVLSDEP-----DAIALCCEHNLAALFIELLQSNG-  373 (572)
Q Consensus       304 ~g~l~~Lv~lL~~~~~~~----~~~~~~~~~~~e~a~~aL~~l~~~~~~~~-----~~~~~i~~~g~i~~Lv~lL~~~~-  373 (572)
                      .+.||.|..+|.....+.    .+......-+. .++.++.-+..+  +|+     .+++.+...+++..|+.++-+++ 
T Consensus       253 ~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~-~~Lqivr~lVsP--~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~v  329 (970)
T KOG0946|consen  253 GSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVI-EALQIVRSLVSP--GNTSSITHQNQKALVSSHLLDVLCTILMHPGV  329 (970)
T ss_pred             cccHHHHHhhcCcccccCcccccccHHHHHHHH-HHHHHHHHhcCC--CCcHHHHHHHHHHHHHcchHHHHHHHHcCCCC
Confidence            999999999998644332    11111111111 133344444433  333     36678899999999999998873 


Q ss_pred             cHHHHHHHHHHHHHhhhhccc
Q 008257          374 LDKVQMVSATALENLSLESKN  394 (572)
Q Consensus       374 ~~~vk~~Aa~aL~~ls~~~~~  394 (572)
                      ..+++..+..+++++.++...
T Consensus       330 p~dIltesiitvAevVRgn~~  350 (970)
T KOG0946|consen  330 PADILTESIITVAEVVRGNAR  350 (970)
T ss_pred             cHhHHHHHHHHHHHHHHhchH
Confidence            567888888888888765543

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.97  E-value=2.4e-07  Score=98.78  Aligned_cols=259  Identities=12%  Similarity=0.125  Sum_probs=193.1

Q ss_pred             cHHHHHHHcc-CCHHHHHHHHHHHHHhc-c-CcchhHHH-HhhhHHHHHHhcccC-CHHHHHHHHHHHHHhhc-CCCcHH
Q 008257           38 LQPLLTQILE-GPQETKLSLAAFLGDLA-L-NSDVKVLV-ARTVGSCLINIMKSG-NMQAREAALKALNQISS-CEPSAK  111 (572)
Q Consensus        38 i~~Lv~~L~~-~~~~~~~~aa~~L~~l~-~-~~~~k~~i-~~~g~~~Lv~lL~s~-~~~~~~~A~~aL~~Ls~-~~~~~~  111 (572)
                      +..|+.=|+. +++..|.+|+.-|+.+- . +++.-..+ .+.-+|.||.+|+.+ +.+.+..|++||.+|+. .++...
T Consensus       169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a  248 (1051)
T KOG0168|consen  169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA  248 (1051)
T ss_pred             HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence            3444444443 35666777777777643 3 33332222 244459999999974 57999999999999996 577788


Q ss_pred             HHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHH
Q 008257          112 VLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECK  191 (572)
Q Consensus       112 ~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~  191 (572)
                      .+|+.|+||.|++-|..    -..+++-|++..+|..|++..           +..+...|.+...+..|.-=+..+|..
T Consensus       249 ~vV~~~aIPvl~~kL~~----IeyiDvAEQ~LqALE~iSR~H-----------~~AiL~AG~l~a~LsylDFFSi~aQR~  313 (1051)
T KOG0168|consen  249 IVVDEHAIPVLLEKLLT----IEYIDVAEQSLQALEKISRRH-----------PKAILQAGALSAVLSYLDFFSIHAQRV  313 (1051)
T ss_pred             eeecccchHHHHHhhhh----hhhhHHHHHHHHHHHHHHhhc-----------cHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            88999999999987754    245899999999999998743           235667888888888887777889999


Q ss_pred             HHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCC--CChhHHHHHhcccCChhhHHhh
Q 008257          192 LLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPH--MGHELADALRGAVGQLGSLIRV  269 (572)
Q Consensus       192 a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~--~~~~~~~~i~~~~g~l~~Lv~l  269 (572)
                      |+.+-.|+|+.-.. ++....   ..++|.|-.+|...|....+.++-.+..++..  .+.+.-+.+... |.|....+|
T Consensus       314 AlaiaaN~Cksi~s-d~f~~v---~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~-dLi~~~~qL  388 (1051)
T KOG0168|consen  314 ALAIAANCCKSIRS-DEFHFV---MEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSH-DLITNIQQL  388 (1051)
T ss_pred             HHHHHHHHHhcCCC-ccchHH---HHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhch-hHHHHHHHH
Confidence            99999999986332 233332   34899999999999988899998888888743  233334567766 888888888


Q ss_pred             hccCCC--ChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhh
Q 008257          270 ISENVG--ISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKS  316 (572)
Q Consensus       270 L~~~~~--~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~  316 (572)
                      |.-...  ........++.++.++.+.+-..+.+.+.|+...|..+|..
T Consensus       389 lsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g  437 (1051)
T KOG0168|consen  389 LSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQG  437 (1051)
T ss_pred             HhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhc
Confidence            865432  12556677888999998878888899999999999999986

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=98.97  E-value=3.2e-07  Score=95.72  Aligned_cols=454  Identities=14%  Similarity=0.083  Sum_probs=255.8

Q ss_pred             HHHccCCHHHHHHHHHHHHHhcc-CcchhHHHHhhhH-HHHHHhcccC--CHHHHHHHHHHHHHhhcCC-CcHHHHHHcC
Q 008257           43 TQILEGPQETKLSLAAFLGDLAL-NSDVKVLVARTVG-SCLINIMKSG--NMQAREAALKALNQISSCE-PSAKVLIHAG  117 (572)
Q Consensus        43 ~~L~~~~~~~~~~aa~~L~~l~~-~~~~k~~i~~~g~-~~Lv~lL~s~--~~~~~~~A~~aL~~Ls~~~-~~~~~iv~~G  117 (572)
                      ..|...+++....+..-..+++. ++++|..+.+.|. |.|..+++.+  .++.+...+.++..+...+ .....+.+.+
T Consensus        16 ~~L~~~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~   95 (678)
T KOG1293|consen   16 YRLLHLDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRII   95 (678)
T ss_pred             HhhhcCCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHh
Confidence            34445555555666666677665 6777777888888 8888888764  4567756666666666544 4578888999


Q ss_pred             ChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHH
Q 008257          118 ILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLV  197 (572)
Q Consensus       118 ~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~  197 (572)
                      .+|.|.++|+.++    +..+++.....+.++-...+..+.. .     .......++.+..++..+...+...-+.-..
T Consensus        96 ~ll~Ll~LLs~sD----~~~~le~~l~~lR~Ifet~~~q~~~-~-----s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a  165 (678)
T KOG1293|consen   96 ELLKLLQLLSESD----SLNVLEKTLRCLRTIFETSKYQDKK-M-----SLHLKSIIVKFSLLYSIELKYISRLDVSRAA  165 (678)
T ss_pred             hHHHHHHHhcCcc----hHhHHHHHHHHHHHHHhcccccccc-h-----hhhHHHHHHHHHHHHhhhhhhhhhhhhhhhc
Confidence            9999999998752    4678999999999998765433321 1     1233445555555544122222222222222


Q ss_pred             HccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHH---HcCCCCChhHH---HHHhcccCChh--hHHhh
Q 008257          198 GLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQ---NLSPHMGHELA---DALRGAVGQLG--SLIRV  269 (572)
Q Consensus       198 ~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~---~Ls~~~~~~~~---~~i~~~~g~l~--~Lv~l  269 (572)
                      .++...    .-+..+..+|....+.-++...+..+|..|...++   .+...++....   ..+... |..+  ...++
T Consensus       166 ~~s~~~----~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~-~v~~r~~v~rL  240 (678)
T KOG1293|consen  166 HLSSTK----DHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDK-GVNIRCVVTRL  240 (678)
T ss_pred             cccccc----hhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhcc-ccchhhhhhhh
Confidence            333333    33555667777777777777777888999888888   55444322211   122332 4443  46666


Q ss_pred             hccCCCChHHHHHHHHHHhcCCCCc----HHHH-HHHHhCCC-hHHHHHHHhh-hccCCCCCCcchhhHHHHHHHHHHHH
Q 008257          270 ISENVGISKEQAAAVGLLAELPERD----LGLT-RQMLDEGA-FGLIFSRVKS-IQLGETRGSRFVTPFLEGLLSVLARV  342 (572)
Q Consensus       270 L~~~~~~~~~~~~A~~~L~~L~~~~----~~~~-~~l~~~g~-l~~Lv~lL~~-~~~~~~~~~~~~~~~~e~a~~aL~~l  342 (572)
                      +.++..  ..+..+...+.++...+    +-.. ..+.+.|- .-.....+.- ..++-     ....+.-.....+.++
T Consensus       241 ~k~~~~--s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~-----s~l~~~~~l~c~~a~~  313 (678)
T KOG1293|consen  241 LKDPDF--SERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGL-----STLDHTNVLFCILARF  313 (678)
T ss_pred             hhCCCc--cHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCce-----eehhhhhhhHHHHHHH
Confidence            677665  44444444444332211    1110 01112110 0001111110 00110     0111111122222223


Q ss_pred             hccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCcccc
Q 008257          343 TFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITG  422 (572)
Q Consensus       343 ~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (572)
                      .      ..++....+...+|.+++++... .+ .   ++....++.-.-..                           .
T Consensus       314 ~------sklq~~~~e~~~~~~~~ellf~~-~s-l---~a~~~~~~~i~l~e---------------------------~  355 (678)
T KOG1293|consen  314 A------SKLQLPQHEEATLKTTTELLFIC-AS-L---AASDEKYRLILLNE---------------------------T  355 (678)
T ss_pred             H------HhhhhHHhhhhhhhhHHHHHHHH-HH-H---hhcchhhhHHHhhh---------------------------h
Confidence            2      34455567788889999999875 21 1   11111111000000                           0


Q ss_pred             ccccccCccC-ccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcC
Q 008257          423 LCRLHRGLCS-LKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKR  501 (572)
Q Consensus       423 ~c~~~~~~~~-~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~  501 (572)
                      ..+-|.+.|. .....++.+.-.-..+..+....+.....+|+-.+-+++..-....   .......++.+|++++ ..|
T Consensus       356 ~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~---tg~~~~dv~~plvqll-~dp  431 (678)
T KOG1293|consen  356 LILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALR---TGLKRNDVAQPLVQLL-MDP  431 (678)
T ss_pred             hhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHH---cCCccchhHHHHHHHh-hCc
Confidence            0011111111 1122223333333344444456777888888777776654211111   1245667889999999 688


Q ss_pred             CHHHHHHHHHHHHHHH-cchhhhhhhcCCCCchHHHHHHhhcCCchhHHHHHHHHHhhccc
Q 008257          502 TENLQRRAVWVVERIL-RTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHIDKI  561 (572)
Q Consensus       502 ~~~~~~~a~~~l~~l~-~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~  561 (572)
                      +-.++..+..+|.|+. .-...+..|...+++. .|..++.+.++.+|..+-|+|.|+.-.
T Consensus       432 ~~~i~~~~lgai~NlVmefs~~kskfl~~ngId-~l~s~~~~~~~n~r~~~~~~Lr~l~f~  491 (678)
T KOG1293|consen  432 EIMIMGITLGAICNLVMEFSNLKSKFLRNNGID-ILESMLTDPDFNSRANSLWVLRHLMFN  491 (678)
T ss_pred             chhHHHHHHHHHHHHHhhcccHHHHHHHcCcHH-HHHHHhcCCCchHHHHHHHHHHHHHhc
Confidence            8899999999999998 4477888888888885 999999999999999999999998654

>PTZ00429 beta-adaptin; Provisional

Probab=98.93  E-value=7.9e-06  Score=90.49  Aligned_cols=454  Identities=13%  Similarity=0.126  Sum_probs=274.2

Q ss_pred             HHHHhhccCcchHHHHH--HcCCcHHHHHHHccCCHHHHHHHHHH-HHHhccCcchhHHHHhhhHHHHHHhcccCCHHHH
Q 008257           17 KTLANLEKCENNVRQMA--ENGRLQPLLTQILEGPQETKLSLAAF-LGDLALNSDVKVLVARTVGSCLINIMKSGNMQAR   93 (572)
Q Consensus        17 ~~L~~L~~~~~n~~~i~--~~g~i~~Lv~~L~~~~~~~~~~aa~~-L~~l~~~~~~k~~i~~~g~~~Lv~lL~s~~~~~~   93 (572)
                      ++-+++.+.....+.+.  ..|=+.-|-+.|.+.+...|.++..- +..+....+...     +.+..++++.+.+.+.+
T Consensus        11 ~~~~~~~~~~~~~~~f~~~~kge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~DvS~-----LF~dVvk~~~S~d~elK   85 (746)
T PTZ00429         11 RIQRKLEETKTGSKYFAQTRRGEGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDVSY-----LFVDVVKLAPSTDLELK   85 (746)
T ss_pred             HHHHHhhcCCCccccccccccchHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCchH-----HHHHHHHHhCCCCHHHH
Confidence            45556655444444443  34556777788888887777777754 444555433211     23888899999999999


Q ss_pred             HHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhh
Q 008257           94 EAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDI  173 (572)
Q Consensus        94 ~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~  173 (572)
                      +-..-.|.+.+...+.-..+    +|..|.+=+.++     ++.+|..|..+++++-..               -..+-.
T Consensus        86 KLvYLYL~~ya~~~pelalL----aINtl~KDl~d~-----Np~IRaLALRtLs~Ir~~---------------~i~e~l  141 (746)
T PTZ00429         86 KLVYLYVLSTARLQPEKALL----AVNTFLQDTTNS-----SPVVRALAVRTMMCIRVS---------------SVLEYT  141 (746)
T ss_pred             HHHHHHHHHHcccChHHHHH----HHHHHHHHcCCC-----CHHHHHHHHHHHHcCCcH---------------HHHHHH
Confidence            99999999988754433223    456666666543     488999999988887321               012346


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHH
Q 008257          174 VHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELA  253 (572)
Q Consensus       174 i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~  253 (572)
                      ++.+.+.+.+.+|.|+..|+-++..+-....      ..+.+.|-++.|.++|...++.|+.+|+.+|..+....+..+ 
T Consensus       142 ~~~lkk~L~D~~pYVRKtAalai~Kly~~~p------elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l-  214 (746)
T PTZ00429        142 LEPLRRAVADPDPYVRKTAAMGLGKLFHDDM------QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI-  214 (746)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc------ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh-
Confidence            7777888888999999999999998865432      123356788899999999999999999999999975543322 


Q ss_pred             HHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHH
Q 008257          254 DALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLE  333 (572)
Q Consensus       254 ~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e  333 (572)
                      +...   +.+..|+..|..-++  -.|...+.+|....-.+..-.     ...+..+...|++          .+..+.=
T Consensus       215 ~l~~---~~~~~Ll~~L~e~~E--W~Qi~IL~lL~~y~P~~~~e~-----~~il~~l~~~Lq~----------~N~AVVl  274 (746)
T PTZ00429        215 ESSN---EWVNRLVYHLPECNE--WGQLYILELLAAQRPSDKESA-----ETLLTRVLPRMSH----------QNPAVVM  274 (746)
T ss_pred             HHHH---HHHHHHHHHhhcCCh--HHHHHHHHHHHhcCCCCcHHH-----HHHHHHHHHHhcC----------CCHHHHH
Confidence            1222   356667777765554  345555666654322121111     1344555566654          2455666


Q ss_pred             HHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCcccccc
Q 008257          334 GLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPC  413 (572)
Q Consensus       334 ~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~  413 (572)
                      .++.++.+++..  .+++..+.+.. .+-++|+.|+. + ++++|..+...|..+....+..-..      .  ...|.|
T Consensus       275 ~Aik~il~l~~~--~~~~~~~~~~~-rl~~pLv~L~s-s-~~eiqyvaLr~I~~i~~~~P~lf~~------~--~~~Ff~  341 (746)
T PTZ00429        275 GAIKVVANLASR--CSQELIERCTV-RVNTALLTLSR-R-DAETQYIVCKNIHALLVIFPNLLRT------N--LDSFYV  341 (746)
T ss_pred             HHHHHHHHhcCc--CCHHHHHHHHH-HHHHHHHHhhC-C-CccHHHHHHHHHHHHHHHCHHHHHH------H--HHhhhc
Confidence            788888888743  23444333221 22377787754 4 6789988888887666544332110      0  123444


Q ss_pred             ccCCCcc--ccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChH
Q 008257          414 FSKQPVI--TGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIK  491 (572)
Q Consensus       414 ~~~~~~~--~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~  491 (572)
                      ...++..  ..--.+....|+..|.-.     .+.-|.+...+.+.+.+..++++++.++.--+   ....     ..+.
T Consensus       342 ~~~Dp~yIK~~KLeIL~~Lane~Nv~~-----IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~---~~a~-----~cV~  408 (746)
T PTZ00429        342 RYSDPPFVKLEKLRLLLKLVTPSVAPE-----ILKELAEYASGVDMVFVVEVVRAIASLAIKVD---SVAP-----DCAN  408 (746)
T ss_pred             ccCCcHHHHHHHHHHHHHHcCcccHHH-----HHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCh---HHHH-----HHHH
Confidence            4333320  000000000111122211     34556666677888999999999999995322   2122     3467


Q ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHcc-hhhhhhhcCCCCchHHHHHHh---hcCCchhHHHHHHHHHhhcccC
Q 008257          492 PILDVLLEKRTENLQRRAVWVVERILRT-DDIAYEVSGDPNVSTALVDAF---QHADYRTRQIAERALKHIDKIP  562 (572)
Q Consensus       492 ~L~~lL~~~~~~~~~~~a~~~l~~l~~~-~~~~~~~~~~~~~~~~Lv~ll---~~~~~~~~~~Aa~aL~~L~~~~  562 (572)
                      .|++++. .+.+ ....++.++..+++. ++   .+     +...|++.+   .-.+++++....|+|...+..-
T Consensus       409 ~Ll~ll~-~~~~-~v~e~i~vik~IlrkyP~---~~-----il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I  473 (746)
T PTZ00429        409 LLLQIVD-RRPE-LLPQVVTAAKDIVRKYPE---LL-----MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFI  473 (746)
T ss_pred             HHHHHhc-CCch-hHHHHHHHHHHHHHHCcc---HH-----HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhH
Confidence            8889994 5544 445677788887643 22   11     112455433   2245677777788888776543

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.85  E-value=1.2e-07  Score=93.07  Aligned_cols=187  Identities=21%  Similarity=0.199  Sum_probs=144.6

Q ss_pred             cCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCcc
Q 008257           87 SGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQ  166 (572)
Q Consensus        87 s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~  166 (572)
                      +.+++-++.|+.-|..+..+-+|...++..||.++++.+|.+.     +..+|+.|+++|+..++++             
T Consensus        94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~-----~~~lR~~Aa~Vigt~~qNN-------------  155 (342)
T KOG2160|consen   94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENS-----DAELRELAARVIGTAVQNN-------------  155 (342)
T ss_pred             cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCC-----cHHHHHHHHHHHHHHHhcC-------------
Confidence            4677889999999999999999999999999999999988764     3899999999999998753             


Q ss_pred             ccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCC-HHHHHHHHHHHHHcC
Q 008257          167 TLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQ-NDLRLASIELIQNLS  245 (572)
Q Consensus       167 ~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~a~~~L~~Ls  245 (572)
                                         |                     .++..+.+.||++.|+..|.+++ ..+|..|+.+++.|-
T Consensus       156 -------------------P---------------------~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLI  195 (342)
T KOG2160|consen  156 -------------------P---------------------KSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLI  195 (342)
T ss_pred             -------------------H---------------------HHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHH
Confidence                               2                     34566778999999999998766 478899999999999


Q ss_pred             CCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCC
Q 008257          246 PHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGS  325 (572)
Q Consensus       246 ~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~  325 (572)
                      ++...... .+... ++...|...|.+++.....+..++..+..+...+......+...|.-..+..+...         
T Consensus       196 Rn~~~g~~-~fl~~-~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~---------  264 (342)
T KOG2160|consen  196 RNNKPGQD-EFLKL-NGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLENLISS---------  264 (342)
T ss_pred             hcCcHHHH-HHHhc-CCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhc---------
Confidence            88655554 44444 67999999999875434788889999999987666665544555555555555544         


Q ss_pred             cchhhHHHHHHHHHHHHh
Q 008257          326 RFVTPFLEGLLSVLARVT  343 (572)
Q Consensus       326 ~~~~~~~e~a~~aL~~l~  343 (572)
                       ...++.|.++.++..+.
T Consensus       265 -l~~~~~e~~l~~~l~~l  281 (342)
T KOG2160|consen  265 -LDFEVNEAALTALLSLL  281 (342)
T ss_pred             -cchhhhHHHHHHHHHHH
Confidence             23455677777666544

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.81  E-value=2e-07  Score=91.49  Aligned_cols=186  Identities=21%  Similarity=0.191  Sum_probs=154.0

Q ss_pred             CCCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhcc-CcchhHHHHhhhH-HHHH
Q 008257            5 KSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLAL-NSDVKVLVARTVG-SCLI   82 (572)
Q Consensus         5 ~s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~-~~~~k~~i~~~g~-~~Lv   82 (572)
                      .|-|++-.+.|..-|..+.++-+|-..+...|+..+++.+|.+++.++|..||+.++..+. ++.....+.+.|+ +.|+
T Consensus        93 ~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll  172 (342)
T KOG2160|consen   93 SSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL  172 (342)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence            4667788899999999999988899999999999999999999999999999999999998 5567788888888 9999


Q ss_pred             HhcccCCH-HHHHHHHHHHHHhhcCCC-cHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccc
Q 008257           83 NIMKSGNM-QAREAALKALNQISSCEP-SAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSIT  160 (572)
Q Consensus        83 ~lL~s~~~-~~~~~A~~aL~~Ls~~~~-~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~  160 (572)
                      ..|.++++ .++..|+.|+..|-.+.+ ........+|...|..+|.+++   .+..+|..++..+.++.....+...  
T Consensus       173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~---~~~~lkrK~~~Ll~~Ll~~~~s~~d--  247 (342)
T KOG2160|consen  173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNN---TSVKLKRKALFLLSLLLQEDKSDED--  247 (342)
T ss_pred             HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCC---cchHHHHHHHHHHHHHHHhhhhhhh--
Confidence            99997554 678999999999998654 4667778999999999999853   3488999999999999875443221  


Q ss_pred             cCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccC
Q 008257          161 VGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTS  201 (572)
Q Consensus       161 ~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~  201 (572)
                            .+...++...++.+..+.+.++++.++.++..+..
T Consensus       248 ------~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~  282 (342)
T KOG2160|consen  248 ------IASSLGFQRVLENLISSLDFEVNEAALTALLSLLS  282 (342)
T ss_pred             ------HHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence                  34456667777778788888999988887766543

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.77  E-value=1.6e-05  Score=79.30  Aligned_cols=349  Identities=14%  Similarity=0.126  Sum_probs=220.1

Q ss_pred             HHHHHhccc-CCHHHHHHHHHHHHHhhcCCCcHHHHHH-------cCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHH
Q 008257           79 SCLINIMKS-GNMQAREAALKALNQISSCEPSAKVLIH-------AGILPPLVKDLFTVGSNHLPMRLKEVSATILANVV  150 (572)
Q Consensus        79 ~~Lv~lL~s-~~~~~~~~A~~aL~~Ls~~~~~~~~iv~-------~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla  150 (572)
                      .+++.+|+. ..++.....+..+..+-+.+..+..+.+       .-.-++.+++|...     +.-+.+.++++++.++
T Consensus        68 ~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~-----d~~iv~~~~~Ils~la  142 (442)
T KOG2759|consen   68 KTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQ-----DTFIVEMSFRILSKLA  142 (442)
T ss_pred             HHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcC-----ChHHHHHHHHHHHHHH
Confidence            788888886 4456677888888888777776655542       23356778888754     2667777999999998


Q ss_pred             hcCCCCCccccCCCccccchhh-hHHHHHHHHhc-CChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcC
Q 008257          151 NSGHDFDSITVGPDNQTLVSED-IVHNLLHLISN-TGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEA  228 (572)
Q Consensus       151 ~~~~~~~~~~~~~~~~~l~~~~-~i~~Lv~lL~~-~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~  228 (572)
                      ..+...-     .    ..... ....|-..+++ ..++...-++++|..+...+.    .|..+....|+..|+..+.+
T Consensus       143 ~~g~~~~-----~----~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~e----yR~~~v~adg~~~l~~~l~s  209 (442)
T KOG2759|consen  143 CFGNCKM-----E----LSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDE----YRYAFVIADGVSLLIRILAS  209 (442)
T ss_pred             Hhccccc-----c----chHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcc----hhheeeecCcchhhHHHHhc
Confidence            7653211     0    00111 12223334444 566777788999999988864    58888899999999999943


Q ss_pred             C--CHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcH------HHHHH
Q 008257          229 P--QNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDL------GLTRQ  300 (572)
Q Consensus       229 ~--~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~------~~~~~  300 (572)
                      .  +-.+|=..+.+++.|+-.  +.+++.+... +.|+.|.++++.... +++-...++++.|+....+      .....
T Consensus       210 ~~~~~QlQYqsifciWlLtFn--~~~ae~~~~~-~li~~L~~Ivk~~~K-EKV~Rivlai~~Nll~k~~~~~~~k~~~~~  285 (442)
T KOG2759|consen  210 TKCGFQLQYQSIFCIWLLTFN--PHAAEKLKRF-DLIQDLSDIVKESTK-EKVTRIVLAIFRNLLDKGPDRETKKDIASQ  285 (442)
T ss_pred             cCcchhHHHHHHHHHHHhhcC--HHHHHHHhhc-cHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccCchhhHHHHHHHH
Confidence            3  246777888889988855  2344566544 789999999988763 5777778888999876542      33345


Q ss_pred             HHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHH
Q 008257          301 MLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMV  380 (572)
Q Consensus       301 l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~  380 (572)
                      ++.+++.+.+-.+ ...+.       .++.+.+.    +-.+..      ...+.          ++-|.+- + +=+.+
T Consensus       286 mv~~~v~k~l~~L-~~rky-------sDEDL~~d----i~~L~e------~L~~s----------vq~LsSF-D-eY~sE  335 (442)
T KOG2759|consen  286 MVLCKVLKTLQSL-EERKY-------SDEDLVDD----IEFLTE------KLKNS----------VQDLSSF-D-EYKSE  335 (442)
T ss_pred             HHhcCchHHHHHH-HhcCC-------CcHHHHHH----HHHHHH------HHHHH----------HHhhccH-H-HHHHH
Confidence            6665555554444 33211       12222221    112211      00111          1112221 1 00000


Q ss_pred             HHHHHHHhhhhccccCCCCCCCCCCCCccccc----cccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCC-
Q 008257          381 SATALENLSLESKNLTKLPELPPSGFCASIFP----CFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHT-  455 (572)
Q Consensus       381 Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~-  455 (572)
                         .          .+....+.|++-...+|.    +|                  .++.+.     .+..|+++|+.+ 
T Consensus       336 ---l----------~sG~L~WSP~Hk~e~FW~eNa~rl------------------nennye-----llkiL~~lLe~s~  379 (442)
T KOG2759|consen  336 ---L----------RSGRLEWSPVHKSEKFWRENADRL------------------NENNYE-----LLKILIKLLETSN  379 (442)
T ss_pred             ---H----------HhCCcCCCccccccchHHHhHHHH------------------hhccHH-----HHHHHHHHHhcCC
Confidence               0          001111112221111111    22                  134443     567899999765 


Q ss_pred             CHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcc
Q 008257          456 NEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRT  519 (572)
Q Consensus       456 ~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~  519 (572)
                      +|.+...|+.=++.++.+.+   ++...+.+.||=..+.+++ +|+|++++-.|.-+++++..+
T Consensus       380 Dp~iL~VAc~DIge~Vr~yP---~gk~vv~k~ggKe~vM~Ll-nh~d~~Vry~ALlavQ~lm~~  439 (442)
T KOG2759|consen  380 DPIILCVACHDIGEYVRHYP---EGKAVVEKYGGKERVMNLL-NHEDPEVRYHALLAVQKLMVH  439 (442)
T ss_pred             CCceeehhhhhHHHHHHhCc---hHhHHHHHhchHHHHHHHh-cCCCchHHHHHHHHHHHHHhh
Confidence            48889999999999998755   7888999999999999999 699999999999999988743

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=98.75  E-value=7.9e-06  Score=84.22  Aligned_cols=313  Identities=12%  Similarity=0.082  Sum_probs=177.9

Q ss_pred             CCCHHHHHHHHHHHHhhccCcch-HHHHHHc-----CCcHHHHHHHccCCHHHHHHHHHHHHHhccC-cchhHHHHhhhH
Q 008257            6 SENLLTVEKAEKTLANLEKCENN-VRQMAEN-----GRLQPLLTQILEGPQETKLSLAAFLGDLALN-SDVKVLVARTVG   78 (572)
Q Consensus         6 s~~~~~~~~A~~~L~~L~~~~~n-~~~i~~~-----g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~-~~~k~~i~~~g~   78 (572)
                      ..++++.+-....+..|-..+.. ...+.+.     ....|++.+|..++.-.+..+...|..+... ..+.......-.
T Consensus        65 ~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~  144 (429)
T cd00256          65 IDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYY  144 (429)
T ss_pred             cCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHH
Confidence            44556666666666666654333 4455554     4678899999888888888999999887652 221111111112


Q ss_pred             -HHHHHhcccC-CHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCC
Q 008257           79 -SCLINIMKSG-NMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDF  156 (572)
Q Consensus        79 -~~Lv~lL~s~-~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~  156 (572)
                       .-|...|++. +...+..|+.+|..|...+++|..+.+.+++++|+.+|+...   ....++.++.-+++-|+.+....
T Consensus       145 ~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~---~~~Ql~Y~~ll~lWlLSF~~~~~  221 (429)
T cd00256         145 FNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNAT---LGFQLQYQSIFCIWLLTFNPHAA  221 (429)
T ss_pred             HHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhcc---ccHHHHHHHHHHHHHHhccHHHH
Confidence             4555666654 467788899999999999999999999999999999997531   13466777777777775432200


Q ss_pred             CccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHH
Q 008257          157 DSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLA  236 (572)
Q Consensus       157 ~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~  236 (572)
                               ..+...+.|+.|+++++...                                            .+++.+-
T Consensus       222 ---------~~~~~~~~i~~l~~i~k~s~--------------------------------------------KEKvvRv  248 (429)
T cd00256         222 ---------EVLKRLSLIQDLSDILKEST--------------------------------------------KEKVIRI  248 (429)
T ss_pred             ---------HhhccccHHHHHHHHHHhhh--------------------------------------------hHHHHHH
Confidence                     11222344444444444221                                            1334444


Q ss_pred             HHHHHHHcCCCC-----ChhHHHHHhcccCChhhHHhhhccCC--C-----------------------ChH-HHHHHHH
Q 008257          237 SIELIQNLSPHM-----GHELADALRGAVGQLGSLIRVISENV--G-----------------------ISK-EQAAAVG  285 (572)
Q Consensus       237 a~~~L~~Ls~~~-----~~~~~~~i~~~~g~l~~Lv~lL~~~~--~-----------------------~~~-~~~~A~~  285 (572)
                      ++.+|+||....     .......+...  +++.++..|....  +                       ..+ ..+.-.+
T Consensus       249 ~l~~l~Nll~~~~~~~~~~~~~~~mv~~--~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg  326 (429)
T cd00256         249 VLAIFRNLISKRVDREVKKTAALQMVQC--KVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSG  326 (429)
T ss_pred             HHHHHHHHhhcccccchhhhHHHHHHHc--ChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcC
Confidence            444444444321     01111122221  2333333333221  0                       000 0110111


Q ss_pred             HHhcCCCC-c----HHHHHHHHhCC--ChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHH
Q 008257          286 LLAELPER-D----LGLTRQMLDEG--AFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCE  358 (572)
Q Consensus       286 ~L~~L~~~-~----~~~~~~l~~~g--~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~  358 (572)
                      .|.-=+.| +    .++...|-+.+  .+..|+.+|..+.         ++.++.-|..=++.++..   .|.-+..+.+
T Consensus       327 ~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~---------d~~~laVAc~Dige~vr~---~P~gr~i~~~  394 (429)
T cd00256         327 RLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSV---------DPIILAVACHDIGEYVRH---YPRGKDVVEQ  394 (429)
T ss_pred             CccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCC---------CcceeehhhhhHHHHHHH---CccHHHHHHH
Confidence            11111111 1    12223343332  3577888885321         222233444445566653   6888888999


Q ss_pred             cCchHHHHHHhccCCcHHHHHHHHHHHHHhh
Q 008257          359 HNLAALFIELLQSNGLDKVQMVSATALENLS  389 (572)
Q Consensus       359 ~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls  389 (572)
                      .|+=..+++|+.++ +++||.+|..|+.-+.
T Consensus       395 lg~K~~vM~Lm~h~-d~~Vr~eAL~avQklm  424 (429)
T cd00256         395 LGGKQRVMRLLNHE-DPNVRYEALLAVQKLM  424 (429)
T ss_pred             cCcHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence            99999999999999 9999999999987664

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.72  E-value=2.4e-06  Score=90.71  Aligned_cols=347  Identities=18%  Similarity=0.186  Sum_probs=235.7

Q ss_pred             CChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhc--CChhHHHHHHH
Q 008257          117 GILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISN--TGPTIECKLLQ  194 (572)
Q Consensus       117 G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~--~~~~~q~~a~~  194 (572)
                      --|+.|++-+.+.+    -.+=|+.|+..|..+++-   ++         ..+..-++++|+..|..  .++++-..++.
T Consensus        22 ETI~kLcDRvessT----L~eDRR~A~rgLKa~srk---YR---------~~Vga~Gmk~li~vL~~D~~D~E~ik~~Ld   85 (970)
T KOG0946|consen   22 ETIEKLCDRVESST----LLEDRRDAVRGLKAFSRK---YR---------EEVGAQGMKPLIQVLQRDYMDPEIIKYALD   85 (970)
T ss_pred             hHHHHHHHHHhhcc----chhhHHHHHHHHHHHHHH---HH---------HHHHHcccHHHHHHHhhccCCHHHHHHHHH
Confidence            35777777665532    244588888888888752   11         22334568999999974  68899999999


Q ss_pred             HHHHccCCCC------cc-------HHHHHH-HHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhccc
Q 008257          195 VLVGLTSSPT------TV-------LSVVSA-IKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAV  260 (572)
Q Consensus       195 aL~~l~~~~~------~~-------~~~~~~-i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~  260 (572)
                      +++.+....+      +.       ..+... |...+-|..|+.+++..|-.||..++.+|.++-++.+.++++.+...+
T Consensus        86 Tl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P  165 (970)
T KOG0946|consen   86 TLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSP  165 (970)
T ss_pred             HHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCc
Confidence            9999877542      10       122233 334678999999999999999999999999999988899988888877


Q ss_pred             CChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHH
Q 008257          261 GQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLA  340 (572)
Q Consensus       261 g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~  340 (572)
                      -+|..||.+|.....  .+|..|+-.|..++.+++.+++.++=++++..|.+++....  ..+    .--+.+.++..|.
T Consensus       166 ~gIS~lmdlL~DsrE--~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEG--g~d----GgIVveDCL~ll~  237 (970)
T KOG0946|consen  166 MGISKLMDLLRDSRE--PIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEG--GLD----GGIVVEDCLILLN  237 (970)
T ss_pred             hhHHHHHHHHhhhhh--hhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcC--CCC----CcchHHHHHHHHH
Confidence            899999999988775  79999999999999999999888888999999999998632  111    1235788998888


Q ss_pred             HHhccCCCChHHHHHHHHcCchHHHHHHhccC--CcH------HHHH-HHHHHHHHhhhhccccCCCCCCCCCCCCcccc
Q 008257          341 RVTFVLSDEPDAIALCCEHNLAALFIELLQSN--GLD------KVQM-VSATALENLSLESKNLTKLPELPPSGFCASIF  411 (572)
Q Consensus       341 ~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~------~vk~-~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~  411 (572)
                      ++-.   .|..++..+++.+.||.|.++|...  ++.      .-|. +.-.+|.-+.                      
T Consensus       238 NLLK---~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr----------------------  292 (970)
T KOG0946|consen  238 NLLK---NNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVR----------------------  292 (970)
T ss_pred             HHHh---hCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHH----------------------
Confidence            8876   4788899999999999999998753  121      1111 1112221111                      


Q ss_pred             ccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCC--CHhHHHHHHHHHHHhhhcCccchhhHHHHHhc--
Q 008257          412 PCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHT--NEKVVEASLAALSTVIDDGVDIEQGVMVLCEA--  487 (572)
Q Consensus       412 ~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~--~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~--  487 (572)
                       .+.++..  .--..      ..++..+...+.+..|..+|-++  ..+|...+.-++.+.+....+   ++..+.+.  
T Consensus       293 -~lVsP~N--t~~~~------~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~---nQ~~F~~v~~  360 (970)
T KOG0946|consen  293 -SLVSPGN--TSSIT------HQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNAR---NQDEFADVTA  360 (970)
T ss_pred             -HhcCCCC--cHHHH------HHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchH---HHHHHhhccC
Confidence             0000000  00000      12334577889999999999776  458888888888888865442   22233222  


Q ss_pred             --CC--hHHHH----HHHhhcCCHHHHHHHHHHHHHHH-cchhhhh
Q 008257          488 --QG--IKPIL----DVLLEKRTENLQRRAVWVVERIL-RTDDIAY  524 (572)
Q Consensus       488 --g~--i~~L~----~lL~~~~~~~~~~~a~~~l~~l~-~~~~~~~  524 (572)
                        +-  .+.++    .+..+......|-....++..++ .+++...
T Consensus       361 p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq~  406 (970)
T KOG0946|consen  361 PSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQR  406 (970)
T ss_pred             CCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhHH
Confidence              11  22222    33333445666666666776665 4444443

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.67  E-value=1.9e-06  Score=92.11  Aligned_cols=263  Identities=14%  Similarity=0.103  Sum_probs=189.7

Q ss_pred             HHHHHhcccC-CHHHHHHHHHHHHHhhc--CCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCC
Q 008257           79 SCLINIMKSG-NMQAREAALKALNQISS--CEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHD  155 (572)
Q Consensus        79 ~~Lv~lL~s~-~~~~~~~A~~aL~~Ls~--~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~  155 (572)
                      ..|++-|... ++-.|..|+.=|+.+-.  +++.-..+--.-.||.|+.+|+..+    ..++.-.|+.+|.+|+..-+.
T Consensus       170 kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~----n~DIMl~AcRaltyl~evlP~  245 (1051)
T KOG0168|consen  170 KKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEH----NFDIMLLACRALTYLCEVLPR  245 (1051)
T ss_pred             HHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccc----cHHHHHHHHHHHHHHHhhccc
Confidence            4566656654 67777777776666553  3333332224557999999998643    488999999999999875432


Q ss_pred             CCccccCCCccccchhhhHHHHHHHH-hcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHH
Q 008257          156 FDSITVGPDNQTLVSEDIVHNLLHLI-SNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLR  234 (572)
Q Consensus       156 ~~~~~~~~~~~~l~~~~~i~~Lv~lL-~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~  234 (572)
                      ..        ..++.+++||.|+.-| ..+.-++-++++.||-.++....      +++.++|++...+.+|+.-...+|
T Consensus       246 S~--------a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~------~AiL~AG~l~a~LsylDFFSi~aQ  311 (1051)
T KOG0168|consen  246 SS--------AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP------KAILQAGALSAVLSYLDFFSIHAQ  311 (1051)
T ss_pred             hh--------heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc------HHHHhcccHHHHHHHHHHHHHHHH
Confidence            22        2466788999998544 56888999999999999988643      577899999999999998888899


Q ss_pred             HHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCC--ChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHH
Q 008257          235 LASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVG--ISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFS  312 (572)
Q Consensus       235 ~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~--~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~  312 (572)
                      +.|+.+..|+|.....+-...+.+   ++|.|-.+|++.+.  ++..-.....+..+... +++.-+.+...|.|....+
T Consensus       312 R~AlaiaaN~Cksi~sd~f~~v~e---alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h-~~~kLdql~s~dLi~~~~q  387 (1051)
T KOG0168|consen  312 RVALAIAANCCKSIRSDEFHFVME---ALPLLTPLLSYQDKKPIESVCICLTRIADGFQH-GPDKLDQLCSHDLITNIQQ  387 (1051)
T ss_pred             HHHHHHHHHHHhcCCCccchHHHH---HHHHHHHHHhhccchhHHHHHHHHHHHHHhccc-ChHHHHHHhchhHHHHHHH
Confidence            999999999996543333345665   69999999998875  11223334444555544 5555588999999999999


Q ss_pred             HHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccC
Q 008257          313 RVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSN  372 (572)
Q Consensus       313 lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~  372 (572)
                      +|.-.++.      -...+.-..+..|..+++   +.|.....+.+.|+...|..+|..-
T Consensus       388 Llsvt~t~------Ls~~~~~~vIrmls~msS---~~pl~~~tl~k~~I~~~L~~il~g~  438 (1051)
T KOG0168|consen  388 LLSVTPTI------LSNGTYTGVIRMLSLMSS---GSPLLFRTLLKLDIADTLKRILQGY  438 (1051)
T ss_pred             HHhcCccc------ccccchhHHHHHHHHHcc---CChHHHHHHHHhhHHHHHHHHHhcc
Confidence            99753211      122234456667777775   3688888999999999998888753

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.62  E-value=2.7e-05  Score=83.26  Aligned_cols=378  Identities=12%  Similarity=0.147  Sum_probs=207.3

Q ss_pred             HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCc
Q 008257           79 SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDS  158 (572)
Q Consensus        79 ~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~  158 (572)
                      |-..++|++.++.+++.|+-|+..+-.-.++-..+    .+++...+|.+.+     ..+-..+...+..++..+.+.  
T Consensus       145 peVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~----f~~~~~~lL~ek~-----hGVL~~~l~l~~e~c~~~~~~--  213 (866)
T KOG1062|consen  145 PEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEH----FVIAFRKLLCEKH-----HGVLIAGLHLITELCKISPDA--  213 (866)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHH----hhHHHHHHHhhcC-----CceeeeHHHHHHHHHhcCHHH--
Confidence            66777888888888777777766665443332222    4566666666543     444555556666666543211  


Q ss_pred             cccCCCccccchhhhHHHHHHHHh---------------cCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHH
Q 008257          159 ITVGPDNQTLVSEDIVHNLLHLIS---------------NTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLV  223 (572)
Q Consensus       159 ~~~~~~~~~l~~~~~i~~Lv~lL~---------------~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv  223 (572)
                              .-.-...++.|+..|+               -++|.+|.+.++.|.-+.++...   ..+.|.+     .|-
T Consensus       214 --------l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~d---aSd~M~D-----iLa  277 (866)
T KOG1062|consen  214 --------LSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDAD---ASDLMND-----ILA  277 (866)
T ss_pred             --------HHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCcc---HHHHHHH-----HHH
Confidence                    0112336777777775               15778888888888888776432   2232221     122


Q ss_pred             HHhcCCC------HHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHH
Q 008257          224 QFVEAPQ------NDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGL  297 (572)
Q Consensus       224 ~lL~~~~------~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~  297 (572)
                      +.....+      ..+-=.++.++..+-..  ..    ++.  -++..|-++|.+++.  .++..|+..|......++..
T Consensus       278 qvatntdsskN~GnAILYE~V~TI~~I~~~--~~----Lrv--lainiLgkFL~n~d~--NirYvaLn~L~r~V~~d~~a  347 (866)
T KOG1062|consen  278 QVATNTDSSKNAGNAILYECVRTIMDIRSN--SG----LRV--LAINILGKFLLNRDN--NIRYVALNMLLRVVQQDPTA  347 (866)
T ss_pred             HHHhcccccccchhHHHHHHHHHHHhccCC--ch----HHH--HHHHHHHHHhcCCcc--ceeeeehhhHHhhhcCCcHH
Confidence            2222111      11222222333322211  12    222  256677777777775  67777777777766656554


Q ss_pred             HHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHH
Q 008257          298 TRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKV  377 (572)
Q Consensus       298 ~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v  377 (572)
                      .+.-.     ..++.+|++          ++..++..|+..+..++     |..+.+.+     +.-|++.|.+. +++.
T Consensus       348 vqrHr-----~tIleCL~D----------pD~SIkrralELs~~lv-----n~~Nv~~m-----v~eLl~fL~~~-d~~~  401 (866)
T KOG1062|consen  348 VQRHR-----STILECLKD----------PDVSIKRRALELSYALV-----NESNVRVM-----VKELLEFLESS-DEDF  401 (866)
T ss_pred             HHHHH-----HHHHHHhcC----------CcHHHHHHHHHHHHHHh-----ccccHHHH-----HHHHHHHHHhc-cHHH
Confidence            43222     456778876          36678888999888888     45555544     34578889988 8999


Q ss_pred             HHHHHHHHHHhhhhccccCCCCCCCCCC-C-CccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCC
Q 008257          378 QMVSATALENLSLESKNLTKLPELPPSG-F-CASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHT  455 (572)
Q Consensus       378 k~~Aa~aL~~ls~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~  455 (572)
                      |...+..+..++..=.         +.+ | ...++..|...                 ..  .+....+.-|++++.+.
T Consensus       402 k~~~as~I~~laEkfa---------P~k~W~idtml~Vl~~a-----------------G~--~V~~dv~~nll~LIa~~  453 (866)
T KOG1062|consen  402 KADIASKIAELAEKFA---------PDKRWHIDTMLKVLKTA-----------------GD--FVNDDVVNNLLRLIANA  453 (866)
T ss_pred             HHHHHHHHHHHHHhcC---------CcchhHHHHHHHHHHhc-----------------cc--ccchhhHHHHHHHHhcC
Confidence            9999988888765211         100 0 01111122110                 01  34556777777777766


Q ss_pred             CHhHHHHHHHHHHHhhhcC-------cc-chhhHHHHHhcC-------------------ChHHHHHHHhhcC-CHHHHH
Q 008257          456 NEKVVEASLAALSTVIDDG-------VD-IEQGVMVLCEAQ-------------------GIKPILDVLLEKR-TENLQR  507 (572)
Q Consensus       456 ~~~v~~~A~~aL~~l~~~~-------~~-~~~~~~~i~~~g-------------------~i~~L~~lL~~~~-~~~~~~  507 (572)
                      .++..+.+...|+.-....       ++ .+-..|+|.|.|                   .+..|..++..+. +...+.
T Consensus       454 ~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~  533 (866)
T KOG1062|consen  454 FQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKG  533 (866)
T ss_pred             CcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHH
Confidence            4444444443333222110       00 122234455544                   4566777774333 577889


Q ss_pred             HHHHHHHHHHcc-hhhhhhhcCCCCchHHHHHHhhcCCchhHHHHHH
Q 008257          508 RAVWVVERILRT-DDIAYEVSGDPNVSTALVDAFQHADYRTRQIAER  553 (572)
Q Consensus       508 ~a~~~l~~l~~~-~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~  553 (572)
                      +|+.++.++... ...      ...+.+.+.....+-+.+.|++|-.
T Consensus       534 yal~Al~KLSsr~~s~------~~ri~~lI~~~~~s~~~elQQRa~E  574 (866)
T KOG1062|consen  534 YALTALLKLSSRFHSS------SERIKQLISSYKSSLDTELQQRAVE  574 (866)
T ss_pred             HHHHHHHHHHhhcccc------HHHHHHHHHHhcccccHHHHHHHHH
Confidence            999999888732 111      1123223344445666777777754

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.62  E-value=7.7e-07  Score=89.89  Aligned_cols=217  Identities=16%  Similarity=0.119  Sum_probs=149.6

Q ss_pred             CCHHHHHHHHHHHHhhccC-cchHHHHHH------cCCcHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhH-
Q 008257            7 ENLLTVEKAEKTLANLEKC-ENNVRQMAE------NGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVG-   78 (572)
Q Consensus         7 ~~~~~~~~A~~~L~~L~~~-~~n~~~i~~------~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-   78 (572)
                      .++.+.+-....+..|-.. +.....+.+      ...+.|+++++..++.-.+..|+..|..+......+..-...+. 
T Consensus        69 ~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l  148 (312)
T PF03224_consen   69 SNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEAL  148 (312)
T ss_dssp             --HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHH
Confidence            5677778788888887764 444555554      23689999999999999999999999998764433322211344 


Q ss_pred             HHHHHhccc----CCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHH-----hccCCCCCCcchHHHHHHHHHHH
Q 008257           79 SCLINIMKS----GNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDL-----FTVGSNHLPMRLKEVSATILANV  149 (572)
Q Consensus        79 ~~Lv~lL~s----~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL-----~s~~~~~~~~~~~~~aa~~L~nl  149 (572)
                      +.++++|++    ++.+.+..|+.+|.+|...+++|..+.+.|++++|+++|     .+.   .....++.++.-+++-|
T Consensus       149 ~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~---~~~~Ql~Y~~ll~lWlL  225 (312)
T PF03224_consen  149 PKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSN---SSGIQLQYQALLCLWLL  225 (312)
T ss_dssp             HHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH------------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCC---CCchhHHHHHHHHHHHH
Confidence            888888875    445678999999999999999999999999999999999     222   23478999999999999


Q ss_pred             HhcCCCCCccccCCCccccchhhhHHHHHHHHhc-CChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcC
Q 008257          150 VNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISN-TGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEA  228 (572)
Q Consensus       150 a~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~-~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~  228 (572)
                      +.+...         ...+...+.|+.|+++++. ....+-.-++.+|.|+......  .+...|..+|+++.+-.|...
T Consensus       226 SF~~~~---------~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~--~~~~~mv~~~~l~~l~~L~~r  294 (312)
T PF03224_consen  226 SFEPEI---------AEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPK--SNIELMVLCGLLKTLQNLSER  294 (312)
T ss_dssp             TTSHHH---------HHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSST--THHHHHHHH-HHHHHHHHHSS
T ss_pred             hcCHHH---------HHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHH--HHHHHHHHccHHHHHHHHhcC
Confidence            764321         1245667799999999985 4556777888999999987653  367778877777766555543


Q ss_pred             --CCHHHHHHH
Q 008257          229 --PQNDLRLAS  237 (572)
Q Consensus       229 --~~~~v~~~a  237 (572)
                        .|+++.+.-
T Consensus       295 k~~Dedl~edl  305 (312)
T PF03224_consen  295 KWSDEDLTEDL  305 (312)
T ss_dssp             --SSHHHHHHH
T ss_pred             CCCCHHHHHHH
Confidence              356766653

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.51  E-value=3.5e-06  Score=85.11  Aligned_cols=215  Identities=17%  Similarity=0.204  Sum_probs=150.0

Q ss_pred             HHHHHhccc--CCHHHHHHHHHHHHHhhcCCCcHHHH-HH------cCChHHHHHHHhccCCCCCCcchHHHHHHHHHHH
Q 008257           79 SCLINIMKS--GNMQAREAALKALNQISSCEPSAKVL-IH------AGILPPLVKDLFTVGSNHLPMRLKEVSATILANV  149 (572)
Q Consensus        79 ~~Lv~lL~s--~~~~~~~~A~~aL~~Ls~~~~~~~~i-v~------~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nl  149 (572)
                      ..++++|+.  .+.+.....+..+..|..+++.+..+ .+      .....++++++.++     +.-++..|+.+|+.+
T Consensus        58 ~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~-----D~~i~~~a~~iLt~L  132 (312)
T PF03224_consen   58 SLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRN-----DSFIQLKAAFILTSL  132 (312)
T ss_dssp             ----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-S-----SHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCC-----CHHHHHHHHHHHHHH
Confidence            667777764  57888999999999999877665443 33      23688899988764     378899999999999


Q ss_pred             HhcCCCCCccccCCCccccchhhhHHHHHHHHhc----CChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHH
Q 008257          150 VNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISN----TGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQF  225 (572)
Q Consensus       150 a~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~----~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~l  225 (572)
                      ...+.....         -...+.++.+++.|++    ++.+++.-++++|..+...+    ..|..+.+.++++.|+.+
T Consensus       133 l~~~~~~~~---------~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~----~~R~~f~~~~~v~~l~~i  199 (312)
T PF03224_consen  133 LSQGPKRSE---------KLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSK----EYRQVFWKSNGVSPLFDI  199 (312)
T ss_dssp             HTSTTT--H---------HHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSH----HHHHHHHTHHHHHHHHHH
T ss_pred             HHcCCcccc---------chHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcc----hhHHHHHhcCcHHHHHHH
Confidence            876543211         1114688899988875    45567889999999998775    679999999999999999


Q ss_pred             h-----cCC--CHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHH-H
Q 008257          226 V-----EAP--QNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLG-L  297 (572)
Q Consensus       226 L-----~~~--~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~-~  297 (572)
                      +     .++  +..++=+++-++|.|+-.  .++++.+... +.++.|+++++.... +++-..+++++.||...+.. +
T Consensus       200 L~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~--~~~~~~~~~~-~~i~~L~~i~~~~~K-EKvvRv~la~l~Nl~~~~~~~~  275 (312)
T PF03224_consen  200 LRKQATNSNSSGIQLQYQALLCLWLLSFE--PEIAEELNKK-YLIPLLADILKDSIK-EKVVRVSLAILRNLLSKAPKSN  275 (312)
T ss_dssp             HH---------HHHHHHHHHHHHHHHTTS--HHHHHHHHTT-SHHHHHHHHHHH--S-HHHHHHHHHHHHHTTSSSSTTH
T ss_pred             HHhhcccCCCCchhHHHHHHHHHHHHhcC--HHHHHHHhcc-chHHHHHHHHHhccc-chHHHHHHHHHHHHHhccHHHH
Confidence            9     222  246777899999999966  4566677776 799999999987774 58888899999999886553 6


Q ss_pred             HHHHHhCCChHHHHHHHh
Q 008257          298 TRQMLDEGAFGLIFSRVK  315 (572)
Q Consensus       298 ~~~l~~~g~l~~Lv~lL~  315 (572)
                      ...++..|+++.+-.+..
T Consensus       276 ~~~mv~~~~l~~l~~L~~  293 (312)
T PF03224_consen  276 IELMVLCGLLKTLQNLSE  293 (312)
T ss_dssp             HHHHHHH-HHHHHHHHHS
T ss_pred             HHHHHHccHHHHHHHHhc
Confidence            677888777666666543

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.45  E-value=7.1e-06  Score=82.28  Aligned_cols=274  Identities=14%  Similarity=0.174  Sum_probs=173.8

Q ss_pred             HHHHHHhcCChHHHHHHhcCCCH--HHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHH
Q 008257          209 VVSAIKSSGATISLVQFVEAPQN--DLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGL  286 (572)
Q Consensus       209 ~~~~i~~~g~i~~Lv~lL~~~~~--~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~  286 (572)
                      ....++..||+..|+.++.+++.  .+|..|.++|..+...++.+   .+... | +..++.+-..... .+++...+++
T Consensus       172 LCD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d---~va~~-~-~~~Il~lAK~~e~-~e~aR~~~~i  245 (832)
T KOG3678|consen  172 LCDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVAENRD---RVARI-G-LGVILNLAKEREP-VELARSVAGI  245 (832)
T ss_pred             hhhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhh---HHhhc-c-chhhhhhhhhcCc-HHHHHHHHHH
Confidence            34667789999999999999985  46999999998887654444   33332 2 5555555544443 3788888999


Q ss_pred             HhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHH
Q 008257          287 LAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFI  366 (572)
Q Consensus       287 L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv  366 (572)
                      |.++-+++.+..+.+++.|++..++.-.+.          +.+.+...++-+|.+++-+  .....++.+++..+-.-|.
T Consensus       246 l~~mFKHSeet~~~Lvaa~~lD~vl~~~rR----------t~P~lLRH~ALAL~N~~L~--~~~a~qrrmveKr~~EWLF  313 (832)
T KOG3678|consen  246 LEHMFKHSEETCQRLVAAGGLDAVLYWCRR----------TDPALLRHCALALGNCALH--GGQAVQRRMVEKRAAEWLF  313 (832)
T ss_pred             HHHHhhhhHHHHHHHHhhcccchheeeccc----------CCHHHHHHHHHHhhhhhhh--chhHHHHHHHHhhhhhhhh
Confidence            999999999999999999999988765543          4677888999999998855  5677888888888766666


Q ss_pred             HHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccc-cccCccCccchhhhhhccch
Q 008257          367 ELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCR-LHRGLCSLKETFCLLEGHAV  445 (572)
Q Consensus       367 ~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~-~~~~~~~~~~~~~l~~~g~i  445 (572)
                      -|-.+. ++..+.+|+.|.+.++.+.+.............+.-++..+  ++.  ...+ .|.       ...=.--.-+
T Consensus       314 ~LA~sk-Del~R~~AClAV~vlat~KE~E~~VrkS~TlaLVEPlva~~--DP~--~FARD~hd-------~aQG~~~d~L  381 (832)
T KOG3678|consen  314 PLAFSK-DELLRLHACLAVAVLATNKEVEREVRKSGTLALVEPLVASL--DPG--RFARDAHD-------YAQGRGPDDL  381 (832)
T ss_pred             hhhcch-HHHHHHHHHHHHhhhhhhhhhhHHHhhccchhhhhhhhhcc--Ccc--hhhhhhhh-------hhccCChHHH
Confidence            555666 88899999999999887654322110000000000000000  000  0000 000       0000012356


Q ss_pred             HHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHH
Q 008257          446 EKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVE  514 (572)
Q Consensus       446 ~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~  514 (572)
                      +.||.+|+++.-+.+..++.-|+-=+.-. ..+.-...+.+-|+|..|-++. .++|+..-..|-.+|.
T Consensus       382 qRLvPlLdS~R~EAq~i~AF~l~~EAaIK-s~Q~K~kVFseIGAIQaLKeva-SS~d~vaakfAseALt  448 (832)
T KOG3678|consen  382 QRLVPLLDSNRLEAQCIGAFYLCAEAAIK-SLQGKTKVFSEIGAIQALKEVA-SSPDEVAAKFASEALT  448 (832)
T ss_pred             HHhhhhhhcchhhhhhhHHHHHHHHHHHH-HhccchhHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHH
Confidence            78999999776665554443333222111 1223356778889999999988 5777766555655554

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.43  E-value=1.5e-05  Score=83.36  Aligned_cols=352  Identities=15%  Similarity=0.124  Sum_probs=192.2

Q ss_pred             cCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHH
Q 008257          116 AGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQV  195 (572)
Q Consensus       116 ~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~a  195 (572)
                      ..++|.|..+|.+++     ....+-|..+|..++..+...    .|.....=--+-.+|.+++..++++|.++..|+.+
T Consensus       127 pelLp~L~~~L~s~d-----~n~~EgA~~AL~KIcEDsa~~----lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~c  197 (885)
T KOG2023|consen  127 PELLPQLCELLDSPD-----YNTCEGAFGALQKICEDSAQF----LDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGC  197 (885)
T ss_pred             hhHHHHHHHHhcCCc-----ccccchhHHHHHHHHhhhHHH----HhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhh
Confidence            457899999998753     567899999999998754321    11110000114579999999999999999999987


Q ss_pred             HHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcc-cCChhhHHhhhccCC
Q 008257          196 LVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGA-VGQLGSLIRVISENV  274 (572)
Q Consensus       196 L~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~-~g~l~~Lv~lL~~~~  274 (572)
                      +-.+--....  ..-  ..--.-+..|..+-...+++||.+.+.+|..|-.-....    +..+ .+.+.-.+..-+..+
T Consensus       198 vNq~i~~~~q--al~--~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dk----l~phl~~IveyML~~tqd~d  269 (885)
T KOG2023|consen  198 VNQFIIIQTQ--ALY--VHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDK----LVPHLDNIVEYMLQRTQDVD  269 (885)
T ss_pred             hhheeecCcH--HHH--HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHh----cccchHHHHHHHHHHccCcc
Confidence            7655443221  011  111234556666767788999999999999887432222    2221 023333333333334


Q ss_pred             CChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhh-ccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHH
Q 008257          275 GISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSI-QLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAI  353 (572)
Q Consensus       275 ~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~-~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~  353 (572)
                      +  .+...|.-....++.. +-.+..+.  -.++.|+-.|-+. ...+     .+..+++         .    .+.+-.
T Consensus       270 E--~VALEACEFwla~aeq-pi~~~~L~--p~l~kliPvLl~~M~Ysd-----~D~~LL~---------~----~eeD~~  326 (885)
T KOG2023|consen  270 E--NVALEACEFWLALAEQ-PICKEVLQ--PYLDKLIPVLLSGMVYSD-----DDIILLK---------N----NEEDES  326 (885)
T ss_pred             h--hHHHHHHHHHHHHhcC-cCcHHHHH--HHHHHHHHHHHccCcccc-----ccHHHhc---------C----cccccc
Confidence            3  5666666655555552 22222222  1234444333221 1110     0111111         0    011000


Q ss_pred             HHHHHcCchHHHHHHhccC---------------------CcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccc
Q 008257          354 ALCCEHNLAALFIELLQSN---------------------GLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFP  412 (572)
Q Consensus       354 ~~i~~~g~i~~Lv~lL~~~---------------------~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~  412 (572)
                      ..=+++++=|.+.+-=..+                     ++-.+|+..|.+|--|+.--+.                  
T Consensus       327 vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~------------------  388 (885)
T KOG2023|consen  327 VPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGD------------------  388 (885)
T ss_pred             CCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHH------------------
Confidence            0012233334443221111                     0123444444444333310000                  


Q ss_pred             cccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhc--CCh
Q 008257          413 CFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEA--QGI  490 (572)
Q Consensus       413 ~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~--g~i  490 (572)
                                               .+. .-..|.|-+.|.+.+=.+++++.-||+-++...-      .-++.+  .-|
T Consensus       389 -------------------------elL-~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM------~g~~p~LpeLi  436 (885)
T KOG2023|consen  389 -------------------------ELL-PILLPLLKEHLSSEEWKVREAGVLALGAIAEGCM------QGFVPHLPELI  436 (885)
T ss_pred             -------------------------HHH-HHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHh------hhcccchHHHH
Confidence                                     001 1133445555666667899999999998884211      111111  135


Q ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHHHcc--hhhhhhhcCCCCchHHHHHHhhcCCchhHHHHHHHHHhhcc
Q 008257          491 KPILDVLLEKRTENLQRRAVWVVERILRT--DDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHIDK  560 (572)
Q Consensus       491 ~~L~~lL~~~~~~~~~~~a~~~l~~l~~~--~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~~  560 (572)
                      |.|+++| .+..+-+|..+.|.|.++..+  .+.++++-.  .+-..|+..+-+++.+||+.|+.|.+-|-.
T Consensus       437 p~l~~~L-~DKkplVRsITCWTLsRys~wv~~~~~~~~f~--pvL~~ll~~llD~NK~VQEAAcsAfAtleE  505 (885)
T KOG2023|consen  437 PFLLSLL-DDKKPLVRSITCWTLSRYSKWVVQDSRDEYFK--PVLEGLLRRLLDSNKKVQEAACSAFATLEE  505 (885)
T ss_pred             HHHHHHh-ccCccceeeeeeeeHhhhhhhHhcCChHhhhH--HHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            7889999 588899999999999999876  333434333  122355566668999999999999987754

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.41  E-value=0.00021  Score=76.25  Aligned_cols=257  Identities=12%  Similarity=0.156  Sum_probs=149.0

Q ss_pred             CHHHHHHHHHHHHHcC---C-CCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCC
Q 008257          230 QNDLRLASIELIQNLS---P-HMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEG  305 (572)
Q Consensus       230 ~~~v~~~a~~~L~~Ls---~-~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g  305 (572)
                      +..+|-.|..+|.+--   + ..+.+.   =+.  -.+....+.-.+++.  +++.+|..+|..+..-..+..+.-.+..
T Consensus       187 s~~vRLaa~~aL~nsLef~~~nF~~E~---ern--~iMqvvcEatq~~d~--~i~~aa~~ClvkIm~LyY~~m~~yM~~a  259 (859)
T KOG1241|consen  187 SAAVRLAALNALYNSLEFTKANFNNEM---ERN--YIMQVVCEATQSPDE--EIQVAAFQCLVKIMSLYYEFMEPYMEQA  259 (859)
T ss_pred             chhHHHHHHHHHHHHHHHHHHhhccHh---hhc--eeeeeeeecccCCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4578888888887632   1 111111   011  234455555555664  8899999988887654444444334444


Q ss_pred             ChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHH-----HHH---------------HHcCchHHH
Q 008257          306 AFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAI-----ALC---------------CEHNLAALF  365 (572)
Q Consensus       306 ~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~-----~~i---------------~~~g~i~~L  365 (572)
                      .++..+.-+++          .+.++.-.++.-.+.++     +.++-     ...               .-.+++|.|
T Consensus       260 lfaitl~amks----------~~deValQaiEFWstic-----eEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~L  324 (859)
T KOG1241|consen  260 LFAITLAAMKS----------DNDEVALQAIEFWSTIC-----EEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVL  324 (859)
T ss_pred             HHHHHHHHHcC----------CcHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHH
Confidence            44444444443          23444444555555554     12211     001               113677888


Q ss_pred             HHHhccC------CcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhh
Q 008257          366 IELLQSN------GLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCL  439 (572)
Q Consensus       366 v~lL~~~------~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l  439 (572)
                      +++|...      .+-..-..|..+|.-++...++.                                           |
T Consensus       325 l~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~-------------------------------------------I  361 (859)
T KOG1241|consen  325 LELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDD-------------------------------------------I  361 (859)
T ss_pred             HHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhccc-------------------------------------------c
Confidence            8888762      12234455556666555432211                                           1


Q ss_pred             hhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcc
Q 008257          440 LEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRT  519 (572)
Q Consensus       440 ~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~  519 (572)
                      +. -++|.+-+-++++|-+-+++|+.|++.+...++  +.....+ ..+++|.++.++. .++--+++.++|.|.+++.+
T Consensus       362 v~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~--~~~Lt~i-V~qalp~ii~lm~-D~sl~VkdTaAwtlgrI~d~  436 (859)
T KOG1241|consen  362 VP-HVLPFIEENIQNPDWRNREAAVMAFGSILEGPE--PDKLTPI-VIQALPSIINLMS-DPSLWVKDTAAWTLGRIADF  436 (859)
T ss_pred             hh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCc--hhhhhHH-HhhhhHHHHHHhc-CchhhhcchHHHHHHHHHhh
Confidence            22 133333447788899999999999999985443  1222333 4579999999994 77788899999999999966


Q ss_pred             -hhhhhhhcCCCCchHHHHHHhh---cCCchhHHHHHHHHHhhcc
Q 008257          520 -DDIAYEVSGDPNVSTALVDAFQ---HADYRTRQIAERALKHIDK  560 (572)
Q Consensus       520 -~~~~~~~~~~~~~~~~Lv~ll~---~~~~~~~~~Aa~aL~~L~~  560 (572)
                       .+..   ......+ +++..+-   +..|++-..++||+-.|..
T Consensus       437 l~e~~---~n~~~l~-~~l~~l~~gL~DePrva~N~CWAf~~Lae  477 (859)
T KOG1241|consen  437 LPEAI---INQELLQ-SKLSALLEGLNDEPRVASNVCWAFISLAE  477 (859)
T ss_pred             chhhc---ccHhhhh-HHHHHHHHHhhhCchHHHHHHHHHHHHHH
Confidence             3222   2211222 3333332   3568999999999999983

>TIGR02270 conserved hypothetical protein

Probab=98.41  E-value=4.5e-05  Score=79.04  Aligned_cols=242  Identities=13%  Similarity=0.056  Sum_probs=162.5

Q ss_pred             CcHHHHHHHc-cCCHHHHHHHHHHHHHhccCcchhHHHHhhhHHHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHH
Q 008257           37 RLQPLLTQIL-EGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIH  115 (572)
Q Consensus        37 ~i~~Lv~~L~-~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~  115 (572)
                      +++.|+..|. ....++...++.+|.  ..++.       .++..|++.|.+.++.++..++.+|..+-          .
T Consensus        55 a~~~L~~aL~~d~~~ev~~~aa~al~--~~~~~-------~~~~~L~~~L~d~~~~vr~aaa~ALg~i~----------~  115 (410)
T TIGR02270        55 ATELLVSALAEADEPGRVACAALALL--AQEDA-------LDLRSVLAVLQAGPEGLCAGIQAALGWLG----------G  115 (410)
T ss_pred             HHHHHHHHHhhCCChhHHHHHHHHHh--ccCCh-------HHHHHHHHHhcCCCHHHHHHHHHHHhcCC----------c
Confidence            4677777884 455666555444443  11111       12488899999888889999999887532          3


Q ss_pred             cCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHH
Q 008257          116 AGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQV  195 (572)
Q Consensus       116 ~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~a  195 (572)
                      .+..+.|+.+|++.+     +.++..+..+++..-                    ....+.+..+|+++++.++..++++
T Consensus       116 ~~a~~~L~~~L~~~~-----p~vR~aal~al~~r~--------------------~~~~~~L~~~L~d~d~~Vra~A~ra  170 (410)
T TIGR02270       116 RQAEPWLEPLLAASE-----PPGRAIGLAALGAHR--------------------HDPGPALEAALTHEDALVRAAALRA  170 (410)
T ss_pred             hHHHHHHHHHhcCCC-----hHHHHHHHHHHHhhc--------------------cChHHHHHHHhcCCCHHHHHHHHHH
Confidence            456788899997542     677777766666521                    1236788888999999999999998


Q ss_pred             HHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCC
Q 008257          196 LVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVG  275 (572)
Q Consensus       196 L~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~  275 (572)
                      |..+..              ..+++.|...+.+.++.||..|+..+..+...             .++..+..+...+..
T Consensus       171 LG~l~~--------------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~~-------------~A~~~l~~~~~~~g~  223 (410)
T TIGR02270       171 LGELPR--------------RLSESTLRLYLRDSDPEVRFAALEAGLLAGSR-------------LAWGVCRRFQVLEGG  223 (410)
T ss_pred             HHhhcc--------------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCCH-------------hHHHHHHHHHhccCc
Confidence            876643              34677788888999999999999988666321             234555554444443


Q ss_pred             ChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHH
Q 008257          276 ISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIAL  355 (572)
Q Consensus       276 ~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~  355 (572)
                        .....+..++...  +++         .+++.|..++++.            .+++.++.+|..+.     ++     
T Consensus       224 --~~~~~l~~~lal~--~~~---------~a~~~L~~ll~d~------------~vr~~a~~AlG~lg-----~p-----  268 (410)
T TIGR02270       224 --PHRQRLLVLLAVA--GGP---------DAQAWLRELLQAA------------ATRREALRAVGLVG-----DV-----  268 (410)
T ss_pred             --cHHHHHHHHHHhC--Cch---------hHHHHHHHHhcCh------------hhHHHHHHHHHHcC-----Cc-----
Confidence              3333333333333  122         4567788888752            25778888888775     44     


Q ss_pred             HHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhh
Q 008257          356 CCEHNLAALFIELLQSNGLDKVQMVSATALENLSLE  391 (572)
Q Consensus       356 i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~  391 (572)
                          ..++.|++.+... .  +++.|..++..++.-
T Consensus       269 ----~av~~L~~~l~d~-~--~aR~A~eA~~~ItG~  297 (410)
T TIGR02270       269 ----EAAPWCLEAMREP-P--WARLAGEAFSLITGM  297 (410)
T ss_pred             ----chHHHHHHHhcCc-H--HHHHHHHHHHHhhCC
Confidence                4679999998876 3  999999999988763

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.33  E-value=1.1e-06  Score=59.51  Aligned_cols=40  Identities=30%  Similarity=0.272  Sum_probs=37.8

Q ss_pred             ChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhh
Q 008257          349 EPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLS  389 (572)
Q Consensus       349 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls  389 (572)
                      |+++++.+++.|++|+|+++|+++ ++.+++.|+|||+|++
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~-~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSP-DPEVQEEAAWALGNLA   40 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSS-SHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCC-CHHHHHHHHHHHHHHh
Confidence            578899999999999999999998 9999999999999987

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>TIGR02270 conserved hypothetical protein

Probab=98.31  E-value=0.00018  Score=74.70  Aligned_cols=152  Identities=10%  Similarity=-0.021  Sum_probs=99.6

Q ss_pred             hhhHHHHHHHHh-cCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC
Q 008257          171 EDIVHNLLHLIS-NTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMG  249 (572)
Q Consensus       171 ~~~i~~Lv~lL~-~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~  249 (572)
                      +..++.|+..|. .+++++...++.+|...  ..            ..++..|+..|.+.++.++..++.+|..+-..  
T Consensus        53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~~--~~------------~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~--  116 (410)
T TIGR02270        53 KAATELLVSALAEADEPGRVACAALALLAQ--ED------------ALDLRSVLAVLQAGPEGLCAGIQAALGWLGGR--  116 (410)
T ss_pred             HhHHHHHHHHHhhCCChhHHHHHHHHHhcc--CC------------hHHHHHHHHHhcCCCHHHHHHHHHHHhcCCch--
Confidence            346777777774 45666666555444211  10            11378888888888888888888888644211  


Q ss_pred             hhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchh
Q 008257          250 HELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVT  329 (572)
Q Consensus       250 ~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~  329 (572)
                                 ...+.|+.+|.+++.  .++..++.++...            .....+++..+|++          .+.
T Consensus       117 -----------~a~~~L~~~L~~~~p--~vR~aal~al~~r------------~~~~~~~L~~~L~d----------~d~  161 (410)
T TIGR02270       117 -----------QAEPWLEPLLAASEP--PGRAIGLAALGAH------------RHDPGPALEAALTH----------EDA  161 (410)
T ss_pred             -----------HHHHHHHHHhcCCCh--HHHHHHHHHHHhh------------ccChHHHHHHHhcC----------CCH
Confidence                       345677888877775  7777776665541            12345677777765          245


Q ss_pred             hHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHh
Q 008257          330 PFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENL  388 (572)
Q Consensus       330 ~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~l  388 (572)
                      .+...++.+|..+..              ...+|.|...+.+. ++.|+..|++++..+
T Consensus       162 ~Vra~A~raLG~l~~--------------~~a~~~L~~al~d~-~~~VR~aA~~al~~l  205 (410)
T TIGR02270       162 LVRAAALRALGELPR--------------RLSESTLRLYLRDS-DPEVRFAALEAGLLA  205 (410)
T ss_pred             HHHHHHHHHHHhhcc--------------ccchHHHHHHHcCC-CHHHHHHHHHHHHHc
Confidence            667778888776642              24557777788887 888888888888655

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>PF05536 Neurochondrin: Neurochondrin

Probab=98.30  E-value=0.00042  Score=74.82  Aligned_cols=231  Identities=18%  Similarity=0.187  Sum_probs=148.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHhhccCcc----hHHHHHHcCCcHHHHHHHccC-------CHHHHHHHHHHHHHhccCcchh
Q 008257            2 TSSKSENLLTVEKAEKTLANLEKCEN----NVRQMAENGRLQPLLTQILEG-------PQETKLSLAAFLGDLALNSDVK   70 (572)
Q Consensus         2 ~~~~s~~~~~~~~A~~~L~~L~~~~~----n~~~i~~~g~i~~Lv~~L~~~-------~~~~~~~aa~~L~~l~~~~~~k   70 (572)
                      .|+++.+-+-+-.+..++.++..+++    .++.+.++=+.+.|-++|+++       +...+.-|...|...+.+++..
T Consensus        12 ~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~~~~~a   91 (543)
T PF05536_consen   12 SLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCRDPELA   91 (543)
T ss_pred             HHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcCChhhh
Confidence            46778884445556677788876433    245688887888888888873       3445566777777777755543


Q ss_pred             H--HHHhhhHHHHHHhcccCCH-HHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHH
Q 008257           71 V--LVARTVGSCLINIMKSGNM-QAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILA  147 (572)
Q Consensus        71 ~--~i~~~g~~~Lv~lL~s~~~-~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~  147 (572)
                      .  .+. .-+|.|++.+.+.+. .....|+.+|..++..++.++.+++.|+|+.|++.+.++      +..++.|..++.
T Consensus        92 ~~~~~~-~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~------~~~~E~Al~lL~  164 (543)
T PF05536_consen   92 SSPQMV-SRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQ------SFQMEIALNLLL  164 (543)
T ss_pred             cCHHHH-HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhC------cchHHHHHHHHH
Confidence            2  121 124999999987666 889999999999999999999999999999999999763      567899999999


Q ss_pred             HHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCC-------ccHHHHHHHHhcCChH
Q 008257          148 NVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPT-------TVLSVVSAIKSSGATI  220 (572)
Q Consensus       148 nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~-------~~~~~~~~i~~~g~i~  220 (572)
                      ++...... .  ....+..  .-..+++.+-+.........+..++..|..+-...+       ..+...     .....
T Consensus       165 ~Lls~~~~-~--~~~~~~~--~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~-----~~l~~  234 (543)
T PF05536_consen  165 NLLSRLGQ-K--SWAEDSQ--LLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWL-----SDLRK  234 (543)
T ss_pred             HHHHhcch-h--hhhhhHH--HHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhH-----HHHHH
Confidence            99864321 1  0000000  011234444444444445556666666665533221       001111     12233


Q ss_pred             HHHHHhcCC-CHHHHHHHHHHHHHcCCCCC
Q 008257          221 SLVQFVEAP-QNDLRLASIELIQNLSPHMG  249 (572)
Q Consensus       221 ~Lv~lL~~~-~~~v~~~a~~~L~~Ls~~~~  249 (572)
                      .+..+|.++ .+..|..+..+.+.|.+..+
T Consensus       235 gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G  264 (543)
T PF05536_consen  235 GLRDILQSRLTPSQRDPALNLAASLLDLLG  264 (543)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Confidence            445566665 46778888888777765433

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.29  E-value=1.1e-05  Score=84.40  Aligned_cols=319  Identities=15%  Similarity=0.165  Sum_probs=188.2

Q ss_pred             HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcH-HH-HH---HcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcC
Q 008257           79 SCLINIMKSGNMQAREAALKALNQISSCEPSA-KV-LI---HAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSG  153 (572)
Q Consensus        79 ~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~-~~-iv---~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~  153 (572)
                      |.|.++|.+.+...++.|.+||.+++.+.... +. .-   -.=.+|.++++.+.++     +.+|..|..++-..... 
T Consensus       131 p~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~s-----pkiRs~A~~cvNq~i~~-  204 (885)
T KOG2023|consen  131 PQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPS-----PKIRSHAVGCVNQFIII-  204 (885)
T ss_pred             HHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCC-----hhHHHHHHhhhhheeec-
Confidence            88999999999999999999999999754321 00 00   1235788888887653     78888777765443221 


Q ss_pred             CCCCccccCCCccc-cchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHH
Q 008257          154 HDFDSITVGPDNQT-LVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQND  232 (572)
Q Consensus       154 ~~~~~~~~~~~~~~-l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~  232 (572)
                               +.... ..-..++..+..+-...++++|.+.+++|..|......  .....  -.+.++.++...+..+++
T Consensus       205 ---------~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d--kl~ph--l~~IveyML~~tqd~dE~  271 (885)
T KOG2023|consen  205 ---------QTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPD--KLVPH--LDNIVEYMLQRTQDVDEN  271 (885)
T ss_pred             ---------CcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH--hcccc--hHHHHHHHHHHccCcchh
Confidence                     11111 12244666777777789999999999999988765321  11111  135677777887888888


Q ss_pred             HHHHHHHHHHHcCCCC-Chh-HHHHHhcccCChhhHHhhhccCCC-ChHHH-----------------------------
Q 008257          233 LRLASIELIQNLSPHM-GHE-LADALRGAVGQLGSLIRVISENVG-ISKEQ-----------------------------  280 (572)
Q Consensus       233 v~~~a~~~L~~Ls~~~-~~~-~~~~i~~~~g~l~~Lv~lL~~~~~-~~~~~-----------------------------  280 (572)
                      |--.|+.....++... ..+ +...+.   ..+|.|++=+..++. ..-..                             
T Consensus       272 VALEACEFwla~aeqpi~~~~L~p~l~---kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~  348 (885)
T KOG2023|consen  272 VALEACEFWLALAEQPICKEVLQPYLD---KLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGE  348 (885)
T ss_pred             HHHHHHHHHHHHhcCcCcHHHHHHHHH---HHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcc
Confidence            8888998888887542 112 111222   345666554432221 00000                             


Q ss_pred             ----------------HHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhh-HHHHHHHHHHHHh
Q 008257          281 ----------------AAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTP-FLEGLLSVLARVT  343 (572)
Q Consensus       281 ----------------~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~-~~e~a~~aL~~l~  343 (572)
                                      .-.-|-|+.|+...-+.-.-+.....+|.+.-+|+..-..       ..| ++|..+-||.-++
T Consensus       349 ~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~-------~~W~vrEagvLAlGAIA  421 (885)
T KOG2023|consen  349 DADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSS-------EEWKVREAGVLALGAIA  421 (885)
T ss_pred             ccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCc-------chhhhhhhhHHHHHHHH
Confidence                            0000112222211111112334455677777777753211       223 5666666666665


Q ss_pred             ccCCCChHHHHHHHHc--CchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccc
Q 008257          344 FVLSDEPDAIALCCEH--NLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVIT  421 (572)
Q Consensus       344 ~~~~~~~~~~~~i~~~--g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (572)
                      .      ...+-+..+  -.||.|+++|.+. .+.||.-.+|+|..++.-.....                         
T Consensus       422 E------GcM~g~~p~LpeLip~l~~~L~DK-kplVRsITCWTLsRys~wv~~~~-------------------------  469 (885)
T KOG2023|consen  422 E------GCMQGFVPHLPELIPFLLSLLDDK-KPLVRSITCWTLSRYSKWVVQDS-------------------------  469 (885)
T ss_pred             H------HHhhhcccchHHHHHHHHHHhccC-ccceeeeeeeeHhhhhhhHhcCC-------------------------
Confidence            2      222223322  2689999999998 89999999999988764221110                         


Q ss_pred             cccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhc
Q 008257          422 GLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDD  473 (572)
Q Consensus       422 ~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~  473 (572)
                                  ..+| +.  ..+.+|++.+-.++.+|+++|+.|+.++-.+
T Consensus       470 ------------~~~~-f~--pvL~~ll~~llD~NK~VQEAAcsAfAtleE~  506 (885)
T KOG2023|consen  470 ------------RDEY-FK--PVLEGLLRRLLDSNKKVQEAACSAFATLEEE  506 (885)
T ss_pred             ------------hHhh-hH--HHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence                        1111 11  1445556666678899999999999988643

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.27  E-value=0.00055  Score=70.25  Aligned_cols=276  Identities=14%  Similarity=0.149  Sum_probs=183.9

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCC--CHHHHHHHHHHHHHcCCC--CC
Q 008257          174 VHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAP--QNDLRLASIELIQNLSPH--MG  249 (572)
Q Consensus       174 i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~a~~~L~~Ls~~--~~  249 (572)
                      .+.+..++-+++.+++..+.|+++.+..+..    ....+.+.+.--.++.-|..+  +..-|++|.++++.+..-  ..
T Consensus        27 ~~~i~~~lL~~~~~vraa~yRilRy~i~d~~----~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~  102 (371)
T PF14664_consen   27 GERIQCMLLSDSKEVRAAGYRILRYLISDEE----SLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGP  102 (371)
T ss_pred             HHHHHHHHCCCcHHHHHHHHHHHHHHHcCHH----HHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCc
Confidence            4444444445559999999999999988863    345666666655666666543  355689999999988743  12


Q ss_pred             hhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchh
Q 008257          250 HELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVT  329 (572)
Q Consensus       250 ~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~  329 (572)
                      .+    +..  |.+..+|.+.+.+++  ..+..++.+|+.++-.+++.   +.++||+..|++.+.+.          ..
T Consensus       103 ~~----~~~--~vvralvaiae~~~D--~lr~~cletL~El~l~~P~l---v~~~gG~~~L~~~l~d~----------~~  161 (371)
T PF14664_consen  103 KE----IPR--GVVRALVAIAEHEDD--RLRRICLETLCELALLNPEL---VAECGGIRVLLRALIDG----------SF  161 (371)
T ss_pred             cc----CCH--HHHHHHHHHHhCCch--HHHHHHHHHHHHHHhhCHHH---HHHcCCHHHHHHHHHhc----------cH
Confidence            22    222  677889999988887  89999999999998877755   78999999999999862          12


Q ss_pred             hHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccC------CcH--HHHHHHHHHHHHhhhhccccCCCCCC
Q 008257          330 PFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSN------GLD--KVQMVSATALENLSLESKNLTKLPEL  401 (572)
Q Consensus       330 ~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~------~~~--~vk~~Aa~aL~~ls~~~~~~~~~~~~  401 (572)
                      ++.+..+.++..+-    ++|..|+.++..--+..++.-..+.      .+.  +.-..++.++..+-++++        
T Consensus       162 ~~~~~l~~~lL~lL----d~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~--------  229 (371)
T PF14664_consen  162 SISESLLDTLLYLL----DSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWP--------  229 (371)
T ss_pred             hHHHHHHHHHHHHh----CCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCC--------
Confidence            25778888888887    6899988776533233333322221      122  233455556666554432        


Q ss_pred             CCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCc------
Q 008257          402 PPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGV------  475 (572)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~------  475 (572)
                             .++.+.                        .-+..++..||+.|+.++++++...+..++.+..-+.      
T Consensus       230 -------GLl~l~------------------------~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllrik~p~w~~~  278 (371)
T PF14664_consen  230 -------GLLYLS------------------------MNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRIKPPSWTES  278 (371)
T ss_pred             -------ceeeee------------------------cCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCCCcccc
Confidence                   111111                        1122488999999999999999999999998862111      


Q ss_pred             -----------cc------h---------------------h-----hHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHH
Q 008257          476 -----------DI------E---------------------Q-----GVMVLCEAQGIKPILDVLLEKRTENLQRRAVWV  512 (572)
Q Consensus       476 -----------~~------~---------------------~-----~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~  512 (572)
                                 .+      .                     +     ....+.++|-++.|+++..+.+++.+..+|.-.
T Consensus       279 ~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~L~~li~~~~d~~l~~KAtlL  358 (371)
T PF14664_consen  279 FLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEALVELIESSEDSSLSRKATLL  358 (371)
T ss_pred             hhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHHHHHHHHhcCCCchHHHHHHHH
Confidence                       00      0                     0     023466778888888888544477888888887


Q ss_pred             HHHHH
Q 008257          513 VERIL  517 (572)
Q Consensus       513 l~~l~  517 (572)
                      |..+.
T Consensus       359 L~elL  363 (371)
T PF14664_consen  359 LGELL  363 (371)
T ss_pred             HHHHH
Confidence            77765

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.26  E-value=7.4e-05  Score=75.20  Aligned_cols=175  Identities=15%  Similarity=0.162  Sum_probs=130.9

Q ss_pred             HHHHhhhH-HHHHHhcccCCHHH--HHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHH
Q 008257           71 VLVARTVG-SCLINIMKSGNMQA--REAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILA  147 (572)
Q Consensus        71 ~~i~~~g~-~~Lv~lL~s~~~~~--~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~  147 (572)
                      ..|...|+ ..|+.|+.+++.+.  +..|.+.|..+.. .+|++.++.-| +..++.+-+..    .+++++...+.+|.
T Consensus       174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~-aeN~d~va~~~-~~~Il~lAK~~----e~~e~aR~~~~il~  247 (832)
T KOG3678|consen  174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV-AENRDRVARIG-LGVILNLAKER----EPVELARSVAGILE  247 (832)
T ss_pred             hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh-hhhhhHHhhcc-chhhhhhhhhc----CcHHHHHHHHHHHH
Confidence            34555567 99999999988765  7889999998774 57888888777 56666655432    45788888888888


Q ss_pred             HHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhc
Q 008257          148 NVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVE  227 (572)
Q Consensus       148 nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~  227 (572)
                      ++-++++                                                     +....+++.||+...+-+++
T Consensus       248 ~mFKHSe-----------------------------------------------------et~~~Lvaa~~lD~vl~~~r  274 (832)
T KOG3678|consen  248 HMFKHSE-----------------------------------------------------ETCQRLVAAGGLDAVLYWCR  274 (832)
T ss_pred             HHhhhhH-----------------------------------------------------HHHHHHHhhcccchheeecc
Confidence            8876532                                                     23445678999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCCh
Q 008257          228 APQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAF  307 (572)
Q Consensus       228 ~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l  307 (572)
                      ..++.+..+++-+|.|++-+.+.+.++.+.+. .+-..|.-+-.+.++  -.+..|.-+.+-|+. +.+.-..+.+.|.+
T Consensus       275 Rt~P~lLRH~ALAL~N~~L~~~~a~qrrmveK-r~~EWLF~LA~skDe--l~R~~AClAV~vlat-~KE~E~~VrkS~Tl  350 (832)
T KOG3678|consen  275 RTDPALLRHCALALGNCALHGGQAVQRRMVEK-RAAEWLFPLAFSKDE--LLRLHACLAVAVLAT-NKEVEREVRKSGTL  350 (832)
T ss_pred             cCCHHHHHHHHHHhhhhhhhchhHHHHHHHHh-hhhhhhhhhhcchHH--HHHHHHHHHHhhhhh-hhhhhHHHhhccch
Confidence            99999999999999999987777777777775 566667776666664  567777777777776 66665666666654


Q ss_pred             H
Q 008257          308 G  308 (572)
Q Consensus       308 ~  308 (572)
                      .
T Consensus       351 a  351 (832)
T KOG3678|consen  351 A  351 (832)
T ss_pred             h
Confidence            3

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.26  E-value=8.2e-06  Score=68.51  Aligned_cols=114  Identities=18%  Similarity=0.086  Sum_probs=98.4

Q ss_pred             cCCcHHHHHHHc-cCCHHHHHHHHHHHHHhccCcchhHHHHhhhH-HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHH
Q 008257           35 NGRLQPLLTQIL-EGPQETKLSLAAFLGDLALNSDVKVLVARTVG-SCLINIMKSGNMQAREAALKALNQISSCEPSAKV  112 (572)
Q Consensus        35 ~g~i~~Lv~~L~-~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~  112 (572)
                      -++++.|+.-.+ ..+.+.|.....-|.|.+-++-|...+.+..+ ..+|+.|...++...+.+++.|+|++.++.|++.
T Consensus        15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~   94 (173)
T KOG4646|consen   15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKF   94 (173)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHH
Confidence            356677776554 45788899999999999999999999999888 9999999999999999999999999999999999


Q ss_pred             HHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcC
Q 008257          113 LIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSG  153 (572)
Q Consensus       113 iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~  153 (572)
                      |+++|++|..+..|+++     +......|+.++..|+-.+
T Consensus        95 I~ea~g~plii~~lssp-----~e~tv~sa~~~l~~l~~~~  130 (173)
T KOG4646|consen   95 IREALGLPLIIFVLSSP-----PEITVHSAALFLQLLEFGE  130 (173)
T ss_pred             HHHhcCCceEEeecCCC-----hHHHHHHHHHHHHHhcCcc
Confidence            99999999999999875     3666778888888887543

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.23  E-value=0.011  Score=65.57  Aligned_cols=509  Identities=14%  Similarity=0.136  Sum_probs=283.3

Q ss_pred             CcchHHHHHHcCCcHHHHHHHccC---------C--HHHH--HHHHHHHHHhccCcchhHHHHhh-hH-HHHHHhcccC-
Q 008257           25 CENNVRQMAENGRLQPLLTQILEG---------P--QETK--LSLAAFLGDLALNSDVKVLVART-VG-SCLINIMKSG-   88 (572)
Q Consensus        25 ~~~n~~~i~~~g~i~~Lv~~L~~~---------~--~~~~--~~aa~~L~~l~~~~~~k~~i~~~-g~-~~Lv~lL~s~-   88 (572)
                      +.-|-.+++..|+++.|...++..         +  +.++  .....++...+..++.|..+.+- .+ .-|+.++.-+ 
T Consensus      1416 SaLNaEELrRdnGle~L~tafSRCv~Vvt~~s~p~dmav~vc~~v~~c~SVaaQFE~cR~~~~EmPSiI~Dl~r~l~f~~ 1495 (2235)
T KOG1789|consen 1416 SALNAEELRRDNGLEALVTAFSRCVPVVTMSSLPDDMAVRVCIHVCDCFSVAAQFEACRQRLMEMPSIIGDLTRLLQFSN 1495 (2235)
T ss_pred             hhcCHHHHhhcccHHHHHHHHhhhheeeccccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcc
Confidence            556788999999999998887642         1  1222  33445555556677778777764 44 7777887754 


Q ss_pred             CHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccC--------CCCCCcc-------hHHHHHHHHHHHHhcC
Q 008257           89 NMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVG--------SNHLPMR-------LKEVSATILANVVNSG  153 (572)
Q Consensus        89 ~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~--------~~~~~~~-------~~~~aa~~L~nla~~~  153 (572)
                      -|.+...|+.++..++.+..-.-.+..+|++=.|+.+|...+        ..+....       +-..+..+|..|+...
T Consensus      1496 vPr~~~aa~qci~~~aVd~~LQ~~LfqAG~LWYlLp~Lf~YDyTlEESg~q~Se~~n~Q~~aNslA~~s~~ALSRL~G~~ 1575 (2235)
T KOG1789|consen 1496 LPRLSTAAAQCIRAMAVDTLLQFQLFQAGVLWYLLPHLFHYDYTLEESGVQHSEDSNKQSLANSLARSSCEALSRLAGFR 1575 (2235)
T ss_pred             ccHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHHHHHhcccccccccCccccccchHHHHHHHHHHHHHHHHHHHhccc
Confidence            467788999999999998888888999999999999885322        0011112       2233555666665433


Q ss_pred             CCCCccccCCCccc------------cchhhhHHHHHHHHhc--CChhHH------HHHHHHHH----HccCCCCcc---
Q 008257          154 HDFDSITVGPDNQT------------LVSEDIVHNLLHLISN--TGPTIE------CKLLQVLV----GLTSSPTTV---  206 (572)
Q Consensus       154 ~~~~~~~~~~~~~~------------l~~~~~i~~Lv~lL~~--~~~~~q------~~a~~aL~----~l~~~~~~~---  206 (572)
                      .+.+...-+...+.            .........+++.|++  ++|++.      ...+..+-    +.+.+....   
T Consensus      1576 AdE~~TP~N~T~~~sL~alLTPyiAr~Lk~e~~~~iLk~LNsN~E~Py~IWNn~TRaELLeFve~Qracq~~~G~~D~~y 1655 (2235)
T KOG1789|consen 1576 ADEENTPDNDTVQASLRALLTPYIARCLKLETNDMVLKTLNSNMENPYMIWNNGTRAELLEFVERQRACQTSNGPTDELY 1655 (2235)
T ss_pred             cccccCCCChhHHHHHHHhccHHHHHHHHHHHHHHHHHHhhcCCCCceeeecCccHHHHHHHHHHHHhccCCCCCchhhc
Confidence            22211110000000            0011123334444432  233221      11111111    011110000   


Q ss_pred             ----------------------------------HHHHHHHHhcCChHHHHHHhc-----------------------CC
Q 008257          207 ----------------------------------LSVVSAIKSSGATISLVQFVE-----------------------AP  229 (572)
Q Consensus       207 ----------------------------------~~~~~~i~~~g~i~~Lv~lL~-----------------------~~  229 (572)
                                                        +.....+.  .-|..++.-+.                       ++
T Consensus      1656 g~eF~Ys~h~KEliVG~ifirVYNeqPtf~l~ePk~Fa~~Ll--DyI~S~~~~l~~~~~~~~~s~d~ie~~~~V~sE~Hg 1733 (2235)
T KOG1789|consen 1656 GAEFEYSVHKKELIVGDIFIRVYNEQPTFALHEPKKFAIDLL--DYIKSHSAELTGAPKPKAISDDLIEIDWGVGSEAHG 1733 (2235)
T ss_pred             cceeeehhhccceeeeeEEEEeecCCCchhhcCcHHHHHHHH--HHHHHhHHHhcCCCCccccccchhhhhcccchhhhc
Confidence                                              00000000  00222222111                       11


Q ss_pred             C----HHHHHHHHHHHHHcCCCCChhHHHHHhccc---CChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHH
Q 008257          230 Q----NDLRLASIELIQNLSPHMGHELADALRGAV---GQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQML  302 (572)
Q Consensus       230 ~----~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~---g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~  302 (572)
                      |    .+-.+.++.+|+|+-...+ +.+..+....   |-.+.+...|..... ..++.-|+.++..++. +.++...++
T Consensus      1734 D~lPs~~~v~m~LtAL~Nli~~nP-dlasvfgSe~~lig~F~l~~~~lr~~~~-~~iq~LaL~Vi~~~Ta-n~~Cv~~~a 1810 (2235)
T KOG1789|consen 1734 DSLPTETKVLMTLTALANLVSANP-DLASVFGSEILLIGNFPLLITYLRCRKH-PKLQILALQVILLATA-NKECVTDLA 1810 (2235)
T ss_pred             CCCChHHHHHHHHHHHHHHHhhCc-chhhhccchhhhhcccHHHHHHHHHcCC-chHHHHHHHHHHHHhc-ccHHHHHHH
Confidence            1    1234567788888875532 2221111110   667778888876664 4788889999888777 677778999


Q ss_pred             hCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHH
Q 008257          303 DEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSA  382 (572)
Q Consensus       303 ~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa  382 (572)
                      +.|.+..|+.+|.+           .++.++.++..|.-++    +++++.+...+.|++--+.+++....++.++..||
T Consensus      1811 ~~~vL~~LL~lLHS-----------~PS~R~~vL~vLYAL~----S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaA 1875 (2235)
T KOG1789|consen 1811 TCNVLTTLLTLLHS-----------QPSMRARVLDVLYALS----SNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAA 1875 (2235)
T ss_pred             hhhHHHHHHHHHhc-----------ChHHHHHHHHHHHHHh----cCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHH
Confidence            99999999999986           3456788999999998    58999999999999988888888765778888888


Q ss_pred             HHHHHhhhhccccCC--C-C-CC----------CCCCCCc----------ccccc------------------cc---CC
Q 008257          383 TALENLSLESKNLTK--L-P-EL----------PPSGFCA----------SIFPC------------------FS---KQ  417 (572)
Q Consensus       383 ~aL~~ls~~~~~~~~--~-~-~~----------~~~~~~~----------~~~~~------------------~~---~~  417 (572)
                      ..++.+....-.--+  + . ..          ..|....          .++|.                  +.   ++
T Consensus      1876 eLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~ 1955 (2235)
T KOG1789|consen 1876 ELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKD 1955 (2235)
T ss_pred             HHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccC
Confidence            888877543211000  0 0 00          0000000          01110                  00   00


Q ss_pred             C-------ccc-------cccccccCcc---------CccchhhhhhccchHHHHHhhcCCCH--hHHHHHHHHHHHhhh
Q 008257          418 P-------VIT-------GLCRLHRGLC---------SLKETFCLLEGHAVEKLIALLDHTNE--KVVEASLAALSTVID  472 (572)
Q Consensus       418 ~-------~~~-------~~c~~~~~~~---------~~~~~~~l~~~g~i~~Lv~lL~~~~~--~v~~~A~~aL~~l~~  472 (572)
                      +       ++.       .-|.+.+...         -.++... .=.|-++.+.+++..+++  ....--..|+..|..
T Consensus      1956 p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~-FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r 2034 (2235)
T KOG1789|consen 1956 PTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKL-FLTELLEKVLELMSRPTPEQHELDLLTKAFVELVR 2034 (2235)
T ss_pred             CcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHH-HHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHH
Confidence            0       000       1111111000         0011111 112345556666655444  233334445555665


Q ss_pred             cCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcchhhhhhhcCCCCchHHHHHHhhcCCchhHHHHH
Q 008257          473 DGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAE  552 (572)
Q Consensus       473 ~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa  552 (572)
                      .++   ..+..+-..|-+|.+++-+ .+.+..+-..|..+|..+..++-+.+.......+. +++..+...-.-+ -.|+
T Consensus      2035 ~hP---~LADqip~LGylPK~~~Am-~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~l~~i~-~~m~~mkK~~~~~-GLA~ 2108 (2235)
T KOG1789|consen 2035 HHP---NLADQLPSLGYLPKFCTAM-CLQNTSAPRSAIRVLHELSENQFCCDAMAQLPCID-GIMKSMKKQPSLM-GLAA 2108 (2235)
T ss_pred             hCc---chhhhCCCccchHHHHHHH-HhcCCcCcHHHHHHHHHHhhccHHHHHHhccccch-hhHHHHHhcchHH-HHHH
Confidence            544   4466788889999999999 47777777788999999988877766655554554 5777666543322 2777


Q ss_pred             HHHHhhcc
Q 008257          553 RALKHIDK  560 (572)
Q Consensus       553 ~aL~~L~~  560 (572)
                      .+|.++..
T Consensus      2109 EalkR~~~ 2116 (2235)
T KOG1789|consen 2109 EALKRLMK 2116 (2235)
T ss_pred             HHHHHHHH
Confidence            77777655

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.22  E-value=0.00026  Score=70.85  Aligned_cols=283  Identities=14%  Similarity=0.071  Sum_probs=190.3

Q ss_pred             cHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhH--HHHHHhccc-CCHHHHHHHHHHHHHhhcCCCcHHHHH
Q 008257           38 LQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVG--SCLINIMKS-GNMQAREAALKALNQISSCEPSAKVLI  114 (572)
Q Consensus        38 i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~--~~Lv~lL~s-~~~~~~~~A~~aL~~Ls~~~~~~~~iv  114 (572)
                      -.+.+.+|..++.-....+++.+..++.....+....+...  ..|-..|++ .+.+....|++||.-+...+++|-.++
T Consensus       116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v  195 (442)
T KOG2759|consen  116 WLSFLNLLNRQDTFIVEMSFRILSKLACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFV  195 (442)
T ss_pred             hHHHHHHHhcCChHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheee
Confidence            56788888888877777788888888764333333222222  556667766 667888999999999999999999999


Q ss_pred             HcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcC-ChhHHHHHH
Q 008257          115 HAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNT-GPTIECKLL  193 (572)
Q Consensus       115 ~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~-~~~~q~~a~  193 (572)
                      .+.|+..|+..|.+..   ....+|.+..-+++-|+-+++-.         ..+...+.|+.|.+++++. ...+-.-++
T Consensus       196 ~adg~~~l~~~l~s~~---~~~QlQYqsifciWlLtFn~~~a---------e~~~~~~li~~L~~Ivk~~~KEKV~Rivl  263 (442)
T KOG2759|consen  196 IADGVSLLIRILASTK---CGFQLQYQSIFCIWLLTFNPHAA---------EKLKRFDLIQDLSDIVKESTKEKVTRIVL  263 (442)
T ss_pred             ecCcchhhHHHHhccC---cchhHHHHHHHHHHHhhcCHHHH---------HHHhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999995433   34789999999999997654311         1235567899999999853 444555667


Q ss_pred             HHHHHccCCCCcc---HHHHHHHHhcCChHHHHHHhcC--CCHHHHHHHHHHHHHc-------CCC--------------
Q 008257          194 QVLVGLTSSPTTV---LSVVSAIKSSGATISLVQFVEA--PQNDLRLASIELIQNL-------SPH--------------  247 (572)
Q Consensus       194 ~aL~~l~~~~~~~---~~~~~~i~~~g~i~~Lv~lL~~--~~~~v~~~a~~~L~~L-------s~~--------------  247 (572)
                      .++.|+...+...   ......|+.++..+.+=.|.+.  .|+++....-.+-..|       ++.              
T Consensus       264 ai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~W  343 (442)
T KOG2759|consen  264 AIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEW  343 (442)
T ss_pred             HHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCC
Confidence            7788888765321   1333456666655555444433  3455555433332222       111              


Q ss_pred             ----CC----hhHHHHHhcc-cCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhc
Q 008257          248 ----MG----HELADALRGA-VGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQ  318 (572)
Q Consensus       248 ----~~----~~~~~~i~~~-~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~  318 (572)
                          ..    ++-+..+.+. .-.+..|+++|+++++ +-.-..|..=|+....+.|+.+..+.+.||=..+.+++.+  
T Consensus       344 SP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~D-p~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh--  420 (442)
T KOG2759|consen  344 SPVHKSEKFWRENADRLNENNYELLKILIKLLETSND-PIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNH--  420 (442)
T ss_pred             CccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCC-CceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcC--
Confidence                00    1122333332 1468889999998875 3455566666777777788888888899999999999987  


Q ss_pred             cCCCCCCcchhhHHHHHHHHHHHHh
Q 008257          319 LGETRGSRFVTPFLEGLLSVLARVT  343 (572)
Q Consensus       319 ~~~~~~~~~~~~~~e~a~~aL~~l~  343 (572)
                              .++.++-+|+.|+..+-
T Consensus       421 --------~d~~Vry~ALlavQ~lm  437 (442)
T KOG2759|consen  421 --------EDPEVRYHALLAVQKLM  437 (442)
T ss_pred             --------CCchHHHHHHHHHHHHH
Confidence                    35667778887776553

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.16  E-value=0.00079  Score=74.00  Aligned_cols=332  Identities=16%  Similarity=0.152  Sum_probs=206.5

Q ss_pred             HHHHHHHHHHhhcc-CcchHH----HHHHcCCcHHHHHHHc-cCCHHHHHHHHHHHHHhccCcchhHHHHhhhH-HHHHH
Q 008257           11 TVEKAEKTLANLEK-CENNVR----QMAENGRLQPLLTQIL-EGPQETKLSLAAFLGDLALNSDVKVLVARTVG-SCLIN   83 (572)
Q Consensus        11 ~~~~A~~~L~~L~~-~~~n~~----~i~~~g~i~~Lv~~L~-~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~Lv~   83 (572)
                      -.+.+..+|.||-+ +++--.    +..--|.++-+..+|. .+.+.++..+...+..+..+.+.-..++..|. ..|+.
T Consensus      1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~ 1820 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLT 1820 (2235)
T ss_pred             HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHH
Confidence            45668899999876 553221    2222477777777776 45677889998888877777777777888888 89999


Q ss_pred             hcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCC
Q 008257           84 IMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGP  163 (572)
Q Consensus        84 lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~  163 (572)
                      ||.| -|-.++.++..|..|+++.+-.....+.|++..+...+...    ..+..+..||+.++.+....-...+..   
T Consensus      1821 lLHS-~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~----~~~QqRAqaAeLlaKl~Adkl~GPrV~--- 1892 (2235)
T KOG1789|consen 1821 LLHS-QPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLT----NSDQQRAQAAELLAKLQADKLTGPRVT--- 1892 (2235)
T ss_pred             HHhc-ChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhcc----CcHHHHHHHHHHHHHhhhccccCCcee---
Confidence            9976 46789999999999999999888888999999988877543    236788889999999976432211111   


Q ss_pred             CccccchhhhH------------HHHHHHHh--cCChhH------HHHHHHHHHHccC--------CCCc----------
Q 008257          164 DNQTLVSEDIV------------HNLLHLIS--NTGPTI------ECKLLQVLVGLTS--------SPTT----------  205 (572)
Q Consensus       164 ~~~~l~~~~~i------------~~Lv~lL~--~~~~~~------q~~a~~aL~~l~~--------~~~~----------  205 (572)
                          |.--.++            +..|.++.  ++.|++      +.+....+..+..        ++..          
T Consensus      1893 ----ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg 1968 (2235)
T KOG1789|consen 1893 ----ITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAG 1968 (2235)
T ss_pred             ----eehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcc
Confidence                1111111            22222332  122222      1111111111110        0000          


Q ss_pred             -----------cHHHHHHHHhc------------CChHHHHHHhcCCCHH--HHHHHHHHHHHcCCCCChhHHHHHhccc
Q 008257          206 -----------VLSVVSAIKSS------------GATISLVQFVEAPQND--LRLASIELIQNLSPHMGHELADALRGAV  260 (572)
Q Consensus       206 -----------~~~~~~~i~~~------------g~i~~Lv~lL~~~~~~--v~~~a~~~L~~Ls~~~~~~~~~~i~~~~  260 (572)
                                 ..-+|..+.+.            |-+..+.+++..++++  .-..-..++-.|-++. ...++.+..- 
T Consensus      1969 ~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~h-P~LADqip~L- 2046 (2235)
T KOG1789|consen 1969 TSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHH-PNLADQLPSL- 2046 (2235)
T ss_pred             hhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhC-cchhhhCCCc-
Confidence                       00111111111            1134455555554432  1112222333333332 3455677766 


Q ss_pred             CChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHH
Q 008257          261 GQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLA  340 (572)
Q Consensus       261 g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~  340 (572)
                      |.+|.++.-+...+.  ..-..|+++|-.|+. +.-+.+.+.....+..++..++..           .....-|+.+|-
T Consensus      2047 GylPK~~~Am~~~n~--s~P~SaiRVlH~Lse-n~~C~~AMA~l~~i~~~m~~mkK~-----------~~~~GLA~Ealk 2112 (2235)
T KOG1789|consen 2047 GYLPKFCTAMCLQNT--SAPRSAIRVLHELSE-NQFCCDAMAQLPCIDGIMKSMKKQ-----------PSLMGLAAEALK 2112 (2235)
T ss_pred             cchHHHHHHHHhcCC--cCcHHHHHHHHHHhh-ccHHHHHHhccccchhhHHHHHhc-----------chHHHHHHHHHH
Confidence            999999999877664  455778899999887 566778888888888898888751           222445777777


Q ss_pred             HHhccCCCChHHHHHHHHcCchHHHHHHhccC
Q 008257          341 RVTFVLSDEPDAIALCCEHNLAALFIELLQSN  372 (572)
Q Consensus       341 ~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~  372 (572)
                      ++-..  ...+.-.+..+.|.+|.|.+||...
T Consensus      2113 R~~~r--~~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2113 RLMKR--NTGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred             HHHHH--hHHHHHHHHhccCcHHHHHHHhccc
Confidence            66543  3445566678899999999999975

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.11  E-value=0.0038  Score=66.99  Aligned_cols=439  Identities=12%  Similarity=0.097  Sum_probs=235.2

Q ss_pred             CCCCCHHHHHHHHHHHHhhcc-CcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccC-cchhHHHH---hhhH
Q 008257            4 SKSENLLTVEKAEKTLANLEK-CENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALN-SDVKVLVA---RTVG   78 (572)
Q Consensus         4 ~~s~~~~~~~~A~~~L~~L~~-~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~-~~~k~~i~---~~g~   78 (572)
                      .+++|.+++..|...|..+.+ ..+...--.+...+.--+..+++.++++...+.+.=.+++.. -+.-....   +.|-
T Consensus       226 tq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~  305 (859)
T KOG1241|consen  226 TQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGL  305 (859)
T ss_pred             ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            589999999999999998876 555554444555666667788889999988888776655441 11111111   1111


Q ss_pred             HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCC--CCcchHHHHHHHHHHHHhcCCCC
Q 008257           79 SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNH--LPMRLKEVSATILANVVNSGHDF  156 (572)
Q Consensus        79 ~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~--~~~~~~~~aa~~L~nla~~~~~~  156 (572)
                      ||          .....|-.+               -.+.+|.|+++|...++|+  .+=..-..|..+|.-.+....+.
T Consensus       306 ~p----------~~~~fa~~a---------------~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~  360 (859)
T KOG1241|consen  306 PP----------SSKYFARQA---------------LQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDD  360 (859)
T ss_pred             Cc----------hhhHHHHHH---------------HhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhccc
Confidence            22          112222222               2468899999997644331  11233445556666666543321


Q ss_pred             CccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHH
Q 008257          157 DSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLA  236 (572)
Q Consensus       157 ~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~  236 (572)
                                 |+ +.++|-+=.-+++++..-++.++-++..+-..++.   .+..=...+++|.++.++..+..-++..
T Consensus       361 -----------Iv-~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~---~~Lt~iV~qalp~ii~lm~D~sl~VkdT  425 (859)
T KOG1241|consen  361 -----------IV-PHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEP---DKLTPIVIQALPSIINLMSDPSLWVKDT  425 (859)
T ss_pred             -----------ch-hhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCch---hhhhHHHhhhhHHHHHHhcCchhhhcch
Confidence                       11 13333333466678888889999999988887764   2222234789999999999777788999


Q ss_pred             HHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhC-------CChHH
Q 008257          237 SIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDE-------GAFGL  309 (572)
Q Consensus       237 a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~-------g~l~~  309 (572)
                      ++|.|..++++.+..+-...-.. +.+..|+.-|....   .+-..+.|++.+|+..-.+   ...+.       -.++.
T Consensus       426 aAwtlgrI~d~l~e~~~n~~~l~-~~l~~l~~gL~DeP---rva~N~CWAf~~Laea~~e---A~~s~~qt~~~t~~y~~  498 (859)
T KOG1241|consen  426 AAWTLGRIADFLPEAIINQELLQ-SKLSALLEGLNDEP---RVASNVCWAFISLAEAAYE---AAVSNGQTDPATPFYEA  498 (859)
T ss_pred             HHHHHHHHHhhchhhcccHhhhh-HHHHHHHHHhhhCc---hHHHHHHHHHHHHHHHHHH---hccCCCCCCccchhHHH
Confidence            99999999977442221111111 33444444443332   6777888888888642111   11111       23455


Q ss_pred             HHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHH---------HhccC---CcHHH
Q 008257          310 IFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIE---------LLQSN---GLDKV  377 (572)
Q Consensus       310 Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~---------lL~~~---~~~~v  377 (572)
                      ++.-|-..   ..+.+-....++..+-.||..+...   .++.--.++ .+..+...+         .|...   .-.++
T Consensus       499 ii~~Ll~~---tdr~dgnqsNLR~AAYeALmElIk~---st~~vy~~v-~~~~l~il~kl~q~i~~~~l~~~dr~q~~eL  571 (859)
T KOG1241|consen  499 IIGSLLKV---TDRADGNQSNLRSAAYEALMELIKN---STDDVYPMV-QKLTLVILEKLDQTISSQILSLADRAQLNEL  571 (859)
T ss_pred             HHHHHHhh---ccccccchhhHHHHHHHHHHHHHHc---CcHHHHHHH-HHHHHHHHHHHHHHHHHHhccHhhHHHHHHH
Confidence            55433321   1111112334455566666655532   222111111 111111111         11111   01123


Q ss_pred             HHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcC-CC
Q 008257          378 QMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDH-TN  456 (572)
Q Consensus       378 k~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~-~~  456 (572)
                      |..-+..|..+.+....  +                                       +.=+.......|++++.+ .+
T Consensus       572 Qs~Lc~~Lq~i~rk~~~--~---------------------------------------~~~~~d~iM~lflri~~s~~s  610 (859)
T KOG1241|consen  572 QSLLCNTLQSIIRKVGS--D---------------------------------------IREVSDQIMGLFLRIFESKRS  610 (859)
T ss_pred             HHHHHHHHHHHHHHccc--c---------------------------------------chhHHHHHHHHHHHHHcCCcc
Confidence            33333334333221110  0                                       000122344577888887 55


Q ss_pred             HhHHHHHHHHHHHhhhcCc-cchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcc-hhhhhhhcCCCCchH
Q 008257          457 EKVVEASLAALSTVIDDGV-DIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRT-DDIAYEVSGDPNVST  534 (572)
Q Consensus       457 ~~v~~~A~~aL~~l~~~~~-~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~-~~~~~~~~~~~~~~~  534 (572)
                      .-+.+.|..|++.++..-. .+.+...     --+|.|..=|++..+-.+-..|+.+...+++. ++.-..+..  .+..
T Consensus       611 ~~v~e~a~laV~tl~~~Lg~~F~kym~-----~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d--~~mt  683 (859)
T KOG1241|consen  611 AVVHEEAFLAVSTLAESLGKGFAKYMP-----AFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCD--ELMT  683 (859)
T ss_pred             ccchHHHHHHHHHHHHHHhHhHHHHHH-----HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHH--HHHH
Confidence            5678889999999886421 1211111     23466766664333444556677778888765 332234443  3445


Q ss_pred             HHHHHhhcCC
Q 008257          535 ALVDAFQHAD  544 (572)
Q Consensus       535 ~Lv~ll~~~~  544 (572)
                      .|++-|.++.
T Consensus       684 ~Lvq~Lss~~  693 (859)
T KOG1241|consen  684 VLVQCLSSPN  693 (859)
T ss_pred             HHHHHccCcc
Confidence            7888887765

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.10  E-value=5.6e-06  Score=55.96  Aligned_cols=40  Identities=23%  Similarity=0.345  Sum_probs=36.6

Q ss_pred             CcchhHHHHhhhH-HHHHHhcccCCHHHHHHHHHHHHHhhc
Q 008257           66 NSDVKVLVARTVG-SCLINIMKSGNMQAREAALKALNQISS  105 (572)
Q Consensus        66 ~~~~k~~i~~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~  105 (572)
                      +++++..+.+.|+ |+|+++|+++++++++.|+++|+||+.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            3578889999988 999999999999999999999999974

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.00  E-value=0.004  Score=63.64  Aligned_cols=279  Identities=22%  Similarity=0.234  Sum_probs=178.0

Q ss_pred             CChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHH
Q 008257          117 GILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVL  196 (572)
Q Consensus       117 G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL  196 (572)
                      -.++.+++++.+.     +..++..|++.++.+.                   ...+++.+..++.+.++.++..++.+|
T Consensus        43 ~~~~~~~~~l~~~-----~~~vr~~aa~~l~~~~-------------------~~~av~~l~~~l~d~~~~vr~~a~~aL   98 (335)
T COG1413          43 EAADELLKLLEDE-----DLLVRLSAAVALGELG-------------------SEEAVPLLRELLSDEDPRVRDAAADAL   98 (335)
T ss_pred             hhHHHHHHHHcCC-----CHHHHHHHHHHHhhhc-------------------hHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence            5788888999764     3788999998877663                   245799999999999999999999877


Q ss_pred             HHccCCCCccHHHHHHHHhcCChHHHHHHhc-CCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCC
Q 008257          197 VGLTSSPTTVLSVVSAIKSSGATISLVQFVE-APQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVG  275 (572)
Q Consensus       197 ~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~  275 (572)
                      ..+-.              ..+++.|+.++. +++..+|..+.++|..+...             .++..|+..+..+..
T Consensus        99 g~~~~--------------~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~-------------~a~~~l~~~l~~~~~  151 (335)
T COG1413          99 GELGD--------------PEAVPPLVELLENDENEGVRAAAARALGKLGDE-------------RALDPLLEALQDEDS  151 (335)
T ss_pred             HccCC--------------hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch-------------hhhHHHHHHhccchh
Confidence            65532              336899999999 57889999999999877533             235566666666552


Q ss_pred             ----------ChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhcc
Q 008257          276 ----------ISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFV  345 (572)
Q Consensus       276 ----------~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~  345 (572)
                                ...++..++..++.+           .+...++.+...+.+.          ...++..++.+|..+...
T Consensus       152 ~~a~~~~~~~~~~~r~~a~~~l~~~-----------~~~~~~~~l~~~l~~~----------~~~vr~~Aa~aL~~~~~~  210 (335)
T COG1413         152 GSAAAALDAALLDVRAAAAEALGEL-----------GDPEAIPLLIELLEDE----------DADVRRAAASALGQLGSE  210 (335)
T ss_pred             hhhhhhccchHHHHHHHHHHHHHHc-----------CChhhhHHHHHHHhCc----------hHHHHHHHHHHHHHhhcc
Confidence                      002344444444333           2234456677777652          335567777777777632


Q ss_pred             CCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccc
Q 008257          346 LSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCR  425 (572)
Q Consensus       346 ~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~  425 (572)
                         +         ..+.+.|...+.++ +..++..++.+|..+-                                    
T Consensus       211 ---~---------~~~~~~l~~~~~~~-~~~vr~~~~~~l~~~~------------------------------------  241 (335)
T COG1413         211 ---N---------VEAADLLVKALSDE-SLEVRKAALLALGEIG------------------------------------  241 (335)
T ss_pred             ---h---------hhHHHHHHHHhcCC-CHHHHHHHHHHhcccC------------------------------------
Confidence               1         34457777888887 8888888888775431                                    


Q ss_pred             cccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHH
Q 008257          426 LHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENL  505 (572)
Q Consensus       426 ~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~  505 (572)
                                     ....+++++..+.+.+..+...+..++...   +           -......+...+ .+.+...
T Consensus       242 ---------------~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~---~-----------~~~~~~~l~~~~-~~~~~~~  291 (335)
T COG1413         242 ---------------DEEAVDALAKALEDEDVILALLAAAALGAL---D-----------LAEAALPLLLLL-IDEANAV  291 (335)
T ss_pred             ---------------cchhHHHHHHHHhccchHHHHHHHHHhccc---C-----------chhhHHHHHHHh-hcchhhH
Confidence                           123677788888877777766555555411   0           011223444555 3566666


Q ss_pred             HHHHHHHHHHHHcchhhhhhhcCCCCchHHHHHHhhcCCchhHHHHHHHHHh
Q 008257          506 QRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKH  557 (572)
Q Consensus       506 ~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~  557 (572)
                      +..+...+..+...           .....+.....+++..++..+...+..
T Consensus       292 ~~~~~~~l~~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~~  332 (335)
T COG1413         292 RLEAALALGQIGQE-----------KAVAALLLALEDGDADVRKAALILLEG  332 (335)
T ss_pred             HHHHHHHHHhhccc-----------chHHHHHHHhcCCchhhHHHHHHHHHh
Confidence            66666666555322           111245555666666666666655543

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=98.00  E-value=0.0048  Score=64.13  Aligned_cols=468  Identities=11%  Similarity=0.041  Sum_probs=249.3

Q ss_pred             CCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHcc--CCHHHHHHHHHHHHH-hccCcchhH-HHH-------
Q 008257            6 SENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILE--GPQETKLSLAAFLGD-LALNSDVKV-LVA-------   74 (572)
Q Consensus         6 s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~--~~~~~~~~aa~~L~~-l~~~~~~k~-~i~-------   74 (572)
                      |.|+.+...|..-|.+|+..| +-+      ++.-|+..|-+  +++..|.-|+-+|.| +..+++.++ ...       
T Consensus        16 spD~n~rl~aE~ql~~l~~~d-F~q------f~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~   88 (858)
T COG5215          16 SPDPNARLRAEAQLLELQSGD-FEQ------FISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMR   88 (858)
T ss_pred             CCCCCccccHHHHHHHhcccc-HHH------HHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCC
Confidence            456666666666666666533 211      12233444433  456677777777777 444444333 222       


Q ss_pred             ---hhhH-HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHH
Q 008257           75 ---RTVG-SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVV  150 (572)
Q Consensus        75 ---~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla  150 (572)
                         ++-+ .....-|.|..+..-..|+..+..++.-+      .-.|.-|-|+.-+.....+..+...|+.+..++++++
T Consensus        89 ~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~E------lp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~c  162 (858)
T COG5215          89 HESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARME------LPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHC  162 (858)
T ss_pred             HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh------CccccchHHHHHHHHhccccCchHhHHHHHHHHHHHh
Confidence               2223 45567788888888888888888887531      1234445555544322223466889999999999998


Q ss_pred             hcCCCCCccccCCCccccchhh--hHHHHHHHHhc-CChhHHHHHHHHHHHccCC---CCccHHHHHHHHhcCChHHHHH
Q 008257          151 NSGHDFDSITVGPDNQTLVSED--IVHNLLHLISN-TGPTIECKLLQVLVGLTSS---PTTVLSVVSAIKSSGATISLVQ  224 (572)
Q Consensus       151 ~~~~~~~~~~~~~~~~~l~~~~--~i~~Lv~lL~~-~~~~~q~~a~~aL~~l~~~---~~~~~~~~~~i~~~g~i~~Lv~  224 (572)
                      .+.. ++.        .+...+  .+.....-++. ++..++..++.+|..-+.+   .-..++.|     .-..+..++
T Consensus       163 es~~-Pe~--------li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~er-----Ny~mqvvce  228 (858)
T COG5215         163 ESEA-PED--------LIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEER-----NYFMQVVCE  228 (858)
T ss_pred             hccC-HHH--------HHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhh-----chhheeeeh
Confidence            7532 111        111111  22223334443 4557788888998873221   10001112     223455667


Q ss_pred             HhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHH----
Q 008257          225 FVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQ----  300 (572)
Q Consensus       225 lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~----  300 (572)
                      ..++++.++|..|...|..+..-.-.-+ +...+. .......+.+.++++  ++...|+---+.++....+..-.    
T Consensus       229 atq~~d~e~q~aafgCl~kim~LyY~fm-~~ymE~-aL~alt~~~mks~nd--~va~qavEfWsticeEeid~~~e~~~~  304 (858)
T COG5215         229 ATQGNDEELQHAAFGCLNKIMMLYYKFM-QSYMEN-ALAALTGRFMKSQND--EVAIQAVEFWSTICEEEIDGEMEDKYL  304 (858)
T ss_pred             hccCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHhcCcch--HHHHHHHHHHHHHHHHHhhhHHHHhhc
Confidence            7788889999998888776642100111 123332 122345567777776  55555544332332211111100    


Q ss_pred             ---------HH---hCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHH-hccCCCChHHHHHHHHcCchHHHHH
Q 008257          301 ---------ML---DEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARV-TFVLSDEPDAIALCCEHNLAALFIE  367 (572)
Q Consensus       301 ---------l~---~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l-~~~~~~~~~~~~~i~~~g~i~~Lv~  367 (572)
                               |.   -.+++|.|+++|......    ...+.|=...+++++..+ +..    .  ...+.+ .++..+-+
T Consensus       305 pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed----~~~DdWn~smaA~sCLqlfaq~----~--gd~i~~-pVl~FvEq  373 (858)
T COG5215         305 PEVPAQNHGFARAAVADVLPELLSLLEKQGED----YYGDDWNPSMAASSCLQLFAQL----K--GDKIMR-PVLGFVEQ  373 (858)
T ss_pred             ccCchhhcchHHHHHHHHHHHHHHHHHhcCCC----ccccccchhhhHHHHHHHHHHH----h--hhHhHH-HHHHHHHH
Confidence                     11   235789999999762211    112344345555555443 311    1  111222 13333334


Q ss_pred             HhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHH
Q 008257          368 LLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEK  447 (572)
Q Consensus       368 lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~  447 (572)
                      -++++ +-.-++.|+.|++.+-.....                            .|          -+. + -..++|.
T Consensus       374 ni~~~-~w~nreaavmAfGSvm~gp~~----------------------------~~----------lT~-~-V~qalp~  412 (858)
T COG5215         374 NIRSE-SWANREAAVMAFGSVMHGPCE----------------------------DC----------LTK-I-VPQALPG  412 (858)
T ss_pred             hccCc-hhhhHHHHHHHhhhhhcCccH----------------------------HH----------HHh-h-HHhhhHH
Confidence            45555 666677777787765321100                            00          111 1 2348899


Q ss_pred             HHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHH-hh-cCCHHHHHHHHHHHHHHHcc-hhhhh
Q 008257          448 LIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVL-LE-KRTENLQRRAVWVVERILRT-DDIAY  524 (572)
Q Consensus       448 Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL-~~-~~~~~~~~~a~~~l~~l~~~-~~~~~  524 (572)
                      +..+...+.--++..++++++.++.+      ....|-.+|-+++.++-. .+ ..++.+-.+..|.+.++..| .+..+
T Consensus       413 i~n~m~D~~l~vk~ttAwc~g~iad~------va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~  486 (858)
T COG5215         413 IENEMSDSCLWVKSTTAWCFGAIADH------VAMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVR  486 (858)
T ss_pred             HHHhcccceeehhhHHHHHHHHHHHH------HHHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhc
Confidence            99999888889999999999999853      245666777777655332 22 23466777888999999877 22211


Q ss_pred             hh-cCCCCchHHHHHHhhc------CCchhHHHHHHHHHhhcccC
Q 008257          525 EV-SGDPNVSTALVDAFQH------ADYRTRQIAERALKHIDKIP  562 (572)
Q Consensus       525 ~~-~~~~~~~~~Lv~ll~~------~~~~~~~~Aa~aL~~L~~~~  562 (572)
                      +. ..-..+...+++-|-.      ++...|..+=.+|.-|--+.
T Consensus       487 ~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~  531 (858)
T COG5215         487 EVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILIC  531 (858)
T ss_pred             cccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhc
Confidence            11 1111222344444332      33455666666666655443

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.99  E-value=0.002  Score=69.15  Aligned_cols=68  Identities=12%  Similarity=0.236  Sum_probs=46.8

Q ss_pred             cchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHc
Q 008257          443 HAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILR  518 (572)
Q Consensus       443 g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~  518 (572)
                      -++..||.||++.++.|+..++..+-.|.+..+.  ..-+      -|..|..++....-+..|....|++..++.
T Consensus       429 tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~--~h~~------ii~~La~lldti~vp~ARA~IiWLige~~e  496 (968)
T KOG1060|consen  429 TCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPA--EHLE------ILFQLARLLDTILVPAARAGIIWLIGEYCE  496 (968)
T ss_pred             HHHHHHHHHHhcccchhHHHHHHHHHHHHhhChH--HHHH------HHHHHHHHhhhhhhhhhhceeeeeehhhhh
Confidence            3778899999999999999999999999976541  1111      234566666433335566666677776653

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.98  E-value=0.009  Score=64.64  Aligned_cols=92  Identities=13%  Similarity=0.025  Sum_probs=58.6

Q ss_pred             CCCCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhcc-CcchhHHHHhhhHHHHH
Q 008257            4 SKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLAL-NSDVKVLVARTVGSCLI   82 (572)
Q Consensus         4 ~~s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~-~~~~k~~i~~~g~~~Lv   82 (572)
                      |+|.+.-++..|+.+|.+++.-+ -.+.     ..|-..++|++.++-+|.+|+-|..++-. .++.-    +.-.+..-
T Consensus       116 L~s~nq~vVglAL~alg~i~s~E-mard-----lapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~----e~f~~~~~  185 (866)
T KOG1062|consen  116 LNSSNQYVVGLALCALGNICSPE-MARD-----LAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLV----EHFVIAFR  185 (866)
T ss_pred             ccCCCeeehHHHHHHhhccCCHH-HhHH-----hhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHH----HHhhHHHH
Confidence            56777778888999999988633 2222     23444567888999999999988877654 22211    11125555


Q ss_pred             HhcccCCHHHHHHHHHHHHHhhc
Q 008257           83 NIMKSGNMQAREAALKALNQISS  105 (572)
Q Consensus        83 ~lL~s~~~~~~~~A~~aL~~Ls~  105 (572)
                      ++|.+.++-+-..++..+..++.
T Consensus       186 ~lL~ek~hGVL~~~l~l~~e~c~  208 (866)
T KOG1062|consen  186 KLLCEKHHGVLIAGLHLITELCK  208 (866)
T ss_pred             HHHhhcCCceeeeHHHHHHHHHh
Confidence            66666565555556666666665

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.97  E-value=0.0032  Score=65.38  Aligned_cols=351  Identities=14%  Similarity=0.149  Sum_probs=198.4

Q ss_pred             HHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccch-hhhHHHHHHHHhcCChhHHHHH
Q 008257          114 IHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVS-EDIVHNLLHLISNTGPTIECKL  192 (572)
Q Consensus       114 v~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~-~~~i~~Lv~lL~~~~~~~q~~a  192 (572)
                      .-.+.+||.+..+...     +..++..|++.|.|++....+          ..+.- +.....|-++-..++..++. +
T Consensus        81 Y~~~iv~Pv~~cf~D~-----d~~vRyyACEsLYNiaKv~k~----------~v~~~Fn~iFdvL~klsaDsd~~V~~-~  144 (675)
T KOG0212|consen   81 YLEKIVPPVLNCFSDQ-----DSQVRYYACESLYNIAKVAKG----------EVLVYFNEIFDVLCKLSADSDQNVRG-G  144 (675)
T ss_pred             HHHHhhHHHHHhccCc-----cceeeeHhHHHHHHHHHHhcc----------CcccchHHHHHHHHHHhcCCcccccc-H
Confidence            5578899999999754     378999999999999975321          12222 22222333333334444433 2


Q ss_pred             HHHHHHccCCCCccHHHHHHHHh--------cCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChh
Q 008257          193 LQVLVGLTSSPTTVLSVVSAIKS--------SGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLG  264 (572)
Q Consensus       193 ~~aL~~l~~~~~~~~~~~~~i~~--------~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~  264 (572)
                      +..|-.+          .+.|..        .+.||.|-+-+...++..|..-+.-|..|-.-.+-+....+.   ..++
T Consensus       145 aeLLdRL----------ikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~---~~ld  211 (675)
T KOG0212|consen  145 AELLDRL----------IKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLP---SLLD  211 (675)
T ss_pred             HHHHHHH----------HHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcch---HHHH
Confidence            2222222          112221        223444445555667888888877777775443444332333   3677


Q ss_pred             hHHhhhccCCCChHHHHHHHHHHhcCCC---CcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHH
Q 008257          265 SLIRVISENVGISKEQAAAVGLLAELPE---RDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLAR  341 (572)
Q Consensus       265 ~Lv~lL~~~~~~~~~~~~A~~~L~~L~~---~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~  341 (572)
                      -|..+|+.++.  +++..+-.+++++-.   +++..   +--...++.++.-+.+          ..+.++..|+..+..
T Consensus       212 GLf~~LsD~s~--eVr~~~~t~l~~fL~eI~s~P~s---~d~~~~i~vlv~~l~s----------s~~~iq~~al~Wi~e  276 (675)
T KOG0212|consen  212 GLFNMLSDSSD--EVRTLTDTLLSEFLAEIRSSPSS---MDYDDMINVLVPHLQS----------SEPEIQLKALTWIQE  276 (675)
T ss_pred             HHHHHhcCCcH--HHHHHHHHHHHHHHHHHhcCccc---cCcccchhhccccccC----------CcHHHHHHHHHHHHH
Confidence            88899988886  777666555554321   11111   0112345555555543          356777788877777


Q ss_pred             HhccCCCChHHHHHHHHcCchHHHHHHhccCCcH-HHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCcc
Q 008257          342 VTFVLSDEPDAIALCCEHNLAALFIELLQSNGLD-KVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVI  420 (572)
Q Consensus       342 l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~-~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (572)
                      |..-    +...-...-.|++..+..++.+. .+ .++..+...=..+..-......                       
T Consensus       277 fV~i----~g~~~l~~~s~il~~iLpc~s~~-e~~~i~~~a~~~n~~l~~l~s~~~~-----------------------  328 (675)
T KOG0212|consen  277 FVKI----PGRDLLLYLSGILTAILPCLSDT-EEMSIKEYAQMVNGLLLKLVSSERL-----------------------  328 (675)
T ss_pred             HhcC----CCcchhhhhhhhhhhcccCCCCC-ccccHHHHHHHHHHHHHHHHhhhhh-----------------------
Confidence            7632    11111223345545555555554 33 3454444332112110000000                       


Q ss_pred             ccccccccCccCccchhhhhh-ccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhh
Q 008257          421 TGLCRLHRGLCSLKETFCLLE-GHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLE  499 (572)
Q Consensus       421 ~~~c~~~~~~~~~~~~~~l~~-~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~  499 (572)
                                   ...   ++ ...|..|-+.|.+..++++.+++.-+..|-...+    +.-......-++-|+.-| .
T Consensus       329 -------------~~~---id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p----~ql~~h~~~if~tLL~tL-s  387 (675)
T KOG0212|consen  329 -------------KEE---IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAP----GQLLVHNDSIFLTLLKTL-S  387 (675)
T ss_pred             -------------ccc---cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCc----chhhhhccHHHHHHHHhh-c
Confidence                         000   11 1256788899999999999999998888875432    223333444555677777 5


Q ss_pred             cCCHHHHHHHHHHHHHHHcchhhhhhhcCCCCchHHHHHHhhcCCchhHHHHHHHHHhhccc
Q 008257          500 KRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHIDKI  561 (572)
Q Consensus       500 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~  561 (572)
                      .+++++...+...++.++...+... +   -.+...|.+++.....-...++..++.+|+-+
T Consensus       388 d~sd~vvl~~L~lla~i~~s~~~~~-~---~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~l  445 (675)
T KOG0212|consen  388 DRSDEVVLLALSLLASICSSSNSPN-L---RKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLL  445 (675)
T ss_pred             CchhHHHHHHHHHHHHHhcCccccc-H---HHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHH
Confidence            7788888999999999997644321 1   12224677777777777777888888887653

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=97.97  E-value=9.9e-05  Score=62.15  Aligned_cols=116  Identities=17%  Similarity=0.159  Sum_probs=99.7

Q ss_pred             CCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhH-HHHHHhc
Q 008257            7 ENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVG-SCLINIM   85 (572)
Q Consensus         7 ~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~Lv~lL   85 (572)
                      .|.++++.-..=|.|.++++.|...+.+..+++-++..|.+.++..+..+...|+|++.+..+++.|.+.++ |..+..|
T Consensus        29 t~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~ea~g~plii~~l  108 (173)
T KOG4646|consen   29 TNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIREALGLPLIIFVL  108 (173)
T ss_pred             ccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHHHhcCCceEEeec
Confidence            466788888888899999999999999999999999999999999999999999999999999999999877 9999999


Q ss_pred             ccCCHHHHHHHHHHHHHhhcCCCc-HHHHHHcCChHHHHHHH
Q 008257           86 KSGNMQAREAALKALNQISSCEPS-AKVLIHAGILPPLVKDL  126 (572)
Q Consensus        86 ~s~~~~~~~~A~~aL~~Ls~~~~~-~~~iv~~G~i~~Lv~lL  126 (572)
                      +|........|+..|..|+-.... +..+.    -|+.++..
T Consensus       109 ssp~e~tv~sa~~~l~~l~~~~Rt~r~ell----~p~Vv~~v  146 (173)
T KOG4646|consen  109 SSPPEITVHSAALFLQLLEFGERTERDELL----SPAVVRTV  146 (173)
T ss_pred             CCChHHHHHHHHHHHHHhcCcccchhHHhc----cHHHHHHH
Confidence            999989999999999998864433 55553    34445544

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=97.95  E-value=0.01  Score=62.72  Aligned_cols=341  Identities=15%  Similarity=0.153  Sum_probs=197.5

Q ss_pred             cHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhH-HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHc
Q 008257           38 LQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVG-SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHA  116 (572)
Q Consensus        38 i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~  116 (572)
                      ++.|+.-+..+++.+|+-.+.+|..+....+.+.   ..-. +.+.++|.+.....+..|++.+..+..+. ....+.+.
T Consensus        98 ~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~---~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~-~i~~~~~~  173 (569)
T KOG1242|consen   98 IEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLS---GEYVLELLLELLTSTKIAERAGAAYGLAGLVNGL-GIESLKEF  173 (569)
T ss_pred             HHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccC---HHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCc-HHhhhhhh
Confidence            4555666677788888888888876654222111   1123 88889999888889999999999887542 34566688


Q ss_pred             CChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHh---cCChhHHHHHH
Q 008257          117 GILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLIS---NTGPTIECKLL  193 (572)
Q Consensus       117 G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~---~~~~~~q~~a~  193 (572)
                      +.+..|-.......    +..-++ ++..-.......-           ....+.+.++.+-.+|.   +..+.+|..+.
T Consensus       174 ~~l~~l~~ai~dk~----~~~~re-~~~~a~~~~~~~L-----------g~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~  237 (569)
T KOG1242|consen  174 GFLDNLSKAIIDKK----SALNRE-AALLAFEAAQGNL-----------GPPFEPYIVPILPSILTNFGDKINKVREAAV  237 (569)
T ss_pred             hHHHHHHHHhcccc----hhhcHH-HHHHHHHHHHHhc-----------CCCCCchHHhhHHHHHHHhhccchhhhHHHH
Confidence            88888888876542    122233 2222222211110           02244556666666665   34566776555


Q ss_pred             HHHHHccC-CCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhcc
Q 008257          194 QVLVGLTS-SPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISE  272 (572)
Q Consensus       194 ~aL~~l~~-~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~  272 (572)
                      .+...+-. .+..  .++      -.+|+++.-+....-..+..++.+|..++.+.+..+...+.   ..+|.|.+.|..
T Consensus       238 ~a~kai~~~~~~~--aVK------~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp---~iiP~lsevl~D  306 (569)
T KOG1242|consen  238 EAAKAIMRCLSAY--AVK------LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLP---DLIPVLSEVLWD  306 (569)
T ss_pred             HHHHHHHHhcCcc--hhh------HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHh---HhhHHHHHHHcc
Confidence            44433321 1110  111      12444444444334567889999999999886655532222   589999999988


Q ss_pred             CCCChHHHHHHHHHHhcCCC--CcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCCh
Q 008257          273 NVGISKEQAAAVGLLAELPE--RDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEP  350 (572)
Q Consensus       273 ~~~~~~~~~~A~~~L~~L~~--~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~  350 (572)
                      ...  +++.++..++..+..  .++++ +     -.+|.|+..+.++.          +. ...++..|..=+...+=++
T Consensus       307 T~~--evr~a~~~~l~~~~svidN~dI-~-----~~ip~Lld~l~dp~----------~~-~~e~~~~L~~ttFV~~V~~  367 (569)
T KOG1242|consen  307 TKP--EVRKAGIETLLKFGSVIDNPDI-Q-----KIIPTLLDALADPS----------CY-TPECLDSLGATTFVAEVDA  367 (569)
T ss_pred             CCH--HHHHHHHHHHHHHHHhhccHHH-H-----HHHHHHHHHhcCcc----------cc-hHHHHHhhcceeeeeeecc
Confidence            885  899999999887754  23333 2     23577777777632          01 1223333332111100012


Q ss_pred             HHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCc
Q 008257          351 DAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGL  430 (572)
Q Consensus       351 ~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~  430 (572)
                      .....     .+|.|-.-|... +...++.++..++|++.-.++....                         .|     
T Consensus       368 psLal-----mvpiL~R~l~eR-st~~kr~t~~IidNm~~LveDp~~l-------------------------ap-----  411 (569)
T KOG1242|consen  368 PSLAL-----MVPILKRGLAER-STSIKRKTAIIIDNMCKLVEDPKDL-------------------------AP-----  411 (569)
T ss_pred             hhHHH-----HHHHHHHHHhhc-cchhhhhHHHHHHHHHHhhcCHHHH-------------------------hh-----
Confidence            11111     245555555555 7788999999999998754321110                         00     


Q ss_pred             cCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhc
Q 008257          431 CSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDD  473 (572)
Q Consensus       431 ~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~  473 (572)
                             ++-+  -+|.|=.-+....|+++..+.+||+.+..+
T Consensus       412 -------fl~~--Llp~lk~~~~d~~PEvR~vaarAL~~l~e~  445 (569)
T KOG1242|consen  412 -------FLPS--LLPGLKENLDDAVPEVRAVAARALGALLER  445 (569)
T ss_pred             -------hHHH--HhhHHHHHhcCCChhHHHHHHHHHHHHHHH
Confidence                   0111  334444455567899999999999888754

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=97.87  E-value=0.0019  Score=68.80  Aligned_cols=258  Identities=12%  Similarity=0.145  Sum_probs=149.3

Q ss_pred             HHHHccCCHHHHHHHHHHHHHhccCcchhHH--HHhhhHHHHHHhcccCCHHHHHHHHHHHHHhhcCCC-cHHHHHHcCC
Q 008257           42 LTQILEGPQETKLSLAAFLGDLALNSDVKVL--VARTVGSCLINIMKSGNMQAREAALKALNQISSCEP-SAKVLIHAGI  118 (572)
Q Consensus        42 v~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~--i~~~g~~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~-~~~~iv~~G~  118 (572)
                      +.+|.+.++.+|+.||..++.++.--.++..  +-..-+-.|.+.|..+.+++.-.-++|+..+...-. .+..=--.|.
T Consensus       805 L~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dl  884 (1172)
T KOG0213|consen  805 LWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDL  884 (1172)
T ss_pred             HHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhh
Confidence            4678888999999999999888752222221  222223778899999999886555555544443211 1111113578


Q ss_pred             hHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHH
Q 008257          119 LPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVG  198 (572)
Q Consensus       119 i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~  198 (572)
                      +|.|..+|++.+     ..+++++...++.++..+..+.                                         
T Consensus       885 lPrltPILknrh-----eKVqen~IdLvg~IadrgpE~v-----------------------------------------  918 (1172)
T KOG0213|consen  885 LPRLTPILKNRH-----EKVQENCIDLVGTIADRGPEYV-----------------------------------------  918 (1172)
T ss_pred             cccchHhhhhhH-----HHHHHHHHHHHHHHHhcCcccC-----------------------------------------
Confidence            899999998775     6788888888888887554221                                         


Q ss_pred             ccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChH
Q 008257          199 LTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISK  278 (572)
Q Consensus       199 l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~  278 (572)
                               ..|+-|+   ..--|+++|.+.+.++|.+|...+.++++.-+..            ..|.-+|.+-.. ++
T Consensus       919 ---------~aREWMR---IcfeLlelLkahkK~iRRaa~nTfG~IakaIGPq------------dVLatLlnnLkv-qe  973 (1172)
T KOG0213|consen  919 ---------SAREWMR---ICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQ------------DVLATLLNNLKV-QE  973 (1172)
T ss_pred             ---------CHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHH------------HHHHHHHhcchH-HH
Confidence                     1233333   3345788999989999999999999887553221            223333333221 12


Q ss_pred             HHHHHHHHHhcCCCCcHHHHHHHH-hCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHH
Q 008257          279 EQAAAVGLLAELPERDLGLTRQML-DEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCC  357 (572)
Q Consensus       279 ~~~~A~~~L~~L~~~~~~~~~~l~-~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~  357 (572)
                      -|.....++        .+ ..+. -+|-+..|-.++.+-.+       ....++.+.+.+|+.+=..  ......+.+ 
T Consensus       974 Rq~RvcTtv--------aI-aIVaE~c~pFtVLPalmneYrt-------Pe~nVQnGVLkalsf~Fey--igemskdYi- 1034 (1172)
T KOG0213|consen  974 RQNRVCTTV--------AI-AIVAETCGPFTVLPALMNEYRT-------PEANVQNGVLKALSFMFEY--IGEMSKDYI- 1034 (1172)
T ss_pred             HHhchhhhh--------hh-hhhhhhcCchhhhHHHHhhccC-------chhHHHHhHHHHHHHHHHH--HHHHhhhHH-
Confidence            221111110        00 1111 12444445555544211       2344566777777654311  011122222 


Q ss_pred             HcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhh
Q 008257          358 EHNLAALFIELLQSNGLDKVQMVSATALENLSLE  391 (572)
Q Consensus       358 ~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~  391 (572)
                       +-+.|.|-+-|.+. +..-+.-|+.++.+++.+
T Consensus      1035 -yav~PlleDAlmDr-D~vhRqta~~~I~Hl~Lg 1066 (1172)
T KOG0213|consen 1035 -YAVTPLLEDALMDR-DLVHRQTAMNVIKHLALG 1066 (1172)
T ss_pred             -HHhhHHHHHhhccc-cHHHHHHHHHHHHHHhcC
Confidence             23568888888887 777788888888888753

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=97.87  E-value=0.013  Score=59.87  Aligned_cols=188  Identities=21%  Similarity=0.272  Sum_probs=135.7

Q ss_pred             CCcHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhHHHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHH
Q 008257           36 GRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIH  115 (572)
Q Consensus        36 g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~  115 (572)
                      -.++.+++.+.+.+..+|..++..++.+..         +..+|.|.++|.+.++.++..|+.+|..+-.          
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~---------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~----------  103 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELGS---------EEAVPLLRELLSDEDPRVRDAAADALGELGD----------  103 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhch---------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC----------
Confidence            357888888888888889888888663332         1234999999999999999999998777542          


Q ss_pred             cCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCCh---------
Q 008257          116 AGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGP---------  186 (572)
Q Consensus       116 ~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~---------  186 (572)
                      .-.+|+|+++|...    .+..++..|+++|+.+-.                   +..+.+++..+.....         
T Consensus       104 ~~a~~~li~~l~~d----~~~~vR~~aa~aL~~~~~-------------------~~a~~~l~~~l~~~~~~~a~~~~~~  160 (335)
T COG1413         104 PEAVPPLVELLEND----ENEGVRAAAARALGKLGD-------------------ERALDPLLEALQDEDSGSAAAALDA  160 (335)
T ss_pred             hhHHHHHHHHHHcC----CcHhHHHHHHHHHHhcCc-------------------hhhhHHHHHHhccchhhhhhhhccc
Confidence            24789999999851    347899999999998832                   3458888888876552         


Q ss_pred             ---hHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCCh
Q 008257          187 ---TIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQL  263 (572)
Q Consensus       187 ---~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l  263 (572)
                         .++..++.+|..+              .+...++.+..++.+.+..+|..|..+|..+..+.          . ...
T Consensus       161 ~~~~~r~~a~~~l~~~--------------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~----------~-~~~  215 (335)
T COG1413         161 ALLDVRAAAAEALGEL--------------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN----------V-EAA  215 (335)
T ss_pred             hHHHHHHHHHHHHHHc--------------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch----------h-hHH
Confidence               2333444433322              23446888889998888889999998888776552          0 244


Q ss_pred             hhHHhhhccCCCChHHHHHHHHHHhcCCC
Q 008257          264 GSLIRVISENVGISKEQAAAVGLLAELPE  292 (572)
Q Consensus       264 ~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~  292 (572)
                      +.+...+..++.  .++..++..++.+..
T Consensus       216 ~~l~~~~~~~~~--~vr~~~~~~l~~~~~  242 (335)
T COG1413         216 DLLVKALSDESL--EVRKAALLALGEIGD  242 (335)
T ss_pred             HHHHHHhcCCCH--HHHHHHHHHhcccCc
Confidence            667777777774  788888888877644

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.85  E-value=0.0066  Score=64.78  Aligned_cols=220  Identities=14%  Similarity=0.211  Sum_probs=150.0

Q ss_pred             hhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCh
Q 008257          171 EDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGH  250 (572)
Q Consensus       171 ~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~  250 (572)
                      .+.-+.++.||+++.|.++.+|+.+++.+.-....  .+|      -.+|.|++-|+.+|+.|+..|+..+..|++.++.
T Consensus       143 RDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPe--Alr------~~FprL~EkLeDpDp~V~SAAV~VICELArKnPk  214 (877)
T KOG1059|consen  143 RDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPE--ALR------PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQ  214 (877)
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhH--hHh------hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCc
Confidence            44667789999999999999999999988765321  233      4799999999999999999999999999987665


Q ss_pred             hHHHHHhcccCChhhHHhhhccCC-CChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchh
Q 008257          251 ELADALRGAVGQLGSLIRVISENV-GISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVT  329 (572)
Q Consensus       251 ~~~~~i~~~~g~l~~Lv~lL~~~~-~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~  329 (572)
                      ..   +.    .-|.+.++|.+.+ .|.-++  -+.+.++|+--+|.....     .+|+|.+++.+.         ...
T Consensus       215 ny---L~----LAP~ffkllttSsNNWmLIK--iiKLF~aLtplEPRLgKK-----Lieplt~li~sT---------~Am  271 (877)
T KOG1059|consen  215 NY---LQ----LAPLFYKLLVTSSNNWVLIK--LLKLFAALTPLEPRLGKK-----LIEPITELMEST---------VAM  271 (877)
T ss_pred             cc---cc----ccHHHHHHHhccCCCeehHH--HHHHHhhccccCchhhhh-----hhhHHHHHHHhh---------HHH
Confidence            52   32    2377888886554 343343  366777887778887664     468999998762         122


Q ss_pred             hHHHHHHHHHH--HHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCC
Q 008257          330 PFLEGLLSVLA--RVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFC  407 (572)
Q Consensus       330 ~~~e~a~~aL~--~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~  407 (572)
                      ++.-.++..+.  ++..+..++....+.+     +.-|-.++.+. ++..|.-+.-|+.-+....+..            
T Consensus       272 SLlYECvNTVVa~s~s~g~~d~~asiqLC-----vqKLr~fieds-DqNLKYlgLlam~KI~ktHp~~------------  333 (877)
T KOG1059|consen  272 SLLYECVNTVVAVSMSSGMSDHSASIQLC-----VQKLRIFIEDS-DQNLKYLGLLAMSKILKTHPKA------------  333 (877)
T ss_pred             HHHHHHHHHheeehhccCCCCcHHHHHHH-----HHHHhhhhhcC-CccHHHHHHHHHHHHhhhCHHH------------
Confidence            22222332221  2222211233333332     34455566777 8899998888887775432211            


Q ss_pred             ccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhh
Q 008257          408 ASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVID  472 (572)
Q Consensus       408 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~  472 (572)
                                                     +..  --..++++|+..|+.++..|+..|+.++.
T Consensus       334 -------------------------------Vqa--~kdlIlrcL~DkD~SIRlrALdLl~gmVs  365 (877)
T KOG1059|consen  334 -------------------------------VQA--HKDLILRCLDDKDESIRLRALDLLYGMVS  365 (877)
T ss_pred             -------------------------------HHH--hHHHHHHHhccCCchhHHHHHHHHHHHhh
Confidence                                           111  22467899999999999999999999985

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.80  E-value=0.00013  Score=58.58  Aligned_cols=87  Identities=24%  Similarity=0.332  Sum_probs=69.3

Q ss_pred             hHHHHHHh-ccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhh
Q 008257          362 AALFIELL-QSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLL  440 (572)
Q Consensus       362 i~~Lv~lL-~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~  440 (572)
                      ||.|++.| +++ ++.+|..|+.+|+.+-                                                   
T Consensus         1 i~~L~~~l~~~~-~~~vr~~a~~~L~~~~---------------------------------------------------   28 (88)
T PF13646_consen    1 IPALLQLLQNDP-DPQVRAEAARALGELG---------------------------------------------------   28 (88)
T ss_dssp             HHHHHHHHHTSS-SHHHHHHHHHHHHCCT---------------------------------------------------
T ss_pred             CHHHHHHHhcCC-CHHHHHHHHHHHHHcC---------------------------------------------------
Confidence            68899999 666 9999999999987431                                                   


Q ss_pred             hccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHH
Q 008257          441 EGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVE  514 (572)
Q Consensus       441 ~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~  514 (572)
                      +..+++.|+++++++++.|+..|+.+|+.+-.              ..+++.|.+++.++.+..++..|+.+|.
T Consensus        29 ~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~--------------~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   29 DPEAIPALIELLKDEDPMVRRAAARALGRIGD--------------PEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH--------------HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------------HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence            22479999999999999999999999998742              1267889999964556677888888763

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=97.79  E-value=0.076  Score=57.19  Aligned_cols=251  Identities=13%  Similarity=0.170  Sum_probs=146.6

Q ss_pred             hHHHHHHhcCCCHHHHHHHHHHHHHcCC---CCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCC---
Q 008257          219 TISLVQFVEAPQNDLRLASIELIQNLSP---HMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPE---  292 (572)
Q Consensus       219 i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~---~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~---  292 (572)
                      +...+..|+++.+.+|..|+.+++.++.   ..+++  +.+..- |  -.|.+-|....+  ++.-..+++|..+..   
T Consensus       801 ~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee--~~m~~l-G--vvLyEylgeeyp--EvLgsILgAikaI~nvig  873 (1172)
T KOG0213|consen  801 CSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEE--KLMGHL-G--VVLYEYLGEEYP--EVLGSILGAIKAIVNVIG  873 (1172)
T ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHH--HHHHHh-h--HHHHHhcCcccH--HHHHHHHHHHHHHHHhcc
Confidence            3345567889999999999999998873   11222  123322 3  357777777664  554444444433322   


Q ss_pred             ---CcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCCh---HHHHHHHHcCchHHHH
Q 008257          293 ---RDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEP---DAIALCCEHNLAALFI  366 (572)
Q Consensus       293 ---~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~---~~~~~i~~~g~i~~Lv  366 (572)
                         -.+.+      .|.+|.|.-+|++          -++.++++++..+..++....+-.   ++.+.+.      -|+
T Consensus       874 m~km~pPi------~dllPrltPILkn----------rheKVqen~IdLvg~IadrgpE~v~aREWMRIcf------eLl  931 (1172)
T KOG0213|consen  874 MTKMTPPI------KDLLPRLTPILKN----------RHEKVQENCIDLVGTIADRGPEYVSAREWMRICF------ELL  931 (1172)
T ss_pred             ccccCCCh------hhhcccchHhhhh----------hHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHH------HHH
Confidence               11122      2778999999986          256789999999888885311111   2333332      378


Q ss_pred             HHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchH
Q 008257          367 ELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVE  446 (572)
Q Consensus       367 ~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~  446 (572)
                      ++|+++ .-.+++.|...++.++.-.+                                               -...+.
T Consensus       932 elLkah-kK~iRRaa~nTfG~IakaIG-----------------------------------------------PqdVLa  963 (1172)
T KOG0213|consen  932 ELLKAH-KKEIRRAAVNTFGYIAKAIG-----------------------------------------------PQDVLA  963 (1172)
T ss_pred             HHHHHH-HHHHHHHHHhhhhHHHHhcC-----------------------------------------------HHHHHH
Confidence            999998 89999999999888764211                                               112333


Q ss_pred             HHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhc--CCHHHHHHHHHHHHHHHcc-hhhh
Q 008257          447 KLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEK--RTENLQRRAVWVVERILRT-DDIA  523 (572)
Q Consensus       447 ~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~~~~~~a~~~l~~l~~~-~~~~  523 (572)
                      .|++=|...+...+.-..-|++..+             .-||-+..|-.++++.  ++-.+|...+.++.-+|.- .+..
T Consensus       964 tLlnnLkvqeRq~RvcTtvaIaIVa-------------E~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~Feyigems 1030 (1172)
T KOG0213|consen  964 TLLNNLKVQERQNRVCTTVAIAIVA-------------ETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMS 1030 (1172)
T ss_pred             HHHhcchHHHHHhchhhhhhhhhhh-------------hhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHh
Confidence            4444333322211111111122111             1234444455555443  3445677777777767643 4444


Q ss_pred             hhhcCCCCchHHHHHHhhcCCchhHHHHHHHHHhhccc
Q 008257          524 YEVSGDPNVSTALVDAFQHADYRTRQIAERALKHIDKI  561 (572)
Q Consensus       524 ~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~  561 (572)
                      ..+.-  .+.+.|-+.|-+.|+.-|+.|+.++.||+--
T Consensus      1031 kdYiy--av~PlleDAlmDrD~vhRqta~~~I~Hl~Lg 1066 (1172)
T KOG0213|consen 1031 KDYIY--AVTPLLEDALMDRDLVHRQTAMNVIKHLALG 1066 (1172)
T ss_pred             hhHHH--HhhHHHHHhhccccHHHHHHHHHHHHHHhcC
Confidence            44443  1224677888899999999999999998763

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=97.74  E-value=0.021  Score=60.47  Aligned_cols=404  Identities=15%  Similarity=0.133  Sum_probs=215.8

Q ss_pred             cCCHHHHHHHHHHHHHhccCcchhHHHHhhhH-HHHHHhcccCCHH-HHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHH
Q 008257           47 EGPQETKLSLAAFLGDLALNSDVKVLVARTVG-SCLINIMKSGNMQ-AREAALKALNQISSCEPSAKVLIHAGILPPLVK  124 (572)
Q Consensus        47 ~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~Lv~lL~s~~~~-~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~  124 (572)
                      +....++-+++.+...... ..+.+.+.  .. |..-+.|++.... .+++-.---..++.+-+..+. .-.-.+..|..
T Consensus        28 d~~~~v~~~ml~a~~~~~~-~~~~~~v~--~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~d~-~~~~~~~~~~~  103 (569)
T KOG1242|consen   28 DRRIDVRGNMLEAGEAAIN-QHGDQNVL--NLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIVDP-RPISIIEILLE  103 (569)
T ss_pred             CcchhhHHhHHHHHHHHHH-hhhHHHHH--HHHHHHHHHhccchhHHHhhhhHHHHHHHHHhccccCc-chhHHHHHHHH
Confidence            3445566666666543222 11222211  12 5555566654433 333333322333332111000 01123445555


Q ss_pred             HHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCC
Q 008257          125 DLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPT  204 (572)
Q Consensus       125 lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~  204 (572)
                      -++.+     +..+|+..+.+|.-+.....            ......+.+.+.+++..++..-+..+.+.+..+..+.-
T Consensus       104 ~~~tp-----s~~~q~~~~~~l~~~~~~~~------------~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~  166 (569)
T KOG1242|consen  104 ELDTP-----SKSVQRAVSTCLPPLVVLSK------------GLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLG  166 (569)
T ss_pred             hcCCC-----cHHHHHHHHHHhhhHHHHhh------------ccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcH
Confidence            55543     46777777777776654322            12335578888999998888889999999999988753


Q ss_pred             ccHHHHHHHHhcCChHHHHHHhcCCCHHH-HHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCC-ChHHHHH
Q 008257          205 TVLSVVSAIKSSGATISLVQFVEAPQNDL-RLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVG-ISKEQAA  282 (572)
Q Consensus       205 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v-~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~-~~~~~~~  282 (572)
                           ...+.+.+.+..|-....+..... ++.+.-+......+.+..     .+ ++.++.|-.+|.+-.+ ..++|.+
T Consensus       167 -----i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~-----~E-Pyiv~~lp~il~~~~d~~~~Vr~A  235 (569)
T KOG1242|consen  167 -----IESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPP-----FE-PYIVPILPSILTNFGDKINKVREA  235 (569)
T ss_pred             -----HhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCC-----CC-chHHhhHHHHHHHhhccchhhhHH
Confidence                 355667888999999988877543 443444443333322211     11 1334444444433211 1266665


Q ss_pred             HHHHHhcC---CCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHc
Q 008257          283 AVGLLAEL---PERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEH  359 (572)
Q Consensus       283 A~~~L~~L---~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~  359 (572)
                      |..+...+   .. .... +     -.+|.++.-+...+   -+       .+..++..|..++.    ....+-.....
T Consensus       236 a~~a~kai~~~~~-~~aV-K-----~llpsll~~l~~~k---Wr-------tK~aslellg~m~~----~ap~qLs~~lp  294 (569)
T KOG1242|consen  236 AVEAAKAIMRCLS-AYAV-K-----LLLPSLLGSLLEAK---WR-------TKMASLELLGAMAD----CAPKQLSLCLP  294 (569)
T ss_pred             HHHHHHHHHHhcC-cchh-h-----HhhhhhHHHHHHHh---hh-------hHHHHHHHHHHHHH----hchHHHHHHHh
Confidence            55543222   11 1111 1     12344444333211   01       14455666655552    23333445667


Q ss_pred             CchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhh
Q 008257          360 NLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCL  439 (572)
Q Consensus       360 g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l  439 (572)
                      .++|.+.+.|.+. .+++|+.+-.+|-.+..-..+..                                          |
T Consensus       295 ~iiP~lsevl~DT-~~evr~a~~~~l~~~~svidN~d------------------------------------------I  331 (569)
T KOG1242|consen  295 DLIPVLSEVLWDT-KPEVRKAGIETLLKFGSVIDNPD------------------------------------------I  331 (569)
T ss_pred             HhhHHHHHHHccC-CHHHHHHHHHHHHHHHHhhccHH------------------------------------------H
Confidence            8999999999998 99999999999987764322110                                          1


Q ss_pred             hhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHh---hcCCHHHHHHHHHHHHHH
Q 008257          440 LEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLL---EKRTENLQRRAVWVVERI  516 (572)
Q Consensus       440 ~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~---~~~~~~~~~~a~~~l~~l  516 (572)
                      ..  .+|.|++.+..++..+.+ ++..|+.=.   .     +. -+++-.+..++.+|+   ...+..+++.++.++.++
T Consensus       332 ~~--~ip~Lld~l~dp~~~~~e-~~~~L~~tt---F-----V~-~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm  399 (569)
T KOG1242|consen  332 QK--IIPTLLDALADPSCYTPE-CLDSLGATT---F-----VA-EVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNM  399 (569)
T ss_pred             HH--HHHHHHHHhcCcccchHH-HHHhhccee---e-----ee-eecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHH
Confidence            11  667888888876644433 233332111   0     00 112223333444442   255677889999999999


Q ss_pred             Hcchhhh---hhhcCCCCchHHHHHHhhcCCchhHHHHHHHHHhhcc
Q 008257          517 LRTDDIA---YEVSGDPNVSTALVDAFQHADYRTRQIAERALKHIDK  560 (572)
Q Consensus       517 ~~~~~~~---~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~~  560 (572)
                      +.--+..   ..|-.  .+.+.|-..+....|++|..|++||.-+-+
T Consensus       400 ~~LveDp~~lapfl~--~Llp~lk~~~~d~~PEvR~vaarAL~~l~e  444 (569)
T KOG1242|consen  400 CKLVEDPKDLAPFLP--SLLPGLKENLDDAVPEVRAVAARALGALLE  444 (569)
T ss_pred             HHhhcCHHHHhhhHH--HHhhHHHHHhcCCChhHHHHHHHHHHHHHH
Confidence            8542222   22222  222356666677889999999999954433

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=97.72  E-value=0.0039  Score=65.24  Aligned_cols=256  Identities=14%  Similarity=0.185  Sum_probs=152.0

Q ss_pred             HHHHHccCCHHHHHHHHHHHHHhccCcch---hHHHHhhhHHHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHH-HHHHc
Q 008257           41 LLTQILEGPQETKLSLAAFLGDLALNSDV---KVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAK-VLIHA  116 (572)
Q Consensus        41 Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~---k~~i~~~g~~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~-~iv~~  116 (572)
                      .+.+|++.++.+|+.||...+.++.--.+   .+.+.. -+-.|.+-|..+.+++.-.-++|+..+.+....+. +=--.
T Consensus       609 iL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~k-lg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~  687 (975)
T COG5181         609 ILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAK-LGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPIS  687 (975)
T ss_pred             HHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHH-HhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchh
Confidence            35678899999999999988877641111   122222 23678888999999987776666666665332221 11146


Q ss_pred             CChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHH
Q 008257          117 GILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVL  196 (572)
Q Consensus       117 G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL  196 (572)
                      |.+|.|...|++.+     ..++.+....++.++..++.+.                                       
T Consensus       688 ~ilP~ltPILrnkh-----~Kv~~nti~lvg~I~~~~peyi---------------------------------------  723 (975)
T COG5181         688 GILPSLTPILRNKH-----QKVVANTIALVGTICMNSPEYI---------------------------------------  723 (975)
T ss_pred             hccccccHhhhhhh-----HHHhhhHHHHHHHHHhcCcccC---------------------------------------
Confidence            89999999998765     5677777777777776543211                                       


Q ss_pred             HHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCC
Q 008257          197 VGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGI  276 (572)
Q Consensus       197 ~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~  276 (572)
                                 ..|+-|+   .---|+++|.+.+.++|++|...+.++++.-+..            ..|.-+|.+-.. 
T Consensus       724 -----------~~rEWMR---IcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPq------------dvL~~LlnnLkv-  776 (975)
T COG5181         724 -----------GVREWMR---ICFELVDSLKSWNKEIRRNATETFGCISRAIGPQ------------DVLDILLNNLKV-  776 (975)
T ss_pred             -----------CHHHHHH---HHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHH------------HHHHHHHhcchH-
Confidence                       1233333   2345788999999999999999999887553221            223333333221 


Q ss_pred             hH--HHHHHHHHHhcCCCCcHHHHHHHHh-CCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHH
Q 008257          277 SK--EQAAAVGLLAELPERDLGLTRQMLD-EGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAI  353 (572)
Q Consensus       277 ~~--~~~~A~~~L~~L~~~~~~~~~~l~~-~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~  353 (572)
                      ++  .+....-+|+           .+.+ +|-+..|-.++.+-.+       ....++.+.+.+++.+=..  .....+
T Consensus       777 qeRq~RvctsvaI~-----------iVae~cgpfsVlP~lm~dY~T-------Pe~nVQnGvLkam~fmFey--ig~~s~  836 (975)
T COG5181         777 QERQQRVCTSVAIS-----------IVAEYCGPFSVLPTLMSDYET-------PEANVQNGVLKAMCFMFEY--IGQASL  836 (975)
T ss_pred             HHHHhhhhhhhhhh-----------hhHhhcCchhhHHHHHhcccC-------chhHHHHhHHHHHHHHHHH--HHHHHH
Confidence            11  1211111111           1111 2445555555654221       2344567777777654311  012222


Q ss_pred             HHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhh
Q 008257          354 ALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLE  391 (572)
Q Consensus       354 ~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~  391 (572)
                      +.+  .-+.|.|-+-|.+. ++.-+..|+..+.+++.+
T Consensus       837 dYv--y~itPlleDAltDr-D~vhRqta~nvI~Hl~Ln  871 (975)
T COG5181         837 DYV--YSITPLLEDALTDR-DPVHRQTAMNVIRHLVLN  871 (975)
T ss_pred             HHH--HHhhHHHHhhhccc-chHHHHHHHHHHHHHhcC
Confidence            332  23568888888887 777788888888888753

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.67  E-value=0.0002  Score=57.38  Aligned_cols=87  Identities=25%  Similarity=0.315  Sum_probs=69.6

Q ss_pred             cHHHHHHH-ccCCHHHHHHHHHHHHHhccCcchhHHHHhhhHHHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHc
Q 008257           38 LQPLLTQI-LEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHA  116 (572)
Q Consensus        38 i~~Lv~~L-~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~  116 (572)
                      |+.|++.| +++++.+|..++.+|+.+...         ...|.|+++++++++.+|..|+++|..+-          ..
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~~   61 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELGDP---------EAIPALIELLKDEDPMVRRAAARALGRIG----------DP   61 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCTHH---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------HH
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcCCH---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------CH
Confidence            57899989 788899999999999843211         22499999999999999999999999873          34


Q ss_pred             CChHHHHHHHhccCCCCCCcchHHHHHHHHH
Q 008257          117 GILPPLVKDLFTVGSNHLPMRLKEVSATILA  147 (572)
Q Consensus       117 G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~  147 (572)
                      .+++.|.+++.+.    .+..+|..|+.+|+
T Consensus        62 ~~~~~L~~~l~~~----~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   62 EAIPALIKLLQDD----DDEVVREAAAEALG   88 (88)
T ss_dssp             HTHHHHHHHHTC-----SSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCC----CcHHHHHHHHhhcC
Confidence            4899999999763    23667888888875

>PF05536 Neurochondrin: Neurochondrin

Probab=97.62  E-value=0.0071  Score=65.47  Aligned_cols=202  Identities=10%  Similarity=0.049  Sum_probs=138.2

Q ss_pred             hhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCC-------CHHHHHHHHHHHHHc
Q 008257          172 DIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAP-------QNDLRLASIELIQNL  244 (572)
Q Consensus       172 ~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~-------~~~v~~~a~~~L~~L  244 (572)
                      ..+...+++|+..+++-+.-++-.+-.++...+.....++.+.++=|...|-+||+.+       ....+.-|+.+|..+
T Consensus         5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f   84 (543)
T PF05536_consen    5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF   84 (543)
T ss_pred             HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            3577888999988866666777777788776543334556788898999999999873       346788899999999


Q ss_pred             CCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCC
Q 008257          245 SPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRG  324 (572)
Q Consensus       245 s~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~  324 (572)
                      +..+.-.....+.   +.||.|++++.+.++ ......+..+|..++. .++-.+.+++.|+++.|...+.+.       
T Consensus        85 ~~~~~~a~~~~~~---~~IP~Lle~l~~~s~-~~~v~dalqcL~~Ias-~~~G~~aLl~~g~v~~L~ei~~~~-------  152 (543)
T PF05536_consen   85 CRDPELASSPQMV---SRIPLLLEILSSSSD-LETVDDALQCLLAIAS-SPEGAKALLESGAVPALCEIIPNQ-------  152 (543)
T ss_pred             cCChhhhcCHHHH---HHHHHHHHHHHcCCc-hhHHHHHHHHHHHHHc-CcHhHHHHHhcCCHHHHHHHHHhC-------
Confidence            9742111112344   469999999988875 3677888999999996 556668999999999999999862       


Q ss_pred             CcchhhHHHHHHHHHHHHhccCCCChHHHH-H-HHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhc
Q 008257          325 SRFVTPFLEGLLSVLARVTFVLSDEPDAIA-L-CCEHNLAALFIELLQSNGLDKVQMVSATALENLSLES  392 (572)
Q Consensus       325 ~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~-~-i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~  392 (572)
                          ...+|.++.+|.++...  ...+... . -.-..+++.+-...... ....|.....-|..+-...
T Consensus       153 ----~~~~E~Al~lL~~Lls~--~~~~~~~~~~~~l~~il~~La~~fs~~-~~~~kfell~~L~~~L~~~  215 (543)
T PF05536_consen  153 ----SFQMEIALNLLLNLLSR--LGQKSWAEDSQLLHSILPSLARDFSSF-HGEDKFELLEFLSAFLPRS  215 (543)
T ss_pred             ----cchHHHHHHHHHHHHHh--cchhhhhhhHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHhcCcC
Confidence                22378888888887743  1211110 0 00113345555555554 4556667777777765444

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.60  E-value=0.071  Score=57.83  Aligned_cols=208  Identities=13%  Similarity=0.138  Sum_probs=121.8

Q ss_pred             HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCc
Q 008257           79 SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDS  158 (572)
Q Consensus        79 ~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~  158 (572)
                      .-|..||+|.....+..|.+-+..+-....+..     ...|..|+...+.+     .++|...---|..-|..   .+.
T Consensus        38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~dvS-----~~Fp~VVKNVaskn-----~EVKkLVyvYLlrYAEe---qpd  104 (968)
T KOG1060|consen   38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKDVS-----LLFPAVVKNVASKN-----IEVKKLVYVYLLRYAEE---QPD  104 (968)
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHhcCCcHH-----HHHHHHHHHhhccC-----HHHHHHHHHHHHHHhhc---CCC
Confidence            678999999887777777766666555555432     34677777776542     67776443333333332   222


Q ss_pred             cccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHH
Q 008257          159 ITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASI  238 (572)
Q Consensus       159 ~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~  238 (572)
                      ..       +   -.|..+-+-|+.+++.++..|+|+|..+--..          +-.-.+-.+-+......+.||..|+
T Consensus       105 LA-------L---LSIntfQk~L~DpN~LiRasALRvlSsIRvp~----------IaPI~llAIk~~~~D~s~yVRk~AA  164 (968)
T KOG1060|consen  105 LA-------L---LSINTFQKALKDPNQLIRASALRVLSSIRVPM----------IAPIMLLAIKKAVTDPSPYVRKTAA  164 (968)
T ss_pred             ce-------e---eeHHHHHhhhcCCcHHHHHHHHHHHHhcchhh----------HHHHHHHHHHHHhcCCcHHHHHHHH
Confidence            11       1   13777888888999999999999887663221          1000111222344566789999999


Q ss_pred             HHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhc
Q 008257          239 ELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQ  318 (572)
Q Consensus       239 ~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~  318 (572)
                      -++-.|=+-+.++- .++.      ..+-.+|...++  .+--.|+.+...++-   +.-+.+.  +-...|.++|.+  
T Consensus       165 ~AIpKLYsLd~e~k-~qL~------e~I~~LLaD~sp--lVvgsAv~AF~evCP---erldLIH--knyrklC~ll~d--  228 (968)
T KOG1060|consen  165 HAIPKLYSLDPEQK-DQLE------EVIKKLLADRSP--LVVGSAVMAFEEVCP---ERLDLIH--KNYRKLCRLLPD--  228 (968)
T ss_pred             HhhHHHhcCChhhH-HHHH------HHHHHHhcCCCC--cchhHHHHHHHHhch---hHHHHhh--HHHHHHHhhccc--
Confidence            99887754433332 1222      223333444443  566667777766643   2223332  446677777765  


Q ss_pred             cCCCCCCcchhhHHHHHHHHHHHHh
Q 008257          319 LGETRGSRFVTPFLEGLLSVLARVT  343 (572)
Q Consensus       319 ~~~~~~~~~~~~~~e~a~~aL~~l~  343 (572)
                              .++|-+-.++..|.+.+
T Consensus       229 --------vdeWgQvvlI~mL~RYA  245 (968)
T KOG1060|consen  229 --------VDEWGQVVLINMLTRYA  245 (968)
T ss_pred             --------hhhhhHHHHHHHHHHHH
Confidence                    34565666777777665

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.55  E-value=0.015  Score=56.22  Aligned_cols=297  Identities=18%  Similarity=0.167  Sum_probs=175.3

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHH
Q 008257          174 VHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELA  253 (572)
Q Consensus       174 i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~  253 (572)
                      ...+++++.+.+|.++..|+.-+.+++..+.  ....  -.+...++.+..|+...++  -+.|+.+|.|++..  ..++
T Consensus         5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~~~--~~~~--~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~--~~l~   76 (353)
T KOG2973|consen    5 LVELVELLHSLSPPVRKAAVEHLLGLTGRGL--QSLS--KYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK--EELR   76 (353)
T ss_pred             HHHHHHHhccCChHHHHHHHHHHhhccccch--hhhc--cchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh--HHHH
Confidence            3457889999999999999999999887621  0111  0134467788889877766  66788899999865  2455


Q ss_pred             HHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhC-----CChHHHHHHHhhhccCCCCCCcch
Q 008257          254 DALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDE-----GAFGLIFSRVKSIQLGETRGSRFV  328 (572)
Q Consensus       254 ~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~-----g~l~~Lv~lL~~~~~~~~~~~~~~  328 (572)
                      +.+...  .+..++.++.++..  ..-.....+++|++..+......+..-     .++..++....+...       +.
T Consensus        77 ~~ll~~--~~k~l~~~~~~p~~--~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~-------n~  145 (353)
T KOG2973|consen   77 KKLLQD--LLKVLMDMLTDPQS--PLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSY-------NA  145 (353)
T ss_pred             HHHHHH--HHHHHHHHhcCccc--chHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCccc-------cc
Confidence            555543  67788888888864  556667788999999665554333211     345555544433211       10


Q ss_pred             hhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHH--HHHHhccCCcHHHH-HHHHHHHHHhhhhccccCCCCCCCCCC
Q 008257          329 TPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAAL--FIELLQSNGLDKVQ-MVSATALENLSLESKNLTKLPELPPSG  405 (572)
Q Consensus       329 ~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~--Lv~lL~~~~~~~vk-~~Aa~aL~~ls~~~~~~~~~~~~~~~~  405 (572)
                      -.-....+-.+.+++.    .+.-|+.+.+...+|.  |..+ .+. +..+| .-.+..|.|.+.....+...... .  
T Consensus       146 ~a~f~ylA~vf~nls~----~~~gR~l~~~~k~~p~~kll~f-t~~-~s~vRr~GvagtlkN~cFd~~~h~~lL~e-~--  216 (353)
T KOG2973|consen  146 YAEFHYLAPVFANLSQ----FEAGRKLLLEPKRFPDQKLLPF-TSE-DSQVRRGGVAGTLKNCCFDAKLHEVLLDE-S--  216 (353)
T ss_pred             ccchhHHHHHHHHHhh----hhhhhhHhcchhhhhHhhhhcc-ccc-chhhhccchHHHHHhhhccchhHHHHhcc-h--
Confidence            1114567777778873    5667777766664443  2222 223 44444 45666788877666554433221 1  


Q ss_pred             CCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhc-----CCCHhHHHHHHHHHHHhhhcCccchhh
Q 008257          406 FCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLD-----HTNEKVVEASLAALSTVIDDGVDIEQG  480 (572)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~-----~~~~~v~~~A~~aL~~l~~~~~~~~~~  480 (572)
                        .++|+-+            ..-+++.+ .|-=-+.-..|+=+++|.     .+++.+...-+.+|.-|+...    .+
T Consensus       217 --~~lLp~i------------LlPlagpe-e~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~----~G  277 (353)
T KOG2973|consen  217 --INLLPAI------------LLPLAGPE-ELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATR----AG  277 (353)
T ss_pred             --HHHHHHH------------HhhcCCcc-ccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhh----Hh
Confidence              1112111            11111111 110012235566668885     578899999999999998753    56


Q ss_pred             HHHHHhcCChHHHHHHH-hhcCCHHHHHHHHHHHHHHHc
Q 008257          481 VMVLCEAQGIKPILDVL-LEKRTENLQRRAVWVVERILR  518 (572)
Q Consensus       481 ~~~i~~~g~i~~L~~lL-~~~~~~~~~~~a~~~l~~l~~  518 (572)
                      .+.+-+- |+.++++-+ ++..++++.+..-.+..-+.+
T Consensus       278 Re~lR~k-gvYpilRElhk~e~ded~~~ace~vvq~Lv~  315 (353)
T KOG2973|consen  278 REVLRSK-GVYPILRELHKWEEDEDIREACEQVVQMLVR  315 (353)
T ss_pred             HHHHHhc-CchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence            6666555 555555555 334467777665555554443

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.54  E-value=0.0056  Score=64.76  Aligned_cols=243  Identities=18%  Similarity=0.130  Sum_probs=159.9

Q ss_pred             CCCCCCHHHHHHHHHHHHhhcc-CcchHHHHHHcCCcHHHHHHHccC-----CHHHHHHHHHHHHHhcc-CcchhHHHHh
Q 008257            3 SSKSENLLTVEKAEKTLANLEK-CENNVRQMAENGRLQPLLTQILEG-----PQETKLSLAAFLGDLAL-NSDVKVLVAR   75 (572)
Q Consensus         3 ~~~s~~~~~~~~A~~~L~~L~~-~~~n~~~i~~~g~i~~Lv~~L~~~-----~~~~~~~aa~~L~~l~~-~~~~k~~i~~   75 (572)
                      +..+.++.+...|.++|+|+-. ++..+..+++.|+.+.++.+|+..     +.+.+....+.|.-+.. ..+.+..+.+
T Consensus        40 ~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~  119 (446)
T PF10165_consen   40 EFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIE  119 (446)
T ss_pred             cccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHH
Confidence            3567888999999999999987 677788899999999999999987     78888888888776544 5566655554


Q ss_pred             h-hH-HHHHHhccc-----------------CCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhcc---C-CC
Q 008257           76 T-VG-SCLINIMKS-----------------GNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTV---G-SN  132 (572)
Q Consensus        76 ~-g~-~~Lv~lL~s-----------------~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~---~-~~  132 (572)
                      . ++ ..|+..|..                 .+.+....+++.+.|+..+.+....--+.+.++.|+.+|..-   . .+
T Consensus       120 e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~  199 (446)
T PF10165_consen  120 EHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSS  199 (446)
T ss_pred             HhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCC
Confidence            4 44 777765521                 133446789999999997654432224667788888876533   1 12


Q ss_pred             CCCcchHHHHHHHHHHHHhcCCCC---CccccCCCccccchhhhHHHHHHHHhc-----CC---hhHHHHHHHHHHHccC
Q 008257          133 HLPMRLKEVSATILANVVNSGHDF---DSITVGPDNQTLVSEDIVHNLLHLISN-----TG---PTIECKLLQVLVGLTS  201 (572)
Q Consensus       133 ~~~~~~~~~aa~~L~nla~~~~~~---~~~~~~~~~~~l~~~~~i~~Lv~lL~~-----~~---~~~q~~a~~aL~~l~~  201 (572)
                      .........+..+|.|+--.....   .....+..........++..|+.+|..     ..   .+.-...+.+|..++.
T Consensus       200 ~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~  279 (446)
T PF10165_consen  200 PPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLAR  279 (446)
T ss_pred             CcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHH
Confidence            233567788888888882111000   000000000012334578888888862     11   1333455667777776


Q ss_pred             CCCccHHHHHHHHh---------------cCChH-HHHHHhcCCCHHHHHHHHHHHHHcCCCC
Q 008257          202 SPTTVLSVVSAIKS---------------SGATI-SLVQFVEAPQNDLRLASIELIQNLSPHM  248 (572)
Q Consensus       202 ~~~~~~~~~~~i~~---------------~g~i~-~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~  248 (572)
                      ..   +.+|+.++.               .+.++ .|++++.+..+.++..+...|+.||+.+
T Consensus       280 ~~---~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d  339 (446)
T PF10165_consen  280 AA---REVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKED  339 (446)
T ss_pred             hc---HHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhh
Confidence            54   245666553               23333 8999999988999999999999998664

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.53  E-value=0.023  Score=55.07  Aligned_cols=277  Identities=14%  Similarity=0.145  Sum_probs=161.1

Q ss_pred             HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHH-HcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCC
Q 008257           79 SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLI-HAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFD  157 (572)
Q Consensus        79 ~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv-~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~  157 (572)
                      --+|++|.+.+|.+|..|+.-|..++.. ..+.... +.-.++.+.+++....     +  -+.|+.+|.|++....- .
T Consensus         6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~-----~--~~~a~~alVnlsq~~~l-~   76 (353)
T KOG2973|consen    6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLD-----P--AEPAATALVNLSQKEEL-R   76 (353)
T ss_pred             HHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCcc-----c--ccHHHHHHHHHHhhHHH-H
Confidence            3578899999999999999999998876 3332222 4556788888886531     2  56899999999874310 0


Q ss_pred             ccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHH--h---cCChHHHHH-HhcCCCH
Q 008257          158 SITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIK--S---SGATISLVQ-FVEAPQN  231 (572)
Q Consensus       158 ~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~--~---~g~i~~Lv~-lL~~~~~  231 (572)
                              +.+... .+..++.++.++-...-.-.+..|.|+++....   +...+.  .   ..++.-|+. +++.+..
T Consensus        77 --------~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~---~~~ll~~~~~~~~~~lm~l~~~~~d~~~n  144 (353)
T KOG2973|consen   77 --------KKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDE---VAALLTNLTEKKDSGLMRLARAFCDKSYN  144 (353)
T ss_pred             --------HHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchH---HHHHHHhcccccccchHHHHHHHhCcccc
Confidence                    122222 566666776666566667778888899887643   222211  1   134444444 4443322


Q ss_pred             --HHHHHHHHHHHHcCCCC-ChhHHHHHhcccCC-hhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhC--C
Q 008257          232 --DLRLASIELIQNLSPHM-GHELADALRGAVGQ-LGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDE--G  305 (572)
Q Consensus       232 --~v~~~a~~~L~~Ls~~~-~~~~~~~i~~~~g~-l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~--g  305 (572)
                        .--.+-+-.+.+|++.. ++.   .+....-. ...|+.+ .+.++ .--+.-.+++|.|++.. ..+...+.+.  +
T Consensus       145 ~~a~f~ylA~vf~nls~~~~gR~---l~~~~k~~p~~kll~f-t~~~s-~vRr~GvagtlkN~cFd-~~~h~~lL~e~~~  218 (353)
T KOG2973|consen  145 AYAEFHYLAPVFANLSQFEAGRK---LLLEPKRFPDQKLLPF-TSEDS-QVRRGGVAGTLKNCCFD-AKLHEVLLDESIN  218 (353)
T ss_pred             cccchhHHHHHHHHHhhhhhhhh---HhcchhhhhHhhhhcc-cccch-hhhccchHHHHHhhhcc-chhHHHHhcchHH
Confidence              22345566788888542 222   22222011 2233333 33332 23455678899999984 4444556553  3


Q ss_pred             ChHHHHHHHhhhccCC----------------CCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHh
Q 008257          306 AFGLIFSRVKSIQLGE----------------TRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELL  369 (572)
Q Consensus       306 ~l~~Lv~lL~~~~~~~----------------~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL  369 (572)
                      .+|.|+-=|.+.+.-+                .+...+++.++...+.+|..++.    ...-|+.+++.|+.|.+-++=
T Consensus       219 lLp~iLlPlagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLca----T~~GRe~lR~kgvYpilRElh  294 (353)
T KOG2973|consen  219 LLPAILLPLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCA----TRAGREVLRSKGVYPILRELH  294 (353)
T ss_pred             HHHHHHhhcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHh----hhHhHHHHHhcCchHHHHHHh
Confidence            4555544443322100                01122467788889999999984    577789999999977765554


Q ss_pred             ccCCcHHHHHHHHHHHHH
Q 008257          370 QSNGLDKVQMVSATALEN  387 (572)
Q Consensus       370 ~~~~~~~vk~~Aa~aL~~  387 (572)
                      +...++++. .++.-+.+
T Consensus       295 k~e~ded~~-~ace~vvq  311 (353)
T KOG2973|consen  295 KWEEDEDIR-EACEQVVQ  311 (353)
T ss_pred             cCCCcHHHH-HHHHHHHH
Confidence            444344444 34443433

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.49  E-value=0.00026  Score=47.55  Aligned_cols=39  Identities=28%  Similarity=0.262  Sum_probs=35.4

Q ss_pred             hHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhh
Q 008257          350 PDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLS  389 (572)
Q Consensus       350 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls  389 (572)
                      ++.++.+++.|++|+|+++|.++ ++.+++.++++|.|++
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~-~~~i~~~a~~aL~nl~   40 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSE-DEEVVKEAAWALSNLS   40 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHc
Confidence            34777899999999999999987 9999999999999986

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=97.48  E-value=0.036  Score=56.99  Aligned_cols=333  Identities=17%  Similarity=0.134  Sum_probs=194.1

Q ss_pred             HHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhH-HHHHHhcccC--CHHHHHH
Q 008257           19 LANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVG-SCLINIMKSG--NMQAREA   95 (572)
Q Consensus        19 L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~Lv~lL~s~--~~~~~~~   95 (572)
                      ..-+...+.-+..+.-.-..+.+..++-+.+.+++..+-..+..+..+.+.-..+.+..+ -.++.-|..+  +...++.
T Consensus         8 v~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~Q   87 (371)
T PF14664_consen    8 VDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQ   87 (371)
T ss_pred             HHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHH
Confidence            333344555555554444555555555555577777777777766677777777777788 6667777653  4567899


Q ss_pred             HHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHH
Q 008257           96 ALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVH  175 (572)
Q Consensus        96 A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~  175 (572)
                      |++.++.+...+...+. +-.|.+..++.+....     +..++..|.++|+.++-.++           ..+...|++.
T Consensus        88 ALkliR~~l~~~~~~~~-~~~~vvralvaiae~~-----~D~lr~~cletL~El~l~~P-----------~lv~~~gG~~  150 (371)
T PF14664_consen   88 ALKLIRAFLEIKKGPKE-IPRGVVRALVAIAEHE-----DDRLRRICLETLCELALLNP-----------ELVAECGGIR  150 (371)
T ss_pred             HHHHHHHHHHhcCCccc-CCHHHHHHHHHHHhCC-----chHHHHHHHHHHHHHHhhCH-----------HHHHHcCCHH
Confidence            99999999876444333 3668889999988764     26799999999999987653           2456678899


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHh-cC------CCH--HHHHHHHHHHHHcC-
Q 008257          176 NLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFV-EA------PQN--DLRLASIELIQNLS-  245 (572)
Q Consensus       176 ~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL-~~------~~~--~v~~~a~~~L~~Ls-  245 (572)
                      .|++.+-.+..++.+..+.++..+-..+..    |+.++-.--+..++.-+ +.      ++.  +.-..+..++..+- 
T Consensus       151 ~L~~~l~d~~~~~~~~l~~~lL~lLd~p~t----R~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~Lr  226 (371)
T PF14664_consen  151 VLLRALIDGSFSISESLLDTLLYLLDSPRT----RKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLR  226 (371)
T ss_pred             HHHHHHHhccHhHHHHHHHHHHHHhCCcch----hhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHh
Confidence            999999887777888999999999888754    44444333344443322 22      112  12333344444433 


Q ss_pred             CCCChhHHHHHhcc-cCChhhHHhhhccCCCChHHHHHHHHHHhcCCC-CcHH------HHHHHHhCCChHHHHHHHhhh
Q 008257          246 PHMGHELADALRGA-VGQLGSLIRVISENVGISKEQAAAVGLLAELPE-RDLG------LTRQMLDEGAFGLIFSRVKSI  317 (572)
Q Consensus       246 ~~~~~~~~~~i~~~-~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~-~~~~------~~~~l~~~g~l~~Lv~lL~~~  317 (572)
                      ...| -+  .+... ..++..||..|..++.  +++...+.++..+-. ..+.      ..+.+...|-+..-.++....
T Consensus       227 sW~G-Ll--~l~~~~~~~lksLv~~L~~p~~--~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~  301 (371)
T PF14664_consen  227 SWPG-LL--YLSMNDFRGLKSLVDSLRLPNP--EIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGF  301 (371)
T ss_pred             cCCc-ee--eeecCCchHHHHHHHHHcCCCH--HHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccc
Confidence            2221 10  11111 0468888888888875  677766666554321 0111      111112222210001111000


Q ss_pred             ccCC-CCCC--cchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhh
Q 008257          318 QLGE-TRGS--RFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSL  390 (572)
Q Consensus       318 ~~~~-~~~~--~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~  390 (572)
                      ..+. ..+.  .....+.++=.+             -....+.+.|.++.|+++..+..++.+.+.|..-|+.+-.
T Consensus       302 ~e~~~~~~~~~~~~~~l~~~y~a-------------Lll~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL~  364 (371)
T PF14664_consen  302 AEAKSILPHRSSKRPNLVNHYLA-------------LLLAILIEAGLLEALVELIESSEDSSLSRKATLLLGELLH  364 (371)
T ss_pred             cccccccCccccccccHHHHHHH-------------HHHHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence            0000 0000  000111111111             1223478999999999999987577888888888877643

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.46  E-value=0.016  Score=62.76  Aligned_cols=178  Identities=12%  Similarity=0.157  Sum_probs=113.1

Q ss_pred             HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCc
Q 008257           79 SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDS  158 (572)
Q Consensus        79 ~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~  158 (572)
                      .+|.+.++++++.+|..|+-++.++-  +.+.+...+.|.++.|.++++..     ++.+..+|..+|..+...+.+.. 
T Consensus       124 ~Pl~~~l~d~~~yvRktaa~~vakl~--~~~~~~~~~~gl~~~L~~ll~D~-----~p~VVAnAlaaL~eI~e~~~~~~-  195 (734)
T KOG1061|consen  124 DPLLKCLKDDDPYVRKTAAVCVAKLF--DIDPDLVEDSGLVDALKDLLSDS-----NPMVVANALAALSEIHESHPSVN-  195 (734)
T ss_pred             HHHHHhccCCChhHHHHHHHHHHHhh--cCChhhccccchhHHHHHHhcCC-----CchHHHHHHHHHHHHHHhCCCCC-
Confidence            79999999999999999999888864  44456667899999999999842     37889999999999987654311 


Q ss_pred             cccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHH
Q 008257          159 ITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASI  238 (572)
Q Consensus       159 ~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~  238 (572)
                             ........+..++.-+..-..--|.-.+.+|..-.-..+  .+.      ...+..+...|.+.+..+...+.
T Consensus       196 -------~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~--~ea------~~i~~r~~p~Lqh~n~avvlsav  260 (734)
T KOG1061|consen  196 -------LLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDS--REA------EDICERLTPRLQHANSAVVLSAV  260 (734)
T ss_pred             -------cccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCc--hhH------HHHHHHhhhhhccCCcceEeehH
Confidence                   112223345555555543222233344444443332222  122      12355666777787878888888


Q ss_pred             HHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHH
Q 008257          239 ELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVG  285 (572)
Q Consensus       239 ~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~  285 (572)
                      +.+.++...... +.+.+.+  ..-++|+-+++++.   +.+..|+.
T Consensus       261 Kv~l~~~~~~~~-~~~~~~~--K~~~pl~tlls~~~---e~qyvaLr  301 (734)
T KOG1061|consen  261 KVILQLVKYLKQ-VNELLFK--KVAPPLVTLLSSES---EIQYVALR  301 (734)
T ss_pred             HHHHHHHHHHHH-HHHHHHH--Hhcccceeeecccc---hhhHHHHh
Confidence            888777754333 2233333  24577888888776   34444433

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.43  E-value=0.0038  Score=69.11  Aligned_cols=204  Identities=17%  Similarity=0.194  Sum_probs=145.7

Q ss_pred             CChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHH
Q 008257          261 GQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLA  340 (572)
Q Consensus       261 g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~  340 (572)
                      |+.|-.++||+++..  +++-.-+.+=..+-.-|+.++..++++++-.++++.|...+  .     ...+-+..++-.|.
T Consensus       512 GIFPYVLKLLQS~a~--ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~--~-----~~~EqrtmaAFVLA  582 (1387)
T KOG1517|consen  512 GIFPYVLKLLQSSAR--ELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQ--A-----IPPEQRTMAAFVLA  582 (1387)
T ss_pred             chHHHHHHHhccchH--hhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcC--C-----CCHHHHHHHHHHHH
Confidence            999999999999985  77766666655655558888888999999999999987621  1     12234556888888


Q ss_pred             HHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCcc
Q 008257          341 RVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVI  420 (572)
Q Consensus       341 ~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (572)
                      .++.+   -+.-|+.+.+.+.+..=.+.|+++..+..+.=.+.+|+.|=.+-.                           
T Consensus       583 viv~n---f~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~---------------------------  632 (1387)
T KOG1517|consen  583 VIVRN---FKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYD---------------------------  632 (1387)
T ss_pred             HHHcc---cchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcc---------------------------
Confidence            88864   677788899999999888999985357888888888876632110                           


Q ss_pred             ccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCcc-chhhHHHH-----------HhcC
Q 008257          421 TGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVD-IEQGVMVL-----------CEAQ  488 (572)
Q Consensus       421 ~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~-~~~~~~~i-----------~~~g  488 (572)
                                   +..++-++.++.+.|..+|+.+-++|+.+|+.||+++...+.+ +.++...+           .-..
T Consensus       633 -------------~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~  699 (1387)
T KOG1517|consen  633 -------------EARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIED  699 (1387)
T ss_pred             -------------hhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHH
Confidence                         1122234778999999999999999999999999999975311 11111111           0111


Q ss_pred             Ch----HHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 008257          489 GI----KPILDVLLEKRTENLQRRAVWVVERIL  517 (572)
Q Consensus       489 ~i----~~L~~lL~~~~~~~~~~~a~~~l~~l~  517 (572)
                      -|    -.++.++ ..+++-++...+.+|..+.
T Consensus       700 ~i~~~~~~ll~~v-sdgsplvr~ev~v~ls~~~  731 (1387)
T KOG1517|consen  700 LIIKGLMSLLALV-SDGSPLVRTEVVVALSHFV  731 (1387)
T ss_pred             HHHhhHHHHHHHH-hccchHHHHHHHHHHHHHH
Confidence            22    2566777 4888888877777776554

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=97.38  E-value=0.056  Score=59.73  Aligned_cols=247  Identities=14%  Similarity=0.125  Sum_probs=131.2

Q ss_pred             HHHHHHHHHHhhccCcchHHHH-HHcCCcHHHHHHHccCCHHHHHHHHHHHHHhcc--CcchhHHHHhhhHHHHHHhccc
Q 008257           11 TVEKAEKTLANLEKCENNVRQM-AENGRLQPLLTQILEGPQETKLSLAAFLGDLAL--NSDVKVLVARTVGSCLINIMKS   87 (572)
Q Consensus        11 ~~~~A~~~L~~L~~~~~n~~~i-~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~--~~~~k~~i~~~g~~~Lv~lL~s   87 (572)
                      ++-.|.+++...+.++-.+... .-..+++.+...+.......+.....++-.+..  .+.......+.....+-.+++.
T Consensus       625 TRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lise  704 (1233)
T KOG1824|consen  625 TRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISE  704 (1233)
T ss_pred             HHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhH
Confidence            3444555555554433222211 111234455555554444444444444444332  1111122222212344455555


Q ss_pred             CCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccc
Q 008257           88 GNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQT  167 (572)
Q Consensus        88 ~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~  167 (572)
                      .+..+-..|+..|.-++...+....-+..-.++.++.+++|       +-++-.|..++.++-..-      ...+    
T Consensus       705 sdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~S-------pllqg~al~~~l~~f~al------V~t~----  767 (1233)
T KOG1824|consen  705 SDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRS-------PLLQGGALSALLLFFQAL------VITK----  767 (1233)
T ss_pred             HHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhC-------ccccchHHHHHHHHHHHH------HhcC----
Confidence            66778889999999999888877777788899999999987       456666666666553210      0000    


Q ss_pred             cchhhhHHHHHHHHhcCChhHH-----HHHH-------HHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCC--CHHH
Q 008257          168 LVSEDIVHNLLHLISNTGPTIE-----CKLL-------QVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAP--QNDL  233 (572)
Q Consensus       168 l~~~~~i~~Lv~lL~~~~~~~q-----~~a~-------~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~v  233 (572)
                      ...-+ ...++.++..+.++.+     .+|.       .+|...|....     +      .....|+.-+.++  +..+
T Consensus       768 ~~~l~-y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s-----~------s~a~kl~~~~~s~~s~~~i  835 (1233)
T KOG1824|consen  768 EPDLD-YISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKS-----K------SLATKLIQDLQSPKSSDSI  835 (1233)
T ss_pred             CCCcc-HHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccc-----h------hHHHHHHHHHhCCCCchhH
Confidence            01112 5667777775443322     2222       22222222111     1      1223344444433  3466


Q ss_pred             HHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCc
Q 008257          234 RLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERD  294 (572)
Q Consensus       234 ~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~  294 (572)
                      |.-|.-.|..+-++.+..-+     . +.-..+++-+.+++.  +++.+|.-+|++++.++
T Consensus       836 kvfa~LslGElgr~~~~s~~-----~-e~~~~iieaf~sp~e--dvksAAs~ALGsl~vgn  888 (1233)
T KOG1824|consen  836 KVFALLSLGELGRRKDLSPQ-----N-ELKDTIIEAFNSPSE--DVKSAASYALGSLAVGN  888 (1233)
T ss_pred             HHHHHhhhhhhccCCCCCcc-----h-hhHHHHHHHcCCChH--HHHHHHHHHhhhhhcCc
Confidence            77777777777655321110     0 233467788888885  99999999999998754

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.37  E-value=0.00043  Score=46.44  Aligned_cols=37  Identities=19%  Similarity=0.285  Sum_probs=34.5

Q ss_pred             HHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 008257          209 VVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLS  245 (572)
Q Consensus       209 ~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls  245 (572)
                      .+..+.+.|+++.|++++.+++++++..++++|+||+
T Consensus         4 ~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        4 QKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            5678889999999999999989999999999999987

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.35  E-value=0.0017  Score=62.33  Aligned_cols=185  Identities=16%  Similarity=0.125  Sum_probs=115.4

Q ss_pred             ccCCHHHHHHHHHHHHHhccCc---chhHHHHhh--hH-HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCCh
Q 008257           46 LEGPQETKLSLAAFLGDLALNS---DVKVLVART--VG-SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGIL  119 (572)
Q Consensus        46 ~~~~~~~~~~aa~~L~~l~~~~---~~k~~i~~~--g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i  119 (572)
                      .+.+.+.|.++...|..+....   .....+.+.  .+ ..++..+++....+...|+.++..|+..-...-.-.-...+
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l   96 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL   96 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence            5678889999999998887633   333333322  33 67788888777788899999999999754333222244578


Q ss_pred             HHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhh-HHHHHHHHhcCChhHHHHHHHHHHH
Q 008257          120 PPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDI-VHNLLHLISNTGPTIECKLLQVLVG  198 (572)
Q Consensus       120 ~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~-i~~Lv~lL~~~~~~~q~~a~~aL~~  198 (572)
                      |+|++.+.++.     ..+++.|..+|..++.+...              ...+ ++.+...+.+.++.++..++..|..
T Consensus        97 ~~Ll~~~~~~~-----~~i~~~a~~~L~~i~~~~~~--------------~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~  157 (228)
T PF12348_consen   97 PPLLKKLGDSK-----KFIREAANNALDAIIESCSY--------------SPKILLEILSQGLKSKNPQVREECAEWLAI  157 (228)
T ss_dssp             HHHHHGGG--------HHHHHHHHHHHHHHHTTS-H----------------HHHHHHHHHHTT-S-HHHHHHHHHHHHH
T ss_pred             HHHHHHHcccc-----HHHHHHHHHHHHHHHHHCCc--------------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            88998887643     78999999999999875320              1223 5666677788999999999988887


Q ss_pred             ccCCCC-ccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC
Q 008257          199 LTSSPT-TVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMG  249 (572)
Q Consensus       199 l~~~~~-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~  249 (572)
                      +..... ..........-...++.+..++.+.++++|..|-.++..+..+.+
T Consensus       158 ~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~  209 (228)
T PF12348_consen  158 ILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFP  209 (228)
T ss_dssp             HHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence            755432 111111111113367788889999999999999999998865533

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=97.32  E-value=0.14  Score=56.77  Aligned_cols=429  Identities=15%  Similarity=0.131  Sum_probs=233.8

Q ss_pred             CCHHHHHHHHHHHHhhccC--cchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccCc--chhHHHHhhhHHHHH
Q 008257            7 ENLLTVEKAEKTLANLEKC--ENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNS--DVKVLVARTVGSCLI   82 (572)
Q Consensus         7 ~~~~~~~~A~~~L~~L~~~--~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~--~~k~~i~~~g~~~Lv   82 (572)
                      .|.++.++|..+...+-.+  |.-...+  ...++.|+++|+  ++-.|.-|+.+|..++...  -....+.....+.|.
T Consensus       582 ~DqeVkeraIscmgq~i~~fgD~l~~eL--~~~L~il~eRl~--nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~  657 (1233)
T KOG1824|consen  582 SDQEVKERAISCMGQIIANFGDFLGNEL--PRTLPILLERLG--NEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELA  657 (1233)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhhhhhhhh--HHHHHHHHHHHh--chhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHH
Confidence            4556666666555544321  1111111  234566666664  4456778889999887632  333444444559999


Q ss_pred             HhcccCCHHHHHHHHHHHHHhhcCC--CcHHHHHH--cCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCc
Q 008257           83 NIMKSGNMQAREAALKALNQISSCE--PSAKVLIH--AGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDS  158 (572)
Q Consensus        83 ~lL~s~~~~~~~~A~~aL~~Ls~~~--~~~~~iv~--~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~  158 (572)
                      ..|+......+...+.++..|..+.  .....+++  -+=+|+|+   +..     +..+.+.|...|..++....... 
T Consensus       658 ~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Li---ses-----dlhvt~~a~~~L~tl~~~~ps~l-  728 (1233)
T KOG1824|consen  658 SFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLI---SES-----DLHVTQLAVAFLTTLAIIQPSSL-  728 (1233)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhh---hHH-----HHHHHHHHHHHHHHHHhcccHHH-
Confidence            9998776677788888888777542  11222222  22334433   332     26778889999999886543211 


Q ss_pred             cccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHH--hc--CChHHHHHHhcCCCHH--
Q 008257          159 ITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIK--SS--GATISLVQFVEAPQND--  232 (572)
Q Consensus       159 ~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~--~~--g~i~~Lv~lL~~~~~~--  232 (572)
                              .-....+++.+++++++  |-+|-.++.++..+          +.+++  ..  -....|+.++..+-.+  
T Consensus       729 --------~~~~~~iL~~ii~ll~S--pllqg~al~~~l~~----------f~alV~t~~~~l~y~~l~s~lt~PV~~~~  788 (1233)
T KOG1824|consen  729 --------LKISNPILDEIIRLLRS--PLLQGGALSALLLF----------FQALVITKEPDLDYISLLSLLTAPVYEQV  788 (1233)
T ss_pred             --------HHHhhhhHHHHHHHhhC--ccccchHHHHHHHH----------HHHHHhcCCCCccHHHHHHHHcCCccccc
Confidence                    12345688899999986  55666665554432          11111  11  1156677777665432  


Q ss_pred             ---HHHHHHH-------HHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHH
Q 008257          233 ---LRLASIE-------LIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQML  302 (572)
Q Consensus       233 ---v~~~a~~-------~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~  302 (572)
                         +..+|..       +|...+...+..          ....|+.-+.++.....++.-|.-.++.+-.+-+.    .-
T Consensus       789 ~~~l~kqa~~siA~cvA~Lt~~~~~~s~s----------~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~----s~  854 (1233)
T KOG1824|consen  789 TDGLHKQAYYSIAKCVAALTCACPQKSKS----------LATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDL----SP  854 (1233)
T ss_pred             ccchhHHHHHHHHHHHHHHHHhccccchh----------HHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCC----Cc
Confidence               2222221       222222211111          12234444444433236777777777776442110    01


Q ss_pred             hCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHH
Q 008257          303 DEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSA  382 (572)
Q Consensus       303 ~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa  382 (572)
                      ..+.-..++..+.+          +.+.++..|.-||++++.+   |-+        ..+|.+.+...+.  +.-|.--.
T Consensus       855 ~~e~~~~iieaf~s----------p~edvksAAs~ALGsl~vg---nl~--------~yLpfil~qi~sq--pk~QyLLL  911 (1233)
T KOG1824|consen  855 QNELKDTIIEAFNS----------PSEDVKSAASYALGSLAVG---NLP--------KYLPFILEQIESQ--PKRQYLLL  911 (1233)
T ss_pred             chhhHHHHHHHcCC----------ChHHHHHHHHHHhhhhhcC---chH--------hHHHHHHHHHhcc--hHhHHHHH
Confidence            11222344455544          4677888999999999864   221        3468888888774  55666666


Q ss_pred             HHHHHhhhhc-cccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHH
Q 008257          383 TALENLSLES-KNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVE  461 (572)
Q Consensus       383 ~aL~~ls~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~  461 (572)
                      .+|..+.... .+.-+   +    ++.                                  ..+.-|.+-.++..++++.
T Consensus       912 hSlkevi~~~svd~~~---~----~v~----------------------------------~IW~lL~k~cE~~eegtR~  950 (1233)
T KOG1824|consen  912 HSLKEVIVSASVDGLK---P----YVE----------------------------------KIWALLFKHCECAEEGTRN  950 (1233)
T ss_pred             HHHHHHHHHhccchhh---h----hHH----------------------------------HHHHHHHHhcccchhhhHH
Confidence            6665543211 11000   0    000                                  1222233333455677788


Q ss_pred             HHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHH-cchhhhhhhcCCCCchHHHHHHh
Q 008257          462 ASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERIL-RTDDIAYEVSGDPNVSTALVDAF  540 (572)
Q Consensus       462 ~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~-~~~~~~~~~~~~~~~~~~Lv~ll  540 (572)
                      ..+..|+.|+..++      +.     -+|.|-..+ .++.+..+.-++.++.-.. ..++.-+.+-. ..+ .-...++
T Consensus       951 vvAECLGkL~l~ep------es-----LlpkL~~~~-~S~a~~~rs~vvsavKfsisd~p~~id~~lk-~~i-g~fl~~~ 1016 (1233)
T KOG1824|consen  951 VVAECLGKLVLIEP------ES-----LLPKLKLLL-RSEASNTRSSVVSAVKFSISDQPQPIDPLLK-QQI-GDFLKLL 1016 (1233)
T ss_pred             HHHHHhhhHHhCCh------HH-----HHHHHHHHh-cCCCcchhhhhhheeeeeecCCCCccCHHHH-HHH-HHHHHHH
Confidence            88889999887543      11     146676667 4888888877777764322 22222222222 122 2567889


Q ss_pred             hcCCchhHHHHHHHHHhhcc
Q 008257          541 QHADYRTRQIAERALKHIDK  560 (572)
Q Consensus       541 ~~~~~~~~~~Aa~aL~~L~~  560 (572)
                      +++|.+||+.|--++-.-.+
T Consensus      1017 ~dpDl~VrrvaLvv~nSaah 1036 (1233)
T KOG1824|consen 1017 RDPDLEVRRVALVVLNSAAH 1036 (1233)
T ss_pred             hCCchhHHHHHHHHHHHHHc
Confidence            99999999999888765554

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.31  E-value=0.0065  Score=67.30  Aligned_cols=224  Identities=16%  Similarity=0.155  Sum_probs=153.0

Q ss_pred             HHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHc
Q 008257          280 QAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEH  359 (572)
Q Consensus       280 ~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~  359 (572)
                      |..|+.+|+.+-.-.+=-...-..-|++|+.+++|++.          ..+++--.+-+..++-..   |+.+|..+++.
T Consensus       487 RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~----------a~ELrpiLVFIWAKILAv---D~SCQ~dLvKe  553 (1387)
T KOG1517|consen  487 RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSS----------ARELRPILVFIWAKILAV---DPSCQADLVKE  553 (1387)
T ss_pred             HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccc----------hHhhhhhHHHHHHHHHhc---CchhHHHHHhc
Confidence            45566666665443333334455679999999999973          233344444455566544   89999999999


Q ss_pred             CchHHHHHHhccC-C-cHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchh
Q 008257          360 NLAALFIELLQSN-G-LDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETF  437 (572)
Q Consensus       360 g~i~~Lv~lL~~~-~-~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~  437 (572)
                      ++..-+++.|..+ . +++-|..||..|+.+..+-. +                                       .+.
T Consensus       554 ~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~-l---------------------------------------GQ~  593 (1387)
T KOG1517|consen  554 NGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFK-L---------------------------------------GQK  593 (1387)
T ss_pred             cCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccc-h---------------------------------------hHH
Confidence            9888889888873 2 56889999999988865311 0                                       011


Q ss_pred             hhhhccchHHHHHhhcCC-CHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 008257          438 CLLEGHAVEKLIALLDHT-NEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERI  516 (572)
Q Consensus       438 ~l~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l  516 (572)
                      ...+.+.|..-...|.++ .+-.+.=.+-.|+.|..|-.   ...+.=.+.++...|..+| ..+-++++..|+.+|.++
T Consensus       594 acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~---~Arw~G~r~~AhekL~~~L-sD~vpEVRaAAVFALgtf  669 (1387)
T KOG1517|consen  594 ACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYD---EARWSGRRDNAHEKLILLL-SDPVPEVRAAAVFALGTF  669 (1387)
T ss_pred             HhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcc---hhhhccccccHHHHHHHHh-cCccHHHHHHHHHHHHHH
Confidence            123444555555556553 56667778889999998743   5566667889999999999 478899999999999999


Q ss_pred             Hcc-----hhhh----hhhc-------CCCCch---HHHHHHhhcCCchhHHHHHHHHHhhcc
Q 008257          517 LRT-----DDIA----YEVS-------GDPNVS---TALVDAFQHADYRTRQIAERALKHIDK  560 (572)
Q Consensus       517 ~~~-----~~~~----~~~~-------~~~~~~---~~Lv~ll~~~~~~~~~~Aa~aL~~L~~  560 (572)
                      ..+     ++-.    .++.       ....++   ..|+.+++.+++-++...+-+|.+...
T Consensus       670 l~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~  732 (1387)
T KOG1517|consen  670 LSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVV  732 (1387)
T ss_pred             hcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence            863     1111    1111       111122   378899999999999999999988764

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.30  E-value=0.0064  Score=64.37  Aligned_cols=277  Identities=15%  Similarity=0.124  Sum_probs=177.6

Q ss_pred             HHHHHHHhhcCCCcHHHHHHcCChHHHHHHH--hc---cCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccch
Q 008257           96 ALKALNQISSCEPSAKVLIHAGILPPLVKDL--FT---VGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVS  170 (572)
Q Consensus        96 A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL--~s---~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~  170 (572)
                      |+.+|+-|+.++.+.+.+....++..|.++-  ..   ...+..+..+...|..+|+|+.-.+...+        +.+..
T Consensus         1 ~L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR--------~~~~~   72 (446)
T PF10165_consen    1 CLETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSAR--------QIFVD   72 (446)
T ss_pred             CHHHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHH--------HHHHH
Confidence            4567888888888888888777888888765  00   00113457889999999999987654332        34566


Q ss_pred             hhhHHHHHHHHhcC-----ChhHHHHHHHHHHHccCCCCccHHHHHH-HHhcCChHHHHHHhcCC---------------
Q 008257          171 EDIVHNLLHLISNT-----GPTIECKLLQVLVGLTSSPTTVLSVVSA-IKSSGATISLVQFVEAP---------------  229 (572)
Q Consensus       171 ~~~i~~Lv~lL~~~-----~~~~q~~a~~aL~~l~~~~~~~~~~~~~-i~~~g~i~~Lv~lL~~~---------------  229 (572)
                      .|..+.++..|+..     +++++.-..|.|.-++....   ..+.. +-+.+|+..++..|...               
T Consensus        73 ~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~---~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~  149 (446)
T PF10165_consen   73 LGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRP---DDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPS  149 (446)
T ss_pred             cCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCh---hHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCC
Confidence            78889999999875     78899999999988887654   23444 44568888887765310               


Q ss_pred             --CHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhc-------cCCCChHHHHHHHHHHhcCCCCcHHHH--
Q 008257          230 --QNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVIS-------ENVGISKEQAAAVGLLAELPERDLGLT--  298 (572)
Q Consensus       230 --~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~-------~~~~~~~~~~~A~~~L~~L~~~~~~~~--  298 (572)
                        +......+++++.|+..+.+....+...   ..++.|+.+|.       ++.+.......++.+|.|++.......  
T Consensus       150 ~~~~~~l~EiLKllFNit~~~~~~~~~~~~---~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~  226 (446)
T PF10165_consen  150 PMDEEALSEILKLLFNITLHYPKSVPEEFS---PSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLS  226 (446)
T ss_pred             cchHHHHHHHHHHHHHhhhccCcccchhhh---HHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhc
Confidence              2234567788999997543322110111   23444444432       222234678889999999865332220  


Q ss_pred             -----H----HHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHc----------
Q 008257          299 -----R----QMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEH----------  359 (572)
Q Consensus       299 -----~----~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~----------  359 (572)
                           .    .......+..|+.+|...-. .... ....+.....+.+|.+++..   +...|+.++..          
T Consensus       227 ~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~-~~~~-~~l~~~l~PlL~lL~~~~~~---~~~~Rk~lr~~lLP~~~Dr~~  301 (446)
T PF10165_consen  227 PKFQQSSLFPEGDNMDVVERLLDFLDKRLD-KYEA-LKLDELLTPLLTLLTRLARA---AREVRKYLRARLLPPDKDRKK  301 (446)
T ss_pred             ccCCcccccCCCCChHHHHHHHHHHHHHHH-hcCc-ccchhhHhhHHHHHHHHHHh---cHHHHHHHHHHhCCChhhccc
Confidence                 0    01233457788888865211 0000 01234456677888888864   56777776552          


Q ss_pred             ------CchHHHHHHhccCCcHHHHHHHHHHHHHhhhhc
Q 008257          360 ------NLAALFIELLQSNGLDKVQMVSATALENLSLES  392 (572)
Q Consensus       360 ------g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~  392 (572)
                            ..-..|+.++.++ .+.+|..++.-|+.++..+
T Consensus       302 ~~e~~~tL~~rLlrLmt~~-~~~~k~~vaellf~Lc~~d  339 (446)
T PF10165_consen  302 PPEKGDTLRSRLLRLMTSP-DPQLKDAVAELLFVLCKED  339 (446)
T ss_pred             CCCCCcchHHHHHHHhCCC-CchHHHHHHHHHHHHHhhh
Confidence                  3445788999998 6999999999999987644

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.25  E-value=0.0089  Score=63.86  Aligned_cols=223  Identities=17%  Similarity=0.198  Sum_probs=152.0

Q ss_pred             ChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHH
Q 008257          218 ATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGL  297 (572)
Q Consensus       218 ~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~  297 (572)
                      --+-++.||.+.-+.+|..|+-++..+.-.    ..++++.   ++|.|++-|+.+++  .++.+|+.+|+.|+..+|.+
T Consensus       145 La~Dv~tLL~sskpYvRKkAIl~lykvFLk----YPeAlr~---~FprL~EkLeDpDp--~V~SAAV~VICELArKnPkn  215 (877)
T KOG1059|consen  145 LADDVFTLLNSSKPYVRKKAILLLYKVFLK----YPEALRP---CFPRLVEKLEDPDP--SVVSAAVSVICELARKNPQN  215 (877)
T ss_pred             HHHHHHHHHhcCchHHHHHHHHHHHHHHHh----hhHhHhh---hHHHHHHhccCCCc--hHHHHHHHHHHHHHhhCCcc
Confidence            345677899999999999999998877632    1235663   79999999999997  89999999999999988766


Q ss_pred             HHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHH
Q 008257          298 TRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKV  377 (572)
Q Consensus       298 ~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v  377 (572)
                      --.+     -|.+..+|-.+         .+-|++-..+.....++-.   .|...+.     .+|+|.+++++. +   
T Consensus       216 yL~L-----AP~ffkllttS---------sNNWmLIKiiKLF~aLtpl---EPRLgKK-----Lieplt~li~sT-~---  269 (877)
T KOG1059|consen  216 YLQL-----APLFYKLLVTS---------SNNWVLIKLLKLFAALTPL---EPRLGKK-----LIEPITELMEST-V---  269 (877)
T ss_pred             cccc-----cHHHHHHHhcc---------CCCeehHHHHHHHhhcccc---Cchhhhh-----hhhHHHHHHHhh-H---
Confidence            3322     37777888652         3678888888887777743   6766554     579999999986 2   


Q ss_pred             HHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCH
Q 008257          378 QMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNE  457 (572)
Q Consensus       378 k~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~  457 (572)
                         |-..|+......-.-                 .++      .+-+         +.+..+ .=+++.|=-++.++|+
T Consensus       270 ---AmSLlYECvNTVVa~-----------------s~s------~g~~---------d~~asi-qLCvqKLr~fiedsDq  313 (877)
T KOG1059|consen  270 ---AMSLLYECVNTVVAV-----------------SMS------SGMS---------DHSASI-QLCVQKLRIFIEDSDQ  313 (877)
T ss_pred             ---HHHHHHHHHHHheee-----------------hhc------cCCC---------CcHHHH-HHHHHHHhhhhhcCCc
Confidence               222222211100000                 000      0000         000001 1156777788889999


Q ss_pred             hHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcch
Q 008257          458 KVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTD  520 (572)
Q Consensus       458 ~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~~  520 (572)
                      ..+--.+-|++.++..++      +.+...  -..++++| ...|+.+|-+|+.++.-+..-+
T Consensus       314 NLKYlgLlam~KI~ktHp------~~Vqa~--kdlIlrcL-~DkD~SIRlrALdLl~gmVskk  367 (877)
T KOG1059|consen  314 NLKYLGLLAMSKILKTHP------KAVQAH--KDLILRCL-DDKDESIRLRALDLLYGMVSKK  367 (877)
T ss_pred             cHHHHHHHHHHHHhhhCH------HHHHHh--HHHHHHHh-ccCCchhHHHHHHHHHHHhhhh
Confidence            999999999999987543      233222  24577899 6999999999999998887543

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=97.23  E-value=0.021  Score=60.07  Aligned_cols=343  Identities=10%  Similarity=0.091  Sum_probs=188.2

Q ss_pred             HHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHcc
Q 008257          121 PLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLT  200 (572)
Q Consensus       121 ~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~  200 (572)
                      ..+.+|+++     ++.+++.|+.+.+.|+..=..+.++      ..+..-|  ..|.+-|....|++--..+.|++.+.
T Consensus       608 tiL~~L~~k-----~p~vR~~aadl~~sl~~vlk~c~e~------~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~  674 (975)
T COG5181         608 TILKLLRSK-----PPDVRIRAADLMGSLAKVLKACGET------KELAKLG--NILYENLGEDYPEVLGSILKAICSIY  674 (975)
T ss_pred             HHHHHhcCC-----CccHHHHHHHHHHHHHHHHHhcchH------HHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHh
Confidence            344566654     5899999999988886421100000      1111112  23455666778888887788777775


Q ss_pred             CCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhH--HHHHhcccCChhhHHhhhccCCCChH
Q 008257          201 SSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHEL--ADALRGAVGQLGSLIRVISENVGISK  278 (572)
Q Consensus       201 ~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~--~~~i~~~~g~l~~Lv~lL~~~~~~~~  278 (572)
                      +.-.- ...+.-  -.|.+|.|...|++++.+++.+...++..++...++.+  .+-++.    ---|+++|.+-+.  +
T Consensus       675 sv~~~-~~mqpP--i~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRI----cfeLvd~Lks~nK--e  745 (975)
T COG5181         675 SVHRF-RSMQPP--ISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRI----CFELVDSLKSWNK--E  745 (975)
T ss_pred             hhhcc-cccCCc--hhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHH----HHHHHHHHHHhhH--H
Confidence            54210 000000  25889999999999999999999999999987644332  233332    2457888887774  8


Q ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHH
Q 008257          279 EQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCE  358 (572)
Q Consensus       279 ~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~  358 (572)
                      ++..|..+++.++.-       +--..++..|++-|+...+.    .++.   ..-+++.....             .--
T Consensus       746 iRR~A~~tfG~Is~a-------iGPqdvL~~LlnnLkvqeRq----~Rvc---tsvaI~iVae~-------------cgp  798 (975)
T COG5181         746 IRRNATETFGCISRA-------IGPQDVLDILLNNLKVQERQ----QRVC---TSVAISIVAEY-------------CGP  798 (975)
T ss_pred             HHHhhhhhhhhHHhh-------cCHHHHHHHHHhcchHHHHH----hhhh---hhhhhhhhHhh-------------cCc
Confidence            999898888776541       11112334444444431110    0000   00112211111             122


Q ss_pred             cCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhh
Q 008257          359 HNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFC  438 (572)
Q Consensus       359 ~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~  438 (572)
                      ..++|.|..--..+ ...||.-...|++.+.....+.++.                                       +
T Consensus       799 fsVlP~lm~dY~TP-e~nVQnGvLkam~fmFeyig~~s~d---------------------------------------Y  838 (975)
T COG5181         799 FSVLPTLMSDYETP-EANVQNGVLKAMCFMFEYIGQASLD---------------------------------------Y  838 (975)
T ss_pred             hhhHHHHHhcccCc-hhHHHHhHHHHHHHHHHHHHHHHHH---------------------------------------H
Confidence            35678877766677 7889988888888876654433210                                       1


Q ss_pred             hhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhh----cCCHHHHHHHHHHHH
Q 008257          439 LLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLE----KRTENLQRRAVWVVE  514 (572)
Q Consensus       439 l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~----~~~~~~~~~a~~~l~  514 (572)
                      +-  -..|.|-+-|...|+--+..|...+..|+.+....       ...++.-+|+.+| .    .+++.+...-...++
T Consensus       839 vy--~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gt-------g~eda~IHLlNll-wpNIle~sPhvi~~~~Eg~e  908 (975)
T COG5181         839 VY--SITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGT-------GDEDAAIHLLNLL-WPNILEPSPHVIQSFDEGME  908 (975)
T ss_pred             HH--HhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCc-------ccHHHHHHHHHHh-hhhccCCCcHHHHHHHHHHH
Confidence            11  12344556677788888889999999998763210       0111222344444 1    233444333333333


Q ss_pred             HHHcchhhhhhhcCCCCchHHHHHHhhcCCchhHHHHHHHHHhhccc--CCCCCCCC
Q 008257          515 RILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHIDKI--PNFSGIFP  569 (572)
Q Consensus       515 ~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~--~~~s~~~~  569 (572)
                      .+      +..++. +.+-.-+++=|.+++..||+.=...+..+..+  -.++.||+
T Consensus       909 ~~------~~~lg~-g~~m~Yv~qGLFHPs~~VRk~ywtvyn~myv~~~damvp~yp  958 (975)
T COG5181         909 SF------ATVLGS-GAMMKYVQQGLFHPSSTVRKRYWTVYNIMYVFDSDAMVPCYP  958 (975)
T ss_pred             HH------HHHhcc-HHHHHHHHHhccCchHHHHHHHHHHHhhhhhccccccccccc
Confidence            22      222332 22223445556677777876666666555442  23445554

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=97.21  E-value=0.041  Score=53.68  Aligned_cols=292  Identities=9%  Similarity=0.082  Sum_probs=187.8

Q ss_pred             CCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHH--HccCCHHHHHHHHHHHHHhcc-CcchhHHHHhhhH-HHH
Q 008257            6 SENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQ--ILEGPQETKLSLAAFLGDLAL-NSDVKVLVARTVG-SCL   81 (572)
Q Consensus         6 s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~--L~~~~~~~~~~aa~~L~~l~~-~~~~k~~i~~~g~-~~L   81 (572)
                      .+|.++...|.+-+..++.-+.....++++...+++-.+  -...+.-+|......+..+.. +.+.-......|. ..|
T Consensus       139 geddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlL  218 (524)
T KOG4413|consen  139 GEDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLL  218 (524)
T ss_pred             CCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHH
Confidence            367778899999999999999999999999999888543  223444556666666766665 5565556666777 777


Q ss_pred             HHhccc-CCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccc
Q 008257           82 INIMKS-GNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSIT  160 (572)
Q Consensus        82 v~lL~s-~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~  160 (572)
                      ..-|+. .+.-++-+++.....|+..+..++.+...|.|..+....+-.++   ++--+-.+......+-....     +
T Consensus       219 eaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGads---dPfekfralmgfgkffgkea-----i  290 (524)
T KOG4413|consen  219 EAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADS---DPFEKFRALMGFGKFFGKEA-----I  290 (524)
T ss_pred             HHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCC---CcHHHHHHHHHHHHHhcchH-----H
Confidence            777765 67778899999999999988889999999999999999864432   23334334433333322110     1


Q ss_pred             cCCCccccch--hhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHh---cCCC-HHHH
Q 008257          161 VGPDNQTLVS--EDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFV---EAPQ-NDLR  234 (572)
Q Consensus       161 ~~~~~~~l~~--~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL---~~~~-~~v~  234 (572)
                      +|-.-+.++.  .-+|..-++++.+.+|+.+..|+.++.-+.++..+.    ..+ ..-|-|..-.++   .+.+ ..-+
T Consensus       291 mdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGa----dll-lkTgppaaehllarafdqnahakq  365 (524)
T KOG4413|consen  291 MDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGA----DLL-LKTGPPAAEHLLARAFDQNAHAKQ  365 (524)
T ss_pred             hhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchh----HHH-hccCChHHHHHHHHHhcccccchH
Confidence            1100011111  124555667777899999999999999999887652    222 233444333333   2222 2457


Q ss_pred             HHHHHHHHHcCCC---CChh---------HHHHHh----ccc--CChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHH
Q 008257          235 LASIELIQNLSPH---MGHE---------LADALR----GAV--GQLGSLIRVISENVGISKEQAAAVGLLAELPERDLG  296 (572)
Q Consensus       235 ~~a~~~L~~Ls~~---~~~~---------~~~~i~----~~~--g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~  296 (572)
                      +.+..+|.+++..   .++.         ....+.    .+.  ..+..+...++.+.+  +++.++..++..++...=-
T Consensus       366 eaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfp--EihcAalktfTAiaaqPWa  443 (524)
T KOG4413|consen  366 EAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFP--EIHCAALKTFTAIAAQPWA  443 (524)
T ss_pred             HHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCCh--hhHHHHHHHHHHHHcCcHH
Confidence            7778888888742   1111         111111    110  234456666777775  9999999999998886656


Q ss_pred             HHHHHHhCCChHHHHH
Q 008257          297 LTRQMLDEGAFGLIFS  312 (572)
Q Consensus       297 ~~~~l~~~g~l~~Lv~  312 (572)
                      .+..+.++|.+...+.
T Consensus       444 lkeifakeefieiVtD  459 (524)
T KOG4413|consen  444 LKEIFAKEEFIEIVTD  459 (524)
T ss_pred             HHHHhcCccceeeecc
Confidence            6666777777665543

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.20  E-value=0.076  Score=56.88  Aligned_cols=304  Identities=16%  Similarity=0.216  Sum_probs=181.0

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCC--HHHHHH-HHHHHHHcCCCCCh
Q 008257          174 VHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQ--NDLRLA-SIELIQNLSPHMGH  250 (572)
Q Consensus       174 i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~--~~v~~~-a~~~L~~Ls~~~~~  250 (572)
                      +..+..=|.+.++..+.-|+.++.++....     .++++  +.-|+   ++|.+++  +-++.. |+++|+-+-.. + 
T Consensus       113 in~iknDL~srn~~fv~LAL~~I~niG~re-----~~ea~--~~DI~---KlLvS~~~~~~vkqkaALclL~L~r~s-p-  180 (938)
T KOG1077|consen  113 INSIKNDLSSRNPTFVCLALHCIANIGSRE-----MAEAF--ADDIP---KLLVSGSSMDYVKQKAALCLLRLFRKS-P-  180 (938)
T ss_pred             HHHHHhhhhcCCcHHHHHHHHHHHhhccHh-----HHHHh--hhhhH---HHHhCCcchHHHHHHHHHHHHHHHhcC-c-
Confidence            444444455677778888888888886542     33332  23455   6666665  345554 44555544332 2 


Q ss_pred             hHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhc--cCCCC-----
Q 008257          251 ELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQ--LGETR-----  323 (572)
Q Consensus       251 ~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~--~~~~~-----  323 (572)
                      +   .+... +-...++.+|...+-  .+-.++...|..|++.+++.-.     +.++.-+..|....  .+...     
T Consensus       181 D---l~~~~-~W~~riv~LL~D~~~--gv~ta~~sLi~~lvk~~p~~yk-----~~~~~avs~L~riv~~~~t~~qdYTy  249 (938)
T KOG1077|consen  181 D---LVNPG-EWAQRIVHLLDDQHM--GVVTAATSLIEALVKKNPESYK-----TCLPLAVSRLSRIVVVVGTSLQDYTY  249 (938)
T ss_pred             c---ccChh-hHHHHHHHHhCcccc--ceeeehHHHHHHHHHcCCHHHh-----hhHHHHHHHHHHHHhhcccchhhcee
Confidence            2   22221 346778888887773  5666777777777776554422     45555555444311  11110     


Q ss_pred             CCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccC-CcHHHH-HHHHHHHH----HhhhhccccCC
Q 008257          324 GSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSN-GLDKVQ-MVSATALE----NLSLESKNLTK  397 (572)
Q Consensus       324 ~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~vk-~~Aa~aL~----~ls~~~~~~~~  397 (572)
                      -.-..+|++-+++.+|..+...  +|+..+..+.+  ++..+....+.+ .+.+++ .+|-.|+-    +|+.+-.   .
T Consensus       250 y~vP~PWL~vKl~rlLq~~p~~--~D~~~r~~l~e--vl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D---~  322 (938)
T KOG1077|consen  250 YFVPAPWLQVKLLRLLQIYPTP--EDPSTRARLNE--VLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLD---S  322 (938)
T ss_pred             ecCCChHHHHHHHHHHHhCCCC--CCchHHHHHHH--HHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcC---C
Confidence            0124789999999999988655  78888776544  223333333322 122333 33433321    1221110   0


Q ss_pred             CCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccc
Q 008257          398 LPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDI  477 (572)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~  477 (572)
                                                          +... +  ..++..|-++|.+....++--|+..++.|+..+.  
T Consensus       323 ------------------------------------e~~l-l--~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~--  361 (938)
T KOG1077|consen  323 ------------------------------------EPEL-L--SRAVNQLGQFLSHRETNIRYLALESMCKLASSEF--  361 (938)
T ss_pred             ------------------------------------cHHH-H--HHHHHHHHHHhhcccccchhhhHHHHHHHHhccc--
Confidence                                                0111 1  2377788999999999999999999999997643  


Q ss_pred             hhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcchhhhhhhcCCCCchHHHHHHhhcCCchhHHHHHHHHHh
Q 008257          478 EQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKH  557 (572)
Q Consensus       478 ~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~  557 (572)
                        ....+..+  ..-++..|+..+|..++.+|+.+|..++..+ +.+++.      ..|++.|.+.+...|+.-..=.+-
T Consensus       362 --s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~-Nak~IV------~elLqYL~tAd~sireeivlKvAI  430 (938)
T KOG1077|consen  362 --SIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVS-NAKQIV------AELLQYLETADYSIREEIVLKVAI  430 (938)
T ss_pred             --hHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchh-hHHHHH------HHHHHHHhhcchHHHHHHHHHHHH
Confidence              23344443  5667788866889999999999998887543 333433      368999999998888765544444


Q ss_pred             hc
Q 008257          558 ID  559 (572)
Q Consensus       558 L~  559 (572)
                      |+
T Consensus       431 La  432 (938)
T KOG1077|consen  431 LA  432 (938)
T ss_pred             HH
Confidence            43

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=97.18  E-value=0.13  Score=54.02  Aligned_cols=291  Identities=12%  Similarity=0.088  Sum_probs=166.8

Q ss_pred             hHHHHHHhcCCCH-HHHHHHHHHHHHcCCCCChhHHHHHhcccCChhh-HHhhhccCCCChHHHHHHHHHHhcCCCCcHH
Q 008257          219 TISLVQFVEAPQN-DLRLASIELIQNLSPHMGHELADALRGAVGQLGS-LIRVISENVGISKEQAAAVGLLAELPERDLG  296 (572)
Q Consensus       219 i~~Lv~lL~~~~~-~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~-Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~  296 (572)
                      ...++.....+.+ ..+..++.++.+++....++.  .+..+..++-. ...-++++.+ ..+|.+|+++|.+-   -..
T Consensus       135 m~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~--li~~sN~il~aiv~ga~k~et~-~avRLaaL~aL~ds---l~f  208 (858)
T COG5215         135 MEEMVRNVGDEQPVSGKCESLGICGYHCESEAPED--LIQMSNVILFAIVMGALKNETT-SAVRLAALKALMDS---LMF  208 (858)
T ss_pred             HHHHHHhccccCchHhHHHHHHHHHHHhhccCHHH--HHHHhhHHHHHHHHhhcccCch-HHHHHHHHHHHHHH---HHH
Confidence            3344444444444 688899999999986543321  12222122222 2233444444 47899999988761   112


Q ss_pred             HHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHH
Q 008257          297 LTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDK  376 (572)
Q Consensus       297 ~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~  376 (572)
                      .+.-+..++-..++.+...+...+      ++.+++..+.+.|.++-.-   +=+..+...+.-........++++ +++
T Consensus       209 v~~nf~~E~erNy~mqvvceatq~------~d~e~q~aafgCl~kim~L---yY~fm~~ymE~aL~alt~~~mks~-nd~  278 (858)
T COG5215         209 VQGNFCYEEERNYFMQVVCEATQG------NDEELQHAAFGCLNKIMML---YYKFMQSYMENALAALTGRFMKSQ-NDE  278 (858)
T ss_pred             HHHhhcchhhhchhheeeehhccC------CcHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcCc-chH
Confidence            334455555556666655542222      4678888899999888743   444555566666667777888888 899


Q ss_pred             HHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhh-hccchHHHHHhhcCC
Q 008257          377 VQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLL-EGHAVEKLIALLDHT  455 (572)
Q Consensus       377 vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~-~~g~i~~Lv~lL~~~  455 (572)
                      ++..|..--..+.....+-.-. .        .   -+   +    -.|..      ...|... -++.+|-|++||...
T Consensus       279 va~qavEfWsticeEeid~~~e-~--------~---~~---p----e~p~q------n~~fa~aav~dvlP~lL~LL~~q  333 (858)
T COG5215         279 VAIQAVEFWSTICEEEIDGEME-D--------K---YL---P----EVPAQ------NHGFARAAVADVLPELLSLLEKQ  333 (858)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHH-H--------h---hc---c----cCchh------hcchHHHHHHHHHHHHHHHHHhc
Confidence            8877765433333221110000 0        0   00   0    00110      0122211 345899999999763


Q ss_pred             CH-------hHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcc--hhhhhhh
Q 008257          456 NE-------KVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRT--DDIAYEV  526 (572)
Q Consensus       456 ~~-------~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~--~~~~~~~  526 (572)
                      ++       .+..+|...|--+++...      ..|.+- ....+-+-+ .+++-..++.|+.++..+...  +.+...+
T Consensus       334 ~ed~~~DdWn~smaA~sCLqlfaq~~g------d~i~~p-Vl~FvEqni-~~~~w~nreaavmAfGSvm~gp~~~~lT~~  405 (858)
T COG5215         334 GEDYYGDDWNPSMAASSCLQLFAQLKG------DKIMRP-VLGFVEQNI-RSESWANREAAVMAFGSVMHGPCEDCLTKI  405 (858)
T ss_pred             CCCccccccchhhhHHHHHHHHHHHhh------hHhHHH-HHHHHHHhc-cCchhhhHHHHHHHhhhhhcCccHHHHHhh
Confidence            33       456666666766654321      122221 111222334 266777889999999999843  5666666


Q ss_pred             cCCCCchHHHHHHhhcCCchhHHHHHHHHHhhcc
Q 008257          527 SGDPNVSTALVDAFQHADYRTRQIAERALKHIDK  560 (572)
Q Consensus       527 ~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~~  560 (572)
                      ... .++ .+..+..+..--++..++|++..++-
T Consensus       406 V~q-alp-~i~n~m~D~~l~vk~ttAwc~g~iad  437 (858)
T COG5215         406 VPQ-ALP-GIENEMSDSCLWVKSTTAWCFGAIAD  437 (858)
T ss_pred             HHh-hhH-HHHHhcccceeehhhHHHHHHHHHHH
Confidence            653 444 67777777778999999999887764

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.17  E-value=0.49  Score=51.00  Aligned_cols=261  Identities=11%  Similarity=0.127  Sum_probs=145.1

Q ss_pred             HHHHHhcccCC--HHHHHHHHHHHHHhhcC-CCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCC
Q 008257           79 SCLINIMKSGN--MQAREAALKALNQISSC-EPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHD  155 (572)
Q Consensus        79 ~~Lv~lL~s~~--~~~~~~A~~aL~~Ls~~-~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~  155 (572)
                      +-+-++|.|++  .-++..|+-||..|-.. ++-   +--.+-..+++.+|...+     +.+.-.+...+.-|++..++
T Consensus       149 ~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl---~~~~~W~~riv~LL~D~~-----~gv~ta~~sLi~~lvk~~p~  220 (938)
T KOG1077|consen  149 DDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDL---VNPGEWAQRIVHLLDDQH-----MGVVTAATSLIEALVKKNPE  220 (938)
T ss_pred             hhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccc---cChhhHHHHHHHHhCccc-----cceeeehHHHHHHHHHcCCH
Confidence            34446777654  34566666666666653 321   112356788899997543     66667777888888875443


Q ss_pred             CCccccCCCccccchhhhHHHHHHHHhc-------------CChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHH
Q 008257          156 FDSITVGPDNQTLVSEDIVHNLLHLISN-------------TGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISL  222 (572)
Q Consensus       156 ~~~~~~~~~~~~l~~~~~i~~Lv~lL~~-------------~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L  222 (572)
                      ..+.+         -.-+|..|.+....             +.|=.+.++++.|..+-...++  ..+...  ...+..+
T Consensus       221 ~yk~~---------~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~--~~r~~l--~evl~~i  287 (938)
T KOG1077|consen  221 SYKTC---------LPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDP--STRARL--NEVLERI  287 (938)
T ss_pred             HHhhh---------HHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCc--hHHHHH--HHHHHHH
Confidence            22111         11233333333321             3555778888988887433332  222221  1123333


Q ss_pred             HHHhcCC--CHHHH-HHHHHH--H--HHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcH
Q 008257          223 VQFVEAP--QNDLR-LASIEL--I--QNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDL  295 (572)
Q Consensus       223 v~lL~~~--~~~v~-~~a~~~--L--~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~  295 (572)
                      +...+..  ..+++ .+|-.+  +  -+|+.+.+.+- +.+.   .++..|-++|.+...  .+|.-|.-..+.|+....
T Consensus       288 Lnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~-~ll~---~~~~~Lg~fls~rE~--NiRYLaLEsm~~L~ss~~  361 (938)
T KOG1077|consen  288 LNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEP-ELLS---RAVNQLGQFLSHRET--NIRYLALESMCKLASSEF  361 (938)
T ss_pred             HhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcH-HHHH---HHHHHHHHHhhcccc--cchhhhHHHHHHHHhccc
Confidence            3333211  11222 222221  1  12333322221 1333   378899999988875  788888888888877544


Q ss_pred             HHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcH
Q 008257          296 GLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLD  375 (572)
Q Consensus       296 ~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~  375 (572)
                      .+ +.+...  ...+++.|+..+         +.+++..++-.|..+|     |.++.+.|++     -+.+-|.+. +.
T Consensus       362 s~-davK~h--~d~Ii~sLkter---------DvSirrravDLLY~mc-----D~~Nak~IV~-----elLqYL~tA-d~  418 (938)
T KOG1077|consen  362 SI-DAVKKH--QDTIINSLKTER---------DVSIRRRAVDLLYAMC-----DVSNAKQIVA-----ELLQYLETA-DY  418 (938)
T ss_pred             hH-HHHHHH--HHHHHHHhcccc---------chHHHHHHHHHHHHHh-----chhhHHHHHH-----HHHHHHhhc-ch
Confidence            44 444443  677888887422         5677888999999998     6777776654     345566666 66


Q ss_pred             HHHHHHHHHHHHhh
Q 008257          376 KVQMVSATALENLS  389 (572)
Q Consensus       376 ~vk~~Aa~aL~~ls  389 (572)
                      .+|+.-+.=++-|+
T Consensus       419 sireeivlKvAILa  432 (938)
T KOG1077|consen  419 SIREEIVLKVAILA  432 (938)
T ss_pred             HHHHHHHHHHHHHH
Confidence            67766554444343

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.14  E-value=0.063  Score=56.12  Aligned_cols=352  Identities=13%  Similarity=0.114  Sum_probs=203.3

Q ss_pred             hH-HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCC
Q 008257           77 VG-SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHD  155 (572)
Q Consensus        77 g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~  155 (572)
                      ++ ||.+..+...+..++-.|+..|.|++.-........-.-....|.++-...     +.. ...+++.|-.+.+.-  
T Consensus        84 ~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDs-----d~~-V~~~aeLLdRLikdI--  155 (675)
T KOG0212|consen   84 KIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADS-----DQN-VRGGAELLDRLIKDI--  155 (675)
T ss_pred             HhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCC-----ccc-cccHHHHHHHHHHHh--
Confidence            56 999999998889999999999999997433322222223334444444321     123 346777777775431  


Q ss_pred             CCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHH
Q 008257          156 FDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRL  235 (572)
Q Consensus       156 ~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~  235 (572)
                           +-+..+.+.-++.||.|-.-+...++..+.-.+.-|..+-+.|.-  +....  -...++-|..+|..+++++|.
T Consensus       156 -----Vte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~--~m~~y--l~~~ldGLf~~LsD~s~eVr~  226 (675)
T KOG0212|consen  156 -----VTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDL--EMISY--LPSLLDGLFNMLSDSSDEVRT  226 (675)
T ss_pred             -----ccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcH--HHHhc--chHHHHHHHHHhcCCcHHHHH
Confidence                 111112344556666666666667888888888888777666541  11111  123466778888888889987


Q ss_pred             HHHHHHHHc----CCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHH
Q 008257          236 ASIELIQNL----SPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIF  311 (572)
Q Consensus       236 ~a~~~L~~L----s~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv  311 (572)
                      .+--++..+    ... +..    +.-. ..++.|+.-+.++++  .+|..|+.-|..+..-.+.. -...-+|.+..++
T Consensus       227 ~~~t~l~~fL~eI~s~-P~s----~d~~-~~i~vlv~~l~ss~~--~iq~~al~Wi~efV~i~g~~-~l~~~s~il~~iL  297 (675)
T KOG0212|consen  227 LTDTLLSEFLAEIRSS-PSS----MDYD-DMINVLVPHLQSSEP--EIQLKALTWIQEFVKIPGRD-LLLYLSGILTAIL  297 (675)
T ss_pred             HHHHHHHHHHHHHhcC-ccc----cCcc-cchhhccccccCCcH--HHHHHHHHHHHHHhcCCCcc-hhhhhhhhhhhcc
Confidence            666555544    222 111    1111 467888888988886  88888877776665532222 1233446666666


Q ss_pred             HHHhhhccCCCCCCcchhhHHHHH---HHHHHHHhccCCCChHHHHHHHHc-CchHHHHHHhccCCcHHHHHHHHHHHHH
Q 008257          312 SRVKSIQLGETRGSRFVTPFLEGL---LSVLARVTFVLSDEPDAIALCCEH-NLAALFIELLQSNGLDKVQMVSATALEN  387 (572)
Q Consensus       312 ~lL~~~~~~~~~~~~~~~~~~e~a---~~aL~~l~~~~~~~~~~~~~i~~~-g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~  387 (572)
                      .++.+..         ...+.+.+   -+.|..+.+    .+...+. ++. .++..|.+.+.+. ..+.|..+..=+..
T Consensus       298 pc~s~~e---------~~~i~~~a~~~n~~l~~l~s----~~~~~~~-id~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~  362 (675)
T KOG0212|consen  298 PCLSDTE---------EMSIKEYAQMVNGLLLKLVS----SERLKEE-IDYGSIIEVLTKYLSDD-REETRIAVLNWIIL  362 (675)
T ss_pred             cCCCCCc---------cccHHHHHHHHHHHHHHHHh----hhhhccc-cchHHHHHHHHHHhhcc-hHHHHHHHHHHHHH
Confidence            6665421         11122221   122333331    1221111 232 3566777777777 77777665554444


Q ss_pred             hhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHH
Q 008257          388 LSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAAL  467 (572)
Q Consensus       388 ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL  467 (572)
                      +-...++.                                         .-.-.....+.|++-|++++++|+..++..+
T Consensus       363 l~~~~p~q-----------------------------------------l~~h~~~if~tLL~tLsd~sd~vvl~~L~ll  401 (675)
T KOG0212|consen  363 LYHKAPGQ-----------------------------------------LLVHNDSIFLTLLKTLSDRSDEVVLLALSLL  401 (675)
T ss_pred             HHhhCcch-----------------------------------------hhhhccHHHHHHHHhhcCchhHHHHHHHHHH
Confidence            43322211                                         0011234668899999999999999999999


Q ss_pred             HHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHc
Q 008257          468 STVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILR  518 (572)
Q Consensus       468 ~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~  518 (572)
                      .+++.++... +...      .+..|+++.. ....-++.++.-++.++|.
T Consensus       402 a~i~~s~~~~-~~~~------fl~sLL~~f~-e~~~~l~~Rg~lIIRqlC~  444 (675)
T KOG0212|consen  402 ASICSSSNSP-NLRK------FLLSLLEMFK-EDTKLLEVRGNLIIRQLCL  444 (675)
T ss_pred             HHHhcCcccc-cHHH------HHHHHHHHHh-hhhHHHHhhhhHHHHHHHH
Confidence            9999876522 1111      1233445553 3444567778888777763

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.08  E-value=0.0061  Score=64.42  Aligned_cols=260  Identities=16%  Similarity=0.221  Sum_probs=165.1

Q ss_pred             hhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCC-
Q 008257          170 SEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHM-  248 (572)
Q Consensus       170 ~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~-  248 (572)
                      .+++...|..+....++.++.+|+.+|..|.....    ..++     .....++++...+..||..|+++++-.+... 
T Consensus       196 ~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~k----L~~~-----~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p  266 (823)
T KOG2259|consen  196 REHAARGLIYLEHDQDFRVRTHAVEGLLALSEGFK----LSKA-----CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCP  266 (823)
T ss_pred             HHHHHHHHHHHhcCCCcchHHHHHHHHHhhccccc----ccHH-----HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCC
Confidence            35566668888888899999999999988877432    2222     3456788999888999999988877665321 


Q ss_pred             ------ChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCC
Q 008257          249 ------GHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGET  322 (572)
Q Consensus       249 ------~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~  322 (572)
                            +++  +.+..  .++..+-+.+...+-  .++..|+.+|+.+..-+.++...-.+    ..+..-++..++...
T Consensus       267 ~~~e~e~~e--~kl~D--~aF~~vC~~v~D~sl--~VRV~AaK~lG~~~~vSee~i~QTLd----KKlms~lRRkr~ahk  336 (823)
T KOG2259|consen  267 APLERESEE--EKLKD--AAFSSVCRAVRDRSL--SVRVEAAKALGEFEQVSEEIIQQTLD----KKLMSRLRRKRTAHK  336 (823)
T ss_pred             Ccccchhhh--hhhHH--HHHHHHHHHHhcCce--eeeehHHHHhchHHHhHHHHHHHHHH----HHHhhhhhhhhhccc
Confidence                  111  12333  366677777776663  67888888888776545444332222    122222221111100


Q ss_pred             CCCcchhhHHHHHHHHHHHH--hc--------cCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhc
Q 008257          323 RGSRFVTPFLEGLLSVLARV--TF--------VLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLES  392 (572)
Q Consensus       323 ~~~~~~~~~~e~a~~aL~~l--~~--------~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~  392 (572)
                      +           ......+.  ++        +-.++.+....++..|+-..||.-|.+. =-+|++.|..+++.|+.+.
T Consensus       337 r-----------pk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDE-f~EVR~AAV~Sl~~La~ss  404 (823)
T KOG2259|consen  337 R-----------PKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDE-FYEVRRAAVASLCSLATSS  404 (823)
T ss_pred             c-----------hHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHH-HHHHHHHHHHHHHHHHcCC
Confidence            0           00000000  00        0001112233477889989999888887 7889999999999998654


Q ss_pred             cccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhh
Q 008257          393 KNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVID  472 (572)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~  472 (572)
                      +..                                             -..++..||+++...-+.|+..|..+|..++.
T Consensus       405 P~F---------------------------------------------A~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~  439 (823)
T KOG2259|consen  405 PGF---------------------------------------------AVRALDFLVDMFNDEIEVVRLKAIFALTMISV  439 (823)
T ss_pred             CCc---------------------------------------------HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            321                                             12378899999999999999999999999986


Q ss_pred             cCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHH
Q 008257          473 DGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVER  515 (572)
Q Consensus       473 ~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~  515 (572)
                      +.. .        +..-++.+++.| +..++++++..-.+|.+
T Consensus       440 ~l~-i--------~eeql~~il~~L-~D~s~dvRe~l~elL~~  472 (823)
T KOG2259|consen  440 HLA-I--------REEQLRQILESL-EDRSVDVREALRELLKN  472 (823)
T ss_pred             Hhe-e--------cHHHHHHHHHHH-HhcCHHHHHHHHHHHHh
Confidence            532 1        112345666778 58888888877776643

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=97.06  E-value=0.28  Score=54.74  Aligned_cols=412  Identities=15%  Similarity=0.150  Sum_probs=211.6

Q ss_pred             CHHHHHHHHHHHHHhccCcchhHHHHhhhH-HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHh
Q 008257           49 PQETKLSLAAFLGDLALNSDVKVLVARTVG-SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLF  127 (572)
Q Consensus        49 ~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~  127 (572)
                      .+.++..++.-+++++..-..  .....+. |.++++++.+..-+++.|...+.++...-.... =+..-..+.+++...
T Consensus       250 ~~~Vr~~~a~~l~~~a~~~~~--~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~-d~~~~~~~~l~~~~~  326 (759)
T KOG0211|consen  250 TPMVRRAVASNLGNIAKVLES--EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD-DVVKSLTESLVQAVE  326 (759)
T ss_pred             chhhHHHHHhhhHHHHHHHHH--HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch-hhhhhhhHHHHHHhc
Confidence            344455555555554442211  3333455 777777777767778888887777775211110 122335566666665


Q ss_pred             ccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccH
Q 008257          128 TVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVL  207 (572)
Q Consensus       128 s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~  207 (572)
                      .+     .-.++...+....-+...=        +   ........+++...+++....+.+...+.-...++..-+.  
T Consensus       327 d~-----~~~v~~~~~~~~~~L~~~~--------~---~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~--  388 (759)
T KOG0211|consen  327 DG-----SWRVSYMVADKFSELSSAV--------G---PSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNA--  388 (759)
T ss_pred             Ch-----hHHHHHHHhhhhhhHHHHh--------c---cccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCc--
Confidence            43     2344444444444443210        0   0112233467777777766666665555444444433211  


Q ss_pred             HHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHH
Q 008257          208 SVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLL  287 (572)
Q Consensus       208 ~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L  287 (572)
                      .....+.....+|.+-.+..+.++.++...+.....++.-.+.+  +.+.   -.+|.++..+.....  .++..-...+
T Consensus       389 ~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~--~ti~---~llp~~~~~l~de~~--~V~lnli~~l  461 (759)
T KOG0211|consen  389 SCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKE--RTIS---ELLPLLIGNLKDEDP--IVRLNLIDKL  461 (759)
T ss_pred             ccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcC--cCcc---ccChhhhhhcchhhH--HHHHhhHHHH
Confidence            11223344556788888888888888777665555554322211  0111   244555555555553  5666555444


Q ss_pred             hcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHH
Q 008257          288 AELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIE  367 (572)
Q Consensus       288 ~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~  367 (572)
                      +.+-...+......+...-+|.++.+-.+.          .-.+....+..+..++.    ...  ..+.+.-.-+.+..
T Consensus       462 s~~~~v~~v~g~~~~s~slLp~i~el~~d~----------~wRvr~ail~~ip~la~----q~~--~~~~~~~~~~l~~~  525 (759)
T KOG0211|consen  462 SLLEEVNDVIGISTVSNSLLPAIVELAEDL----------LWRVRLAILEYIPQLAL----QLG--VEFFDEKLAELLRT  525 (759)
T ss_pred             HHHHhccCcccchhhhhhhhhhhhhhccch----------hHHHHHHHHHHHHHHHH----hhh--hHHhhHHHHHHHHh
Confidence            443221222222334445555555554331          11122233333333331    111  11111111122222


Q ss_pred             HhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHH
Q 008257          368 LLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEK  447 (572)
Q Consensus       368 lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~  447 (572)
                      -|.+. ...+++.|+..+..++..-+..               |.                            ...-|+.
T Consensus       526 ~l~d~-v~~Ir~~aa~~l~~l~~~~G~~---------------w~----------------------------~~~~i~k  561 (759)
T KOG0211|consen  526 WLPDH-VYSIREAAARNLPALVETFGSE---------------WA----------------------------RLEEIPK  561 (759)
T ss_pred             hhhhh-HHHHHHHHHHHhHHHHHHhCcc---------------hh----------------------------HHHhhHH
Confidence            23333 5567877777776665422100               00                            1124555


Q ss_pred             HHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcc--hhhhhh
Q 008257          448 LIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRT--DDIAYE  525 (572)
Q Consensus       448 Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~--~~~~~~  525 (572)
                      +......++-.++...+.++..|+.-.      -..+....-++.+.++. .++.+.+|-+++..|..+...  ...+++
T Consensus       562 ~L~~~~q~~y~~R~t~l~si~~la~v~------g~ei~~~~Llp~~~~l~-~D~vanVR~nvak~L~~i~~~L~~~~~~~  634 (759)
T KOG0211|consen  562 LLAMDLQDNYLVRMTTLFSIHELAEVL------GQEITCEDLLPVFLDLV-KDPVANVRINVAKHLPKILKLLDESVRDE  634 (759)
T ss_pred             HHHHhcCcccchhhHHHHHHHHHHHHh------ccHHHHHHHhHHHHHhc-cCCchhhhhhHHHHHHHHHhhcchHHHHH
Confidence            555555556667777777777665321      11233444567788877 588999999999999988854  322222


Q ss_pred             hcCCCCchHHHHHHhhcCCchhHHHHHHHHHhhcc
Q 008257          526 VSGDPNVSTALVDAFQHADYRTRQIAERALKHIDK  560 (572)
Q Consensus       526 ~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~~  560 (572)
                      .     +.+.+..+.++.+.++|-.|..|+..+.-
T Consensus       635 ~-----v~pll~~L~~d~~~dvr~~a~~a~~~i~l  664 (759)
T KOG0211|consen  635 E-----VLPLLETLSSDQELDVRYRAILAFGSIEL  664 (759)
T ss_pred             H-----HHHHHHHhccCcccchhHHHHHHHHHHHH
Confidence            2     22577777888888888888887766543

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=97.05  E-value=0.13  Score=50.24  Aligned_cols=277  Identities=12%  Similarity=0.112  Sum_probs=164.7

Q ss_pred             hcCCCHHHHHHHHHHHHHcCCC-CChhHHHH--HhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHH
Q 008257          226 VEAPQNDLRLASIELIQNLSPH-MGHELADA--LRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQML  302 (572)
Q Consensus       226 L~~~~~~v~~~a~~~L~~Ls~~-~~~~~~~~--i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~  302 (572)
                      |..++..++..+++.+.++-.+ +.+.+.+.  +... +.++.++..+..+++  ++-.+|...|..++... .-.+.+.
T Consensus        91 LiaddasVKiLackqigcilEdcDtnaVseillvvNa-eilklildcIggedd--eVAkAAiesikrialfp-aaleaiF  166 (524)
T KOG4413|consen   91 LIADDASVKILACKQIGCILEDCDTNAVSEILLVVNA-EILKLILDCIGGEDD--EVAKAAIESIKRIALFP-AALEAIF  166 (524)
T ss_pred             ccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhh-hHHHHHHHHHcCCcH--HHHHHHHHHHHHHHhcH-HHHHHhc
Confidence            3456677888888888877643 33333332  2344 889999999998886  88888999999988743 4446777


Q ss_pred             hCCChHHHHHH-HhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHH
Q 008257          303 DEGAFGLIFSR-VKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVS  381 (572)
Q Consensus       303 ~~g~l~~Lv~l-L~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~A  381 (572)
                      +...+..+-.. |...         .+.-.+-.....+..+.+.   +|+....+...|.+..|..-|+...+..|....
T Consensus       167 eSellDdlhlrnlaak---------cndiaRvRVleLIieifSi---SpesaneckkSGLldlLeaElkGteDtLVianc  234 (524)
T KOG4413|consen  167 ESELLDDLHLRNLAAK---------CNDIARVRVLELIIEIFSI---SPESANECKKSGLLDLLEAELKGTEDTLVIANC  234 (524)
T ss_pred             ccccCChHHHhHHHhh---------hhhHHHHHHHHHHHHHHhc---CHHHHhHhhhhhHHHHHHHHhcCCcceeehhhH
Confidence            77777665432 1111         1122223344445555443   788888888999988888777774355555554


Q ss_pred             HHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCC--CHhH
Q 008257          382 ATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHT--NEKV  459 (572)
Q Consensus       382 a~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~--~~~v  459 (572)
                      ..-...++...-                                         ..-++-+.|.|..+.+++...  +|--
T Consensus       235 iElvteLaeteH-----------------------------------------greflaQeglIdlicnIIsGadsdPfe  273 (524)
T KOG4413|consen  235 IELVTELAETEH-----------------------------------------GREFLAQEGLIDLICNIISGADSDPFE  273 (524)
T ss_pred             HHHHHHHHHHhh-----------------------------------------hhhhcchhhHHHHHHHHhhCCCCCcHH
Confidence            444445543210                                         011245678888888888654  4444


Q ss_pred             HHHHHHHHHHhhhcCccchhhHHHHHhc--CChHHHHHHHhhcCCHHHHHHHHHHHHHHHcchhhhhhhcCCCC--chHH
Q 008257          460 VEASLAALSTVIDDGVDIEQGVMVLCEA--QGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPN--VSTA  535 (572)
Q Consensus       460 ~~~A~~aL~~l~~~~~~~~~~~~~i~~~--g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~--~~~~  535 (572)
                      .-.++...+.+.....-.+-.-+.+++.  -+|...++++ +..|++.++.|..++..+-.+.+..+-+...+.  +...
T Consensus       274 kfralmgfgkffgkeaimdvseeaicealiiaidgsfEmi-EmnDpdaieaAiDalGilGSnteGadlllkTgppaaehl  352 (524)
T KOG4413|consen  274 KFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMI-EMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHL  352 (524)
T ss_pred             HHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhh-hcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHH
Confidence            4446666666654321111112223322  1344566777 689999999999999888766665555544433  2222


Q ss_pred             HHHHhhcCCchhHHHHHHHHHhhcc
Q 008257          536 LVDAFQHADYRTRQIAERALKHIDK  560 (572)
Q Consensus       536 Lv~ll~~~~~~~~~~Aa~aL~~L~~  560 (572)
                      |....+.+-..-++.+-+||+.++.
T Consensus       353 larafdqnahakqeaaihaLaaIag  377 (524)
T KOG4413|consen  353 LARAFDQNAHAKQEAAIHALAAIAG  377 (524)
T ss_pred             HHHHhcccccchHHHHHHHHHHhhc
Confidence            3333333333444566667766654

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.00  E-value=0.013  Score=62.08  Aligned_cols=239  Identities=15%  Similarity=0.154  Sum_probs=134.2

Q ss_pred             ChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHH---hcCC--C
Q 008257          218 ATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLL---AELP--E  292 (572)
Q Consensus       218 ~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L---~~L~--~  292 (572)
                      +...|..+..+.|..||..|+..|-.|+.+  -..    .+  .+....+++|+.+.+  .++.+|+.++   +|..  .
T Consensus       199 ~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg--~kL----~~--~~Y~~A~~~lsD~~e--~VR~aAvqlv~v~gn~~p~~  268 (823)
T KOG2259|consen  199 AARGLIYLEHDQDFRVRTHAVEGLLALSEG--FKL----SK--ACYSRAVKHLSDDYE--DVRKAAVQLVSVWGNRCPAP  268 (823)
T ss_pred             HHHHHHHHhcCCCcchHHHHHHHHHhhccc--ccc----cH--HHHHHHHHHhcchHH--HHHHHHHHHHHHHHhcCCCc
Confidence            344488888889999999999998888753  222    22  245677888887775  8888886654   4443  1


Q ss_pred             CcHHHH-HHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhcc
Q 008257          293 RDLGLT-RQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQS  371 (572)
Q Consensus       293 ~~~~~~-~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~  371 (572)
                      .+.+.. ..+. ..++..+...+++..          -.++-.|+.+|..+...   +.+...+-.+...    ..-|+.
T Consensus       269 ~e~e~~e~kl~-D~aF~~vC~~v~D~s----------l~VRV~AaK~lG~~~~v---See~i~QTLdKKl----ms~lRR  330 (823)
T KOG2259|consen  269 LERESEEEKLK-DAAFSSVCRAVRDRS----------LSVRVEAAKALGEFEQV---SEEIIQQTLDKKL----MSRLRR  330 (823)
T ss_pred             ccchhhhhhhH-HHHHHHHHHHHhcCc----------eeeeehHHHHhchHHHh---HHHHHHHHHHHHH----hhhhhh
Confidence            111111 1222 245666677776521          11223466666666543   3333333222221    111111


Q ss_pred             CCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHh
Q 008257          372 NGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIAL  451 (572)
Q Consensus       372 ~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~l  451 (572)
                      .   .........+.   .+. .+++-         +.+  .        +..|--.   ..+...-|+..|+-..+|.=
T Consensus       331 k---r~ahkrpk~l~---s~G-ewSsG---------k~~--~--------advpsee---~d~~~~siI~sGACGA~VhG  381 (823)
T KOG2259|consen  331 K---RTAHKRPKALY---SSG-EWSSG---------KEW--N--------ADVPSEE---DDEEEESIIPSGACGALVHG  381 (823)
T ss_pred             h---hhcccchHHHH---hcC-CcccC---------ccc--c--------ccCchhh---ccccccccccccccceeeee
Confidence            1   01111111111   111 01110         000  0        0000000   00112236678888888888


Q ss_pred             hcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcchhh
Q 008257          452 LDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDI  522 (572)
Q Consensus       452 L~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~~~~  522 (572)
                      |+..--+|+.+|+..++.|+...+++-.        .++..|++++ +...+.++.+|..+|-.|..+-.+
T Consensus       382 lEDEf~EVR~AAV~Sl~~La~ssP~FA~--------~aldfLvDMf-NDE~~~VRL~ai~aL~~Is~~l~i  443 (823)
T KOG2259|consen  382 LEDEFYEVRRAAVASLCSLATSSPGFAV--------RALDFLVDMF-NDEIEVVRLKAIFALTMISVHLAI  443 (823)
T ss_pred             chHHHHHHHHHHHHHHHHHHcCCCCcHH--------HHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHhee
Confidence            8888889999999999999987664321        2568899999 478899999999999988876333

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.99  E-value=0.13  Score=52.29  Aligned_cols=267  Identities=13%  Similarity=0.113  Sum_probs=159.7

Q ss_pred             HHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccC------cc-hhH---HHHhhhH-HHHHH
Q 008257           15 AEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALN------SD-VKV---LVARTVG-SCLIN   83 (572)
Q Consensus        15 A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~------~~-~k~---~i~~~g~-~~Lv~   83 (572)
                      ...-++.++.-|+--..+++..+++.|+.+|.+.+.++-+.....|..+.-.      .+ ...   .+.++++ +.||+
T Consensus       104 ~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvq  183 (536)
T KOG2734|consen  104 IIQEMHVLATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQ  183 (536)
T ss_pred             HHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHH
Confidence            3445666777788888999999999999999999999988888888887641      11 122   2345566 88887


Q ss_pred             hccc---CCH---HHHHHHHHHHHHhhcC-CCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCC
Q 008257           84 IMKS---GNM---QAREAALKALNQISSC-EPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDF  156 (572)
Q Consensus        84 lL~s---~~~---~~~~~A~~aL~~Ls~~-~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~  156 (572)
                      -+.-   +..   ....+++..+-|+... ++....+++.|.+..|+.-+....   ....-+.+|.++|+-+-.++.. 
T Consensus       184 nveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~---~f~aNk~YasEiLaillq~s~e-  259 (536)
T KOG2734|consen  184 NVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKA---AFDANKQYASEILAILLQNSDE-  259 (536)
T ss_pred             HHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhccc---CcchhHHHHHHHHHHHhccCch-
Confidence            6653   222   2356788888998875 556788888898888877554332   2346688899988887654321 


Q ss_pred             CccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhc---CCC---
Q 008257          157 DSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVE---APQ---  230 (572)
Q Consensus       157 ~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~---~~~---  230 (572)
                                                                          .+.....-.||..|++-+.   ..+   
T Consensus       260 ----------------------------------------------------~~~~~~~l~GiD~lL~~la~yk~~dP~~  287 (536)
T KOG2734|consen  260 ----------------------------------------------------NRKLLGPLDGIDVLLRQLAVYKRHDPAT  287 (536)
T ss_pred             ----------------------------------------------------hhhhhcCcccHHHHHhhcchhhccCCCC
Confidence                                                                1222223344444443331   112   


Q ss_pred             HHHHHHHHHHHHHcCCC--CChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcH--HHHHHHHhCCC
Q 008257          231 NDLRLASIELIQNLSPH--MGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDL--GLTRQMLDEGA  306 (572)
Q Consensus       231 ~~v~~~a~~~L~~Ls~~--~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~--~~~~~l~~~g~  306 (572)
                      .+-++.-..++.+||..  .+....+.+.+.  ++....-+++...   ..+..|+++|-....+++  .++..+++.++
T Consensus       288 ~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~E--GlqLm~Lmlr~Kk---~sr~SalkvLd~am~g~~gt~~C~kfVe~lG  362 (536)
T KOG2734|consen  288 VDEEEMMENLFDCLCSLLMAPANRERFLKGE--GLQLMNLMLREKK---VSRGSALKVLDHAMFGPEGTPNCNKFVEILG  362 (536)
T ss_pred             cCHHHHHHHHHHHHHHHhcChhhhhhhhccc--cHHHHHHHHHHHH---HhhhhHHHHHHHHHhCCCchHHHHHHHHHHh
Confidence            23345555555555532  122222234443  4543333344422   566778888877766554  56678999999


Q ss_pred             hHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHH
Q 008257          307 FGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARV  342 (572)
Q Consensus       307 l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l  342 (572)
                      +.++..+......-..+...+....-|.....|+.+
T Consensus       363 LrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl  398 (536)
T KOG2734|consen  363 LRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASL  398 (536)
T ss_pred             HHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHH
Confidence            999887665211111111123344455555555544

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.97  E-value=0.067  Score=58.09  Aligned_cols=320  Identities=17%  Similarity=0.198  Sum_probs=178.2

Q ss_pred             CCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhH-HHHHHh
Q 008257            6 SENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVG-SCLINI   84 (572)
Q Consensus         6 s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~Lv~l   84 (572)
                      +++|..+..|.+.+..+-.     ..+.+. ..+|+.+.++++.+.+|..++.+..++-.  .....+...|. +.|-++
T Consensus        97 d~np~iR~lAlrtm~~l~v-----~~i~ey-~~~Pl~~~l~d~~~yvRktaa~~vakl~~--~~~~~~~~~gl~~~L~~l  168 (734)
T KOG1061|consen   97 DPNPLIRALALRTMGCLRV-----DKITEY-LCDPLLKCLKDDDPYVRKTAAVCVAKLFD--IDPDLVEDSGLVDALKDL  168 (734)
T ss_pred             CCCHHHHHHHhhceeeEee-----hHHHHH-HHHHHHHhccCCChhHHHHHHHHHHHhhc--CChhhccccchhHHHHHH
Confidence            3455555555554443332     222222 46899999999999999888887776654  23345566788 999999


Q ss_pred             cccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHH-HHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCC
Q 008257           85 MKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVK-DLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGP  163 (572)
Q Consensus        85 L~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~-lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~  163 (572)
                      +..+++.+..+|+.+|..+...+.+...   .-..+.++. +|..-     +....+.-+.+|-+++...+...      
T Consensus       169 l~D~~p~VVAnAlaaL~eI~e~~~~~~~---~~l~~~~~~~lL~al-----~ec~EW~qi~IL~~l~~y~p~d~------  234 (734)
T KOG1061|consen  169 LSDSNPMVVANALAALSEIHESHPSVNL---LELNPQLINKLLEAL-----NECTEWGQIFILDCLAEYVPKDS------  234 (734)
T ss_pred             hcCCCchHHHHHHHHHHHHHHhCCCCCc---ccccHHHHHHHHHHH-----HHhhhhhHHHHHHHHHhcCCCCc------
Confidence            9999999999999999999976543111   112233332 22211     12334455566666665433211      


Q ss_pred             CccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHH
Q 008257          164 DNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQN  243 (572)
Q Consensus       164 ~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~  243 (572)
                          ......+..+...|....+.+...+.+.+..+...-.   . .........-++|+.++.+.. +++-.|++=+.-
T Consensus       235 ----~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~---~-~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~l  305 (734)
T KOG1061|consen  235 ----REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLK---Q-VNELLFKKVAPPLVTLLSSES-EIQYVALRNINL  305 (734)
T ss_pred             ----hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHH---H-HHHHHHHHhcccceeeecccc-hhhHHHHhhHHH
Confidence                1223455666666666677777777777766654421   1 122223456677888877765 555444332222


Q ss_pred             cCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCC
Q 008257          244 LSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETR  323 (572)
Q Consensus       244 Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~  323 (572)
                      +-...+ ++   +.     ....+-+.+..+++ .++..-+.++..++. +.+..+ +..        . ++.-.+    
T Consensus       306 il~~~p-~~---~~-----~~~~~Ff~kynDPi-YvK~eKleil~~la~-~~nl~q-vl~--------E-l~eYat----  360 (734)
T KOG1061|consen  306 ILQKRP-EI---LK-----VEIKVFFCKYNDPI-YVKLEKLEILIELAN-DANLAQ-VLA--------E-LKEYAT----  360 (734)
T ss_pred             HHHhCh-HH---HH-----hHhHeeeeecCCch-hhHHHHHHHHHHHhh-HhHHHH-HHH--------H-HHHhhh----
Confidence            212211 11   11     11112223344432 455555555555554 333322 211        1 221100    


Q ss_pred             CCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhcc
Q 008257          324 GSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESK  393 (572)
Q Consensus       324 ~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~  393 (572)
                        ..+.++...++.++.+++...   .   +   ..++++.|.++++.. .+-+...+...+..+-+.-+
T Consensus       361 --evD~~fvrkaIraig~~aik~---e---~---~~~cv~~lLell~~~-~~yvvqE~~vvi~dilRkyP  418 (734)
T KOG1061|consen  361 --EVDVDFVRKAVRAIGRLAIKA---E---Q---SNDCVSILLELLETK-VDYVVQEAIVVIRDILRKYP  418 (734)
T ss_pred             --hhCHHHHHHHHHHhhhhhhhh---h---h---hhhhHHHHHHHHhhc-ccceeeehhHHHHhhhhcCC
Confidence              124556677999999887431   1   1   168899999999977 55566667777777665443

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=96.94  E-value=0.068  Score=52.04  Aligned_cols=256  Identities=13%  Similarity=0.081  Sum_probs=146.3

Q ss_pred             HHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHh
Q 008257          224 QFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLD  303 (572)
Q Consensus       224 ~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~  303 (572)
                      .+++.-++-.+--|+.++.++.-..  +-+..+..+..+-..+++++++.-....+|...+-+++-++. ++++.+.+-+
T Consensus       156 kl~Q~i~~lTrlfav~cl~~l~~~~--e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf-~~~~aqdi~K  232 (432)
T COG5231         156 KLSQLIDFLTRLFAVSCLSNLEFDV--EKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTF-SKECAQDIDK  232 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhH--HHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc-CHHHHHHHHH
Confidence            3444444446777777888776431  112222222134556788887654323678888888888887 6666543322


Q ss_pred             -CCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccC--CcHHHHHH
Q 008257          304 -EGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSN--GLDKVQMV  380 (572)
Q Consensus       304 -~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~vk~~  380 (572)
                       -.-+.-|+.+++..         ..+.+..-+.+.+.++...  ...+.+....-.|-+.+-|++|..+  .++++...
T Consensus       233 ~~dli~dli~iVk~~---------~keKV~Rlc~~Iv~n~~dK--~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~d  301 (432)
T COG5231         233 MDDLINDLIAIVKER---------AKEKVLRLCCGIVANVLDK--SPKGYIFSPLLLNDISKCVQVLLERKYSDEELVID  301 (432)
T ss_pred             HHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHhcc--cccchhhhhHhhcchHHHHHHHHhcCCChHHHHHH
Confidence             24566667777652         2334555677788887742  1224444444444334445555543  25555443


Q ss_pred             HHHHHHHhhhhccccC-----------CCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhh--ccchHH
Q 008257          381 SATALENLSLESKNLT-----------KLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLE--GHAVEK  447 (572)
Q Consensus       381 Aa~aL~~ls~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~--~g~i~~  447 (572)
                      --..=..+-.+...++           ....+.+++- +                   .+.|+ .|.-.+.+  -..+..
T Consensus       302 i~~i~s~l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~-~-------------------~dFWs-~N~d~l~kdny~i~k~  360 (432)
T COG5231         302 IERIRSRLVQNTKKLCIFDNYLNELDSGRLEWSPYHH-K-------------------KDFWS-TNLDMLIKDNYEIVKV  360 (432)
T ss_pred             HHHHHHHHHhhhhhhhHHHHHHHHHhhCcccCCCccc-c-------------------cCchh-hhHHHHhhhhHHHHHH
Confidence            3332222322222221           1111111111 1                   11221 11111221  125678


Q ss_pred             HHHhhcCCCHh-HHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHc
Q 008257          448 LIALLDHTNEK-VVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILR  518 (572)
Q Consensus       448 Lv~lL~~~~~~-v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~  518 (572)
                      |.++|.++++. ....|+.=++.++...+   ++...+.+.||-..+.+++ +|+|+++|-.|..+++.+..
T Consensus       361 L~~~lq~n~~nt~i~vAc~Di~~~Vr~~P---E~~~vl~Kyg~k~~im~L~-nh~d~~VkfeAl~a~q~~i~  428 (432)
T COG5231         361 LKKYLQSNNPNTWICVACSDIFQLVRASP---EINAVLSKYGVKEIIMNLI-NHDDDDVKFEALQALQTCIS  428 (432)
T ss_pred             HHHHHhcCCCCceEeeeHhhHHHHHHhCc---hHHHHHHHhhhHHHHHHHh-cCCCchhhHHHHHHHHHHHh
Confidence            99999998887 45667777777775543   6678899999999999999 69999999999999988763

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=96.78  E-value=0.0045  Score=44.62  Aligned_cols=54  Identities=22%  Similarity=0.171  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHHhccCcchh-HHHHhhhHHHHHHhcccCCHHHHHHHHHHHHHh
Q 008257           50 QETKLSLAAFLGDLALNSDVK-VLVARTVGSCLINIMKSGNMQAREAALKALNQI  103 (572)
Q Consensus        50 ~~~~~~aa~~L~~l~~~~~~k-~~i~~~g~~~Lv~lL~s~~~~~~~~A~~aL~~L  103 (572)
                      +.+|..|+++|++++...... ........|.|+.+|++++..+|..|+++|.+|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            467899999999987633322 223333449999999999999999999999875

...

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=96.70  E-value=0.0054  Score=63.33  Aligned_cols=162  Identities=10%  Similarity=0.055  Sum_probs=114.0

Q ss_pred             HHHhhhH-HHHHHhcccCCHHHHHHHHHHHHHhhcCCCc-HHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHH
Q 008257           72 LVARTVG-SCLINIMKSGNMQAREAALKALNQISSCEPS-AKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANV  149 (572)
Q Consensus        72 ~i~~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~-~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nl  149 (572)
                      -+.+..+ ++|+++|+.++..+.--+..+++|+...=+| +..+.+.|.|..|+.++.+.+     ..+|.++.|+|..+
T Consensus       426 gL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKD-----daLqans~wvlrHl  500 (743)
T COG5369         426 GLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKD-----DALQANSEWVLRHL  500 (743)
T ss_pred             hccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcch-----hhhhhcchhhhhhh
Confidence            3445567 9999999987767777888999998875455 788899999999999998753     68999999999999


Q ss_pred             HhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcC----ChHHHHHH
Q 008257          150 VNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSG----ATISLVQF  225 (572)
Q Consensus       150 a~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g----~i~~Lv~l  225 (572)
                      .-++...+++       .+.....+..++.+.+.++..+|.+++..|.|++.+..-+++.+.......    -...|++-
T Consensus       501 myncq~~ekf-------~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k  573 (743)
T COG5369         501 MYNCQKNEKF-------KFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDK  573 (743)
T ss_pred             hhcCcchhhh-------hhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHH
Confidence            8776543322       234456688999999999999999999999999886432223333222211    23345555


Q ss_pred             hcCCCHHHHHHHHHHHHHcC
Q 008257          226 VEAPQNDLRLASIELIQNLS  245 (572)
Q Consensus       226 L~~~~~~v~~~a~~~L~~Ls  245 (572)
                      ++..+|-..+..+..|-+++
T Consensus       574 ~e~~np~~i~~~~yilv~~a  593 (743)
T COG5369         574 YEENNPMEILEGCYILVRNA  593 (743)
T ss_pred             HHhcCchhhhhhHHHHHHHH
Confidence            56666533333344444444

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=96.65  E-value=0.0093  Score=48.67  Aligned_cols=66  Identities=15%  Similarity=0.163  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCC--CHHHHHHHHHHHHHcCCCCChhHHHHHh
Q 008257          188 IECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAP--QNDLRLASIELIQNLSPHMGHELADALR  257 (572)
Q Consensus       188 ~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~a~~~L~~Ls~~~~~~~~~~i~  257 (572)
                      ++...++.|.++|..+.   .++..+++.||||.++.....+  +|-+|++|.+++++|+.+. .+.++.|.
T Consensus         2 ~K~~lvrlianl~~~~~---~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n-~eNQ~~I~   69 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNK---EVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGN-PENQEFIA   69 (102)
T ss_pred             cHHHHHHHHHHHHhCCH---HHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCC-HHHHHHHH
Confidence            35677888999998763   6889999999999999988654  5889999999999999874 34333443

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.60  E-value=0.66  Score=47.43  Aligned_cols=266  Identities=14%  Similarity=0.199  Sum_probs=162.8

Q ss_pred             HHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCC----CCh----hHHHHHhcccCChhh
Q 008257          194 QVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPH----MGH----ELADALRGAVGQLGS  265 (572)
Q Consensus       194 ~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~----~~~----~~~~~i~~~~g~l~~  265 (572)
                      +-+..++.-|    +.-..+.+-.+++.|++||.+.+.++-...+.+|..|++.    ++.    ...+++.+. +.++.
T Consensus       106 Q~mhvlAt~P----dLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg-~vlaL  180 (536)
T KOG2734|consen  106 QEMHVLATMP----DLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDG-QVLAL  180 (536)
T ss_pred             HHHHhhhcCh----HHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhc-cHHHH
Confidence            3344455554    3455778999999999999999999999999999999853    111    344566665 77888


Q ss_pred             HHhhhccCCC-C---hHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHH
Q 008257          266 LIRVISENVG-I---SKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLAR  341 (572)
Q Consensus       266 Lv~lL~~~~~-~---~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~  341 (572)
                      ||.-+..=+. .   ..-...+.+++.|+..-.+.+.+.+++.|.+.+|+.-+...  +...      .-...+...|.-
T Consensus       181 LvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k--~~f~------aNk~YasEiLai  252 (536)
T KOG2734|consen  181 LVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGK--AAFD------ANKQYASEILAI  252 (536)
T ss_pred             HHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcc--cCcc------hhHHHHHHHHHH
Confidence            8887753332 1   12345677888999888889989999999999988876642  1111      113345555555


Q ss_pred             HhccCCCChHHHHHHHHcCchHHHHHHhcc-----CCcHHHHH---HHHHHHHHhhhhccccCCCCCCCCCCCCcccccc
Q 008257          342 VTFVLSDEPDAIALCCEHNLAALFIELLQS-----NGLDKVQM---VSATALENLSLESKNLTKLPELPPSGFCASIFPC  413 (572)
Q Consensus       342 l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~-----~~~~~vk~---~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~  413 (572)
                      +-.   ++.+++..+-..+++..+++-+..     |.+..-++   +--.+|+.+....                     
T Consensus       253 llq---~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~---------------------  308 (536)
T KOG2734|consen  253 LLQ---NSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAP---------------------  308 (536)
T ss_pred             Hhc---cCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcCh---------------------
Confidence            553   244477778888888888766542     11111121   2222222221111                     


Q ss_pred             ccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHH
Q 008257          414 FSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPI  493 (572)
Q Consensus       414 ~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L  493 (572)
                                          .+.-..+...|++...=+++. ...-...|+.+|-.....++ ....+...++.+|.+.+
T Consensus       309 --------------------~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~-gt~~C~kfVe~lGLrti  366 (536)
T KOG2734|consen  309 --------------------ANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPE-GTPNCNKFVEILGLRTI  366 (536)
T ss_pred             --------------------hhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCC-chHHHHHHHHHHhHHHH
Confidence                                111123455677765555554 33445667788877775543 34567888899999987


Q ss_pred             HHHHhhcCC---------HHHHHHHHHHHHHHHc
Q 008257          494 LDVLLEKRT---------ENLQRRAVWVVERILR  518 (572)
Q Consensus       494 ~~lL~~~~~---------~~~~~~a~~~l~~l~~  518 (572)
                      ..+.-..+.         .+.-+.-..+|+.++.
T Consensus       367 F~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~  400 (536)
T KOG2734|consen  367 FPLFMKTPLKRKKRKISADEHEEHVCSILASLLR  400 (536)
T ss_pred             HHHHhhCccchhcccCcHHHHHHHHHHHHHHHHH
Confidence            766522222         2233445555655553

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=96.49  E-value=0.0068  Score=43.66  Aligned_cols=54  Identities=28%  Similarity=0.242  Sum_probs=42.3

Q ss_pred             hHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHh
Q 008257          330 PFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENL  388 (572)
Q Consensus       330 ~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~l  388 (572)
                      .+++.++++|.+++..   .++..+. ....++|.|+.+|+++ ++.||..|++||++|
T Consensus         2 ~vR~~A~~aLg~l~~~---~~~~~~~-~~~~~~~~L~~~L~d~-~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    2 RVRRAAAWALGRLAEG---CPELLQP-YLPELLPALIPLLQDD-DDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHCTTTT---THHHHHH-HHHHHHHHHHHHTTSS-SHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHhhHhcc---cHHHHHH-HHHHHHHHHHHHHcCC-CHHHHHHHHHHHhcC
Confidence            3578899999988753   4444443 4557889999999998 889999999999875

...

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=96.44  E-value=0.87  Score=48.06  Aligned_cols=325  Identities=13%  Similarity=0.110  Sum_probs=154.9

Q ss_pred             CCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHH-HHHhcc--CcchhHHHHhhhHHHHHH
Q 008257            7 ENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAF-LGDLAL--NSDVKVLVARTVGSCLIN   83 (572)
Q Consensus         7 ~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~-L~~l~~--~~~~k~~i~~~g~~~Lv~   83 (572)
                      .++.-+-+|++.|-.+-..|..        +.-.|++.+.... .++-.-|.. |.+...  -.++.+... .-.|.|-.
T Consensus       202 ~~~isqYHalGlLyq~kr~dkm--------a~lklv~hf~~n~-smknq~a~V~lvr~~~~ll~~n~q~~~-q~rpfL~~  271 (898)
T COG5240         202 GNPISQYHALGLLYQSKRTDKM--------AQLKLVEHFRGNA-SMKNQLAGVLLVRATVELLKENSQALL-QLRPFLNS  271 (898)
T ss_pred             CChHHHHHHHHHHHHHhcccHH--------HHHHHHHHhhccc-ccccchhheehHHHHHHHHHhChHHHH-HHHHHHHH
Confidence            3456677777777666544321        1224555554333 333222222 221111  122222221 11277788


Q ss_pred             hcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCC
Q 008257           84 IMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGP  163 (572)
Q Consensus        84 lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~  163 (572)
                      +|++...-++..+++++..++...-. ...+ .-.|..|-.+|+++.     ...|-.|..+|-.|++..+  ++..+  
T Consensus       272 wls~k~emV~lE~Ar~v~~~~~~nv~-~~~~-~~~vs~L~~fL~s~r-----v~~rFsA~Riln~lam~~P--~kv~v--  340 (898)
T COG5240         272 WLSDKFEMVFLEAARAVCALSEENVG-SQFV-DQTVSSLRTFLKSTR-----VVLRFSAMRILNQLAMKYP--QKVSV--  340 (898)
T ss_pred             HhcCcchhhhHHHHHHHHHHHHhccC-HHHH-HHHHHHHHHHHhcch-----HHHHHHHHHHHHHHHhhCC--ceeee--
Confidence            88887788899999999988853311 1111 235677777888753     6789999999999987543  22111  


Q ss_pred             CccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHH
Q 008257          164 DNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQN  243 (572)
Q Consensus       164 ~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~  243 (572)
                               +=+.+=.|+.+.+..+-..|+.+|..-....    .+-+.|   .-|+.++.=+..+   -+.-+..+++.
T Consensus       341 ---------cN~evEsLIsd~Nr~IstyAITtLLKTGt~e----~idrLv---~~I~sfvhD~SD~---FKiI~ida~rs  401 (898)
T COG5240         341 ---------CNKEVESLISDENRTISTYAITTLLKTGTEE----TIDRLV---NLIPSFVHDMSDG---FKIIAIDALRS  401 (898)
T ss_pred             ---------cChhHHHHhhcccccchHHHHHHHHHcCchh----hHHHHH---HHHHHHHHhhccC---ceEEeHHHHHH
Confidence                     1122333444455555556666655443331    111111   1233333332222   22233333333


Q ss_pred             cCCCCChhH---HH----HHhcccC-------ChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHH
Q 008257          244 LSPHMGHEL---AD----ALRGAVG-------QLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGL  309 (572)
Q Consensus       244 Ls~~~~~~~---~~----~i~~~~g-------~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~  309 (572)
                      |+-..+++-   -.    .+... |       .+..+.++++...   +-++.|+..|+.... |-+..+.      .-.
T Consensus       402 Lsl~Fp~k~~s~l~FL~~~L~~e-Gg~eFK~~~Vdaisd~~~~~p---~skEraLe~LC~fIE-Dcey~~I------~vr  470 (898)
T COG5240         402 LSLLFPSKKLSYLDFLGSSLLQE-GGLEFKKYMVDAISDAMENDP---DSKERALEVLCTFIE-DCEYHQI------TVR  470 (898)
T ss_pred             HHhhCcHHHHHHHHHHHHHHHhc-ccchHHHHHHHHHHHHHhhCc---hHHHHHHHHHHHHHh-hcchhHH------HHH
Confidence            332222110   00    01111 1       2333333333322   223333333333222 1111111      112


Q ss_pred             HHHHHhhhccCCCCCCc-----------chhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHH
Q 008257          310 IFSRVKSIQLGETRGSR-----------FVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQ  378 (572)
Q Consensus       310 Lv~lL~~~~~~~~~~~~-----------~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk  378 (572)
                      ++.+|....+....+.+           ++.-++.+|+.+|.+|+-.. +|+-..+.     +...|-.+|++. +++++
T Consensus       471 IL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~-~d~~~~~s-----v~~~lkRclnD~-DdeVR  543 (898)
T COG5240         471 ILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNI-SDVVSPQS-----VENALKRCLNDQ-DDEVR  543 (898)
T ss_pred             HHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCc-cccccHHH-----HHHHHHHHhhcc-cHHHH
Confidence            23333221100011111           33445667888998887432 24444443     346678889998 99999


Q ss_pred             HHHHHHHHHhh
Q 008257          379 MVSATALENLS  389 (572)
Q Consensus       379 ~~Aa~aL~~ls  389 (572)
                      ..|+.+|.++-
T Consensus       544 drAsf~l~~~~  554 (898)
T COG5240         544 DRASFLLRNMR  554 (898)
T ss_pred             HHHHHHHHhhh
Confidence            99999999884

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=96.37  E-value=0.7  Score=48.71  Aligned_cols=280  Identities=14%  Similarity=0.134  Sum_probs=143.2

Q ss_pred             cCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCC
Q 008257          183 NTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQ  262 (572)
Q Consensus       183 ~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~  262 (572)
                      +...-++..++++.+.++..+-+.+..      ...+..|-.+|.+.....|-.|.++|..|+...++.+  ..+.    
T Consensus       275 ~k~emV~lE~Ar~v~~~~~~nv~~~~~------~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv--~vcN----  342 (898)
T COG5240         275 DKFEMVFLEAARAVCALSEENVGSQFV------DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKV--SVCN----  342 (898)
T ss_pred             CcchhhhHHHHHHHHHHHHhccCHHHH------HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCcee--eecC----
Confidence            344567778888888776544221111      2357778888888888889999999998885544332  1121    


Q ss_pred             hhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHH
Q 008257          263 LGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARV  342 (572)
Q Consensus       263 l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l  342 (572)
                       +.+=.+....+.  .+..-|+.+|-.  .+..+....++     ..+.+++.+-..+ .         +--++.++..+
T Consensus       343 -~evEsLIsd~Nr--~IstyAITtLLK--TGt~e~idrLv-----~~I~sfvhD~SD~-F---------KiI~ida~rsL  402 (898)
T COG5240         343 -KEVESLISDENR--TISTYAITTLLK--TGTEETIDRLV-----NLIPSFVHDMSDG-F---------KIIAIDALRSL  402 (898)
T ss_pred             -hhHHHHhhcccc--cchHHHHHHHHH--cCchhhHHHHH-----HHHHHHHHhhccC-c---------eEEeHHHHHHH
Confidence             222233344443  455555555433  23333333332     2333333332111 1         11123333333


Q ss_pred             hccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCcccc
Q 008257          343 TFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITG  422 (572)
Q Consensus       343 ~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (572)
                      +-.   -|.-+..+     +..|...|...+..+.|+.+..|+..+....+..                           
T Consensus       403 sl~---Fp~k~~s~-----l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~s---------------------------  447 (898)
T COG5240         403 SLL---FPSKKLSY-----LDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDS---------------------------  447 (898)
T ss_pred             Hhh---CcHHHHHH-----HHHHHHHHHhcccchHHHHHHHHHHHHHhhCchH---------------------------
Confidence            321   33333332     4555555555447778888888877665543311                           


Q ss_pred             ccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCC
Q 008257          423 LCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRT  502 (572)
Q Consensus       423 ~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~  502 (572)
                                        +..+++.|+..++.  .+-.+-+++.|+.|...++...+-..      =|.++..-+ --.+
T Consensus       448 ------------------kEraLe~LC~fIED--cey~~I~vrIL~iLG~EgP~a~~P~~------yvrhIyNR~-iLEN  500 (898)
T COG5240         448 ------------------KERALEVLCTFIED--CEYHQITVRILGILGREGPRAKTPGK------YVRHIYNRL-ILEN  500 (898)
T ss_pred             ------------------HHHHHHHHHHHHhh--cchhHHHHHHHHHhcccCCCCCCcch------HHHHHHHHH-HHhh
Confidence                              12244555555542  23344455666666554441111000      123333333 1356


Q ss_pred             HHHHHHHHHHHHHHHcchhhhhhhcCCCCchHHHHHHhhcCCchhHHHHHHHHHhhc
Q 008257          503 ENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHID  559 (572)
Q Consensus       503 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~  559 (572)
                      .-++..|+.+|.++.-+.+.  .+.. ..+...|.+.+.+.|.++|.+|+-+|.++.
T Consensus       501 ~ivRsaAv~aLskf~ln~~d--~~~~-~sv~~~lkRclnD~DdeVRdrAsf~l~~~~  554 (898)
T COG5240         501 NIVRSAAVQALSKFALNISD--VVSP-QSVENALKRCLNDQDDEVRDRASFLLRNMR  554 (898)
T ss_pred             hHHHHHHHHHHHHhccCccc--cccH-HHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence            66777777777776633110  1110 112236777788888888888888888775

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=96.34  E-value=0.015  Score=47.49  Aligned_cols=70  Identities=14%  Similarity=0.105  Sum_probs=58.0

Q ss_pred             HHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHc
Q 008257          280 QAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEH  359 (572)
Q Consensus       280 ~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~  359 (572)
                      +...+.+|+|++..++.++..+.+.|+||.+++.-.-.        ..++-++|.++.++-+++..   |+++++.+.+.
T Consensus         3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD--------~~nP~irEwai~aiRnL~e~---n~eNQ~~I~~L   71 (102)
T PF09759_consen    3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNID--------DHNPFIREWAIFAIRNLCEG---NPENQEFIAQL   71 (102)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCC--------cccHHHHHHHHHHHHHHHhC---CHHHHHHHHhc
Confidence            45567899999999999999999999999999885431        14778999999999999984   99999887664


Q ss_pred             C
Q 008257          360 N  360 (572)
Q Consensus       360 g  360 (572)
                      -
T Consensus        72 ~   72 (102)
T PF09759_consen   72 E   72 (102)
T ss_pred             c
Confidence            3

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.18  E-value=0.012  Score=49.28  Aligned_cols=71  Identities=11%  Similarity=0.282  Sum_probs=60.0

Q ss_pred             chHHHHHhh-cCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHc
Q 008257          444 AVEKLIALL-DHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILR  518 (572)
Q Consensus       444 ~i~~Lv~lL-~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~  518 (572)
                      .+..|+++| .+.++.+...|+.=|+.++...+   .+...+.+.|+-..+.+++ +|+|++++..|+.+++++..
T Consensus        44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p---~gr~ii~~lg~K~~vM~Lm-~h~d~eVr~eAL~avQklm~  115 (119)
T PF11698_consen   44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYP---NGRNIIEKLGAKERVMELM-NHEDPEVRYEALLAVQKLMV  115 (119)
T ss_dssp             HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-G---GGHHHHHHHSHHHHHHHHT-S-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcceeehhhcchHHHHHHCh---hHHHHHHhcChHHHHHHHh-cCCCHHHHHHHHHHHHHHHH
Confidence            778999999 45678888889999999998754   6778888888888899999 69999999999999998873

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=96.16  E-value=3.3  Score=47.11  Aligned_cols=217  Identities=15%  Similarity=0.098  Sum_probs=131.1

Q ss_pred             hH-HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCC
Q 008257           77 VG-SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHD  155 (572)
Q Consensus        77 g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~  155 (572)
                      ++ ..|...|++.+..++..|++-+..++...+ + .++ --+|...++++...    .+...-.-|+-+|+.|+..+--
T Consensus       341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp-~-~La-d~vi~svid~~~p~----e~~~aWHgacLaLAELA~rGlL  413 (1133)
T KOG1943|consen  341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP-P-ELA-DQVIGSVIDLFNPA----EDDSAWHGACLALAELALRGLL  413 (1133)
T ss_pred             HHHHHHHHhccCCcchhhHHHHHHHHHHHccCc-H-HHH-HHHHHHHHHhcCcC----CchhHHHHHHHHHHHHHhcCCc
Confidence            44 889999999999999999999999998655 2 222 12445555655432    2245566888899999874321


Q ss_pred             CCccccCCCccccchhhhHHHHHHHHh--------cCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhc
Q 008257          156 FDSITVGPDNQTLVSEDIVHNLLHLIS--------NTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVE  227 (572)
Q Consensus       156 ~~~~~~~~~~~~l~~~~~i~~Lv~lL~--------~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~  227 (572)
                      ...          .-+.++|.++.-|.        +.+..++..|+-+++.++...+. ..+.. +.+.=.--.|..-+-
T Consensus       414 lps----------~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~-~~l~p-~l~~L~s~LL~~AlF  481 (1133)
T KOG1943|consen  414 LPS----------LLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSP-SDLKP-VLQSLASALLIVALF  481 (1133)
T ss_pred             chH----------HHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCCh-hhhhH-HHHHHHHHHHHHHhc
Confidence            110          12457777776664        24556888888888888765432 11211 111111112333344


Q ss_pred             CCCHHHHHHHHHHHHHcCCC-C----Chh-------------------HHHHHhcccCChhhHHhhhccCCC--C-hHHH
Q 008257          228 APQNDLRLASIELIQNLSPH-M----GHE-------------------LADALRGAVGQLGSLIRVISENVG--I-SKEQ  280 (572)
Q Consensus       228 ~~~~~v~~~a~~~L~~Ls~~-~----~~~-------------------~~~~i~~~~g~l~~Lv~lL~~~~~--~-~~~~  280 (572)
                      +++...|..|..+|...... .    +-+                   +...+.+.+|...++++-|-..+-  + ..++
T Consensus       482 DrevncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~ir  561 (1133)
T KOG1943|consen  482 DREVNCRRAASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIR  561 (1133)
T ss_pred             CchhhHhHHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHH
Confidence            55667888888888766532 1    111                   112233333666677766655431  1 4789


Q ss_pred             HHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhh
Q 008257          281 AAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKS  316 (572)
Q Consensus       281 ~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~  316 (572)
                      ..|++.|.+|+...++.    ...+.+|+|+.....
T Consensus       562 elaa~aL~~Ls~~~pk~----~a~~~L~~lld~~ls  593 (1133)
T KOG1943|consen  562 ELAAYALHKLSLTEPKY----LADYVLPPLLDSTLS  593 (1133)
T ss_pred             HHHHHHHHHHHHhhHHh----hcccchhhhhhhhcC
Confidence            99999999987755444    456778888876543

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=96.10  E-value=0.21  Score=47.74  Aligned_cols=179  Identities=20%  Similarity=0.185  Sum_probs=104.4

Q ss_pred             CCCHHHHHHHHHHHHhhccCc---chHHHHHHc--CCcHHHHHHHccCCHHHHHHHHHHHHHhccCcchh-HHHHhhhHH
Q 008257            6 SENLLTVEKAEKTLANLEKCE---NNVRQMAEN--GRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVK-VLVARTVGS   79 (572)
Q Consensus         6 s~~~~~~~~A~~~L~~L~~~~---~n~~~i~~~--g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k-~~i~~~g~~   79 (572)
                      +.|=..+..|..-|..+....   .+...+.+.  ..+..++..+.+....+-..|..++..++..-... ....+.-+|
T Consensus        18 ~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~   97 (228)
T PF12348_consen   18 ESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLP   97 (228)
T ss_dssp             -SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence            345567777888888776522   333333222  45667777777666667778888888887632222 222333349


Q ss_pred             HHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCcc
Q 008257           80 CLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSI  159 (572)
Q Consensus        80 ~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~  159 (572)
                      +|++.+.+....++..|..+|..+...-.....+    .++.+...+.+.     ++.+|..++..+..+........  
T Consensus        98 ~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~K-----n~~vR~~~~~~l~~~l~~~~~~~--  166 (228)
T PF12348_consen   98 PLLKKLGDSKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSK-----NPQVREECAEWLAIILEKWGSDS--  166 (228)
T ss_dssp             HHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S------HHHHHHHHHHHHHHHTT-------
T ss_pred             HHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCC-----CHHHHHHHHHHHHHHHHHccchH--
Confidence            9999999999999999999999999865411111    134444445443     48899999999999876432000  


Q ss_pred             ccCCCccccch----hhhHHHHHHHHhcCChhHHHHHHHHHHHccC
Q 008257          160 TVGPDNQTLVS----EDIVHNLLHLISNTGPTIECKLLQVLVGLTS  201 (572)
Q Consensus       160 ~~~~~~~~l~~----~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~  201 (572)
                            ..+..    +..++.+...+.+++++++..|-.++..+.+
T Consensus       167 ------~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~  206 (228)
T PF12348_consen  167 ------SVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYS  206 (228)
T ss_dssp             ------GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred             ------hhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence                  12222    4477788888889999999988888776643

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=96.09  E-value=0.28  Score=43.48  Aligned_cols=125  Identities=14%  Similarity=0.233  Sum_probs=93.5

Q ss_pred             HHHHHHcCChHHHHHHHhccCC-CCCCcchHHHHHHHHHHHHhcCC-CCCccccCCCccccchhhhHHHHHHHHhcC--C
Q 008257          110 AKVLIHAGILPPLVKDLFTVGS-NHLPMRLKEVSATILANVVNSGH-DFDSITVGPDNQTLVSEDIVHNLLHLISNT--G  185 (572)
Q Consensus       110 ~~~iv~~G~i~~Lv~lL~s~~~-~~~~~~~~~~aa~~L~nla~~~~-~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~--~  185 (572)
                      ..+.+..||++.|++++.++.. .....+.-..+..++..|..++. +|+          ..+..+|...+...+..  +
T Consensus         4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd----------~l~~~FI~Kia~~Vn~~~~d   73 (160)
T PF11841_consen    4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWD----------TLSDSFIKKIASYVNSSAMD   73 (160)
T ss_pred             HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchh----------hccHHHHHHHHHHHcccccc
Confidence            4567899999999999987531 00012445567777777777654 564          24567888888888753  5


Q ss_pred             hhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 008257          186 PTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPH  247 (572)
Q Consensus       186 ~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~  247 (572)
                      +.+...++..|-++..++.   .....+.+.=-++.|+.+|+..++++|.+|..++-.|-..
T Consensus        74 ~~i~q~sLaILEs~Vl~S~---~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~k  132 (160)
T PF11841_consen   74 ASILQRSLAILESIVLNSP---KLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLK  132 (160)
T ss_pred             chHHHHHHHHHHHHHhCCH---HHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence            7889999999999988764   3445566677899999999999999999999998887644

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=95.99  E-value=0.31  Score=55.56  Aligned_cols=285  Identities=15%  Similarity=0.120  Sum_probs=147.7

Q ss_pred             HHHHHHHHhc-CChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcC---CCCC
Q 008257          174 VHNLLHLISN-TGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLS---PHMG  249 (572)
Q Consensus       174 i~~Lv~lL~~-~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls---~~~~  249 (572)
                      |+.+...++. ...+.+..|+..|..++..-..  +.+    -...+|.++.+++.+..+||..|+.+|..+-   +.-+
T Consensus       424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d--e~~----LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~  497 (1431)
T KOG1240|consen  424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDD--EVK----LDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIP  497 (1431)
T ss_pred             HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch--HHH----HhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCC
Confidence            4444455543 4567788999999999886543  222    2457999999999999999999998877653   2222


Q ss_pred             hhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhcc-CCCCCCcch
Q 008257          250 HELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQL-GETRGSRFV  328 (572)
Q Consensus       250 ~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~-~~~~~~~~~  328 (572)
                      ..-+..+.+  -.+|.|-.++...+. ..++.+=+..|+.|+..-..    |.+.+---....++.+..+ +..+..   
T Consensus       498 ~~daniF~e--YlfP~L~~l~~d~~~-~~vRiayAsnla~LA~tA~r----Fle~~q~~~~~g~~n~~nset~~~~~---  567 (1431)
T KOG1240|consen  498 PSDANIFPE--YLFPHLNHLLNDSSA-QIVRIAYASNLAQLAKTAYR----FLELTQELRQAGMLNDPNSETAPEQN---  567 (1431)
T ss_pred             cccchhhHh--hhhhhhHhhhccCcc-ceehhhHHhhHHHHHHHHHH----HHHHHHHHHhcccccCcccccccccc---
Confidence            111122344  578888888877443 25666555666666542111    1111111111111111100 000000   


Q ss_pred             hhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhh---hccccCCCCCCCCCC
Q 008257          329 TPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSL---ESKNLTKLPELPPSG  405 (572)
Q Consensus       329 ~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~---~~~~~~~~~~~~~~~  405 (572)
                                         .+.+.++ + -.++-..++.||..+ .+-||+.-...|..|+.   .....+-+.      
T Consensus       568 -------------------~~~~~~~-L-~~~V~~~v~sLlsd~-~~~Vkr~Lle~i~~LC~FFGk~ksND~iL------  619 (1431)
T KOG1240|consen  568 -------------------YNTELQA-L-HHTVEQMVSSLLSDS-PPIVKRALLESIIPLCVFFGKEKSNDVIL------  619 (1431)
T ss_pred             -------------------cchHHHH-H-HHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHhhhcccccchH------
Confidence                               0111111 0 112223344455554 44555544444333321   111111000      


Q ss_pred             CCccccccccCCCc---c-------ccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCc
Q 008257          406 FCASIFPCFSKQPV---I-------TGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGV  475 (572)
Q Consensus       406 ~~~~~~~~~~~~~~---~-------~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~  475 (572)
                         ..+..|..+.+   +       ...|...+-        .=++.+.+|.|.+-|.++.+.|...|+++|..|...+.
T Consensus       620 ---shLiTfLNDkDw~LR~aFfdsI~gvsi~VG~--------rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~l  688 (1431)
T KOG1240|consen  620 ---SHLITFLNDKDWRLRGAFFDSIVGVSIFVGW--------RSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGL  688 (1431)
T ss_pred             ---HHHHHHhcCccHHHHHHHHhhccceEEEEee--------eeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcc
Confidence               00000000000   0       011111110        01367788889999999999999999999999998764


Q ss_pred             cchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcc
Q 008257          476 DIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRT  519 (572)
Q Consensus       476 ~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~  519 (572)
                      -.+.....|.+     -..-+| -|++.=++..++.+|..+.+.
T Consensus       689 l~K~~v~~i~~-----~v~PlL-~hPN~WIR~~~~~iI~~~~~~  726 (1431)
T KOG1240|consen  689 LRKPAVKDILQ-----DVLPLL-CHPNLWIRRAVLGIIAAIARQ  726 (1431)
T ss_pred             cchHHHHHHHH-----hhhhhe-eCchHHHHHHHHHHHHHHHhh
Confidence            22222223322     233456 499999999999999877754

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.95  E-value=1.8  Score=47.26  Aligned_cols=319  Identities=13%  Similarity=0.169  Sum_probs=176.8

Q ss_pred             HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHH-HHhccCCCCCCcchHHHHHHHHHHHHhcCCCCC
Q 008257           79 SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVK-DLFTVGSNHLPMRLKEVSATILANVVNSGHDFD  157 (572)
Q Consensus        79 ~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~-lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~  157 (572)
                      |.+-+.|.+.+.-+|++|..|+..+-.+-+   .++  --.|-|+. .|...    .++..|++|.-.|...-.      
T Consensus       137 p~IracleHrhsYVRrNAilaifsIyk~~~---~L~--pDapeLi~~fL~~e----~DpsCkRNAFi~L~~~D~------  201 (948)
T KOG1058|consen  137 PSIRACLEHRHSYVRRNAILAIFSIYKNFE---HLI--PDAPELIESFLLTE----QDPSCKRNAFLMLFTTDP------  201 (948)
T ss_pred             HHHHHHHhCcchhhhhhhheeehhHHhhhh---hhc--CChHHHHHHHHHhc----cCchhHHHHHHHHHhcCH------
Confidence            777788999999999999999988876411   111  11233443 44332    347788888877765521      


Q ss_pred             ccccCCCccccchhhhHHHHHHHHh---cCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHH
Q 008257          158 SITVGPDNQTLVSEDIVHNLLHLIS---NTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLR  234 (572)
Q Consensus       158 ~~~~~~~~~~l~~~~~i~~Lv~lL~---~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~  234 (572)
                                   +.++..|...+.   +-++..|.-.+..++..|....+    .    +..-|..+..+|.+.++.++
T Consensus       202 -------------ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~----~----~~~~i~~i~~lL~stssaV~  260 (948)
T KOG1058|consen  202 -------------ERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPA----E----KARYIRCIYNLLSSTSSAVI  260 (948)
T ss_pred             -------------HHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHH----H----hhHHHHHHHHHHhcCCchhh
Confidence                         234444444443   22456777777777777763321    1    23468889999999998999


Q ss_pred             HHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHH
Q 008257          235 LASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRV  314 (572)
Q Consensus       235 ~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL  314 (572)
                      -.|+..|..|+...  .   .+..   +...+++++...++. .++..-.--|..+...+..+-+     |.+--++.+|
T Consensus       261 fEaa~tlv~lS~~p--~---alk~---Aa~~~i~l~~kesdn-nvklIvldrl~~l~~~~~~il~-----~l~mDvLrvL  326 (948)
T KOG1058|consen  261 FEAAGTLVTLSNDP--T---ALKA---AASTYIDLLVKESDN-NVKLIVLDRLSELKALHEKILQ-----GLIMDVLRVL  326 (948)
T ss_pred             hhhcceEEEccCCH--H---HHHH---HHHHHHHHHHhccCc-chhhhhHHHHHHHhhhhHHHHH-----HHHHHHHHHc
Confidence            99988888888662  2   2332   345666666544331 2333333333333221211111     2233334444


Q ss_pred             hhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccC-----CcHHHHHHHHHHHHHhh
Q 008257          315 KSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSN-----GLDKVQMVSATALENLS  389 (572)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~-----~~~~vk~~Aa~aL~~ls  389 (572)
                      ..          .+-++.+.++.....+..+  .|-+..-.+.+.       ++.+..     .+..-|+.-..++...+
T Consensus       327 ss----------~dldvr~Ktldi~ldLvss--rNvediv~~Lkk-------e~~kT~~~e~d~~~~yRqlLiktih~ca  387 (948)
T KOG1058|consen  327 SS----------PDLDVRSKTLDIALDLVSS--RNVEDIVQFLKK-------EVMKTHNEESDDNGKYRQLLIKTIHACA  387 (948)
T ss_pred             Cc----------ccccHHHHHHHHHHhhhhh--ccHHHHHHHHHH-------HHHhccccccccchHHHHHHHHHHHHHh
Confidence            43          2455677777776666643  233221111110       111111     01222333334443332


Q ss_pred             hhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHH
Q 008257          390 LESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALST  469 (572)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~  469 (572)
                      ..                                             |-=+.+..|+.|++.|.+.++.-....+.-+..
T Consensus       388 v~---------------------------------------------Fp~~aatvV~~ll~fisD~N~~aas~vl~FvrE  422 (948)
T KOG1058|consen  388 VK---------------------------------------------FPEVAATVVSLLLDFISDSNEAAASDVLMFVRE  422 (948)
T ss_pred             hc---------------------------------------------ChHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence            10                                             111245689999999999888766655555554


Q ss_pred             hhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcc
Q 008257          470 VIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRT  519 (572)
Q Consensus       470 l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~  519 (572)
                      ...-   +.+....|     |..|++-+..-.+..+.+.|+|++..++..
T Consensus       423 ~iek---~p~Lr~~i-----i~~l~~~~~~irS~ki~rgalwi~GeYce~  464 (948)
T KOG1058|consen  423 AIEK---FPNLRASI-----IEKLLETFPQIRSSKICRGALWILGEYCEG  464 (948)
T ss_pred             HHHh---CchHHHHH-----HHHHHHhhhhhcccccchhHHHHHHHHHhh
Confidence            4422   11222233     455666665567788889999999999865

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=95.92  E-value=0.86  Score=45.81  Aligned_cols=186  Identities=16%  Similarity=0.160  Sum_probs=112.9

Q ss_pred             cHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHh--hhH-HHHHHhcccCCHHHHHHHHHHHHHhhcC---CCcHH
Q 008257           38 LQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVAR--TVG-SCLINIMKSGNMQAREAALKALNQISSC---EPSAK  111 (572)
Q Consensus        38 i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~--~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~---~~~~~  111 (572)
                      +...+..+.+.....|..+...+.++....-....+.+  .-. ..+.+.++.+..+.+..|++++.-++..   .+...
T Consensus        45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~  124 (309)
T PF05004_consen   45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE  124 (309)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence            34445566667778888888888876543333333332  234 8888999988888888888888888754   23445


Q ss_pred             HHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHh---------
Q 008257          112 VLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLIS---------  182 (572)
Q Consensus       112 ~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~---------  182 (572)
                      .+.+ ...|+|.+.+...+   ..+..|..++.+|+-++....+.              ...+..+++.|.         
T Consensus       125 ei~~-~~~~~L~~~l~d~s---~~~~~R~~~~~aLai~~fv~~~d--------------~~~~~~~~~~le~if~~~~~~  186 (309)
T PF05004_consen  125 EIFE-ELKPVLKRILTDSS---ASPKARAACLEALAICTFVGGSD--------------EEETEELMESLESIFLLSILK  186 (309)
T ss_pred             HHHH-HHHHHHHHHHhCCc---cchHHHHHHHHHHHHHHHhhcCC--------------hhHHHHHHHHHHHHHHHHhcC
Confidence            5544 57889999887642   23566677777888776532211              112221112211         


Q ss_pred             c-C---------ChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHc
Q 008257          183 N-T---------GPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNL  244 (572)
Q Consensus       183 ~-~---------~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L  244 (572)
                      . +         ++.+...|+.+-.-|...-.. ..+...+  ...+|.|+.+|++++.+||..|-.+|.-|
T Consensus       187 ~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~-~~~~~~~--~~~~~~l~~lL~s~d~~VRiAAGEaiAll  255 (309)
T PF05004_consen  187 SDGNAPVVAAEDDAALVAAALSAWALLLTTLPD-SKLEDLL--EEALPALSELLDSDDVDVRIAAGEAIALL  255 (309)
T ss_pred             cCCCcccccCCCccHHHHHHHHHHHHHHhcCCH-HHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            1 1         234566665444333332211 1233221  34699999999999999999998877655

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=95.87  E-value=0.084  Score=46.76  Aligned_cols=117  Identities=13%  Similarity=0.198  Sum_probs=87.5

Q ss_pred             hhhccchHHHHHhhcCCC------HhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcC-CHHHHHHHHH
Q 008257          439 LLEGHAVEKLIALLDHTN------EKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKR-TENLQRRAVW  511 (572)
Q Consensus       439 l~~~g~i~~Lv~lL~~~~------~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~-~~~~~~~a~~  511 (572)
                      .+..||+..|+++++++.      .++...++.|+..|..++.    ..|...+..-|..++..++... +..+...|..
T Consensus         7 FI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~----vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa   82 (160)
T PF11841_consen    7 FISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGI----VSWDTLSDSFIKKIASYVNSSAMDASILQRSLA   82 (160)
T ss_pred             HHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCc----CchhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence            468899999999998866      4788889999999998764    1234455556777888885333 5789999999


Q ss_pred             HHHHHHcc-hhhhhhhcCCCCchHHHHHHhhcCCchhHHHHHHHHHhhcc
Q 008257          512 VVERILRT-DDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHIDK  560 (572)
Q Consensus       512 ~l~~l~~~-~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~~  560 (572)
                      +|+++..+ +.....+...-.+ ..|+..|+.++++.+.+|-..+--|..
T Consensus        83 ILEs~Vl~S~~ly~~V~~evt~-~~Li~hLq~~~~~iq~naiaLinAL~~  131 (160)
T PF11841_consen   83 ILESIVLNSPKLYQLVEQEVTL-ESLIRHLQVSNQEIQTNAIALINALFL  131 (160)
T ss_pred             HHHHHHhCCHHHHHHHhccCCH-HHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence            99999965 4444555554444 489999999999999888766655443

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=95.74  E-value=0.28  Score=54.32  Aligned_cols=167  Identities=14%  Similarity=0.134  Sum_probs=113.5

Q ss_pred             hcCCCHHHHHHHH-HHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhC
Q 008257          226 VEAPQNDLRLASI-ELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDE  304 (572)
Q Consensus       226 L~~~~~~v~~~a~-~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~  304 (572)
                      +.+++...|..|+ ++++.++.+++  +. .      ..+.+++...+.+.  +++.----=+.++++..++..-..   
T Consensus        28 l~s~n~~~kidAmK~iIa~M~~G~d--ms-s------Lf~dViK~~~trd~--ElKrL~ylYl~~yak~~P~~~lLa---   93 (757)
T COG5096          28 LESSNDYKKIDAMKKIIAQMSLGED--MS-S------LFPDVIKNVATRDV--ELKRLLYLYLERYAKLKPELALLA---   93 (757)
T ss_pred             ccccChHHHHHHHHHHHHHHhcCCC--hH-H------HHHHHHHHHHhcCH--HHHHHHHHHHHHHhccCHHHHHHH---
Confidence            5666666666666 57888876643  32 1      34566676665553  666655555666777666442211   


Q ss_pred             CChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHH
Q 008257          305 GAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATA  384 (572)
Q Consensus       305 g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~a  384 (572)
                        +..+.+=+++          .++.++..|+.+++.+-     .++....     +++++.++++++ ++.||+.||-|
T Consensus        94 --vNti~kDl~d----------~N~~iR~~AlR~ls~l~-----~~el~~~-----~~~~ik~~l~d~-~ayVRk~Aala  150 (757)
T COG5096          94 --VNTIQKDLQD----------PNEEIRGFALRTLSLLR-----VKELLGN-----IIDPIKKLLTDP-HAYVRKTAALA  150 (757)
T ss_pred             --HHHHHhhccC----------CCHHHHHHHHHHHHhcC-----hHHHHHH-----HHHHHHHHccCC-cHHHHHHHHHH
Confidence              2222222222          36778888888887764     5555443     579999999999 99999999999


Q ss_pred             HHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHH
Q 008257          385 LENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASL  464 (572)
Q Consensus       385 L~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~  464 (572)
                      +..+-.-+++.                                           ..+.|.+.-+..++.+++|.|..+|+
T Consensus       151 v~kly~ld~~l-------------------------------------------~~~~g~~~~l~~l~~D~dP~Vi~nAl  187 (757)
T COG5096         151 VAKLYRLDKDL-------------------------------------------YHELGLIDILKELVADSDPIVIANAL  187 (757)
T ss_pred             HHHHHhcCHhh-------------------------------------------hhcccHHHHHHHHhhCCCchHHHHHH
Confidence            99886533211                                           23678888999999999999999999


Q ss_pred             HHHHHhhh
Q 008257          465 AALSTVID  472 (572)
Q Consensus       465 ~aL~~l~~  472 (572)
                      .+|..+--
T Consensus       188 ~sl~~i~~  195 (757)
T COG5096         188 ASLAEIDP  195 (757)
T ss_pred             HHHHHhch
Confidence            99998853

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=95.58  E-value=0.27  Score=51.31  Aligned_cols=134  Identities=7%  Similarity=-0.024  Sum_probs=103.7

Q ss_pred             HHHHHHHhhccC-cchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhcc-CcchhHHHHhhhH-HHHHHhcccCCH
Q 008257           14 KAEKTLANLEKC-ENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLAL-NSDVKVLVARTVG-SCLINIMKSGNM   90 (572)
Q Consensus        14 ~A~~~L~~L~~~-~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~-~~~~k~~i~~~g~-~~Lv~lL~s~~~   90 (572)
                      .++..|..++.+ .--+.-+.++...++|++.|+.+...++.-+...+.+... -+.-+..+.+.|+ ..|++++.+.+.
T Consensus       408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDd  487 (743)
T COG5369         408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDD  487 (743)
T ss_pred             HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchh
Confidence            345666666653 3335567788889999999998766666667788888776 4555667777788 999999999888


Q ss_pred             HHHHHHHHHHHHhhcCCCcH--HHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhc
Q 008257           91 QAREAALKALNQISSCEPSA--KVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNS  152 (572)
Q Consensus        91 ~~~~~A~~aL~~Ls~~~~~~--~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~  152 (572)
                      ..|.+..|.|+.+..++++.  -.....-|+..++.+...     +.-.+|++...+|.|+..+
T Consensus       488 aLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~ND-----pc~~vq~q~lQilrNftc~  546 (743)
T COG5369         488 ALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTND-----PCFKVQHQVLQILRNFTCD  546 (743)
T ss_pred             hhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcC-----cccccHHHHHHHHHhcccc
Confidence            99999999999999887664  344577788888888754     3478999999999999764

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.57  E-value=4.8  Score=44.34  Aligned_cols=361  Identities=16%  Similarity=0.183  Sum_probs=195.1

Q ss_pred             cCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCcc
Q 008257           87 SGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQ  166 (572)
Q Consensus        87 s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~  166 (572)
                      +.+.-+|-+|++.|..+-.++.-        ++..|+..+..+.   . .  -..|-|.+-.++...       ++++. 
T Consensus       183 s~~~m~QyHalglLyqirk~drl--------a~sklv~~~~~~~---~-~--~~~A~~~lir~~~~~-------l~~~~-  240 (865)
T KOG1078|consen  183 SDNIMVQYHALGLLYQIRKNDRL--------AVSKLVQKFTRGS---L-K--SPLAVCMLIRIASEL-------LKENQ-  240 (865)
T ss_pred             cHHHHHHHHHHHHHHHHHhhhHH--------HHHHHHHHHcccc---c-c--chhHHHHHHHHHHHH-------hhhcc-
Confidence            34446677888888877654432        3344455444321   0 0  113444444444321       11110 


Q ss_pred             ccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 008257          167 TLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSP  246 (572)
Q Consensus       167 ~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~  246 (572)
                       .......+-+=+.+++.+.-+...+++++.++..-..     +..   ..++..|-.+|.++...+|-.|.++|..++.
T Consensus       241 -~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~-----r~l---~pavs~Lq~flssp~~~lRfaAvRtLnkvAm  311 (865)
T KOG1078|consen  241 -QADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNS-----REL---APAVSVLQLFLSSPKVALRFAAVRTLNKVAM  311 (865)
T ss_pred             -cchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCH-----hhc---chHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence             0111223334455566777888899999998876532     222   2378888889999999999999999999985


Q ss_pred             CCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCc
Q 008257          247 HMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSR  326 (572)
Q Consensus       247 ~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~  326 (572)
                      ..++.+  ..+     =.-|=.+....+.  .+-..|..+|..  .+.......++     .++..+..+-.. +     
T Consensus       312 ~~P~~v--~~c-----N~elE~lItd~Nr--sIat~AITtLLK--TG~e~sv~rLm-----~qI~~fv~disD-e-----  369 (865)
T KOG1078|consen  312 KHPQAV--TVC-----NLDLESLITDSNR--SIATLAITTLLK--TGTESSVDRLM-----KQISSFVSDISD-E-----  369 (865)
T ss_pred             hCCccc--ccc-----chhHHhhhccccc--chhHHHHHHHHH--hcchhHHHHHH-----HHHHHHHHhccc-c-----
Confidence            434332  111     1223333333332  344445554433  22333333332     233333333111 1     


Q ss_pred             chhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCC
Q 008257          327 FVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGF  406 (572)
Q Consensus       327 ~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~  406 (572)
                       ..-+.-.++.+|+...      |.     ...+.++.|-.+|+..+..+-|+...-++-.+....+..           
T Consensus       370 -FKivvvdai~sLc~~f------p~-----k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pds-----------  426 (865)
T KOG1078|consen  370 -FKIVVVDAIRSLCLKF------PR-----KHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDS-----------  426 (865)
T ss_pred             -ceEEeHHHHHHHHhhc------cH-----HHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcch-----------
Confidence             1112234555555332      22     223557788888887657778877777777665432211           


Q ss_pred             CccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHh
Q 008257          407 CASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCE  486 (572)
Q Consensus       407 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~  486 (572)
                                                        +.-++..|+....+  -+-..-+.+.|..|-.+++.      ....
T Consensus       427 ----------------------------------Ke~~L~~LCefIED--ce~~~i~~rILhlLG~EgP~------a~~P  464 (865)
T KOG1078|consen  427 ----------------------------------KERGLEHLCEFIED--CEFTQIAVRILHLLGKEGPK------APNP  464 (865)
T ss_pred             ----------------------------------hhHHHHHHHHHHHh--ccchHHHHHHHHHHhccCCC------CCCc
Confidence                                              12255566666543  23344566667766665541      1222


Q ss_pred             cCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcchhhhhhhcCCCCchHHHHHHhhcCCchhHHHHHHHHHhhcc-----c
Q 008257          487 AQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHIDK-----I  561 (572)
Q Consensus       487 ~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~~-----~  561 (572)
                      ..=|..+...+ --.+..++..|+.++.++....+     .-...+...|.+.+.+.|.++|++|.-+|..+..     .
T Consensus       465 skyir~iyNRv-iLEn~ivRaaAv~alaKfg~~~~-----~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~~~~~l~  538 (865)
T KOG1078|consen  465 SKYIRFIYNRV-ILENAIVRAAAVSALAKFGAQDV-----VLLPSILVLLKRCLNDSDDEVRDRATFYLKNLEEKDDVLN  538 (865)
T ss_pred             chhhHHHhhhh-hhhhhhhHHHHHHHHHHHhcCCC-----CccccHHHHHHHHhcCchHHHHHHHHHHHHHhhhhhhhhc
Confidence            33344555444 24667778888888888872211     1122344467778888999999999999988872     3


Q ss_pred             CCCCCCCCCC
Q 008257          562 PNFSGIFPNM  571 (572)
Q Consensus       562 ~~~s~~~~~~  571 (572)
                      ..++.+|.++
T Consensus       539 ~~~~~l~~s~  548 (865)
T KOG1078|consen  539 QNYSGLFVSI  548 (865)
T ss_pred             cccccccccc
Confidence            3335555543

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=95.45  E-value=0.16  Score=52.16  Aligned_cols=113  Identities=14%  Similarity=0.219  Sum_probs=67.8

Q ss_pred             CCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcchhhhhhhcCCCC-ch
Q 008257          455 TNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPN-VS  533 (572)
Q Consensus       455 ~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~-~~  533 (572)
                      .+.+|...|.++|+|+.+--...++........|.+..+.......+.-.+|=++..++.|++.++...-+-..-++ +-
T Consensus       496 d~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F  575 (728)
T KOG4535|consen  496 DKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAF  575 (728)
T ss_pred             hhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHH
Confidence            45789999999999998531111111111112233333322221245567888999999999988654222111112 22


Q ss_pred             HHHHHHhhc-CCchhHHHHHHHHHhhcccCCCCCC
Q 008257          534 TALVDAFQH-ADYRTRQIAERALKHIDKIPNFSGI  567 (572)
Q Consensus       534 ~~Lv~ll~~-~~~~~~~~Aa~aL~~L~~~~~~s~~  567 (572)
                      ..|..|+.+ .+..+|..||.+|..-..--.++.-
T Consensus       576 ~~L~~Lv~~~~NFKVRi~AA~aL~vp~~re~~~d~  610 (728)
T KOG4535|consen  576 NALTSLVTSCKNFKVRIRAAAALSVPGKREQYGDQ  610 (728)
T ss_pred             HHHHHHHHHhccceEeehhhhhhcCCCCcccchhH
Confidence            578888865 6789999999999987765544433

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=95.44  E-value=0.53  Score=44.39  Aligned_cols=145  Identities=14%  Similarity=0.180  Sum_probs=98.1

Q ss_pred             HHHHHHHHHhccCcchhHHHHhhhH-HHHHHhccc-----CCHHHHHHHHHHHHHhhcCCCc--HHHHHHcCChHHHHHH
Q 008257           54 LSLAAFLGDLALNSDVKVLVARTVG-SCLINIMKS-----GNMQAREAALKALNQISSCEPS--AKVLIHAGILPPLVKD  125 (572)
Q Consensus        54 ~~aa~~L~~l~~~~~~k~~i~~~g~-~~Lv~lL~s-----~~~~~~~~A~~aL~~Ls~~~~~--~~~iv~~G~i~~Lv~l  125 (572)
                      .++...|+.++.+.+.|..+.+.-+ --|..+|..     .++..|-.+++++..|..+++.  ...+...++||..++.
T Consensus        97 cnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLri  176 (293)
T KOG3036|consen   97 CNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRI  176 (293)
T ss_pred             HHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHH
Confidence            5677788888999999988877766 334455542     3456789999999999986554  5667799999999999


Q ss_pred             HhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHH-HHHhcCChhHHHHHHHHHHHccCCCC
Q 008257          126 LFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLL-HLISNTGPTIECKLLQVLVGLTSSPT  204 (572)
Q Consensus       126 L~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv-~lL~~~~~~~q~~a~~aL~~l~~~~~  204 (572)
                      ...++     ...|-.|+.++..+-.++.+..=.+...+ ....-..++..++ .+.+.+++.+-.+++|+..+|+.++.
T Consensus       177 me~GS-----elSKtvA~fIlqKIlldD~GL~YiCqt~e-RF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnpr  250 (293)
T KOG3036|consen  177 MESGS-----ELSKTVATFILQKILLDDVGLYYICQTAE-RFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPR  250 (293)
T ss_pred             Hhccc-----HHHHHHHHHHHHHHhhccccHHHHHHhHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHH
Confidence            98763     66788888888888654432110000000 0111122333333 33345788888999999999999874

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.40  E-value=1.8  Score=47.44  Aligned_cols=282  Identities=13%  Similarity=0.101  Sum_probs=146.6

Q ss_pred             HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCc
Q 008257           79 SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDS  158 (572)
Q Consensus        79 ~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~  158 (572)
                      +.|=.+|++...-+.-.|++++.+|...  +.+.+..  ++..|=-+|+++.     ..+|-.|..+|..+|+-.+.-..
T Consensus       248 ~fl~s~l~~K~emV~~EaArai~~l~~~--~~r~l~p--avs~Lq~flssp~-----~~lRfaAvRtLnkvAm~~P~~v~  318 (865)
T KOG1078|consen  248 PFLESCLRHKSEMVIYEAARAIVSLPNT--NSRELAP--AVSVLQLFLSSPK-----VALRFAAVRTLNKVAMKHPQAVT  318 (865)
T ss_pred             HHHHHHHhchhHHHHHHHHHHHhhcccc--CHhhcch--HHHHHHHHhcCcH-----HHHHHHHHHHHHHHHHhCCcccc
Confidence            4455566777778888888888887642  2223322  6666666777653     78899999999999875432110


Q ss_pred             cccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHH
Q 008257          159 ITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASI  238 (572)
Q Consensus       159 ~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~  238 (572)
                                   -+=..|-.++...+..+-..|+.+|+.-....     ....+  ..-|+..+.=+..+...+..+|.
T Consensus       319 -------------~cN~elE~lItd~NrsIat~AITtLLKTG~e~-----sv~rL--m~qI~~fv~disDeFKivvvdai  378 (865)
T KOG1078|consen  319 -------------VCNLDLESLITDSNRSIATLAITTLLKTGTES-----SVDRL--MKQISSFVSDISDEFKIVVVDAI  378 (865)
T ss_pred             -------------ccchhHHhhhcccccchhHHHHHHHHHhcchh-----HHHHH--HHHHHHHHHhccccceEEeHHHH
Confidence                         01122333344444444445555554433221     11111  11233444333333334444444


Q ss_pred             HHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhc
Q 008257          239 ELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQ  318 (572)
Q Consensus       239 ~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~  318 (572)
                      ++|...-   +..      .. +.+..|-++|..+... +.+...+-+|..+....++.+     +-++..|..++.+..
T Consensus       379 ~sLc~~f---p~k------~~-~~m~FL~~~Lr~eGg~-e~K~aivd~Ii~iie~~pdsK-----e~~L~~LCefIEDce  442 (865)
T KOG1078|consen  379 RSLCLKF---PRK------HT-VMMNFLSNMLREEGGF-EFKRAIVDAIIDIIEENPDSK-----ERGLEHLCEFIEDCE  442 (865)
T ss_pred             HHHHhhc---cHH------HH-HHHHHHHHHHHhccCc-hHHHHHHHHHHHHHHhCcchh-----hHHHHHHHHHHHhcc
Confidence            4443322   211      11 4456677777665542 555555666555544344443     245566666665521


Q ss_pred             cCCCCCCcchhhHHHHHHHHHHHHhc--cCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccC
Q 008257          319 LGETRGSRFVTPFLEGLLSVLARVTF--VLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLT  396 (572)
Q Consensus       319 ~~~~~~~~~~~~~~e~a~~aL~~l~~--~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~  396 (572)
                                  ..+-+...|..+..  +-+.+|..        .+......+-=. +..++..|..||..+....... 
T Consensus       443 ------------~~~i~~rILhlLG~EgP~a~~Psk--------yir~iyNRviLE-n~ivRaaAv~alaKfg~~~~~l-  500 (865)
T KOG1078|consen  443 ------------FTQIAVRILHLLGKEGPKAPNPSK--------YIRFIYNRVILE-NAIVRAAAVSALAKFGAQDVVL-  500 (865)
T ss_pred             ------------chHHHHHHHHHHhccCCCCCCcch--------hhHHHhhhhhhh-hhhhHHHHHHHHHHHhcCCCCc-
Confidence                        12334444443321  00012221        111111111112 4568888888998886322211 


Q ss_pred             CCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhh
Q 008257          397 KLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVI  471 (572)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~  471 (572)
                                                                  .....-.|.+++.+.+++|++.|..+|..+-
T Consensus       501 --------------------------------------------~~sI~vllkRc~~D~DdevRdrAtf~l~~l~  531 (865)
T KOG1078|consen  501 --------------------------------------------LPSILVLLKRCLNDSDDEVRDRATFYLKNLE  531 (865)
T ss_pred             --------------------------------------------cccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence                                                        0113446778889999999999999998886

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=95.19  E-value=2  Score=43.15  Aligned_cols=206  Identities=17%  Similarity=0.143  Sum_probs=115.0

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCC--CChh
Q 008257          174 VHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPH--MGHE  251 (572)
Q Consensus       174 i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~--~~~~  251 (572)
                      +...+..+.......++.++..+..+.......+.+...  ..-.+..+.+.++.+..+-+..|++++..++-.  .+.+
T Consensus        45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~--~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~  122 (309)
T PF05004_consen   45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDR--RETLLDALLKSLKKGKSEEQALAARALALLALTLGAGED  122 (309)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHH--HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCcc
Confidence            444555555667888899998888766443221122111  123467777888877766677888888777633  2233


Q ss_pred             HHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHH---hcCCCCcHHHHHHHHhCCChHHHH--HHHhhhccCC--CCC
Q 008257          252 LADALRGAVGQLGSLIRVISENVGISKEQAAAVGLL---AELPERDLGLTRQMLDEGAFGLIF--SRVKSIQLGE--TRG  324 (572)
Q Consensus       252 ~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L---~~L~~~~~~~~~~l~~~g~l~~Lv--~lL~~~~~~~--~~~  324 (572)
                      . +.+.+  ...|.|.+.+..+......+..++.+|   .-+...+.+-.....  ..+..+.  ..++.  .|.  .-.
T Consensus       123 ~-~ei~~--~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~--~~le~if~~~~~~~--~~~~~~~~  195 (309)
T PF05004_consen  123 S-EEIFE--ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELM--ESLESIFLLSILKS--DGNAPVVA  195 (309)
T ss_pred             H-HHHHH--HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHH--HHHHHHHHHHhcCc--CCCccccc
Confidence            2 24444  367889998886654234554444343   333333333222111  1223221  12221  111  111


Q ss_pred             CcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhc
Q 008257          325 SRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLES  392 (572)
Q Consensus       325 ~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~  392 (572)
                      ......+...|+.++.-+...+ .+.... ... ...+|.|+++|.++ +..||..|..+|+-+....
T Consensus       196 ~~~~~~l~~aAL~aW~lLlt~~-~~~~~~-~~~-~~~~~~l~~lL~s~-d~~VRiAAGEaiAll~E~~  259 (309)
T PF05004_consen  196 AEDDAALVAAALSAWALLLTTL-PDSKLE-DLL-EEALPALSELLDSD-DVDVRIAAGEAIALLYELA  259 (309)
T ss_pred             CCCccHHHHHHHHHHHHHHhcC-CHHHHH-HHH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHh
Confidence            1224566777777766555431 122233 222 33589999999999 9999999999998776543

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=95.17  E-value=0.5  Score=52.40  Aligned_cols=166  Identities=11%  Similarity=0.142  Sum_probs=97.4

Q ss_pred             HccCCHHHHHHHHH-HHHHhccCcchhHHHHhhhHHHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHH
Q 008257           45 ILEGPQETKLSLAA-FLGDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLV  123 (572)
Q Consensus        45 L~~~~~~~~~~aa~-~L~~l~~~~~~k~~i~~~g~~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv  123 (572)
                      |.+++...|+.|.. .+..|...++.-..     .|.+++...+.+.++++-.--=|.+.+...+....+    +++.+.
T Consensus        28 l~s~n~~~kidAmK~iIa~M~~G~dmssL-----f~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL----avNti~   98 (757)
T COG5096          28 LESSNDYKKIDAMKKIIAQMSLGEDMSSL-----FPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL----AVNTIQ   98 (757)
T ss_pred             ccccChHHHHHHHHHHHHHHhcCCChHHH-----HHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH----HHHHHH
Confidence            55566666777663 34555554441111     155666555677777777666666666655533222    344455


Q ss_pred             HHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCC
Q 008257          124 KDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSP  203 (572)
Q Consensus       124 ~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~  203 (572)
                      +=|.++     ++.+|..|..+++.|=..               =....+++++.+++.++.+.++..|+-++..+=+-.
T Consensus        99 kDl~d~-----N~~iR~~AlR~ls~l~~~---------------el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld  158 (757)
T COG5096          99 KDLQDP-----NEEIRGFALRTLSLLRVK---------------ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD  158 (757)
T ss_pred             hhccCC-----CHHHHHHHHHHHHhcChH---------------HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC
Confidence            545432     367777777766655210               012345667777777777777777777766664332


Q ss_pred             CccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 008257          204 TTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLS  245 (572)
Q Consensus       204 ~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls  245 (572)
                            .....+.|.+..+..++...+|.+..+|+.+|..+-
T Consensus       159 ------~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~  194 (757)
T COG5096         159 ------KDLYHELGLIDILKELVADSDPIVIANALASLAEID  194 (757)
T ss_pred             ------HhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhc
Confidence                  123345666777777777777777777777776664

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=95.06  E-value=0.52  Score=45.24  Aligned_cols=154  Identities=14%  Similarity=0.185  Sum_probs=102.0

Q ss_pred             CCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHh-------hhccCCC---ChHHHHHHHHHHhcCCCCcHHHH
Q 008257          229 PQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIR-------VISENVG---ISKEQAAAVGLLAELPERDLGLT  298 (572)
Q Consensus       229 ~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~-------lL~~~~~---~~~~~~~A~~~L~~L~~~~~~~~  298 (572)
                      -+++.|+.|+.-|+.-.+. -++.+-.+..+.|.+..|++       .+..++-   .+.--..|+..+..++. +++.+
T Consensus         7 ~~~~~Re~Al~eLsk~r~~-~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr   84 (262)
T PF04078_consen    7 CNPETRENALLELSKKRES-FPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETR   84 (262)
T ss_dssp             SSHHHHHHHHHHHHHTCCC--TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTH
T ss_pred             cCcchHHHHHHHHHHhhhc-ccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHH
Confidence            3567788876666554432 23454456666566655533       2333220   01233567777777777 77888


Q ss_pred             HHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHH
Q 008257          299 RQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQ  378 (572)
Q Consensus       299 ~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk  378 (572)
                      ..|+++...-.|.-+|....  +   .+..+-++=..+|.++.+...  +|++....+.+..++|.-...++.+ ++..|
T Consensus        85 ~~Fl~a~iplyLyPfL~tt~--k---~r~~E~LRLtsLGVIgaLvK~--d~~evi~fLl~tEiiplcLr~me~G-selSK  156 (262)
T PF04078_consen   85 MPFLKAHIPLYLYPFLNTTS--K---TRPFEYLRLTSLGVIGALVKT--DDPEVISFLLQTEIIPLCLRIMEFG-SELSK  156 (262)
T ss_dssp             HHHHHTTGGGGGHHHHH---------SHHHHHHHHHHHHHHHHHHTT----HHHHHHHHCTTHHHHHHHHHHHS--HHHH
T ss_pred             HHHHHcCchhhehhhhhccc--c---ccccchhhHhHHHHHHHHHcC--CcHHHHHHHHhhchHHHHHHHHHhc-cHHHH
Confidence            99999999988888887522  1   123455555678888877766  7999999999999999999999998 99999


Q ss_pred             HHHHHHHHHhhhhc
Q 008257          379 MVSATALENLSLES  392 (572)
Q Consensus       379 ~~Aa~aL~~ls~~~  392 (572)
                      ..|...+..+-.++
T Consensus       157 tvAtfIlqKIL~dd  170 (262)
T PF04078_consen  157 TVATFILQKILLDD  170 (262)
T ss_dssp             HHHHHHHHHHHHSH
T ss_pred             HHHHHHHHHHHcch
Confidence            99999888775543

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=94.89  E-value=0.042  Score=34.27  Aligned_cols=29  Identities=21%  Similarity=0.358  Sum_probs=25.6

Q ss_pred             chHHHHHHhccCCcHHHHHHHHHHHHHhhh
Q 008257          361 LAALFIELLQSNGLDKVQMVSATALENLSL  390 (572)
Q Consensus       361 ~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~  390 (572)
                      ++|.++++++++ +++||..|+.+|..++.
T Consensus         1 llp~l~~~l~D~-~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    1 LLPILLQLLNDP-SPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHHT-S-SHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCC-CHHHHHHHHHHHHHHHh
Confidence            379999999999 99999999999999875

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=94.80  E-value=0.086  Score=44.27  Aligned_cols=69  Identities=13%  Similarity=0.192  Sum_probs=51.8

Q ss_pred             CcHHHHHHHccC-CHHHHHHHHHHHHHhcc-CcchhHHHHhhhH-HHHHHhcccCCHHHHHHHHHHHHHhhc
Q 008257           37 RLQPLLTQILEG-PQETKLSLAAFLGDLAL-NSDVKVLVARTVG-SCLINIMKSGNMQAREAALKALNQISS  105 (572)
Q Consensus        37 ~i~~Lv~~L~~~-~~~~~~~aa~~L~~l~~-~~~~k~~i~~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~  105 (572)
                      .+..|+++|..+ ++.+..-|+.-|+.++. .+..|..+.+.|+ ..+.++|.+++++++..|+.|+..|..
T Consensus        44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~  115 (119)
T PF11698_consen   44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV  115 (119)
T ss_dssp             HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            467888999543 34444445666888776 6677778878899 999999999999999999999988764

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=94.66  E-value=10  Score=43.08  Aligned_cols=55  Identities=20%  Similarity=0.225  Sum_probs=44.2

Q ss_pred             HHhhhH-HHHHHhccc-----CCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHh
Q 008257           73 VARTVG-SCLINIMKS-----GNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLF  127 (572)
Q Consensus        73 i~~~g~-~~Lv~lL~s-----~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~  127 (572)
                      +.+.|| ..|+.+|.+     ...+.-...++.|...+.-..||+.+++.|+|+.|++.|.
T Consensus       113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~  173 (802)
T PF13764_consen  113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLN  173 (802)
T ss_pred             hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHH
Confidence            345677 999999976     2345556678888888888999999999999999999885

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=94.64  E-value=0.86  Score=43.07  Aligned_cols=101  Identities=22%  Similarity=0.297  Sum_probs=80.9

Q ss_pred             HHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCC-----CHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChh
Q 008257          190 CKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAP-----QNDLRLASIELIQNLSPHMGHELADALRGAVGQLG  264 (572)
Q Consensus       190 ~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~-----~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~  264 (572)
                      .+++..|..+++.++    .|..+.++..--.|..+|...     .+.+|-.++..+..|.+.++.++...+... +.+|
T Consensus        97 cnaL~LlQcvASHpd----Tr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~T-eIVP  171 (293)
T KOG3036|consen   97 CNALALLQCVASHPD----TRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTT-EIVP  171 (293)
T ss_pred             HHHHHHHHHHhcCcc----hHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHh-hhHH
Confidence            467777888888875    578888888877888888532     357899999999999988778887788777 8999


Q ss_pred             hHHhhhccCCCChHHHHHHHHHHhcCCCCcHHH
Q 008257          265 SLIRVISENVGISKEQAAAVGLLAELPERDLGL  297 (572)
Q Consensus       265 ~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~  297 (572)
                      ..++.++.++.  .-+..|..++..+-.+|...
T Consensus       172 lCLrime~GSe--lSKtvA~fIlqKIlldD~GL  202 (293)
T KOG3036|consen  172 LCLRIMESGSE--LSKTVATFILQKILLDDVGL  202 (293)
T ss_pred             HHHHHHhcccH--HHHHHHHHHHHHHhhccccH
Confidence            99999999995  77888888888776644433

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.62  E-value=2.2  Score=46.98  Aligned_cols=241  Identities=15%  Similarity=0.015  Sum_probs=138.3

Q ss_pred             CcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHH-HHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCCh
Q 008257          108 PSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILA-NVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGP  186 (572)
Q Consensus       108 ~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~-nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~  186 (572)
                      .-+...|..|+...|.++.....     ...+..+..+|. .+...  ++            ....+++++...+.+...
T Consensus       495 ~~~~~~Ik~~~~~aLlrl~~~q~-----e~akl~~~~aL~~~i~f~--~~------------~~~~v~~~~~s~~~~d~~  555 (748)
T KOG4151|consen  495 YERAKKIKPGGYEALLRLGQQQF-----EEAKLKWYHALAGKIDFP--GE------------RSYEVVKPLDSALHNDEK  555 (748)
T ss_pred             HhcCccccccHHHHHHHHHHHhc-----hHHHHHHHHHHhhhcCCC--CC------------chhhhhhhhcchhhhhHH
Confidence            33566789999999999988753     567777777777 22111  01            123466666666654332


Q ss_pred             hH-HHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhh
Q 008257          187 TI-ECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGS  265 (572)
Q Consensus       187 ~~-q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~  265 (572)
                      -. ...++.+|.+|++.++   ..+..|.+.-+++.+-+++-..++..|..++..+.||.-+. --+.+.+.+....++.
T Consensus       556 ~~en~E~L~altnLas~s~---s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~-~~~e~si~e~~~~l~~  631 (748)
T KOG4151|consen  556 GLENFEALEALTNLASISE---SDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSP-LLYERSIVEYKDRLKL  631 (748)
T ss_pred             HHHHHHHHHHhhcccCcch---hhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhH-HHHHHHhhccccCchH
Confidence            22 2367788888887664   35666777777777777777788889999999999998662 2222344442245666


Q ss_pred             HHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHH-HHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhc
Q 008257          266 LIRVISENVGISKEQAAAVGLLAELPERDLGLTR-QMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTF  344 (572)
Q Consensus       266 Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~-~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~  344 (572)
                      ....+.....  ....++++.+.-++..+.+++. ..--......++.++.+..          .+++..-+...+++..
T Consensus       632 w~~~~e~~~E--~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~----------~~~qhrgl~~~ln~~~  699 (748)
T KOG4151|consen  632 WNLNLEVADE--KFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDED----------DEIQHRGLVIILNLFE  699 (748)
T ss_pred             HHHHHHhhhh--HHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCch----------hhhhhhhhhhhhhHHH
Confidence            6666666442  5566666666545443444433 3333466677777776532          2233333333333322


Q ss_pred             cCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHH
Q 008257          345 VLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALEN  387 (572)
Q Consensus       345 ~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~  387 (572)
                      .   ..+....+.....++.+..+-... -...++.++.+|..
T Consensus       700 ~---~~ei~~~~~~~~~~~~l~~~~~~~-~a~~~~~~~~~l~~  738 (748)
T KOG4151|consen  700 A---LFEIAEKIFETEVMELLSGLQKLN-RAPKREDAAPCLSA  738 (748)
T ss_pred             H---HHHHHHHhccchHHHHHHHHHHhh-hhhhhhhhhhHHHH
Confidence            1   334444444445555544332222 33455555555543

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=94.48  E-value=4.8  Score=38.67  Aligned_cols=90  Identities=13%  Similarity=0.135  Sum_probs=63.8

Q ss_pred             hhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHH
Q 008257          263 LGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARV  342 (572)
Q Consensus       263 l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l  342 (572)
                      |..|++=|.-++.  -.|..++.+++.|-+           .-+||.|...|.+.+        +++-++..|+.||..+
T Consensus       189 I~al~~~l~~~Sa--lfrhEvAfVfGQl~s-----------~~ai~~L~k~L~d~~--------E~pMVRhEaAeALGaI  247 (289)
T KOG0567|consen  189 INALIDGLADDSA--LFRHEVAFVFGQLQS-----------PAAIPSLIKVLLDET--------EHPMVRHEAAEALGAI  247 (289)
T ss_pred             HHHHHHhcccchH--HHHHHHHHHHhhccc-----------hhhhHHHHHHHHhhh--------cchHHHHHHHHHHHhh
Confidence            4455555555543  677888888877643           245788888888632        3566677799999888


Q ss_pred             hccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHh
Q 008257          343 TFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENL  388 (572)
Q Consensus       343 ~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~l  388 (572)
                      +     |++.         ++.|.+.+.++ .+-+++.+..+|.-+
T Consensus       248 a-----~e~~---------~~vL~e~~~D~-~~vv~esc~valdm~  278 (289)
T KOG0567|consen  248 A-----DEDC---------VEVLKEYLGDE-ERVVRESCEVALDML  278 (289)
T ss_pred             c-----CHHH---------HHHHHHHcCCc-HHHHHHHHHHHHHHH
Confidence            7     5654         46778888888 888998888887543

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=94.40  E-value=2  Score=43.07  Aligned_cols=169  Identities=17%  Similarity=0.143  Sum_probs=109.4

Q ss_pred             CCcHHHH-HHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhHHHHHHhcccCCHHHHHHHHHHHHHhhcCCCcH--HH
Q 008257           36 GRLQPLL-TQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSA--KV  112 (572)
Q Consensus        36 g~i~~Lv-~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~--~~  112 (572)
                      +.++.|| .-+++.+..+|..+..+|+-.+.-+.   .++....+.+...++.++..++..|++++..+.......  ..
T Consensus        26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~---~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~  102 (298)
T PF12719_consen   26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK---ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDS  102 (298)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh---HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccc
Confidence            5566666 56788889999999999998877444   444455688888888889999999999999998532211  11


Q ss_pred             -------HHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccch-hhhHHHHHHHHhcC
Q 008257          113 -------LIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVS-EDIVHNLLHLISNT  184 (572)
Q Consensus       113 -------iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~-~~~i~~Lv~lL~~~  184 (572)
                             .-....+..+.+.|.+.     .++++..|++.++.|--++             .+.. ..++..|+-+..++
T Consensus       103 ~~~~~~~~~~~~l~~~l~~~l~~~-----~~~~~~~a~EGl~KLlL~~-------------~i~~~~~vL~~Lll~yF~p  164 (298)
T PF12719_consen  103 ESDNDESVDSKSLLKILTKFLDSE-----NPELQAIAVEGLCKLLLSG-------------RISDPPKVLSRLLLLYFNP  164 (298)
T ss_pred             hhccCccchHhHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHhcC-------------CCCcHHHHHHHHHHHHcCc
Confidence                   11244566777777653     3789999999999987643             2344 56777777666543


Q ss_pred             ----ChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCC
Q 008257          185 ----GPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAP  229 (572)
Q Consensus       185 ----~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~  229 (572)
                          +..+++.....+-..+....   +.+ ...+...+|.+-.+.+..
T Consensus       165 ~t~~~~~LrQ~L~~Ffp~y~~s~~---~~Q-~~l~~~f~~~l~~~~~~~  209 (298)
T PF12719_consen  165 STEDNQRLRQCLSVFFPVYASSSP---ENQ-ERLAEAFLPTLRTLSNAP  209 (298)
T ss_pred             ccCCcHHHHHHHHHHHHHHHcCCH---HHH-HHHHHHHHHHHHHHHhCc
Confidence                23444444444445555432   222 233445556665555543

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=94.26  E-value=2.5  Score=43.56  Aligned_cols=252  Identities=13%  Similarity=0.047  Sum_probs=131.0

Q ss_pred             cHHHHHHHc-cCCHHHHHHHHHHHHHhccCcchhHHHHhhhH-HHHHHhccc-CCH-HHHHHHHHHHHHhhcCCCcHHHH
Q 008257           38 LQPLLTQIL-EGPQETKLSLAAFLGDLALNSDVKVLVARTVG-SCLINIMKS-GNM-QAREAALKALNQISSCEPSAKVL  113 (572)
Q Consensus        38 i~~Lv~~L~-~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~Lv~lL~s-~~~-~~~~~A~~aL~~Ls~~~~~~~~i  113 (572)
                      ++.++.-|. ..+..+|+.++-.|..-..+..-+..+...|. ..+++.+.. ++. ..--.++.+++-|+.+..+...+
T Consensus        23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l~  102 (361)
T PF07814_consen   23 VEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHLL  102 (361)
T ss_pred             HHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhhh
Confidence            345555555 34567788888888887788899999999998 999999843 333 33445555666666665556555


Q ss_pred             HHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHh---------cC
Q 008257          114 IHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLIS---------NT  184 (572)
Q Consensus       114 v~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~---------~~  184 (572)
                      -+.+.+..++++|......+........-.   .++.+                 .....+..+-..+.         ..
T Consensus       103 ~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~---~~lsk-----------------~~~~~~~~~~~~~~~~~~~~~~~~~  162 (361)
T PF07814_consen  103 LDRDSLRLLLKLLKVDKSLDVPSDSDSSRK---KNLSK-----------------VQQKSRSLCKELLSSGSSWKSPKPP  162 (361)
T ss_pred             hchhHHHHHHHHhccccccccccchhhhhh---hhhhH-----------------HHHHHHHHHHHHHhccccccccCCc
Confidence            677778888998872100000000000000   00000                 00111111111110         01


Q ss_pred             ChhHHHHHHHHHHHcc-----------CCCCccHHHHHHHHhcCChHHHHHHhcC----C-------CH-----HHHHHH
Q 008257          185 GPTIECKLLQVLVGLT-----------SSPTTVLSVVSAIKSSGATISLVQFVEA----P-------QN-----DLRLAS  237 (572)
Q Consensus       185 ~~~~q~~a~~aL~~l~-----------~~~~~~~~~~~~i~~~g~i~~Lv~lL~~----~-------~~-----~v~~~a  237 (572)
                      ...-+.-++.++..++           ..+...+..++.+++.||+..++..+..    .       ++     ..-..+
T Consensus       163 ~lsp~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~c  242 (361)
T PF07814_consen  163 ELSPQTLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERC  242 (361)
T ss_pred             ccccccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHH
Confidence            1122344455554442           1222234567778899999999999851    1       11     123345


Q ss_pred             HHHHHHcCCCCChhHHHHHhcccCChhhHH-hhhccCCC-ChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHH
Q 008257          238 IELIQNLSPHMGHELADALRGAVGQLGSLI-RVISENVG-ISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGL  309 (572)
Q Consensus       238 ~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv-~lL~~~~~-~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~  309 (572)
                      .++|.+.+-.....-...+....+.++.+. .++....+ .......+++++-|++.+++...+.+...+....
T Consensus       243 l~ILEs~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~  316 (361)
T PF07814_consen  243 LSILESVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQ  316 (361)
T ss_pred             HHHHHHHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccc
Confidence            566666553321111111221112333322 22222221 1245688999999999988777666665544333

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=94.22  E-value=2.2  Score=41.93  Aligned_cols=236  Identities=13%  Similarity=0.124  Sum_probs=144.8

Q ss_pred             CCCCHHHHHHHHHHHHhhccCcchHHHH-HHcCCcHHHHHHHcc--CCHHHHHHHHHHHHHhccCcchhHHHHhh-h-HH
Q 008257            5 KSENLLTVEKAEKTLANLEKCENNVRQM-AENGRLQPLLTQILE--GPQETKLSLAAFLGDLALNSDVKVLVART-V-GS   79 (572)
Q Consensus         5 ~s~~~~~~~~A~~~L~~L~~~~~n~~~i-~~~g~i~~Lv~~L~~--~~~~~~~~aa~~L~~l~~~~~~k~~i~~~-g-~~   79 (572)
                      |+-|+-++-.|...|.+|....+.++.+ +|.-.-..++..++.  |....|..+.-+++-+..+.+..+.|.+. . +.
T Consensus       159 Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~  238 (432)
T COG5231         159 QLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLIN  238 (432)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            4456667788889999999877776544 354455677777764  45677888888888888877766556543 3 37


Q ss_pred             HHHHhcccCC-HHHHHHHHHHHHHhhcCC--CcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCC-
Q 008257           80 CLINIMKSGN-MQAREAALKALNQISSCE--PSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHD-  155 (572)
Q Consensus        80 ~Lv~lL~s~~-~~~~~~A~~aL~~Ls~~~--~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~-  155 (572)
                      .|+++.++.. ..+-+-++..+.|+....  .....+.-.|-+.+-+++|....  =.+.+++..--.+=..|..+... 
T Consensus       239 dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erk--ysDEel~~di~~i~s~l~~~~k~l  316 (432)
T COG5231         239 DLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERK--YSDEELVIDIERIRSRLVQNTKKL  316 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcC--CChHHHHHHHHHHHHHHHhhhhhh
Confidence            8888888754 345677888899988622  34555666777778888886543  11234444433333333222110 


Q ss_pred             ----------------CCccccC-----CCccccch--hhhHHHHHHHHhcCChh-HHHHHHHHHHHccCCCCccHHHHH
Q 008257          156 ----------------FDSITVG-----PDNQTLVS--EDIVHNLLHLISNTGPT-IECKLLQVLVGLTSSPTTVLSVVS  211 (572)
Q Consensus       156 ----------------~~~~~~~-----~~~~~l~~--~~~i~~Lv~lL~~~~~~-~q~~a~~aL~~l~~~~~~~~~~~~  211 (572)
                                      |.....+     ++-..+..  -..+..|.+++++..+. .-.-|+.=+..+....   ++.+.
T Consensus       317 ~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~---PE~~~  393 (432)
T COG5231         317 CIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRAS---PEINA  393 (432)
T ss_pred             hHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhC---chHHH
Confidence                            0000000     00001111  12566777777765554 2222333333333221   24567


Q ss_pred             HHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 008257          212 AIKSSGATISLVQFVEAPQNDLRLASIELIQNLS  245 (572)
Q Consensus       212 ~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls  245 (572)
                      .+...||=..+.+|++++|++++-.|+.++..+.
T Consensus       394 vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i  427 (432)
T COG5231         394 VLSKYGVKEIIMNLINHDDDDVKFEALQALQTCI  427 (432)
T ss_pred             HHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence            7788999999999999999999999999887653

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.20  E-value=0.71  Score=50.65  Aligned_cols=232  Identities=13%  Similarity=0.105  Sum_probs=143.0

Q ss_pred             CChhhHHhhhccCCCChHHHHHHHHHHh-cCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHH
Q 008257          261 GQLGSLIRVISENVGISKEQAAAVGLLA-ELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVL  339 (572)
Q Consensus       261 g~l~~Lv~lL~~~~~~~~~~~~A~~~L~-~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL  339 (572)
                      |+...|.++.....+  ..+..+..+|. .+......      ....++++.+.+...+.+        .+.-| .+-++
T Consensus       504 ~~~~aLlrl~~~q~e--~akl~~~~aL~~~i~f~~~~------~~~v~~~~~s~~~~d~~~--------~en~E-~L~al  566 (748)
T KOG4151|consen  504 GGYEALLRLGQQQFE--EAKLKWYHALAGKIDFPGER------SYEVVKPLDSALHNDEKG--------LENFE-ALEAL  566 (748)
T ss_pred             cHHHHHHHHHHHhch--HHHHHHHHHHhhhcCCCCCc------hhhhhhhhcchhhhhHHH--------HHHHH-HHHHh
Confidence            899999999877764  44544445554 33332211      124567777777653211        11122 66778


Q ss_pred             HHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCc
Q 008257          340 ARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPV  419 (572)
Q Consensus       340 ~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (572)
                      .+++++   +...++.+.++-.++.+-+++... ++..|+.++..+.||..+..-..+.                     
T Consensus       567 tnLas~---s~s~r~~i~ke~~~~~ie~~~~ee-~~~lqraa~e~~~NLl~~~~~~e~s---------------------  621 (748)
T KOG4151|consen  567 TNLASI---SESDRQKILKEKALGKIEELMTEE-NPALQRAALESIINLLWSPLLYERS---------------------  621 (748)
T ss_pred             hcccCc---chhhHHHHHHHhcchhhHHHhhcc-cHHHHHHHHHHHHHHHhhHHHHHHH---------------------
Confidence            888875   555555577777777755565565 7889999999999998765433221                     


Q ss_pred             cccccccccCccCccchhhhhh-ccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHh
Q 008257          420 ITGLCRLHRGLCSLKETFCLLE-GHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLL  498 (572)
Q Consensus       420 ~~~~c~~~~~~~~~~~~~~l~~-~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~  498 (572)
                                         +++ ...++....++...++....++++++..+....+++-.+  ...-..+...++.++ 
T Consensus       622 -------------------i~e~~~~l~~w~~~~e~~~E~~~lA~a~a~a~I~sv~~n~c~~--~~~~~~~~e~~~~~i-  679 (748)
T KOG4151|consen  622 -------------------IVEYKDRLKLWNLNLEVADEKFELAGAGALAAITSVVENHCSR--ILELLEWLEILVRAI-  679 (748)
T ss_pred             -------------------hhccccCchHHHHHHHhhhhHHhhhccccccchhhcchhhhhh--HHHhhcchHHHHHhh-
Confidence                               122 345666677777777777788887777555443322111  333345667788888 


Q ss_pred             hcCCHHHHHHHHHHHHHHHcc-hhhhhhhcCCCCchHHHHHHhhcCCchhHHHHHHHHHh
Q 008257          499 EKRTENLQRRAVWVVERILRT-DDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKH  557 (572)
Q Consensus       499 ~~~~~~~~~~a~~~l~~l~~~-~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~  557 (572)
                      .++++++|.+.+..+.+++.. .++...+.....+. .+..+-.-.-...++.++.+|.-
T Consensus       680 ~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~-~l~~~~~~~~a~~~~~~~~~l~~  738 (748)
T KOG4151|consen  680 QDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVME-LLSGLQKLNRAPKREDAAPCLSA  738 (748)
T ss_pred             cCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHH-HHHHHHHhhhhhhhhhhhhHHHH
Confidence            499999999999888886643 55666666655554 44443333334555566666543

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=93.90  E-value=0.6  Score=45.02  Aligned_cols=97  Identities=15%  Similarity=0.079  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHhcc-CcchhHHHHhhhH-HHHHHhcc-cCCHHHHHHHHHHHHHhhcC-CCcHHHHHHcCChHHHHHHHhc
Q 008257           53 KLSLAAFLGDLAL-NSDVKVLVARTVG-SCLINIMK-SGNMQAREAALKALNQISSC-EPSAKVLIHAGILPPLVKDLFT  128 (572)
Q Consensus        53 ~~~aa~~L~~l~~-~~~~k~~i~~~g~-~~Lv~lL~-s~~~~~~~~A~~aL~~Ls~~-~~~~~~iv~~G~i~~Lv~lL~s  128 (572)
                      ...|...|.-+.+ ++..|..+.+... ..|+++|+ +..+.++.+++.+|..+..+ +.|.+..-+.||+..++.++++
T Consensus       108 i~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~  187 (257)
T PF08045_consen  108 IALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKS  187 (257)
T ss_pred             HHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHcc
Confidence            3445667777776 7788888877766 99999995 46789999999999888765 6677777799999999999997


Q ss_pred             cCCCCCCcchHHHHHHHHHHHHhc
Q 008257          129 VGSNHLPMRLKEVSATILANVVNS  152 (572)
Q Consensus       129 ~~~~~~~~~~~~~aa~~L~nla~~  152 (572)
                      ..   .+.++|-.+.+.|.-....
T Consensus       188 ~~---~~~~~r~K~~EFL~fyl~~  208 (257)
T PF08045_consen  188 KS---TDRELRLKCIEFLYFYLMP  208 (257)
T ss_pred             cc---ccHHHhHHHHHHHHHHHcc
Confidence            64   4578888888888876553

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=93.90  E-value=0.1  Score=32.44  Aligned_cols=28  Identities=21%  Similarity=0.406  Sum_probs=25.1

Q ss_pred             hHHHHHhhcCCCHhHHHHHHHHHHHhhh
Q 008257          445 VEKLIALLDHTNEKVVEASLAALSTVID  472 (572)
Q Consensus       445 i~~Lv~lL~~~~~~v~~~A~~aL~~l~~  472 (572)
                      +|.+++++++++++|+.+|+.+|+.++.
T Consensus         2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    2 LPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            6889999999999999999999999874

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=93.85  E-value=14  Score=41.64  Aligned_cols=411  Identities=12%  Similarity=0.131  Sum_probs=216.6

Q ss_pred             CHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhcc--CcchhHHHHhhhHHHHHHhc
Q 008257            8 NLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLAL--NSDVKVLVARTVGSCLINIM   85 (572)
Q Consensus         8 ~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~--~~~~k~~i~~~g~~~Lv~lL   85 (572)
                      +|.+...+..-+.+.+..-  ....+..+.++.++.+..+....+|..|...+.++..  ++.-  .+...+.+.+++..
T Consensus       250 ~~~Vr~~~a~~l~~~a~~~--~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~--d~~~~~~~~l~~~~  325 (759)
T KOG0211|consen  250 TPMVRRAVASNLGNIAKVL--ESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD--DVVKSLTESLVQAV  325 (759)
T ss_pred             chhhHHHHHhhhHHHHHHH--HHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch--hhhhhhhHHHHHHh
Confidence            3344444444444444321  1256667888888888888888888888887777653  2221  23333449999999


Q ss_pred             ccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCc
Q 008257           86 KSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDN  165 (572)
Q Consensus        86 ~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~  165 (572)
                      +.++..++.........|...=.-  ....---+++...+++..     .-+.+...+.-...++.......       .
T Consensus       326 ~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~-----~~e~r~a~a~~~~~l~~~l~~~~-------~  391 (759)
T KOG0211|consen  326 EDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDE-----EWEVRYAIAKKVQKLACYLNASC-------Y  391 (759)
T ss_pred             cChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcch-----hhhhhHHhhcchHHHhhhcCccc-------c
Confidence            888888877777766666642111  122334567777777642     23445555555555554322100       0


Q ss_pred             cccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCC-CCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHc
Q 008257          166 QTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSS-PTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNL  244 (572)
Q Consensus       166 ~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~-~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L  244 (572)
                      ..+.....+|.+-.+..+.+..++...+.....+.-. +..    +.   -..-.|.+..+++..+++++.+..+.+..+
T Consensus       392 ~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~----~t---i~~llp~~~~~l~de~~~V~lnli~~ls~~  464 (759)
T KOG0211|consen  392 PNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKE----RT---ISELLPLLIGNLKDEDPIVRLNLIDKLSLL  464 (759)
T ss_pred             cccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcC----cC---ccccChhhhhhcchhhHHHHHhhHHHHHHH
Confidence            1122233456665665666666766655555444321 110    00   123466777788888899999988766444


Q ss_pred             CCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCC
Q 008257          245 SPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRG  324 (572)
Q Consensus       245 s~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~  324 (572)
                      -...+..-.+....  .-+|.++.+-....  ...+.+....+..++....   ..+.+.    .+..++..--..    
T Consensus       465 ~~v~~v~g~~~~s~--slLp~i~el~~d~~--wRvr~ail~~ip~la~q~~---~~~~~~----~~~~l~~~~l~d----  529 (759)
T KOG0211|consen  465 EEVNDVIGISTVSN--SLLPAIVELAEDLL--WRVRLAILEYIPQLALQLG---VEFFDE----KLAELLRTWLPD----  529 (759)
T ss_pred             HhccCcccchhhhh--hhhhhhhhhccchh--HHHHHHHHHHHHHHHHhhh---hHHhhH----HHHHHHHhhhhh----
Confidence            22111000011222  34566666544332  2555555555544443211   112221    122222210000    


Q ss_pred             CcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCC
Q 008257          325 SRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPS  404 (572)
Q Consensus       325 ~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~  404 (572)
                        ..-++.++|+..+..++..+..+...+      -.+|.+......+ +-..|...+.++..++.--+           
T Consensus       530 --~v~~Ir~~aa~~l~~l~~~~G~~w~~~------~~i~k~L~~~~q~-~y~~R~t~l~si~~la~v~g-----------  589 (759)
T KOG0211|consen  530 --HVYSIREAAARNLPALVETFGSEWARL------EEIPKLLAMDLQD-NYLVRMTTLFSIHELAEVLG-----------  589 (759)
T ss_pred             --hHHHHHHHHHHHhHHHHHHhCcchhHH------HhhHHHHHHhcCc-ccchhhHHHHHHHHHHHHhc-----------
Confidence              234566777666666553211122222      2356666665555 56667666677665543111           


Q ss_pred             CCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHH
Q 008257          405 GFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVL  484 (572)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i  484 (572)
                                                    +  .+....-+|++.++..++.+.|+-.++..|..+...-.      ...
T Consensus       590 ------------------------------~--ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~------~~~  631 (759)
T KOG0211|consen  590 ------------------------------Q--EITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLD------ESV  631 (759)
T ss_pred             ------------------------------c--HHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcc------hHH
Confidence                                          0  12344577888888888888999888888887764211      011


Q ss_pred             HhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 008257          485 CEAQGIKPILDVLLEKRTENLQRRAVWVVERIL  517 (572)
Q Consensus       485 ~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~  517 (572)
                      .+ +-|.++.+.|...++-..+-.|.-++..+.
T Consensus       632 ~~-~~v~pll~~L~~d~~~dvr~~a~~a~~~i~  663 (759)
T KOG0211|consen  632 RD-EEVLPLLETLSSDQELDVRYRAILAFGSIE  663 (759)
T ss_pred             HH-HHHHHHHHHhccCcccchhHHHHHHHHHHH
Confidence            12 224455555545666667777766665554

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=93.84  E-value=4.6  Score=36.94  Aligned_cols=92  Identities=15%  Similarity=0.225  Sum_probs=68.0

Q ss_pred             hhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCc
Q 008257          329 TPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCA  408 (572)
Q Consensus       329 ~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~  408 (572)
                      +.++.+++-+++-++..   -|...+     ..+|.+...|+++ ++.||+.|...|..|...+.-  +           
T Consensus         2 ~~vR~n~i~~l~DL~~r---~~~~ve-----~~~~~l~~~L~D~-~~~VR~~al~~Ls~Li~~d~i--k-----------   59 (178)
T PF12717_consen    2 PSVRNNAIIALGDLCIR---YPNLVE-----PYLPNLYKCLRDE-DPLVRKTALLVLSHLILEDMI--K-----------   59 (178)
T ss_pred             HHHHHHHHHHHHHHHHh---CcHHHH-----hHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHcCce--e-----------
Confidence            34567788888877753   444332     3478999999999 999999999999998753210  0           


Q ss_pred             cccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhc
Q 008257          409 SIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDD  473 (572)
Q Consensus       409 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~  473 (572)
                                                     ++...+..++.+|.+++++|+..|...+..+...
T Consensus        60 -------------------------------~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   60 -------------------------------VKGQLFSRILKLLVDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             -------------------------------ehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence                                           0111336778889999999999999999999865

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=93.57  E-value=1.1  Score=51.49  Aligned_cols=301  Identities=13%  Similarity=0.114  Sum_probs=163.9

Q ss_pred             HHHHcCCcHHHHHHHcc-----CCHHHHHHHHHHHHHhcc--CcchhHHHHhhhH-HHHHHhcccCCHHHHHHHHHHHHH
Q 008257           31 QMAENGRLQPLLTQILE-----GPQETKLSLAAFLGDLAL--NSDVKVLVARTVG-SCLINIMKSGNMQAREAALKALNQ  102 (572)
Q Consensus        31 ~i~~~g~i~~Lv~~L~~-----~~~~~~~~aa~~L~~l~~--~~~~k~~i~~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~  102 (572)
                      .+.+.|++ -++.++.+     -....|++|...|..++.  +++++-.    -+ |-+|.++..+..++|..|+.+|..
T Consensus       414 ~~~~~ga~-l~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~LD----RVlPY~v~l~~Ds~a~Vra~Al~Tlt~  488 (1431)
T KOG1240|consen  414 DPKEEGAV-LFVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKLD----RVLPYFVHLLMDSEADVRATALETLTE  488 (1431)
T ss_pred             Ccccccee-eeHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHHh----hhHHHHHHHhcCchHHHHHHHHHHHHH
Confidence            45556654 33444332     245678899999999987  5555421    24 999999999999999999999988


Q ss_pred             hhcC----CCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHH
Q 008257          103 ISSC----EPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLL  178 (572)
Q Consensus       103 Ls~~----~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv  178 (572)
                      +-..    +..-..|.-.=.+|.|-.++.+.    ....++..=|..|+.||....            .+...+.-....
T Consensus       489 ~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~----~~~~vRiayAsnla~LA~tA~------------rFle~~q~~~~~  552 (1431)
T KOG1240|consen  489 LLALVRDIPPSDANIFPEYLFPHLNHLLNDS----SAQIVRIAYASNLAQLAKTAY------------RFLELTQELRQA  552 (1431)
T ss_pred             HHhhccCCCcccchhhHhhhhhhhHhhhccC----ccceehhhHHhhHHHHHHHHH------------HHHHHHHHHHhc
Confidence            8752    22223333444677777777642    125667777777887775311            011111111112


Q ss_pred             HHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHH-HHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHh
Q 008257          179 HLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATIS-LVQFVEAPQNDLRLASIELIQNLSPHMGHELADALR  257 (572)
Q Consensus       179 ~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~-Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~  257 (572)
                      .+++.++.+.          ......+ .+.. ++  ..+|.. .+.||..+++.||+.-+..|.-|+...+.+-     
T Consensus       553 g~~n~~nset----------~~~~~~~-~~~~-~L--~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~k-----  613 (1431)
T KOG1240|consen  553 GMLNDPNSET----------APEQNYN-TELQ-AL--HHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEK-----  613 (1431)
T ss_pred             ccccCccccc----------ccccccc-hHHH-HH--HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcc-----
Confidence            2222222210          0000000 0111 11  123443 3456666666777776666666663322210     


Q ss_pred             cccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHH
Q 008257          258 GAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLS  337 (572)
Q Consensus       258 ~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~  337 (572)
                      ..+-.++.|+.+|...+.  .+|.+=.-.|..++..   ....=++++.+|.|..-|.+.          .+.++..|++
T Consensus       614 sND~iLshLiTfLNDkDw--~LR~aFfdsI~gvsi~---VG~rs~seyllPLl~Q~ltD~----------EE~Viv~aL~  678 (1431)
T KOG1240|consen  614 SNDVILSHLITFLNDKDW--RLRGAFFDSIVGVSIF---VGWRSVSEYLLPLLQQGLTDG----------EEAVIVSALG  678 (1431)
T ss_pred             cccchHHHHHHHhcCccH--HHHHHHHhhccceEEE---EeeeeHHHHHHHHHHHhccCc----------chhhHHHHHH
Confidence            111357888888887753  5554333333322221   111125667788888888762          3567888999


Q ss_pred             HHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhc
Q 008257          338 VLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLES  392 (572)
Q Consensus       338 aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~  392 (572)
                      +|..+..    ..-.++..+ ..++....-+|..+ +.=+|+.++..+...+..-
T Consensus       679 ~ls~Lik----~~ll~K~~v-~~i~~~v~PlL~hP-N~WIR~~~~~iI~~~~~~l  727 (1431)
T KOG1240|consen  679 SLSILIK----LGLLRKPAV-KDILQDVLPLLCHP-NLWIRRAVLGIIAAIARQL  727 (1431)
T ss_pred             HHHHHHH----hcccchHHH-HHHHHhhhhheeCc-hHHHHHHHHHHHHHHHhhh
Confidence            8887773    222332211 11223333445577 8889988888887776543

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=93.02  E-value=16  Score=41.54  Aligned_cols=239  Identities=15%  Similarity=0.109  Sum_probs=134.5

Q ss_pred             HHHHcCCcHHHHHHHccCC-----HHHHHHHHHHHHHhccCcchhHHHHhhhH-HHHHHhcc----cCC----HHHHHHH
Q 008257           31 QMAENGRLQPLLTQILEGP-----QETKLSLAAFLGDLALNSDVKVLVARTVG-SCLINIMK----SGN----MQAREAA   96 (572)
Q Consensus        31 ~i~~~g~i~~Lv~~L~~~~-----~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~Lv~lL~----s~~----~~~~~~A   96 (572)
                      .+.+.|+++.++.++.+-.     .+.-......|..++.-..||+.+.+.|+ +.|++.|+    .+.    .+.-+.-
T Consensus       112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L  191 (802)
T PF13764_consen  112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL  191 (802)
T ss_pred             HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence            3567899999999987532     22333344555656678899999888877 88888775    333    4555666


Q ss_pred             HHHHHHhhcCCCcHHH-----HHHcCC--------hHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCC
Q 008257           97 LKALNQISSCEPSAKV-----LIHAGI--------LPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGP  163 (572)
Q Consensus        97 ~~aL~~Ls~~~~~~~~-----iv~~G~--------i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~  163 (572)
                      +.++..|.........     .....+        |..|++.+.+.. ....+.+.+..+.+|-+|+.+..         
T Consensus       192 L~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~-~r~~~~i~~~l~RiLP~Lt~G~~---------  261 (802)
T PF13764_consen  192 LEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPF-VRSNPQILQALARILPFLTYGNE---------  261 (802)
T ss_pred             HHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCcc-ccCCHHHHHHHHHHhhHHhcCCH---------
Confidence            6666666543211111     012222        666666665431 11235677788888888876432         


Q ss_pred             CccccchhhhHHHHHHHHhc----------CChhHHHHHHHHHHHccCC---CCccHHHHHHHHhcCChHHHHHHhcCCC
Q 008257          164 DNQTLVSEDIVHNLLHLISN----------TGPTIECKLLQVLVGLTSS---PTTVLSVVSAIKSSGATISLVQFVEAPQ  230 (572)
Q Consensus       164 ~~~~l~~~~~i~~Lv~lL~~----------~~~~~q~~a~~aL~~l~~~---~~~~~~~~~~i~~~g~i~~Lv~lL~~~~  230 (572)
                              ..+..|++..+.          ..++-+ ..+..++.++..   +.+...++..|.+.|.+...+..|....
T Consensus       262 --------e~m~~Lv~~F~p~l~f~~~D~~~~~~~~-~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~  332 (802)
T PF13764_consen  262 --------EKMDALVEHFKPYLDFDKFDEEHSPDEQ-FKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHF  332 (802)
T ss_pred             --------HHHHHHHHHHHHhcChhhcccccCchHH-HHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhC
Confidence                    234444444431          111111 224444444432   2233689999999999998888875433


Q ss_pred             H--------HHH--------HHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCC
Q 008257          231 N--------DLR--------LASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPE  292 (572)
Q Consensus       231 ~--------~v~--------~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~  292 (572)
                      |        +.+        ..++++|.-|+.+.. ..+..+.+  ..|+.+.++=...++ ..+-.-|-.+|-.|..
T Consensus       333 P~~~~~~s~eWk~~l~~psLp~iL~lL~GLa~gh~-~tQ~~~~~--~~l~~lH~LEqvss~-~~IGslAEnlLeal~~  406 (802)
T PF13764_consen  333 PSLKNTDSPEWKEFLSRPSLPYILRLLRGLARGHE-PTQLLIAE--QLLPLLHRLEQVSSE-EHIGSLAENLLEALAE  406 (802)
T ss_pred             cccccCCCHHHHHHhcCCcHHHHHHHHHHHHhcCH-HHHHHHHh--hHHHHHHHhhcCCCc-cchHHHHHHHHHHHhc
Confidence            2        233        356778888886632 23333333  677555555443332 2444444445544544

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=92.94  E-value=0.43  Score=38.84  Aligned_cols=69  Identities=14%  Similarity=0.194  Sum_probs=49.3

Q ss_pred             cchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHH-hcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHc
Q 008257          443 HAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLC-EAQGIKPILDVLLEKRTENLQRRAVWVVERILR  518 (572)
Q Consensus       443 g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~-~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~  518 (572)
                      -.++|++..+.+++.+|+.+|+.+|++++....   .  ..+. =..-++.|..++ ..+++.+|. +++.|-++.+
T Consensus        27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~---~--~~l~~f~~IF~~L~kl~-~D~d~~Vr~-~a~~Ld~llk   96 (97)
T PF12755_consen   27 EILPPVLKCFDDQDSRVRYYACEALYNISKVAR---G--EILPYFNEIFDALCKLS-ADPDENVRS-AAELLDRLLK   96 (97)
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH---H--HHHHHHHHHHHHHHHHH-cCCchhHHH-HHHHHHHHhc
Confidence            378999999999999999999999999986421   1  1111 123445677777 477888765 5577777653

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=92.82  E-value=0.85  Score=46.20  Aligned_cols=224  Identities=11%  Similarity=0.129  Sum_probs=142.0

Q ss_pred             HHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhcc-CcchhH-----HHHhhhH-HHHHHhccc-CCHHHHHHHHHHHHHh
Q 008257           32 MAENGRLQPLLTQILEGPQETKLSLAAFLGDLAL-NSDVKV-----LVARTVG-SCLINIMKS-GNMQAREAALKALNQI  103 (572)
Q Consensus        32 i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~-~~~~k~-----~i~~~g~-~~Lv~lL~s-~~~~~~~~A~~aL~~L  103 (572)
                      +...+.+..|+..|..-+-+.|...+....++.. ..+.+.     .+. ... ..|.-+++. ++++.--.+-..|+..
T Consensus        72 i~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~-~~~peil~~L~~gy~~~dial~~g~mlRec  150 (335)
T PF08569_consen   72 IYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLE-RHRPEILDILLRGYENPDIALNCGDMLREC  150 (335)
T ss_dssp             HHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHH-T--THHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHH-hCCHHHHHHHHHHhcCccccchHHHHHHHH
Confidence            4455778888888888888888888777777654 222222     122 222 233333332 4667778888899998


Q ss_pred             hcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccc--hhhhHHHHHHHH
Q 008257          104 SSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLV--SEDIVHNLLHLI  181 (572)
Q Consensus       104 s~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~--~~~~i~~Lv~lL  181 (572)
                      ..++.-.+.+.....+-.+.+....++     -++-..|..++..+-.....    .+.   ..+.  -..++...-.||
T Consensus       151 ~k~e~l~~~iL~~~~f~~ff~~~~~~~-----Fdiasdaf~t~~~llt~hk~----~~a---~fl~~n~d~ff~~~~~Ll  218 (335)
T PF08569_consen  151 IKHESLAKIILYSECFWKFFKYVQLPN-----FDIASDAFSTFKELLTRHKK----LVA---EFLSNNYDRFFQKYNKLL  218 (335)
T ss_dssp             TTSHHHHHHHHTSGGGGGHHHHTTSSS-----HHHHHHHHHHHHHHHHSSHH----HHH---HHHHHTHHHHHHHHHHHC
T ss_pred             HhhHHHHHHHhCcHHHHHHHHHhcCCc-----cHhHHHHHHHHHHHHhccHH----HHH---HHHHHHHHHHHHHHHHHc
Confidence            888777788888888888888876542     67777788887776432210    000   0111  123566778888


Q ss_pred             hcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCC--CCChhHHHHHhcc
Q 008257          182 SNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSP--HMGHELADALRGA  259 (572)
Q Consensus       182 ~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~--~~~~~~~~~i~~~  259 (572)
                      .+++.-.+.++++.|..+-.++.+.....+-+.+..-+..+..+|+++...+|-.|.-++.-...  +.+.++.+.+..+
T Consensus       219 ~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~N  298 (335)
T PF08569_consen  219 ESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKN  298 (335)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHT
T ss_pred             cCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHH
Confidence            89999999999999999988876532223334455567888899999999999999988877653  3355565555443


Q ss_pred             cCChhhHHhhhc
Q 008257          260 VGQLGSLIRVIS  271 (572)
Q Consensus       260 ~g~l~~Lv~lL~  271 (572)
                         =..|+++|.
T Consensus       299 ---r~kLl~fl~  307 (335)
T PF08569_consen  299 ---REKLLRFLK  307 (335)
T ss_dssp             ---HHHHHHHHH
T ss_pred             ---HHHHHHHHH
Confidence               134555553

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.49  E-value=29  Score=41.50  Aligned_cols=315  Identities=12%  Similarity=0.115  Sum_probs=149.6

Q ss_pred             HHHHHccCCHHHHHHH-HHHHHHhccCcchhHHH-HhhhH-HHHHHhcccCCHHHHHHHHHHHHHhhc--CCCcHHHHHH
Q 008257           41 LLTQILEGPQETKLSL-AAFLGDLALNSDVKVLV-ARTVG-SCLINIMKSGNMQAREAALKALNQISS--CEPSAKVLIH  115 (572)
Q Consensus        41 Lv~~L~~~~~~~~~~a-a~~L~~l~~~~~~k~~i-~~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~--~~~~~~~iv~  115 (572)
                      |.+.+.++++..|... .|.|.-.-.-...+... ....+ ..+..+|...++-.|.-|.+=|.-.=.  +.+.++.+  
T Consensus       823 l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k~~L--  900 (1702)
T KOG0915|consen  823 LDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLKKSL--  900 (1702)
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhHHHH--
Confidence            3445556666665443 34443221111122222 12245 778888888887778777664433221  23334443  


Q ss_pred             cCChHHHHHHHhccCC-----------------CCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHH
Q 008257          116 AGILPPLVKDLFTVGS-----------------NHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLL  178 (572)
Q Consensus       116 ~G~i~~Lv~lL~s~~~-----------------~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv  178 (572)
                         +..|++-|..+..                 ...+..-+...=.=|.|||+               -+-.++.|..++
T Consensus       901 ---V~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LAS---------------dl~qPdLVYKFM  962 (1702)
T KOG0915|consen  901 ---VDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLAS---------------DLGQPDLVYKFM  962 (1702)
T ss_pred             ---HHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHh---------------hcCChHHHHHHH
Confidence               4445555532210                 00000001111111333333               123455677777


Q ss_pred             HHHhc-CChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHh
Q 008257          179 HLISN-TGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALR  257 (572)
Q Consensus       179 ~lL~~-~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~  257 (572)
                      +|-++ ....-+.-|+.-+..++....  +..+..+  ..-||.|.+.=.+++..+|..=..+...|..+ ...+.+.-.
T Consensus       963 ~LAnh~A~wnSk~GaAfGf~~i~~~a~--~kl~p~l--~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D-~k~~vd~y~ 1037 (1702)
T KOG0915|consen  963 QLANHNATWNSKKGAAFGFGAIAKQAG--EKLEPYL--KKLIPRLYRYQYDPDKKVQDAMTSIWNALITD-SKKVVDEYL 1037 (1702)
T ss_pred             HHhhhhchhhcccchhhchHHHHHHHH--HhhhhHH--HHhhHHHhhhccCCcHHHHHHHHHHHHHhccC-hHHHHHHHH
Confidence            77663 233444445444444443321  1122111  23577777776677888776544444445544 233333322


Q ss_pred             cccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHH-HHhhhccCCCCCCcchhhHHHHHH
Q 008257          258 GAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFS-RVKSIQLGETRGSRFVTPFLEGLL  336 (572)
Q Consensus       258 ~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~-lL~~~~~~~~~~~~~~~~~~e~a~  336 (572)
                      .  -++.-|+.=|.+.. + .+|+++.-+|..|-.+.+ . ..+.+  -+|.+.. +++-.. + ++  ......-+.++
T Consensus      1038 n--eIl~eLL~~lt~ke-w-RVReasclAL~dLl~g~~-~-~~~~e--~lpelw~~~fRvmD-D-IK--EsVR~aa~~~~ 1105 (1702)
T KOG0915|consen 1038 N--EILDELLVNLTSKE-W-RVREASCLALADLLQGRP-F-DQVKE--KLPELWEAAFRVMD-D-IK--ESVREAADKAA 1105 (1702)
T ss_pred             H--HHHHHHHHhccchh-H-HHHHHHHHHHHHHHcCCC-h-HHHHH--HHHHHHHHHHHHHH-H-HH--HHHHHHHHHHH
Confidence            2  25566666666655 4 788888888888766422 2 12221  2333332 222110 0 00  01222233455


Q ss_pred             HHHHHHhccCC--CChHHHHHHHHcCchHHHHH--HhccCCcHHHHHHHHHHHHHhhhhcccc
Q 008257          337 SVLARVTFVLS--DEPDAIALCCEHNLAALFIE--LLQSNGLDKVQMVSATALENLSLESKNL  395 (572)
Q Consensus       337 ~aL~~l~~~~~--~~~~~~~~i~~~g~i~~Lv~--lL~~~~~~~vk~~Aa~aL~~ls~~~~~~  395 (572)
                      .+|.+++-...  .++.--+.+. ..++|.|++  .+ +. ..++++.+...+..|+.+.+..
T Consensus      1106 ~~lsKl~vr~~d~~~~~~~~~~l-~~iLPfLl~~gim-s~-v~evr~~si~tl~dl~Kssg~~ 1165 (1702)
T KOG0915|consen 1106 RALSKLCVRICDVTNGAKGKEAL-DIILPFLLDEGIM-SK-VNEVRRFSIGTLMDLAKSSGKE 1165 (1702)
T ss_pred             HHHHHHHhhhcccCCcccHHHHH-HHHHHHHhccCcc-cc-hHHHHHHHHHHHHHHHHhchhh
Confidence            56655542211  2232222322 245677662  22 33 7889999999999998877654

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=92.45  E-value=1.5  Score=40.64  Aligned_cols=120  Identities=18%  Similarity=0.169  Sum_probs=87.0

Q ss_pred             CHHHHHHHHHHHHhhccCcchHHHHHHc----------------CCcHHHHHHHccC-----C-HHHHHHHHHHHHHhcc
Q 008257            8 NLLTVEKAEKTLANLEKCENNVRQMAEN----------------GRLQPLLTQILEG-----P-QETKLSLAAFLGDLAL   65 (572)
Q Consensus         8 ~~~~~~~A~~~L~~L~~~~~n~~~i~~~----------------g~i~~Lv~~L~~~-----~-~~~~~~aa~~L~~l~~   65 (572)
                      +......++.+|+||+..++....+...                .++..|+..+..|     + .+.-...|..+.|++.
T Consensus         8 ~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~   87 (192)
T PF04063_consen    8 KSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ   87 (192)
T ss_pred             CcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC
Confidence            3346778899999999988887755533                2467777777662     2 2233567888999999


Q ss_pred             CcchhHHHHhh---h--HHHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHH---cCChHHHHHHHh
Q 008257           66 NSDVKVLVART---V--GSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIH---AGILPPLVKDLF  127 (572)
Q Consensus        66 ~~~~k~~i~~~---g--~~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~---~G~i~~Lv~lL~  127 (572)
                      ..+.|+.+...   .  +..|+.++.+.+..-|..++.+++|++-+.+....+..   .+.+|.|+--|.
T Consensus        88 ~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa  157 (192)
T PF04063_consen   88 LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA  157 (192)
T ss_pred             CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence            98888887643   2  35677777778878889999999999988888777774   456666655553

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=92.41  E-value=1.1  Score=40.15  Aligned_cols=148  Identities=11%  Similarity=0.136  Sum_probs=88.5

Q ss_pred             hHHHHHHhcC--CCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHH
Q 008257          219 TISLVQFVEA--PQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLG  296 (572)
Q Consensus       219 i~~Lv~lL~~--~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~  296 (572)
                      +..++..|..  ..+++|..+.-++..+-+...    +...+.  .-..+-.++..++.  +....+..++..|--..++
T Consensus         5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l~~~~----~~~~~~--~~~~i~~~~~~~~~--d~~i~~~~~l~~lfp~~~d   76 (157)
T PF11701_consen    5 LDTLLTSLDMLRQPEEVRSHALVILSKLLDAAR----EEFKEK--ISDFIESLLDEGEM--DSLIIAFSALTALFPGPPD   76 (157)
T ss_dssp             CCHHHHHHHCTTTSCCHHHHHHHHHHHHHHHHH----HHHHHH--HHHHHHHHHCCHHC--CHHHHHHHHHHHHCTTTHH
T ss_pred             HHHHHHHhcccCCCHhHHHHHHHHHHHHHHHhH----HHHHHH--HHHHHHHHHccccc--hhHHHHHHHHHHHhCCCHH
Confidence            4445555543  456788888887776631111    112211  11223333444443  4555666666665444666


Q ss_pred             HHH-HHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcH
Q 008257          297 LTR-QMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLD  375 (572)
Q Consensus       297 ~~~-~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~  375 (572)
                      ... .+..+|.++.++.+.....        .+..++..++.+|..-+    .|...|..+.+.| ++.|-++++.+.++
T Consensus        77 v~~~l~~~eg~~~~l~~~~~~~~--------~~~~~~~~~lell~aAc----~d~~~r~~I~~~~-~~~L~~~~~~~~~~  143 (157)
T PF11701_consen   77 VGSELFLSEGFLESLLPLASRKS--------KDRKVQKAALELLSAAC----IDKSCRTFISKNY-VSWLKELYKNSKDD  143 (157)
T ss_dssp             HHHHHCCTTTHHHHHHHHHH-CT--------S-HHHHHHHHHHHHHHT----TSHHHHHCCHHHC-HHHHHHHTTTCC-H
T ss_pred             HHHHHHhhhhHHHHHHHHHhccc--------CCHHHHHHHHHHHHHHH----ccHHHHHHHHHHH-HHHHHHHHccccch
Confidence            554 4458888998888887211        23455666777666555    4888888888876 59999999655366


Q ss_pred             H-HHHHHHHHHHH
Q 008257          376 K-VQMVSATALEN  387 (572)
Q Consensus       376 ~-vk~~Aa~aL~~  387 (572)
                      . +|..|+.+|.-
T Consensus       144 ~~ir~~A~v~L~K  156 (157)
T PF11701_consen  144 SEIRVLAAVGLCK  156 (157)
T ss_dssp             H-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc
Confidence            6 89999988863

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=92.26  E-value=1.2  Score=42.78  Aligned_cols=101  Identities=21%  Similarity=0.276  Sum_probs=76.5

Q ss_pred             HHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCC-----HHHHHHHHHHHHHcCCCCChhHHHHHhcccCChh
Q 008257          190 CKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQ-----NDLRLASIELIQNLSPHMGHELADALRGAVGQLG  264 (572)
Q Consensus       190 ~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-----~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~  264 (572)
                      .+|+..|..++++++    .|..+.++...-.|.++|+..+     +.+|-.++..++.|.+.++.++...+..+ ..+|
T Consensus        68 cnaLaLlQ~vAshpe----tr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~t-Eiip  142 (262)
T PF04078_consen   68 CNALALLQCVASHPE----TRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQT-EIIP  142 (262)
T ss_dssp             HHHHHHHHHHHH-TT----THHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCT-THHH
T ss_pred             HHHHHHHHHHHcChH----HHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhh-chHH
Confidence            467777788888875    4888899999889999997543     36788999999999987777887788877 8999


Q ss_pred             hHHhhhccCCCChHHHHHHHHHHhcCCCCcHHH
Q 008257          265 SLIRVISENVGISKEQAAAVGLLAELPERDLGL  297 (572)
Q Consensus       265 ~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~  297 (572)
                      .-++.++.+++  --+..|..++..+-.++...
T Consensus       143 lcLr~me~Gse--lSKtvAtfIlqKIL~dd~GL  173 (262)
T PF04078_consen  143 LCLRIMEFGSE--LSKTVATFILQKILLDDVGL  173 (262)
T ss_dssp             HHHHHHHHS-H--HHHHHHHHHHHHHHHSHHHH
T ss_pred             HHHHHHHhccH--HHHHHHHHHHHHHHcchhHH
Confidence            99999999885  67788888888876644444

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG1788 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.21  E-value=23  Score=40.61  Aligned_cols=469  Identities=17%  Similarity=0.155  Sum_probs=223.3

Q ss_pred             CCCCHHHHHHHHHHHHhhcc-CcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhcc---Cc-chhHHHHhhhHH
Q 008257            5 KSENLLTVEKAEKTLANLEK-CENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLAL---NS-DVKVLVARTVGS   79 (572)
Q Consensus         5 ~s~~~~~~~~A~~~L~~L~~-~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~---~~-~~k~~i~~~g~~   79 (572)
                      ++++...+......+...-. .++|-...-+.--++-|+--+..-+..+|..-...|- .+.   +. ..+..+      
T Consensus       477 kaenkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnmegfPsslqvkiLkilE-yAVtvvncvPeqELl------  549 (2799)
T KOG1788|consen  477 KAENKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNMEGFPSSLQVKILKILE-YAVTVVNCVPEQELL------  549 (2799)
T ss_pred             HhcCcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhhcCCChHHHHHHHHHHH-HHHhhhccCcHHHHH------
Confidence            45555555555555555543 5677666666667777777666666666655544442 111   10 111111      


Q ss_pred             HHHHhcccCC-HHHHHHHHHHHHHhhc-CCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHH--HHHHhcCCC
Q 008257           80 CLINIMKSGN-MQAREAALKALNQISS-CEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATIL--ANVVNSGHD  155 (572)
Q Consensus        80 ~Lv~lL~s~~-~~~~~~A~~aL~~Ls~-~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L--~nla~~~~~  155 (572)
                      .|--+|+.+- ...+.--+....+|-+ +..+++.+.|-|.+..|-..|+.+.---. ++ |.....--  .|..  +++
T Consensus       550 SLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~g-pd-qysgvsehydrnps--s~s  625 (2799)
T KOG1788|consen  550 SLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRG-PD-QYSGVSEHYDRNPS--SPS  625 (2799)
T ss_pred             HHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccC-cc-hhhhHHHHhhcCCC--Cch
Confidence            2223343321 2333334444445555 44567778899999999888865310000 00 00000000  0000  000


Q ss_pred             CCccccCCCccccchhhhHHHHHHHHhcCCh--hHHHHH------HHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhc
Q 008257          156 FDSITVGPDNQTLVSEDIVHNLLHLISNTGP--TIECKL------LQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVE  227 (572)
Q Consensus       156 ~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~--~~q~~a------~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~  227 (572)
                      +++        .+.....+-.--.+..+++.  .+.+..      -.+|..+-+++   .++.+.++++.|+..+++++ 
T Consensus       626 f~~--------~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnn---teNqklFreanGvklilpfl-  693 (2799)
T KOG1788|consen  626 FKQ--------HLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNN---TENQKLFREANGVKLILPFL-  693 (2799)
T ss_pred             hhh--------ccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhcc---chhhHHHHhhcCceEEEEee-
Confidence            000        00000001000111122111  111111      11233333433   35678899999999998888 


Q ss_pred             CCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCC--C--------hHHHHHHHHHHhcCCCCcHHH
Q 008257          228 APQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVG--I--------SKEQAAAVGLLAELPERDLGL  297 (572)
Q Consensus       228 ~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~--~--------~~~~~~A~~~L~~L~~~~~~~  297 (572)
                       -+++-|..-++++.+|-..++..+    ..  .-+..||..|.++-.  +        -......+++++.+...+...
T Consensus       694 -indehRSslLrivscLitvdpkqv----hh--qelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsa  766 (2799)
T KOG1788|consen  694 -INDEHRSSLLRIVSCLITVDPKQV----HH--QELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSA  766 (2799)
T ss_pred             -echHHHHHHHHHHHHHhccCcccc----cH--HHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchh
Confidence             345567777888888875443322    10  124566777766321  0        134566677888876556666


Q ss_pred             HHHHHhCCChHHHHHHHhhhccC-CCCCCcchhhHHHHHHHHHHHH-hccCCCChHHHHHHHHcCchHHHHHHhccCC--
Q 008257          298 TRQMLDEGAFGLIFSRVKSIQLG-ETRGSRFVTPFLEGLLSVLARV-TFVLSDEPDAIALCCEHNLAALFIELLQSNG--  373 (572)
Q Consensus       298 ~~~l~~~g~l~~Lv~lL~~~~~~-~~~~~~~~~~~~e~a~~aL~~l-~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~--  373 (572)
                      ++.+.++|++..|...|..-+.- +.......+..+ .....|+++ +.....++.+++.+.-.=.-..+.+||+-.+  
T Consensus       767 qrvFgeatGFslLlttLhtfqgftelhdesDlcvyi-klfkilFrlfTlavcenasNrmklhtvITsqtftsLLresgll  845 (2799)
T KOG1788|consen  767 QRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYI-KLFKILFRLFTLAVCENASNRMKLHTVITSQTFTSLLRESGLL  845 (2799)
T ss_pred             eeehhccccHHHHHHHHHHhccchhcCCchhhhhHH-HHHHHHHHHHHHHHhhcchhhhheeeeeeHHHHHHHHHHhccc
Confidence            67899999999999988753310 000111122222 233444432 1000135555544332222233444444331  


Q ss_pred             cHHHHHHHHHHHHHhhhhc---cccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHH
Q 008257          374 LDKVQMVSATALENLSLES---KNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIA  450 (572)
Q Consensus       374 ~~~vk~~Aa~aL~~ls~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~  450 (572)
                      ..+..++....|..++...   +.++.. ..    .|..++..-   ... -......|--. ...-.+..+|++..|++
T Consensus       846 cvnler~viqlllElalevlvppfLtSE-sa----AcaeVfele---dni-favntPsGqfn-pdk~~iynagavRvlir  915 (2799)
T KOG1788|consen  846 CVNLERHVIQLLLELALEVLVPPFLTSE-SA----ACAEVFELE---DNI-FAVNTPSGQFN-PDKQKIYNAGAVRVLIR  915 (2799)
T ss_pred             eecchHHHHHHHHHHHHHhhCCchhhhh-HH----HHHHHhhcc---cce-eeeccCCCCcC-chHhhhcccchhHHHHH
Confidence            1111222222222222111   000000 00    000000000   000 00000000000 01112458999999999


Q ss_pred             hhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhh--cCCHHHHHHHHHHHHHHH
Q 008257          451 LLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLE--KRTENLQRRAVWVVERIL  517 (572)
Q Consensus       451 lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~~~~~~a~~~l~~l~  517 (572)
                      .+-...++.+..-++.+..++.-.+   .+++.....|.+..|++++..  +++...-..+..+++-++
T Consensus       916 slLlnypK~qlefl~lleSlaRasp---fnaelltS~gcvellleIiypflsgsspfLshalkIvemLg  981 (2799)
T KOG1788|consen  916 SLLLNYPKLQLEFLNLLESLARASP---FNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKIVEMLG  981 (2799)
T ss_pred             HHHhhChHHHHHHHHHHHHHhhcCC---CchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHHHHHHh
Confidence            9988889999999998888886544   346677788999888887732  444555566666665444

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=91.68  E-value=0.62  Score=37.93  Aligned_cols=66  Identities=18%  Similarity=0.220  Sum_probs=49.8

Q ss_pred             hHHHHHHHhhcCCHHHHHHHHHHHHHHHcc--hhhhhhhcCCCCchHHHHHHhhcCCchhHHHHHHHHHhhcc
Q 008257          490 IKPILDVLLEKRTENLQRRAVWVVERILRT--DDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHIDK  560 (572)
Q Consensus       490 i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~--~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~~  560 (572)
                      +++++..+ ++++..+|..|..+|.++++.  ++.-..|..  -+ ..|.++..+.+++||. ++..|-+|-+
T Consensus        29 l~pVL~~~-~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~--IF-~~L~kl~~D~d~~Vr~-~a~~Ld~llk   96 (97)
T PF12755_consen   29 LPPVLKCF-DDQDSRVRYYACEALYNISKVARGEILPYFNE--IF-DALCKLSADPDENVRS-AAELLDRLLK   96 (97)
T ss_pred             HHHHHHHc-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH-HHHHHHHcCCchhHHH-HHHHHHHHhc
Confidence            58888999 699999999999999999976  333333433  23 4889999999999885 4566666543

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=91.17  E-value=6.1  Score=39.54  Aligned_cols=163  Identities=18%  Similarity=0.169  Sum_probs=103.4

Q ss_pred             CCCCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccCcc--hhHH-------HH
Q 008257            4 SKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSD--VKVL-------VA   74 (572)
Q Consensus         4 ~~s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~--~k~~-------i~   74 (572)
                      .+|+|+.+++.|.+.|.-.+--+.   .+++. .++.+...++.++.++|..|..++.++....+  .-..       ..
T Consensus        36 v~~~~~~vR~~al~cLGl~~Lld~---~~a~~-~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~  111 (298)
T PF12719_consen   36 VQSSDPAVRELALKCLGLCCLLDK---ELAKE-HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVD  111 (298)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHhCh---HHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccch
Confidence            478899999999999999987554   33333 35677777788899999999999999765222  1111       12


Q ss_pred             hhhH-HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcC
Q 008257           75 RTVG-SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSG  153 (572)
Q Consensus        75 ~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~  153 (572)
                      ...+ ..+.+.|.++++++|..|+..+.+|-.......   ....+..|+-+..++.. .....+|+.-...+-..+.++
T Consensus       112 ~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t-~~~~~LrQ~L~~Ffp~y~~s~  187 (298)
T PF12719_consen  112 SKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPST-EDNQRLRQCLSVFFPVYASSS  187 (298)
T ss_pred             HhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCccc-CCcHHHHHHHHHHHHHHHcCC
Confidence            2355 788899999999999999999999887654332   13344555554444321 122455554444444445433


Q ss_pred             CCCCccccCCCccccchhhhHHHHHHHHhc
Q 008257          154 HDFDSITVGPDNQTLVSEDIVHNLLHLISN  183 (572)
Q Consensus       154 ~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~  183 (572)
                      ...         +....+.++|.+-.+.+.
T Consensus       188 ~~~---------Q~~l~~~f~~~l~~~~~~  208 (298)
T PF12719_consen  188 PEN---------QERLAEAFLPTLRTLSNA  208 (298)
T ss_pred             HHH---------HHHHHHHHHHHHHHHHhC
Confidence            211         233445566666665553

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=91.03  E-value=0.14  Score=52.52  Aligned_cols=189  Identities=14%  Similarity=0.067  Sum_probs=105.3

Q ss_pred             HHHHHHHHHHHHHhhcCCCcHHHH-HHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCc-cc
Q 008257           90 MQAREAALKALNQISSCEPSAKVL-IHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDN-QT  167 (572)
Q Consensus        90 ~~~~~~A~~aL~~Ls~~~~~~~~i-v~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~-~~  167 (572)
                      .-++..|.+++..+..++..+... .-..+-......|.+.     ....|++++|+++||...=       ++..- ..
T Consensus       405 ~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~-----~ln~r~KaawtlgnITdAL-------~~~~Ps~~  472 (728)
T KOG4535|consen  405 RLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDK-----SLNVRAKAAWSLGNITDAL-------IVNMPTPD  472 (728)
T ss_pred             HHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhH-----hHhHHHHHHHHhhhhHHHH-------HcCCCCch
Confidence            345667777777777777665433 2344444445555442     2678999999999996421       00000 00


Q ss_pred             cchhhhHHHH-HHHHh------cCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCC-CHHHHHHHHH
Q 008257          168 LVSEDIVHNL-LHLIS------NTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAP-QNDLRLASIE  239 (572)
Q Consensus       168 l~~~~~i~~L-v~lL~------~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~a~~  239 (572)
                      -..+.++..+ .+++.      .....++.++.++|.++.+.-...++.--...+.|.+..++.-.-.+ .-.||=+++-
T Consensus       473 s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCy  552 (728)
T KOG4535|consen  473 SFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACY  552 (728)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHH
Confidence            0122233332 33443      24567888999999888764211001111112334444444333222 3578999999


Q ss_pred             HHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCC
Q 008257          240 LIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPE  292 (572)
Q Consensus       240 ~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~  292 (572)
                      ++.||-++..-..+.. .-..-..+.|..++.+-.+ -+++..|+++|..-..
T Consensus       553 a~gNLfkn~a~~lq~~-~wA~~~F~~L~~Lv~~~~N-FKVRi~AA~aL~vp~~  603 (728)
T KOG4535|consen  553 AMGNLFKNPALPLQTA-PWASQAFNALTSLVTSCKN-FKVRIRAAAALSVPGK  603 (728)
T ss_pred             HHHHhhcCccccccCC-CchHHHHHHHHHHHHHhcc-ceEeehhhhhhcCCCC
Confidence            9999987732211111 1111356788888877765 3788888888876544

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=90.81  E-value=3.9  Score=43.13  Aligned_cols=125  Identities=16%  Similarity=0.197  Sum_probs=84.4

Q ss_pred             ChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccch----hhhHHHHHHHHhcCChhHHHHHH
Q 008257          118 ILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVS----EDIVHNLLHLISNTGPTIECKLL  193 (572)
Q Consensus       118 ~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~----~~~i~~Lv~lL~~~~~~~q~~a~  193 (572)
                      .+..|+++|++       +.+...+|..+.-+....++.....-+.+.+.+..    ..++|.|++-.+..+.+.+.+.+
T Consensus       272 ~~~~L~~lL~~-------~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL  344 (415)
T PF12460_consen  272 LLDKLLELLSS-------PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYL  344 (415)
T ss_pred             HHHHHHHHhCC-------hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHH
Confidence            35667888864       56788999999999876333221111111122222    34788888888888888899999


Q ss_pred             HHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhH
Q 008257          194 QVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHEL  252 (572)
Q Consensus       194 ~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~  252 (572)
                      .+|..+-.+-.. .-+...+  ...+|.|++-|..++.+++..++.+|..+..+.++-+
T Consensus       345 ~ALs~ll~~vP~-~vl~~~l--~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i  400 (415)
T PF12460_consen  345 TALSHLLKNVPK-SVLLPEL--PTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELI  400 (415)
T ss_pred             HHHHHHHhhCCH-HHHHHHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHH
Confidence            999988875332 1222221  3478889999999999999999999999887754333

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=90.77  E-value=2.3  Score=48.86  Aligned_cols=158  Identities=16%  Similarity=0.189  Sum_probs=117.8

Q ss_pred             HHHHHhcc----cCCHHHHHHHHHHHHHhhcCC-CcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcC
Q 008257           79 SCLINIMK----SGNMQAREAALKALNQISSCE-PSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSG  153 (572)
Q Consensus        79 ~~Lv~lL~----s~~~~~~~~A~~aL~~Ls~~~-~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~  153 (572)
                      |.+++.++    .++|+.|.+|.-||..+..-. +.+     .--+|.|+..+...    +++.+|.+++-.++-++-.-
T Consensus       922 piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fc-----es~l~llftimeks----p~p~IRsN~VvalgDlav~f  992 (1251)
T KOG0414|consen  922 PIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFC-----ESHLPLLFTIMEKS----PSPRIRSNLVVALGDLAVRF  992 (1251)
T ss_pred             HHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhcC----CCceeeecchheccchhhhc
Confidence            77888884    467999999999999998633 223     23679999999732    34899999999999987643


Q ss_pred             CCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHH
Q 008257          154 HDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDL  233 (572)
Q Consensus       154 ~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v  233 (572)
                      ++.             -+..-+.|.+.|..+++.++..|+.+|..|-.+.        .|.-.|-++-+...+.++++++
T Consensus       993 pnl-------------ie~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd--------miKVKGql~eMA~cl~D~~~~I 1051 (1251)
T KOG0414|consen  993 PNL-------------IEPWTEHLYRRLRDESPSVRKTALLVLSHLILND--------MIKVKGQLSEMALCLEDPNAEI 1051 (1251)
T ss_pred             ccc-------------cchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh--------hhHhcccHHHHHHHhcCCcHHH
Confidence            221             1345677888888999999999999999986553        3344789999999999999999


Q ss_pred             HHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCC
Q 008257          234 RLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENV  274 (572)
Q Consensus       234 ~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~  274 (572)
                      +..|-..+..|+... +.+    .   ..+|-++.-|++++
T Consensus      1052 sdlAk~FF~Els~k~-n~i----y---nlLPdil~~Ls~~~ 1084 (1251)
T KOG0414|consen 1052 SDLAKSFFKELSSKG-NTI----Y---NLLPDILSRLSNGN 1084 (1251)
T ss_pred             HHHHHHHHHHhhhcc-cch----h---hhchHHHHhhccCc
Confidence            999988888888653 222    2   35566666666654

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=90.71  E-value=1.7  Score=39.84  Aligned_cols=93  Identities=17%  Similarity=0.115  Sum_probs=73.7

Q ss_pred             CHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhHHHHHHhccc
Q 008257            8 NLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMKS   87 (572)
Q Consensus         8 ~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~~~Lv~lL~s   87 (572)
                      ||.++..+..++..|+..-.+..   + .+++.+...|+++++.+|..|...|.+|...+-.|..  ......++.+|..
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~v---e-~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k--~~l~~~~l~~l~D   74 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLV---E-PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK--GQLFSRILKLLVD   74 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHH---H-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh--hhhhHHHHHHHcC
Confidence            67888999999999998654433   2 3678899999999999999999999999876543332  1122667778888


Q ss_pred             CCHHHHHHHHHHHHHhhcC
Q 008257           88 GNMQAREAALKALNQISSC  106 (572)
Q Consensus        88 ~~~~~~~~A~~aL~~Ls~~  106 (572)
                      ++++++..|..++..+...
T Consensus        75 ~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   75 ENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             CCHHHHHHHHHHHHHHHHh
Confidence            9999999999999999975

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.63  E-value=2.7  Score=45.99  Aligned_cols=156  Identities=14%  Similarity=0.245  Sum_probs=90.7

Q ss_pred             CChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHh-----c------CC
Q 008257          117 GILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLIS-----N------TG  185 (572)
Q Consensus       117 G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~-----~------~~  185 (572)
                      |.+--.+++|++++     .+++..+..+...|+.+.                   .+..++.+|+     .      ..
T Consensus       317 ~l~mDvLrvLss~d-----ldvr~Ktldi~ldLvssr-------------------Nvediv~~Lkke~~kT~~~e~d~~  372 (948)
T KOG1058|consen  317 GLIMDVLRVLSSPD-----LDVRSKTLDIALDLVSSR-------------------NVEDIVQFLKKEVMKTHNEESDDN  372 (948)
T ss_pred             HHHHHHHHHcCccc-----ccHHHHHHHHHHhhhhhc-------------------cHHHHHHHHHHHHHhccccccccc
Confidence            44455566776653     788888888888887643                   2555555554     1      12


Q ss_pred             hhHHHHHHHHHHHccCC-CCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChh
Q 008257          186 PTIECKLLQVLVGLTSS-PTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLG  264 (572)
Q Consensus       186 ~~~q~~a~~aL~~l~~~-~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~  264 (572)
                      ...++-.++++...+.. ++    .     .+..|+.|++++.+.++..-...+..++..-...+ .    ++.  ..+.
T Consensus       373 ~~yRqlLiktih~cav~Fp~----~-----aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p-~----Lr~--~ii~  436 (948)
T KOG1058|consen  373 GKYRQLLIKTIHACAVKFPE----V-----AATVVSLLLDFISDSNEAAASDVLMFVREAIEKFP-N----LRA--SIIE  436 (948)
T ss_pred             hHHHHHHHHHHHHHhhcChH----H-----HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCc-h----HHH--HHHH
Confidence            34567788899888764 42    2     14478999999988887654444444443322211 1    222  2344


Q ss_pred             hHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHH--HHH--hCCChHHHHHH
Q 008257          265 SLIRVISENVGISKEQAAAVGLLAELPERDLGLTR--QML--DEGAFGLIFSR  313 (572)
Q Consensus       265 ~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~--~l~--~~g~l~~Lv~l  313 (572)
                      .|++-+..-.+ .+....|+|+++.-+....+++.  ..+  ..|-+|.+-.=
T Consensus       437 ~l~~~~~~irS-~ki~rgalwi~GeYce~~~~i~~~~k~i~~slGEvp~~~se  488 (948)
T KOG1058|consen  437 KLLETFPQIRS-SKICRGALWILGEYCEGLSEIQSVIKIIRQSLGEVPIVCSE  488 (948)
T ss_pred             HHHHhhhhhcc-cccchhHHHHHHHHHhhhHHHHHHHHHHHHhccccceehHH
Confidence            44444432221 25667788999887776654443  222  34777766544

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=90.27  E-value=9.6  Score=36.71  Aligned_cols=88  Identities=14%  Similarity=0.175  Sum_probs=58.4

Q ss_pred             hhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCC--CHHHHHHHHHHHHHcCCCC
Q 008257          171 EDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAP--QNDLRLASIELIQNLSPHM  248 (572)
Q Consensus       171 ~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~a~~~L~~Ls~~~  248 (572)
                      +..|..|++-+..++.-+|..++.+|..|-+              .-+||.|.+-|...  ++-||..|+.+|..+++. 
T Consensus       186 EeaI~al~~~l~~~SalfrhEvAfVfGQl~s--------------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e-  250 (289)
T KOG0567|consen  186 EEAINALIDGLADDSALFRHEVAFVFGQLQS--------------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIADE-  250 (289)
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHHHhhccc--------------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH-
Confidence            4467777777776777777777776655532              33688888888654  467999999999887644 


Q ss_pred             ChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHH
Q 008257          249 GHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLL  287 (572)
Q Consensus       249 ~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L  287 (572)
                        +          +++.|.+++..+.+  -++..+..+|
T Consensus       251 --~----------~~~vL~e~~~D~~~--vv~esc~val  275 (289)
T KOG0567|consen  251 --D----------CVEVLKEYLGDEER--VVRESCEVAL  275 (289)
T ss_pred             --H----------HHHHHHHHcCCcHH--HHHHHHHHHH
Confidence              2          45666666666664  4554444444

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=89.91  E-value=8.6  Score=40.75  Aligned_cols=155  Identities=18%  Similarity=0.244  Sum_probs=111.1

Q ss_pred             HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcC-CCCC
Q 008257           79 SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSG-HDFD  157 (572)
Q Consensus        79 ~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~-~~~~  157 (572)
                      ..+.+.+.+++...|..|.+-|..++.+.......+...++..|.++..+++. -...++...+..++..+-.++ .+|+
T Consensus        86 ~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~-~~~~~~L~~~L~af~elmehgvvsW~  164 (713)
T KOG2999|consen   86 KRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRV-CMSSELLSTSLRAFSELMEHGVVSWE  164 (713)
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCcc-chHHHHHHHHHHHHHHHHhhceeeee
Confidence            57889999999999988999999999999999999999999999999987530 012344455555555554432 2233


Q ss_pred             ccccCCCccccchhhhHHHHHHHHhc--CChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHH
Q 008257          158 SITVGPDNQTLVSEDIVHNLLHLISN--TGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRL  235 (572)
Q Consensus       158 ~~~~~~~~~~l~~~~~i~~Lv~lL~~--~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~  235 (572)
                      .          ....+|.....+.+.  .+..+-..|+..|-++...+.   ..+..+.+.--+..|+..++..+..++.
T Consensus       165 ~----------~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~---~~~~~v~eev~i~~li~hlq~~n~~i~~  231 (713)
T KOG2999|consen  165 S----------VSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSD---TLRQLVAEEVPIETLIRHLQVSNQRIQT  231 (713)
T ss_pred             e----------cccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCCh---HHHHHHHhcCcHHHHHHHHHhcchHHHH
Confidence            2          233455555555432  234456677777777766653   3567788899999999999999999998


Q ss_pred             HHHHHHHHcCCC
Q 008257          236 ASIELIQNLSPH  247 (572)
Q Consensus       236 ~a~~~L~~Ls~~  247 (572)
                      .|..++..+-..
T Consensus       232 ~aial~nal~~~  243 (713)
T KOG2999|consen  232 CAIALLNALFRK  243 (713)
T ss_pred             HHHHHHHHHHhh
Confidence            888888887644

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=89.18  E-value=8.6  Score=40.76  Aligned_cols=139  Identities=12%  Similarity=0.141  Sum_probs=97.0

Q ss_pred             hhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCH----HHHHHHHHHHHHcCC
Q 008257          171 EDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQN----DLRLASIELIQNLSP  246 (572)
Q Consensus       171 ~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~----~v~~~a~~~L~~Ls~  246 (572)
                      +.....+++++.+++...|..+...|..++.+.    .....+..+.|+..|..+.++++.    ++...++.++..+-.
T Consensus        82 ~~~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~----~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elme  157 (713)
T KOG2999|consen   82 SHYAKRIMEILTEGNNISKMEALKELDSLSLDP----TFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELME  157 (713)
T ss_pred             hHHHHHHHHHHhCCCcHHHHHHHHHHhhccccH----HHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHh
Confidence            446778899999999999988999999998886    466778889999999999998764    566666777766654


Q ss_pred             CCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhh
Q 008257          247 HMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKS  316 (572)
Q Consensus       247 ~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~  316 (572)
                      +.- -..+.+..  .++.....+..-...-..+-..|+..|.++..+++...+.+.++--+..|+..|+.
T Consensus       158 hgv-vsW~~~~~--~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~  224 (713)
T KOG2999|consen  158 HGV-VSWESVSN--DFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQV  224 (713)
T ss_pred             hce-eeeeeccc--HHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHh
Confidence            411 00011111  12333333332111102456778899999988887777888999999999999986

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=89.11  E-value=2.6  Score=38.78  Aligned_cols=73  Identities=14%  Similarity=0.304  Sum_probs=55.8

Q ss_pred             HHhhhH-HHHHHhccc---------CCHHHHHHHHHHHHHhhcCCCcHHHHH-HcCChHHHHHHHhccCCCCCCcchHHH
Q 008257           73 VARTVG-SCLINIMKS---------GNMQAREAALKALNQISSCEPSAKVLI-HAGILPPLVKDLFTVGSNHLPMRLKEV  141 (572)
Q Consensus        73 i~~~g~-~~Lv~lL~s---------~~~~~~~~A~~aL~~Ls~~~~~~~~iv-~~G~i~~Lv~lL~s~~~~~~~~~~~~~  141 (572)
                      +.+.|| ..|+++|..         .+.+.+..+++||+.|..+......++ ..+++..|+..|.+++     ..++..
T Consensus       103 Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~-----~~~r~~  177 (187)
T PF06371_consen  103 FLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPN-----IKTRKL  177 (187)
T ss_dssp             H-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTS-----HHHHHH
T ss_pred             hccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCC-----HHHHHH
Confidence            334455 999988853         334778899999999998776677776 7899999999998753     789999


Q ss_pred             HHHHHHHHH
Q 008257          142 SATILANVV  150 (572)
Q Consensus       142 aa~~L~nla  150 (572)
                      +..+|+.+|
T Consensus       178 ~leiL~~lc  186 (187)
T PF06371_consen  178 ALEILAALC  186 (187)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998876

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.73  E-value=30  Score=40.32  Aligned_cols=225  Identities=14%  Similarity=0.138  Sum_probs=128.4

Q ss_pred             CCCCHHHHHHHHHHHHhhccCcchHHHHHHc--CCcHHHHHHHccCCHHHHHHHHHHHHHhcc--CcchhHHHHhhhH-H
Q 008257            5 KSENLLTVEKAEKTLANLEKCENNVRQMAEN--GRLQPLLTQILEGPQETKLSLAAFLGDLAL--NSDVKVLVARTVG-S   79 (572)
Q Consensus         5 ~s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~--g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~--~~~~k~~i~~~g~-~   79 (572)
                      ++.++-+|.++-++|..|+..+.........  -....|..-+++.+...|.....+|..+..  +.+....+.+ -+ .
T Consensus       664 ~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k-~I~E  742 (1176)
T KOG1248|consen  664 NSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPK-LIPE  742 (1176)
T ss_pred             ccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHH-HHHH
Confidence            5567889999999999999874443222111  122333344444555566667777777654  3344455443 34 5


Q ss_pred             HHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcC------ChHHHHHHHhccCCCCCCcchHHHHH--HHHHHHHh
Q 008257           80 CLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAG------ILPPLVKDLFTVGSNHLPMRLKEVSA--TILANVVN  151 (572)
Q Consensus        80 ~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G------~i~~Lv~lL~s~~~~~~~~~~~~~aa--~~L~nla~  151 (572)
                      .++.+ +.-+...++.|..+|..|..    .....+.|      .|...+..++.+-.+   ...+..|.  -++..+..
T Consensus       743 vIL~~-Ke~n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~g---d~~~~~as~Ivai~~il~  814 (1176)
T KOG1248|consen  743 VILSL-KEVNVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVG---DSTRVVASDIVAITHILQ  814 (1176)
T ss_pred             HHHhc-ccccHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcc---cHHHHHHHHHHHHHHHHH
Confidence            55555 88888899999999999884    22222333      566666666544101   12222222  23333332


Q ss_pred             cCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCH
Q 008257          152 SGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQN  231 (572)
Q Consensus       152 ~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~  231 (572)
                      ...+    .+|    .-.-.+.+..+...|.+.++++...|++.+..++..-..   ..-.-.....+|.+..|+.....
T Consensus       815 e~~~----~ld----~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe---~~l~~~~~~LL~sll~ls~d~k~  883 (1176)
T KOG1248|consen  815 EFKN----ILD----DETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPE---ECLSPHLEELLPSLLALSHDHKI  883 (1176)
T ss_pred             HHhc----ccc----HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCH---HHHhhhHHHHHHHHHHHHHhhhH
Confidence            2110    000    011233444555555688999999999999888765321   11111122367788887777677


Q ss_pred             HHHHHHHHHHHHcCCCCC
Q 008257          232 DLRLASIELIQNLSPHMG  249 (572)
Q Consensus       232 ~v~~~a~~~L~~Ls~~~~  249 (572)
                      .+|...-.+|..|.+..+
T Consensus       884 ~~r~Kvr~LlekLirkfg  901 (1176)
T KOG1248|consen  884 KVRKKVRLLLEKLIRKFG  901 (1176)
T ss_pred             HHHHHHHHHHHHHHHHhC
Confidence            788887777777765433

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=88.04  E-value=5.9  Score=38.34  Aligned_cols=99  Identities=12%  Similarity=0.077  Sum_probs=76.2

Q ss_pred             hHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHH-cchhhhhhhcCCCCchHHH
Q 008257          458 KVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERIL-RTDDIAYEVSGDPNVSTAL  536 (572)
Q Consensus       458 ~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~-~~~~~~~~~~~~~~~~~~L  536 (572)
                      .....|++.|-.++.-++   .+.....+..++..++++|....++.++..+..+|..+. .++.+.+.|...+|+. .+
T Consensus       106 ~li~~aL~vLQGl~LLHp---~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~-~v  181 (257)
T PF08045_consen  106 SLIALALRVLQGLCLLHP---PSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLS-TV  181 (257)
T ss_pred             HHHHHHHHHHHHHHHcCc---hHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHH-HH
Confidence            346668888888887655   456788899999999999954567888888888877666 6688888999888995 89


Q ss_pred             HHHhhcCC--chhHHHHHHHHHhhcc
Q 008257          537 VDAFQHAD--YRTRQIAERALKHIDK  560 (572)
Q Consensus       537 v~ll~~~~--~~~~~~Aa~aL~~L~~  560 (572)
                      +.++++.+  .++|-|...-|.-+-.
T Consensus       182 ~~llk~~~~~~~~r~K~~EFL~fyl~  207 (257)
T PF08045_consen  182 CSLLKSKSTDRELRLKCIEFLYFYLM  207 (257)
T ss_pred             HHHHccccccHHHhHHHHHHHHHHHc
Confidence            99998765  4676677666655443

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=87.98  E-value=39  Score=39.04  Aligned_cols=159  Identities=19%  Similarity=0.150  Sum_probs=88.5

Q ss_pred             CChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHH
Q 008257          217 GATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLG  296 (572)
Q Consensus       217 g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~  296 (572)
                      +.+..|..-|++.+..+|=.|++-+..++.+.+.+.++.+.      ...++++...++-..-+ -|.-+|+.++...--
T Consensus       341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi------~svid~~~p~e~~~aWH-gacLaLAELA~rGlL  413 (1133)
T KOG1943|consen  341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVI------GSVIDLFNPAEDDSAWH-GACLALAELALRGLL  413 (1133)
T ss_pred             HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHH------HHHHHhcCcCCchhHHH-HHHHHHHHHHhcCCc
Confidence            56778888888999999999999999999887777655544      34445444333201222 333444444331100


Q ss_pred             HHHHHHhCCChHHHHHHHhh-hccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcH
Q 008257          297 LTRQMLDEGAFGLIFSRVKS-IQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLD  375 (572)
Q Consensus       297 ~~~~l~~~g~l~~Lv~lL~~-~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~  375 (572)
                      .-..+  ..++|.++.-|.= ...|.+.   ....+++.|.-++|.++..  .+|.-.+-+...=+--+|+.-+.++ ..
T Consensus       414 lps~l--~dVvplI~kaL~Yd~~~G~~s---~G~~VRDaAcY~~WAf~Ra--ys~~~l~p~l~~L~s~LL~~AlFDr-ev  485 (1133)
T KOG1943|consen  414 LPSLL--EDVVPLILKALHYDVRRGQHS---VGQHVRDAACYVCWAFARA--YSPSDLKPVLQSLASALLIVALFDR-EV  485 (1133)
T ss_pred             chHHH--HHHHHHHHHHhhhhhhhcccc---cccchHHHHHHHHHHHHhc--CChhhhhHHHHHHHHHHHHHHhcCc-hh
Confidence            00000  1234444444431 1223221   2345677766666666644  3454444333322333455666677 78


Q ss_pred             HHHHHHHHHHHHhhh
Q 008257          376 KVQMVSATALENLSL  390 (572)
Q Consensus       376 ~vk~~Aa~aL~~ls~  390 (572)
                      ..|+.|+.|+....+
T Consensus       486 ncRRAAsAAlqE~VG  500 (1133)
T KOG1943|consen  486 NCRRAASAALQENVG  500 (1133)
T ss_pred             hHhHHHHHHHHHHhc
Confidence            899999999876654

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=87.63  E-value=3.9  Score=45.83  Aligned_cols=185  Identities=17%  Similarity=0.182  Sum_probs=112.5

Q ss_pred             HHHHHhcccCCHHHHHHHHHHHHHhhcCCCc---HH------HHH----HcCChHHHHHHHhccCCCCCCcchHHHHHHH
Q 008257           79 SCLINIMKSGNMQAREAALKALNQISSCEPS---AK------VLI----HAGILPPLVKDLFTVGSNHLPMRLKEVSATI  145 (572)
Q Consensus        79 ~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~---~~------~iv----~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~  145 (572)
                      ..|+++|+++  +.-..|++++.-+..+...   +.      .+.    =+..+|.|++...+.     +...|..=..+
T Consensus       818 ~klld~Ls~~--~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~-----~~~~K~~yl~~  890 (1030)
T KOG1967|consen  818 EKLLDLLSGP--STGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETA-----PGSQKHNYLEA  890 (1030)
T ss_pred             HHHHHhcCCc--cccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccC-----CccchhHHHHH
Confidence            6777777752  3333455555555544221   11      111    246789999888742     36778888888


Q ss_pred             HHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHH
Q 008257          146 LANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQF  225 (572)
Q Consensus       146 L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~l  225 (572)
                      |.++-.+-+..  ....      .-+...|.|++-|..++..+|...++++.-+......   +... .-.-.+|.++.+
T Consensus       891 LshVl~~vP~~--vllp------~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~t---L~t~-~~~Tlvp~lLsl  958 (1030)
T KOG1967|consen  891 LSHVLTNVPKQ--VLLP------QFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESET---LQTE-HLSTLVPYLLSL  958 (1030)
T ss_pred             HHHHHhcCCHH--hhcc------chhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccc---cchH-HHhHHHHHHHhc
Confidence            88887643321  1111      1244677788888899999999999988776554322   1111 001246666666


Q ss_pred             hcCCC---HHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHH
Q 008257          226 VEAPQ---NDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGL  286 (572)
Q Consensus       226 L~~~~---~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~  286 (572)
                      -.+.+   ..+|+.|+..|..|.+..+...-...+.  -.+..|.+.|+.+..  .+|..|+.+
T Consensus       959 s~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~--~Vl~al~k~LdDkKR--lVR~eAv~t 1018 (1030)
T KOG1967|consen  959 SSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRP--LVLRALIKILDDKKR--LVRKEAVDT 1018 (1030)
T ss_pred             CCCCCcchhHHHHHHHHHHHHHhccCCCcccccccH--HHHHHhhhccCcHHH--HHHHHHHHH
Confidence            55555   4789999999999987433322112222  356677888888775  788888765

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=87.54  E-value=41  Score=35.42  Aligned_cols=363  Identities=18%  Similarity=0.183  Sum_probs=184.0

Q ss_pred             HHHHHhcccCCH---HHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCC
Q 008257           79 SCLINIMKSGNM---QAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHD  155 (572)
Q Consensus        79 ~~Lv~lL~s~~~---~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~  155 (572)
                      |.|...|...+.   ...+..+.+|..++.+.+-.+.++- ..+..|-....+.    .+.+.-.....+|.++......
T Consensus         2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~i~~~~~~-~ll~kl~~~~~~~----~~~~~~~~il~tl~~~~~~~~~   76 (415)
T PF12460_consen    2 PALLALLPDSDSSTDSNYERILEALAALSTSPQILETLSI-RLLNKLSIVCQSE----SSSDYCHAILSTLQSLLEKKQE   76 (415)
T ss_pred             chHHhhCCCCCCcchhHHHHHHHHHHHHHCChhHHHHHHH-HHHHHHHHHhcCC----CChHHHHHHHHHHHHHHHhccc
Confidence            567777876544   5578999999999998776555433 3333333333321    1245556677777777654332


Q ss_pred             CCccccCCCccccchhhhHHHHHHHHhcC-----C--hhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhc-
Q 008257          156 FDSITVGPDNQTLVSEDIVHNLLHLISNT-----G--PTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVE-  227 (572)
Q Consensus       156 ~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~-----~--~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~-  227 (572)
                      ...   +..........+++.++++....     +  +.+-..+.+.+..+...-..  +-++.+     +..++.+.. 
T Consensus        77 ~~~---~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~--~~q~~~-----~~~~~~lf~~  146 (415)
T PF12460_consen   77 DKQ---FEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSP--EKQQEI-----LDELYSLFLS  146 (415)
T ss_pred             ccc---cchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCH--HHHHHH-----HHHHHHHHcc
Confidence            110   00111223344788888887532     1  23333334444433333221  122222     333333332 


Q ss_pred             ---------CC------CHHHHHHHHHHHHHcCCCCC-hhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCC
Q 008257          228 ---------AP------QNDLRLASIELIQNLSPHMG-HELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELP  291 (572)
Q Consensus       228 ---------~~------~~~v~~~a~~~L~~Ls~~~~-~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~  291 (572)
                               ..      ......-...++..+-+.-. .+.    .   ..+..++.+..+.++ +..+..+...++.+.
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~----~---~ll~~l~~~~~~~~~-~~~~~~~~~~la~Lv  218 (415)
T PF12460_consen  147 PKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDL----E---ELLQSLLNLALSSED-EFSRLAALQLLASLV  218 (415)
T ss_pred             ccccCCCCccccccccccccHHHHHHHHHHcCCcccCccCH----H---HHHHHHHHHHHcCCC-hHHHHHHHHHHHHHH
Confidence                     11      11112222334444443211 111    1   245667777666654 477777777777765


Q ss_pred             CC--cHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHh
Q 008257          292 ER--DLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELL  369 (572)
Q Consensus       292 ~~--~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL  369 (572)
                      ..  +.+..+     ..+..+...+...  ..   ........+..+|..-.+.-.  .+|...+      .+..|+++|
T Consensus       219 NK~~~~~~l~-----~~l~~~~~~~~~~--~~---~~~~~~~~~~~~Wi~KaLv~R--~~~~~~~------~~~~L~~lL  280 (415)
T PF12460_consen  219 NKWPDDDDLD-----EFLDSLLQSISSS--ED---SELRPQALEILIWITKALVMR--GHPLATE------LLDKLLELL  280 (415)
T ss_pred             cCCCChhhHH-----HHHHHHHhhhccc--CC---cchhHHHHHHHHHHHHHHHHc--CCchHHH------HHHHHHHHh
Confidence            43  111111     1222222222000  00   001111222222222222211  2444333      346677777


Q ss_pred             ccCCcHHHHHHHHHHHHHhhhhccc-cCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHH
Q 008257          370 QSNGLDKVQMVSATALENLSLESKN-LTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKL  448 (572)
Q Consensus       370 ~~~~~~~vk~~Aa~aL~~ls~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~L  448 (572)
                      .++   ++...||.++.-+....+. +.+. ..       ...+.+                  -++.|+   ...+|+|
T Consensus       281 ~~~---~~g~~aA~~f~il~~d~~~~l~~~-~~-------a~vklL------------------ykQR~F---~~~~p~L  328 (415)
T PF12460_consen  281 SSP---ELGQQAAKAFGILLSDSDDVLNKE-NH-------ANVKLL------------------YKQRFF---TQVLPKL  328 (415)
T ss_pred             CCh---hhHHHHHHHHhhHhcCcHHhcCcc-cc-------chhhhH------------------HhHHHH---HHHHHHH
Confidence            774   5777899999888765222 2110 00       000000                  012222   2378999


Q ss_pred             HHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhc-CChHHHHHHHhhcCCHHHHHHHHHHHHHHHcc
Q 008257          449 IALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEA-QGIKPILDVLLEKRTENLQRRAVWVVERILRT  519 (572)
Q Consensus       449 v~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~-g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~  519 (572)
                      ++-.+..+.+.+..-+.||..+..+-+   ... .+-+. .-+|.|++-| +.+|.+++..+..+|..+...
T Consensus       329 ~~~~~~~~~~~k~~yL~ALs~ll~~vP---~~v-l~~~l~~LlPLLlqsL-~~~~~~v~~s~L~tL~~~l~~  395 (415)
T PF12460_consen  329 LEGFKEADDEIKSNYLTALSHLLKNVP---KSV-LLPELPTLLPLLLQSL-SLPDADVLLSSLETLKMILEE  395 (415)
T ss_pred             HHHHhhcChhhHHHHHHHHHHHHhhCC---HHH-HHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHc
Confidence            999999888899999999999997643   111 11121 2356678888 588999999999999888855

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=87.45  E-value=21  Score=36.81  Aligned_cols=193  Identities=19%  Similarity=0.142  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHH-HHHHH-HHHHHHhccCcchhHHHHhhhH-HHHHHhcc
Q 008257           10 LTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQE-TKLSL-AAFLGDLALNSDVKVLVARTVG-SCLINIMK   86 (572)
Q Consensus        10 ~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~-~~~~a-a~~L~~l~~~~~~k~~i~~~g~-~~Lv~lL~   86 (572)
                      .+++.+.--|..-..+++++..++..|.++.+++.+...+.+ .-..+ +..+.-+..+..+-..+...+. ..++++|+
T Consensus        37 s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l~~~~~~~~ll~~Ll~  116 (361)
T PF07814_consen   37 SVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHLLLDRDSLRLLLKLLK  116 (361)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhhhhchhHHHHHHHHhc
Confidence            455555555555555899999999999999999998654433 32222 2223222222222222222222 33333333


Q ss_pred             --------------------------------------------cCCHHHHHHHHHHHHHhh---------c------CC
Q 008257           87 --------------------------------------------SGNMQAREAALKALNQIS---------S------CE  107 (572)
Q Consensus        87 --------------------------------------------s~~~~~~~~A~~aL~~Ls---------~------~~  107 (572)
                                                                  .....-+.-|..++..++         .      .+
T Consensus       117 ~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le~l~~~~~~~~~~~~t~~~~~~  196 (361)
T PF07814_consen  117 VDKSLDVPSDSDSSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLALESLVRSLREAGDLSETSSRAGE  196 (361)
T ss_pred             cccccccccchhhhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHHHHHHHHHHhhcccchhhhhhccc
Confidence                                                        011122445666666662         0      12


Q ss_pred             CcHHHHHHcCChHHHHHHHhc----cC-----CC--CCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHH
Q 008257          108 PSAKVLIHAGILPPLVKDLFT----VG-----SN--HLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHN  176 (572)
Q Consensus       108 ~~~~~iv~~G~i~~Lv~lL~s----~~-----~~--~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~  176 (572)
                      -.++.+.+.||+..++.++..    ..     .+  ......-+.+..+|.|.+......+...+...+..  .....+.
T Consensus       197 ~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~~nq~~l~~~~~~~--l~~~~~~  274 (361)
T PF07814_consen  197 WFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSEENQSYLLSHRSSL--LPQLLST  274 (361)
T ss_pred             cchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCccchHHHHHhcccc--hHHHHHH
Confidence            236677788999999999862    11     00  01112344577778877755443332222111100  0112223


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHccCCCC
Q 008257          177 LLHLISNTGPTIECKLLQVLVGLTSSPT  204 (572)
Q Consensus       177 Lv~lL~~~~~~~q~~a~~aL~~l~~~~~  204 (572)
                      ++..+....++++..+++.+.|++.++.
T Consensus       275 l~~~~~~~~~~~l~~~lrlllNlTn~n~  302 (361)
T PF07814_consen  275 LLRQCDDQVIQLLLLALRLLLNLTNNNP  302 (361)
T ss_pred             HHHHHHHHHHHHHHHHHHHeeeCCCCCc
Confidence            3333333445567789999999998763

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=87.35  E-value=5.4  Score=40.50  Aligned_cols=144  Identities=10%  Similarity=0.040  Sum_probs=111.4

Q ss_pred             CCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhcc-Ccchh-HHHHhh--hH-HH
Q 008257            6 SENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLAL-NSDVK-VLVART--VG-SC   80 (572)
Q Consensus         6 s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~-~~~~k-~~i~~~--g~-~~   80 (572)
                      .++++..-.+..+|+.....+.--+.+.+...+..+.++...++=++-..|-.++..+-. +...- ..+...  .. ..
T Consensus       134 y~~~dial~~g~mlRec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~  213 (335)
T PF08569_consen  134 YENPDIALNCGDMLRECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQK  213 (335)
T ss_dssp             GGSTTTHHHHHHHHHHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHH
T ss_pred             hcCccccchHHHHHHHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            456777788889999999888888888889999999999999999998888888887544 33322 233322  33 77


Q ss_pred             HHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHH----HcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCC
Q 008257           81 LINIMKSGNMQAREAALKALNQISSCEPSAKVLI----HAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGH  154 (572)
Q Consensus        81 Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv----~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~  154 (572)
                      .-.+|.|++-..++.+++.|+.|-.+..|...|.    +..-+..++.+|++.     +..+|..|..+.--.+.++.
T Consensus       214 ~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~-----sk~Iq~eAFhvFKvFVANp~  286 (335)
T PF08569_consen  214 YNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK-----SKNIQFEAFHVFKVFVANPN  286 (335)
T ss_dssp             HHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S------HHHHHHHHHHHHHHHH-SS
T ss_pred             HHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc-----chhhhHHHHHHHHHHHhCCC
Confidence            8899999999999999999999999999965543    556688888999865     37899999999988877643

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=86.91  E-value=6.6  Score=42.41  Aligned_cols=121  Identities=11%  Similarity=0.141  Sum_probs=75.2

Q ss_pred             hhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCc
Q 008257          329 TPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCA  408 (572)
Q Consensus       329 ~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~  408 (572)
                      ...+.-|+..+.++-.   .-|+.++.     ++..+++|..+. +..||..|...|-.++...+.+.            
T Consensus        36 ~k~K~Laaq~I~kffk---~FP~l~~~-----Ai~a~~DLcEDe-d~~iR~~aik~lp~~ck~~~~~v------------   94 (556)
T PF05918_consen   36 PKEKRLAAQFIPKFFK---HFPDLQEE-----AINAQLDLCEDE-DVQIRKQAIKGLPQLCKDNPEHV------------   94 (556)
T ss_dssp             HHHHHHHHHHHHHHHC---C-GGGHHH-----HHHHHHHHHT-S-SHHHHHHHHHHGGGG--T--T-H------------
T ss_pred             HHHHHHHHHHHHHHHh---hChhhHHH-----HHHHHHHHHhcc-cHHHHHHHHHhHHHHHHhHHHHH------------
Confidence            3456667777877775   36777665     467789999998 89999999999877765433211            


Q ss_pred             cccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcC
Q 008257          409 SIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQ  488 (572)
Q Consensus       409 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g  488 (572)
                                                       ...+..|++||.+.++.....+-.+|..|...++   .        +
T Consensus        95 ---------------------------------~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~---k--------~  130 (556)
T PF05918_consen   95 ---------------------------------SKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDP---K--------G  130 (556)
T ss_dssp             ---------------------------------HHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-H---H--------H
T ss_pred             ---------------------------------hHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCc---H--------H
Confidence                                             1266789999999888877788888887775433   1        1


Q ss_pred             ChHHHHHHHh--hcCCHHHHHHHHHHHH
Q 008257          489 GIKPILDVLL--EKRTENLQRRAVWVVE  514 (572)
Q Consensus       489 ~i~~L~~lL~--~~~~~~~~~~a~~~l~  514 (572)
                      .+..+..-+.  ..+++.+++++...|.
T Consensus       131 tL~~lf~~i~~~~~~de~~Re~~lkFl~  158 (556)
T PF05918_consen  131 TLTGLFSQIESSKSGDEQVRERALKFLR  158 (556)
T ss_dssp             HHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence            1222333331  1578889999887774

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=86.39  E-value=37  Score=35.66  Aligned_cols=150  Identities=11%  Similarity=0.100  Sum_probs=94.5

Q ss_pred             ChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcH---HHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHH
Q 008257          262 QLGSLIRVISENVGISKEQAAAVGLLAELPERDL---GLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSV  338 (572)
Q Consensus       262 ~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~---~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~a  338 (572)
                      +...+..++...++  +.|.+|+-....+++.++   ..++.+.++=|++-+-.+|.... +...  -.+.-.+.-++..
T Consensus        12 a~~~~~~L~~~k~D--~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~-~p~d--cpd~Vy~~i~itv   86 (698)
T KOG2611|consen   12 ALDDCLKLLKGKRD--EERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKS-GPGD--CPDDVYLQISITV   86 (698)
T ss_pred             chhhHHHHhcccCh--HHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCC-CCCC--CcHHHHHHHHHHH
Confidence            34456667777776  788889888888887533   34466889989999999998632 1111  1233445557777


Q ss_pred             HHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHH------HHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccc
Q 008257          339 LARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDK------VQMVSATALENLSLESKNLTKLPELPPSGFCASIFP  412 (572)
Q Consensus       339 L~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~------vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~  412 (572)
                      |..|+    .+|+....=---+.||.|.+.+..+.+++      +-..+-.+|..++...                    
T Consensus        87 LacFC----~~pElAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e--------------------  142 (698)
T KOG2611|consen   87 LACFC----RVPELASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAE--------------------  142 (698)
T ss_pred             HHHHh----CChhhccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCC--------------------
Confidence            88888    46664322111246899999999763333      4455556666555421                    


Q ss_pred             cccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHH
Q 008257          413 CFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVE  461 (572)
Q Consensus       413 ~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~  461 (572)
                                           .....++..|+|+.+.++-..++-....
T Consensus       143 ---------------------~G~~~Lia~G~~~~~~Q~y~~~~~~~d~  170 (698)
T KOG2611|consen  143 ---------------------AGLMTLIASGGLRVIAQMYELPDGSHDM  170 (698)
T ss_pred             ---------------------chhHHHHhcCchHHHHHHHhCCCCchhH
Confidence                                 1223477889999999887665544433

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=86.36  E-value=2.9  Score=38.69  Aligned_cols=96  Identities=10%  Similarity=0.005  Sum_probs=63.8

Q ss_pred             cCChHHHHHHhcC------CCHHHHHHHHHHHHHcCCCCChhHHHHHhcc-cCC--hhhHHhhhccCCCChHHHHHHHHH
Q 008257          216 SGATISLVQFVEA------PQNDLRLASIELIQNLSPHMGHELADALRGA-VGQ--LGSLIRVISENVGISKEQAAAVGL  286 (572)
Q Consensus       216 ~g~i~~Lv~lL~~------~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~-~g~--l~~Lv~lL~~~~~~~~~~~~A~~~  286 (572)
                      ...+..|+.++..      ....--.+.+.+|.|+++..  +.++.+... .+.  +..|+.++++.+.  .-|.-++++
T Consensus        51 ~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~--~gR~~~l~~~~~~~~l~kLl~ft~~~s~--iRR~Gva~~  126 (192)
T PF04063_consen   51 GFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLP--EGRQFFLDPQRYDGPLQKLLPFTEHKSV--IRRGGVAGT  126 (192)
T ss_pred             HHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCH--HHHHHHhCchhhhhHHHHHHHHhccCcH--HHHHHHHHH
Confidence            3467788887755      12345667788999999772  333445432 233  7788888888853  567788899


Q ss_pred             HhcCCCCcHHHHHHHHhC---CChHHHHHHHhh
Q 008257          287 LAELPERDLGLTRQMLDE---GAFGLIFSRVKS  316 (572)
Q Consensus       287 L~~L~~~~~~~~~~l~~~---g~l~~Lv~lL~~  316 (572)
                      |.|++.....+ ..+...   +.+|.|+--|..
T Consensus       127 IrNccFd~~~H-~~LL~~~~~~iLp~LLlPLaG  158 (192)
T PF04063_consen  127 IRNCCFDTDSH-EWLLSDDEVDILPYLLLPLAG  158 (192)
T ss_pred             HHHhhccHhHH-HHhcCchhhhhHHHHHhhccC
Confidence            99999965555 566553   566666666653

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.29  E-value=86  Score=37.88  Aligned_cols=71  Identities=18%  Similarity=0.178  Sum_probs=44.4

Q ss_pred             CcHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHh--hhH-HHHHHhcccCCHHHHHHHHHHHHHhhcCCCc
Q 008257           37 RLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVAR--TVG-SCLINIMKSGNMQAREAALKALNQISSCEPS  109 (572)
Q Consensus        37 ~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~--~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~  109 (572)
                      .||.|.++--+++..+|..|+..=..+..+.  |..+.+  ..+ .-|+.-|-+..=.+|+.++-||..|-...++
T Consensus       999 LIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~--k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~ 1072 (1702)
T KOG0915|consen  999 LIPRLYRYQYDPDKKVQDAMTSIWNALITDS--KKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPF 1072 (1702)
T ss_pred             hhHHHhhhccCCcHHHHHHHHHHHHHhccCh--HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCCh
Confidence            3566666656777878766654333344432  333332  244 5555555555668999999999999976555

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=86.11  E-value=5.6  Score=36.49  Aligned_cols=112  Identities=16%  Similarity=0.197  Sum_probs=72.2

Q ss_pred             chHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhc--------CCHHHHHHHHHHHHH
Q 008257          444 AVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEK--------RTENLQRRAVWVVER  515 (572)
Q Consensus       444 ~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~--------~~~~~~~~a~~~l~~  515 (572)
                      ....+++.|.+.....  ..+.-|........  ..-...+.+.||+..|+++|...        .+......++.+|..
T Consensus        67 ~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~--~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clka  142 (187)
T PF06371_consen   67 SPEWYIKKLKSRPSTS--KILKSLRVSLRTNP--ISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKA  142 (187)
T ss_dssp             HHHHHHHHHTTT--HH--HHHHHHHHHHHHS---HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHccCccH--HHHHHHHHHhccCC--chHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHH
Confidence            4556777776654332  33333333332221  11244667889999999988431        223567778899988


Q ss_pred             HHcchhhhhhhcCCCCchHHHHHHhhcCCchhHHHHHHHHHhhc
Q 008257          516 ILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHID  559 (572)
Q Consensus       516 l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~  559 (572)
                      |+++......+.........|+..|.+.+..++..|...|+-++
T Consensus       143 l~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  143 LMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             HTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred             HHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            88887767666666566678999999999999999999988764

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=83.00  E-value=62  Score=33.56  Aligned_cols=171  Identities=12%  Similarity=0.172  Sum_probs=104.7

Q ss_pred             HHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhc----c-------CC-C----CCCcc--------hhhHHHHHHHH
Q 008257          283 AVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQ----L-------GE-T----RGSRF--------VTPFLEGLLSV  338 (572)
Q Consensus       283 A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~----~-------~~-~----~~~~~--------~~~~~e~a~~a  338 (572)
                      |+.+|..+....+.....+.+.||+..+++.|+..-    .       +. .    .....        ...++...+..
T Consensus         4 av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~lLk~   83 (379)
T PF06025_consen    4 AVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEENKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSLLKF   83 (379)
T ss_pred             HHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccccCCCCCCCCCcccccccccccCHHHHHHHHHHHHH
Confidence            556666666556565678899999999999887521    1       00 0    00001        12233344444


Q ss_pred             HHHHhc-cCCCChHHHHHHHH-cCchHHHHHHhccC--CcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccc
Q 008257          339 LARVTF-VLSDEPDAIALCCE-HNLAALFIELLQSN--GLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCF  414 (572)
Q Consensus       339 L~~l~~-~~~~~~~~~~~i~~-~g~i~~Lv~lL~~~--~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~  414 (572)
                      +.++.. .. ...+..+-+.+ ......|...++++  ..+.+-..|+..+..+..+.+..                  +
T Consensus        84 l~~~~~~~~-~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~------------------~  144 (379)
T PF06025_consen   84 LSHAMQHSG-GFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTS------------------F  144 (379)
T ss_pred             HHHHhccCC-CcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCch------------------h
Confidence            444443 10 12223333445 55566677777765  24556666777777665543211                  0


Q ss_pred             cCCCccccccccccCccCccchhhhhhccchHHHHHhhc-C---CCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCCh
Q 008257          415 SKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLD-H---TNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGI  490 (572)
Q Consensus       415 ~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~-~---~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i  490 (572)
                                            -.+.++|.++.+++-+. .   ++.++....-.+|+-|+.+.    .+.+.+.+.+.+
T Consensus       145 ----------------------~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~----~Gl~~~~~~~~l  198 (379)
T PF06025_consen  145 ----------------------SILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNN----RGLEKVKSSNPL  198 (379)
T ss_pred             ----------------------HHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCH----HHHHHHHhcChH
Confidence                                  02558899998888887 3   45677777777888888763    688999999999


Q ss_pred             HHHHHHHh
Q 008257          491 KPILDVLL  498 (572)
Q Consensus       491 ~~L~~lL~  498 (572)
                      +.+++++.
T Consensus       199 ~~~f~if~  206 (379)
T PF06025_consen  199 DKLFEIFT  206 (379)
T ss_pred             HHHHHHhC
Confidence            99999983

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=82.97  E-value=15  Score=39.72  Aligned_cols=121  Identities=17%  Similarity=0.186  Sum_probs=78.3

Q ss_pred             cCCHHHHHHHHHHHHHhcc-CcchhHHHHhhhHHHHHHhcccCCHHHHHHHHHHHHHhhcC-CCcHHHHHHcCChHHHHH
Q 008257           47 EGPQETKLSLAAFLGDLAL-NSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSC-EPSAKVLIHAGILPPLVK  124 (572)
Q Consensus        47 ~~~~~~~~~aa~~L~~l~~-~~~~k~~i~~~g~~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~-~~~~~~iv~~G~i~~Lv~  124 (572)
                      .|+...|..||..+.+... .++.    .+..+..+++|+..++..+|..|++.|-.++.+ ++....+     +..|++
T Consensus        33 kg~~k~K~Laaq~I~kffk~FP~l----~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv-----aDvL~Q  103 (556)
T PF05918_consen   33 KGSPKEKRLAAQFIPKFFKHFPDL----QEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV-----ADVLVQ  103 (556)
T ss_dssp             GS-HHHHHHHHHHHHHHHCC-GGG----HHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH-----HHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHhhChhh----HHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH-----HHHHHH
Confidence            4778899999999998766 3332    233458899999999999999999999999986 4555554     457899


Q ss_pred             HHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHh---cCChhHHHHHHHHHH
Q 008257          125 DLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLIS---NTGPTIECKLLQVLV  197 (572)
Q Consensus       125 lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~---~~~~~~q~~a~~aL~  197 (572)
                      +|.+..     +.-....-.+|..|-..                -..+.+..++..+.   +++..++++++..|.
T Consensus       104 lL~tdd-----~~E~~~v~~sL~~ll~~----------------d~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~  158 (556)
T PF05918_consen  104 LLQTDD-----PVELDAVKNSLMSLLKQ----------------DPKGTLTGLFSQIESSKSGDEQVRERALKFLR  158 (556)
T ss_dssp             HTT--------HHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred             HHhccc-----HHHHHHHHHHHHHHHhc----------------CcHHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence            997631     22233344455545432                22566777777776   677788999888775

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=82.66  E-value=24  Score=42.19  Aligned_cols=111  Identities=17%  Similarity=0.173  Sum_probs=75.5

Q ss_pred             CChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHH
Q 008257          261 GQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLA  340 (572)
Q Consensus       261 g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~  340 (572)
                      +.+..++..|..+..  .+|..|+.+|+.+...++.+.   ....+-..+..-+.+          ....++|.|+..++
T Consensus       816 ~yLk~Il~~l~e~~i--alRtkAlKclS~ive~Dp~vL---~~~dvq~~Vh~R~~D----------ssasVREAaldLvG  880 (1692)
T KOG1020|consen  816 PYLKLILSVLGENAI--ALRTKALKCLSMIVEADPSVL---SRPDVQEAVHGRLND----------SSASVREAALDLVG  880 (1692)
T ss_pred             HHHHHHHHHhcCchH--HHHHHHHHHHHHHHhcChHhh---cCHHHHHHHHHhhcc----------chhHHHHHHHHHHh
Confidence            678889999997664  899999999999988776542   222222223333333          24678999999999


Q ss_pred             HHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhcccc
Q 008257          341 RVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNL  395 (572)
Q Consensus       341 ~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~  395 (572)
                      ++.-.   +++.....     ...+.+=+.++ +.-||+++...++.+....++.
T Consensus       881 rfvl~---~~e~~~qy-----Y~~i~erIlDt-gvsVRKRvIKIlrdic~e~pdf  926 (1692)
T KOG1020|consen  881 RFVLS---IPELIFQY-----YDQIIERILDT-GVSVRKRVIKILRDICEETPDF  926 (1692)
T ss_pred             hhhhc---cHHHHHHH-----HHHHHhhcCCC-chhHHHHHHHHHHHHHHhCCCh
Confidence            88753   66654433     23344444455 6789999999999998765544

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=82.56  E-value=2.5  Score=37.84  Aligned_cols=91  Identities=16%  Similarity=0.153  Sum_probs=64.0

Q ss_pred             HHHHHHHHhhccC-cchH-HHHHHcCCcHHHHHHHc--cCCHHHHHHHHHHHHHhccCcchhHHHHhhhHHHHHHhcc-c
Q 008257           13 EKAEKTLANLEKC-ENNV-RQMAENGRLQPLLTQIL--EGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMK-S   87 (572)
Q Consensus        13 ~~A~~~L~~L~~~-~~n~-~~i~~~g~i~~Lv~~L~--~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~~~Lv~lL~-s   87 (572)
                      ..+..++..|-.. ++-- ..+...|.++.++.+..  ..+...+..++.+|..-+.+...|..|.+.|.+.|-++++ +
T Consensus        61 i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~  140 (157)
T PF11701_consen   61 IIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNS  140 (157)
T ss_dssp             HHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTC
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccc
Confidence            3455566665542 2222 33336688888888888  6777788888888876666777788889999999999996 5


Q ss_pred             CCHH-HHHHHHHHHHHh
Q 008257           88 GNMQ-AREAALKALNQI  103 (572)
Q Consensus        88 ~~~~-~~~~A~~aL~~L  103 (572)
                      ++.. +|..|+-+|.+|
T Consensus       141 ~~~~~ir~~A~v~L~Kl  157 (157)
T PF11701_consen  141 KDDSEIRVLAAVGLCKL  157 (157)
T ss_dssp             C-HH-CHHHHHHHHHHC
T ss_pred             cchHHHHHHHHHHHhcC
Confidence            5555 788888877764

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=82.05  E-value=39  Score=37.25  Aligned_cols=172  Identities=16%  Similarity=0.144  Sum_probs=105.8

Q ss_pred             CCCCCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhH-HHH
Q 008257            3 SSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVG-SCL   81 (572)
Q Consensus         3 ~~~s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~L   81 (572)
                      .+.|.|..++...+.+|..+..+..-+..-+=.+....+..+|.+..+.+|++|.-+|..+--++..-    +.-+ ..+
T Consensus        93 g~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de----e~~v~n~l  168 (892)
T KOG2025|consen   93 GTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE----ECPVVNLL  168 (892)
T ss_pred             cccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC----cccHHHHH
Confidence            45678888888888888888764444555555667888889999999999999999999887422110    1123 667


Q ss_pred             HHhccc-CCHHHHHHHHHHHHHhhcCCCcHHHHHH-----cCChHHHH-------------------HHHhccCCCCCCc
Q 008257           82 INIMKS-GNMQAREAALKALNQISSCEPSAKVLIH-----AGILPPLV-------------------KDLFTVGSNHLPM  136 (572)
Q Consensus        82 v~lL~s-~~~~~~~~A~~aL~~Ls~~~~~~~~iv~-----~G~i~~Lv-------------------~lL~s~~~~~~~~  136 (572)
                      +.+++. ++++++..|+.   +++.++...-.|++     .|++..|+                   .+|.-+ -++...
T Consensus       169 ~~liqnDpS~EVRRaaLs---nI~vdnsTlp~IveRarDV~~anRrlvY~r~lpkid~r~lsi~krv~Llewg-LnDRe~  244 (892)
T KOG2025|consen  169 KDLIQNDPSDEVRRAALS---NISVDNSTLPCIVERARDVSGANRRLVYERCLPKIDLRSLSIDKRVLLLEWG-LNDREF  244 (892)
T ss_pred             HHHHhcCCcHHHHHHHHH---hhccCcccchhHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHh-hhhhhh
Confidence            777765 67788887665   56655554444442     23333333                   223221 122234


Q ss_pred             chHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhc-CChhHHHHHHHHHHH
Q 008257          137 RLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISN-TGPTIECKLLQVLVG  198 (572)
Q Consensus       137 ~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~-~~~~~q~~a~~aL~~  198 (572)
                      .++..++..|..=      |-.          ...|-|+-+++-|+- -+.++...++.+|..
T Consensus       245 sVk~A~~d~il~~------Wl~----------~~dgni~ElL~~ldvsnss~vavk~lealf~  291 (892)
T KOG2025|consen  245 SVKGALVDAILSG------WLR----------FSDGNILELLERLDVSNSSEVAVKALEALFS  291 (892)
T ss_pred             HHHHHHHHHHHHH------Hhh----------hccccHHHHHHHhccccchHHHHHHHHHHHH
Confidence            5555555554431      111          124567777777764 445788888888776

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=81.59  E-value=27  Score=36.18  Aligned_cols=102  Identities=13%  Similarity=0.164  Sum_probs=73.3

Q ss_pred             CChhhHHhhhccCCCC-hHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHH
Q 008257          261 GQLGSLIRVISENVGI-SKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVL  339 (572)
Q Consensus       261 g~l~~Lv~lL~~~~~~-~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL  339 (572)
                      ..+..|..++++.... ..+-..|+.+++.+...+|..-..+.++|.++.+++.+...  + .-   ...+++-..-.++
T Consensus       106 ~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~--~-i~---~s~e~l~~lP~~l  179 (379)
T PF06025_consen  106 SLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAK--G-IL---PSSEVLTSLPNVL  179 (379)
T ss_pred             hHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhcc--C-CC---CcHHHHHHHHHHH
Confidence            3455677777777641 36777888999999888888888999999999999988721  1 11   1233343333444


Q ss_pred             HHHhccCCCChHHHHHHHHcCchHHHHHHhccC
Q 008257          340 ARVTFVLSDEPDAIALCCEHNLAALFIELLQSN  372 (572)
Q Consensus       340 ~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~  372 (572)
                      .-++    -|..-.+.+.+.+.++.|.+++.++
T Consensus       180 ~Aic----LN~~Gl~~~~~~~~l~~~f~if~s~  208 (379)
T PF06025_consen  180 SAIC----LNNRGLEKVKSSNPLDKLFEIFTSP  208 (379)
T ss_pred             hHHh----cCHHHHHHHHhcChHHHHHHHhCCH
Confidence            4445    4788888899999999999999886

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=80.25  E-value=17  Score=40.12  Aligned_cols=98  Identities=18%  Similarity=0.072  Sum_probs=65.7

Q ss_pred             CChhhHHhh-hccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHH
Q 008257          261 GQLGSLIRV-ISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVL  339 (572)
Q Consensus       261 g~l~~Lv~l-L~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL  339 (572)
                      ++|..|+.. .+..++  +++.+|+-+|+-....+++.         +|..|++|..+         .+.-++-.++-||
T Consensus       554 kair~lLh~aVsD~nD--DVrRaAVialGFVl~~dp~~---------~~s~V~lLses---------~N~HVRyGaA~AL  613 (929)
T KOG2062|consen  554 KAIRRLLHVAVSDVND--DVRRAAVIALGFVLFRDPEQ---------LPSTVSLLSES---------YNPHVRYGAAMAL  613 (929)
T ss_pred             hhHHHhhcccccccch--HHHHHHHHHheeeEecChhh---------chHHHHHHhhh---------cChhhhhhHHHHH
Confidence            456666666 344454  89999999999888777766         57888899763         3445677788888


Q ss_pred             HHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhh
Q 008257          340 ARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLS  389 (572)
Q Consensus       340 ~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls  389 (572)
                      .-.+.+    ...+..      |.+|=-+.+++ .+-||+-|..+++-+.
T Consensus       614 GIaCAG----tG~~eA------i~lLepl~~D~-~~fVRQgAlIa~amIm  652 (929)
T KOG2062|consen  614 GIACAG----TGLKEA------INLLEPLTSDP-VDFVRQGALIALAMIM  652 (929)
T ss_pred             hhhhcC----CCcHHH------HHHHhhhhcCh-HHHHHHHHHHHHHHHH
Confidence            876643    333333      23333344566 7889988888887653

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=80.15  E-value=68  Score=36.43  Aligned_cols=130  Identities=16%  Similarity=0.144  Sum_probs=84.4

Q ss_pred             hhhhHHHHHHHHhc--------CChhHHHHHHHHHHHccCCCCccHHHHHHHHh--------cCChHHHHHHhcCC----
Q 008257          170 SEDIVHNLLHLISN--------TGPTIECKLLQVLVGLTSSPTTVLSVVSAIKS--------SGATISLVQFVEAP----  229 (572)
Q Consensus       170 ~~~~i~~Lv~lL~~--------~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~--------~g~i~~Lv~lL~~~----  229 (572)
                      ..+++..++.+...        +..++-..|+.+|+-+...|.    ++..+.+        ..||..++.--...    
T Consensus       599 kls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~----iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~  674 (1516)
T KOG1832|consen  599 KLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPD----IQKALAHATLSNNRAYDGIAIILDAANGSNSIV  674 (1516)
T ss_pred             HhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecch----HHHHHHHHHhhcccccCceEEEeeccccccccc
Confidence            44566677777652        234566788888888887774    4555443        23666555544322    


Q ss_pred             CHHHHHHHHHHHHHcCCCCC----------------------------------hhHHHHHhcccCChhhHHhhhccCCC
Q 008257          230 QNDLRLASIELIQNLSPHMG----------------------------------HELADALRGAVGQLGSLIRVISENVG  275 (572)
Q Consensus       230 ~~~v~~~a~~~L~~Ls~~~~----------------------------------~~~~~~i~~~~g~l~~Lv~lL~~~~~  275 (572)
                      |++++..|+..+-|+.-..+                                  +..++.++.. .+|..|+++|....+
T Consensus       675 Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~n-dGIkiLl~Ll~~k~P  753 (1516)
T KOG1832|consen  675 DPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGN-DGIKILLKLLQYKNP  753 (1516)
T ss_pred             CHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcC-ccHHHHHHHHhccCC
Confidence            67899999988877631110                                  1123345555 789999999987664


Q ss_pred             C---hHHHHHHHHHHhcCCCCcHHHHHHHHhCC
Q 008257          276 I---SKEQAAAVGLLAELPERDLGLTRQMLDEG  305 (572)
Q Consensus       276 ~---~~~~~~A~~~L~~L~~~~~~~~~~l~~~g  305 (572)
                      .   ..++.-|..+|.-|+. ++.+++.+.+.-
T Consensus       754 ~t~aD~IRalAc~~L~GLaR-~~tVrQIltKLp  785 (1516)
T KOG1832|consen  754 PTTADCIRALACRVLLGLAR-DDTVRQILTKLP  785 (1516)
T ss_pred             CCcHHHHHHHHHHHHhcccc-CcHHHHHHHhCc
Confidence            2   2688899999999998 667777665543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	572
2jdq_A	450	C-Terminal Domain Of Influenza A Virus Polymerase P		2e-04
3tj3_A	447	Structure Of Importin A5 Bound To The N-Terminus Of		2e-04

>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2 Subunit In Complex With Human Importin Alpha5 Length = 450

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 4/119 (3%)
Query: 439 LLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLL 498
           +++     +L+ LL H + KVV  +L A+  ++  G DI+  V++ C A         LL
Sbjct: 230 VIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVT-GDDIQTQVILNCSALQSL---LHLL 285
Query: 499 EKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKH 557
               E++++ A W +  I   +    +   D N+  AL+   Q A++RTR+ A  A+ +
Sbjct: 286 SSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITN 344

>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50 Length = 447

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 4/119 (3%)
Query: 439 LLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLL 498
           +++     +L+ LL H + KVV  +L A+  ++  G DI+  V++ C A         LL
Sbjct: 227 VIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVT-GDDIQTQVILNCSALQSL---LHLL 282
Query: 499 EKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKH 557
               E++++ A W +  I   +    +   D N+  AL+   Q A++RTR+ A  A+ +
Sbjct: 283 SSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITN 341

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	572
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	5e-30
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-14
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	7e-29
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-14
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	6e-10
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	5e-07
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-27
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	5e-16
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-13
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	4e-17
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	2e-08
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	6e-16
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-12
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	6e-09
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	1e-06
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	1e-15
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	3e-14
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	9e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-13
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-11
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-09
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	9e-08
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	6e-06
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	1e-10
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-07
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	3e-05
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	3e-10
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	7e-07
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	2e-06
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	4e-10
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	3e-09
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	6e-06
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	4e-04
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	7e-10
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	1e-07
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	2e-06
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	3e-05
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	7e-10
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	6e-07
3nmz_A	458	APC variant protein; protein-protein complex, arma	9e-09
3nmz_A	458	APC variant protein; protein-protein complex, arma	7e-08
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	2e-05
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	7e-05
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	2e-04
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	6e-04

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  124 bits (312), Expect = 5e-30
 Identities = 86/587 (14%), Positives = 193/587 (32%), Gaps = 66/587 (11%)

Query: 5   KSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAA--FLGD 62
             E+ + V KA   +  L K E +   +  + ++   + + ++   + + +      L +
Sbjct: 160 NDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHN 219

Query: 63  LALNSDVKVLVARTVG-SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLI-HAGILP 120
           L+ + +  + + ++ G   L+N++ S        A+  L+ +   +  AK+ +  AG L 
Sbjct: 220 LSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQ 279

Query: 121 PLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLV-SEDIVHNLLH 179
            +V  L     N   ++   ++   L  +              +++ ++ +      L++
Sbjct: 280 KMVALL-----NKTNVKFLAITTDCLQILAYG---------NQESKLIILASGGPQALVN 325

Query: 180 LI-SNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASI 238
           ++ + T   +     +VL  L+       S   AI  +G   +L   +  P   L    +
Sbjct: 326 IMRTYTYEKLLWTTSRVLKVLSVCS----SNKPAIVEAGGMQALGLHLTDPSQRLVQNCL 381

Query: 239 ELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLT 298
             ++NLS        + + G +G L  L+     NV        A G+L+ L   +    
Sbjct: 382 WTLRNLSDA--ATKQEGMEGLLGTLVQLLGSDDINV-----VTCAAGILSNLTCNNYKNK 434

Query: 299 RQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCE 358
             +   G    +   V+++     R         E  +  L  +T    D   A      
Sbjct: 435 MMVCQVGGIEAL---VRTVLRAGDREDI-----TEPAICALRHLTSRHQDAEMAQNAVRL 486

Query: 359 HNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPE---LPP------------ 403
           H    + ++LL       +   +   + NL+L   N   L E   +P             
Sbjct: 487 HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDT 546

Query: 404 -------SGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTN 456
                        +     ++ V      LH     +     +   + +   + LL    
Sbjct: 547 QRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPI 606

Query: 457 EKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERI 516
           E +   +   L  +  D    ++    +       P+ + LL  R E +   A  V+ R+
Sbjct: 607 ENIQRVAAGVLCELAQD----KEAAEAIEAEGATAPLTE-LLHSRNEGVATYAAAVLFRM 661

Query: 517 LRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHIDKIPN 563
                  Y+      ++++L          T  +        + +  
Sbjct: 662 SEDKPQDYKKRLSVELTSSLFRTEPMTWNETGDLGLDIGAQGEPLGY 708

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 75.5 bits (185), Expect = 2e-14
 Identities = 65/516 (12%), Positives = 147/516 (28%), Gaps = 90/516 (17%)

Query: 50  QETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPS 109
            E    L   + +L    D   L  R +   L  ++   +      A   ++Q+S  E S
Sbjct: 125 AEPSQMLKHAVVNLINYQDDAELATRAI-PELTKLLNDEDQVVVNKAAVMVHQLSKKEAS 183

Query: 110 -AKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTL 168
              ++    ++  +V+ +     N   +     ++  L N          ++   +    
Sbjct: 184 RHAIMRSPQMVSAIVRTM----QNTNDVETARCTSGTLHN----------LSHHREGLLA 229

Query: 169 VSED-IVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVE 227
           + +   +  L++++ +   ++    +  L  L            A++ +G    +V  + 
Sbjct: 230 IFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQE---GAKMAVRLAGGLQKMVALLN 286

Query: 228 APQNDLRLASIELIQNLSPHMGHELADALR--GAVGQLGSLIRVISENVGISKEQAAAV- 284
                    + + +Q L+ +   E    +   G    L +++R  +          + V 
Sbjct: 287 KTNVKFLAITTDCLQILA-YGNQESKLIILASGGPQALVNIMR--TYTYEKLLWTTSRVL 343

Query: 285 GLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTF 344
            +L+            +++ G    +               R V   L  L +       
Sbjct: 344 KVLSVCSS----NKPAIVEAGGMQAL------GLHLTDPSQRLVQNCLWTLRN------- 386

Query: 345 VLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPS 404
            LSD            L    ++LL S     V   +A  L NL+  +     +      
Sbjct: 387 -LSDAATKQEG--MEGLLGTLVQLLGS-DDINVVTCAAGILSNLTCNNYKNKMM------ 436

Query: 405 GFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALL--DHTNEKVVEA 462
                                             + +   +E L+  +      E + E 
Sbjct: 437 ----------------------------------VCQVGGIEALVRTVLRAGDREDITEP 462

Query: 463 SLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDI 522
           ++ AL  +     D E     +    G+  ++  LL   +     +A   + R L     
Sbjct: 463 AICALRHLTSRHQDAEMAQNAVRLHYGLPVVVK-LLHPPSHWPLIKATVGLIRNLALCPA 521

Query: 523 AYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHI 558
            +    +      LV     A   T++         
Sbjct: 522 NHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQ 557

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  120 bits (302), Expect = 7e-29
 Identities = 87/579 (15%), Positives = 193/579 (33%), Gaps = 69/579 (11%)

Query: 5   KSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAA--FLGD 62
             E+ + V KA   +  L K E +   +  + ++   + + ++   + + +      L +
Sbjct: 24  NDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHN 83

Query: 63  LALNSDVKVLVARTVG-SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLI-HAGILP 120
           L+ + +  + + ++ G   L+ ++ S        A+  L+ +   +  AK+ +  AG L 
Sbjct: 84  LSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQ 143

Query: 121 PLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLV-SEDIVHNLLH 179
            +V  L     N   ++   ++   L  +              +++ ++ +      L++
Sbjct: 144 KMVALL-----NKTNVKFLAITTDCLQILAYGN---------QESKLIILASGGPQALVN 189

Query: 180 LI-SNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASI 238
           ++ + T   +     +VL  L+       S   AI  +G   +L   +  P   L    +
Sbjct: 190 IMRTYTYEKLLWTTSRVLKVLSVCS----SNKPAIVEAGGMQALGLHLTDPSQRLVQNCL 245

Query: 239 ELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLT 298
             ++NLS     +      G +G L  L+     NV        A G+L+ L   +    
Sbjct: 246 WTLRNLSDAATKQEGME--GLLGTLVQLLGSDDINV-----VTCAAGILSNLTCNNYKNK 298

Query: 299 RQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCE 358
             +   G    I + V+++     R         E  +  L  +T    +   A      
Sbjct: 299 MMVCQVGG---IEALVRTVLRAGDREDI-----TEPAICALRHLTSRHQEAEMAQNAVRL 350

Query: 359 HNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPE---LPP------------ 403
           H    + ++LL       +   +   + NL+L   N   L E   +P             
Sbjct: 351 HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDT 410

Query: 404 ------SGFCASIFPCFSKQPVITGLCRLHRGLCSLKET-FCLLEGHAVEKLIALLDHTN 456
                  G           + ++ G       L         +   + +   + LL    
Sbjct: 411 QRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPI 470

Query: 457 EKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERI 516
           E +   +   L  +  D    ++    +       P+ + LL  R E +   A  V+ R+
Sbjct: 471 ENIQRVAAGVLCELAQD----KEAAEAIEAEGATAPLTE-LLHSRNEGVATYAAAVLFRM 525

Query: 517 LRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERAL 555
                  Y+      ++++L   F+       + A+  L
Sbjct: 526 SEDKPQDYKKRLSVELTSSL---FRTEPMAWNETADLGL 561

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 75.7 bits (186), Expect = 2e-14
 Identities = 82/533 (15%), Positives = 171/533 (32%), Gaps = 81/533 (15%)

Query: 81  LINIMKSGNMQAREAALKALNQISSCEPSAKVLI-HAGILPPLVKDLFTVGSNHLPMRLK 139
           L  ++   +      A   ++Q+S  E S   ++    ++  +V+ +     N   +   
Sbjct: 19  LTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTM----QNTNDVETA 74

Query: 140 EVSATILANVVNSGHDFDSITVGPDNQTLV------SEDIVHN----LLHLISNTGP--- 186
             +A  L N+ +      +I        LV       + ++      L +L+ +      
Sbjct: 75  RCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM 134

Query: 187 -TIECKLLQVLVGLTSSPTTVLSVVSA----------------IKSSGATISLVQFVEAP 229
                  LQ +V L +        ++                 I +SG   +LV  +   
Sbjct: 135 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTY 194

Query: 230 QN-DLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLA 288
               L   +  +++ LS    ++ A    G +  LG  +   S+ +         +  L 
Sbjct: 195 TYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRL-----VQNCLWTLR 249

Query: 289 ELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSD 348
            L +     T+Q   EG  G +   V+ +   +            G+LS L       ++
Sbjct: 250 NLSD---AATKQEGMEGLLGTL---VQLLGSDDINVVTCAA----GILSNLTC-----NN 294

Query: 349 EPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFC- 407
             + + +C    + AL   +L++   + +   +  AL +L+   +            +  
Sbjct: 295 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGL 354

Query: 408 ---ASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGH-AVEKLIALLDHTNEKVV-EA 462
                +    S  P+I     L R L         L    A+ +L+ LL   ++      
Sbjct: 355 PVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRT 414

Query: 463 SLAALSTVIDDGVDIEQGV-----------------MVLCEAQGIKPILDVLLEKRTENL 505
           S+        +GV +E+ V                 +V+     I   +  LL    EN+
Sbjct: 415 SMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQ-LLYSPIENI 473

Query: 506 QRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHI 558
           QR A  V+  + +  + A  +      +  L +     +      A   L  +
Sbjct: 474 QRVAAGVLCELAQDKEAAEAI-EAEGATAPLTELLHSRNEGVATYAAAVLFRM 525

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 61.1 bits (148), Expect = 6e-10
 Identities = 61/459 (13%), Positives = 132/459 (28%), Gaps = 52/459 (11%)

Query: 106 CEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDN 165
                   +    +P L K L           +   +A ++  +        +I      
Sbjct: 3   INYQDDAELATRAIPELTKLL---NDEDQ--VVVNKAAVMVHQLSKKEASRHAI------ 51

Query: 166 QTLVSEDIVHNLLHLISNTG-PTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQ 224
             + S  +V  ++  + NT            L  L+     +L++  +    G   +LV+
Sbjct: 52  --MRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKS----GGIPALVK 105

Query: 225 FVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAV 284
            + +P + +   +I  + NL   +  E A       G L  ++ ++++            
Sbjct: 106 MLGSPVDSVLFYAITTLHNLL--LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTD- 162

Query: 285 GLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTF 344
             L  L   +      +L  G    + + +++                E LL   +RV  
Sbjct: 163 -CLQILAYGNQESKLIILASGGPQALVNIMRT-------------YTYEKLLWTTSRVLK 208

Query: 345 VLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPS 404
           VLS          E          L      ++       L NLS  +     +      
Sbjct: 209 VLSVCSSNKPAIVEAGGMQALGLHLTD-PSQRLVQNCLWTLRNLSDAATKQEGM-----E 262

Query: 405 GFCASIFPCFS------KQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALL--DHTN 456
           G   ++                  L  L     + K    + +   +E L+  +      
Sbjct: 263 GLLGTLVQLLGSDDINVVTCAAGILSNL--TCNNYKNKMMVCQVGGIEALVRTVLRAGDR 320

Query: 457 EKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERI 516
           E + E ++ AL  +     + E     +    G+  ++ +L       L +  V ++  +
Sbjct: 321 EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 380

Query: 517 LRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERAL 555
                    +  +      LV     A   T++      
Sbjct: 381 ALCPANHAPL-REQGAIPRLVQLLVRAHQDTQRRTSMGG 418

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 51.9 bits (124), Expect = 5e-07
 Identities = 47/359 (13%), Positives = 112/359 (31%), Gaps = 45/359 (12%)

Query: 212 AIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVI- 270
           A  ++ A   L + +      +   +  ++  LS         A+  +   + +++R + 
Sbjct: 9   AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLS--KKEASRHAIMRSPQMVSAIVRTMQ 66

Query: 271 -SENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVT 329
            + +V  ++  A  +  L+   E        +   G    +   + S             
Sbjct: 67  NTNDVETARCTAGTLHNLSHHRE----GLLAIFKSGGIPALVKMLGS------------- 109

Query: 330 PFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLS 389
           P    L   +  +  +L  +  A             + LL      K   ++   L+ L+
Sbjct: 110 PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFLAITTDCLQILA 168

Query: 390 LESKNLTK-------LPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKE-TFCLLE 441
             ++              L       +I   ++ + ++    R+ + L         ++E
Sbjct: 169 YGNQESKLIILASGGPQAL------VNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE 222

Query: 442 GHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKR 501
              ++ L   L   ++++V+  L  L  + D     E           +  ++  LL   
Sbjct: 223 AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEG------MEGLLGTLVQ-LLGSD 275

Query: 502 TENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYR--TRQIAERALKHI 558
             N+   A  ++  +   +     +        ALV     A  R    + A  AL+H+
Sbjct: 276 DINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHL 334

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  115 bits (290), Expect = 1e-27
 Identities = 81/540 (15%), Positives = 181/540 (33%), Gaps = 66/540 (12%)

Query: 5   KSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAA--FLGD 62
             E+ + V KA   +  L K E +   +  + ++   + + ++   + + +      L +
Sbjct: 27  NDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHN 86

Query: 63  LALNSDVKVLVARTVG-SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLI-HAGILP 120
           L+ + +  + + ++ G   L+ ++ S        A+  L+ +   +  AK+ +  AG L 
Sbjct: 87  LSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQ 146

Query: 121 PLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLV-SEDIVHNLLH 179
            +V  L     N   ++   ++   L  +              +++ ++ +      L++
Sbjct: 147 KMVALL-----NKTNVKFLAITTDCLQILAYG---------NQESKLIILASGGPQALVN 192

Query: 180 LI-SNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASI 238
           ++ + T   +     +VL  L+       S   AI  +G   +L   +  P   L    +
Sbjct: 193 IMRTYTYEKLLWTTSRVLKVLSVCS----SNKPAIVEAGGMQALGLHLTDPSQRLVQNCL 248

Query: 239 ELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLT 298
             ++NLS        + + G +G L  L+     NV        A G+L+ L   +    
Sbjct: 249 WTLRNLSDA--ATKQEGMEGLLGTLVQLLGSDDINV-----VTCAAGILSNLTCNNYKNK 301

Query: 299 RQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCE 358
             +   G    +   V+++     R         E  +  L  +T    +   A      
Sbjct: 302 MMVCQVGGIEAL---VRTVLRAGDREDI-----TEPAICALRHLTSRHQEAEMAQNAVRL 353

Query: 359 HNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPE---LPP------------ 403
           H    + ++LL       +   +   + NL+L   N   L E   +P             
Sbjct: 354 HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDT 413

Query: 404 -------SGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTN 456
                        +     ++ V      LH     +     +   + +   + LL    
Sbjct: 414 QRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPI 473

Query: 457 EKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERI 516
           E +   +   L  +  D    ++    +       P+ + LL  R E +   A  V+ R+
Sbjct: 474 ENIQRVAAGVLCELAQD----KEAAEAIEAEGATAPLTE-LLHSRNEGVATYAAAVLFRM 528

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 79.8 bits (197), Expect = 5e-16
 Identities = 67/401 (16%), Positives = 130/401 (32%), Gaps = 40/401 (9%)

Query: 5   KSENLLTVEKAEKTLANL-EKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAF-LGD 62
              N+  +      L  L    + +   +  +G  Q L+  +     E  L   +  L  
Sbjct: 153 NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKV 212

Query: 63  LALNSDVKVLVARTVG-SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPP 121
           L++ S  K  +    G   L   +   + +  +  L  L  +S    + K     G+L  
Sbjct: 213 LSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA--ATKQEGMEGLLGT 270

Query: 122 LVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQT--LVSEDIVHNLLH 179
           LV+ L         + +   +A IL+N          +T         +     +  L+ 
Sbjct: 271 LVQLL-----GSDDINVVTCAAGILSN----------LTCNNYKNKMMVCQVGGIEALVR 315

Query: 180 LI--SNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQND-LRLA 236
            +  +     I    +  L  LTS         +A++       +V+ +  P +  L  A
Sbjct: 316 TVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA 375

Query: 237 SIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLG 296
           ++ LI+NL+    +      +GA+ +L  L+     +    +  +        +    + 
Sbjct: 376 TVGLIRNLALCPANHAPLREQGAIPRLVQLLV--RAHQDTQRRTSMGGTQQQFVEGVRM- 432

Query: 297 LTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLS--------VLARVTFVLSD 348
              + + EG  G +    + +            P    LL         V A V   L+ 
Sbjct: 433 ---EEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ 489

Query: 349 EPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLS 389
           + +A          A   ELL S   + V   +A  L  +S
Sbjct: 490 DKEAAEAIEAEGATAPLTELLHSRN-EGVATYAAAVLFRMS 529

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 72.1 bits (177), Expect = 2e-13
 Identities = 88/560 (15%), Positives = 180/560 (32%), Gaps = 94/560 (16%)

Query: 60  LGDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLI-HAGI 118
           + +L    D   L  R +   L  ++   +      A   ++Q+S  E S   ++    +
Sbjct: 2   VVNLINYQDDAELATRAI-PELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQM 60

Query: 119 LPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLV------SED 172
           +  +V+ +     N   +     +A  L N+ +      +I        LV       + 
Sbjct: 61  VSAIVRTM----QNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDS 116

Query: 173 IVHN----LLHLISNTGPT----IECKLLQVLVGLTSSPTTVLSVVSA------------ 212
           ++      L +L+ +             LQ +V L +        ++             
Sbjct: 117 VLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE 176

Query: 213 ----IKSSGATISLVQFVEAPQN-DLRLASIELIQNLSPHMGHELADALRGAVGQLGSLI 267
               I +SG   +LV  +       L   +  +++ LS    ++ A    G +  LG  +
Sbjct: 177 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL 236

Query: 268 RVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRF 327
              S+ +         +  L  L +     T+Q   EG  G +   V+ +   +      
Sbjct: 237 TDPSQRL-----VQNCLWTLRNLSD---AATKQEGMEGLLGTL---VQLLGSDDINVVTC 285

Query: 328 VTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALEN 387
                 G+LS L       ++  + + +C    + AL   +L++   + +   +  AL +
Sbjct: 286 AA----GILSNLTC-----NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH 336

Query: 388 LSLESKNLTK----------LPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETF 437
           L+   +              LP +        +    S  P+I     L R L       
Sbjct: 337 LTSRHQEAEMAQNAVRLHYGLPVV------VKLLHPPSHWPLIKATVGLIRNLALCPANH 390

Query: 438 CLLEGH-AVEKLIALLDHTNEKVV-EASLAALSTVIDDGVDIEQGV-------------- 481
             L    A+ +L+ LL   ++      S+        +GV +E+ V              
Sbjct: 391 APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV 450

Query: 482 ---MVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVD 538
              +V+     I   +  LL    EN+QR A  V+  + +  + A  +      +  L +
Sbjct: 451 HNRIVIRGLNTIPLFVQ-LLYSPIENIQRVAAGVLCELAQDKEAAEAI-EAEGATAPLTE 508

Query: 539 AFQHADYRTRQIAERALKHI 558
                +      A   L  +
Sbjct: 509 LLHSRNEGVATYAAAVLFRM 528

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 84.1 bits (207), Expect = 4e-17
 Identities = 74/546 (13%), Positives = 170/546 (31%), Gaps = 51/546 (9%)

Query: 33  AENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMKSGNMQA 92
           A  G LQ +L       +  +      L   +   D    +       L  +  S N   
Sbjct: 287 AREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHSKNDGI 346

Query: 93  REAALKALNQISSC---EPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANV 149
           R  AL  L ++ S    + + +       L         +        ++  +A  LA +
Sbjct: 347 RVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYL 406

Query: 150 VNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSV 209
                  + +        +  +  +H L+ L      +    ++   V L ++      +
Sbjct: 407 TLDAECKEKL--------IEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYE-KQEM 457

Query: 210 VSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRV 269
           +  +             E   +D+   +  +           LA+   G    L +L + 
Sbjct: 458 LPEMIELAKFAKQHIPEEHELDDVDFINKRITV---------LANE--GITTALCALAKT 506

Query: 270 ISENVGISKEQAA-AVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFV 328
            S N    +E  A  +  +  L E    L  +++ EG    +   ++    G  +G R  
Sbjct: 507 ESHNS---QELIARVLNAVCGLKE----LRGKVVQEGGVKAL---LRMALEGTEKGKRHA 556

Query: 329 TPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENL 388
           T  L  +         +  +   + +     ++    + LLQ +        S  AL NL
Sbjct: 557 TQALARIG--------ITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNL 608

Query: 389 SLESKNLTKLPELPPSGFCASIFPCFS--KQPVITGLCRLHRGLCSLKETFCLL--EGHA 444
           +  ++++ +   +      + I          +     +    L   ++   +       
Sbjct: 609 ASMNESVRQ--RIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDR 666

Query: 445 VEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTEN 504
           V+ L  L +  +E+   A   AL+ +    V   + ++          IL  L+   +  
Sbjct: 667 VKFLALLCEDEDEETATACAGALAIITSVSVKCCEKIL---AIASWLDILHTLIANPSPA 723

Query: 505 LQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHIDKIPNF 564
           +Q R + ++  ++   +   +   + ++   L    Q  D    +  E A + +     +
Sbjct: 724 VQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERY 783

Query: 565 SGIFPN 570
             I  +
Sbjct: 784 RIIERS 789

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 56.8 bits (136), Expect = 2e-08
 Identities = 55/387 (14%), Positives = 118/387 (30%), Gaps = 39/387 (10%)

Query: 5   KSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLA 64
           +  N   +     T  NL         + E   L     Q +                  
Sbjct: 431 RGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEE-------HELDDVDF 483

Query: 65  LNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVK 124
           +N  + VL    + + L  + K+ +  ++E   + LN +   +     ++  G +  L+ 
Sbjct: 484 INKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALL- 542

Query: 125 DLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNT 184
            +   G+     + K  +   LA +  + +   S           S D++  LL+L+   
Sbjct: 543 RMALEGTE----KGKRHATQALARIGITINPEVSF------SGQRSLDVIRPLLNLLQQ- 591

Query: 185 GPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNL 244
                 +  + L+ LT+  +   SV   I        +  ++      L  A+ + + NL
Sbjct: 592 -DCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNL 650

Query: 245 SPH-MGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLD 303
                  ++ +     V  L  L     E         A  G LA +    +    ++L 
Sbjct: 651 VMSEDVIKMFEGNNDRVKFLALLCEDEDEET-----ATACAGALAIITSVSVKCCEKILA 705

Query: 304 EGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAA 363
             ++  I   + +             P        +  +  +++   +      E ++  
Sbjct: 706 IASWLDILHTLIA------------NPSPAVQHRGIVIILNMINAGEEIAKKLFETDIME 753

Query: 364 LFIELLQSNGLDKVQMVSATALENLSL 390
           L   L Q    D        A + L+ 
Sbjct: 754 LLSGLGQLPD-DTRAKAREVATQCLAA 779

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 79.7 bits (196), Expect = 6e-16
 Identities = 78/486 (16%), Positives = 161/486 (33%), Gaps = 74/486 (15%)

Query: 5   KSENLLTVEKAEKTLANLEKCENN--VRQMAENGRLQPLLTQILEGPQETKLSLAAF-LG 61
            S NL +  +A +    L   E    +  +   G +   ++ + +         +A+ L 
Sbjct: 67  NSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALT 126

Query: 62  DLALNSD--VKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLI-HAGI 118
           ++A  +    K +V        I+++ S +    E A+ AL  I+    + + L+   G 
Sbjct: 127 NIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGA 186

Query: 119 LPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLL 178
           + PL+  L     + L           L+N+  + +    +           E I+  L+
Sbjct: 187 IDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPL--------DAVEQILPTLV 238

Query: 179 HLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASI 238
            L+ +  P +       +  LT  P      +  +   G    LV+ + A +  +   ++
Sbjct: 239 RLLHHNDPEVLADSCWAISYLTDGPN---ERIEMVVKKGVVPQLVKLLGATELPIVTPAL 295

Query: 239 ELIQNL---SPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDL 295
             I N+   +     ++ DA  GA+    SL+   +    I KE    +  +        
Sbjct: 296 RAIGNIVTGTDEQTQKVIDA--GALAVFPSLLT--NPKTNIQKEATWTMSNITA------ 345

Query: 296 GLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIAL 355
           G   Q+      GL+   V  +   + +  +     +    S             + I  
Sbjct: 346 GRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTS---------GGTVEQIVY 396

Query: 356 CCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFS 415
                +    + LL +    K+  V   A+ N+   ++ L +  +L              
Sbjct: 397 LVHCGIIEPLMNLLSAKD-TKIIQVILDAISNIFQAAEKLGETEKL-------------- 441

Query: 416 KQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGV 475
                               +  + E   ++K+ AL  H NE V +ASL  +        
Sbjct: 442 --------------------SIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEE 481

Query: 476 DIEQGV 481
           + +Q V
Sbjct: 482 EEDQNV 487

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 68.9 bits (168), Expect = 2e-12
 Identities = 65/497 (13%), Positives = 157/497 (31%), Gaps = 98/497 (19%)

Query: 81  LINIMKSGNMQAREAALKALNQISSCE--PSAKVLIHAGILPPLVKDLFTVGSNHLPMRL 138
           ++  + S N++++  A +A  ++ S E  P    +I AG++P  V  L           +
Sbjct: 62  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFL----GKTDCSPI 117

Query: 139 KEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVG 198
           +  SA  L N          I  G   QT                    ++   +   + 
Sbjct: 118 QFESAWALTN----------IASGTSEQTKAV-----------------VDGGAIPAFIS 150

Query: 199 LTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALR- 257
           L +SP                             +   ++  + N++   G    D +  
Sbjct: 151 LLASP--------------------------HAHISEQAVWALGNIAGD-GSAFRDLVIK 183

Query: 258 -GAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKS 316
            GA+  L +L+ V   +             L+ L             E     +   +  
Sbjct: 184 HGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHH 243

Query: 317 IQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDK 376
                           E L      ++++     + I +  +  +    ++LL +     
Sbjct: 244 -------------NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE-LP 289

Query: 377 VQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFS------KQPVITGLCRLHRGL 430
           +   +  A+ N+   +   T+  ++  +G  A      +      ++     +  +  G 
Sbjct: 290 IVTPALRAIGNIVTGTDEQTQ--KVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGR 347

Query: 431 CSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGI 490
               +   ++    V  L+ +L   + K  + +  A++     G  +EQ ++ L     I
Sbjct: 348 QDQIQ--QVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGG-TVEQ-IVYLVHCGII 403

Query: 491 KPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDA------FQHAD 544
           +P+++ LL  +   + +  +  +  I +    A ++     +S  + +            
Sbjct: 404 EPLMN-LLSAKDTKIIQVILDAISNIFQ---AAEKLGETEKLSIMIEECGGLDKIEALQR 459

Query: 545 YRTRQIAERALKHIDKI 561
           +    + + +L  I+K 
Sbjct: 460 HENESVYKASLNLIEKY 476

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 57.7 bits (139), Expect = 6e-09
 Identities = 60/416 (14%), Positives = 138/416 (33%), Gaps = 42/416 (10%)

Query: 4   SKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAF-LGD 62
            K++      ++   L N+    +   +   +G   P    +L  P       A + LG+
Sbjct: 110 GKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGN 169

Query: 63  LALNSDVKVLVARTVG--SCLINIMKSGNMQ------AREAALKALNQISSCEPSAKVLI 114
           +A +      +    G    L+ ++   ++        R       N   +  P+  +  
Sbjct: 170 IAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDA 229

Query: 115 HAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDN--QTLVSED 172
              ILP LV+ L     +H    +   S   ++           +T GP+   + +V + 
Sbjct: 230 VEQILPTLVRLL-----HHNDPEVLADSCWAISY----------LTDGPNERIEMVVKKG 274

Query: 173 IVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQND 232
           +V  L+ L+  T   I    L+ +  + +           +  +GA       +  P+ +
Sbjct: 275 VVPQLVKLLGATELPIVTPALRAIGNIVTGTD---EQTQKVIDAGALAVFPSLLTNPKTN 331

Query: 233 LRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPE 292
           ++  +   + N++     +    +         +  +   +    KE A A+        
Sbjct: 332 IQKEATWTMSNITAG-RQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGT 390

Query: 293 RDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDA 352
            +      ++  G    +      + L   + ++ +   L+ + ++      +   E  +
Sbjct: 391 VE--QIVYLVHCGIIEPL------MNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLS 442

Query: 353 IALCCEHNLAALFIELLQSNGLDKVQMVSATALENL--SLESKNLTKLPELPPSGF 406
           I +  E       IE LQ +  + V   S   +E      E ++   +PE    GF
Sbjct: 443 IMI--EECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPETTSEGF 496

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 50.0 bits (119), Expect = 1e-06
 Identities = 57/361 (15%), Positives = 120/361 (33%), Gaps = 39/361 (10%)

Query: 211 SAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALR--GAVGQLGSLIR 268
           +    + +   +V+ + +   + +L + +  + L         D +   G + +  S + 
Sbjct: 51  NQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLG 110

Query: 269 VISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFV 328
             ++   I   Q  +   L  +       T+ ++D GA     S + S     +  + + 
Sbjct: 111 -KTDCSPI---QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWA 166

Query: 329 TPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENL 388
                  L  +A       D      L  +H      + LL       +  ++   L NL
Sbjct: 167 -------LGNIA------GDGSAFRDLVIKHGAIDPLLALLAVP---DLSTLACGYLRNL 210

Query: 389 SLESKNLTK-LPELPPSGFCASIFPCFS----------KQPVITGLCRLHRGLCSLKETF 437
           +    NL +     PP      I P                    +  L  G     E  
Sbjct: 211 TWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEM- 269

Query: 438 CLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVL 497
            +++   V +L+ LL  T   +V  +L A+  ++      ++    + +A  +      L
Sbjct: 270 -VVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT---DEQTQKVIDAGALAVFPS-L 324

Query: 498 LEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKH 557
           L     N+Q+ A W +  I        +   +  +   LV     AD++T++ A  A+ +
Sbjct: 325 LTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITN 384

Query: 558 I 558
            
Sbjct: 385 Y 385

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 78.5 bits (193), Expect = 1e-15
 Identities = 62/473 (13%), Positives = 147/473 (31%), Gaps = 70/473 (14%)

Query: 5   KSENLLTVEKAEKTLANLEKCENN--VRQMAENGRLQPLLTQILEGPQETKLSLAAF-LG 61
            S+++     A      +   E+   +  + + G +  L+  + E   E     AA+ L 
Sbjct: 97  NSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALT 156

Query: 62  DLALNSD--VKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLI-HAGI 118
           ++A  +    KV+V        I ++ +G+++ +E A+ AL  ++      +  +     
Sbjct: 157 NIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNA 216

Query: 119 LPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLL 178
           + P++        N     L   +   L+N+                   V    +  L 
Sbjct: 217 MEPILGLF-----NSNKPSLIRTATWTLSNLCRGKKPQPDW--------SVVSQALPTLA 263

Query: 179 HLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASI 238
            LI +            +  L+  P      + A+        LV+ +      ++  ++
Sbjct: 264 KLIYSMDTETLVDACWAISYLSDGPQ---EAIQAVIDVRIPKRLVELLSHESTLVQTPAL 320

Query: 239 ELIQNLSPHMGHELADALR--GAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLG 296
             + N+           +   G +  L  L+   S    I KE    +  +         
Sbjct: 321 RAVGNIVTG-NDLQTQVVINAGVLPALRLLLS--SPKENIKKEACWTISNITAGNTE--- 374

Query: 297 LTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALC 356
             + ++D      +   ++  +    + + +           ++  +      PD I   
Sbjct: 375 QIQAVIDANLIPPLVKLLEVAEYKTKKEACWA----------ISNASSGGLQRPDIIRYL 424

Query: 357 CEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSK 416
                     +LL+    +++  V+  ALEN+    +   +                   
Sbjct: 425 VSQGCIKPLCDLLEIAD-NRIIEVTLDALENILKMGEADKEA------------------ 465

Query: 417 QPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALST 469
                      RGL   +    + +   +EK+     + N+K+ E +   + T
Sbjct: 466 -----------RGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIET 507

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 74.7 bits (183), Expect = 3e-14
 Identities = 74/461 (16%), Positives = 146/461 (31%), Gaps = 84/461 (18%)

Query: 81  LINIMKSGNMQAREAALKALNQISSCE--PSAKVLIHAGILPPLVKDLFTVGSNHLPMRL 138
           +   + S +MQ + +A     QI S E  P   V+I AG++P LV+ +      + P  L
Sbjct: 92  MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM----RENQPEML 147

Query: 139 KEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVG 198
           +  +A  L N          I  G   QT                               
Sbjct: 148 QLEAAWALTN----------IASGTSAQT------------------------------- 166

Query: 199 LTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRG 258
                         +  + A    +Q +     +++  +I  + N++     +  D +  
Sbjct: 167 ------------KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGD-STDYRDYVLQ 213

Query: 259 AVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQ 318
               +  ++ + + N         A   L+ L           +   A   +   + S  
Sbjct: 214 C-NAMEPILGLFNSN--KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYS-- 268

Query: 319 LGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQ 378
                         E L+     ++++     +AI    +  +    +ELL       VQ
Sbjct: 269 -----------MDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSH-ESTLVQ 316

Query: 379 MVSATALENLSLESKNLTKL----PELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLK 434
             +  A+ N+   +   T++      LP      S      K+     +  +  G     
Sbjct: 317 TPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQI 376

Query: 435 ETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPIL 494
           +   +++ + +  L+ LL+    K  + +  A+S     G+     +  L     IKP+ 
Sbjct: 377 Q--AVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLC 434

Query: 495 DVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTA 535
           D LLE     +    +  +E IL+  +   E  G      A
Sbjct: 435 D-LLEIADNRIIEVTLDALENILKMGEADKEARGLNINENA 474

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 63.5 bits (154), Expect = 9e-11
 Identities = 60/348 (17%), Positives = 115/348 (33%), Gaps = 38/348 (10%)

Query: 221 SLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQ 280
            + Q + +     +L++    + +         D +  A G +  L+  + EN      Q
Sbjct: 91  QMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQA-GVVPRLVEFMRENQPEML-Q 148

Query: 281 AAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLA 340
             A   L  +       T+ ++D  A  L    + +               +E     + 
Sbjct: 149 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT-------------GSVEVKEQAIW 195

Query: 341 RVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPE 400
            +  V  D  D      + N     + L  SN    +   +   L NL    K       
Sbjct: 196 ALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKP-SLIRTATWTLSNLCRGKKPQ----- 249

Query: 401 LPPSGFCASIFPCFSK----------QPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIA 450
            P     +   P  +K                +  L  G     +     +    ++L+ 
Sbjct: 250 -PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVI--DVRIPKRLVE 306

Query: 451 LLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAV 510
           LL H +  V   +L A+  ++       Q V+      G+ P L +LL    EN+++ A 
Sbjct: 307 LLSHESTLVQTPALRAVGNIVTGNDLQTQVVI----NAGVLPALRLLLSSPKENIKKEAC 362

Query: 511 WVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHI 558
           W +  I   +    +   D N+   LV   + A+Y+T++ A  A+ + 
Sbjct: 363 WTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNA 410

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 75.3 bits (184), Expect = 3e-14
 Identities = 92/628 (14%), Positives = 186/628 (29%), Gaps = 190/628 (30%)

Query: 1   MTSSKSENLL----TVEKAEKTLANLEKCENNVRQMAENGRLQP----LLTQILEGPQET 52
           ++  + ++++     V    +    L   +  + Q      L+     L++ I    ++ 
Sbjct: 46  LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP 105

Query: 53  KLSLAAFLGDL-ALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQ-ISSCEPSA 110
            +    ++     L +D +V     V              +R      L Q +    P+ 
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNV--------------SRLQPYLKLRQALLELRPAK 151

Query: 111 KVLIH--AGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDS--------IT 160
            VLI    G            G        K    T +A  V   +            + 
Sbjct: 152 NVLIDGVLGS-----------G--------K----TWVALDVCLSYKVQCKMDFKIFWLN 188

Query: 161 VGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATI 220
           +   N      +++  LL+        I+          ++    + S+ + ++      
Sbjct: 189 LKNCNSPETVLEMLQKLLY-------QIDPNWTSRSDHSSNIKLRIHSIQAELRR----- 236

Query: 221 SLVQFVEAP-QNDLRLASIELI----QNLSPHMGHELADALRGAVGQLGSLIRVISENVG 275
                   P +N L      L+    QN       +  +A       L   I + +    
Sbjct: 237 ---LLKSKPYENCL------LVLLNVQNA------KAWNAF-----NLSCKILLTTRFKQ 276

Query: 276 ISKEQAAAVGLLAELPERDLGLT-RQMLDEGAFGLIFSRVKSIQLGE-----TRGSRFVT 329
           ++   +AA      L    + LT  ++        +  +    +  +        +    
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKS------LLLKYLDCRPQDLPREVLTTN---- 326

Query: 330 PFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLS 389
           P     LS++A     + D                  +  +    DK+  +  ++L  L 
Sbjct: 327 PR---RLSIIAE---SIRDGLAT-------------WDNWKHVNCDKLTTIIESSLNVLE 367

Query: 390 -LESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRL---------HRGLCSLKETFCL 439
             E + +     L       S+FP  +  P I  L  +            +  L   + L
Sbjct: 368 PAEYRKMFD--RL-------SVFPPSAHIPTIL-LSLIWFDVIKSDVMVVVNKL-HKYSL 416

Query: 440 LEGHAVEKLIALLD-HTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDV-- 496
           +E    E  I++   +   KV   +  AL   I D  +I +          I P LD   
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT---FDSDDLIPPYLDQYF 473

Query: 497 -------LLEKRTENLQR----RAVWV----VERILRTDDIAYEVSGDPNVSTALVDAFQ 541
                  L  K  E+ +R    R V++    +E+ +R D  A+  SG       +++  Q
Sbjct: 474 YSHIGHHL--KNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGS------ILNTLQ 525

Query: 542 HAD-YRTRQIAERALKHI-DKIPNFSGI 567
               Y+          +I D  P +  +
Sbjct: 526 QLKFYK---------PYICDNDPKYERL 544

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 1e-05
 Identities = 67/437 (15%), Positives = 130/437 (29%), Gaps = 121/437 (27%)

Query: 7   ENLLTVEKAEKTLANLEKCENNVRQMAENG--RLQPLLTQ--------ILEGPQETKLSL 56
           + LL   + +    +     +N++    +    L+ LL          +L   Q  K   
Sbjct: 203 QKLLY--QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA-W 259

Query: 57  AAFLGDLALNSDVKVLVARTVGSCLINIMKSGNM---------------QAREAALKALN 101
            AF  +L      K+L+  T    + + + +                  + +   LK L+
Sbjct: 260 NAF--NL----SCKILLT-TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312

Query: 102 QISSCEPSAKVLIH---AGILPPLVKDLFTVGSNHLPMRLKEVSATILA--NVVNSG--- 153
                 P   +  +     I+   ++D      N   +   +++  I +  NV+      
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372

Query: 154 HDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAI 213
             FD ++V P +         H            I   LL ++       + V+ VV+ +
Sbjct: 373 KMFDRLSVFPPS--------AH------------IPTILLSLIWF-DVIKSDVMVVVNKL 411

Query: 214 KSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISEN 273
                  SLV+     Q      SI             +   L+  +    +L R I ++
Sbjct: 412 HKY----SLVE----KQPKESTISI-----------PSIYLELKVKLENEYALHRSIVDH 452

Query: 274 VGISKE-QAAAVGLL----------------AELPERDLGLTRQMLDEGAFGLIFSRVKS 316
             I K   +  +                    E PER        LD   F   F   K 
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD---FR--FLEQKI 507

Query: 317 IQLGETRGSRFVTPFLEGLLSVLARV----TFVLSDEPDAIALCC--EHNLAALFIELLQ 370
                   +         +L+ L ++     ++  ++P    L       L  +   L+ 
Sbjct: 508 RHDSTAWNAS------GSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLIC 561

Query: 371 SNGLDKVQMVSATALEN 387
           S   D +++    AL  
Sbjct: 562 SKYTDLLRI----ALMA 574

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 3e-04
 Identities = 21/141 (14%), Positives = 48/141 (34%), Gaps = 28/141 (19%)

Query: 443 HAVEKLIALLDHTNEKVVEASLAALSTVID--DGVDIEQGVMVLCEAQGI--KP------ 492
           H ++       +  + ++     A     D  D  D+ + ++   E   I          
Sbjct: 5   HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64

Query: 493 --ILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQI 550
             +   LL K+ E +Q+     VE +LR +   Y+          L+   +    +   +
Sbjct: 65  LRLFWTLLSKQEEMVQK----FVEEVLRIN---YKF---------LMSPIKTEQRQPSMM 108

Query: 551 AERALKHIDKIPNFSGIFPNM 571
               ++  D++ N + +F   
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKY 129

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 72.2 bits (177), Expect = 1e-13
 Identities = 70/475 (14%), Positives = 149/475 (31%), Gaps = 59/475 (12%)

Query: 18  TLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSD----VKVLV 73
            +   E   NN+           ++  I     E +LS       L          +V+ 
Sbjct: 2   AMGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVIS 61

Query: 74  ARTVGSCLINIMKSG-NMQAREAALKALNQISSCEPS-AKVLIHAGILPPLVKDLFTVGS 131
              V +  +  +K   N   +  +   L  I+S      +++I AG +P  ++ L     
Sbjct: 62  TPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELL----- 116

Query: 132 NHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGP-TIEC 190
           +     ++E +   L N+                  ++  +I+  LL L S     T+  
Sbjct: 117 SSEFEDVQEQAVWALGNIAGDSTMC--------RDYVLDCNILPPLLQLFSKQNRLTMTR 168

Query: 191 KLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGH 250
             +  L  L    +         K S     L   +     D+   +   +  LS    +
Sbjct: 169 NAVWALSNLCRGKS---PPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDG-PN 224

Query: 251 ELADALR--GAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFG 308
           +   A+   G   +L  L+      V      + A+  +  +   D   T+ +L+  A  
Sbjct: 225 DKIQAVIDAGVCRRLVELLMHNDYKV-----VSPALRAVGNIVTGDDIQTQVILNCSALQ 279

Query: 309 LIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIEL 368
            +   + S           +       +S +       +     I    + N+    I +
Sbjct: 280 SLLHLLSS-------PKESIKKEACWTISNIT------AGNRAQIQTVIDANIFPALISI 326

Query: 369 LQSNGLDKVQMVSATALENLSLES-----KNLTKLPELPPSGFCASIFPCFSKQPVITGL 423
           LQ     + +  +A A+ N +        K L +L  + P     ++      Q  + GL
Sbjct: 327 LQ-TAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGL 385

Query: 424 CRLHRGLCSLKET---------FCLLEGHAVEKLIALLDHTNEKVVEASLAALST 469
             + R      +            + E + ++K+  L  H N+++ + +   +  
Sbjct: 386 ENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEH 440

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 65.7 bits (160), Expect = 2e-11
 Identities = 56/462 (12%), Positives = 142/462 (30%), Gaps = 77/462 (16%)

Query: 99  ALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDS 158
           A+    +   + ++     I   +++ +F   S       +  +      +++   +   
Sbjct: 2   AMGFHEAQINNMEMAPGGVITSDMIEMIF---SKSP--EQQLSATQKFRKLLSKEPNP-- 54

Query: 159 ITVGPDNQTLVSEDIVHNLLHLISNTG-PTIECKLLQVLVGLTSSPTTVLSVVSAIKSSG 217
               P ++ + +  +V   +  +      T++ +   VL  + S  +        +  +G
Sbjct: 55  ----PIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNS---LQTRIVIQAG 107

Query: 218 ATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGIS 277
           A    ++ + +   D++  ++  + N++        D +      L  L+++ S+   ++
Sbjct: 108 AVPIFIELLSSEFEDVQEQAVWALGNIAGD-STMCRDYVLDC-NILPPLLQLFSKQNRLT 165

Query: 278 KEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLS 337
                AV  L+ L                  ++      + + +T          + L  
Sbjct: 166 -MTRNAVWALSNLCRGKSPPPEFAKVSPCLNVL---SWLLFVSDT----------DVLAD 211

Query: 338 VLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTK 397
               ++++     D I    +  +    +ELL  N    V   +  A+ N+       T+
Sbjct: 212 ACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYK-VVSPALRAVGNIVTGDDIQTQ 270

Query: 398 LPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNE 457
           +                                        +L   A++ L+ LL    E
Sbjct: 271 V----------------------------------------ILNCSALQSLLHLLSSPKE 290

Query: 458 KVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERIL 517
            + + +   +S +        Q V+       I P L  +L+      ++ A W +    
Sbjct: 291 SIKKEACWTISNITAGNRAQIQTVI----DANIFPALISILQTAEFRTRKEAAWAITNAT 346

Query: 518 RTDDIAYEVS-GDPNVSTALVDAFQHADYRTRQIAERALKHI 558
                       +      L D     D +  Q+A   L++I
Sbjct: 347 SGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENI 388

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 59.1 bits (143), Expect = 2e-09
 Identities = 42/270 (15%), Positives = 98/270 (36%), Gaps = 24/270 (8%)

Query: 4   SKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILE-GPQETKLSLAAFLGD 62
           SK   L     A   L+NL + ++   + A+      +L+ +L     +        L  
Sbjct: 159 SKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSY 218

Query: 63  LALNSDVKVLVARTVGSC--LINIMKSGNMQAREAALKALNQISSCEPS-AKVLIHAGIL 119
           L+   + K+      G C  L+ ++   + +    AL+A+  I + +    +V+++   L
Sbjct: 219 LSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSAL 278

Query: 120 PPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQ--TLVSEDIVHNL 177
             L+  L     +     +K+ +   ++N          IT G   Q  T++  +I   L
Sbjct: 279 QSLLHLL-----SSPKESIKKEACWTISN----------ITAGNRAQIQTVIDANIFPAL 323

Query: 178 LHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLAS 237
           + ++         +    +   TS  +     +  +   G    L   +    + +   +
Sbjct: 324 ISILQTAEFRTRKEAAWAITNATSGGSAEQ--IKYLVELGCIKPLCDLLTVMDSKIVQVA 381

Query: 238 IELIQNLSPHMGHELADALRGAVGQLGSLI 267
           +  ++N+   +G + A      +    +LI
Sbjct: 382 LNGLENIL-RLGEQEAKRNGTGINPYCALI 410

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 53.7 bits (129), Expect = 9e-08
 Identities = 58/384 (15%), Positives = 129/384 (33%), Gaps = 46/384 (11%)

Query: 4   SKSENLLTVEKAEKTLANL-EKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAF-LG 61
            + EN     ++   L N+        R + + G +   + ++L    E     A + LG
Sbjct: 74  KRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFI-ELLSSEFEDVQEQAVWALG 132

Query: 62  DLALNSDVKVLVARTVG--SCLINIMKSGN-MQAREAALKALNQISSC-EPSAKVLIHAG 117
           ++A +S +             L+ +    N +     A+ AL+ +     P  +    + 
Sbjct: 133 NIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSP 192

Query: 118 ILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNL 177
            L  L   L           +   +   L+ + +  +D          Q ++   +   L
Sbjct: 193 CLNVLSWLL-----FVSDTDVLADACWALSYLSDGPNDKI--------QAVIDAGVCRRL 239

Query: 178 LHLISNTGPTIECKLLQVLVGL-TSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLA 236
           + L+ +    +    L+ +  + T        +++      A  SL+  + +P+  ++  
Sbjct: 240 VELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNC----SALQSLLHLLSSPKESIKKE 295

Query: 237 SIELIQNLSPHMGHELADAL--RGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERD 294
           +   I N++          +        L S+++  +      KE A A+         +
Sbjct: 296 ACWTISNITAG-NRAQIQTVIDANIFPALISILQ--TAEFRTRKEAAWAITNATSGGSAE 352

Query: 295 LGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIA 354
               + +++ G    +        L     S+ V   L GL ++L         E +A  
Sbjct: 353 --QIKYLVELGCIKPL------CDLLTVMDSKIVQVALNGLENILR------LGEQEAKR 398

Query: 355 LCCEHNLAALFIELLQSNGLDKVQ 378
                N     IE  ++ GLDK++
Sbjct: 399 NGTGINPYCALIE--EAYGLDKIE 420

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 48.0 bits (114), Expect = 6e-06
 Identities = 30/192 (15%), Positives = 69/192 (35%), Gaps = 13/192 (6%)

Query: 5   KSENLLTVEKAEKTLANLEKCENNVRQ-MAENGRLQPLLTQILEGPQETKLSLAAFLGDL 63
              +   V  A + + N+   ++   Q +     LQ LL  +    +  K      + ++
Sbjct: 244 MHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNI 303

Query: 64  ALNSD--VKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSC--EPSAKVLIHAGIL 119
              +   ++ ++   +   LI+I+++   + R+ A  A+   +S       K L+  G +
Sbjct: 304 TAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCI 363

Query: 120 PPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDN---QTLVSEDIVHN 176
            PL   L       +  ++ +V+   L N++  G           N     +     +  
Sbjct: 364 KPLCDLL-----TVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDK 418

Query: 177 LLHLISNTGPTI 188
           +  L S+    I
Sbjct: 419 IEFLQSHENQEI 430

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 60.8 bits (148), Expect = 1e-10
 Identities = 54/250 (21%), Positives = 101/250 (40%), Gaps = 26/250 (10%)

Query: 5   KSENLLTVEKAEKTLANLEKCEN-NVRQMAENGRLQPLLTQILEGPQETKLSLAAF-LGD 62
            S+++     A +  + +    N  ++ + + G L P L Q+L  P E  L  A + L +
Sbjct: 22  NSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSN 80

Query: 63  LALNSDVKVLVARTVG--SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLI-HAGIL 119
           +A   + ++      G    L+ ++ S N Q  + AL AL+ I+S        +  AG L
Sbjct: 81  IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGAL 140

Query: 120 PPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQ--TLVSEDIVHNL 177
           P LV  L +  +     ++ + +   L+N          I  G + Q   ++    +  L
Sbjct: 141 PALV-QLLSSPN----EQILQEALWALSN----------IASGGNEQIQAVIDAGALPAL 185

Query: 178 LHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLAS 237
           + L+S+    I  + L  L  + S          A+K +GA   L Q        ++  +
Sbjct: 186 VQLLSSPNEQILQEALWALSNIASGGN---EQKQAVKEAGALEKLEQLQSHENEKIQKEA 242

Query: 238 IELIQNLSPH 247
            E ++ L  H
Sbjct: 243 QEALEKLQSH 252

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 39/214 (18%), Positives = 77/214 (35%), Gaps = 45/214 (21%)

Query: 345 VLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPS 404
           +LSD  + I    +       ++LL S   +++   +  AL N++       +       
Sbjct: 39  ILSDGNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQIQA------ 91

Query: 405 GFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASL 464
                                             +++  A+  L+ LL   NE++++ +L
Sbjct: 92  ----------------------------------VIDAGALPALVQLLSSPNEQILQEAL 117

Query: 465 AALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAY 524
            ALS +   G +  Q V+   +A  +  ++  LL    E + + A+W +  I    +   
Sbjct: 118 WALSNIASGGNEQIQAVI---DAGALPALVQ-LLSSPNEQILQEALWALSNIASGGNEQI 173

Query: 525 EVSGDPNVSTALVDAFQHADYRTRQIAERALKHI 558
           +   D     ALV      + +  Q A  AL +I
Sbjct: 174 QAVIDAGALPALVQLLSSPNEQILQEALWALSNI 207

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 47/316 (14%), Positives = 103/316 (32%), Gaps = 82/316 (25%)

Query: 211 SAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALR--GAVGQLGSLIR 268
                      + Q + +     +L++      +    G+E   A+   GA+  L  L+ 
Sbjct: 6   HHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSD-GNEQIQAVIDAGALPALVQLLS 64

Query: 269 VISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFV 328
             +E +        A+  L+ +        + ++D GA                     +
Sbjct: 65  SPNEQI-----LQEALWALSNIASGGNEQIQAVIDAGA---------------------L 98

Query: 329 TPFLEGLLS----VLARVTFVLS----DEPDAIALCCEHNLAALFIELLQSNGLDKVQMV 380
              ++ L S    +L    + LS       + I    +       ++LL S   +++   
Sbjct: 99  PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQE 157

Query: 381 SATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLL 440
           +  AL N++       +                                         ++
Sbjct: 158 ALWALSNIASGGNEQIQA----------------------------------------VI 177

Query: 441 EGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEK 500
           +  A+  L+ LL   NE++++ +L ALS +   G + +Q V    EA  ++ +   L   
Sbjct: 178 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAV---KEAGALEKLEQ-LQSH 233

Query: 501 RTENLQRRAVWVVERI 516
             E +Q+ A   +E++
Sbjct: 234 ENEKIQKEAQEALEKL 249

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 61.0 bits (148), Expect = 3e-10
 Identities = 55/311 (17%), Positives = 101/311 (32%), Gaps = 44/311 (14%)

Query: 5   KSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSL-------- 56
            +     +  A   L  L   E +   M E G LQ +  ++L+   E             
Sbjct: 42  PAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIA-ELLQVDCEMYGLTNDHYSITL 100

Query: 57  ----AAFLGDLAL-NSDVKVLVARTVG--SCLINIMKSGNMQAREAALKALNQISS--CE 107
                  L +L   +   K  +    G    L+  +KS +   ++     L  +S     
Sbjct: 101 RRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADV 160

Query: 108 PSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQT 167
            S K L   G +  L++    V          +   + L N+              +N+ 
Sbjct: 161 NSKKTLREVGSVKALMECALEVKK----ESTLKSVLSALWNLSAH---------CTENKA 207

Query: 168 LVSED------IVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATIS 221
            +         +V  L +        I      +L  ++S   T       ++ +    +
Sbjct: 208 DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQT 267

Query: 222 LVQFVEAPQNDLRLASIELIQNLS---PHMGHELADALRGAVGQLGSLIRVISENVGISK 278
           L+Q +++    +   +   + NLS   P     L D   GAV  L +LI   S++  I+ 
Sbjct: 268 LLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDM--GAVSMLKNLIH--SKHKMIAM 323

Query: 279 EQAAAVGLLAE 289
             AAA+  L  
Sbjct: 324 GSAAALRNLMA 334

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 50.6 bits (121), Expect = 7e-07
 Identities = 39/224 (17%), Positives = 78/224 (34%), Gaps = 15/224 (6%)

Query: 346 LSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSG 405
             D  +   LC         +  L+S   D +Q V A+ L NLS  +   +K   L   G
Sbjct: 113 FGDVANKATLCSMKGCMRALVAQLKSESED-LQQVIASVLRNLSWRADVNSKK-TLREVG 170

Query: 406 FCASIFPCF---SKQPVITGLCRLHRGLCSL----KETFCLLEGHAVEKLIALLDHTNE- 457
              ++  C     K+  +  +      L +     K   C ++G A+  L+  L + ++ 
Sbjct: 171 SVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDG-ALAFLVGTLTYRSQT 229

Query: 458 ---KVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVE 514
               ++E+    L  V       E    +L E   ++ +L   L+  +  +   A   + 
Sbjct: 230 NTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQ-HLKSHSLTIVSNACGTLW 288

Query: 515 RILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHI 558
            +   +    E   D    + L +            +  AL+++
Sbjct: 289 NLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNL 332

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 49.5 bits (118), Expect = 2e-06
 Identities = 57/433 (13%), Positives = 120/433 (27%), Gaps = 109/433 (25%)

Query: 66  NSDVKVLVARTVG-SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVK 124
            +  +   A   G     N M +        A+  L ++S  E     +   G L  + +
Sbjct: 21  ETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAE 80

Query: 125 ------DLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLL 178
                 +++ + ++H  + L+  +   L N          +T G             N  
Sbjct: 81  LLQVDCEMYGLTNDHYSITLRRYAGMALTN----------LTFGDVA----------NKA 120

Query: 179 HLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASI 238
            L S  G       ++ LV    S +  L  V A     + +  + +     +   L  +
Sbjct: 121 TLCSMKG------CMRALVAQLKSESEDLQQVIA-----SVLRNLSWRADVNSKKTLREV 169

Query: 239 ELIQNLSPHMGH-ELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGL 297
             ++ L       +    L+  +  L +L    +EN         A+  L          
Sbjct: 170 GSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQT 229

Query: 298 TRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCC 357
               + E   G                             +L  V+ +++   D   +  
Sbjct: 230 NTLAIIESGGG-----------------------------ILRNVSSLIATNEDHRQILR 260

Query: 358 EHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQ 417
           E+N     ++ L+S     +   +   L NLS  +    +                    
Sbjct: 261 ENNCLQTLLQHLKS-HSLTIVSNACGTLWNLSARNPKDQEA------------------- 300

Query: 418 PVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDI 477
                                L +  AV  L  L+   ++ +   S AAL  ++ +    
Sbjct: 301 ---------------------LWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK 339

Query: 478 EQGVMVLCEAQGI 490
            +   ++     +
Sbjct: 340 YKDANIMSPGSSL 352

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 61.5 bits (148), Expect = 4e-10
 Identities = 54/423 (12%), Positives = 131/423 (30%), Gaps = 43/423 (10%)

Query: 5   KSENLLTVEKAEKTLANL-EKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDL 63
                     A   L +L  + +     + +   +  L+  +    +E  L     L ++
Sbjct: 58  GFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNI 117

Query: 64  AL--NSDVKVLVARTVG-SCLINIMKSGN-MQAREAALKALNQISSCEPSAKVLIHAGIL 119
           +   + D K+ +    G   L+ +++    M   E     L  +SS   S K+ I    L
Sbjct: 118 SFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVDHAL 176

Query: 120 PPLVKDLFTVGS------NHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDI 173
             L  ++    S      N           ++L N      +  S       +    + +
Sbjct: 177 HALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGL 236

Query: 174 VHNLLHLISNTGPTIEC------KLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVE 227
           V  L+ ++       +         + +L  L+      +      + +   ++      
Sbjct: 237 VDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTS 296

Query: 228 APQNDLRLASIELIQNLSPHMGH----ELADALRGAVGQLGSLIRVISENVGISKEQAAA 283
             +    L   E+++     +       + +A  GA+  L +        +  +  Q  A
Sbjct: 297 PARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKA 356

Query: 284 VGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVT 343
           +  +A+L    L    + + + A G + +     +  E  G   +   ++ L       +
Sbjct: 357 LSAIADL----LTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSS 412

Query: 344 FVLSDEPDAIALCCEHNLAA----------------LFIELLQS-NGLDKVQMVSATALE 386
           +  S++     L   + + A                  + + +S N  +K    +A  L+
Sbjct: 413 WNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQ 472

Query: 387 NLS 389
            + 
Sbjct: 473 TIW 475

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 58.8 bits (141), Expect = 3e-09
 Identities = 71/471 (15%), Positives = 155/471 (32%), Gaps = 41/471 (8%)

Query: 15  AEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLAL-NSDVKVLV 73
           +  +L +L K         +   L  ++  +       K + AA+L  L   N  VK  V
Sbjct: 28  SLASLDSLRKGGPPPPNWRQPE-LPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDV 86

Query: 74  ARTVG-SCLINIMKSGNMQAREAALKALNQISSC--EPSAKVLIHAGILPPLVKDLFTVG 130
            +  G   L+ ++     +    A  AL  IS    + +   + +   +P LV+ L    
Sbjct: 87  RKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLL---- 142

Query: 131 SNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIEC 190
                M L EV    L N          ++     +  + +  +H L   +       E 
Sbjct: 143 RKARDMDLTEVITGTLWN----------LSSHDSIKMEIVDHALHALTDEVIIPHSGWER 192

Query: 191 KLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQND-LRLASIELIQNLSPHMG 249
           +  +          +VL+  +    + ++       +  + D L  A I ++Q       
Sbjct: 193 EPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKD 252

Query: 250 HELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGL 309
            + +  +   V  L +L   +   +  ++    A   +A           ++L +    +
Sbjct: 253 SD-SKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQ--PEV 309

Query: 310 IFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAI-ALCCEHNLAALFIEL 368
           +   +  ++  +T          E     +  +          I +   +    +   +L
Sbjct: 310 VRIYISLLKESKTPAIL------EASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL 363

Query: 369 LQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHR 428
           L +   ++V   ++ AL NL+++++N   + +        ++               +  
Sbjct: 364 LTN-EHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVIS 422

Query: 429 GLCSLKETFC--------LLEGHAVEKLIALLDHTN--EKVVEASLAALST 469
            L ++ E           L E   +EKL+ +    N  EK V A+   L T
Sbjct: 423 ILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQT 473

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 48.0 bits (113), Expect = 6e-06
 Identities = 22/159 (13%), Positives = 53/159 (33%), Gaps = 17/159 (10%)

Query: 4   SKSENLLTVEKAEKTLANL-----EKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAA 58
            +S+    +E +   + NL              + +   L  +   +    +    + + 
Sbjct: 318 KESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASG 377

Query: 59  FLGDLALNSDVKVLVARTVGSCLINIMKSGNMQARE--------AALKALNQISSCEPS- 109
            L +LA+++  K L+ +     L+  +  G   +          + L  +N++ +     
Sbjct: 378 ALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEA 437

Query: 110 AKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILAN 148
           AK L     +  LV       S +   +    +A +L  
Sbjct: 438 AKKLRETQGIEKLVLIN---KSGNRSEKEVRAAALVLQT 473

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 42.2 bits (98), Expect = 4e-04
 Identities = 51/388 (13%), Positives = 118/388 (30%), Gaps = 20/388 (5%)

Query: 139 KEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVG 198
           +   A +  +   S    DS+  G        +  +  ++ ++      ++      L  
Sbjct: 15  QYYWAPLAQHERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQH 74

Query: 199 LTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALR- 257
           L         V + ++       LV  ++ P+ ++ L +   ++N+S     +   A++ 
Sbjct: 75  LCYRND---KVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKN 131

Query: 258 -GAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKS 316
              V  L  L+R  + ++ +++     +  L+      + +    L      +I      
Sbjct: 132 CDGVPALVRLLR-KARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGW 190

Query: 317 IQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHN-LAALFIELLQSNGLD 375
            +            +   L +    +  V S+  +A     E + L    I ++Q+    
Sbjct: 191 EREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQ 250

Query: 376 KVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKE 435
             +   +  +EN     +NL+                  +              L     
Sbjct: 251 --KDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYEL----- 303

Query: 436 TFCLLEGHAVEKLIALLDH-TNEKVVEASLAALST-VIDDGVDIEQGVMVLCEAQGIKPI 493
              L +   V   I+LL       ++EAS  A+                 L + + +  I
Sbjct: 304 ---LFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAI 360

Query: 494 LDVLLEKRTENLQRRAVWVVERILRTDD 521
            D LL    E + + A   +  +     
Sbjct: 361 AD-LLTNEHERVVKAASGALRNLAVDAR 387

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 58.0 bits (141), Expect = 7e-10
 Identities = 39/202 (19%), Positives = 81/202 (40%), Gaps = 19/202 (9%)

Query: 5   KSENLLTVEKAEKTLANL-EKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDL 63
            S +   ++ A + L+ +       ++ + + G L  L+  +    ++        L ++
Sbjct: 22  NSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 81

Query: 64  ALNSDVKVLVARTVG--SCLINIMKSGNMQAREAALKALNQISSCEPSAKV-LIHAGILP 120
           A   + ++      G    L+ ++ S N Q  + AL AL+ I+S        +I AG LP
Sbjct: 82  ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALP 141

Query: 121 PLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSE-DIVHNLLH 179
            LV  L +  +     ++ + +   L+N+          + G + +  V E   +  L  
Sbjct: 142 ALV-QLLSSPNE----QILQEALWALSNIA---------SGGNEQKQAVKEAGALEKLEQ 187

Query: 180 LISNTGPTIECKLLQVLVGLTS 201
           L S+    I+ +  + L  L S
Sbjct: 188 LQSHENEKIQKEAQEALEKLQS 209

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 46/227 (20%), Positives = 87/227 (38%), Gaps = 23/227 (10%)

Query: 26  ENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSC--LIN 83
             +         L  ++ Q+    Q+   S    L  +A   + ++      G+   L+ 
Sbjct: 2   RGSHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQ 61

Query: 84  IMKSGNMQAREAALKALNQISSCEPS-AKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVS 142
           ++ S N Q  + AL AL+ I+S      + +I AG LP LV+ L     +    ++ + +
Sbjct: 62  LLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-----SSPNEQILQEA 116

Query: 143 ATILANVVNSGHDFDSITVGPDNQ--TLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLT 200
              L+N          I  G + Q   ++    +  L+ L+S+    I  + L  L  + 
Sbjct: 117 LWALSN----------IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 166

Query: 201 SSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPH 247
           S          A+K +GA   L Q        ++  + E ++ L  H
Sbjct: 167 SGGN---EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 210

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 4/121 (3%)

Query: 438 CLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVL 497
            +++  A+  L+ LL   NE++++ +L ALS +   G +  Q V+   +A  +  ++  L
Sbjct: 49  AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI---DAGALPALVQ-L 104

Query: 498 LEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKH 557
           L    E + + A+W +  I    +   +   D     ALV      + +  Q A  AL +
Sbjct: 105 LSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 164

Query: 558 I 558
           I
Sbjct: 165 I 165

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 33/199 (16%), Positives = 77/199 (38%), Gaps = 15/199 (7%)

Query: 366 IELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFS------KQPV 419
           ++ L S         +   L  ++       +   +  +G   ++    S       Q  
Sbjct: 18  VQQLNSPDQQ-ELQSALRKLSQIASGGNEQIQA--VIDAGALPALVQLLSSPNEQILQEA 74

Query: 420 ITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQ 479
           +  L  +  G     +   +++  A+  L+ LL   NE++++ +L ALS +   G +  Q
Sbjct: 75  LWALSNIASGGNEQIQA--VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 132

Query: 480 GVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDA 539
            V+   +A  +  ++  LL    E + + A+W +  I    +   +   +      L   
Sbjct: 133 AVI---DAGALPALVQ-LLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQL 188

Query: 540 FQHADYRTRQIAERALKHI 558
             H + + ++ A+ AL+ +
Sbjct: 189 QSHENEKIQKEAQEALEKL 207

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 60.2 bits (145), Expect = 7e-10
 Identities = 63/466 (13%), Positives = 129/466 (27%), Gaps = 58/466 (12%)

Query: 40  PLLTQILEGP-QETKLSLAAFLGDLAL-NSDVKVLVARTVG-SCLINIMKSGNMQAREAA 96
           P   Q L    ++ +   A ++      +   K  V +  G   L+++++S N   ++AA
Sbjct: 5   PKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAA 64

Query: 97  LKALNQISSCEPSAKVL-IHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHD 155
             AL  +     + K+       +   V  L           +++    +L N       
Sbjct: 65  AGALRNLVFRSTTNKLETRRQNGIREAVSLL----RRTGNAEIQKQLTGLLWN------- 113

Query: 156 FDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSP-----TTVLSVV 210
              ++   + +  +  D +  L   +             +   +         T  L  +
Sbjct: 114 ---LSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNL 170

Query: 211 S--------AIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQ 262
           S            SG   SL+ +V+      R     +   +   + H L+  L   V  
Sbjct: 171 SSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCM--CVLHNLSYRLDAEVPT 228

Query: 263 LGSLIRVISENVGISKEQAAAVGLLAELPERDLGLT---------RQMLDEGAFGLIFSR 313
               +   + N    K         ++    +             +          I + 
Sbjct: 229 RYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTY 288

Query: 314 VKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNG 373
           +  +   +   +        G L  L     ++S     +    E  L  +   LLQS  
Sbjct: 289 LNLMGKSKKDATLEA---CAGALQNLTASKGLMSSGMSQLIGLKEKGLPQI-ARLLQSGN 344

Query: 374 LDKVQMVSATALENLSLESKN--------LTKLPELPPSGFCASIFPCFSKQPVITGLCR 425
              V    A+ L N+S               ++  L  S    +             +  
Sbjct: 345 -SDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRN 403

Query: 426 LHRGLCSLKETFCLLEGHAVEKLIALL-DHTNEKVVEASLAALSTV 470
           L      L +         +  +I L     + K  EA+   LS +
Sbjct: 404 LMASQPQLAKQ--YFSSSMLNNIINLCRSSASPKAAEAARLLLSDM 447

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 51.4 bits (122), Expect = 6e-07
 Identities = 52/406 (12%), Positives = 125/406 (30%), Gaps = 34/406 (8%)

Query: 5   KSENLLTVEKAEKTLANL-EKCENNVRQMAENGRLQPLLTQILE-GPQETKLSLAAFLGD 62
           +S N    + A   L NL  +   N  +      ++  ++ +   G  E +  L   L +
Sbjct: 54  RSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWN 113

Query: 63  LALNSDVKVLVAR----------------TVGSCLINIMKSGNMQAREAALKALNQISSC 106
           L+   ++K  +                            +  + +    A   L  +SS 
Sbjct: 114 LSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA 173

Query: 107 EPS-AKVLIHAGILPPLVKDL-FTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPD 164
           +     +  ++G++  L+  +   V ++    +  E    +L N+               
Sbjct: 174 DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQL 233

Query: 165 NQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQ 224
                +     +     SN    +        +    +       +    +    ++L+ 
Sbjct: 234 EYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMG 293

Query: 225 FVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISE--NVGISKEQAA 282
             ++ ++    A    +QNL+   G   +  +   +G     +  I+     G S    +
Sbjct: 294 --KSKKDATLEACAGALQNLTASKGLM-SSGMSQLIGLKEKGLPQIARLLQSGNSDVVRS 350

Query: 283 AVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARV 342
              LL+ +  R   L R M ++    +         L  T  +   +   + L S    V
Sbjct: 351 GASLLSNM-SRHPLLHRVMGNQVFPEVT------RLL--TSHTGNTSNSEDILSSACYTV 401

Query: 343 TFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENL 388
             +++ +P         ++    I L +S+   K    +   L ++
Sbjct: 402 RNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM 447

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 56.9 bits (137), Expect = 9e-09
 Identities = 73/491 (14%), Positives = 150/491 (30%), Gaps = 87/491 (17%)

Query: 80  CLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLK 139
            + +++       ++   + L  +SS + S   +  +G LP L++ L     + + +   
Sbjct: 33  MVYSLLSMLGTHDKDDMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNS 92

Query: 140 EVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTI-ECKLLQVLVG 198
             S    A                          +HN++H   +      E ++L +L  
Sbjct: 93  RGSKEARARAS---------------------AALHNIIHSQPDDKRGRREIRVLHLLEQ 131

Query: 199 LTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRG 258
           + +   T      A             + AP       ++ ++  LS        +  R 
Sbjct: 132 IRAYCETCWEWQEA--HEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD------EEHRH 183

Query: 259 AVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQ 318
           A+ +LG                   +  +AEL + D  +     D  +  L         
Sbjct: 184 AMNELG------------------GLQAIAELLQVDCEMYGLTNDHYSITLRRYAG---- 221

Query: 319 LGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQ 378
                            L+ L        D  +   LC         +  L+S   + +Q
Sbjct: 222 ---------------MALTNLTF-----GDVANKATLCSMKGCMRALVAQLKS-ESEDLQ 260

Query: 379 MVSATALENLSLESKNLTKLPELPPSGFCASIFPCF---SKQPVITGLCRLHRGLCSL-- 433
            V A+ L NLS  +   +K   L   G   ++  C     K+  +  +      L +   
Sbjct: 261 QVIASVLRNLSWRADVNSKK-TLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT 319

Query: 434 --KETFCLLEGHAVEKLIALLDH----TNEKVVEASLAALSTVIDDGVDIEQGVMVLCEA 487
             K   C ++G A+  L+  L +        ++E+    L  V       E    +L E 
Sbjct: 320 ENKADICAVDG-ALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILREN 378

Query: 488 QGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRT 547
             ++ +L   L+  +  +   A   +  +   +    E   D    + L +         
Sbjct: 379 NCLQTLLQ-HLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMI 437

Query: 548 RQIAERALKHI 558
              +  AL+++
Sbjct: 438 AMGSAAALRNL 448

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 53.8 bits (129), Expect = 7e-08
 Identities = 58/409 (14%), Positives = 131/409 (32%), Gaps = 55/409 (13%)

Query: 3   SSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGD 62
            +   +     +A   L N+   + + ++     R+  LL QI    +       A    
Sbjct: 90  GNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPG 149

Query: 63  LALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPL 122
           +                   N M +        A+  L ++S  E     +   G L  +
Sbjct: 150 M---------------DQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAI 194

Query: 123 VK------DLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVG-PDNQTLV--SEDI 173
            +      +++ + ++H  + L+  +   L N          +T G   N+  +   +  
Sbjct: 195 AELLQVDCEMYGLTNDHYSITLRRYAGMALTN----------LTFGDVANKATLCSMKGC 244

Query: 174 VHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQND- 232
           +  L+  + +    ++  +  VL  L+       +    ++  G+  +L++     + + 
Sbjct: 245 MRALVAQLKSESEDLQQVIASVLRNLSWRADV--NSKKTLREVGSVKALMECALEVKKES 302

Query: 233 LRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQA--AAVGLLAEL 290
              + +  + NLS H   E    +    G L  L+  ++     +      +  G+L  +
Sbjct: 303 TLKSVLSALWNLSAH-CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNV 361

Query: 291 PERDLG--LTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSD 348
                     RQ+L E     + + ++ ++               G L  L+      + 
Sbjct: 362 SSLIATNEDHRQILREN--NCLQTLLQHLKSHSLTIVSNAC----GTLWNLS------AR 409

Query: 349 EPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTK 397
            P       +    ++   L+ S     + M SA AL NL        K
Sbjct: 410 NPKDQEALWDMGAVSMLKNLIHSKH-KMIAMGSAAALRNLMANRPAKYK 457

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 28/198 (14%), Positives = 78/198 (39%), Gaps = 9/198 (4%)

Query: 1   MTSSKSENLLTVEKAEKTLANLEKCENNVRQM-AENGRLQPLLTQILEGPQETKLSLAAF 59
           M  +       +  A   + +    ++  R+   +   +  LL  +    ++ + ++   
Sbjct: 16  MLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGA 75

Query: 60  LGDLAL-NSDVKVLVARTVG-SCLINIMKSG-NMQAREAALKALNQISSCEPSAKVLIHA 116
           L +L   ++D K+ VA   G   L+ ++K   +++ ++     L  +SS +   K L+  
Sbjct: 76  LRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK-LKNLMIT 134

Query: 117 GILPPLVKDLFTVGSNHLPMRLKEVSATILANVVN--SGHDFDSITVGPDNQTLV--SED 172
             L  L +++    S        + +  +  ++    +G   +  + G D +  +   + 
Sbjct: 135 EALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDG 194

Query: 173 IVHNLLHLISNTGPTIEC 190
           ++ +L+H +  T    + 
Sbjct: 195 LIDSLVHYVRGTIADYQP 212

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 44.2 bits (104), Expect = 7e-05
 Identities = 12/111 (10%), Positives = 44/111 (39%), Gaps = 3/111 (2%)

Query: 448 LIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQR 507
           +   L+     +   +   + T   +   I++ V+       ++ +L +L     + ++ 
Sbjct: 87  VGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVL---GLGALRKLLRLLDRDACDTVRV 143

Query: 508 RAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHI 558
           +A++ +  ++R  +         +  + L+ A Q    + +  +   L+++
Sbjct: 144 KALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNL 194

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 42.7 bits (100), Expect = 2e-04
 Identities = 20/122 (16%), Positives = 50/122 (40%), Gaps = 5/122 (4%)

Query: 438 CLLEGHAVEKLIALLDH-TNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDV 496
            +L   A+ KL+ LLD    + V   +L A+S ++ +    E G++      G   ++  
Sbjct: 119 QVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQ---EAGLLQFLRLDGFSVLMR- 174

Query: 497 LLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALK 556
            ++++ + L+ ++ ++++ +L              +   LV   +       +    AL 
Sbjct: 175 AMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALC 234

Query: 557 HI 558
            +
Sbjct: 235 SL 236

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 39.2 bits (92), Expect = 6e-04
 Identities = 19/115 (16%), Positives = 41/115 (35%), Gaps = 27/115 (23%)

Query: 444 AVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTE 503
           A E L+  L + + ++  A+   +                  + + ++P++  LLE  + 
Sbjct: 43  AFEPLLESLSNEDWRIRGAAAWIIGN--------------FQDERAVEPLIK-LLEDDSG 87

Query: 504 NLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERAL-KH 557
            ++  A   +E+I           G   V  A+    +      R++A   L  H
Sbjct: 88  FVRSGAARSLEQI-----------GGERVRAAMEKLAETGTGFARKVAVNYLETH 131

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	572
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	100.0
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	100.0
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.95
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.94
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.94
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.94
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.93
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.93
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.91
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.9
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.89
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.88
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.87
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.85
3grl_A	651	General vesicular transport factor P115; vesicle t	99.78
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.78
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.77
3grl_A	651	General vesicular transport factor P115; vesicle t	99.77
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.7
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.68
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.65
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.64
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.59
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.55
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.52
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.5
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.45
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.45
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.4
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.35
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.35
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.34
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.32
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.3
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.3
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.28
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.27
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.25
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.19
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.0
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	98.97
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.97
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.39
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.31
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.27
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.27
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.25
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.23
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.21
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.2
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.15
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	98.05
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	97.99
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	97.98
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	97.9
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	97.72
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	97.68
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	97.53
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	97.5
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.33
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.26
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.21
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.2
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	97.16
2x19_B	963	Importin-13; nuclear transport, protein transport;	97.15
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	97.0
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	96.53
2x1g_F	971	Cadmus; transport protein, developmental protein,	95.97
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	95.75
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	95.53
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	94.98
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	94.27
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	94.21
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	93.75
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	92.97
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	92.34
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	91.73
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	91.62
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	89.63
2x19_B	963	Importin-13; nuclear transport, protein transport;	89.61
2x1g_F	971	Cadmus; transport protein, developmental protein,	89.29
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	89.17
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	87.65
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	85.86
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	85.57
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	85.18
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	82.84
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	81.22

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=100.00  E-value=7.7e-45  Score=393.76  Aligned_cols=478  Identities=16%  Similarity=0.167  Sum_probs=399.9

Q ss_pred             CCCCCCHHHHHHHHHHHHhhccCcchHHHHHHc-CCcHHHHHHHccC-CHHHHHHHHHHHHHhccCcchhHHHHhhhH-H
Q 008257            3 SSKSENLLTVEKAEKTLANLEKCENNVRQMAEN-GRLQPLLTQILEG-PQETKLSLAAFLGDLALNSDVKVLVARTVG-S   79 (572)
Q Consensus         3 ~~~s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~-g~i~~Lv~~L~~~-~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~   79 (572)
                      +++++|+.+++.|..+|.+|+.+++++..++.. |++++|+++|+++ +++++..++.+|.+++.+++++..+.+.|+ |
T Consensus        25 lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~  104 (529)
T 1jdh_A           25 LLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIP  104 (529)
T ss_dssp             HHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHH
Confidence            467899999999999999999988888888755 8999999999866 789999999999999998889999988888 9


Q ss_pred             HHHHhcccCCHHHHHHHHHHHHHhhcCC-CcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCc
Q 008257           80 CLINIMKSGNMQAREAALKALNQISSCE-PSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDS  158 (572)
Q Consensus        80 ~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~-~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~  158 (572)
                      .|+++|+++++.+|..|+++|.+|+.++ .++..+++.|++|+|+++|.++     +..++..++.+|.+++..+.+.  
T Consensus       105 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~-----~~~~~~~~~~~L~~la~~~~~~--  177 (529)
T 1jdh_A          105 ALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT-----NVKFLAITTDCLQILAYGNQES--  177 (529)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC-----CHHHHHHHHHHHHHHHTTCHHH--
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcC-----CHHHHHHHHHHHHHHHhCCHHH--
Confidence            9999999999999999999999999874 4577778999999999999864     3788999999999998743221  


Q ss_pred             cccCCCccccchhhhHHHHHHHHhcCCh-hHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHH
Q 008257          159 ITVGPDNQTLVSEDIVHNLLHLISNTGP-TIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLAS  237 (572)
Q Consensus       159 ~~~~~~~~~l~~~~~i~~Lv~lL~~~~~-~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a  237 (572)
                            ...+...|+++.|+++|+++++ ..+..+.++|.+++..+.    .+..+.+.|+++.|+.++.+++++++..+
T Consensus       178 ------~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~----~~~~~~~~g~~~~L~~ll~~~~~~~~~~a  247 (529)
T 1jdh_A          178 ------KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS----NKPAIVEAGGMQALGLHLTDPSQRLVQNC  247 (529)
T ss_dssp             ------HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTT----HHHHHHHTTHHHHHHTTTTSSCHHHHHHH
T ss_pred             ------HHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcc----cHHHHHHCCCHHHHHHHHhCCChHHHHHH
Confidence                  1345667899999999997654 566788999999998653    57788899999999999999999999999


Q ss_pred             HHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhh
Q 008257          238 IELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSI  317 (572)
Q Consensus       238 ~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~  317 (572)
                      +++|.+|+.+.+..    .... |+++.|+++|.++++  +++..|+++|++|+.++++.++.+.+.|+++.|+.+|.+.
T Consensus       248 ~~~L~~l~~~~~~~----~~~~-~~i~~L~~ll~~~~~--~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~  320 (529)
T 1jdh_A          248 LWTLRNLSDAATKQ----EGME-GLLGTLVQLLGSDDI--NVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA  320 (529)
T ss_dssp             HHHHHHHHTTCTTC----SCCH-HHHHHHHHHTTCSCH--HHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCChhh----HHHH-hHHHHHHHHHcCCCH--HHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHcc
Confidence            99999999764322    1122 789999999988775  8999999999999998888889999999999999999863


Q ss_pred             ccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCC
Q 008257          318 QLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTK  397 (572)
Q Consensus       318 ~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~  397 (572)
                      .        ....+++.++++|.+++.....++..+..+.+.|++|.|+++|+++.++.+++.++++|+|++.+..    
T Consensus       321 ~--------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~----  388 (529)
T 1jdh_A          321 G--------DREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA----  388 (529)
T ss_dssp             T--------TCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG----
T ss_pred             C--------CHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChh----
Confidence            1        1356789999999999864111133677899999999999999998346999999999999986432    


Q ss_pred             CCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHH----------------
Q 008257          398 LPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVE----------------  461 (572)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~----------------  461 (572)
                                                           +...+++.|++++|+++|++++.+++.                
T Consensus       389 -------------------------------------~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~  431 (529)
T 1jdh_A          389 -------------------------------------NHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVR  431 (529)
T ss_dssp             -------------------------------------GHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBC
T ss_pred             -------------------------------------hhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhcccc
Confidence                                                 122467899999999999876666655                


Q ss_pred             ------HHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcchhhhhhhcCCCCchHH
Q 008257          462 ------ASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTA  535 (572)
Q Consensus       462 ------~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~  535 (572)
                            .++.+|++|+.+.    .....+.+.|++++|++++ .++++.++..|+++|.++...++.+..+...+++. .
T Consensus       432 ~~~i~~~~~~al~~L~~~~----~~~~~l~~~~~v~~l~~ll-~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~-~  505 (529)
T 1jdh_A          432 MEEIVEGCTGALHILARDV----HNRIVIRGLNTIPLFVQLL-YSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATA-P  505 (529)
T ss_dssp             HHHHHHHHHHHHHHHTTSH----HHHHHHHHTTCHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHH-H
T ss_pred             HHHHHHHHHHHHHHHhcCc----hHHHHHhccCCccHHHHHH-cCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChH-H
Confidence                  4555666666542    3456789999999999999 59999999999999999987777888888777775 9


Q ss_pred             HHHHhhcCCchhHHHHHHHHHhhc
Q 008257          536 LVDAFQHADYRTRQIAERALKHID  559 (572)
Q Consensus       536 Lv~ll~~~~~~~~~~Aa~aL~~L~  559 (572)
                      |.++++++++++++.|.++|.+|+
T Consensus       506 L~~l~~~~~~~v~~~a~~aL~~l~  529 (529)
T 1jdh_A          506 LTELLHSRNEGVATYAAAVLFRMS  529 (529)
T ss_dssp             HHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred             HHHHhcCCCHHHHHHHHHHHHhcC
Confidence            999999999999999999999884

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=1.1e-45  Score=407.61  Aligned_cols=449  Identities=12%  Similarity=0.086  Sum_probs=371.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccC--cchh-HHHHhh--
Q 008257            2 TSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALN--SDVK-VLVART--   76 (572)
Q Consensus         2 ~~~~s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~--~~~k-~~i~~~--   76 (572)
                      .|++|+|+.+++.|..++.+++.++.+++.+.+.|+ ++|+.++++++..+|..|+.+|.+++.+  .+.+ ..+.+.  
T Consensus       297 ~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv-~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i  375 (810)
T 3now_A          297 AMATTDDELQQRVACECLIAASSKKDKAKALCEQGV-DILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAA  375 (810)
T ss_dssp             HHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHH-HHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCc-HHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccH
Confidence            356899999999999999999999999999999986 9999999999999999999999999752  2333 333332  


Q ss_pred             -hH-HHHHHhcccC--CHHHHHHHHHHHHHhhcCCCcHHHHH-HcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHh
Q 008257           77 -VG-SCLINIMKSG--NMQAREAALKALNQISSCEPSAKVLI-HAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVN  151 (572)
Q Consensus        77 -g~-~~Lv~lL~s~--~~~~~~~A~~aL~~Ls~~~~~~~~iv-~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~  151 (572)
                       .. +.|+++|.++  +.++++.|+++|.+|+.+++.+..++ +.|+||+|+++|++.     ++.++..|+++|.||+.
T Consensus       376 ~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~-----d~~i~~~al~~L~NLt~  450 (810)
T 3now_A          376 LKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGG-----NQSCLYGVVTTFVNLCN  450 (810)
T ss_dssp             HHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTT-----CGGGHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCC-----ChHHHHHHHHHHHHHcC
Confidence             23 6788999987  88999999999999999999988888 689999999999874     27899999999999998


Q ss_pred             cCCCCCcc--------ccCCC----------------ccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccH
Q 008257          152 SGHDFDSI--------TVGPD----------------NQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVL  207 (572)
Q Consensus       152 ~~~~~~~~--------~~~~~----------------~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~  207 (572)
                      +.+..+..        ..+++                .+.+...|+||.|+.+|+++++.+|++|+|+|.+++.++    
T Consensus       451 ~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~----  526 (810)
T 3now_A          451 AYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLK----  526 (810)
T ss_dssp             CSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSH----
T ss_pred             CchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH----
Confidence            54211000        00010                035667899999999999999999999999999999763    


Q ss_pred             HHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHH-HHhcccCChhhHHhhhccCCCChHHHHHHHHH
Q 008257          208 SVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELAD-ALRGAVGQLGSLIRVISENVGISKEQAAAVGL  286 (572)
Q Consensus       208 ~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~-~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~  286 (572)
                      +.|..+.++|++|+|+.+|.++++..|+.|+++|.+|+.+.+++..- .-... |++|+|+.+|.++.. ...+..|+++
T Consensus       527 ~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~-~aIppLv~LL~~~~~-~l~~~eAl~A  604 (810)
T 3now_A          527 ELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSL-DVIRPLLNLLQQDCT-ALENFESLMA  604 (810)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHH-HTHHHHHHTTSTTSC-HHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhh-cHHHHHHHHhCCCCc-HHHHHHHHHH
Confidence            57889999999999999999999999999999999998653333210 00112 689999999987654 2556789999


Q ss_pred             HhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHH-cCchHHH
Q 008257          287 LAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCE-HNLAALF  365 (572)
Q Consensus       287 L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~-~g~i~~L  365 (572)
                      |.||+..+++.++.++++|++|+|+.+|.+.          +..+++.|+++|++++.    +++.+..+.+ .|.+|+|
T Consensus       605 L~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~----------~~~Vq~~A~~~L~NLa~----~~~~~~~~v~~~g~l~~L  670 (810)
T 3now_A          605 LTNLASMNESVRQRIIKEQGVSKIEYYLMED----------HLYLTRAAAQCLCNLVM----SEDVIKMFEGNNDRVKFL  670 (810)
T ss_dssp             HHHHTTSCHHHHHHHHHTTHHHHHHHHHHSC----------CTTHHHHHHHHHHHHTT----SHHHHHHHHSSSSHHHHH
T ss_pred             HHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC----------CHHHHHHHHHHHHHHhC----ChHHHHHHHhccCcHHHH
Confidence            9999998888889999999999999999862          45678999999999994    6777777775 7999999


Q ss_pred             HHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhh-ccc
Q 008257          366 IELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLE-GHA  444 (572)
Q Consensus       366 v~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~-~g~  444 (572)
                      +.++.++ +..+|+.|+|+|++++..++..                                        ...+++ .|+
T Consensus       671 v~LL~s~-d~~vq~~Aa~ALanLt~~s~~~----------------------------------------~~~ii~~~g~  709 (810)
T 3now_A          671 ALLCEDE-DEETATACAGALAIITSVSVKC----------------------------------------CEKILAIASW  709 (810)
T ss_dssp             HHGGGCS-SHHHHHHHHHHHHHHHHHCHHH----------------------------------------HHHHHTSTTH
T ss_pred             HHHhcCC-CHHHHHHHHHHHHHHhCCCHHH----------------------------------------HHHHHHHcCC
Confidence            9999998 9999999999999998743211                                        123566 899


Q ss_pred             hHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhc--CCHHHHHHHHHHHHHHHcch
Q 008257          445 VEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEK--RTENLQRRAVWVVERILRTD  520 (572)
Q Consensus       445 i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~~~~~~a~~~l~~l~~~~  520 (572)
                      |++|++||.+++.+++..|+++|++++..+.   .....|.++|++++|+++++.+  .+..+.+.|..+|.++....
T Consensus       710 I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~---e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g  784 (810)
T 3now_A          710 LDILHTLIANPSPAVQHRGIVIILNMINAGE---EIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYR  784 (810)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHTTCH---HHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHhCCH---HHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999997543   4578999999999999999544  47899999999999998653

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=2.1e-44  Score=397.44  Aligned_cols=481  Identities=14%  Similarity=0.122  Sum_probs=387.5

Q ss_pred             CCCHHHHHHHHHHHHhhccCcch--HHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhHHHHHH
Q 008257            6 SENLLTVEKAEKTLANLEKCENN--VRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLIN   83 (572)
Q Consensus         6 s~~~~~~~~A~~~L~~L~~~~~n--~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~~~Lv~   83 (572)
                      ..+.+-...|..++.++...+..  ...+...|++++|+.++++.+..+|..|++++.+++.+.++|..|.+.|+|+|+.
T Consensus       258 ~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~  337 (810)
T 3now_A          258 APDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKR  337 (810)
T ss_dssp             SCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHH
T ss_pred             cCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHH
Confidence            45666667788999999874433  3444488999999999999999999999999999988888999999988899999


Q ss_pred             hcccCCHHHHHHHHHHHHHhhcCC--CcHHHHHHcCC----hHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCC
Q 008257           84 IMKSGNMQAREAALKALNQISSCE--PSAKVLIHAGI----LPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFD  157 (572)
Q Consensus        84 lL~s~~~~~~~~A~~aL~~Ls~~~--~~~~~iv~~G~----i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~  157 (572)
                      ++++++..+|..|+.+|++++.+.  ++...+++.|+    ++.|+++|.++.   .++++++.|+|.|++|+......+
T Consensus       338 Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~---~d~~v~~~AveaLayLS~~~~vk~  414 (810)
T 3now_A          338 LYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPG---KDKDIRRWAADGLAYLTLDAECKE  414 (810)
T ss_dssp             HTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSS---CCSSHHHHHHHHHHHHTTSHHHHH
T ss_pred             HHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHHHhCCcHHHH
Confidence            999999999999999999998643  23334555666    455777777641   137899999999999986432221


Q ss_pred             ccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCcc--------------------------HHHH-
Q 008257          158 SITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTV--------------------------LSVV-  210 (572)
Q Consensus       158 ~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~--------------------------~~~~-  210 (572)
                              ......|+||.|+++|+++++.++..++++|.|++.+.+..                          +.++ 
T Consensus       415 --------~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~  486 (810)
T 3now_A          415 --------KLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINK  486 (810)
T ss_dssp             --------HHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHH
T ss_pred             --------HHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHH
Confidence                    12335799999999999999999999999999999864210                          1233 


Q ss_pred             --HHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHh
Q 008257          211 --SAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLA  288 (572)
Q Consensus       211 --~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~  288 (572)
                        +.+.++|++|.|+.+|+++++.+|+.|+|+|.||+.+  .+.+..+.+. |++|+|+.+|.+++.  ..+..|+++|+
T Consensus       487 r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d--~~~r~~Vv~~-Gaip~Lv~LL~s~~~--~~k~~Aa~AL~  561 (810)
T 3now_A          487 RITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL--KELRGKVVQE-GGVKALLRMALEGTE--KGKRHATQALA  561 (810)
T ss_dssp             HHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS--HHHHHHHHHT-THHHHHHHHHHSSCH--HHHHHHHHHHH
T ss_pred             HHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHC-CCHHHHHHHHccCCH--HHHHHHHHHHH
Confidence              6788999999999999999999999999999999965  3455677777 999999999998885  88999999999


Q ss_pred             cCCCC-cHHHHH-HHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHH
Q 008257          289 ELPER-DLGLTR-QMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFI  366 (572)
Q Consensus       289 ~L~~~-~~~~~~-~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv  366 (572)
                      +|+.+ +++..- .-...|++|+|+.+|.+..         ....+..|+++|.+++..   +++.++.+++.|++|.|+
T Consensus       562 nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~---------~~l~~~eAl~AL~NLa~~---~d~~~~~Ii~aG~l~~Lv  629 (810)
T 3now_A          562 RIGITINPEVSFSGQRSLDVIRPLLNLLQQDC---------TALENFESLMALTNLASM---NESVRQRIIKEQGVSKIE  629 (810)
T ss_dssp             HHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTS---------CHHHHHHHHHHHHHHTTS---CHHHHHHHHHTTHHHHHH
T ss_pred             HHhcCCChhhhhcchhhhcHHHHHHHHhCCCC---------cHHHHHHHHHHHHHHhcC---CHHHHHHHHHcCCHHHHH
Confidence            98753 333210 0011369999999997421         122345799999999964   678888999999999999


Q ss_pred             HHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchH
Q 008257          367 ELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVE  446 (572)
Q Consensus       367 ~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~  446 (572)
                      ++|.++ ++.+|+.|+++|+|++.+....                                       ..| +...|+++
T Consensus       630 ~LL~s~-~~~Vq~~A~~~L~NLa~~~~~~---------------------------------------~~~-v~~~g~l~  668 (810)
T 3now_A          630 YYLMED-HLYLTRAAAQCLCNLVMSEDVI---------------------------------------KMF-EGNNDRVK  668 (810)
T ss_dssp             HHHHSC-CTTHHHHHHHHHHHHTTSHHHH---------------------------------------HHH-HSSSSHHH
T ss_pred             HHHcCC-CHHHHHHHHHHHHHHhCChHHH---------------------------------------HHH-HhccCcHH
Confidence            999998 8999999999999998754321                                       111 22378999


Q ss_pred             HHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHh-cCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcc-hhhhh
Q 008257          447 KLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCE-AQGIKPILDVLLEKRTENLQRRAVWVVERILRT-DDIAY  524 (572)
Q Consensus       447 ~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~-~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~-~~~~~  524 (572)
                      +|+.||++.+.+++.+|++||++|+....   .....+.+ .|++++|+++| .++++++|..|+|++.++..+ ++...
T Consensus       669 ~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~---~~~~~ii~~~g~I~~Lv~LL-~s~d~~vq~~A~~aL~NL~~~s~e~~~  744 (810)
T 3now_A          669 FLALLCEDEDEETATACAGALAIITSVSV---KCCEKILAIASWLDILHTLI-ANPSPAVQHRGIVIILNMINAGEEIAK  744 (810)
T ss_dssp             HHHHGGGCSSHHHHHHHHHHHHHHHHHCH---HHHHHHHTSTTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhCCCH---HHHHHHHHHcCCHHHHHHHH-CCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence            99999999999999999999999997432   34567777 89999999999 599999999999999999965 66777


Q ss_pred             hhcCCCCchHHHHHHhhcC---CchhHHHHHHHHHhhcc
Q 008257          525 EVSGDPNVSTALVDAFQHA---DYRTRQIAERALKHIDK  560 (572)
Q Consensus       525 ~~~~~~~~~~~Lv~ll~~~---~~~~~~~Aa~aL~~L~~  560 (572)
                      .+...++++ +|+++++..   +.++.+.|..+|.++-+
T Consensus       745 ~l~e~G~i~-~L~~LL~~~d~~~~~i~e~Al~aL~~ll~  782 (810)
T 3now_A          745 KLFETDIME-LLSGLGQLPDDTRAKAREVATQCLAAAER  782 (810)
T ss_dssp             HHHTSTHHH-HHTTSCCCTTSTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHH-HHHHHHhCcccCcHHHHHHHHHHHHHHHh
Confidence            888877775 999999765   68999999999999876

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=100.00  E-value=8.2e-44  Score=395.02  Aligned_cols=481  Identities=17%  Similarity=0.176  Sum_probs=407.2

Q ss_pred             CCCCCCHHHHHHHHHHHHhhccCcchHHHHHHc-CCcHHHHHHHccC-CHHHHHHHHHHHHHhccCcchhHHHHhhhH-H
Q 008257            3 SSKSENLLTVEKAEKTLANLEKCENNVRQMAEN-GRLQPLLTQILEG-PQETKLSLAAFLGDLALNSDVKVLVARTVG-S   79 (572)
Q Consensus         3 ~~~s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~-g~i~~Lv~~L~~~-~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~   79 (572)
                      +++++|+.+++.|+.+|.+|+..+.++..+++. |++++|++.|.++ +.+++..|+.+|.+++.+++++..+.+.|+ |
T Consensus        22 lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~  101 (644)
T 2z6h_A           22 LLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIP  101 (644)
T ss_dssp             HHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHH
T ss_pred             HHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHH
Confidence            467899999999999999999988888888765 8999999999876 789999999999999998889999998888 9


Q ss_pred             HHHHhcccCCHHHHHHHHHHHHHhhcCC-CcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCc
Q 008257           80 CLINIMKSGNMQAREAALKALNQISSCE-PSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDS  158 (572)
Q Consensus        80 ~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~-~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~  158 (572)
                      .|+++|+++++.+|..|+++|.+|+.++ +.+..+++.|+||.|+++|++.+     ..++..++.+|.+++.....   
T Consensus       102 ~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~-----~~~~~~a~~~L~~La~~~~~---  173 (644)
T 2z6h_A          102 ALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN-----VKFLAITTDCLQILAYGNQE---  173 (644)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCC-----HHHHHHHHHHHHHHHTTCHH---
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCC-----HHHHHHHHHHHHHHHhcCcH---
Confidence            9999999999999999999999999864 55677789999999999998642     57777888899999964321   


Q ss_pred             cccCCCccccchhhhHHHHHHHHhcCC-hhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHH
Q 008257          159 ITVGPDNQTLVSEDIVHNLLHLISNTG-PTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLAS  237 (572)
Q Consensus       159 ~~~~~~~~~l~~~~~i~~Lv~lL~~~~-~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a  237 (572)
                           +...+...|+++.|+++|++.+ ..++..++++|.+++..+.    .+..+.+.|+++.|+.++.+++..++..+
T Consensus       174 -----~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~----~~~~l~~~g~l~~L~~ll~~~~~~~~~~a  244 (644)
T 2z6h_A          174 -----SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS----NKPAIVEAGGMQALGLHLTDPSQRLVQNC  244 (644)
T ss_dssp             -----HHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTT----HHHHHHHTTHHHHHHTTTTCSCHHHHHHH
T ss_pred             -----HHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcc----cHHHHHHCCCHHHHHHHHhcCCHHHHHHH
Confidence                 1234667889999999998754 5678899999999997653    57888999999999999999999999999


Q ss_pred             HHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhh
Q 008257          238 IELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSI  317 (572)
Q Consensus       238 ~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~  317 (572)
                      +++|.+|+.+....    .... ++++.|+++|.+++.  +++..|+++|++|+.++++.++.+++.|+++.|+.+|.+.
T Consensus       245 ~~~L~nL~~~~~~~----~~~~-~~i~~Lv~lL~~~d~--~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~  317 (644)
T 2z6h_A          245 LWTLRNLSDAATKQ----EGME-GLLGTLVQLLGSDDI--NVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA  317 (644)
T ss_dssp             HHHHHHHGGGCTTC----CSCH-HHHHHHHHHTTCSCH--HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcchhh----hhhh-hHHHHHHHHHcCCCH--HHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHcc
Confidence            99999999763221    1112 689999999998875  8999999999999988888889999999999999999863


Q ss_pred             ccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCC
Q 008257          318 QLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTK  397 (572)
Q Consensus       318 ~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~  397 (572)
                      .        ....+++.++++|.+++....++...+..+++.|++|.|+++|+++.++.+++.|+++|+|++.+..    
T Consensus       318 ~--------~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~----  385 (644)
T 2z6h_A          318 G--------DREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA----  385 (644)
T ss_dssp             T--------TCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG----
T ss_pred             C--------CcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHH----
Confidence            1        1257789999999999863111224667789999999999999987347999999999999986432    


Q ss_pred             CCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCC----------------------
Q 008257          398 LPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHT----------------------  455 (572)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~----------------------  455 (572)
                                                           +...+++.|++++|+++|.+.                      
T Consensus       386 -------------------------------------~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~  428 (644)
T 2z6h_A          386 -------------------------------------NHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVR  428 (644)
T ss_dssp             -------------------------------------GHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSC
T ss_pred             -------------------------------------HHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhccccc
Confidence                                                 123477999999999999763                      


Q ss_pred             CHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcchhhhhhhcCCCCchHH
Q 008257          456 NEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTA  535 (572)
Q Consensus       456 ~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~  535 (572)
                      ++.+++.++.+|.+|+.+.    .....+.+.|++++|+++| .++++.++..|+++|.++...++++..+...+++. .
T Consensus       429 ~~~v~~~a~~aL~~La~~~----~~~~~l~~~~~i~~Lv~lL-~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~-~  502 (644)
T 2z6h_A          429 MEEIVEGCTGALHILARDV----HNRIVIRGLNTIPLFVQLL-YSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATA-P  502 (644)
T ss_dssp             HHHHHHHHHHHHHHHTTSH----HHHHHHHHTTCHHHHHHHT-TCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHH-H
T ss_pred             HHHHHHHHHHHHHHHhcCH----HHHHHHHhCCcHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCChh-H
Confidence            3567888999999999764    3467888999999999999 58999999999999999998888888888777775 9


Q ss_pred             HHHHhhcCCchhHHHHHHHHHhhcccC
Q 008257          536 LVDAFQHADYRTRQIAERALKHIDKIP  562 (572)
Q Consensus       536 Lv~ll~~~~~~~~~~Aa~aL~~L~~~~  562 (572)
                      |+++++++++++++.|+++|.+|....
T Consensus       503 L~~ll~~~~~~vr~~A~~aL~~l~~~~  529 (644)
T 2z6h_A          503 LTELLHSRNEGVATYAAAVLFRMSEDK  529 (644)
T ss_dssp             HHHHTTCSCHHHHHHHHHHHHHHTTTS
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHhccC
Confidence            999999999999999999999998754

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=7e-44  Score=384.20  Aligned_cols=407  Identities=17%  Similarity=0.199  Sum_probs=340.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHhhccCcch--HHHHHHcCCcHHHHHHHcc-CCHHHHHHHHHHHHHhcc-CcchhHHHHhhh
Q 008257            2 TSSKSENLLTVEKAEKTLANLEKCENN--VRQMAENGRLQPLLTQILE-GPQETKLSLAAFLGDLAL-NSDVKVLVARTV   77 (572)
Q Consensus         2 ~~~~s~~~~~~~~A~~~L~~L~~~~~n--~~~i~~~g~i~~Lv~~L~~-~~~~~~~~aa~~L~~l~~-~~~~k~~i~~~g   77 (572)
                      .+++|+|++.+..|+..++.|-+.+.|  +..++++|+||+|+++|+. +++++|.+|+++|++++. ++++++.+.+.|
T Consensus        64 ~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~G  143 (510)
T 3ul1_B           64 KGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGG  143 (510)
T ss_dssp             HHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred             HHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCC
Confidence            357999999999999999987654444  8899999999999999975 568999999999999987 778889999988


Q ss_pred             H-HHHHHhcccCCHHHHHHHHHHHHHhhcCCC-cHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCC
Q 008257           78 G-SCLINIMKSGNMQAREAALKALNQISSCEP-SAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHD  155 (572)
Q Consensus        78 ~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~-~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~  155 (572)
                      + |.|+++|+++++++++.|+++|+||+.+.+ ++..+++.|++++|+.+|.+.+.+.....+++.++|+|.|++.+...
T Consensus       144 aIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~  223 (510)
T 3ul1_B          144 AIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNP  223 (510)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSS
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccc
Confidence            8 999999999999999999999999998754 57788899999999999976421112234567788888888764321


Q ss_pred             CCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHH
Q 008257          156 FDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRL  235 (572)
Q Consensus       156 ~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~  235 (572)
                      ..                                                     ......|++|.|+.+|.+++++++.
T Consensus       224 ~~-----------------------------------------------------~~~~~~~~lp~L~~LL~~~~~~v~~  250 (510)
T 3ul1_B          224 AP-----------------------------------------------------PLDAVEQILPTLVRLLHHNDPEVLA  250 (510)
T ss_dssp             CC-----------------------------------------------------CHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred             hh-----------------------------------------------------HHHHHHhHHHHHHHHHhcCCHHHHH
Confidence            11                                                     1112356899999999999999999


Q ss_pred             HHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHh
Q 008257          236 ASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVK  315 (572)
Q Consensus       236 ~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~  315 (572)
                      .|+++|++|+.+.. +..+.+... |+++.|+++|.+++.  .++..|+++|+|++.+++..++.+++.|+++.|+.+|.
T Consensus       251 ~A~~aL~~L~~~~~-~~~~~i~~~-g~i~~Lv~lL~~~~~--~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~  326 (510)
T 3ul1_B          251 DSCWAISYLTDGPN-ERIEMVVKK-GVVPQLVKLLGATEL--PIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT  326 (510)
T ss_dssp             HHHHHHHHHTSSCH-HHHHHHHTT-TCHHHHHHHHTCSCH--HHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTT
T ss_pred             HHHHHHHHHhhchh-hhHHHHHhc-ccchhhhhhhcCCCh--hhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhc
Confidence            99999999998743 434556666 999999999999885  89999999999999988899899999999999999997


Q ss_pred             hhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhcccc
Q 008257          316 SIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNL  395 (572)
Q Consensus       316 ~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~  395 (572)
                      +.          ...+++.++++|++++.+   +++.++.+.+.|++|+|+++|+++ +..+|+.|+++|.|++....  
T Consensus       327 ~~----------~~~v~~~A~~aL~nl~a~---~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~~~~~--  390 (510)
T 3ul1_B          327 NP----------KTNIQKEATWTMSNITAG---RQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGT--  390 (510)
T ss_dssp             CS----------SHHHHHHHHHHHHHHTTS---CHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCC--
T ss_pred             CC----------CHHHHHHHHHHHHHHHcC---cHHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHccCC--
Confidence            62          456789999999999974   889999999999999999999999 99999999999999986432  


Q ss_pred             CCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCc
Q 008257          396 TKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGV  475 (572)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~  475 (572)
                                                           .+...++++.|+|++|+++|++.+++++..++.+|.++...++
T Consensus       391 -------------------------------------~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~  433 (510)
T 3ul1_B          391 -------------------------------------VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE  433 (510)
T ss_dssp             -------------------------------------HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHH
T ss_pred             -------------------------------------HHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhH
Confidence                                                 1233457899999999999999999999999999999986432


Q ss_pred             ---cchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcc
Q 008257          476 ---DIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRT  519 (572)
Q Consensus       476 ---~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~  519 (572)
                         ........|.++||+..|-++. .|.+++++++|..+|.++|..
T Consensus       434 ~~~~~~~~~~~iee~ggl~~ie~Lq-~~~n~~i~~~A~~iie~yf~~  479 (510)
T 3ul1_B          434 KLGETEKLSIMIEECGGLDKIEALQ-RHENESVYKASLNLIEKYFSV  479 (510)
T ss_dssp             TTTCHHHHHHHHHHTTHHHHHHHGG-GCSSHHHHHHHHHHHHHHCC-
T ss_pred             hccchHHHHHHHHHcCcHHHHHHHH-cCCCHHHHHHHHHHHHHHCCC
Confidence               1223456789999999986665 799999999999999999965

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=1.6e-42  Score=375.56  Aligned_cols=406  Identities=17%  Similarity=0.200  Sum_probs=338.8

Q ss_pred             CCCCCCHHHHHHHHHHHHhhccC--cchHHHHHHcCCcHHHHHHHcc-CCHHHHHHHHHHHHHhcc-CcchhHHHHhhhH
Q 008257            3 SSKSENLLTVEKAEKTLANLEKC--ENNVRQMAENGRLQPLLTQILE-GPQETKLSLAAFLGDLAL-NSDVKVLVARTVG   78 (572)
Q Consensus         3 ~~~s~~~~~~~~A~~~L~~L~~~--~~n~~~i~~~g~i~~Lv~~L~~-~~~~~~~~aa~~L~~l~~-~~~~k~~i~~~g~   78 (572)
                      +++|+|++.+..|+..++.|-+.  ...+..+++.|+||+|+++|+. .++.+|.+|+++|++++. +++++..+.+.|+
T Consensus        84 ~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Ga  163 (529)
T 3tpo_A           84 GINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGA  163 (529)
T ss_dssp             HHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTH
T ss_pred             HhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCC
Confidence            46899999999999999887543  3348899999999999999975 458899999999999998 5677888888888


Q ss_pred             -HHHHHhcccCCHHHHHHHHHHHHHhhcCC-CcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCC
Q 008257           79 -SCLINIMKSGNMQAREAALKALNQISSCE-PSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDF  156 (572)
Q Consensus        79 -~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~-~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~  156 (572)
                       |+|+.+|+++++++++.|+++|+||+.+. +++..+++.|++++|+.+|.....+.....+++.++|+|.|++.+....
T Consensus       164 ip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~  243 (529)
T 3tpo_A          164 IPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPA  243 (529)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTC
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccch
Confidence             99999999999999999999999999865 5688888999999999999754211112345677888888887653211


Q ss_pred             CccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHH
Q 008257          157 DSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLA  236 (572)
Q Consensus       157 ~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~  236 (572)
                      .                                                     ......|++|.|+.+|.+++++++..
T Consensus       244 ~-----------------------------------------------------~~~~~~~~lp~L~~LL~~~~~~v~~~  270 (529)
T 3tpo_A          244 P-----------------------------------------------------PLDAVEQILPTLVRLLHHNDPEVLAD  270 (529)
T ss_dssp             C-----------------------------------------------------CHHHHHHHHHHHHHHTTSSCHHHHHH
T ss_pred             h-----------------------------------------------------hHHHHhhHHHHHHHHhcCCcHHHHHH
Confidence            1                                                     01113568999999999999999999


Q ss_pred             HHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhh
Q 008257          237 SIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKS  316 (572)
Q Consensus       237 a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~  316 (572)
                      |+|+|++++.+. .+..+.+... |+++.|+.+|.+++.  .++..|+++|+|++.+++..+..+++.|+++.|+.+|.+
T Consensus       271 a~~aL~~l~~~~-~~~~~~v~~~-g~i~~Lv~lL~~~~~--~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~  346 (529)
T 3tpo_A          271 SCWAISYLTDGP-NERIEMVVKK-GVVPQLVKLLGATEL--PIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN  346 (529)
T ss_dssp             HHHHHHHHHSSC-HHHHHHHHTT-TCHHHHHHHHTCSCH--HHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTC
T ss_pred             HHHHHHHhhhhh-hhhHHHHHhc-cchHHHHHHhcCCCh--hHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcC
Confidence            999999999874 3444566666 999999999999885  899999999999999888998999999999999999986


Q ss_pred             hccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccC
Q 008257          317 IQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLT  396 (572)
Q Consensus       317 ~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~  396 (572)
                      .          ...+++.++|+|++++.+   +++.+..+.+.|++|+|+.+|.++ +..+|+.|+|+|+|++.+..   
T Consensus       347 ~----------~~~i~~~a~~aL~nl~~~---~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nl~~~~~---  409 (529)
T 3tpo_A          347 P----------KTNIQKEATWTMSNITAG---RQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKAAAWAITNYTSGGT---  409 (529)
T ss_dssp             S----------SHHHHHHHHHHHHHHHTS---CHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSC---
T ss_pred             C----------CHHHHHHHHHHHHHHhcc---cHHHHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCC---
Confidence            2          456788999999999974   889999999999999999999999 99999999999999986431   


Q ss_pred             CCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCc-
Q 008257          397 KLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGV-  475 (572)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~-  475 (572)
                                                          .++..++++.|+|++|++||++.+++++..++.+|.++...++ 
T Consensus       410 ------------------------------------~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~  453 (529)
T 3tpo_A          410 ------------------------------------VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEK  453 (529)
T ss_dssp             ------------------------------------HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHT
T ss_pred             ------------------------------------HHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHh
Confidence                                                1233457899999999999999999999999999999985332 


Q ss_pred             --cchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcc
Q 008257          476 --DIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRT  519 (572)
Q Consensus       476 --~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~  519 (572)
                        ........|.++||+..|-.+. .|.+++++++|..+|+++|..
T Consensus       454 ~~~~~~~~~~iee~ggl~~ie~Lq-~~~n~~i~~~A~~iie~yf~~  498 (529)
T 3tpo_A          454 LGETEKLSIMIEECGGLDKIEALQ-RHENESVYKASLNLIEKYFSV  498 (529)
T ss_dssp             TTCHHHHHHHHHHTTCHHHHTGGG-GCSSHHHHHHHHHHHHHHC--
T ss_pred             ccChHHHHHHHHHCCcHHHHHHHH-cCCCHHHHHHHHHHHHHHCCC
Confidence              1223456789999999997766 799999999999999999965

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=100.00  E-value=4.3e-42  Score=387.52  Aligned_cols=479  Identities=17%  Similarity=0.181  Sum_probs=403.7

Q ss_pred             CCCCCCHHHHHHHHHHHHhhccCcchHHHHHHc-CCcHHHHHHHccC-CHHHHHHHHHHHHHhccCcchhHHHHhhhH-H
Q 008257            3 SSKSENLLTVEKAEKTLANLEKCENNVRQMAEN-GRLQPLLTQILEG-PQETKLSLAAFLGDLALNSDVKVLVARTVG-S   79 (572)
Q Consensus         3 ~~~s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~-g~i~~Lv~~L~~~-~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~   79 (572)
                      +++++|+.+++.|+.+|.+|+..+.++..+++. |++++|++.|+++ +.++|..|+.+|.+++.+++++..+.+.|+ |
T Consensus       158 lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~  237 (780)
T 2z6g_A          158 LLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIP  237 (780)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHH
T ss_pred             HHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHH
Confidence            356789999999999999999988888888855 8999999999866 889999999999999998888888888888 9


Q ss_pred             HHHHhcccCCHHHHHHHHHHHHHhhcCC-CcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCc
Q 008257           80 CLINIMKSGNMQAREAALKALNQISSCE-PSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDS  158 (572)
Q Consensus        80 ~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~-~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~  158 (572)
                      .|+++|+++++.+|..|+++|.+|+.+. ..+..+++.|+||.|+++|.+.     +..+++.++.+|.+++..+.+.  
T Consensus       238 ~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~-----~~~v~~~a~~aL~~La~~~~e~--  310 (780)
T 2z6g_A          238 ALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT-----NVKFLAITTDCLQILAYGNQES--  310 (780)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC-----CHHHHHHHHHHHHHHHTTCHHH--
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcC-----CHHHHHHHHHHHHHHhcCChHH--
Confidence            9999999999999999999999999875 4566777999999999999864     2678999999999998643211  


Q ss_pred             cccCCCccccchhhhHHHHHHHHhcCChh-HHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHH
Q 008257          159 ITVGPDNQTLVSEDIVHNLLHLISNTGPT-IECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLAS  237 (572)
Q Consensus       159 ~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~-~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a  237 (572)
                            ...+...++++.|+++|++.+++ .+..++++|.+++..+.    .+..+.+.|+++.|+.++.+++..++..|
T Consensus       311 ------~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~----~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a  380 (780)
T 2z6g_A          311 ------KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS----NKPAIVEAGGMQALGLHLTDPSQRLVQNC  380 (780)
T ss_dssp             ------HHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTT----HHHHHHHTTHHHHHGGGTTCSCHHHHHHH
T ss_pred             ------HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChH----HHHHHHHhchHHHHHHHHcCCchHHHHHH
Confidence                  12345668899999999976654 56688999999997653    57788899999999999999999999999


Q ss_pred             HHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhh
Q 008257          238 IELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSI  317 (572)
Q Consensus       238 ~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~  317 (572)
                      +++|.+|+......    .... ++++.|+++|.+++.  .++..|+++|++|+.++++.++.+++.|+++.|+.+|.+.
T Consensus       381 ~~~L~~L~~~~~~~----~~~~-~~i~~Lv~lL~~~d~--~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~  453 (780)
T 2z6g_A          381 LWTLRNLSDAATKQ----EGME-GLLGTLVQLLGSDDI--NVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA  453 (780)
T ss_dssp             HHHHHHHHTTCTTC----SCCH-HHHHHHHHHTTCSCH--HHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHhccchhh----hhhh-hHHHHHHHHHcCCCH--HHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHcc
Confidence            99999999764321    1112 689999999998775  8999999999999998888889999999999999999862


Q ss_pred             ccCCCCCCcchhhHHHHHHHHHHHHhccCCCChH---HHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccc
Q 008257          318 QLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPD---AIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKN  394 (572)
Q Consensus       318 ~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~---~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~  394 (572)
                      .        ....+++.++++|.+++..   +++   .+..+++.|++|.|+++|.++..+.+++.|+++|+|++.+.. 
T Consensus       454 ~--------~~~~v~~~Al~aL~nL~~~---~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~-  521 (780)
T 2z6g_A          454 G--------DREDITEPAICALRHLTSR---HQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-  521 (780)
T ss_dssp             T--------TCHHHHHHHHHHHHHTTSS---STTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHH-
T ss_pred             C--------CHHHHHHHHHHHHHHHHhc---CchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHH-
Confidence            1        1236789999999999853   333   466889999999999999988345999999999999986432 


Q ss_pred             cCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCC------------------
Q 008257          395 LTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTN------------------  456 (572)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~------------------  456 (572)
                                                              +...+++.|+|++|+++|.+.+                  
T Consensus       522 ----------------------------------------~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~  561 (780)
T 2z6g_A          522 ----------------------------------------NHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVE  561 (780)
T ss_dssp             ----------------------------------------HHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCST
T ss_pred             ----------------------------------------HHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhc
Confidence                                                    1224678999999999997533                  


Q ss_pred             ----HhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcchhhhhhhcCCCCc
Q 008257          457 ----EKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNV  532 (572)
Q Consensus       457 ----~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~  532 (572)
                          ++++..++.+|++|+.+.    .....+.+.|+|++|+++| .++++.++..|+.+|.++..+++.+..+...+++
T Consensus       562 ~~~~~~v~~~a~~aL~~La~~~----~~~~~l~~~~~i~~Lv~lL-~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i  636 (780)
T 2z6g_A          562 GVRMEEIVEACTGALHILARDI----HNRIVIRGLNTIPLFVQLL-YSPIENIQRVAAGVLCELAQDKEAAEAIEAEGAT  636 (780)
T ss_dssp             TCCHHHHHHHHHHHHHHHTTSH----HHHHHHHHTCCHHHHHHGG-GCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCH
T ss_pred             ccChHHHHHHHHHHHHHHhcCh----hhHHHHHHCCcHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCH
Confidence                457788999999998653    4467788999999999999 5999999999999999999888888888887777


Q ss_pred             hHHHHHHhhcCCchhHHHHHHHHHhhcccCC
Q 008257          533 STALVDAFQHADYRTRQIAERALKHIDKIPN  563 (572)
Q Consensus       533 ~~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~  563 (572)
                      . .|++++++.++.+|+.|++||.+|.....
T Consensus       637 ~-~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~  666 (780)
T 2z6g_A          637 A-PLTELLHSRNEGVATYAAAVLFRMSEDKP  666 (780)
T ss_dssp             H-HHHHGGGCSCHHHHHHHHHHHHHHHTTSC
T ss_pred             H-HHHHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence            5 99999999999999999999999998654

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=3.5e-41  Score=360.32  Aligned_cols=395  Identities=20%  Similarity=0.212  Sum_probs=301.7

Q ss_pred             HcCCcHHHHHHHccCCHHHHHHHHHHHHHhcc-CcchhHHHHhhhH-HHHHHhcccCCHHHHHHHHHHHHHhhcC--CCc
Q 008257           34 ENGRLQPLLTQILEGPQETKLSLAAFLGDLAL-NSDVKVLVARTVG-SCLINIMKSGNMQAREAALKALNQISSC--EPS  109 (572)
Q Consensus        34 ~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~-~~~~k~~i~~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~--~~~  109 (572)
                      +.+.|++||.+|.++++++|.+|+++|.+++. ++++|..|.+.|+ |+||++|+++++++|+.|+++|+||+..  ++|
T Consensus        46 ~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~n  125 (584)
T 3l6x_A           46 RQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDN  125 (584)
T ss_dssp             CCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHH
T ss_pred             ccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHH
Confidence            45789999999999999999999999999997 7899999999888 9999999999999999999999999984  788


Q ss_pred             HHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHH
Q 008257          110 AKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIE  189 (572)
Q Consensus       110 ~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q  189 (572)
                      +..|+++|+||+|+++|++..    +..+++.|+++|+||+.++.         +...+. .++|+.|++++..+..   
T Consensus       126 k~~I~~~GaIp~LV~LL~s~~----~~~~~e~aa~aL~nLS~~~~---------~k~~I~-~~alp~Lv~LL~~p~s---  188 (584)
T 3l6x_A          126 KIAIKNCDGVPALVRLLRKAR----DMDLTEVITGTLWNLSSHDS---------IKMEIV-DHALHALTDEVIIPHS---  188 (584)
T ss_dssp             HHHHHHTTHHHHHHHHHHHCC----SHHHHHHHHHHHHHHTTSGG---------GHHHHH-HHTHHHHHHHTHHHHH---
T ss_pred             HHHHHHcCCHHHHHHHHcCCC----CHHHHHHHHHHHHHHhCCch---------hhHHHH-hccHHHHHHHHhcccc---
Confidence            999999999999999998732    36789999999999986421         011122 2334444444311000   


Q ss_pred             HHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhh
Q 008257          190 CKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRV  269 (572)
Q Consensus       190 ~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~l  269 (572)
                              ......     ..     .      -.+....+++++++|+++|+||+.+. .+.++.+++..|.++.||.+
T Consensus       189 --------g~~~~~-----~~-----~------~k~~~~~d~~V~~nAa~~L~NLs~~~-~~~R~~i~~~~Gli~~LV~~  243 (584)
T 3l6x_A          189 --------GWEREP-----NE-----D------CKPRHIEWESVLTNTAGCLRNVSSER-SEARRKLRECDGLVDALIFI  243 (584)
T ss_dssp             --------CCC--------------------------CCCCHHHHHHHHHHHHHHTSSC-HHHHHHHHHSTTHHHHHHHH
T ss_pred             --------cccccc-----cc-----c------ccccccccHHHHHHHHHHHHHHhcCC-HHHHHHHHHcCCcHHHHHHH
Confidence                    000000     00     0      00112346799999999999999874 34455677654667899999


Q ss_pred             hccC----CCChHHHHHHHHHHhcCCCCcH-------------------------HHHHHHHhCCChHHHHHHHhhhccC
Q 008257          270 ISEN----VGISKEQAAAVGLLAELPERDL-------------------------GLTRQMLDEGAFGLIFSRVKSIQLG  320 (572)
Q Consensus       270 L~~~----~~~~~~~~~A~~~L~~L~~~~~-------------------------~~~~~l~~~g~l~~Lv~lL~~~~~~  320 (572)
                      |.+.    +.....+..|+++|+||+..-.                         ...+.+++.++++.|+.+|+..   
T Consensus       244 L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s---  320 (584)
T 3l6x_A          244 VQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKES---  320 (584)
T ss_dssp             HHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHC---
T ss_pred             HHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccC---
Confidence            9752    1112788999999999876411                         0112344556678889999752   


Q ss_pred             CCCCCcchhhHHHHHHHHHHHHhccCCCC---hHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCC
Q 008257          321 ETRGSRFVTPFLEGLLSVLARVTFVLSDE---PDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTK  397 (572)
Q Consensus       321 ~~~~~~~~~~~~e~a~~aL~~l~~~~~~~---~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~  397 (572)
                            ....++|+|+++|.+++.+  ..   ..++..+.+.|++|.|++||.++ ++.+++.|+++|.||+.+..+   
T Consensus       321 ------~~~~v~E~Aa~AL~nL~ag--~~~~~~~~~~~v~~~~glp~Lv~LL~s~-~~~v~~~A~~aL~nLs~~~~~---  388 (584)
T 3l6x_A          321 ------KTPAILEASAGAIQNLCAG--RWTYGRYIRSALRQEKALSAIADLLTNE-HERVVKAASGALRNLAVDARN---  388 (584)
T ss_dssp             ------CCHHHHHHHHHHHHHHHSS--CSHHHHHHHHHHTSHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHTTCSC---
T ss_pred             ------CCHHHHHHHHHHHHHHHcC--CccccHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHhCChhH---
Confidence                  2467899999999999864  22   24556778889999999999999 999999999999999864321   


Q ss_pred             CCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCC--------CHhHHHHHHHHHHH
Q 008257          398 LPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHT--------NEKVVEASLAALST  469 (572)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~--------~~~v~~~A~~aL~~  469 (572)
                                                            . .+++.|+||+||++|.++        +++++..|+++|.+
T Consensus       389 --------------------------------------~-~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~N  429 (584)
T 3l6x_A          389 --------------------------------------K-ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINE  429 (584)
T ss_dssp             --------------------------------------H-HHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHH
T ss_pred             --------------------------------------H-HHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHH
Confidence                                                  1 244789999999999876        46889999999999


Q ss_pred             hhhcCccchhhHHHHHhcCChHHHHHHHhhcC--CHHHHHHHHHHHHHHHcchhhhhhhcC
Q 008257          470 VIDDGVDIEQGVMVLCEAQGIKPILDVLLEKR--TENLQRRAVWVVERILRTDDIAYEVSG  528 (572)
Q Consensus       470 l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~--~~~~~~~a~~~l~~l~~~~~~~~~~~~  528 (572)
                      |+..+.   .+...|.++|||++|+++++ ++  ++.+++.|+++|.++..+.+.+..|..
T Consensus       430 L~a~~~---~~~~~I~~~g~I~~Lv~LL~-s~~~~~~v~k~Aa~vL~nl~~~~elr~~~kk  486 (584)
T 3l6x_A          430 VIAENL---EAAKKLRETQGIEKLVLINK-SGNRSEKEVRAAALVLQTIWGYKELRKPLEK  486 (584)
T ss_dssp             HHTTCH---HHHHHHHHTTHHHHHHHHHT-CSSSCHHHHHHHHHHHHHHHTSHHHHHHHHT
T ss_pred             HhcCCH---HHHHHHHHCCChHHHHHHHh-CCCCChHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence            986543   56788999999999999995 54  889999999999999999888877766

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=1.5e-40  Score=358.17  Aligned_cols=406  Identities=13%  Similarity=0.162  Sum_probs=342.2

Q ss_pred             HHHHHHhcccCCHHHHHHHHHHHHHhhcCCCc--HHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCC
Q 008257           78 GSCLINIMKSGNMQAREAALKALNQISSCEPS--AKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHD  155 (572)
Q Consensus        78 ~~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~--~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~  155 (572)
                      ++.||+.|+|++++.|..|+.++++|.+.+.|  .+.++++|+||+||++|++.    .++.+|..|+|+|+||++++.+
T Consensus        59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~----~~~~lq~~Aa~aL~nias~~~e  134 (510)
T 3ul1_B           59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKT----DCSPIQFESAWALTNIASGTSE  134 (510)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCT----TCHHHHHHHHHHHHHHHTSCHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCC----CCHHHHHHHHHHHHHHhcCCHH
Confidence            48999999999999999999999998876555  78999999999999999753    2378999999999999975432


Q ss_pred             CCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCH----
Q 008257          156 FDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQN----  231 (572)
Q Consensus       156 ~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~----  231 (572)
                      .        ...++..|+||.|+++|.++++++++.|+++|.+++.+.   +..+..+.+.|++++|+.+|..++.    
T Consensus       135 ~--------~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~---~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~  203 (510)
T 3ul1_B          135 Q--------TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDG---SAFRDLVIKHGAIDPLLALLAVPDLSTLA  203 (510)
T ss_dssp             H--------HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC---HHHHHHHHHTTCHHHHHHHTCSSCGGGSC
T ss_pred             H--------HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC---HHHHHHHHHcCChHHHHHHHHhccchhhh
Confidence            2        245778899999999999999999999999999999876   3678899999999999999987652    


Q ss_pred             -HHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHH
Q 008257          232 -DLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLI  310 (572)
Q Consensus       232 -~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~L  310 (572)
                       .++..++++|++++.+..... ...... |+++.|+++|.+++.  +++..|+++|++|+.++.+..+.+++.|++|.|
T Consensus       204 ~~~~~~a~~~L~nl~~~~~~~~-~~~~~~-~~lp~L~~LL~~~~~--~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~L  279 (510)
T 3ul1_B          204 CGYLRNLTWTLSNLCRNKNPAP-PLDAVE-QILPTLVRLLHHNDP--EVLADSCWAISYLTDGPNERIEMVVKKGVVPQL  279 (510)
T ss_dssp             HHHHHHHHHHHHHHHCCCSSCC-CHHHHH-HHHHHHHHHTTCSCH--HHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHH
T ss_pred             HHHHHHHHHHHHHHhhcccchh-HHHHHH-hHHHHHHHHHhcCCH--HHHHHHHHHHHHHhhchhhhHHHHHhcccchhh
Confidence             468899999999987532211 112222 789999999999886  899999999999999888888889999999999


Q ss_pred             HHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhh
Q 008257          311 FSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSL  390 (572)
Q Consensus       311 v~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~  390 (572)
                      +.+|.+          ....++..++.+|.+++..   ++.....+.+.|++|.|+.+|+++ ++.+|+.|+|+|.|++.
T Consensus       280 v~lL~~----------~~~~v~~~al~aL~nl~~~---~~~~~~~i~~~g~l~~L~~LL~~~-~~~v~~~A~~aL~nl~a  345 (510)
T 3ul1_B          280 VKLLGA----------TELPIVTPALRAIGNIVTG---TDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITA  345 (510)
T ss_dssp             HHHHTC----------SCHHHHHHHHHHHHHHTTS---CHHHHHHHHHTTGGGGCC-CTTCS-SHHHHHHHHHHHHHHTT
T ss_pred             hhhhcC----------CChhhhhHHHHHHHHhhcC---CHHHHHHHhhccchHHHHHHhcCC-CHHHHHHHHHHHHHHHc
Confidence            999986          2456789999999999864   788888999999999999999998 99999999999999986


Q ss_pred             hccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHh
Q 008257          391 ESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTV  470 (572)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l  470 (572)
                      ....                                        ....+++.|++|+|+++|.+++.+++..|++||+++
T Consensus       346 ~~~~----------------------------------------~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl  385 (510)
T 3ul1_B          346 GRQD----------------------------------------QIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNY  385 (510)
T ss_dssp             SCHH----------------------------------------HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred             CcHH----------------------------------------HHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            4321                                        223467899999999999999999999999999999


Q ss_pred             hhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcc-------hhhhhhhcCCCCchHHHHHHhhcC
Q 008257          471 IDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRT-------DDIAYEVSGDPNVSTALVDAFQHA  543 (572)
Q Consensus       471 ~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~-------~~~~~~~~~~~~~~~~Lv~ll~~~  543 (572)
                      +.++.  ......+.+.|+|++|+++| .++|+.++..++++|.+|+..       +.++..+...+|+. .|-.|..+.
T Consensus       386 ~~~~~--~~~~~~L~~~g~i~~L~~LL-~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~-~ie~Lq~~~  461 (510)
T 3ul1_B          386 TSGGT--VEQIVYLVHCGIIEPLMNLL-SAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLD-KIEALQRHE  461 (510)
T ss_dssp             HHHCC--HHHHHHHHHTTCHHHHHHGG-GCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHH-HHHHGGGCS
T ss_pred             HccCC--HHHHHHHHHCCCHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHH-HHHHHHcCC
Confidence            97653  24467799999999999999 599999999999999999853       23444566666774 777777889


Q ss_pred             CchhHHHHHHHHHhhcc
Q 008257          544 DYRTRQIAERALKHIDK  560 (572)
Q Consensus       544 ~~~~~~~Aa~aL~~L~~  560 (572)
                      +.+++++|..+|.+.+.
T Consensus       462 n~~i~~~A~~iie~yf~  478 (510)
T 3ul1_B          462 NESVYKASLNLIEKYFS  478 (510)
T ss_dssp             SHHHHHHHHHHHHHHCC
T ss_pred             CHHHHHHHHHHHHHHCC
Confidence            99999999999988764

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=100.00  E-value=1.9e-40  Score=359.32  Aligned_cols=449  Identities=14%  Similarity=0.167  Sum_probs=361.5

Q ss_pred             CCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccC-cchhHHHHhhhH-HHHHH
Q 008257            6 SENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALN-SDVKVLVARTVG-SCLIN   83 (572)
Q Consensus         6 s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~-~~~k~~i~~~g~-~~Lv~   83 (572)
                      ++|+.+++.|+.+|.+|+.+++++..+.+.|++++|+++|++++++++..++++|.+++.+ ++.+..+.+.|+ |.|++
T Consensus        71 ~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~  150 (529)
T 1jdh_A           71 TNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVA  150 (529)
T ss_dssp             CCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHH
Confidence            4589999999999999999988999999999999999999999999999999999999984 567778888888 99999


Q ss_pred             hcccCCHHHHHHHHHHHHHhhcC-CCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccC
Q 008257           84 IMKSGNMQAREAALKALNQISSC-EPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVG  162 (572)
Q Consensus        84 lL~s~~~~~~~~A~~aL~~Ls~~-~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~  162 (572)
                      +|++++.+++..++.+|.+|+.. ++++..+++.|++|.|+++|++.+    +...++.++.+|.|++.+...       
T Consensus       151 ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~----~~~~~~~a~~~L~~l~~~~~~-------  219 (529)
T 1jdh_A          151 LLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT----YEKLLWTTSRVLKVLSVCSSN-------  219 (529)
T ss_dssp             GGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCC----CHHHHHHHHHHHHHHTTSTTH-------
T ss_pred             HHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCC----hHHHHHHHHHHHHHHhcCccc-------
Confidence            99999999999999999999974 567888899999999999998742    367788899999999864321       


Q ss_pred             CCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHH
Q 008257          163 PDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQ  242 (572)
Q Consensus       163 ~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~  242 (572)
                        ...+...|+++.|++++.+++++++..++++|.+++.......      ...|+++.|+.++.+++++++..|+++|+
T Consensus       220 --~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~------~~~~~i~~L~~ll~~~~~~v~~~a~~~L~  291 (529)
T 1jdh_A          220 --KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE------GMEGLLGTLVQLLGSDDINVVTCAAGILS  291 (529)
T ss_dssp             --HHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS------CCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             --HHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH------HHHhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence              2356678999999999999999999999999999998754211      12478999999999999999999999999


Q ss_pred             HcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHH---HHHHHHhCCChHHHHHHHhhhcc
Q 008257          243 NLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLG---LTRQMLDEGAFGLIFSRVKSIQL  319 (572)
Q Consensus       243 ~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~---~~~~l~~~g~l~~Lv~lL~~~~~  319 (572)
                      +|+.+. .+..+.+.+. |+++.|+++|.+.++...++..|+++|+|++.++++   .+..+.+.|++|.|+.+|.+.. 
T Consensus       292 ~L~~~~-~~~~~~~~~~-~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~-  368 (529)
T 1jdh_A          292 NLTCNN-YKNKMMVCQV-GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPS-  368 (529)
T ss_dssp             HHTTTC-HHHHHHHHHT-THHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTC-
T ss_pred             HHhcCC-HHHHHHHHHc-CChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhcccc-
Confidence            999874 3444567776 999999999986432248999999999999875433   4678899999999999998621 


Q ss_pred             CCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHH--hhhhccccCC
Q 008257          320 GETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALEN--LSLESKNLTK  397 (572)
Q Consensus       320 ~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~--ls~~~~~~~~  397 (572)
                              ...+++.++++|.+++.    ++..+..+.+.|++|.|+++|+++ ++++|+.|+|++.|  +......   
T Consensus       369 --------~~~v~~~a~~~l~nl~~----~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~l~n~~~~~~~~~---  432 (529)
T 1jdh_A          369 --------HWPLIKATVGLIRNLAL----CPANHAPLREQGAIPRLVQLLVRA-HQDTQRRTSMGGTQQQFVEGVRM---  432 (529)
T ss_dssp             --------CHHHHHHHHHHHHHHTT----SGGGHHHHHHTTHHHHHHHHHHHH-HHHHC-----------CBTTBCH---
T ss_pred             --------chHHHHHHHHHHHHHhc----ChhhhHHHHHcCCHHHHHHHHHHH-hHHHHHHHhcccCchhhhccccH---
Confidence                    24678899999999994    566778899999999999999998 89999999999988  2211000   


Q ss_pred             CCCCCCCCCCccccc-cccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCcc
Q 008257          398 LPELPPSGFCASIFP-CFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVD  476 (572)
Q Consensus       398 ~~~~~~~~~~~~~~~-~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~  476 (572)
                                ..+.. ++      ..+|..   ..+..+...+.+.|++++|+++|.+++++++..|+.+|++|+.++  
T Consensus       433 ----------~~i~~~~~------~al~~L---~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~--  491 (529)
T 1jdh_A          433 ----------EEIVEGCT------GALHIL---ARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK--  491 (529)
T ss_dssp             ----------HHHHHHHH------HHHHHH---TTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSH--
T ss_pred             ----------HHHHHHHH------HHHHHH---hcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCH--
Confidence                      00000 00      001110   012244556889999999999999999999999999999998653  


Q ss_pred             chhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 008257          477 IEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERI  516 (572)
Q Consensus       477 ~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l  516 (572)
                        .....|.+.||++.|.+++ .++++.++++|.++|.++
T Consensus       492 --~~~~~i~~~~~~~~L~~l~-~~~~~~v~~~a~~aL~~l  528 (529)
T 1jdh_A          492 --EAAEAIEAEGATAPLTELL-HSRNEGVATYAAAVLFRM  528 (529)
T ss_dssp             --HHHHHHHHTTCHHHHHHGG-GCSSHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHcCChHHHHHHh-cCCCHHHHHHHHHHHHhc
Confidence              4577899999999999999 699999999999999887

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=3.3e-41  Score=358.00  Aligned_cols=366  Identities=14%  Similarity=0.133  Sum_probs=294.3

Q ss_pred             CcHHHHHHHccCCHHHHHHHHHHHHHhcc-CcchhHHHHhhhH-HHHHHhcccCCHHHHHHHHHHHHHhhcC-CCcHHHH
Q 008257           37 RLQPLLTQILEGPQETKLSLAAFLGDLAL-NSDVKVLVARTVG-SCLINIMKSGNMQAREAALKALNQISSC-EPSAKVL  113 (572)
Q Consensus        37 ~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~-~~~~k~~i~~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~-~~~~~~i  113 (572)
                      .+++|+++|+++++++|..|+++|.+++. ++++|..+.+.|+ |+||++|+++++++|+.|+++|+||+.+ ++++..|
T Consensus         3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i   82 (457)
T 1xm9_A            3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET   82 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred             CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            47999999999999999999999999987 4566878888888 9999999999999999999999999986 7889999


Q ss_pred             HHcCChHHHHHHHh-ccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHH
Q 008257          114 IHAGILPPLVKDLF-TVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKL  192 (572)
Q Consensus       114 v~~G~i~~Lv~lL~-s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a  192 (572)
                      +++|+||+|+++|+ ++     ++++++.|+|+|+||+.++.                                      
T Consensus        83 ~~~G~i~~Lv~lL~~~~-----~~~~~~~a~~aL~nLa~~~~--------------------------------------  119 (457)
T 1xm9_A           83 RRQNGIREAVSLLRRTG-----NAEIQKQLTGLLWNLSSTDE--------------------------------------  119 (457)
T ss_dssp             HHTTCHHHHHHHHTTCC-----CHHHHHHHHHHHHHHHTSSS--------------------------------------
T ss_pred             HHcCCHHHHHHHHhhCC-----CHHHHHHHHHHHHHHhcCHH--------------------------------------
Confidence            99999999999998 43     37899999999999987521                                      


Q ss_pred             HHHHHHccCCCCccHHHHHHHHhcCChHHHHHHh--------cC--------CCHHHHHHHHHHHHHcCCCCChhHHHHH
Q 008257          193 LQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFV--------EA--------PQNDLRLASIELIQNLSPHMGHELADAL  256 (572)
Q Consensus       193 ~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL--------~~--------~~~~v~~~a~~~L~~Ls~~~~~~~~~~i  256 (572)
                                      .+..+.+ |++|+|+.+|        .+        .+++++.+|+|+|+||+.+  ++..+.+
T Consensus       120 ----------------~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~--~~~~~~i  180 (457)
T 1xm9_A          120 ----------------LKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA--DAGRQTM  180 (457)
T ss_dssp             ----------------THHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS--HHHHHHH
T ss_pred             ----------------hHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccC--HHHHHHH
Confidence                            1334445 6666666666        22        3466777999999999987  4455566


Q ss_pred             hcccCChhhHHhhhcc------CCCChHHHHHHHHHHhcCCCC-------------------------------------
Q 008257          257 RGAVGQLGSLIRVISE------NVGISKEQAAAVGLLAELPER-------------------------------------  293 (572)
Q Consensus       257 ~~~~g~l~~Lv~lL~~------~~~~~~~~~~A~~~L~~L~~~-------------------------------------  293 (572)
                      .+.+|+++.|+.+|.+      .+.  .....|+++|.+|+..                                     
T Consensus       181 ~~~~g~i~~Lv~lL~~~~~~~~~~~--~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (457)
T 1xm9_A          181 RNYSGLIDSLMAYVQNCVAASRCDD--KSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMM  258 (457)
T ss_dssp             TTSTTHHHHHHHHHHHHHHHTCTTC--TTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---------------------
T ss_pred             HHcCCCHHHHHHHHHhhccccCCch--HHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhh
Confidence            6533899999999986      232  5666778888887631                                     


Q ss_pred             -------------cHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCCh---HH-HHHH
Q 008257          294 -------------DLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEP---DA-IALC  356 (572)
Q Consensus       294 -------------~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~---~~-~~~i  356 (572)
                                   ++...+.+++.|+++.|+.+|.+.+         .+.++|.++|+|++++.+  +++   .. +..+
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~---------~~~~~e~a~~aL~nl~~~--~~~~~~~~~~~~v  327 (457)
T 1xm9_A          259 NNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSK---------KDATLEACAGALQNLTAS--KGLMSSGMSQLIG  327 (457)
T ss_dssp             -------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHHHTTC--SSSHHHHHHHHHH
T ss_pred             hccccCCccccccCchHHHHHhCcchHHHHHHHHhhcC---------CHHHHHHHHHHHHHhccC--cCcchHHHHHHHH
Confidence                         0112245677889999999998732         467899999999999975  333   23 4455


Q ss_pred             HHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccch
Q 008257          357 CEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKET  436 (572)
Q Consensus       357 ~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~  436 (572)
                      .+.|++|+|+++|.++ ++++|+.|+|+|.|++.+..                                         + 
T Consensus       328 ~~~~~l~~Lv~LL~~~-~~~v~~~A~~aL~nls~~~~-----------------------------------------~-  364 (457)
T 1xm9_A          328 LKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRHPL-----------------------------------------L-  364 (457)
T ss_dssp             TTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSGG-----------------------------------------G-
T ss_pred             HHcCCchHHHHHHhCC-CHhHHHHHHHHHHHHhcCHH-----------------------------------------H-
Confidence            6799999999999999 99999999999999986431                                         1 


Q ss_pred             hhhhhccchHHHHHhhcCCC------HhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcC-CHHHHHHH
Q 008257          437 FCLLEGHAVEKLIALLDHTN------EKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKR-TENLQRRA  509 (572)
Q Consensus       437 ~~l~~~g~i~~Lv~lL~~~~------~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~-~~~~~~~a  509 (572)
                      ..++..|+|++||++|.+++      ++++..++++|+++...+.   .....+.++||+++|++++ .++ ++.++++|
T Consensus       365 ~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~---~~~~~i~~~g~l~~L~~L~-~~~~~~~i~~~A  440 (457)
T 1xm9_A          365 HRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQP---QLAKQYFSSSMLNNIINLC-RSSASPKAAEAA  440 (457)
T ss_dssp             HHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCT---HHHHHHCCHHHHHHHHHHH-HCTTCHHHHHHH
T ss_pred             HHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCH---HHHHHHHHcCCHHHHHHHH-cCCCcHHHHHHH
Confidence            12456789999999999864      4789999999999987554   4678899999999999999 588 99999999


Q ss_pred             HHHHHHHHcchhhhh
Q 008257          510 VWVVERILRTDDIAY  524 (572)
Q Consensus       510 ~~~l~~l~~~~~~~~  524 (572)
                      .++|.+++.+.+.+.
T Consensus       441 ~~~L~~~~~~~~l~~  455 (457)
T 1xm9_A          441 RLLLSDMWSSKELQG  455 (457)
T ss_dssp             HHHHHTTSSSTTCSS
T ss_pred             HHHHHHHHcchhhhc
Confidence            999999998876653

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=2.4e-39  Score=350.66  Aligned_cols=406  Identities=13%  Similarity=0.166  Sum_probs=342.3

Q ss_pred             HHHHHHhcccCCHHHHHHHHHHHHHhhcCCCc--HHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCC
Q 008257           78 GSCLINIMKSGNMQAREAALKALNQISSCEPS--AKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHD  155 (572)
Q Consensus        78 ~~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~--~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~  155 (572)
                      ++.+|+.+.|++++.|..|+.++++|.+.+.+  .+.+++.|+||+||++|...    .++.+|..|+|+|+||+.++..
T Consensus        78 l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~----~~~~~q~~Aa~aL~nia~~~~~  153 (529)
T 3tpo_A           78 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKT----DCSPIQFESAWALTNIASGTSE  153 (529)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCT----TCHHHHHHHHHHHHHHHTSCHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCC----CCHHHHHHHHHHHHHHHcCCHH
Confidence            48999999999999999999999998765444  68899999999999999753    2478999999999999976432


Q ss_pred             CCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCC-----
Q 008257          156 FDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQ-----  230 (572)
Q Consensus       156 ~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-----  230 (572)
                      .        ...+...|+||.|+.+|.++++++++.|+++|.+++.+.   +..+..+.+.|++++|+.+|..++     
T Consensus       154 ~--------~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~---~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~  222 (529)
T 3tpo_A          154 Q--------TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAG---SAFRDLVIKHGAIDPLLALLAVPDLSTLA  222 (529)
T ss_dssp             H--------HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC---HHHHHHHHHTTCHHHHHHTTCSSCGGGSC
T ss_pred             H--------HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccC---HHHHHHHHHcCCcHHHHHHHhccchhHhH
Confidence            2        135778899999999999999999999999999999875   367889999999999999998764     


Q ss_pred             HHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHH
Q 008257          231 NDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLI  310 (572)
Q Consensus       231 ~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~L  310 (572)
                      ..++..++++|++++.+..... ...... |++|.|+++|.++++  +++..|+++|++++.++.+..+.+++.|++|.|
T Consensus       223 ~~~~~~a~~~L~nl~~~~~~~~-~~~~~~-~~lp~L~~LL~~~~~--~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~L  298 (529)
T 3tpo_A          223 CGYLRNLTWTLSNLCRNKNPAP-PLDAVE-QILPTLVRLLHHNDP--EVLADSCWAISYLTDGPNERIEMVVKKGVVPQL  298 (529)
T ss_dssp             HHHHHHHHHHHHHHHCCCTTCC-CHHHHH-HHHHHHHHHTTSSCH--HHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccchh-hHHHHh-hHHHHHHHHhcCCcH--HHHHHHHHHHHHhhhhhhhhHHHHHhccchHHH
Confidence            2468899999999987632211 112222 789999999999886  899999999999999888888889999999999


Q ss_pred             HHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhh
Q 008257          311 FSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSL  390 (572)
Q Consensus       311 v~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~  390 (572)
                      +.+|.+          ....+++.++.+|.+++.+   ++.....+.+.|++|.|+.+|+++ ++.+|+.|+|+|+|++.
T Consensus       299 v~lL~~----------~~~~v~~~a~~aL~nl~~~---~~~~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~  364 (529)
T 3tpo_A          299 VKLLGA----------TELPIVTPALRAIGNIVTG---TDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITA  364 (529)
T ss_dssp             HHHHTC----------SCHHHHHHHHHHHHHHTTS---CHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHT
T ss_pred             HHHhcC----------CChhHHHHHHHHHHHHHcc---chHHHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhc
Confidence            999986          2466788999999999874   788888999999999999999998 99999999999999986


Q ss_pred             hccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHh
Q 008257          391 ESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTV  470 (572)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l  470 (572)
                      +...                                        ....+++.|++|+|+.+|.+++.+++..|++||+++
T Consensus       365 ~~~~----------------------------------------~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl  404 (529)
T 3tpo_A          365 GRQD----------------------------------------QIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNY  404 (529)
T ss_dssp             SCHH----------------------------------------HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred             ccHH----------------------------------------HHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            4331                                        122367899999999999999999999999999999


Q ss_pred             hhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcc-------hhhhhhhcCCCCchHHHHHHhhcC
Q 008257          471 IDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRT-------DDIAYEVSGDPNVSTALVDAFQHA  543 (572)
Q Consensus       471 ~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~-------~~~~~~~~~~~~~~~~Lv~ll~~~  543 (572)
                      +.++.  .+....+.+.|+|++|+++| .++|+.+...++++|.+|+..       +.+...+...+++. .|-.|..+.
T Consensus       405 ~~~~~--~~~~~~l~~~g~i~~L~~LL-~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~-~ie~Lq~~~  480 (529)
T 3tpo_A          405 TSGGT--VEQIVYLVHCGIIEPLMNLL-SAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLD-KIEALQRHE  480 (529)
T ss_dssp             HHHSC--HHHHHHHHHTTCHHHHHHGG-GCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHH-HHTGGGGCS
T ss_pred             HcCCC--HHHHHHHHHCcCHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHH-HHHHHHcCC
Confidence            97643  24467799999999999999 599999999999999999853       23444566667775 788888899


Q ss_pred             CchhHHHHHHHHHhhcc
Q 008257          544 DYRTRQIAERALKHIDK  560 (572)
Q Consensus       544 ~~~~~~~Aa~aL~~L~~  560 (572)
                      +.+++++|..+|...+.
T Consensus       481 n~~i~~~A~~iie~yf~  497 (529)
T 3tpo_A          481 NESVYKASLNLIEKYFS  497 (529)
T ss_dssp             SHHHHHHHHHHHHHHC-
T ss_pred             CHHHHHHHHHHHHHHCC
Confidence            99999999999988764

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=100.00  E-value=4.5e-39  Score=356.94  Aligned_cols=452  Identities=14%  Similarity=0.153  Sum_probs=363.2

Q ss_pred             CCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhcc-CcchhHHHHhhhH-HHHHH
Q 008257            6 SENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLAL-NSDVKVLVARTVG-SCLIN   83 (572)
Q Consensus         6 s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~-~~~~k~~i~~~g~-~~Lv~   83 (572)
                      ++++.++..|+.+|.+|+..++++..+.+.|++++|+++|+++++.+|..|+++|.+++. .++.+..+.+.|+ |.|++
T Consensus        68 ~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~  147 (644)
T 2z6h_A           68 TNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVA  147 (644)
T ss_dssp             CCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHH
Confidence            458999999999999999998899999999999999999999999999999999999998 4567778887887 99999


Q ss_pred             hcccCCHHHHHHHHHHHHHhhc-CCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccC
Q 008257           84 IMKSGNMQAREAALKALNQISS-CEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVG  162 (572)
Q Consensus        84 lL~s~~~~~~~~A~~aL~~Ls~-~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~  162 (572)
                      +|++++++++..++.+|.+|+. +++++..+++.|+++.|+++|.+..    ....++.++.+|.|++.+..        
T Consensus       148 lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~----~~~~~~~a~~~L~nLs~~~~--------  215 (644)
T 2z6h_A          148 LLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT----YEKLLWTTSRVLKVLSVCSS--------  215 (644)
T ss_dssp             GGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCC----CHHHHHHHHHHHHHHTTCTT--------
T ss_pred             HHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCC----hHHHHHHHHHHHHHHhcCcc--------
Confidence            9999999999999999999996 6778889999999999999998642    36788999999999986432        


Q ss_pred             CCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHH
Q 008257          163 PDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQ  242 (572)
Q Consensus       163 ~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~  242 (572)
                       +...+...|+++.|++++.+++++++..++++|.+++...... .     ...++++.|+.+|+++++++++.|+++|.
T Consensus       216 -~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~-~-----~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~  288 (644)
T 2z6h_A          216 -NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ-E-----GMEGLLGTLVQLLGSDDINVVTCAAGILS  288 (644)
T ss_dssp             -HHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC-C-----SCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             -cHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh-h-----hhhhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence             1235677899999999999999999999999999999764321 1     12378999999999999999999999999


Q ss_pred             HcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcH---HHHHHHHhCCChHHHHHHHhhhcc
Q 008257          243 NLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDL---GLTRQMLDEGAFGLIFSRVKSIQL  319 (572)
Q Consensus       243 ~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~---~~~~~l~~~g~l~~Lv~lL~~~~~  319 (572)
                      +|+.+. .+..+.+.+. |+++.|+++|.+.++...++..|+++|++|+..++   ..+..+.+.|+++.|+.+|.+.  
T Consensus       289 ~L~~~~-~~~~~~v~~~-g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~--  364 (644)
T 2z6h_A          289 NLTCNN-YKNKMMVCQV-GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPP--  364 (644)
T ss_dssp             HHHTTC-HHHHHHHHHT-THHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTT--
T ss_pred             HHHcCC-HHHHHHHHHc-CCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCcc--
Confidence            999763 3444566666 99999999998744223899999999999987433   3445588999999999999862  


Q ss_pred             CCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHH--hhhhccccCC
Q 008257          320 GETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALEN--LSLESKNLTK  397 (572)
Q Consensus       320 ~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~--ls~~~~~~~~  397 (572)
                             ....+++.++++|.+++.    ++..++.+.+.|++|.|+++|.++ +..+|+.|+|++.+  +.......  
T Consensus       365 -------~~~~v~~~a~~~L~nLa~----~~~~~~~i~~~~~i~~Lv~lL~~~-~~~vr~~a~~al~n~~~~~~~~~~--  430 (644)
T 2z6h_A          365 -------SHWPLIKATVGLIRNLAL----CPANHAPLREQGAIPRLVQLLVRA-HQDTQRRTSMGGTQQQFVEGVRME--  430 (644)
T ss_dssp             -------CCHHHHHHHHHHHHHHTT----SGGGHHHHHHTTHHHHHHHHHHHH-HHHHTTC----------CCSSCHH--
T ss_pred             -------CchHHHHHHHHHHHHHcc----CHHHHHHHHHcCCHHHHHHHHhcc-chhhhhHhhhccccchhcccccHH--
Confidence                   134678899999999994    566778899999999999999997 78888888887766  22100000  


Q ss_pred             CCCCCCCCCCccccccccCCCccccccccccCc-cCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCcc
Q 008257          398 LPELPPSGFCASIFPCFSKQPVITGLCRLHRGL-CSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVD  476 (572)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~-~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~  476 (572)
                                 .+.         ...|.+...+ .+..+.+.+.+.|+|++|+++|.+.+++++..|+.+|++++.+.  
T Consensus       431 -----------~v~---------~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~--  488 (644)
T 2z6h_A          431 -----------EIV---------EGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK--  488 (644)
T ss_dssp             -----------HHH---------HHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSH--
T ss_pred             -----------HHH---------HHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCH--
Confidence                       000         0000000000 01234556779999999999999999999999999999999653  


Q ss_pred             chhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcc
Q 008257          477 IEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRT  519 (572)
Q Consensus       477 ~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~  519 (572)
                        .....|.++||++.|.+++ .++++.+++.|+++|.++..+
T Consensus       489 --~~~~~i~~~g~l~~L~~ll-~~~~~~vr~~A~~aL~~l~~~  528 (644)
T 2z6h_A          489 --EAAEAIEAEGATAPLTELL-HSRNEGVATYAAAVLFRMSED  528 (644)
T ss_dssp             --HHHHHHHHTTCHHHHHHHT-TCSCHHHHHHHHHHHHHHTTT
T ss_pred             --HHHHHHHHcCChhHHHHHH-cCCCHHHHHHHHHHHHHHhcc
Confidence              4577899999999999999 599999999999999999865

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=7.6e-39  Score=347.06  Aligned_cols=411  Identities=16%  Similarity=0.169  Sum_probs=347.6

Q ss_pred             CCcHHHHHHHccCCHHHHHHHHHHHHHhcc-Cc-chhHHHHhhhH-HHHHHhcccCC-HHHHHHHHHHHHHhhcC-CCcH
Q 008257           36 GRLQPLLTQILEGPQETKLSLAAFLGDLAL-NS-DVKVLVARTVG-SCLINIMKSGN-MQAREAALKALNQISSC-EPSA  110 (572)
Q Consensus        36 g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~-~~-~~k~~i~~~g~-~~Lv~lL~s~~-~~~~~~A~~aL~~Ls~~-~~~~  110 (572)
                      ..++.|+..|.+++++.|..|+++|.++.. .. +.+..+.+.|+ |.|+++|++++ +.+|..|+++|.+|+.. ++++
T Consensus        74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~  153 (528)
T 4b8j_A           74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT  153 (528)
T ss_dssp             -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence            458999999999999999999999999866 33 56777777777 99999999887 99999999999999986 5678


Q ss_pred             HHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHH-hcCChhHH
Q 008257          111 KVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLI-SNTGPTIE  189 (572)
Q Consensus       111 ~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL-~~~~~~~q  189 (572)
                      ..+++.|+||+|+.+|.++     ++.+++.|+|+|+||+.......        ..+...|+++.|+.+| .+.++.++
T Consensus       154 ~~~~~~g~i~~L~~lL~~~-----~~~v~~~a~~aL~~l~~~~~~~~--------~~i~~~g~l~~Ll~lL~~~~~~~v~  220 (528)
T 4b8j_A          154 KVVIDHGAVPIFVKLLGSS-----SDDVREQAVWALGNVAGDSPKCR--------DLVLANGALLPLLAQLNEHTKLSML  220 (528)
T ss_dssp             HHHHHTTHHHHHHHHTTCS-----CHHHHHHHHHHHHHHHHTCHHHH--------HHHHHTTCHHHHHHTCCTTCCHHHH
T ss_pred             HHHHhCCcHHHHHHHhcCC-----CHHHHHHHHHHHHHHhCCChhhH--------HHHHHCCcHHHHHHHHhcCCCHHHH
Confidence            8889999999999999864     37999999999999997543211        2455678999999999 67889999


Q ss_pred             HHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhh
Q 008257          190 CKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRV  269 (572)
Q Consensus       190 ~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~l  269 (572)
                      ..++++|.+++......    ......|+++.|+.+|.+++++++..|+++|.+|+.+.+ +..+.+... |+++.|+.+
T Consensus       221 ~~a~~~L~~L~~~~~~~----~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~-~~~~~~~~~-g~v~~Lv~l  294 (528)
T 4b8j_A          221 RNATWTLSNFCRGKPQP----SFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTN-DKIQAVIEA-GVCPRLVEL  294 (528)
T ss_dssp             HHHHHHHHHHHCSSSCC----CHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCH-HHHHHHHHT-TCHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCC----cHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH-HHHHHHHHc-CHHHHHHHH
Confidence            99999999999874221    122358999999999999999999999999999997744 333455665 999999999


Q ss_pred             hccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCC
Q 008257          270 ISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDE  349 (572)
Q Consensus       270 L~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~  349 (572)
                      |.+++.  .++..|+++|++++.+++..++.+++.|++|.|+.+|.+.         ....+++.|+++|.+++.+   +
T Consensus       295 L~~~~~--~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~---------~~~~v~~~A~~~L~nl~~~---~  360 (528)
T 4b8j_A          295 LLHPSP--SVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQN---------LKKSIKKEACWTISNITAG---N  360 (528)
T ss_dssp             TTCSCH--HHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSC---------CCHHHHHHHHHHHHHHHTS---C
T ss_pred             HcCCCh--hHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCC---------CcHHHHHHHHHHHHHHHCC---C
Confidence            999885  8999999999999998888888999999999999999862         1456788999999999964   7


Q ss_pred             hHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccC
Q 008257          350 PDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRG  429 (572)
Q Consensus       350 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~  429 (572)
                      ++....+.+.|++|.|+++|.++ ++.+|..|+++|.+++.....                                   
T Consensus       361 ~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~~~-----------------------------------  404 (528)
T 4b8j_A          361 KDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSGGSH-----------------------------------  404 (528)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSCH-----------------------------------
T ss_pred             HHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCH-----------------------------------
Confidence            88888899999999999999998 999999999999999875210                                   


Q ss_pred             ccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccc--------hhhHHHHHhcCChHHHHHHHhhcC
Q 008257          430 LCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDI--------EQGVMVLCEAQGIKPILDVLLEKR  501 (572)
Q Consensus       430 ~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~--------~~~~~~i~~~g~i~~L~~lL~~~~  501 (572)
                          ....++++.|++++|+++|.+.+++++..|+.+|.+|+..++..        ......+.++||+..+..+. .|+
T Consensus       405 ----~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~-~~~  479 (528)
T 4b8j_A          405 ----DQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQ-SHD  479 (528)
T ss_dssp             ----HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGG-GCS
T ss_pred             ----HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHH-cCC
Confidence                12234678999999999999999999999999999999754321        12577899999999999887 699


Q ss_pred             CHHHHHHHHHHHHHHHcch
Q 008257          502 TENLQRRAVWVVERILRTD  520 (572)
Q Consensus       502 ~~~~~~~a~~~l~~l~~~~  520 (572)
                      ++++++.|.+++.+++..+
T Consensus       480 ~~~v~~~a~~il~~~~~~e  498 (528)
T 4b8j_A          480 NNEIYEKAVKILEAYWMDE  498 (528)
T ss_dssp             SHHHHHHHHHHHHHHCC--
T ss_pred             CHHHHHHHHHHHHHHCCCc
Confidence            9999999999999999663

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=100.00  E-value=9.1e-39  Score=360.43  Aligned_cols=472  Identities=14%  Similarity=0.156  Sum_probs=371.5

Q ss_pred             CCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccC-cchhHHHHhhhH-HHHHH
Q 008257            6 SENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALN-SDVKVLVARTVG-SCLIN   83 (572)
Q Consensus         6 s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~-~~~k~~i~~~g~-~~Lv~   83 (572)
                      ++|+.+++.|+.+|.+|+..++++..+.+.|++++|+.+|+++++.+|..|+++|.+++.+ ++.+..+.+.|+ +.|++
T Consensus       204 ~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~  283 (780)
T 2z6g_A          204 TNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVA  283 (780)
T ss_dssp             CCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHH
Confidence            4589999999999999999999999999999999999999999999999999999999984 677778877777 99999


Q ss_pred             hcccCCHHHHHHHHHHHHHhhc-CCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccC
Q 008257           84 IMKSGNMQAREAALKALNQISS-CEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVG  162 (572)
Q Consensus        84 lL~s~~~~~~~~A~~aL~~Ls~-~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~  162 (572)
                      +|++++..++..|+.+|.+|+. +++++..+++.|+++.|+++|++..    +...++.++.+|.+|+.+...       
T Consensus       284 lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~----~~~~~~~a~~aL~~Ls~~~~~-------  352 (780)
T 2z6g_A          284 LLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT----YEKLLWTTSRVLKVLSVCSSN-------  352 (780)
T ss_dssp             GGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCC----CHHHHHHHHHHHHHHHTSTTH-------
T ss_pred             HHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCC----HHHHHHHHHHHHHHhhcChHH-------
Confidence            9999999999999999999996 4677888899999999999998642    356788899999999975321       


Q ss_pred             CCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHH
Q 008257          163 PDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQ  242 (572)
Q Consensus       163 ~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~  242 (572)
                        ...+...|+++.|+.++.+++++++..++++|.+++......      ....++++.|+.+|.+++++++..|+++|.
T Consensus       353 --~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~------~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~  424 (780)
T 2z6g_A          353 --KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ------EGMEGLLGTLVQLLGSDDINVVTCAAGILS  424 (780)
T ss_dssp             --HHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC------SCCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             --HHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh------hhhhhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence              235677899999999999999999999999999999765321      012468999999999999999999999999


Q ss_pred             HcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHH---HHHHHHhCCChHHHHHHHhhhcc
Q 008257          243 NLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLG---LTRQMLDEGAFGLIFSRVKSIQL  319 (572)
Q Consensus       243 ~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~---~~~~l~~~g~l~~Lv~lL~~~~~  319 (572)
                      +|+.+. .+..+.+... |+++.|+++|...++...++..|+++|++|+..+.+   .+..+.+.|++|.|+.+|.+.. 
T Consensus       425 ~L~~~~-~~~~~~i~~~-g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~-  501 (780)
T 2z6g_A          425 NLTCNN-YKNKMMVCQV-GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPS-  501 (780)
T ss_dssp             HHTSSC-HHHHHHHHTT-THHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTC-
T ss_pred             HHHhCC-HHHHHHHHHC-CCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCC-
Confidence            999874 3444566666 999999999987443237999999999999875443   3457889999999999998621 


Q ss_pred             CCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHH--hhhhccccCC
Q 008257          320 GETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALEN--LSLESKNLTK  397 (572)
Q Consensus       320 ~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~--ls~~~~~~~~  397 (572)
                              ...+++.++++|.+++.    ++..+..+.+.|++|.|+++|.++ +..+|+.|+|++.|  +.......  
T Consensus       502 --------~~~v~~~A~~aL~nLa~----~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~aa~al~nq~~~~~~~~~--  566 (780)
T 2z6g_A          502 --------HWPLIKATVGLIRNLAL----CPANHAPLREQGAIPRLVQLLVRA-HQDTQRRTSMGGTQQQFVEGVRME--  566 (780)
T ss_dssp             --------CHHHHHHHHHHHHHHHS----SHHHHHHHHHTTHHHHHHHHHHHH-HHHHHHTTC------CCSTTCCHH--
T ss_pred             --------hHHHHHHHHHHHHHHhc----CHHHHHHHHHCCCHHHHHHHHHhc-chhHHHHHhhccccchhhcccChH--
Confidence                    24678899999999994    677778899999999999999987 77788888887765  21100000  


Q ss_pred             CCCCCCCCCCccccccccCCCccccccccccCcc-CccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCcc
Q 008257          398 LPELPPSGFCASIFPCFSKQPVITGLCRLHRGLC-SLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVD  476 (572)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~-~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~  476 (572)
                                 .+         ....|.+...++ +..+...+++.|+|++|+++|.+.++.++..|+.+|++|+.+.  
T Consensus       567 -----------~v---------~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~--  624 (780)
T 2z6g_A          567 -----------EI---------VEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK--  624 (780)
T ss_dssp             -----------HH---------HHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSH--
T ss_pred             -----------HH---------HHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCH--
Confidence                       00         000000000001 2244556789999999999999999999999999999998653  


Q ss_pred             chhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcchh--hhhhhcCCCCchHHHHHHhhcCC
Q 008257          477 IEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDD--IAYEVSGDPNVSTALVDAFQHAD  544 (572)
Q Consensus       477 ~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~~~--~~~~~~~~~~~~~~Lv~ll~~~~  544 (572)
                        .....|.++||++.|++++ .++++.+++.|+++|.++..+..  ++..+    ++ ..+..++++.+
T Consensus       625 --~~~~~i~~~g~i~~L~~Ll-~~~~~~Vr~~A~~aL~~l~~~~~~~~~~~l----~~-~ll~~l~~~~~  686 (780)
T 2z6g_A          625 --EAAEAIEAEGATAPLTELL-HSRNEGVATYAAAVLFRMSEDKPQDYKKRL----SV-ELTSSLFRTEP  686 (780)
T ss_dssp             --HHHHHHHHTTCHHHHHHGG-GCSCHHHHHHHHHHHHHHHTTSCTTHHHHH----HH-HHHHHC-----
T ss_pred             --HHHHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCChHhhhccc----cH-HHHHHHHhCCC
Confidence              4578899999999999999 59999999999999999996632  33222    23 35666666655

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=3e-39  Score=338.31  Aligned_cols=363  Identities=15%  Similarity=0.177  Sum_probs=289.1

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHcc------------CCHHHHHHHHHHHHHhcc-Cc
Q 008257            1 MTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILE------------GPQETKLSLAAFLGDLAL-NS   67 (572)
Q Consensus         1 ~~~~~s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~------------~~~~~~~~aa~~L~~l~~-~~   67 (572)
                      ++|+.|.|+..   ..+.|..++.+++.+..++++|++|.|+++|+.            +++++|.+|+++|.|++. .+
T Consensus        38 ~~~~~~~~~~~---~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~  114 (458)
T 3nmz_A           38 LSMLGTHDKDD---MSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQP  114 (458)
T ss_dssp             -------CCHH---HHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHhcCCCHHH---HHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCc
Confidence            36788888883   667888889888888999999999999999996            347999999999999998 55


Q ss_pred             chhHHHHhhhH-----------HHHHHhcccCC--HH-----H-------HHHHHHHHHHhhcCCCcHHHHHHcCChHHH
Q 008257           68 DVKVLVARTVG-----------SCLINIMKSGN--MQ-----A-------REAALKALNQISSCEPSAKVLIHAGILPPL  122 (572)
Q Consensus        68 ~~k~~i~~~g~-----------~~Lv~lL~s~~--~~-----~-------~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~L  122 (572)
                      +.+....+.|+           +.+++++.+.+  .+     +       +..|+++|.|++.++++|+.|++.|++++|
T Consensus       115 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~L  194 (458)
T 3nmz_A          115 DDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAI  194 (458)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHH
Confidence            55554444333           45667777542  11     3       349999999999999999999999999999


Q ss_pred             HHHHhccC------CCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccc-hhhhHHHHHHHHhcCChhHHHHHHHH
Q 008257          123 VKDLFTVG------SNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLV-SEDIVHNLLHLISNTGPTIECKLLQV  195 (572)
Q Consensus       123 v~lL~s~~------~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~-~~~~i~~Lv~lL~~~~~~~q~~a~~a  195 (572)
                      +++|.+..      .+..++.++++|+|+|.||+.++....        ..+. ..|+||.|+++|+++++++|..++++
T Consensus       195 v~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k--------~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~a  266 (458)
T 3nmz_A          195 AELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANK--------ATLCSMKGCMRALVAQLKSESEDLQQVIASV  266 (458)
T ss_dssp             HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHH--------HHHHHCHHHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred             HHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccH--------HHHHHcCCcHHHHHHHHhCCCHHHHHHHHHH
Confidence            99995310      001126789999999999997643211        1232 46789999999999999999999999


Q ss_pred             HHHccCCCCccHHHHHHHHhcCChHHHHHHh-cCCCHHHHHHHHHHHHHcCCCCChhHHHHHh-cccCChhhHHhhhccC
Q 008257          196 LVGLTSSPTTVLSVVSAIKSSGATISLVQFV-EAPQNDLRLASIELIQNLSPHMGHELADALR-GAVGQLGSLIRVISEN  273 (572)
Q Consensus       196 L~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~-~~~g~l~~Lv~lL~~~  273 (572)
                      |.+|+...+  +..+..|.+.||||+|+++| +++++.+++.|+.+|++|+.+.. +....+. .. |+++.|+++|.++
T Consensus       267 L~nLs~~~~--~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~-~nk~~I~~~~-Gal~~Lv~LL~~~  342 (458)
T 3nmz_A          267 LRNLSWRAD--VNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT-ENKADICAVD-GALAFLVGTLTYR  342 (458)
T ss_dssp             HHHHTSSCC--HHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCH-HHHHHHHHST-THHHHHHHHTTCC
T ss_pred             HHHHhcCCC--HHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCH-HHHHHHHHhc-CcHHHHHHHhcCC
Confidence            999998532  35788999999999999975 56788999999999999997422 2234565 45 9999999999987


Q ss_pred             CCC--hHHHHHHHHHHhcCCC---CcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCC
Q 008257          274 VGI--SKEQAAAVGLLAELPE---RDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSD  348 (572)
Q Consensus       274 ~~~--~~~~~~A~~~L~~L~~---~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~  348 (572)
                      ++.  .+++..|+++|+||+.   .+++.++.++++|++|+|+.+|++.          ...+++.|+++|++++..   
T Consensus       343 ~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~----------~~~v~~~A~~aL~nLa~~---  409 (458)
T 3nmz_A          343 SQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH----------SLTIVSNACGTLWNLSAR---  409 (458)
T ss_dssp             CSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCS----------CHHHHHHHHHHHHHHHSS---
T ss_pred             CCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCC----------ChHHHHHHHHHHHHHHcC---
Confidence            641  1588999999999985   5778889999999999999999862          355789999999999964   


Q ss_pred             ChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhc
Q 008257          349 EPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLES  392 (572)
Q Consensus       349 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~  392 (572)
                      ++++++.+.+.|++|+|+++|+++ ++.+|+.|+++|.||+.+.
T Consensus       410 ~~~~~~~i~~~G~I~~Lv~LL~s~-~~~v~~~Aa~AL~nL~~~~  452 (458)
T 3nmz_A          410 NPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMANR  452 (458)
T ss_dssp             CHHHHHHHHHHTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTCC
T ss_pred             CHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCC
Confidence            899999999999999999999998 9999999999999998754

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=1.5e-37  Score=336.93  Aligned_cols=415  Identities=16%  Similarity=0.182  Sum_probs=347.8

Q ss_pred             HcCCcHHHHHHHccCCHHHHHHHHHHHHHhccC--cchhHHHHhhhH-HHHHHhcccC-CHHHHHHHHHHHHHhhcCC-C
Q 008257           34 ENGRLQPLLTQILEGPQETKLSLAAFLGDLALN--SDVKVLVARTVG-SCLINIMKSG-NMQAREAALKALNQISSCE-P  108 (572)
Q Consensus        34 ~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~--~~~k~~i~~~g~-~~Lv~lL~s~-~~~~~~~A~~aL~~Ls~~~-~  108 (572)
                      ..+.++.|+..|+++++++|..|+.+|.++...  +..+..+.+.|+ |.|+++|+++ ++.+|..|+++|.+++... +
T Consensus        85 ~~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~  164 (530)
T 1wa5_B           85 LQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA  164 (530)
T ss_dssp             --CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence            457799999999999999999999999998653  455666777777 9999999997 8999999999999999864 5


Q ss_pred             cHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhH
Q 008257          109 SAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTI  188 (572)
Q Consensus       109 ~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~  188 (572)
                      ++..+++.|++|+|+++|.++     ++.+++.|+|+|+||+.......        ..+...|+++.|+.++.+.++++
T Consensus       165 ~~~~~~~~g~i~~Lv~lL~~~-----~~~vr~~A~~aL~~l~~~~~~~~--------~~~~~~~~l~~L~~ll~~~~~~v  231 (530)
T 1wa5_B          165 QTKVVVDADAVPLFIQLLYTG-----SVEVKEQAIWALGNVAGDSTDYR--------DYVLQCNAMEPILGLFNSNKPSL  231 (530)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHC-----CHHHHHHHHHHHHHHHTTCHHHH--------HHHHHTTCHHHHHHGGGSCCHHH
T ss_pred             HHHHHHHCCCHHHHHHHHcCC-----CHHHHHHHHHHHHHHhCCCccch--------HHHHHcCcHHHHHHHhccCCHHH
Confidence            677888999999999999874     38999999999999997532211        24556789999999999999999


Q ss_pred             HHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHh
Q 008257          189 ECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIR  268 (572)
Q Consensus       189 q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~  268 (572)
                      +..++++|.+++......   .......++++.|+.+|.++++.++..|+++|.+|+.+.+ +..+.+... |+++.|+.
T Consensus       232 ~~~a~~~L~~L~~~~~~~---~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~-~~~~~~~~~-~~v~~Lv~  306 (530)
T 1wa5_B          232 IRTATWTLSNLCRGKKPQ---PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQ-EAIQAVIDV-RIPKRLVE  306 (530)
T ss_dssp             HHHHHHHHHHHHCCSSSC---CCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCH-HHHHHHHHT-TCHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCC---CcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCH-HHHHHHHhc-CcHHHHHH
Confidence            999999999999764211   1233458999999999999999999999999999997743 333455555 89999999


Q ss_pred             hhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCC
Q 008257          269 VISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSD  348 (572)
Q Consensus       269 lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~  348 (572)
                      +|.+++.  .++..|+++|++++.+++...+.+++.|++|.|+.+|.+.          ...+++.++++|.+++.+   
T Consensus       307 lL~~~~~--~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~----------~~~vr~~A~~aL~~l~~~---  371 (530)
T 1wa5_B          307 LLSHEST--LVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP----------KENIKKEACWTISNITAG---  371 (530)
T ss_dssp             GGGCSCH--HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS----------CHHHHHHHHHHHHHHTTS---
T ss_pred             HHCCCCh--hhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCC----------CHHHHHHHHHHHHHHHcC---
Confidence            9998774  8999999999999988888888899999999999999862          456788999999999964   


Q ss_pred             ChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCcccccccccc
Q 008257          349 EPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHR  428 (572)
Q Consensus       349 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~  428 (572)
                      +++..+.+.+.|++|.|+++|.++ ++.+|..|+++|++++......                                 
T Consensus       372 ~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~---------------------------------  417 (530)
T 1wa5_B          372 NTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQR---------------------------------  417 (530)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTC---------------------------------
T ss_pred             CHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCc---------------------------------
Confidence            778888888999999999999998 8999999999999998643110                                 


Q ss_pred             CccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccc--------hhhHHHHHhcCChHHHHHHHhhc
Q 008257          429 GLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDI--------EQGVMVLCEAQGIKPILDVLLEK  500 (572)
Q Consensus       429 ~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~--------~~~~~~i~~~g~i~~L~~lL~~~  500 (572)
                          .+...++++.|++++|+.+|.+.++.++..|+.+|.+++...+..        ......+.++||++.|..++ .+
T Consensus       418 ----~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~-~~  492 (530)
T 1wa5_B          418 ----PDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQ-QN  492 (530)
T ss_dssp             ----THHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGG-GC
T ss_pred             ----HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHH-cC
Confidence                012234678999999999999999999999999999999754321        23467799999999999988 69


Q ss_pred             CCHHHHHHHHHHHHHHHcch
Q 008257          501 RTENLQRRAVWVVERILRTD  520 (572)
Q Consensus       501 ~~~~~~~~a~~~l~~l~~~~  520 (572)
                      +++.+++.|.++|.+++..+
T Consensus       493 ~~~~v~~~a~~il~~~~~~~  512 (530)
T 1wa5_B          493 ENDKIYEKAYKIIETYFGEE  512 (530)
T ss_dssp             SCHHHHHHHHHHHHHHSSSC
T ss_pred             CCHHHHHHHHHHHHHHCCcc
Confidence            99999999999999999763

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=8.7e-39  Score=341.86  Aligned_cols=387  Identities=14%  Similarity=0.135  Sum_probs=301.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHhhcc-CcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhcc--CcchhHHHHhhhH
Q 008257            2 TSSKSENLLTVEKAEKTLANLEK-CENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLAL--NSDVKVLVARTVG   78 (572)
Q Consensus         2 ~~~~s~~~~~~~~A~~~L~~L~~-~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~--~~~~k~~i~~~g~   78 (572)
                      .+|+|+|+.++..|+.+|.+|+. +++++..+++.|+|++||.+|++++.++|..|+++|.+|+.  ++++|..|.+.|+
T Consensus        55 ~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~Ga  134 (584)
T 3l6x_A           55 AMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDG  134 (584)
T ss_dssp             HHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTH
T ss_pred             HHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCC
Confidence            36789999999999999999996 88999999999999999999999999999999999999998  3789999999988


Q ss_pred             -HHHHHhccc-CCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCC
Q 008257           79 -SCLINIMKS-GNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDF  156 (572)
Q Consensus        79 -~~Lv~lL~s-~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~  156 (572)
                       |+||++|++ .+.++|+.|+++|++|+.+++++..|++ |+||+|+++|..+.     ......      ....     
T Consensus       135 Ip~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~-----sg~~~~------~~~~-----  197 (584)
T 3l6x_A          135 VPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPH-----SGWERE------PNED-----  197 (584)
T ss_dssp             HHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHH-----HCCC-----------------
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhccc-----cccccc------cccc-----
Confidence             999999997 6789999999999999999999999995 67999999884321     000000      0000     


Q ss_pred             CccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCC-hHHHHHHhcC------C
Q 008257          157 DSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGA-TISLVQFVEA------P  229 (572)
Q Consensus       157 ~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~-i~~Lv~lL~~------~  229 (572)
                                           -++..+.+++++.+++++|.+|+...   ++.|..|++++| ++.||.++++      .
T Consensus       198 ---------------------~k~~~~~d~~V~~nAa~~L~NLs~~~---~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~  253 (584)
T 3l6x_A          198 ---------------------CKPRHIEWESVLTNTAGCLRNVSSER---SEARRKLRECDGLVDALIFIVQAEIGQKDS  253 (584)
T ss_dssp             -------------------------CCCCHHHHHHHHHHHHHHTSSC---HHHHHHHHHSTTHHHHHHHHHHHHHHTTCC
T ss_pred             ---------------------ccccccccHHHHHHHHHHHHHHhcCC---HHHHHHHHHcCCcHHHHHHHHHHhhcccCc
Confidence                                 00112346788888888888888765   346888888765 5699999975      4


Q ss_pred             CHHHHHHHHHHHHHcCCCCChhH------H------------------HHHhcccCChhhHHhhhccCCCChHHHHHHHH
Q 008257          230 QNDLRLASIELIQNLSPHMGHEL------A------------------DALRGAVGQLGSLIRVISENVGISKEQAAAVG  285 (572)
Q Consensus       230 ~~~v~~~a~~~L~~Ls~~~~~~~------~------------------~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~  285 (572)
                      +...+++|+++|+||+.+...++      .                  +.+... ++++.|+.+|..... ..+++.|++
T Consensus       254 ~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~-~~v~~Ll~LL~~s~~-~~v~E~Aa~  331 (584)
T 3l6x_A          254 DSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQP-EVVRIYISLLKESKT-PAILEASAG  331 (584)
T ss_dssp             SCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSH-HHHHHHHHHHHHCCC-HHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcc-cHHHHHHHHHccCCC-HHHHHHHHH
Confidence            56799999999999986521111      0                  111222 456678899976543 489999999


Q ss_pred             HHhcCCCCc----HHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCc
Q 008257          286 LLAELPERD----LGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNL  361 (572)
Q Consensus       286 ~L~~L~~~~----~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~  361 (572)
                      +|+||+.++    ..++..+.++|++|.|+.+|.+          ....+++.++++|.+++.    ++.++..| +.|+
T Consensus       332 AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s----------~~~~v~~~A~~aL~nLs~----~~~~~~~I-~~g~  396 (584)
T 3l6x_A          332 AIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTN----------EHERVVKAASGALRNLAV----DARNKELI-GKHA  396 (584)
T ss_dssp             HHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGC----------SCHHHHHHHHHHHHHHHT----TCSCHHHH-HHHH
T ss_pred             HHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcC----------CCHHHHHHHHHHHHHHhC----ChhHHHHH-HhCC
Confidence            999998754    2344566678999999999986          245789999999999994    66677666 7899


Q ss_pred             hHHHHHHhccCC-------cHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCcc
Q 008257          362 AALFIELLQSNG-------LDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLK  434 (572)
Q Consensus       362 i~~Lv~lL~~~~-------~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~  434 (572)
                      +|.||++|.++.       +++++..|+++|.|+...+.                                        +
T Consensus       397 ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~----------------------------------------~  436 (584)
T 3l6x_A          397 IPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENL----------------------------------------E  436 (584)
T ss_dssp             HHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCH----------------------------------------H
T ss_pred             HHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCH----------------------------------------H
Confidence            999999999862       36788899999999975332                                        2


Q ss_pred             chhhhhhccchHHHHHhhcCC--CHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChH
Q 008257          435 ETFCLLEGHAVEKLIALLDHT--NEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIK  491 (572)
Q Consensus       435 ~~~~l~~~g~i~~Lv~lL~~~--~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~  491 (572)
                      ++..++++|+|++|++||++.  +++++++|..+|++++.+.    +.+..+.+ .|+.
T Consensus       437 ~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~----elr~~~kk-~G~~  490 (584)
T 3l6x_A          437 AAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYK----ELRKPLEK-EGWK  490 (584)
T ss_dssp             HHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSH----HHHHHHHT-TTCC
T ss_pred             HHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCH----HHHHHHHH-cCCC
Confidence            344578999999999999986  8999999999999999864    34455555 4443

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=3.1e-36  Score=326.49  Aligned_cols=410  Identities=14%  Similarity=0.159  Sum_probs=344.6

Q ss_pred             CCCCCCHHHHHHHHHHHHhhccC--cchHHHHHHcCCcHHHHHHHccCC-HHHHHHHHHHHHHhcc-CcchhHHHHhhhH
Q 008257            3 SSKSENLLTVEKAEKTLANLEKC--ENNVRQMAENGRLQPLLTQILEGP-QETKLSLAAFLGDLAL-NSDVKVLVARTVG   78 (572)
Q Consensus         3 ~~~s~~~~~~~~A~~~L~~L~~~--~~n~~~i~~~g~i~~Lv~~L~~~~-~~~~~~aa~~L~~l~~-~~~~k~~i~~~g~   78 (572)
                      +++|+|+..+..|+..|.++...  +.++..+++.|++++|+.+|++++ +.+|..|+++|.+++. +++++..+.+.|+
T Consensus        82 ~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~  161 (528)
T 4b8j_A           82 GVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGA  161 (528)
T ss_dssp             HHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTH
T ss_pred             HHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCc
Confidence            46789999999999999999653  367899999999999999999887 9999999999999998 4678888888888


Q ss_pred             -HHHHHhcccCCHHHHHHHHHHHHHhhcCC-CcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCC
Q 008257           79 -SCLINIMKSGNMQAREAALKALNQISSCE-PSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDF  156 (572)
Q Consensus        79 -~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~-~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~  156 (572)
                       |+|+.+|+++++.+++.|+++|.+|+.+. .++..+++.|++|+|+.+|...    .+..++..|+|+|.||+.+....
T Consensus       162 i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~----~~~~v~~~a~~~L~~L~~~~~~~  237 (528)
T 4b8j_A          162 VPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEH----TKLSMLRNATWTLSNFCRGKPQP  237 (528)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTT----CCHHHHHHHHHHHHHHHCSSSCC
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcC----CCHHHHHHHHHHHHHHHcCCCCC
Confidence             99999999999999999999999999864 4578888999999999999532    24789999999999999864221


Q ss_pred             CccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHH
Q 008257          157 DSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLA  236 (572)
Q Consensus       157 ~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~  236 (572)
                               ......++++.|+++|.+++++++..++++|.+++..+.   .....+.+.|+++.|+.+|.++++.++..
T Consensus       238 ---------~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~---~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~  305 (528)
T 4b8j_A          238 ---------SFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTN---DKIQAVIEAGVCPRLVELLLHPSPSVLIP  305 (528)
T ss_dssp             ---------CHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCH---HHHHHHHHTTCHHHHHHHTTCSCHHHHHH
T ss_pred             ---------cHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH---HHHHHHHHcCHHHHHHHHHcCCChhHHHH
Confidence                     123457899999999999999999999999999998753   34567788999999999999999999999


Q ss_pred             HHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccC-CCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHh
Q 008257          237 SIELIQNLSPHMGHELADALRGAVGQLGSLIRVISEN-VGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVK  315 (572)
Q Consensus       237 a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~-~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~  315 (572)
                      |+++|.+++.+.+ ...+.+... |+++.|+.+|.++ +.  .++..|+++|+|++.++++..+.+++.|++|.|+.+|.
T Consensus       306 a~~~L~nl~~~~~-~~~~~~~~~-~~l~~L~~lL~~~~~~--~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~  381 (528)
T 4b8j_A          306 ALRTVGNIVTGDD-AQTQCIIDH-QALPCLLSLLTQNLKK--SIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQ  381 (528)
T ss_dssp             HHHHHHHHTTSCH-HHHHHHHTT-THHHHHHHHHHSCCCH--HHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCH-HHHHHHHHh-hhHHHHHHHHcCCCcH--HHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHh
Confidence            9999999998743 333456665 9999999999988 54  89999999999999878888889999999999999998


Q ss_pred             hhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhcccc
Q 008257          316 SIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNL  395 (572)
Q Consensus       316 ~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~  395 (572)
                      +.          +..+++.++++|.+++..  .+++....+.+.|++++|+++|.++ ++.++..++++|.++.......
T Consensus       382 ~~----------~~~v~~~a~~aL~nl~~~--~~~~~~~~l~~~~~i~~L~~lL~~~-d~~v~~~al~~L~~l~~~~~~~  448 (528)
T 4b8j_A          382 TA----------EFDIKKEAAWAISNATSG--GSHDQIKYLVSEGCIKPLCDLLICP-DIRIVTVCLEGLENILKVGETD  448 (528)
T ss_dssp             HS----------CHHHHHHHHHHHHHHHHH--SCHHHHHHHHHTTCHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cC----------CHHHHHHHHHHHHHHHcC--CCHHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHh
Confidence            62          456789999999999865  4788999999999999999999998 9999999999999997654331


Q ss_pred             CCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcC
Q 008257          396 TKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDG  474 (572)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~  474 (572)
                      ......+.                             ..-...+.+.|+++.|..++++.++++++.|..+|.+++..+
T Consensus       449 ~~~~~~~~-----------------------------~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~e  498 (528)
T 4b8j_A          449 KTLAAGDV-----------------------------NVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDE  498 (528)
T ss_dssp             HHHHTCSC-----------------------------CHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC--
T ss_pred             hhcccccc-----------------------------cHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence            10000000                             001113568999999999999999999999999999998643

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=1.4e-37  Score=325.72  Aligned_cols=366  Identities=14%  Similarity=0.164  Sum_probs=284.9

Q ss_pred             HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCC-------CCCcchHHHHHHHHHHHHh
Q 008257           79 SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSN-------HLPMRLKEVSATILANVVN  151 (572)
Q Consensus        79 ~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~-------~~~~~~~~~aa~~L~nla~  151 (572)
                      +.|+.++.+.+++   ...+.|..++.+++.+..+++.|++|.||++|...+.+       ..+++++.+|+|+|.||+.
T Consensus        35 ~~l~~~~~~~~~~---~~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~  111 (458)
T 3nmz_A           35 YSLLSMLGTHDKD---DMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIH  111 (458)
T ss_dssp             ----------CCH---HHHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCHH---HHHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHc
Confidence            7788888877766   37888999999999889999999999999999863210       0236999999999999998


Q ss_pred             cCCCCCccccCCCccccchhhhH----------HHHHHHHhcCC--hh-----H-------HHHHHHHHHHccCCCCccH
Q 008257          152 SGHDFDSITVGPDNQTLVSEDIV----------HNLLHLISNTG--PT-----I-------ECKLLQVLVGLTSSPTTVL  207 (572)
Q Consensus       152 ~~~~~~~~~~~~~~~~l~~~~~i----------~~Lv~lL~~~~--~~-----~-------q~~a~~aL~~l~~~~~~~~  207 (572)
                      ..++...        .....+++          +.+++++.+.+  .+     +       +.+|+|+|.+++.++    
T Consensus       112 ~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~----  179 (458)
T 3nmz_A          112 SQPDDKR--------GRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDE----  179 (458)
T ss_dssp             HSCSCHH--------HHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSH----
T ss_pred             cCcchhH--------HHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCCH----
Confidence            7654322        12233444          55677776542  22     3       339999999997763    


Q ss_pred             HHHHHHHhcCChHHHHHHhcC-----------CCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCC
Q 008257          208 SVVSAIKSSGATISLVQFVEA-----------PQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGI  276 (572)
Q Consensus       208 ~~~~~i~~~g~i~~Lv~lL~~-----------~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~  276 (572)
                      ++|..|.+.|++++|+.+|..           .++.++++|+|+|.+|+.+.+ .....+....|+||.|+++|.+++. 
T Consensus       180 e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~-~~k~~i~~~~GaIp~LV~LL~s~~~-  257 (458)
T 3nmz_A          180 EHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDV-ANKATLCSMKGCMRALVAQLKSESE-  257 (458)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHCHHHHHHHHHGGGCSCH-
T ss_pred             HHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCc-ccHHHHHHcCCcHHHHHHHHhCCCH-
Confidence            679999999999999999952           236789999999999997743 3333454332669999999998875 


Q ss_pred             hHHHHHHHHHHhcCCCC-cHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHH
Q 008257          277 SKEQAAAVGLLAELPER-DLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIAL  355 (572)
Q Consensus       277 ~~~~~~A~~~L~~L~~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~  355 (572)
                       +++..|+++|+||+.. ++++++.+++.|++|+|+.+|...         ....+++.++++|++++..   +.+++..
T Consensus       258 -~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s---------~~~~v~~~A~~aL~nLs~~---~~~nk~~  324 (458)
T 3nmz_A          258 -DLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEV---------KKESTLKSVLSALWNLSAH---CTENKAD  324 (458)
T ss_dssp             -HHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTC---------CSHHHHHHHHHHHHHHHHH---CHHHHHH
T ss_pred             -HHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcC---------CCHHHHHHHHHHHHHHccC---CHHHHHH
Confidence             8999999999999985 677889999999999999987541         1456789999999999953   5667777


Q ss_pred             HH-HcCchHHHHHHhccCCcH----HHHHHHHHHHHHhhhh---ccccCCCCCCCCCCCCccccccccCCCccccccccc
Q 008257          356 CC-EHNLAALFIELLQSNGLD----KVQMVSATALENLSLE---SKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLH  427 (572)
Q Consensus       356 i~-~~g~i~~Lv~lL~~~~~~----~vk~~Aa~aL~~ls~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~  427 (572)
                      +. ..|++|+|+++|.++ ++    .+++.|+++|.|++..   ..                                  
T Consensus       325 I~~~~Gal~~Lv~LL~~~-~~~~~~~v~~~A~~aL~nLs~~~a~~~----------------------------------  369 (458)
T 3nmz_A          325 ICAVDGALAFLVGTLTYR-SQTNTLAIIESGGGILRNVSSLIATNE----------------------------------  369 (458)
T ss_dssp             HHHSTTHHHHHHHHTTCC-CSSSTTHHHHHHHHHHHHHHHHHTTCH----------------------------------
T ss_pred             HHHhcCcHHHHHHHhcCC-CCcchHHHHHHHHHHHHHHHhcccCCH----------------------------------
Confidence            76 799999999999987 43    5999999999999851   11                                  


Q ss_pred             cCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHH
Q 008257          428 RGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQR  507 (572)
Q Consensus       428 ~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~  507 (572)
                            .+...++++|+|++||++|++++.++++.|+++|++|+....   +....|.++|+|++|+++| .++++.+++
T Consensus       370 ------~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~---~~~~~i~~~G~I~~Lv~LL-~s~~~~v~~  439 (458)
T 3nmz_A          370 ------DHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNP---KDQEALWDMGAVSMLKNLI-HSKHKMIAM  439 (458)
T ss_dssp             ------HHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCH---HHHHHHHHHTHHHHHHTTT-TCSSHHHHH
T ss_pred             ------HHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCH---HHHHHHHHCCCHHHHHHHH-hCCCHHHHH
Confidence                  122347799999999999999999999999999999995432   4578899999999999999 589999999


Q ss_pred             HHHHHHHHHHcc
Q 008257          508 RAVWVVERILRT  519 (572)
Q Consensus       508 ~a~~~l~~l~~~  519 (572)
                      .|+++|.+++.+
T Consensus       440 ~Aa~AL~nL~~~  451 (458)
T 3nmz_A          440 GSAAALRNLMAN  451 (458)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHHcC
Confidence            999999999965

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=1.3e-35  Score=321.67  Aligned_cols=411  Identities=13%  Similarity=0.143  Sum_probs=344.2

Q ss_pred             CCCCCCHHHHHHHHHHHHhhccC--cchHHHHHHcCCcHHHHHHHccC-CHHHHHHHHHHHHHhcc-CcchhHHHHhhhH
Q 008257            3 SSKSENLLTVEKAEKTLANLEKC--ENNVRQMAENGRLQPLLTQILEG-PQETKLSLAAFLGDLAL-NSDVKVLVARTVG   78 (572)
Q Consensus         3 ~~~s~~~~~~~~A~~~L~~L~~~--~~n~~~i~~~g~i~~Lv~~L~~~-~~~~~~~aa~~L~~l~~-~~~~k~~i~~~g~   78 (572)
                      +++|+|+..+..|+..|.++...  +.++..+++.|+++.|+.+|.++ ++.+|..|+++|.+++. +++.+..+.+.|+
T Consensus        95 ~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~  174 (530)
T 1wa5_B           95 QLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADA  174 (530)
T ss_dssp             HHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTC
T ss_pred             HHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCC
Confidence            46789999999999999999653  56778899999999999999997 89999999999999998 4567777777777


Q ss_pred             -HHHHHhcccCCHHHHHHHHHHHHHhhcCC-CcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCC
Q 008257           79 -SCLINIMKSGNMQAREAALKALNQISSCE-PSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDF  156 (572)
Q Consensus        79 -~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~-~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~  156 (572)
                       |.|+++|+++++++++.|+++|.+|+.+. +++..+++.|++|+|+++|.+.     +..++..|+|+|.+|+.+....
T Consensus       175 i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-----~~~v~~~a~~~L~~L~~~~~~~  249 (530)
T 1wa5_B          175 VPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN-----KPSLIRTATWTLSNLCRGKKPQ  249 (530)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSC-----CHHHHHHHHHHHHHHHCCSSSC
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccC-----CHHHHHHHHHHHHHHhCCCCCC
Confidence             99999999999999999999999999874 5678888999999999999863     3789999999999999764211


Q ss_pred             CccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHH
Q 008257          157 DSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLA  236 (572)
Q Consensus       157 ~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~  236 (572)
                      .        ......++++.|+.+|.+++++++..++++|.+++....   ..+..+.+.|+++.|+.+|.++++.++..
T Consensus       250 ~--------~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~---~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~  318 (530)
T 1wa5_B          250 P--------DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQ---EAIQAVIDVRIPKRLVELLSHESTLVQTP  318 (530)
T ss_dssp             C--------CHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCH---HHHHHHHHTTCHHHHHHGGGCSCHHHHHH
T ss_pred             C--------cHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCH---HHHHHHHhcCcHHHHHHHHCCCChhhHHH
Confidence            1        234557899999999999999999999999999998753   45667788999999999999999999999


Q ss_pred             HHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhh
Q 008257          237 SIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKS  316 (572)
Q Consensus       237 a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~  316 (572)
                      |+++|.+++.+.+ ...+.+... |+++.|+.+|.+++.  .++..|+++|++++.++++..+.+++.|++|.|+.+|.+
T Consensus       319 a~~~L~~l~~~~~-~~~~~~~~~-~~l~~L~~lL~~~~~--~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~  394 (530)
T 1wa5_B          319 ALRAVGNIVTGND-LQTQVVINA-GVLPALRLLLSSPKE--NIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEV  394 (530)
T ss_dssp             HHHHHHHHTTSCH-HHHHHHHHT-THHHHHHHHTTCSCH--HHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCH-HHHHHHHHc-chHHHHHHHHcCCCH--HHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhc
Confidence            9999999997743 333455555 899999999998874  899999999999998777877889999999999999976


Q ss_pred             hccCCCCCCcchhhHHHHHHHHHHHHhccCCCCh--HHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccc
Q 008257          317 IQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEP--DAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKN  394 (572)
Q Consensus       317 ~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~  394 (572)
                                .+..++..++++|.+++..  .++  +..+.+.+.|++|.|+.+|.++ ++.++..++++|.++....+.
T Consensus       395 ----------~~~~v~~~a~~aL~~l~~~--~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~al~aL~~l~~~~~~  461 (530)
T 1wa5_B          395 ----------AEYKTKKEACWAISNASSG--GLQRPDIIRYLVSQGCIKPLCDLLEIA-DNRIIEVTLDALENILKMGEA  461 (530)
T ss_dssp             ----------SCHHHHHHHHHHHHHHHHH--TTTCTHHHHHHHHTTCHHHHHHHTTTC-CHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------CCHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhhhh
Confidence                      2456788999999999864  345  7788888999999999999998 999999999999999875542


Q ss_pred             cCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcC
Q 008257          395 LTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDG  474 (572)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~  474 (572)
                      .........                             ..-...+.+.|+++.|..|+.++++++++.|..+|.++..+.
T Consensus       462 ~~~~~~~~~-----------------------------~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~  512 (530)
T 1wa5_B          462 DKEARGLNI-----------------------------NENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEE  512 (530)
T ss_dssp             HHHHHTCSS-----------------------------CHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSC
T ss_pred             hhhcccccc-----------------------------cHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcc
Confidence            110000000                             000113568999999999999999999999999999998654


Q ss_pred             c
Q 008257          475 V  475 (572)
Q Consensus       475 ~  475 (572)
                      +
T Consensus       513 ~  513 (530)
T 1wa5_B          513 E  513 (530)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=2.4e-37  Score=328.39  Aligned_cols=369  Identities=16%  Similarity=0.144  Sum_probs=291.0

Q ss_pred             CCCCCCHHHHHHHHHHHHhhccC-cchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccC-cchhHHHHhhhH-H
Q 008257            3 SSKSENLLTVEKAEKTLANLEKC-ENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALN-SDVKVLVARTVG-S   79 (572)
Q Consensus         3 ~~~s~~~~~~~~A~~~L~~L~~~-~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~-~~~k~~i~~~g~-~   79 (572)
                      +++|+|+.++..|+.+|.+|+.. +.++..+++.|+|++|+++|+++++++|..|+++|.+++.. +++|..|.+.|+ |
T Consensus        10 ~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~   89 (457)
T 1xm9_A           10 YLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIR   89 (457)
T ss_dssp             HHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHH
T ss_pred             HHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHH
Confidence            56789999999999999999974 45577999999999999999999999999999999999984 899999998888 9


Q ss_pred             HHHHhcc-cCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCC---CCCCcchHHHHHHHHHHHHhcCCC
Q 008257           80 CLINIMK-SGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGS---NHLPMRLKEVSATILANVVNSGHD  155 (572)
Q Consensus        80 ~Lv~lL~-s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~---~~~~~~~~~~aa~~L~nla~~~~~  155 (572)
                      +||++|+ ++++++++.|+++|.||+.+++++..+++ |+||+|+++|..+.+   .+.....++               
T Consensus        90 ~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e---------------  153 (457)
T 1xm9_A           90 EAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSRE---------------  153 (457)
T ss_dssp             HHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC------------------------
T ss_pred             HHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcc---------------
Confidence            9999999 88999999999999999999889999999 999999999953100   000011110               


Q ss_pred             CCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhc-CChHHHHHHhcC------
Q 008257          156 FDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSS-GATISLVQFVEA------  228 (572)
Q Consensus       156 ~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~-g~i~~Lv~lL~~------  228 (572)
                                                 ..+++++.+++++|++|+.++    +.+..|++. |+++.|+.+|++      
T Consensus       154 ---------------------------~~~~~v~~~a~~aL~nLs~~~----~~~~~i~~~~g~i~~Lv~lL~~~~~~~~  202 (457)
T 1xm9_A          154 ---------------------------VVDPEVFFNATGCLRNLSSAD----AGRQTMRNYSGLIDSLMAYVQNCVAASR  202 (457)
T ss_dssp             ---------------------------CCCHHHHHHHHHHHHHHTTSH----HHHHHHTTSTTHHHHHHHHHHHHHHHTC
T ss_pred             ---------------------------cccHHHHHHHHHHHHHHccCH----HHHHHHHHcCCCHHHHHHHHHhhccccC
Confidence                                       024566777777777777652    467888887 999999999985      


Q ss_pred             CCHHHHHHHHHHHHHcCCCCC------h-------------------------------------------hHHHHHhcc
Q 008257          229 PQNDLRLASIELIQNLSPHMG------H-------------------------------------------ELADALRGA  259 (572)
Q Consensus       229 ~~~~v~~~a~~~L~~Ls~~~~------~-------------------------------------------~~~~~i~~~  259 (572)
                      .+.+++++++++|++|+....      .                                           .-.+.+...
T Consensus       203 ~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  282 (457)
T 1xm9_A          203 CDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHS  282 (457)
T ss_dssp             TTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSH
T ss_pred             CchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCc
Confidence            345678889999998873210      0                                           000123333


Q ss_pred             cCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHH----H-HHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHH
Q 008257          260 VGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLG----L-TRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEG  334 (572)
Q Consensus       260 ~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~----~-~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~  334 (572)
                       |+++.|+.+|.++.+ +.+++.|+|+|+||+.++..    + +..+.++|++|.|+.+|.+.          +..++..
T Consensus       283 -~~l~~L~~lL~~~~~-~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~----------~~~v~~~  350 (457)
T 1xm9_A          283 -DAIRTYLNLMGKSKK-DATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSG----------NSDVVRS  350 (457)
T ss_dssp             -HHHHHHHHHHHHCCC-HHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCS----------CHHHHHH
T ss_pred             -chHHHHHHHHhhcCC-HHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCC----------CHhHHHH
Confidence             678899999987764 58999999999999975432    2 23344789999999999862          4567889


Q ss_pred             HHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCC-----cHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCcc
Q 008257          335 LLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNG-----LDKVQMVSATALENLSLESKNLTKLPELPPSGFCAS  409 (572)
Q Consensus       335 a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-----~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~  409 (572)
                      |+++|.+++    .+++++..+. .|++|+|+++|.++.     ++++...++++|.++...+.                
T Consensus       351 A~~aL~nls----~~~~~~~~i~-~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~----------------  409 (457)
T 1xm9_A          351 GASLLSNMS----RHPLLHRVMG-NQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQP----------------  409 (457)
T ss_dssp             HHHHHHHHH----TSGGGHHHHH-HHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCT----------------
T ss_pred             HHHHHHHHh----cCHHHHHHHH-HhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCH----------------
Confidence            999999999    4777776655 578999999999862     24688889999999875332                


Q ss_pred             ccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCC-CHhHHHHHHHHHHHhhhcCc
Q 008257          410 IFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHT-NEKVVEASLAALSTVIDDGV  475 (572)
Q Consensus       410 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~~l~~~~~  475 (572)
                                              +....+.+.|++++|++|+.++ +++++..|.++|.+++.+.+
T Consensus       410 ------------------------~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~  452 (457)
T 1xm9_A          410 ------------------------QLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE  452 (457)
T ss_dssp             ------------------------HHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred             ------------------------HHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence                                    2233477999999999999999 99999999999999997654

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=2.7e-36  Score=319.79  Aligned_cols=410  Identities=18%  Similarity=0.161  Sum_probs=338.2

Q ss_pred             CcHHHHHHHccCCHHHHHHHHHHHHHhcc--CcchhHHHHhh-hH-HHHHHhcccC-CHHHHHHHHHHHHHhhcC-CCcH
Q 008257           37 RLQPLLTQILEGPQETKLSLAAFLGDLAL--NSDVKVLVART-VG-SCLINIMKSG-NMQAREAALKALNQISSC-EPSA  110 (572)
Q Consensus        37 ~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~--~~~~k~~i~~~-g~-~~Lv~lL~s~-~~~~~~~A~~aL~~Ls~~-~~~~  110 (572)
                      .++.|+..|+++++++|..|+.+|.++..  .+.....+.+. |+ |.|+++|+++ ++.+|..|+++|.+++.. +++.
T Consensus        21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~  100 (450)
T 2jdq_A           21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT  100 (450)
T ss_dssp             -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence            58999999999999999999999999753  23222334444 77 9999999998 899999999999999985 4567


Q ss_pred             HHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhc-CChhHH
Q 008257          111 KVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISN-TGPTIE  189 (572)
Q Consensus       111 ~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~-~~~~~q  189 (572)
                      ..+++.|++|.|+++|+++     ++.+++.|+++|++++.......        ..+...|+++.|++++.+ .+++++
T Consensus       101 ~~~~~~~~i~~L~~lL~~~-----~~~vr~~a~~~L~~l~~~~~~~~--------~~~~~~~~i~~L~~~l~~~~~~~v~  167 (450)
T 2jdq_A          101 RIVIQAGAVPIFIELLSSE-----FEDVQEQAVWALGNIAGDSTMCR--------DYVLDCNILPPLLQLFSKQNRLTMT  167 (450)
T ss_dssp             HHHHHTTHHHHHHHHTTCS-----CHHHHHHHHHHHHHHHTTCHHHH--------HHHHHTTCHHHHHHHTTSCCCHHHH
T ss_pred             HHHHhCCCHHHHHHHHcCC-----CHHHHHHHHHHHHHHccCCHHHH--------HHHHHCCCHHHHHHHhcCCCCHHHH
Confidence            7788999999999999864     37999999999999997542111        235567899999999995 789999


Q ss_pred             HHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhh
Q 008257          190 CKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRV  269 (572)
Q Consensus       190 ~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~l  269 (572)
                      ..++++|.+++......  ....+ -.++++.|+.++.++++.++..++++|.+++.+.+ +..+.+... |+++.|+++
T Consensus       168 ~~a~~~L~~l~~~~~~~--~~~~~-~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~-~~i~~L~~l  242 (450)
T 2jdq_A          168 RNAVWALSNLCRGKSPP--PEFAK-VSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPN-DKIQAVIDA-GVCRRLVEL  242 (450)
T ss_dssp             HHHHHHHHHHHCCSSSC--CCGGG-TGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSH-HHHHHHHHT-TTHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCC--CCHHH-HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCc-HHHHHHHHc-CcHHHHHHH
Confidence            99999999999764110  01111 27899999999999999999999999999998743 333455555 899999999


Q ss_pred             hccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCC
Q 008257          270 ISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDE  349 (572)
Q Consensus       270 L~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~  349 (572)
                      |.+++.  .++..|+++|++++.+++...+.+.+.|+++.|+.+|.+.          +..+++.++++|.+++.+   +
T Consensus       243 l~~~~~--~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~----------~~~vr~~a~~~L~~l~~~---~  307 (450)
T 2jdq_A          243 LMHNDY--KVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSP----------KESIKKEACWTISNITAG---N  307 (450)
T ss_dssp             TTCSCH--HHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCS----------SHHHHHHHHHHHHHHTTS---C
T ss_pred             HCCCch--hHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCC----------CHHHHHHHHHHHHHHHcC---C
Confidence            997775  8999999999999998888878899999999999999862          456788999999999964   7


Q ss_pred             hHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccC
Q 008257          350 PDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRG  429 (572)
Q Consensus       350 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~  429 (572)
                      ++..+.+.+.|++|.|+++|.++ ++.+|..|+++|.+++.....                                   
T Consensus       308 ~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~-----------------------------------  351 (450)
T 2jdq_A          308 RAQIQTVIDANIFPALISILQTA-EFRTRKEAAWAITNATSGGSA-----------------------------------  351 (450)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHCCH-----------------------------------
T ss_pred             HHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCH-----------------------------------
Confidence            78888889999999999999998 899999999999999864210                                   


Q ss_pred             ccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccc--------hhhHHHHHhcCChHHHHHHHhhcC
Q 008257          430 LCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDI--------EQGVMVLCEAQGIKPILDVLLEKR  501 (572)
Q Consensus       430 ~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~--------~~~~~~i~~~g~i~~L~~lL~~~~  501 (572)
                          .....+++.|++++|+++|++++++++..|+.+|.+++..++..        ......+.++||++.|..++ .++
T Consensus       352 ----~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~-~~~  426 (450)
T 2jdq_A          352 ----EQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQ-SHE  426 (450)
T ss_dssp             ----HHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHH-CHH
T ss_pred             ----HHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHH-cCC
Confidence                11123568899999999999999999999999999999754321        23457899999999999988 689


Q ss_pred             CHHHHHHHHHHHHHHHcch
Q 008257          502 TENLQRRAVWVVERILRTD  520 (572)
Q Consensus       502 ~~~~~~~a~~~l~~l~~~~  520 (572)
                      ++.+++.|..+|.+++..+
T Consensus       427 ~~~v~~~a~~~l~~~~~~~  445 (450)
T 2jdq_A          427 NQEIYQKAFDLIEHYFGTE  445 (450)
T ss_dssp             HHHHHHHHHHHHHHHHCCC
T ss_pred             CHHHHHHHHHHHHHHCCcc
Confidence            9999999999999999664

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=5.5e-35  Score=309.70  Aligned_cols=411  Identities=14%  Similarity=0.132  Sum_probs=339.4

Q ss_pred             CCCCCCHHHHHHHHHHHHhhcc--CcchHHHHHHc-CCcHHHHHHHccC-CHHHHHHHHHHHHHhcc-CcchhHHHHhhh
Q 008257            3 SSKSENLLTVEKAEKTLANLEK--CENNVRQMAEN-GRLQPLLTQILEG-PQETKLSLAAFLGDLAL-NSDVKVLVARTV   77 (572)
Q Consensus         3 ~~~s~~~~~~~~A~~~L~~L~~--~~~n~~~i~~~-g~i~~Lv~~L~~~-~~~~~~~aa~~L~~l~~-~~~~k~~i~~~g   77 (572)
                      +++|+|+.+++.|...|+.+..  .+.....+++. |+++.|+++|+++ +.++|..|+++|.+++. +++++..+.+.|
T Consensus        28 ~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~  107 (450)
T 2jdq_A           28 MIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAG  107 (450)
T ss_dssp             HHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTT
T ss_pred             HhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCC
Confidence            3578999999999999999743  34445667777 9999999999998 89999999999999988 456666777777


Q ss_pred             H-HHHHHhcccCCHHHHHHHHHHHHHhhcCC-CcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCC
Q 008257           78 G-SCLINIMKSGNMQAREAALKALNQISSCE-PSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHD  155 (572)
Q Consensus        78 ~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~-~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~  155 (572)
                      + |.|+++|+++++++|+.|+++|.+|+.+. +++..+++.|++|+|+++|.+.    .+..++..|+++|++++.+...
T Consensus       108 ~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~----~~~~v~~~a~~~L~~l~~~~~~  183 (450)
T 2jdq_A          108 AVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQ----NRLTMTRNAVWALSNLCRGKSP  183 (450)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSC----CCHHHHHHHHHHHHHHHCCSSS
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCC----CCHHHHHHHHHHHHHHhCCCCC
Confidence            7 99999999999999999999999999875 4677888999999999999842    2478999999999999975411


Q ss_pred             CCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHH
Q 008257          156 FDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRL  235 (572)
Q Consensus       156 ~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~  235 (572)
                      ...       ..+ ..++++.|++++.+++++++..++++|.+++....   ..+..+.+.|+++.|+.+|.+++++++.
T Consensus       184 ~~~-------~~~-~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~---~~~~~~~~~~~i~~L~~ll~~~~~~v~~  252 (450)
T 2jdq_A          184 PPE-------FAK-VSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPN---DKIQAVIDAGVCRRLVELLMHNDYKVVS  252 (450)
T ss_dssp             CCC-------GGG-TGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSH---HHHHHHHHTTTHHHHHHHTTCSCHHHHH
T ss_pred             CCC-------HHH-HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCc---HHHHHHHHcCcHHHHHHHHCCCchhHHH
Confidence            111       112 27899999999999999999999999999998653   4566778899999999999999999999


Q ss_pred             HHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHh
Q 008257          236 ASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVK  315 (572)
Q Consensus       236 ~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~  315 (572)
                      .|+++|.+++.+.+ +..+.+... |+++.|+++|.+++.  .++..|+++|++++.+++...+.+++.|++|.|+.+|.
T Consensus       253 ~a~~~L~~l~~~~~-~~~~~~~~~-~~l~~L~~ll~~~~~--~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~  328 (450)
T 2jdq_A          253 PALRAVGNIVTGDD-IQTQVILNC-SALQSLLHLLSSPKE--SIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQ  328 (450)
T ss_dssp             HHHHHHHHHTTSCH-HHHHHHHTT-THHHHHHHHTTCSSH--HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCCh-HHHHHHHHC-ccHHHHHHHHcCCCH--HHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHh
Confidence            99999999998743 333455665 899999999998774  89999999999999877788788999999999999998


Q ss_pred             hhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhcccc
Q 008257          316 SIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNL  395 (572)
Q Consensus       316 ~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~  395 (572)
                      +.          +..++..++++|.+++..  .+++..+.+.+.|++|.|+++|+++ ++.++..|+++|.+++...+..
T Consensus       329 ~~----------~~~v~~~a~~~L~~l~~~--~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~  395 (450)
T 2jdq_A          329 TA----------EFRTRKEAAWAITNATSG--GSAEQIKYLVELGCIKPLCDLLTVM-DSKIVQVALNGLENILRLGEQE  395 (450)
T ss_dssp             HS----------CHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHTCHHHHHHGGGSS-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cC----------CHHHHHHHHHHHHHHHcC--CCHHHHHHHHHCCCHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhchhh
Confidence            62          456789999999999864  3678888888999999999999998 8999999999999998755422


Q ss_pred             CCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcC
Q 008257          396 TKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDG  474 (572)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~  474 (572)
                      .+......    .                         .-...+.+.|+++.|..++++++..+++.|..+|.++..+.
T Consensus       396 ~~~~~~~~----~-------------------------~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~  445 (450)
T 2jdq_A          396 AKRNGTGI----N-------------------------PYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTE  445 (450)
T ss_dssp             HHHSCSCC----C-------------------------HHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC
T ss_pred             hhccccch----h-------------------------HHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcc
Confidence            10000000    0                         00112568899999999999999999999999999998654

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=100.00  E-value=9.2e-33  Score=281.06  Aligned_cols=282  Identities=15%  Similarity=0.171  Sum_probs=233.6

Q ss_pred             CCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccC------CCCCCcchHHHHHHHHHHHHhcCCCCCcccc
Q 008257           88 GNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVG------SNHLPMRLKEVSATILANVVNSGHDFDSITV  161 (572)
Q Consensus        88 ~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~------~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~  161 (572)
                      .+...+..|+++|.|++.++++|+.|++.|++|+|+.+|.+..      .+..++.+|++|+|+|.||+.++...+    
T Consensus        44 ~~~~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k----  119 (354)
T 3nmw_A           44 PVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANK----  119 (354)
T ss_dssp             GGGGTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHH----
T ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHH----
Confidence            3446677999999999999999999999999999999996320      001136799999999999997543111    


Q ss_pred             CCCccccc-hhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHh-cCCCHHHHHHHHH
Q 008257          162 GPDNQTLV-SEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFV-EAPQNDLRLASIE  239 (572)
Q Consensus       162 ~~~~~~l~-~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~v~~~a~~  239 (572)
                          ..+. ..|+||.|+++|+++++++|..++++|.+|+...+  +..+..|.+.|+||+|+++| +++++++++.|++
T Consensus       120 ----~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~--~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~  193 (354)
T 3nmw_A          120 ----ATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRAD--VNSKKTLREVGSVKALMECALEVKKESTLKSVLS  193 (354)
T ss_dssp             ----HHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCC--HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred             ----HHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCC--HHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHH
Confidence                1232 46779999999999999999999999999998632  35788999999999999975 6678899999999


Q ss_pred             HHHHcCCCCChhHHHHHh-cccCChhhHHhhhccCCCC--hHHHHHHHHHHhcCCC---CcHHHHHHHHhCCChHHHHHH
Q 008257          240 LIQNLSPHMGHELADALR-GAVGQLGSLIRVISENVGI--SKEQAAAVGLLAELPE---RDLGLTRQMLDEGAFGLIFSR  313 (572)
Q Consensus       240 ~L~~Ls~~~~~~~~~~i~-~~~g~l~~Lv~lL~~~~~~--~~~~~~A~~~L~~L~~---~~~~~~~~l~~~g~l~~Lv~l  313 (572)
                      +|++|+.+.+ +....+. .. |+++.|+++|.++++.  .+++..|+++|+||+.   .+++.++.+.++|++|+|+.+
T Consensus       194 aL~nLs~~~~-~nk~~i~~~~-Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~l  271 (354)
T 3nmw_A          194 ALWNLSAHCT-ENKADICAVD-GALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQH  271 (354)
T ss_dssp             HHHHHHTTCH-HHHHHHHHST-THHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHH
T ss_pred             HHHHHHccCh-hhhHHHHHhc-CcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHH
Confidence            9999998532 2234555 45 9999999999877641  1588999999999985   577888999999999999999


Q ss_pred             HhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhcc
Q 008257          314 VKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESK  393 (572)
Q Consensus       314 L~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~  393 (572)
                      |++.          ...+++.|+++|++++..   +++.++.+.+.|++|+|+++|+++ ++.+|+.|+++|.||+.+.+
T Consensus       272 L~~~----------~~~v~~~A~~aL~nLa~~---~~~~~~~i~~~G~i~~Lv~LL~s~-~~~i~~~A~~aL~nL~~~~~  337 (354)
T 3nmw_A          272 LKSH----------SLTIVSNACGTLWNLSAR---NPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMANRP  337 (354)
T ss_dssp             TTCS----------CHHHHHHHHHHHHHHTSS---CHHHHHHHHHTTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCC
T ss_pred             HcCC----------ChHHHHHHHHHHHHHhCC---CHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCCH
Confidence            9862          356799999999999963   899999999999999999999998 99999999999999998765


Q ss_pred             cc
Q 008257          394 NL  395 (572)
Q Consensus       394 ~~  395 (572)
                      ..
T Consensus       338 ~~  339 (354)
T 3nmw_A          338 AK  339 (354)
T ss_dssp             GG
T ss_pred             HH
Confidence            43

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=100.00  E-value=2.1e-32  Score=278.34  Aligned_cols=266  Identities=18%  Similarity=0.122  Sum_probs=223.6

Q ss_pred             HHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHcc-----------CCHHHHHHHHHHHHHhccCc-chhHHHH-hh
Q 008257           10 LTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILE-----------GPQETKLSLAAFLGDLALNS-DVKVLVA-RT   76 (572)
Q Consensus        10 ~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~-----------~~~~~~~~aa~~L~~l~~~~-~~k~~i~-~~   76 (572)
                      ..++.|..+|.+++.+++|++.|++.|++++|+.+|..           .++++|.+|+++|.+++.++ ++|..|. ..
T Consensus        47 ~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~  126 (354)
T 3nmw_A           47 HQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMK  126 (354)
T ss_dssp             GTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence            34557999999999999999999999999999999952           24678999999999999855 5888885 45


Q ss_pred             hH-HHHHHhcccCCHHHHHHHHHHHHHhhcC--CCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcC
Q 008257           77 VG-SCLINIMKSGNMQAREAALKALNQISSC--EPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSG  153 (572)
Q Consensus        77 g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~--~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~  153 (572)
                      |+ |+||++|+++++++|+.|+++|+||+..  ++++..+++.|+||+|+++|.+.    .+..+++.|+++|+||+.++
T Consensus       127 GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~----~~~~~~~~A~~aL~nLs~~~  202 (354)
T 3nmw_A          127 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEV----KKESTLKSVLSALWNLSAHC  202 (354)
T ss_dssp             HHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHTTC
T ss_pred             CcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcC----CCHHHHHHHHHHHHHHHccC
Confidence            75 9999999999999999999999999974  46788999999999999986442    13678888888888887632


Q ss_pred             CCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHH-hcCChHHHHHHhcCCCH-
Q 008257          154 HDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIK-SSGATISLVQFVEAPQN-  231 (572)
Q Consensus       154 ~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~-~~g~i~~Lv~lL~~~~~-  231 (572)
                                                                           ++.+..|. ..|+++.|+.+|.++++ 
T Consensus       203 -----------------------------------------------------~~nk~~i~~~~Gai~~Lv~lL~~~~~~  229 (354)
T 3nmw_A          203 -----------------------------------------------------TENKADICAVDGALAFLVGTLTYRSQT  229 (354)
T ss_dssp             -----------------------------------------------------HHHHHHHHHSTTHHHHHHHHTTCCCSS
T ss_pred             -----------------------------------------------------hhhhHHHHHhcCcHHHHHHHhccCCCc
Confidence                                                                 12345555 78999999999987754 


Q ss_pred             ---HHHHHHHHHHHHcCCC--CChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCC
Q 008257          232 ---DLRLASIELIQNLSPH--MGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGA  306 (572)
Q Consensus       232 ---~v~~~a~~~L~~Ls~~--~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~  306 (572)
                         ++++.|+++|++|+.+  ...+..+.+.+. |+++.|+++|.+++.  .++..|+++|+||+.++++.++.++++|+
T Consensus       230 ~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~-g~i~~Lv~lL~~~~~--~v~~~A~~aL~nLa~~~~~~~~~i~~~G~  306 (354)
T 3nmw_A          230 NTLAIIESGGGILRNVSSLIATNEDHRQILREN-NCLQTLLQHLKSHSL--TIVSNACGTLWNLSARNPKDQEALWDMGA  306 (354)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTT-THHHHHHHHTTCSCH--HHHHHHHHHHHHHTSSCHHHHHHHHHTTH
T ss_pred             ccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHc-CCHHHHHHHHcCCCh--HHHHHHHHHHHHHhCCCHHHHHHHHHCCC
Confidence               5999999999999961  133445667777 999999999998885  89999999999999878889899999999


Q ss_pred             hHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhcc
Q 008257          307 FGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFV  345 (572)
Q Consensus       307 l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~  345 (572)
                      +|+|+.+|++.          +..+++.|+++|.+++..
T Consensus       307 i~~Lv~LL~s~----------~~~i~~~A~~aL~nL~~~  335 (354)
T 3nmw_A          307 VSMLKNLIHSK----------HKMIAMGSAAALRNLMAN  335 (354)
T ss_dssp             HHHHHTTTTCS----------SHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhCC----------CHHHHHHHHHHHHHHHcC
Confidence            99999999762          456789999999999974

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.95  E-value=5.8e-27  Score=253.67  Aligned_cols=468  Identities=11%  Similarity=0.059  Sum_probs=321.0

Q ss_pred             CCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccCc-chhHHHHhhhHHHHHHhc
Q 008257            7 ENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNS-DVKVLVARTVGSCLINIM   85 (572)
Q Consensus         7 ~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~-~~k~~i~~~g~~~Lv~lL   85 (572)
                      .+......+.+.|...+.++..+.++ ...+++.|...+++  .+.|..|+-.|..+.... .....+.+ -++.++++|
T Consensus       268 ~~~~~~~a~L~lLsaACi~~~cR~~I-~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si~~-La~~~~~~L  343 (778)
T 3opb_A          268 QDLQFTKELLRLLSSACIDETMRTYI-TENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINLKQ-LSEIFINAI  343 (778)
T ss_dssp             CCHHHHHHHHHHHHHHCCSHHHHHHH-HHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCHHH-HHHHHHHHT
T ss_pred             cchHHHHHHHHHHHHHhCCcHHHHHH-HHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcHHH-HHHHHHHHH
Confidence            45666777788888888777665555 66788999988865  578889999999887632 22222222 238899999


Q ss_pred             ccCCHHHHHHHHHHHHHhhcCCCcHHHHH-HcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCC
Q 008257           86 KSGNMQAREAALKALNQISSCEPSAKVLI-HAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPD  164 (572)
Q Consensus        86 ~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv-~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~  164 (572)
                      ..++.+.++.|+..|..|+.+++.++.++ +.|.++.|+++++..    .+..+..-++.+|.|++.+.+....     .
T Consensus       344 ~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~----~d~s~~Ygal~IL~NLt~~~~~~~~-----e  414 (778)
T 3opb_A          344 SRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQ----KMTHCLYGLLVIMANLSTLPEEXXX-----X  414 (778)
T ss_dssp             TTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTT----CCTTHHHHHHHHHHHTTCCCCCCCC-----C
T ss_pred             hcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCC----CCchHHHHHHHHHHHhcCCCcccch-----h
Confidence            98887779999999999999999998888 677799999999852    1367899999999999886543111     0


Q ss_pred             ccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHc
Q 008257          165 NQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNL  244 (572)
Q Consensus       165 ~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L  244 (572)
                            ..-+..|-.+.+...|+.+.... .+   ....+..+..+..+.++|++|.|+.++.++++.+|+.|+++|.+|
T Consensus       415 ------~~~l~~Lk~~A~~~~p~~~~~d~-~~---~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nL  484 (778)
T 3opb_A          415 ------XXXXXXXXXXXXXXXPAADKVGA-EK---AAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNI  484 (778)
T ss_dssp             ------CC------------------CCT-HH---HHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHH
T ss_pred             ------hhhhhhhhhhccccCcccCcccc-cc---cchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence                  01122233222222222211000 00   000000012567788999999999999999999999999999999


Q ss_pred             CCCCChhHHHHHhcccCChhhHHhhhccCCCC-hHHHHHHHHHHhcCCC-CcHHHHHHHHh---CCChHHHHHHHhhhcc
Q 008257          245 SPHMGHELADALRGAVGQLGSLIRVISENVGI-SKEQAAAVGLLAELPE-RDLGLTRQMLD---EGAFGLIFSRVKSIQL  319 (572)
Q Consensus       245 s~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~-~~~~~~A~~~L~~L~~-~~~~~~~~l~~---~g~l~~Lv~lL~~~~~  319 (572)
                      +.+  .+.+..+... |+++.|+.+|.+.+.. ...+..|+.+|.+|.. .++..  .|-.   .|++|+|+.+|.... 
T Consensus       485 S~d--~~~R~~lvqq-Gal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~--~f~~~~~~~aI~pLv~LL~~~~-  558 (778)
T 3opb_A          485 TRS--KNFIPQLAQQ-GAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL--IFKKYSALNAIPFLFELLPRST-  558 (778)
T ss_dssp             HTS--GGGHHHHHHT-THHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH--HSSSSCSTTHHHHHHHTSCCSS-
T ss_pred             cCC--HHHHHHHHHC-CCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH--HcCCCccccchHHHHHHcCCCC-
Confidence            966  3344567776 9999999999988641 1378999999999874 34443  2311   399999999998311 


Q ss_pred             CCCC---CCcc-hh-hHHHHHHHHHHHHhccCCCC---hHHHHHHHHc-CchHHHHHHhccCCcHHHHHHHHHHHHHhhh
Q 008257          320 GETR---GSRF-VT-PFLEGLLSVLARVTFVLSDE---PDAIALCCEH-NLAALFIELLQSNGLDKVQMVSATALENLSL  390 (572)
Q Consensus       320 ~~~~---~~~~-~~-~~~e~a~~aL~~l~~~~~~~---~~~~~~i~~~-g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~  390 (572)
                      +...   ..+. .. --+..|+.||.|++..  .+   .+.++.++++ |++|.|.++|.++ ++.+|+.|+++++||+.
T Consensus       559 ~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~--~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~-n~~VrrAA~elI~NL~~  635 (778)
T 3opb_A          559 PVDDNPLHNDEQIKLTDNYEALLALTNLASS--ETSDGEEVCKHIVSTKVYWSTIENLMLDE-NVPLQRSTLELISNMMS  635 (778)
T ss_dssp             SCSSCC---CCCCCHHHHHHHHHHHHHHHHC--CSHHHHHHHHHHHHSHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHT
T ss_pred             CcccccccccccccHHHHHHHHHHHHHHhcC--CcccchHHHHHHHHhcCHHHHHHHHHhCC-CHHHHHHHHHHHHHHhC
Confidence            1000   0000 01 1144699999999964  22   2567778885 9999999999998 89999999999999987


Q ss_pred             hccccC-CCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHH
Q 008257          391 ESKNLT-KLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALST  469 (572)
Q Consensus       391 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~  469 (572)
                      +..... +..             ..                   .+   -...+.+++||.|+++.+.+++.+|++||.+
T Consensus       636 ~~e~i~~k~~-------------~~-------------------~~---~~~~~rL~lLV~Ll~s~D~~~r~AAagALAn  680 (778)
T 3opb_A          636 HPLTIAAKFF-------------NL-------------------EN---PQSLRNFNILVKLLQLSDVESQRAVAAIFAN  680 (778)
T ss_dssp             SGGGTGGGTS-------------CC-------------------SS---HHHHHHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHH-------------hh-------------------cC---chhhccHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            543210 100             00                   00   0123469999999999999999999999999


Q ss_pred             hhhcCccchhhHHHHHhc-CChHHHHHHHhhc--CCHHHHHHHHHHHHHHHc----c--hhhhhhhcCCCCchHHHHHHh
Q 008257          470 VIDDGVDIEQGVMVLCEA-QGIKPILDVLLEK--RTENLQRRAVWVVERILR----T--DDIAYEVSGDPNVSTALVDAF  540 (572)
Q Consensus       470 l~~~~~~~~~~~~~i~~~-g~i~~L~~lL~~~--~~~~~~~~a~~~l~~l~~----~--~~~~~~~~~~~~~~~~Lv~ll  540 (572)
                      +....+   ..+..+.+. +||..++++++ .  .+++++.+++.++.++++    +  ++....+..+......|.+++
T Consensus       681 Lts~~~---~ia~~ll~~~~gi~~Ll~lL~-~~~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l  756 (778)
T 3opb_A          681 IATTIP---LIAKELLTKKELIENAIQVFA-DQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSL  756 (778)
T ss_dssp             HHHHCH---HHHHHHTTCHHHHHHHHHHHH-HTTTCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHH
T ss_pred             hcCCCh---HHHHHHHHccccHHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHH
Confidence            964322   346677777 89999999995 6  899999999999999996    2  233345554555556788888


Q ss_pred             hcCCc
Q 008257          541 QHADY  545 (572)
Q Consensus       541 ~~~~~  545 (572)
                      ++++.
T Consensus       757 k~~~~  761 (778)
T 3opb_A          757 KRGDS  761 (778)
T ss_dssp             SSSSS
T ss_pred             hCCCc
Confidence            77653

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.94  E-value=4.2e-25  Score=214.56  Aligned_cols=241  Identities=20%  Similarity=0.253  Sum_probs=211.8

Q ss_pred             HHHHHHhcccCCHHHHHHHHHHHHHhhcCCC-cHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCC
Q 008257           78 GSCLINIMKSGNMQAREAALKALNQISSCEP-SAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDF  156 (572)
Q Consensus        78 ~~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~-~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~  156 (572)
                      +|.|+++|+++++++|..|+++|.+++..++ ++..+++.|++|+|+++|.+.     +..+++.|+++|+|++.++   
T Consensus         4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-----~~~v~~~a~~~L~~l~~~~---   75 (252)
T 4hxt_A            4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTST-----DSEVQKEAARALANIASGP---   75 (252)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-----CHHHHHHHHHHHHHHTTSC---
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCC-----CHHHHHHHHHHHHHHHcCC---
Confidence            4999999999999999999999999998765 788999999999999999864     2788999999999987532   


Q ss_pred             CccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHH
Q 008257          157 DSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLA  236 (572)
Q Consensus       157 ~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~  236 (572)
                                                                        +..+..+.+.|+++.|+.+|++++++++..
T Consensus        76 --------------------------------------------------~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~  105 (252)
T 4hxt_A           76 --------------------------------------------------DEAIKAIVDAGGVEVLVKLLTSTDSEVQKE  105 (252)
T ss_dssp             --------------------------------------------------HHHHHHHHHTTHHHHHHHHTTCSSHHHHHH
T ss_pred             --------------------------------------------------hHHHHHHHHCCCHHHHHHHHcCCCHHHHHH
Confidence                                                              135677788999999999999999999999


Q ss_pred             HHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhh
Q 008257          237 SIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKS  316 (572)
Q Consensus       237 a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~  316 (572)
                      |+++|.+|+.+. .+..+.+.+. |+++.|+++|.+++.  .++..|+++|++++.+++..++.+.+.|+++.|+.+|.+
T Consensus       106 a~~~L~~l~~~~-~~~~~~~~~~-~~i~~L~~~l~~~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~  181 (252)
T 4hxt_A          106 AARALANIASGP-DEAIKAIVDA-GGVEVLVKLLTSTDS--EVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS  181 (252)
T ss_dssp             HHHHHHHHTTSC-HHHHHHHHHT-THHHHHHHHTTCSCH--HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCC-HHHHHHHHHC-CCHHHHHHHHcCCCH--HHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCC
Confidence            999999999763 3444566666 999999999998885  899999999999999888887899999999999999985


Q ss_pred             hccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccc
Q 008257          317 IQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKN  394 (572)
Q Consensus       317 ~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~  394 (572)
                                .+..+++.++++|.+++..   +++.++.+.+.|++|.|+++++++ ++.+|+.|+++|.+++.....
T Consensus       182 ----------~~~~v~~~a~~~L~~l~~~---~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~  245 (252)
T 4hxt_A          182 ----------TDSEVQKEAARALANIASG---PTSAIKAIVDAGGVEVLQKLLTST-DSEVQKEAQRALENIKSGGWL  245 (252)
T ss_dssp             ----------SCHHHHHHHHHHHHHHTTS---BHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHTCBC
T ss_pred             ----------CCHHHHHHHHHHHHHHHcC---CHHHHHHHHHCCCHHHHHHHHCCC-cHHHHHHHHHHHHHHHcCCCc
Confidence                      2467889999999999963   888999999999999999999998 899999999999999886553

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.94  E-value=2e-24  Score=233.80  Aligned_cols=433  Identities=15%  Similarity=0.116  Sum_probs=314.7

Q ss_pred             HHHHHHHHhcc-CcchhHHH-HhhhH-HHHHHhcccCC-HHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccC
Q 008257           55 SLAAFLGDLAL-NSDVKVLV-ARTVG-SCLINIMKSGN-MQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVG  130 (572)
Q Consensus        55 ~aa~~L~~l~~-~~~~k~~i-~~~g~-~~Lv~lL~s~~-~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~  130 (572)
                      .+..+|..+.- ..+....+ -..|. +.|.+.+.++. ..+...++..|.. +..+++++..+..++++.|.+++++  
T Consensus       231 ~~~~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsa-ACi~~~cR~~I~~~~~~~L~~~l~~--  307 (778)
T 3opb_A          231 IIVKTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSS-ACIDETMRTYITENYLQLLERSLNV--  307 (778)
T ss_dssp             HHHHHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHHHHHHTTS--
T ss_pred             HHHHHHHHHhcCCHHHHHHHHccccHHHHHHHHHhcccchHHHHHHHHHHHH-HhCCcHHHHHHHHhHHHHHHHHhcc--
Confidence            34444444433 33333333 34566 88888886654 4444555555544 4455555555577888999999964  


Q ss_pred             CCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHH
Q 008257          131 SNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVV  210 (572)
Q Consensus       131 ~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~  210 (572)
                           ..+|..|+-+|..+.......          ........+.+.+.|..++.+-+..|+..|..++.++    +++
T Consensus       308 -----~~ir~lAavvL~KL~~~~~~~----------~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~----~VK  368 (778)
T 3opb_A          308 -----EDVQIYSALVLVKTWSFTKLT----------CINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLKA----SVK  368 (778)
T ss_dssp             -----GGGHHHHHHHHHHHTGGGTCT----------TCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSS----HHH
T ss_pred             -----HHHHHHHHHHHHHHhcCCCCC----------cCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCH----HHH
Confidence                 478999999999998754321          1122457788888888877677999999999999987    567


Q ss_pred             HHHHhcCC-hHHHHHHhcC-CCHHHHHHHHHHHHHcCCCCCh---------------------------------h----
Q 008257          211 SAIKSSGA-TISLVQFVEA-PQNDLRLASIELIQNLSPHMGH---------------------------------E----  251 (572)
Q Consensus       211 ~~i~~~g~-i~~Lv~lL~~-~~~~v~~~a~~~L~~Ls~~~~~---------------------------------~----  251 (572)
                      ..+++..+ ++.|+.+++. ++..+.-.++.+|.|++...+.                                 +    
T Consensus       369 e~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~  448 (778)
T 3opb_A          369 IMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLF  448 (778)
T ss_dssp             HHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHH
Confidence            77777655 9999999995 6677888999999999853110                                 0    


Q ss_pred             HHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhH
Q 008257          252 LADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPF  331 (572)
Q Consensus       252 ~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~  331 (572)
                      ..+.+.+. |++|.|+.++.++++  ..+..|+++|.+++. +++++..+++.|++++|+.+|.+...       .....
T Consensus       449 ~~~~l~ea-GvIp~Lv~Ll~S~s~--~~re~A~~aL~nLS~-d~~~R~~lvqqGal~~LL~lL~s~~~-------~~~~~  517 (778)
T 3opb_A          449 NEKYILRT-ELISFLKREMHNLSP--NCKQQVVRIIYNITR-SKNFIPQLAQQGAVKIILEYLANKQD-------IGEPI  517 (778)
T ss_dssp             HHHHTTTT-THHHHHHHHGGGSCH--HHHHHHHHHHHHHHT-SGGGHHHHHHTTHHHHHHHHTTCC----------CCHH
T ss_pred             HHHHHHHC-cCHHHHHHHHcCCCH--HHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCCC-------cchHH
Confidence            12334555 999999999999885  899999999999987 68899999999999999999986321       01135


Q ss_pred             HHHHHHHHHHHhccCCCChHHHHHH-HHcCchHHHHHHhcc-CCcH------------HHHHHHHHHHHHhhhhccccCC
Q 008257          332 LEGLLSVLARVTFVLSDEPDAIALC-CEHNLAALFIELLQS-NGLD------------KVQMVSATALENLSLESKNLTK  397 (572)
Q Consensus       332 ~e~a~~aL~~l~~~~~~~~~~~~~i-~~~g~i~~Lv~lL~~-~~~~------------~vk~~Aa~aL~~ls~~~~~~~~  397 (572)
                      ++.|+.+|.+++..  .||...-.- .-.|++|+|++||.. +...            ..+..|+.||.||+..+.+...
T Consensus       518 k~~AA~ALArLlis--~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E  595 (778)
T 3opb_A          518 RILGCRALTRMLIF--TNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGE  595 (778)
T ss_dssp             HHHHHHHHHHHHHT--SCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHH
T ss_pred             HHHHHHHHHHHHhc--CCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccch
Confidence            78999999999855  577652100 013899999999983 2111            3378999999999975421000


Q ss_pred             CCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhc-cchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCcc
Q 008257          398 LPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEG-HAVEKLIALLDHTNEKVVEASLAALSTVIDDGVD  476 (572)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~-g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~  476 (572)
                                                          .....+++. |+++.|+++|.+.++.++.+|+.++++|+.+++.
T Consensus       596 ------------------------------------~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~  639 (778)
T 3opb_A          596 ------------------------------------EVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLT  639 (778)
T ss_dssp             ------------------------------------HHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGG
T ss_pred             ------------------------------------HHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHH
Confidence                                                001236674 9999999999999999999999999999986531


Q ss_pred             chhhHHHHHh------cCChHHHHHHHhhcCCHHHHHHHHHHHHHHH-cchhhhhhhcCCCCchHHHHHHhhc--CCchh
Q 008257          477 IEQGVMVLCE------AQGIKPILDVLLEKRTENLQRRAVWVVERIL-RTDDIAYEVSGDPNVSTALVDAFQH--ADYRT  547 (572)
Q Consensus       477 ~~~~~~~i~~------~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~-~~~~~~~~~~~~~~~~~~Lv~ll~~--~~~~~  547 (572)
                      .   ...+.+      .+++++|+.++ .++|+..|+.|+|+|.++. .++.+...+....+....|++++++  +++++
T Consensus       640 i---~~k~~~~~~~~~~~rL~lLV~Ll-~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l  715 (778)
T 3opb_A          640 I---AAKFFNLENPQSLRNFNILVKLL-QLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIEL  715 (778)
T ss_dssp             T---GGGTSCCSSHHHHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHH
T ss_pred             H---HHHHHhhcCchhhccHHHHHHHH-cCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHH
Confidence            1   012222      22488999999 6999999999999999996 5677767776663333599999999  89999


Q ss_pred             HHHHHHHHHhhcccC
Q 008257          548 RQIAERALKHIDKIP  562 (572)
Q Consensus       548 ~~~Aa~aL~~L~~~~  562 (572)
                      +.+++.++.+|..+.
T Consensus       716 ~~R~~~~l~NL~~~~  730 (778)
T 3opb_A          716 RQRLLMLFFGLFEVI  730 (778)
T ss_dssp             HHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999999743

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.94  E-value=4.4e-26  Score=222.06  Aligned_cols=229  Identities=21%  Similarity=0.270  Sum_probs=203.6

Q ss_pred             CCCCCCHHHHHHHHHHHHh-hccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhcc-CcchhHHHHhhhH-H
Q 008257            3 SSKSENLLTVEKAEKTLAN-LEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLAL-NSDVKVLVARTVG-S   79 (572)
Q Consensus         3 ~~~s~~~~~~~~A~~~L~~-L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~-~~~~k~~i~~~g~-~   79 (572)
                      +++|+|+.++..|+.+|.+ ++.+++++..+++.|++++|+++|++++++++..|+++|.+++. +++++..+.+.|+ |
T Consensus        20 ~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~   99 (252)
T 4db8_A           20 QLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALP   99 (252)
T ss_dssp             HHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHH
T ss_pred             HHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHH
Confidence            5689999999999999966 45578889999999999999999999999999999999999998 6788888888888 9


Q ss_pred             HHHHhcccCCHHHHHHHHHHHHHhhcCCCcH-HHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCc
Q 008257           80 CLINIMKSGNMQAREAALKALNQISSCEPSA-KVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDS  158 (572)
Q Consensus        80 ~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~-~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~  158 (572)
                      .|+++|+++++++++.|+++|.+|+.+++++ ..+++.|++|.|+++|.+.     +..++..|+++|+||+.++...  
T Consensus       100 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-----~~~v~~~a~~~L~~l~~~~~~~--  172 (252)
T 4db8_A          100 ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-----NEQILQEALWALSNIASGGNEQ--  172 (252)
T ss_dssp             HHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS-----CHHHHHHHHHHHHHHTTSCHHH--
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCC-----CHHHHHHHHHHHHHHHcCChHH--
Confidence            9999999999999999999999999998887 8888999999999999764     3789999999999998754221  


Q ss_pred             cccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHH
Q 008257          159 ITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASI  238 (572)
Q Consensus       159 ~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~  238 (572)
                            ...+...|+++.|+++|.+++++++..++++|.+++...   +..+..+.+.|+++.|+.++.++++++|+.|+
T Consensus       173 ------~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~---~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~  243 (252)
T 4db8_A          173 ------IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG---NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQ  243 (252)
T ss_dssp             ------HHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSC---HHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHH
T ss_pred             ------HHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCC---HHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHH
Confidence                  124566899999999999999999999999999999754   35677888999999999999999999999999


Q ss_pred             HHHHHcCCC
Q 008257          239 ELIQNLSPH  247 (572)
Q Consensus       239 ~~L~~Ls~~  247 (572)
                      ++|.+|+.+
T Consensus       244 ~~L~~l~~~  252 (252)
T 4db8_A          244 EALEKLQSH  252 (252)
T ss_dssp             HHHHTTC--
T ss_pred             HHHHHHhcC
Confidence            999999853

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.93  E-value=2.4e-24  Score=209.15  Aligned_cols=243  Identities=20%  Similarity=0.285  Sum_probs=213.9

Q ss_pred             hhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChh
Q 008257          172 DIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHE  251 (572)
Q Consensus       172 ~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~  251 (572)
                      +.|+.|+++|.++++++|..++++|.+++....   +.+..+.+.|+++.|+.+|++++++++..|+++|.+++.+. .+
T Consensus         2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~---~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~   77 (252)
T 4hxt_A            2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPA---SAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP-DE   77 (252)
T ss_dssp             CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH---HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC-HH
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc---HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC-hH
Confidence            469999999999999999999999999998763   46788899999999999999999999999999999999773 34


Q ss_pred             HHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhH
Q 008257          252 LADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPF  331 (572)
Q Consensus       252 ~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~  331 (572)
                      ..+.+.+. |+++.|+++|.+++.  +++..|+++|++++..+++.++.+.+.|+++.|+.+|++          .+..+
T Consensus        78 ~~~~~~~~-~~i~~l~~ll~~~~~--~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~----------~~~~~  144 (252)
T 4hxt_A           78 AIKAIVDA-GGVEVLVKLLTSTDS--EVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS----------TDSEV  144 (252)
T ss_dssp             HHHHHHHT-THHHHHHHHTTCSSH--HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC----------SCHHH
T ss_pred             HHHHHHHC-CCHHHHHHHHcCCCH--HHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC----------CCHHH
Confidence            45567766 999999999998775  899999999999997788888999999999999999986          24677


Q ss_pred             HHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCcccc
Q 008257          332 LEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIF  411 (572)
Q Consensus       332 ~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~  411 (572)
                      ++.++++|.+++..   +++.++.+.+.|++|.|+++|.++ ++.++..|+++|.+++...+.                 
T Consensus       145 ~~~a~~~L~~l~~~---~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~-----------------  203 (252)
T 4hxt_A          145 QKEAARALANIASG---PDEAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPTS-----------------  203 (252)
T ss_dssp             HHHHHHHHHHHTTS---CHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSBHH-----------------
T ss_pred             HHHHHHHHHHHHcC---CHHHHHHHHHCcCHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCCHH-----------------
Confidence            89999999999963   778888899999999999999998 899999999999999853221                 


Q ss_pred             ccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCc
Q 008257          412 PCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGV  475 (572)
Q Consensus       412 ~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~  475 (572)
                                             ....+++.|+++.|++++++++++++..|+++|.+|..+..
T Consensus       204 -----------------------~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  244 (252)
T 4hxt_A          204 -----------------------AIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGW  244 (252)
T ss_dssp             -----------------------HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCB
T ss_pred             -----------------------HHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCC
Confidence                                   12236789999999999999999999999999999997654

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.93  E-value=5.4e-25  Score=214.30  Aligned_cols=237  Identities=23%  Similarity=0.288  Sum_probs=206.2

Q ss_pred             CCcHHHHHHHccCCHHHHHHHHHHHHHhcc-CcchhHHHHhhhH-HHHHHhcccCCHHHHHHHHHHHHHhhc-CCCcHHH
Q 008257           36 GRLQPLLTQILEGPQETKLSLAAFLGDLAL-NSDVKVLVARTVG-SCLINIMKSGNMQAREAALKALNQISS-CEPSAKV  112 (572)
Q Consensus        36 g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~-~~~~k~~i~~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~-~~~~~~~  112 (572)
                      ..++++++.|+++++++|..|+++|.++.. +++++..+.+.|+ |.|+++|++++++++..|+++|.+|+. +++++..
T Consensus        12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~   91 (252)
T 4db8_A           12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA   91 (252)
T ss_dssp             CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            458999999999999999999999987655 6777888888888 999999999999999999999999998 5677889


Q ss_pred             HHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHH
Q 008257          113 LIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKL  192 (572)
Q Consensus       113 iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a  192 (572)
                      +++.|++|+|+++|+++     ++.+++.|+++|+||+.+.....        ..+...|+++.|+++|.+++++++..+
T Consensus        92 i~~~g~i~~L~~lL~~~-----~~~v~~~a~~~L~~l~~~~~~~~--------~~~~~~~~i~~L~~lL~~~~~~v~~~a  158 (252)
T 4db8_A           92 VIDAGALPALVQLLSSP-----NEQILQEALWALSNIASGGNEQI--------QAVIDAGALPALVQLLSSPNEQILQEA  158 (252)
T ss_dssp             HHHTTHHHHHHHGGGCS-----CHHHHHHHHHHHHHHTTSCHHHH--------HHHHHTTHHHHHHHGGGCSCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHcCC-----CHHHHHHHHHHHHHhhcCCchHH--------HHHHHCCCHHHHHHHHhCCCHHHHHHH
Confidence            99999999999999874     37999999999999987543210        246678999999999999999999999


Q ss_pred             HHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhcc
Q 008257          193 LQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISE  272 (572)
Q Consensus       193 ~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~  272 (572)
                      +++|.+++..+.   ..+..+.+.|+++.|+.+|.++++.++..|+++|.+|+.+.+ +..+.+.+. |+++.|++++.+
T Consensus       159 ~~~L~~l~~~~~---~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~-g~i~~L~~ll~~  233 (252)
T 4db8_A          159 LWALSNIASGGN---EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-EQKQAVKEA-GALEKLEQLQSH  233 (252)
T ss_dssp             HHHHHHHTTSCH---HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCH-HHHHHHHHT-THHHHHHTTTTC
T ss_pred             HHHHHHHHcCCh---HHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCH-HHHHHHHHC-CcHHHHHHHhCC
Confidence            999999998753   466778899999999999999999999999999999997643 444566666 999999999999


Q ss_pred             CCCChHHHHHHHHHHhcCCC
Q 008257          273 NVGISKEQAAAVGLLAELPE  292 (572)
Q Consensus       273 ~~~~~~~~~~A~~~L~~L~~  292 (572)
                      ++.  +++..|+++|++|+.
T Consensus       234 ~~~--~v~~~A~~~L~~l~~  251 (252)
T 4db8_A          234 ENE--KIQKEAQEALEKLQS  251 (252)
T ss_dssp             SSS--HHHHTHHHHHHTTC-
T ss_pred             CCH--HHHHHHHHHHHHHhc
Confidence            886  999999999999975

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.91  E-value=2.4e-24  Score=204.39  Aligned_cols=194  Identities=16%  Similarity=0.165  Sum_probs=165.0

Q ss_pred             CcHHHHHHHccCCH--HHHHHHHHHHHHhcc-CcchhHHHHhhhH-HHHHHhcccCCHHHHHHHHHHHHHhhc-CCCcHH
Q 008257           37 RLQPLLTQILEGPQ--ETKLSLAAFLGDLAL-NSDVKVLVARTVG-SCLINIMKSGNMQAREAALKALNQISS-CEPSAK  111 (572)
Q Consensus        37 ~i~~Lv~~L~~~~~--~~~~~aa~~L~~l~~-~~~~k~~i~~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~-~~~~~~  111 (572)
                      .+++|+++|+++++  ++|..|+++|.+++. ++++|..|.+.|+ |+||++|+++++++|+.|+++|+||+. +++|+.
T Consensus         9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~   88 (233)
T 3tt9_A            9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL   88 (233)
T ss_dssp             CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence            57999999999988  889999999999997 7789999998888 999999999999999999999999998 578899


Q ss_pred             HHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHh---------
Q 008257          112 VLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLIS---------  182 (572)
Q Consensus       112 ~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~---------  182 (572)
                      .|+++|+||+|+++|++.    .+.++++.|+.+|+||+.++..         ...+. +++|++|++++.         
T Consensus        89 ~I~~~GaI~~Lv~lL~~~----~~~~~~e~a~~aL~nLS~~~~~---------k~~i~-~~~i~~Lv~ll~~p~sG~~~~  154 (233)
T 3tt9_A           89 EVAELNGVPRLLQVLKQT----RDLETKKQITGLLWNLSSNDKL---------KNLMI-TEALLTLTENIIIPFSGWPEG  154 (233)
T ss_dssp             HHHHTTHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHTSGGG---------HHHHH-HHHHHHHCCCCCHHHHCCCGG
T ss_pred             HHHHcCCHHHHHHHHccC----CCHHHHHHHHHHHHHHHcChhh---------HHHHH-hccHHHHHHHHhccccCCccc
Confidence            999999999999999852    1378999999999999875422         12344 457999998763         


Q ss_pred             -------cCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcC-ChHHHHHHhcCC------CHHHHHHHHHHHHHcCCC
Q 008257          183 -------NTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSG-ATISLVQFVEAP------QNDLRLASIELIQNLSPH  247 (572)
Q Consensus       183 -------~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g-~i~~Lv~lL~~~------~~~v~~~a~~~L~~Ls~~  247 (572)
                             +.+++++.++..+|++|+...   ++.|+.|++++ +|+.||.+++..      +...+++|+++|+||+..
T Consensus       155 ~~~~~~~~~~~~v~~na~~~L~nLss~~---~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          155 DYPKANGLLDFDIFYNVTGCLRNMSSAG---ADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             GCCCCCTTCCHHHHHHHHHHHHHHTTSC---HHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             ccccccccchHHHHHHHHHHHHHHhcCC---HHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence                   125689999999999999864   36799999875 579999999853      457899999999999965

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.90  E-value=1e-22  Score=192.39  Aligned_cols=198  Identities=23%  Similarity=0.280  Sum_probs=173.1

Q ss_pred             HcCCcHHHHHHHccCCHHHHHHHHHHHHHhcc-CcchhHHHHhhhH-HHHHHhcccCCHHHHHHHHHHHHHhhc-CCCcH
Q 008257           34 ENGRLQPLLTQILEGPQETKLSLAAFLGDLAL-NSDVKVLVARTVG-SCLINIMKSGNMQAREAALKALNQISS-CEPSA  110 (572)
Q Consensus        34 ~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~-~~~~k~~i~~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~-~~~~~  110 (572)
                      ..|..++|+.+|+++++++|..|+++|.+++. +++++..+.+.|+ |.|+++|+++++++++.|+++|.+|+. +++++
T Consensus        10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~   89 (210)
T 4db6_A           10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI   89 (210)
T ss_dssp             ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence            56788999999999999999999999999996 6678888888888 999999999999999999999999996 55678


Q ss_pred             HHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHH
Q 008257          111 KVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIEC  190 (572)
Q Consensus       111 ~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~  190 (572)
                      ..+++.|++|+|+++|+++     ++.+++.|+++|+||+.+..+..        ..+...|+++.|+++|++++++++.
T Consensus        90 ~~i~~~g~i~~L~~lL~~~-----~~~v~~~a~~~L~~l~~~~~~~~--------~~~~~~~~i~~L~~ll~~~~~~v~~  156 (210)
T 4db6_A           90 QAVIDAGALPALVQLLSSP-----NEQILQEALWALSNIASGGNEQI--------QAVIDAGALPALVQLLSSPNEQILQ  156 (210)
T ss_dssp             HHHHHTTCHHHHHHHTTCS-----CHHHHHHHHHHHHHHTTSCHHHH--------HHHHHTTHHHHHHHHTTCSCHHHHH
T ss_pred             HHHHHCCCHHHHHHHHcCC-----cHHHHHHHHHHHHHHHcCCHHHH--------HHHHHcCcHHHHHHHHcCCCHHHHH
Confidence            8899999999999999864     38999999999999987543211        2456789999999999999999999


Q ss_pred             HHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 008257          191 KLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPH  247 (572)
Q Consensus       191 ~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~  247 (572)
                      .++++|.+++....   ..+..+.+.|+++.|+.++.++++++|+.|+++|.+|+.+
T Consensus       157 ~a~~aL~~l~~~~~---~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  210 (210)
T 4db6_A          157 EALWALSNIASGGN---EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH  210 (210)
T ss_dssp             HHHHHHHHHHTSCH---HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC-
T ss_pred             HHHHHHHHHHcCCc---HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhcC
Confidence            99999999998753   5678889999999999999999999999999999999853

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.89  E-value=1.4e-21  Score=184.67  Aligned_cols=200  Identities=18%  Similarity=0.202  Sum_probs=176.9

Q ss_pred             hhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC
Q 008257          170 SEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMG  249 (572)
Q Consensus       170 ~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~  249 (572)
                      ..+..+.|+.+|.+++++++..|+++|.+++..+.   +.+..+.+.|+++.|+.+|++++++++..|+++|.+++.+.+
T Consensus        10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~---~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~   86 (210)
T 4db6_A           10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGN---EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN   86 (210)
T ss_dssp             ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH---HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred             ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCH---HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc
Confidence            35789999999999999999999999999997653   567888999999999999999999999999999999997643


Q ss_pred             hhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchh
Q 008257          250 HELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVT  329 (572)
Q Consensus       250 ~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~  329 (572)
                       +..+.+.+. |+++.|+.+|.+++.  .++..|+++|++++.++++..+.+++.|++|.|+.+|++          .+.
T Consensus        87 -~~~~~i~~~-g~i~~L~~lL~~~~~--~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~----------~~~  152 (210)
T 4db6_A           87 -EQIQAVIDA-GALPALVQLLSSPNE--QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS----------PNE  152 (210)
T ss_dssp             -HHHHHHHHT-TCHHHHHHHTTCSCH--HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC----------SCH
T ss_pred             -HHHHHHHHC-CCHHHHHHHHcCCcH--HHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcC----------CCH
Confidence             344566666 999999999999885  899999999999998888888889999999999999986          245


Q ss_pred             hHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhh
Q 008257          330 PFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSL  390 (572)
Q Consensus       330 ~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~  390 (572)
                      .+++.++++|.+++..   +++.+..+.+.|++|.|++++.++ ++.+|+.|+++|.+++.
T Consensus       153 ~v~~~a~~aL~~l~~~---~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          153 QILQEALWALSNIASG---GNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             HHHHHHHHHHHHHHTS---CHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHcC---CcHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHhc
Confidence            7789999999999963   688999999999999999999998 99999999999999874

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.88  E-value=9.5e-23  Score=193.39  Aligned_cols=192  Identities=15%  Similarity=0.221  Sum_probs=162.3

Q ss_pred             CCCCCCCH--HHHHHHHHHHHhhcc-CcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhcc-CcchhHHHHhhh
Q 008257            2 TSSKSENL--LTVEKAEKTLANLEK-CENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLAL-NSDVKVLVARTV   77 (572)
Q Consensus         2 ~~~~s~~~--~~~~~A~~~L~~L~~-~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~-~~~~k~~i~~~g   77 (572)
                      .+++|+|+  .++..|+..|.+|+. +++++..+++.|+||+|+++|+++++++|..|+++|.+++. ++++|..|.+.|
T Consensus        15 ~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~G   94 (233)
T 3tt9_A           15 SMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELN   94 (233)
T ss_dssp             HTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence            36788888  888999999999996 78899999999999999999999999999999999999998 678999999998


Q ss_pred             H-HHHHHhcc-cCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHh---ccCC--------CCCCcchHHHHHH
Q 008257           78 G-SCLINIMK-SGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLF---TVGS--------NHLPMRLKEVSAT  144 (572)
Q Consensus        78 ~-~~Lv~lL~-s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~---s~~~--------~~~~~~~~~~aa~  144 (572)
                      + |+||++|+ +++.++|+.|+.+|++|+..++++..|++. +||+|++++.   ++..        ...+++++++|+.
T Consensus        95 aI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~  173 (233)
T 3tt9_A           95 GVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTG  173 (233)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHH
T ss_pred             CHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHHHHHHHHH
Confidence            8 99999998 578999999999999999999999998874 6999999763   1110        0123689999999


Q ss_pred             HHHHHHhcCCCCCccccCCCccccch-hhhHHHHHHHHhcC------ChhHHHHHHHHHHHccCC
Q 008257          145 ILANVVNSGHDFDSITVGPDNQTLVS-EDIVHNLLHLISNT------GPTIECKLLQVLVGLTSS  202 (572)
Q Consensus       145 ~L~nla~~~~~~~~~~~~~~~~~l~~-~~~i~~Lv~lL~~~------~~~~q~~a~~aL~~l~~~  202 (572)
                      +|.||+..+.+.+        +.|.. .|.|+.|+.+++..      +...+++++.+|++|+..
T Consensus       174 ~L~nLss~~~~~R--------~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          174 CLRNMSSAGADGR--------KAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHTTSCHHHH--------HHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHhcCCHHHH--------HHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            9999987543222        34443 57899999999852      557899999999999864

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.87  E-value=1.3e-20  Score=186.62  Aligned_cols=227  Identities=16%  Similarity=0.174  Sum_probs=179.9

Q ss_pred             HHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHh-hhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHH
Q 008257          231 NDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIR-VISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGL  309 (572)
Q Consensus       231 ~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~-lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~  309 (572)
                      .+-+..|+..|.+++...  +.+..+... |+++.|+. +|.+++.  .++..|+++|++++.+++..++.+++.|++|+
T Consensus        54 ~e~k~~Al~~L~~lv~~~--dna~~~~~~-G~l~~Lv~~lL~s~~~--~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~  128 (296)
T 1xqr_A           54 QQEREGALELLADLCENM--DNAADFCQL-SGMHLLVGRYLEAGAA--GLRWRAAQLIGTCSQNVAAIQEQVLGLGALRK  128 (296)
T ss_dssp             HHHHHHHHHHHHHHHTSH--HHHHHHHHT-THHHHHHHTTTTCSSH--HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred             HHHHHHHHHHHHHHHhCh--hhHHHHHHc-CCHHHHHHHHHcCCCH--HHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHH
Confidence            457888899999988653  233456666 99999999 9999885  99999999999999988999999999999999


Q ss_pred             HHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhh
Q 008257          310 IFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLS  389 (572)
Q Consensus       310 Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls  389 (572)
                      |+.+|++.         ....+++.|+++|++++.+   ++..++.+.+.|++|+|+.+|+++ ++.+|+.|+|+|.+++
T Consensus       129 Ll~LL~~~---------~~~~v~~~A~~ALsnl~~~---~~~~~~~~~~~ggi~~L~~lL~~~-d~~v~~~A~~aLs~L~  195 (296)
T 1xqr_A          129 LLRLLDRD---------ACDTVRVKALFAISCLVRE---QEAGLLQFLRLDGFSVLMRAMQQQ-VQKLKVKSAFLLQNLL  195 (296)
T ss_dssp             HHHHHHHC---------SCHHHHHHHHHHHHHHHTT---CHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHccC---------CCHHHHHHHHHHHHHHHcC---CcHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHH
Confidence            99999852         1356789999999999964   788888899999999999999998 9999999999999998


Q ss_pred             hhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHH
Q 008257          390 LESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALST  469 (572)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~  469 (572)
                      ...+.                                        ..-.+++.|++++|++||.++++.+++.|+++|++
T Consensus       196 ~~~~~----------------------------------------~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~  235 (296)
T 1xqr_A          196 VGHPE----------------------------------------HKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCS  235 (296)
T ss_dssp             HHCGG----------------------------------------GHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHH
T ss_pred             hCChH----------------------------------------HHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHH
Confidence            75321                                        22247899999999999999999999999999999


Q ss_pred             hhhcCccchhhHHHHHhcC--ChHH----HHHHHhhcC-CHHHHHHHHHHHHHHHcc
Q 008257          470 VIDDGVDIEQGVMVLCEAQ--GIKP----ILDVLLEKR-TENLQRRAVWVVERILRT  519 (572)
Q Consensus       470 l~~~~~~~~~~~~~i~~~g--~i~~----L~~lL~~~~-~~~~~~~a~~~l~~l~~~  519 (572)
                      |+.+..   ...... ..+  .+..    -.+-++.+. ++++++++..++.++|..
T Consensus       236 l~~~~~---~~~~~~-~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~~  288 (296)
T 1xqr_A          236 LVTDFP---QGVREC-REPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFSS  288 (296)
T ss_dssp             HHTTCH---HHHHHH-HCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC-
T ss_pred             HHhCCh---hHHHHH-hccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcCC
Confidence            997632   111111 111  1211    123333233 478889999999999854

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.85  E-value=1.2e-20  Score=186.86  Aligned_cols=182  Identities=18%  Similarity=0.185  Sum_probs=160.9

Q ss_pred             HHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHH-HHccCCHHHHHHHHHHHHHhcc-CcchhHHHHhhhH-HHHHHhc
Q 008257            9 LLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLT-QILEGPQETKLSLAAFLGDLAL-NSDVKVLVARTVG-SCLINIM   85 (572)
Q Consensus         9 ~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~-~L~~~~~~~~~~aa~~L~~l~~-~~~~k~~i~~~g~-~~Lv~lL   85 (572)
                      .+....|...|.++..+.+|...+.+.|++++|+. +|+++++++|..|+++|++++. ++.++..+.+.|+ |+|+++|
T Consensus        54 ~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL  133 (296)
T 1xqr_A           54 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL  133 (296)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence            35677899999999998889999999999999999 9999999999999999999998 5567888888888 9999999


Q ss_pred             ccC-CHHHHHHHHHHHHHhhcCCC-cHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCC
Q 008257           86 KSG-NMQAREAALKALNQISSCEP-SAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGP  163 (572)
Q Consensus        86 ~s~-~~~~~~~A~~aL~~Ls~~~~-~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~  163 (572)
                      +++ +..+++.|+++|.+|+.+.+ ..+.++++|++|+|+.+|+++     +..+|..|+|+|.+++.++.+..      
T Consensus       134 ~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~-----d~~v~~~A~~aLs~L~~~~~~~~------  202 (296)
T 1xqr_A          134 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ-----VQKLKVKSAFLLQNLLVGHPEHK------  202 (296)
T ss_dssp             HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS-----CHHHHHHHHHHHHHHHHHCGGGH------
T ss_pred             ccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCC-----CHHHHHHHHHHHHHHHhCChHHH------
Confidence            974 78999999999999997654 467788999999999999874     38999999999999998643222      


Q ss_pred             CccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCC
Q 008257          164 DNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSP  203 (572)
Q Consensus       164 ~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~  203 (572)
                        ..+.+.|++++|+.+|.+++++++..++++|.++....
T Consensus       203 --~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~  240 (296)
T 1xqr_A          203 --GTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDF  240 (296)
T ss_dssp             --HHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred             --HHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCC
Confidence              35778999999999999999999999999999999874

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.78  E-value=1e-16  Score=169.35  Aligned_cols=398  Identities=13%  Similarity=0.126  Sum_probs=273.3

Q ss_pred             hhHHHHHHhcccCC-HHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCC
Q 008257           76 TVGSCLINIMKSGN-MQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGH  154 (572)
Q Consensus        76 ~g~~~Lv~lL~s~~-~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~  154 (572)
                      +.++.|++-|.+.. .+-|+.|+..|+.++...   ..-|-++|+|.|+..|+...   .+.++-..+.++|.++...+.
T Consensus        21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y---~~~Vg~~~l~~li~~L~~d~---~D~e~v~~~LetL~~l~~~~~   94 (651)
T 3grl_A           21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSKKY---RLEVGIQAMEHLIHVLQTDR---SDSEIIGYALDTLYNIISNDE   94 (651)
T ss_dssp             HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTT---TTHHHHHTHHHHHHHHHSCT---TCHHHHHHHHHHHHHHHCCC-
T ss_pred             hHHHHHHHHHhhccchhHHHHHHHHHHHHHHHh---HHHhhhhhHHHHHHHHhccc---ccHHHHHHHHHHHHHHhCCCC
Confidence            34588888888754 678999999999998642   24567899999999998753   347788889999999865432


Q ss_pred             CCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHH-HHHhcCChHHHHHHhcCCCHHH
Q 008257          155 DFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVS-AIKSSGATISLVQFVEAPQNDL  233 (572)
Q Consensus       155 ~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~-~i~~~g~i~~Lv~lL~~~~~~v  233 (572)
                      +.+......                   ....++.   .              .+.+ .+.+.++|+.|+.+|+..+..+
T Consensus        95 ~~~~~~~~~-------------------~~~~~~~---~--------------~~~d~f~~~~~~i~~Ll~lL~~~df~v  138 (651)
T 3grl_A           95 EEEVEENST-------------------RQSEDLG---S--------------QFTEIFIKQQENVTLLLSLLEEFDFHV  138 (651)
T ss_dssp             --------------------------------CHH---H--------------HHHHHHHHSTHHHHHHHHHTTCCCHHH
T ss_pred             ccccccccc-------------------ccchHHH---H--------------HHHHHHHcCCccHHHHHHHhcCccHHH
Confidence            211000000                   0001110   1              1112 2346789999999999999999


Q ss_pred             HHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHH
Q 008257          234 RLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSR  313 (572)
Q Consensus       234 ~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~l  313 (572)
                      |.+++.+|..|+.+.+...++.|...+++++.||.+|+.+.+  .+|..|+.+|.+|+.++.++++.+.-+|++++|+++
T Consensus       139 R~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE--~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~I  216 (651)
T 3grl_A          139 RWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSRE--VIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDI  216 (651)
T ss_dssp             HHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSH--HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchH--HHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHH
Confidence            999999999999876666888888666999999999998875  899999999999999999998888899999999999


Q ss_pred             HhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcH-----HHH-HHHHHHHHH
Q 008257          314 VKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLD-----KVQ-MVSATALEN  387 (572)
Q Consensus       314 L~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~-----~vk-~~Aa~aL~~  387 (572)
                      ++...  ..+    .-.+.+.++..|.++...   |+.+|..+++.|.+|.|..+|+.+ .+     .-| .+...++. 
T Consensus       217 i~~Eg--~~~----Ggivv~DCL~ll~nLLr~---N~sNQ~~FrEt~~i~~L~~LL~~~-~~~~~W~~Qk~~N~~~~L~-  285 (651)
T 3grl_A          217 ITEEG--NSD----GGIVVEDCLILLQNLLKN---NNSNQNFFKEGSYIQRMKPWFEVG-DENSGWSAQKVTNLHLMLQ-  285 (651)
T ss_dssp             HHHHT--GGG----SHHHHHHHHHHHHHHHTT---CHHHHHHHHHTTCGGGGGGGGCCC-SCSSCCCHHHHHHHHHHHH-
T ss_pred             HHhcC--CCc----cchhHHHHHHHHHHHHhc---CHHHHHHHHHcCCHHHHHHHhCCC-ccccccHHHHHHHHHHHHH-
Confidence            98742  122    234577899999999874   999999999999999999999864 21     112 12111111 


Q ss_pred             hhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCC--CHhHHHHHHH
Q 008257          388 LSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHT--NEKVVEASLA  465 (572)
Q Consensus       388 ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~--~~~v~~~A~~  465 (572)
                      +                      ++.|..+..     +..   .+..++..+.+.|++++|++++.+.  ...++..|+.
T Consensus       286 i----------------------IrlLv~~~~-----~~~---~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~  335 (651)
T 3grl_A          286 L----------------------VRVLVSPNN-----PPG---ATSSCQKAMFQCGLLQQLCTILMATGVPADILTETIN  335 (651)
T ss_dssp             H----------------------HHHHTCTTS-----CHH---HHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred             H----------------------HHHHhCCCC-----CCC---CCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHH
Confidence            1                      111100000     000   0113455677999999999999865  6789999999


Q ss_pred             HHHHhhhcCccchhhHHHHHhcC-----ChHHHHHH----HhhcCCHHHHHHHHHHHHHHH-cchhhhhhhcC----C--
Q 008257          466 ALSTVIDDGVDIEQGVMVLCEAQ-----GIKPILDV----LLEKRTENLQRRAVWVVERIL-RTDDIAYEVSG----D--  529 (572)
Q Consensus       466 aL~~l~~~~~~~~~~~~~i~~~g-----~i~~L~~l----L~~~~~~~~~~~a~~~l~~l~-~~~~~~~~~~~----~--  529 (572)
                      +++.+..+..   ..++.+.+..     ..+.++.+    +.+.....+|..|+.++..++ ++++.+.++..    .  
T Consensus       336 tla~~irgN~---~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~  412 (651)
T 3grl_A          336 TVSEVIRGCQ---VNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTI  412 (651)
T ss_dssp             HHHHHHTTCH---HHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCC
T ss_pred             HHHHHHhCCH---HHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCccc
Confidence            9999987654   4455665543     34455554    444556888999999999998 44433322221    0  


Q ss_pred             ----CCch--HHHHHHhhcCCchhHHHHHHHHHhhccc
Q 008257          530 ----PNVS--TALVDAFQHADYRTRQIAERALKHIDKI  561 (572)
Q Consensus       530 ----~~~~--~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~  561 (572)
                          ..+.  ..|.+-+.+.|+-----|+.+|.++-+.
T Consensus       413 ~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~  450 (651)
T 3grl_A          413 DATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQE  450 (651)
T ss_dssp             CCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTT
T ss_pred             ccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcC
Confidence                1121  2355666667763333588888887664

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.78  E-value=1.2e-16  Score=174.28  Aligned_cols=334  Identities=11%  Similarity=0.084  Sum_probs=226.3

Q ss_pred             CCCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhH-HHHHH
Q 008257            5 KSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVG-SCLIN   83 (572)
Q Consensus         5 ~s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~Lv~   83 (572)
                      +++++.+++.|..+|.++...-.. .. ...-.++.+..+..+.+...|..++..+..++..-..  .. ...+ |.|..
T Consensus        97 ~~~~~~vR~~a~~~L~~l~~~~~~-~~-~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~--~~-~~~l~~~l~~  171 (588)
T 1b3u_A           97 TVEETVVRDKAVESLRAISHEHSP-SD-LEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSS--AV-KAELRQYFRN  171 (588)
T ss_dssp             TSSCHHHHHHHHHHHHHHHTTSCH-HH-HHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCH--HH-HHHHHHHHHH
T ss_pred             hCchHHHHHHHHHHHHHHHHHCCH-HH-HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCH--HH-HHHHHHHHHH
Confidence            456777777777777777653211 11 1112233333444555666777777777776542211  11 2234 88889


Q ss_pred             hcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCC
Q 008257           84 IMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGP  163 (572)
Q Consensus        84 lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~  163 (572)
                      +++.+++.+|..|+.+|..++..-...  ......+|.|..++...     ...+|..|+.+|..++.....        
T Consensus       172 l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~-----~~~vr~~a~~~l~~l~~~~~~--------  236 (588)
T 1b3u_A          172 LCSDDTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDE-----QDSVRLLAVEACVNIAQLLPQ--------  236 (588)
T ss_dssp             HHTCSCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCS-----CHHHHTTHHHHHHHHHHHSCH--------
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcCC-----cHHHHHHHHHHHHHHHHhCCH--------
Confidence            999999999999999999998654322  23456788888888643     378999999999999864221        


Q ss_pred             CccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHH
Q 008257          164 DNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQN  243 (572)
Q Consensus       164 ~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~  243 (572)
                         ....+.++|.+..++.++++.++..++.+|..++.....  +    ......++.++.+++++++++|..|+++|..
T Consensus       237 ---~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~  307 (588)
T 1b3u_A          237 ---EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--E----ITKTDLVPAFQNLMKDCEAEVRAAASHKVKE  307 (588)
T ss_dssp             ---HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--H----HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--c----cchhHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence               112345788888888888999999999999988754211  1    1124568999999999999999999999999


Q ss_pred             cCCCCChhHHH-HHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCC
Q 008257          244 LSPHMGHELAD-ALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGET  322 (572)
Q Consensus       244 Ls~~~~~~~~~-~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~  322 (572)
                      ++...+.+... ....  ..+|.+..++.+++.  .+|..++.+|..++..-.   ........+|.+..++++      
T Consensus       308 ~~~~~~~~~~~~~~~~--~l~p~l~~~l~d~~~--~vR~~a~~~l~~l~~~~~---~~~~~~~l~p~l~~~l~d------  374 (588)
T 1b3u_A          308 FCENLSADCRENVIMS--QILPCIKELVSDANQ--HVKSALASVIMGLSPILG---KDNTIEHLLPLFLAQLKD------  374 (588)
T ss_dssp             HHHTSCTTTHHHHHHH--THHHHHHHHHTCSCH--HHHHHHHTTGGGGHHHHC---HHHHHHHTHHHHHHHHTC------
T ss_pred             HHHHhChhhhhhHHHH--HHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHHhh---HhHHHHHHHHHHHHHhCC------
Confidence            88654333211 1222  467888888887774  899999999988854111   111223467888888875      


Q ss_pred             CCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhh
Q 008257          323 RGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLE  391 (572)
Q Consensus       323 ~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~  391 (572)
                          .+..++..++.+|..+....  .++.    ....++|.|.++++++ +..+|..++.++..++..
T Consensus       375 ----~~~~Vr~~a~~~l~~l~~~~--~~~~----~~~~~lp~l~~~~~d~-~~~vr~~~~~~l~~l~~~  432 (588)
T 1b3u_A          375 ----ECPEVRLNIISNLDCVNEVI--GIRQ----LSQSLLPAIVELAEDA-KWRVRLAIIEYMPLLAGQ  432 (588)
T ss_dssp             ----SCHHHHHHHHTTCHHHHHHS--CHHH----HHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHH
T ss_pred             ----CchHHHHHHHHHHHHHHHhc--CHHH----HHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHH
Confidence                24567778887777766431  2221    2235789999999887 889999999999988753

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.77  E-value=5.3e-17  Score=177.20  Aligned_cols=451  Identities=12%  Similarity=0.112  Sum_probs=311.1

Q ss_pred             CCCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhH-HHHHH
Q 008257            5 KSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVG-SCLIN   83 (572)
Q Consensus         5 ~s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~Lv~   83 (572)
                      +++++..+..|..++..+...-..  .. ....++.+..++++.++.+|..++.+|+.++..-.... . ...+ |.|..
T Consensus       136 ~~~~~~~R~~a~~~l~~~~~~~~~--~~-~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~-~-~~~l~~~l~~  210 (588)
T 1b3u_A          136 GGDWFTSRTSACGLFSVCYPRVSS--AV-KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDN-V-KSEIIPMFSN  210 (588)
T ss_dssp             TCSSHHHHHHHGGGHHHHTTTSCH--HH-HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHH-H-HHTHHHHHHH
T ss_pred             cCCCcHHHHHHHHHHHHHHHhcCH--HH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHh-H-HHHHHHHHHH
Confidence            456667777777777777653211  11 22346677788889999999999999999876322211 1 2345 99999


Q ss_pred             hcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCC
Q 008257           84 IMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGP  163 (572)
Q Consensus        84 lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~  163 (572)
                      ++++++..+|..|+.+|..++..-+.  .......+|.+.+++...     +..+|..|+.+|+.++....         
T Consensus       211 ~~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~~~d~-----~~~vR~~a~~~l~~l~~~~~---------  274 (588)
T 1b3u_A          211 LASDEQDSVRLLAVEACVNIAQLLPQ--EDLEALVMPTLRQAAEDK-----SWRVRYMVADKFTELQKAVG---------  274 (588)
T ss_dssp             HHTCSCHHHHTTHHHHHHHHHHHSCH--HHHHHHTHHHHHHHHTCS-----SHHHHHHHHHTHHHHHHHHC---------
T ss_pred             HhcCCcHHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHccCC-----CHHHHHHHHHHHHHHHHHhC---------
Confidence            99999999999999999999864322  123345788888888643     37899999999999986321         


Q ss_pred             CccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHH
Q 008257          164 DNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQN  243 (572)
Q Consensus       164 ~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~  243 (572)
                        ........++.++.++++++++++..++.+|..++.....  ..+....-...+|.+..+++++++.+|..++++|..
T Consensus       275 --~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~--~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~  350 (588)
T 1b3u_A          275 --PEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSA--DCRENVIMSQILPCIKELVSDANQHVKSALASVIMG  350 (588)
T ss_dssp             --HHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCT--TTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGG
T ss_pred             --cccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCh--hhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence              0112345789999999999999999999999988765322  111111124567888999999999999999999998


Q ss_pred             cCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCC
Q 008257          244 LSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETR  323 (572)
Q Consensus       244 Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~  323 (572)
                      ++...+.+.   ...  ..+|.+..++..+++  +++..++..+..+...-..   .......+|.|..++.+.      
T Consensus       351 l~~~~~~~~---~~~--~l~p~l~~~l~d~~~--~Vr~~a~~~l~~l~~~~~~---~~~~~~~lp~l~~~~~d~------  414 (588)
T 1b3u_A          351 LSPILGKDN---TIE--HLLPLFLAQLKDECP--EVRLNIISNLDCVNEVIGI---RQLSQSLLPAIVELAEDA------  414 (588)
T ss_dssp             GHHHHCHHH---HHH--HTHHHHHHHHTCSCH--HHHHHHHTTCHHHHHHSCH---HHHHHHHHHHHHHHHTCS------
T ss_pred             HHHHhhHhH---HHH--HHHHHHHHHhCCCch--HHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHhcCC------
Confidence            875433331   122  367888999987664  8888888777665431100   011234667777777541      


Q ss_pred             CCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCC
Q 008257          324 GSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPP  403 (572)
Q Consensus       324 ~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~  403 (572)
                          ...++..++.+|..++..+  .++    .....++|.+..+|.++ +..+|+.|+.++..++...+.         
T Consensus       415 ----~~~vr~~~~~~l~~l~~~~--~~~----~~~~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~---------  474 (588)
T 1b3u_A          415 ----KWRVRLAIIEYMPLLAGQL--GVE----FFDEKLNSLCMAWLVDH-VYAIREAATSNLKKLVEKFGK---------  474 (588)
T ss_dssp             ----SHHHHHHHHHHHHHHHHHH--CGG----GCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCH---------
T ss_pred             ----CchHHHHHHHHHHHHHHHc--CHH----HHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhCc---------
Confidence                3345677777777776321  111    11123578999999988 899999999999988753210         


Q ss_pred             CCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHH
Q 008257          404 SGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMV  483 (572)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~  483 (572)
                                                      .+  .....+|.|++++.+++..++..++.+++.++..-     +...
T Consensus       475 --------------------------------~~--~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~-----~~~~  515 (588)
T 1b3u_A          475 --------------------------------EW--AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVC-----GQDI  515 (588)
T ss_dssp             --------------------------------HH--HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHH-----HHHH
T ss_pred             --------------------------------hh--HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhc-----CHHH
Confidence                                            01  12347788889999999999999999999998531     1111


Q ss_pred             HHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcchhhhhhhcCCCCchHHHHHHhhcCCchhHHHHHHHHHhhcc
Q 008257          484 LCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHIDK  560 (572)
Q Consensus       484 i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~~  560 (572)
                       .....++.|+.++ .++++.+|..+++++..++..-..  .+.. ..+.+.|.+++.+.|.++|..|+.||..+..
T Consensus       516 -~~~~~~~~l~~~l-~d~~~~Vr~~a~~~l~~l~~~~~~--~~~~-~~~~p~l~~l~~d~d~~vr~~a~~al~~l~~  587 (588)
T 1b3u_A          516 -TTKHMLPTVLRMA-GDPVANVRFNVAKSLQKIGPILDN--STLQ-SEVKPILEKLTQDQDVDVKYFAQEALTVLSL  587 (588)
T ss_dssp             -HHHHTHHHHHHGG-GCSCHHHHHHHHHHHHHHGGGSCH--HHHH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTTC
T ss_pred             -HHHHHHHHHHhhC-CCCCchHHHHHHHHHHHHHHHhch--hhhH-HHHHHHHHHHcCCCchhHHHHHHHHHHHhhc
Confidence             2234678888888 588899999999999999864110  1111 1233467788889999999999999998763

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.77  E-value=3.2e-15  Score=158.13  Aligned_cols=472  Identities=12%  Similarity=0.094  Sum_probs=316.4

Q ss_pred             CcHHHHHHHccCC-HHHHHHHHHHHHHhccCcchhHHHHhhhHHHHHHhccc--CCHHHHHHHHHHHHHhhcCCCc----
Q 008257           37 RLQPLLTQILEGP-QETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMKS--GNMQAREAALKALNQISSCEPS----  109 (572)
Q Consensus        37 ~i~~Lv~~L~~~~-~~~~~~aa~~L~~l~~~~~~k~~i~~~g~~~Lv~lL~s--~~~~~~~~A~~aL~~Ls~~~~~----  109 (572)
                      .|+.|+.+++++. .+-|+.|...|..++.  +++..++..|.+.|++.|+.  ++.+....++..|.++...++.    
T Consensus        22 tI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk--~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~   99 (651)
T 3grl_A           22 TIQKLCDRVASSTLLDDRRNAVRALKSLSK--KYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVE   99 (651)
T ss_dssp             HHHHHHHHHHHCCSHHHHHHHHHHHHHTTT--TTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC------
T ss_pred             HHHHHHHHHhhccchhHHHHHHHHHHHHHH--HhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCccccc
Confidence            5789999998775 6778899899988864  67778887788999999987  4778889999999887764321    


Q ss_pred             --------------HHHHH-HcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCC-CCccccCCCccccchhhh
Q 008257          110 --------------AKVLI-HAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHD-FDSITVGPDNQTLVSEDI  173 (572)
Q Consensus       110 --------------~~~iv-~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~-~~~~~~~~~~~~l~~~~~  173 (572)
                                    .+.++ +.+.|+.|+.+|.+.     +..+|.++...|..|+.+... .++       .++...++
T Consensus       100 ~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~-----df~vR~~alqlL~~L~~~r~~~~Q~-------~Il~~p~g  167 (651)
T 3grl_A          100 ENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEF-----DFHVRWPGVKLLTSLLKQLGPQVQQ-------IILVSPMG  167 (651)
T ss_dssp             --------CHHHHHHHHHHHSTHHHHHHHHHTTCC-----CHHHHHHHHHHHHHHHHHSHHHHHH-------HHHHSTTH
T ss_pred             ccccccchHHHHHHHHHHHcCCccHHHHHHHhcCc-----cHHHHHHHHHHHHHHHhcCcHHHHH-------HHHhCccc
Confidence                          22333 789999999999864     378999999999999976543 111       12345689


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCH----HHHHHHHHHHHHcCCCCC
Q 008257          174 VHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQN----DLRLASIELIQNLSPHMG  249 (572)
Q Consensus       174 i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~----~v~~~a~~~L~~Ls~~~~  249 (572)
                      |+.|+.+|++....+|..++..|..++.++.   ++++.+.-.|+++.|+.+++.+..    .+.+.++.+|.+|.+++ 
T Consensus       168 i~~Lv~lL~d~rE~iRneallLL~~Lt~~n~---~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N-  243 (651)
T 3grl_A          168 VSRLMDLLADSREVIRNDGVLLLQALTRSNG---AIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNN-  243 (651)
T ss_dssp             HHHHHGGGGCSSHHHHHHHHHHHHHHHTTCH---HHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHhCchHHHHHHHHHHHHHHhcCCH---HHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcC-
Confidence            9999999999999999999999999999874   688888889999999999987554    78999999999999884 


Q ss_pred             hhHHHHHhcccCChhhHHhhhccCCC---ChHHH----HHHHHHHhcCCCC------cHHHHHHHHhCCChHHHHHHHhh
Q 008257          250 HELADALRGAVGQLGSLIRVISENVG---ISKEQ----AAAVGLLAELPER------DLGLTRQMLDEGAFGLIFSRVKS  316 (572)
Q Consensus       250 ~~~~~~i~~~~g~l~~Lv~lL~~~~~---~~~~~----~~A~~~L~~L~~~------~~~~~~~l~~~g~l~~Lv~lL~~  316 (572)
                      ...+..+++. |+++.|..+|..+.+   |.+.+    ..++.+++-|...      ...++..+.+.|+++.|++++..
T Consensus       244 ~sNQ~~FrEt-~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~  322 (651)
T 3grl_A          244 NSNQNFFKEG-SYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMA  322 (651)
T ss_dssp             HHHHHHHHHT-TCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTC
T ss_pred             HHHHHHHHHc-CCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHcc
Confidence            3445678888 999999999986543   32222    2245566666554      34567899999999999999976


Q ss_pred             hccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcC-----chHHHHHH----hccCCcHHHHHHHHHHHHH
Q 008257          317 IQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHN-----LAALFIEL----LQSNGLDKVQMVSATALEN  387 (572)
Q Consensus       317 ~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g-----~i~~Lv~l----L~~~~~~~vk~~Aa~aL~~  387 (572)
                      ..        ....++..++.++..+..   +|+.+|..+.+..     ..|.++.+    +.+.....+|..|+.++..
T Consensus       323 ~~--------~p~~i~~~Al~tla~~ir---gN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~a  391 (651)
T 3grl_A          323 TG--------VPADILTETINTVSEVIR---GCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQC  391 (651)
T ss_dssp             SS--------CCHHHHHHHHHHHHHHHT---TCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHH
T ss_pred             CC--------CCHHHHHHHHHHHHHHHh---CCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence            21        245677788888888776   4999999988764     34555555    5554478889888888877


Q ss_pred             hhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHH
Q 008257          388 LSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAAL  467 (572)
Q Consensus       388 ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL  467 (572)
                      +..+......           .+...+...+.     ..+.      +.   +..|.  .|..-|-+.|+--.--|+.+|
T Consensus       392 y~~~N~~~Q~-----------~i~~~llp~~~-----~~~~------~~---~s~g~--ll~~~l~s~d~~~~wfAavil  444 (651)
T 3grl_A          392 FLYKNQKGQG-----------EIVSTLLPSTI-----DATG------NT---VSAGQ--LLCGGLFSTDSLSNWCAAVAL  444 (651)
T ss_dssp             HHTTCHHHHH-----------HHHHTTSSCCC-----CCTT------SS---SCHHH--HHHHHHTSSCHHHHHHHHHHH
T ss_pred             HHhCCHHHHH-----------HHHHhcCCccc-----ccCC------CC---CCcch--hhhhhhccCchHHHHHHHHHH
Confidence            6543321100           00000100000     0000      00   11121  234455566775545577788


Q ss_pred             HHhhhcCccchhhHHHH---HhcCC-----hHHHHHHHhhcCCHHHHHHHHHHHHHHH-cchhhhhhhcCCCCchHHHHH
Q 008257          468 STVIDDGVDIEQGVMVL---CEAQG-----IKPILDVLLEKRTENLQRRAVWVVERIL-RTDDIAYEVSGDPNVSTALVD  538 (572)
Q Consensus       468 ~~l~~~~~~~~~~~~~i---~~~g~-----i~~L~~lL~~~~~~~~~~~a~~~l~~l~-~~~~~~~~~~~~~~~~~~Lv~  538 (572)
                      ..+..+.+..+.....+   .+.|-     |+.+..+|....++.++..-+.+|...+ .++.....|-..+.-.+.|++
T Consensus       445 ~hll~~n~~~K~~~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~e~p~AV~dFL~~~s~l~~L~~  524 (651)
T 3grl_A          445 AHALQENATQKEQLLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLLMLLCTWLSNCPIAVTHFLHNSANVPFLTG  524 (651)
T ss_dssp             HHHHTTCHHHHHHHTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHHHHhCChHHHHHHHcCCchHHHHHH
Confidence            88887654221111111   01111     3345566643445665555555555555 445555565444433358888


Q ss_pred             Hhhc--C--CchhHHHHHHHHHhhcccCCCC
Q 008257          539 AFQH--A--DYRTRQIAERALKHIDKIPNFS  565 (572)
Q Consensus       539 ll~~--~--~~~~~~~Aa~aL~~L~~~~~~s  565 (572)
                      .+.+  +  +.-++=.++-.|.--..+.+.+
T Consensus       525 ~i~~~~~~~~~lvqGL~a~LLGi~yef~~~~  555 (651)
T 3grl_A          525 QIAENLGEEEQLVQGLCALLLGISIYFNDNS  555 (651)
T ss_dssp             HHHSCCCHHHHHHHHHHHHHHHHHHHTCCSC
T ss_pred             HHHhccCcchHHHHHHHHHHHHHHhhccCCC
Confidence            7743  2  2456767777776666665555

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.70  E-value=1.2e-15  Score=166.83  Aligned_cols=323  Identities=10%  Similarity=0.086  Sum_probs=209.4

Q ss_pred             CCCCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhHHHHHH
Q 008257            4 SKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLIN   83 (572)
Q Consensus         4 ~~s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~~~Lv~   83 (572)
                      ++|+|+...+.+--.+..+...+....    .-.+..+.+-|+++++.+|..|..+|+++... +    +.+.-.|.+.+
T Consensus        58 ~~s~~~~~Krl~yl~l~~~~~~~~e~~----~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~-~----~~~~l~~~l~~  128 (591)
T 2vgl_B           58 MQTDNLELKKLVYLYLMNYAKSQPDMA----IMAVNSFVKDCEDPNPLIRALAVRTMGCIRVD-K----ITEYLCEPLRK  128 (591)
T ss_dssp             TSSSCHHHHHHHHHHHHHHHHHSHHHH----HTTHHHHGGGSSSSSHHHHHHHHHHHHTCCSG-G----GHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHHcccCchHH----HHHHHHHHHHcCCCCHHHHHHHHHHHHcCChH-H----HHHHHHHHHHH
Confidence            467788877777777777665221111    12356777778888999998888888877532 2    22222388999


Q ss_pred             hcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCC
Q 008257           84 IMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGP  163 (572)
Q Consensus        84 lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~  163 (572)
                      +|.+.++.+|..|+.++.++....+.  .+.+.|.+|.|.++|.+.     ++.++..|+++|..++.......  .   
T Consensus       129 ~L~d~~~~VRk~A~~al~~i~~~~p~--~~~~~~~~~~l~~lL~d~-----d~~V~~~A~~aL~~i~~~~~~~~--~---  196 (591)
T 2vgl_B          129 CLKDEDPYVRKTAAVCVAKLHDINAQ--MVEDQGFLDSLRDLIADS-----NPMVVANAVAALSEISESHPNSN--L---  196 (591)
T ss_dssp             HSSCSCHHHHHHHHHHHHHHHHSSCC--CHHHHHHHHHHHHTTSCS-----CHHHHHHHHHHHHHHTTSCCSCC--S---
T ss_pred             HcCCCChHHHHHHHHHHHHHHhhChh--hcccccHHHHHHHHhCCC-----ChhHHHHHHHHHHHHHhhCCCcc--c---
Confidence            99999999999999999999874332  233468899999999753     38999999999999987543210  0   


Q ss_pred             CccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHH
Q 008257          164 DNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQN  243 (572)
Q Consensus       164 ~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~  243 (572)
                         .-...+.++.|+..+...++..|...+++|..++....  +..      ...++.+..++++.++.++..|++++..
T Consensus       197 ---~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~--~~~------~~~l~~l~~~l~~~~~~V~~ea~~~i~~  265 (591)
T 2vgl_B          197 ---LDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDD--REA------QSICERVTPRLSHANSAVVLSAVKVLMK  265 (591)
T ss_dssp             ---CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSH--HHH------HHHHHHHTTCSCSSTTHHHHHHHHHHHH
T ss_pred             ---hhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCCh--HHH------HHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence               11234568888888888899999999999988885432  111      2457888888999999999999999999


Q ss_pred             cCCCC--ChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCC
Q 008257          244 LSPHM--GHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGE  321 (572)
Q Consensus       244 Ls~~~--~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~  321 (572)
                      +....  +.+..+.+..  ...+.|+.+++ ++.  .+|..|+..|..+....++..    .. .+..+   +...    
T Consensus       266 l~~~~~~~~~~~~~~~~--~~~~~L~~L~~-~d~--~vr~~aL~~l~~i~~~~p~~~----~~-~~~~~---~~~~----  328 (591)
T 2vgl_B          266 FLELLPKDSDYYNMLLK--KLAPPLVTLLS-GEP--EVQYVALRNINLIVQKRPEIL----KQ-EIKVF---FVKY----  328 (591)
T ss_dssp             SCCSCCBTTBSHHHHHH--HTHHHHHHHTT-SCH--HHHHHHHHHHHHHHHHCCSTT----TT-CTTTT---SCCT----
T ss_pred             HhhccCCCHHHHHHHHH--HHHHHHHHHhc-CCc--cHHHHHHHHHHHHHHhChHHH----HH-HHHhh---eecc----
Confidence            97531  2232233333  36678887765 443  889889888877654222110    00 00000   0000    


Q ss_pred             CCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhh
Q 008257          322 TRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSL  390 (572)
Q Consensus       322 ~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~  390 (572)
                          .....++..++..|..++     ++++.+.     +++.|.+.+++. ++++|+.++++++.++.
T Consensus       329 ----~d~~~Ir~~al~~L~~l~-----~~~nv~~-----iv~~L~~~l~~~-d~~~r~~~v~aI~~la~  382 (591)
T 2vgl_B          329 ----NDPIYVKLEKLDIMIRLA-----SQANIAQ-----VLAELKEYATEV-DVDFVRKAVRAIGRCAI  382 (591)
T ss_dssp             ----TSCHHHHHHHHHHHHHTC-----CSSTHHH-----HHHHHHHHTTSS-CHHHHHHHHHHHHHHHT
T ss_pred             ----CChHHHHHHHHHHHHHHC-----ChhhHHH-----HHHHHHHHHhcC-CHHHHHHHHHHHHHHHH
Confidence                012445556666666665     2222221     244455666665 66666666666666654

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.68  E-value=3.1e-15  Score=170.90  Aligned_cols=481  Identities=12%  Similarity=0.029  Sum_probs=302.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhhccCcchHHHHHHc---------CCcHHHHHHHc---cCCHHHHHHHHHHHHHhccCcc
Q 008257            1 MTSSKSENLLTVEKAEKTLANLEKCENNVRQMAEN---------GRLQPLLTQIL---EGPQETKLSLAAFLGDLALNSD   68 (572)
Q Consensus         1 ~~~~~s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~---------g~i~~Lv~~L~---~~~~~~~~~aa~~L~~l~~~~~   68 (572)
                      |+|.-..+++..+.-..+|...-+.+.+.+.-++.         |....|..++.   +.+..+|..|+-.|.+.....-
T Consensus         1 ~~~~w~~~~~~~~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w   80 (852)
T 4fdd_A            1 MEYEWKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHF   80 (852)
T ss_dssp             ----CCCCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSG
T ss_pred             CCCCCCCChhhHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHhCCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcc
Confidence            55655666666665566666544333333332221         23334455554   5567889899988988654221


Q ss_pred             hh-HHHHhhhH-HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHH
Q 008257           69 VK-VLVARTVG-SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATIL  146 (572)
Q Consensus        69 ~k-~~i~~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L  146 (572)
                      .+ ..-.+..+ +.|++.|.++++.+|..++.++..++..+...   .-.+.+|.|++.+.+.     +..+++.+..+|
T Consensus        81 ~~~~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~---~wp~ll~~L~~~l~~~-----~~~~r~~al~~L  152 (852)
T 4fdd_A           81 QNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQ---NWPDLLPKLCSLLDSE-----DYNTCEGAFGAL  152 (852)
T ss_dssp             GGCCHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTT---TCTTHHHHHHHHHSCS-----SHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCcc---ccHHHHHHHHHHHcCC-----CHHHHHHHHHHH
Confidence            11 01122356 88888899999999999999999999743110   0145688999999764     378899999999


Q ss_pred             HHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHh
Q 008257          147 ANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFV  226 (572)
Q Consensus       147 ~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL  226 (572)
                      ..++......  +.-+.-  .-.....++.|++++.+++++++..|+++|..+......  .....+  ...++.|+.++
T Consensus       153 ~~i~~~~~~~--~~~~~~--~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~--~~~~~~--~~~l~~l~~~~  224 (852)
T 4fdd_A          153 QKICEDSAEI--LDSDVL--DRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ--ALMLHI--DSFIENLFALA  224 (852)
T ss_dssp             HHHHHHHTTH--HHHCSS--SSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCH--HHHTSH--HHHHHHHHHHH
T ss_pred             HHHHHHhHHH--hchhhh--cchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccH--HHHHHH--HHHHHHHHHHc
Confidence            9998743211  000000  011356888999999999999999999999988765331  111111  24678888899


Q ss_pred             cCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhC--
Q 008257          227 EAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDE--  304 (572)
Q Consensus       227 ~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~--  304 (572)
                      .++++++|..|+++|..++...+..+...+.   +.++.+++++.+.++  .++..|+..+..++... ..++ +...  
T Consensus       225 ~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~---~l~~~l~~~~~~~~~--~vr~~a~e~l~~l~~~~-~~~~-~~~~~~  297 (852)
T 4fdd_A          225 GDEEPEVRKNVCRALVMLLEVRMDRLLPHMH---NIVEYMLQRTQDQDE--NVALEACEFWLTLAEQP-ICKD-VLVRHL  297 (852)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH---HHHHHHHHHHTCSSH--HHHHHHHHHHHHHTTST-THHH-HHTTTH
T ss_pred             CCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH---HHHHHHHHHccCCcH--HHHHHHHHHHHHHhcch-hHHH-HHHHHH
Confidence            9999999999999999998654332211121   356777788777664  88999998888887632 2222 2221  


Q ss_pred             -CChHHHHHHHhhhc-------cC--CCCC--Cc-chhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhcc
Q 008257          305 -GAFGLIFSRVKSIQ-------LG--ETRG--SR-FVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQS  371 (572)
Q Consensus       305 -g~l~~Lv~lL~~~~-------~~--~~~~--~~-~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~  371 (572)
                       ..+|.++..+....       ..  +...  .. ..-.++..++.+|..++..   .++   .+.. .++|.+.+++++
T Consensus       298 ~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~---~~~---~~~~-~l~~~l~~~l~~  370 (852)
T 4fdd_A          298 PKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANV---YRD---ELLP-HILPLLKELLFH  370 (852)
T ss_dssp             HHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHH---HGG---GGHH-HHHHHHHHHHTC
T ss_pred             HHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHh---ccH---HHHH-HHHHHHHHHhcC
Confidence             23455555542000       00  0000  00 1123466677777777743   111   1111 367888899988


Q ss_pred             CCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHh
Q 008257          372 NGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIAL  451 (572)
Q Consensus       372 ~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~l  451 (572)
                      + +..+|..|+++|++++........                                         -.-.+.++.|+++
T Consensus       371 ~-~~~~R~aa~~alg~i~~~~~~~~~-----------------------------------------~~l~~~l~~l~~~  408 (852)
T 4fdd_A          371 H-EWVVKESGILVLGAIAEGCMQGMI-----------------------------------------PYLPELIPHLIQC  408 (852)
T ss_dssp             S-SHHHHHHHHHHHHHTTTTTHHHHG-----------------------------------------GGHHHHHHHHHHH
T ss_pred             C-CHHHHHHHHHHHHHHHhcchHHHH-----------------------------------------HHHHHHHHHHHHH
Confidence            8 899999999999999764321100                                         0123578999999


Q ss_pred             hcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcc-hhhhhhhcCCC
Q 008257          452 LDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRT-DDIAYEVSGDP  530 (572)
Q Consensus       452 L~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~-~~~~~~~~~~~  530 (572)
                      |+++++.|+..|+++|++++..-... .  ....-.+.++.|++.| .++++.+++.|+++|.+++.. ......+..  
T Consensus       409 l~d~~~~Vr~~a~~~l~~l~~~~~~~-~--~~~~~~~ll~~L~~~L-~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~--  482 (852)
T 4fdd_A          409 LSDKKALVRSITCWTLSRYAHWVVSQ-P--PDTYLKPLMTELLKRI-LDSNKRVQEAACSAFATLEEEACTELVPYLA--  482 (852)
T ss_dssp             TTCSSHHHHHHHHHHHHHTHHHHHHS-C--TTTTHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHHGGGGGGGHH--
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHhccc-h--HHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHhhHhhHhHHH--
Confidence            99999999999999999998642100 0  0001123467788888 478899999999999999854 211122221  


Q ss_pred             CchHHHHHHhhcCCchhHHHHHHHHHhhc
Q 008257          531 NVSTALVDAFQHADYRTRQIAERALKHID  559 (572)
Q Consensus       531 ~~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~  559 (572)
                      .+...|+.+++..+......+..++..+.
T Consensus       483 ~ll~~L~~~l~~~~~~~~~~~~~ai~~l~  511 (852)
T 4fdd_A          483 YILDTLVFAFSKYQHKNLLILYDAIGTLA  511 (852)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence            34457888888777666666777777775

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.65  E-value=3.5e-15  Score=170.49  Aligned_cols=475  Identities=11%  Similarity=0.044  Sum_probs=294.1

Q ss_pred             CCCCCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHh--hhH-H
Q 008257            3 SSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVAR--TVG-S   79 (572)
Q Consensus         3 ~~~s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~--~g~-~   79 (572)
                      .++++++.++..|..+|..+.........-.-...++.+...+.+++.++|..++.+|..++.....  .+..  .++ +
T Consensus       182 ~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~--~~~~~l~~l~~  259 (852)
T 4fdd_A          182 FFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMD--RLLPHMHNIVE  259 (852)
T ss_dssp             TTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHH--HHGGGHHHHHH
T ss_pred             HhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHH--HHHHHHHHHHH
Confidence            4567889999999999998876432211111124578888888899999999999999998763221  1111  145 8


Q ss_pred             HHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHH--HcCChHHHHHHHh----------cc-CCC--C----CCcchHH
Q 008257           80 CLINIMKSGNMQAREAALKALNQISSCEPSAKVLI--HAGILPPLVKDLF----------TV-GSN--H----LPMRLKE  140 (572)
Q Consensus        80 ~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv--~~G~i~~Lv~lL~----------s~-~~~--~----~~~~~~~  140 (572)
                      .++..+++.++.++..|+..+..++.....++.+-  -...+|.|+..+.          .. .++  +    ....++.
T Consensus       260 ~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~  339 (852)
T 4fdd_A          260 YMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRK  339 (852)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHH
T ss_pred             HHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHH
Confidence            88999999999999999999999987654443221  1234566666552          11 000  0    2246789


Q ss_pred             HHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChH
Q 008257          141 VSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATI  220 (572)
Q Consensus       141 ~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~  220 (572)
                      .|+.+|..++...++            -....+++.+..++.++++.++..++++|..++.....  ....  .-.+.++
T Consensus       340 ~a~~~L~~la~~~~~------------~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~--~~~~--~l~~~l~  403 (852)
T 4fdd_A          340 CSAAALDVLANVYRD------------ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQ--GMIP--YLPELIP  403 (852)
T ss_dssp             HHHHHHHHHHHHHGG------------GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHH--HHGG--GHHHHHH
T ss_pred             HHHHHHHHHHHhccH------------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchH--HHHH--HHHHHHH
Confidence            999999999864210            12245778888888889999999999999999987531  1111  1245789


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHH
Q 008257          221 SLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQ  300 (572)
Q Consensus       221 ~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~  300 (572)
                      .|+.++.++++.+|..|+++|.+++...+.........  +.++.|++.|.+++.  .++..|+++|.+++.........
T Consensus       404 ~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~--~ll~~L~~~L~d~~~--~vr~~a~~aL~~l~~~~~~~l~~  479 (852)
T 4fdd_A          404 HLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLK--PLMTELLKRILDSNK--RVQEAACSAFATLEEEACTELVP  479 (852)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHH--HHHHHHHHHHTCSSH--HHHHHHHHHHHHHHHHHGGGGGG
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHH--HHHHHHHHHHhCCCH--HHHHHHHHHHHHHHHHhhHhhHh
Confidence            99999999999999999999999885311110001111  467888888877664  89999999999986422111011


Q ss_pred             HHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHh---ccCCcHHH
Q 008257          301 MLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELL---QSNGLDKV  377 (572)
Q Consensus       301 l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL---~~~~~~~v  377 (572)
                      .. .+.++.|+.+++....       ....+.-.+++.+..........++...     .++|.|++.+   .+. ++.+
T Consensus       480 ~l-~~ll~~L~~~l~~~~~-------~~~~~~~~ai~~l~~~~~~~~~~~~~~~-----~l~p~l~~~~~~l~d~-~~~~  545 (852)
T 4fdd_A          480 YL-AYILDTLVFAFSKYQH-------KNLLILYDAIGTLADSVGHHLNKPEYIQ-----MLMPPLIQKWNMLKDE-DKDL  545 (852)
T ss_dssp             GH-HHHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHHHHGGGGCCHHHHH-----HHHHHHHHHHHHSCTT-CTTH
T ss_pred             HH-HHHHHHHHHHHHHhCh-------HHHHHHHHHHHHHHHHhhhhhccHHHHH-----HHHHHHHHHHHhcccc-cHHH
Confidence            11 2455666666654210       0111222344444332211001222211     3567777543   344 4445


Q ss_pred             HHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhc----
Q 008257          378 QMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLD----  453 (572)
Q Consensus       378 k~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~----  453 (572)
                      + .+..++..++...+...                           .|            ++  ...++.++++++    
T Consensus       546 ~-~~~~~l~~i~~~~g~~~---------------------------~~------------~~--~~i~~~~~~~l~~~l~  583 (852)
T 4fdd_A          546 F-PLLECLSSVATALQSGF---------------------------LP------------YC--EPVYQRCVNLVQKTLA  583 (852)
T ss_dssp             H-HHHHHHHHHHHHHGGGG---------------------------HH------------HH--HHHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHHHHhHhH---------------------------HH------------HH--HHHHHHHHHHHHHHHH
Confidence            3 56677776665332100                           00            00  012233333332    


Q ss_pred             -------------CCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcc-
Q 008257          454 -------------HTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRT-  519 (572)
Q Consensus       454 -------------~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~-  519 (572)
                                   .++.+++..++.+++.++..-.  ......+.+.+.++.+++++ .+++..+++.+.+++..++.. 
T Consensus       584 ~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~--~~~~~~~~~~~~~~~l~~~l-~~~~~~vr~~a~~~l~~l~~~~  660 (852)
T 4fdd_A          584 QAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLG--GNIEQLVARSNILTLMYQCM-QDKMPEVRQSSFALLGDLTKAC  660 (852)
T ss_dssp             HHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHG--GGGHHHHHTCCHHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHh--HhHHHHhcCCcHHHHHHHHh-CCCChhHHHHHHHHHHHHHHHh
Confidence                         2356788889999999885311  11123344567778888888 588899999999999998843 


Q ss_pred             hhhhhhhcCCCCchHHHHHHhhcCCchhHHHHHHHHHhhcc
Q 008257          520 DDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHIDK  560 (572)
Q Consensus       520 ~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~~  560 (572)
                      .+.-..+..  .+.+.|++.+..+++.++..|+|++..++.
T Consensus       661 ~~~~~~~l~--~~lp~l~~~l~~~~~~v~~~a~~alg~i~~  699 (852)
T 4fdd_A          661 FQHVKPCIA--DFMPILGTNLNPEFISVCNNATWAIGEISI  699 (852)
T ss_dssp             GGGTGGGHH--HHHHHHHHTCCTTSHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHH--HHHHHHHHHcCccchHHHHHHHHHHHHHHH
Confidence            221122211  133477888878888999999999998865

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.64  E-value=7.6e-14  Score=152.55  Aligned_cols=431  Identities=11%  Similarity=0.109  Sum_probs=288.4

Q ss_pred             CCCCCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhcc-CcchhHHHHhhhH-HH
Q 008257            3 SSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLAL-NSDVKVLVARTVG-SC   80 (572)
Q Consensus         3 ~~~s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~-~~~~k~~i~~~g~-~~   80 (572)
                      -++++|+.++..|..+|.++. .++....     .++++.+.|.+.++.+|..|+.+|.++.. +++   .+...+. +.
T Consensus        94 dL~~~n~~ir~~AL~~L~~i~-~~~~~~~-----l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~  164 (591)
T 2vgl_B           94 DCEDPNPLIRALAVRTMGCIR-VDKITEY-----LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDS  164 (591)
T ss_dssp             GSSSSSHHHHHHHHHHHHTCC-SGGGHHH-----HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHHHcCC-hHHHHHH-----HHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh---hcccccHHHH
Confidence            367899999999988888886 3333333     35788999999999999999999999876 333   2223455 99


Q ss_pred             HHHhcccCCHHHHHHHHHHHHHhhcCCCcH-HHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCcc
Q 008257           81 LINIMKSGNMQAREAALKALNQISSCEPSA-KVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSI  159 (572)
Q Consensus        81 Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~-~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~  159 (572)
                      |.++|++.++.++..|+.+|..++.+.+.. ..-...+.++.|+..|...     ++-.+.....+|.+++..+.     
T Consensus       165 l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~-----~~~~q~~il~~l~~l~~~~~-----  234 (591)
T 2vgl_B          165 LRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNEC-----TEWGQIFILDCLSNYNPKDD-----  234 (591)
T ss_dssp             HHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHTSCCCSH-----
T ss_pred             HHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCC-----CchHHHHHHHHHHHhCCCCh-----
Confidence            999999999999999999999999765422 1111334567777777643     25566666666665542110     


Q ss_pred             ccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCC-CccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHH
Q 008257          160 TVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSP-TTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASI  238 (572)
Q Consensus       160 ~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~-~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~  238 (572)
                              -.....++.+..++++.++.+...|++++..+...- .+.+..+ .+ -....++|+.++. +++++|-.|+
T Consensus       235 --------~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~-~~-~~~~~~~L~~L~~-~d~~vr~~aL  303 (591)
T 2vgl_B          235 --------REAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYN-ML-LKKLAPPLVTLLS-GEPEVQYVAL  303 (591)
T ss_dssp             --------HHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHH-HH-HHHTHHHHHHHTT-SCHHHHHHHH
T ss_pred             --------HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHH-HH-HHHHHHHHHHHhc-CCccHHHHHH
Confidence                    012467888888889999999999999999987521 1101122 22 1345678887764 7889999999


Q ss_pred             HHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhc
Q 008257          239 ELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQ  318 (572)
Q Consensus       239 ~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~  318 (572)
                      .+|..+....+..    +.   ..+..+..++ + ++ ..++..|+.+|.+++..+ +. +.     .++.|...+.+  
T Consensus       304 ~~l~~i~~~~p~~----~~---~~~~~~~~~~-~-d~-~~Ir~~al~~L~~l~~~~-nv-~~-----iv~~L~~~l~~--  364 (591)
T 2vgl_B          304 RNINLIVQKRPEI----LK---QEIKVFFVKY-N-DP-IYVKLEKLDIMIRLASQA-NI-AQ-----VLAELKEYATE--  364 (591)
T ss_dssp             HHHHHHHHHCCST----TT---TCTTTTSCCT-T-SC-HHHHHHHHHHHHHTCCSS-TH-HH-----HHHHHHHHTTS--
T ss_pred             HHHHHHHHhChHH----HH---HHHHhheecc-C-Ch-HHHHHHHHHHHHHHCChh-hH-HH-----HHHHHHHHHhc--
Confidence            9999887543322    11   1223332222 2 22 389999999999988633 22 22     24455555543  


Q ss_pred             cCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCC
Q 008257          319 LGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKL  398 (572)
Q Consensus       319 ~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~  398 (572)
                              .+..++..+++++.+++..   .+...     ...++.|+++|+.. .+.+...+..++.++....+..   
T Consensus       365 --------~d~~~r~~~v~aI~~la~~---~~~~~-----~~~v~~Ll~ll~~~-~~~v~~e~i~~l~~ii~~~p~~---  424 (591)
T 2vgl_B          365 --------VDVDFVRKAVRAIGRCAIK---VEQSA-----ERCVSTLLDLIQTK-VNYVVQEAIVVIRDIFRKYPNK---  424 (591)
T ss_dssp             --------SCHHHHHHHHHHHHHHHTT---CHHHH-----HHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHHHSCSS---
T ss_pred             --------CCHHHHHHHHHHHHHHHHh---ChhHH-----HHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHCcch---
Confidence                    2456788899999999964   44322     23579999999998 7788888888888887543221   


Q ss_pred             CCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcC-CCHhHHHHHHHHHHHhhhcCccc
Q 008257          399 PELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDH-TNEKVVEASLAALSTVIDDGVDI  477 (572)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~-~~~~v~~~A~~aL~~l~~~~~~~  477 (572)
                                                                ...+++.|++.|++ .++.+...++++|+.....-.  
T Consensus       425 ------------------------------------------~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~--  460 (591)
T 2vgl_B          425 ------------------------------------------YESIIATLCENLDSLDEPDARAAMIWIVGEYAERID--  460 (591)
T ss_dssp             ------------------------------------------CCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCT--
T ss_pred             ------------------------------------------HHHHHHHHHHHHHhccCHHHHHHHHHHHHccccccc--
Confidence                                                      23478889999974 678899999999998864321  


Q ss_pred             hhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcc-hhhhhhhcCCCCchHHHHHHh-h-cCCchhHHHHHHH
Q 008257          478 EQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRT-DDIAYEVSGDPNVSTALVDAF-Q-HADYRTRQIAERA  554 (572)
Q Consensus       478 ~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~-~~~~~~~~~~~~~~~~Lv~ll-~-~~~~~~~~~Aa~a  554 (572)
                       + ..     ..++.+++-+ ...++.+|..++.++.+++.. ++...      .....+++.. . +.|+++|++|...
T Consensus       461 -~-~~-----~~l~~l~~~~-~~~~~~vr~~~l~a~~Kl~~~~p~~~~------~~i~~ll~~~~~d~~d~evrdRA~~y  526 (591)
T 2vgl_B          461 -N-AD-----ELLESFLEGF-HDESTQVQLTLLTAIVKLFLKKPSETQ------ELVQQVLSLATQDSDNPDLRDRGYIY  526 (591)
T ss_dssp             -T-HH-----HHHHHHSTTC-SSSCHHHHHHHHHHHHHHHTTCCSTTH------HHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred             -C-HH-----HHHHHHHHhh-ccCCHHHHHHHHHHHHHHHhcCchHHH------HHHHHHHHHhhhcCCChHHHHHHHHH
Confidence             1 11     1122233333 145678999999999999854 22110      1112345544 3 4678999999999


Q ss_pred             HHhhcc
Q 008257          555 LKHIDK  560 (572)
Q Consensus       555 L~~L~~  560 (572)
                      +.-|..
T Consensus       527 ~~ll~~  532 (591)
T 2vgl_B          527 WRLLST  532 (591)
T ss_dssp             HTTTTT
T ss_pred             HHHHCc
Confidence            888865

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.59  E-value=2.6e-13  Score=133.76  Aligned_cols=260  Identities=11%  Similarity=0.097  Sum_probs=198.8

Q ss_pred             HHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhH-HHHHHhcccCCHHHHHHHHHHHHHhhcCCC
Q 008257           30 RQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVG-SCLINIMKSGNMQAREAALKALNQISSCEP  108 (572)
Q Consensus        30 ~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~  108 (572)
                      ....+.+.++.|++.|.+++..+|..|+.+|+++..          ... +.|+++|+++++.++..|+++|..+...+.
T Consensus        17 ~~~~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~   86 (280)
T 1oyz_A           17 YNQCKKLNDDELFRLLDDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK   86 (280)
T ss_dssp             HHHHHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT
T ss_pred             HHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc
Confidence            345567889999999999999999999999998762          234 999999999999999999999999875433


Q ss_pred             cHHHHHHcCChHHHHH-HHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChh
Q 008257          109 SAKVLIHAGILPPLVK-DLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPT  187 (572)
Q Consensus       109 ~~~~iv~~G~i~~Lv~-lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~  187 (572)
                      ....     .++.|.+ ++..     .++.++..|+++|+++.....             .....+++.|+.++.++++.
T Consensus        87 ~~~~-----l~~~L~~~~~~d-----~~~~vr~~a~~aL~~l~~~~~-------------~~~~~~~~~L~~~l~d~~~~  143 (280)
T 1oyz_A           87 CEDN-----VFNILNNMALND-----KSACVRATAIESTAQRCKKNP-------------IYSPKIVEQSQITAFDKSTN  143 (280)
T ss_dssp             THHH-----HHHHHHHHHHHC-----SCHHHHHHHHHHHHHHHHHCG-------------GGHHHHHHHHHHHTTCSCHH
T ss_pred             cchH-----HHHHHHHHHhcC-----CCHHHHHHHHHHHHHHhccCC-------------cccHHHHHHHHHHhhCCCHH
Confidence            2111     2233332 2332     347899999999999975321             12356899999999999999


Q ss_pred             HHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHH
Q 008257          188 IECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLI  267 (572)
Q Consensus       188 ~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv  267 (572)
                      ++..++++|..+..              ..+++.|+.++.++++.+|..|+++|..+... ..          .+++.|+
T Consensus       144 vR~~a~~aL~~~~~--------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~----------~~~~~L~  198 (280)
T 1oyz_A          144 VRRATAFAISVIND--------------KATIPLLINLLKDPNGDVRNWAAFAININKYD-NS----------DIRDCFV  198 (280)
T ss_dssp             HHHHHHHHHHTC-----------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCC-CH----------HHHHHHH
T ss_pred             HHHHHHHHHHhcCC--------------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccC-cH----------HHHHHHH
Confidence            99999999987642              24899999999999999999999999988533 11          3567888


Q ss_pred             hhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCC
Q 008257          268 RVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLS  347 (572)
Q Consensus       268 ~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~  347 (572)
                      .+|.+++.  .++..|+.+|+++.           ...+++.|+..|.+.            .+...++.+|.++.    
T Consensus       199 ~~l~d~~~--~vR~~A~~aL~~~~-----------~~~~~~~L~~~l~d~------------~vr~~a~~aL~~i~----  249 (280)
T 1oyz_A          199 EMLQDKNE--EVRIEAIIGLSYRK-----------DKRVLSVLCDELKKN------------TVYDDIIEAAGELG----  249 (280)
T ss_dssp             HHTTCSCH--HHHHHHHHHHHHTT-----------CGGGHHHHHHHHTSS------------SCCHHHHHHHHHHC----
T ss_pred             HHhcCCCH--HHHHHHHHHHHHhC-----------CHhhHHHHHHHhcCc------------cHHHHHHHHHHhcC----
Confidence            99988775  89999999999875           235788999999752            13457888888875    


Q ss_pred             CChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHH
Q 008257          348 DEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALE  386 (572)
Q Consensus       348 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~  386 (572)
                       ++         .++|.|.+++....++++...+..+|.
T Consensus       250 -~~---------~~~~~L~~~l~~~~~~~~~~~~~~~l~  278 (280)
T 1oyz_A          250 -DK---------TLLPVLDTMLYKFDDNEIITSAIDKLK  278 (280)
T ss_dssp             -CG---------GGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred             -ch---------hhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence             33         568999999987546777777777664

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.55  E-value=4.1e-13  Score=132.30  Aligned_cols=260  Identities=12%  Similarity=0.029  Sum_probs=197.5

Q ss_pred             HHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHH
Q 008257          113 LIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKL  192 (572)
Q Consensus       113 iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a  192 (572)
                      +.+.+.++.|++.|.++     ++.+|..|+++|+++..                   .+.++.|+.+|.++++.++..+
T Consensus        19 ~~~~~~i~~L~~~L~~~-----~~~vr~~A~~~L~~~~~-------------------~~~~~~L~~~l~d~~~~vR~~A   74 (280)
T 1oyz_A           19 QCKKLNDDELFRLLDDH-----NSLKRISSARVLQLRGG-------------------QDAVRLAIEFCSDKNYIRRDIG   74 (280)
T ss_dssp             HHHTSCHHHHHHHTTCS-----SHHHHHHHHHHHHHHCC-------------------HHHHHHHHHHHTCSSHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHcC-----CHHHHHHHHHHHHccCC-------------------chHHHHHHHHHcCCCHHHHHHH
Confidence            34678999999999754     37899999999998842                   4579999999999999999999


Q ss_pred             HHHHHHccCCCCccHHHHHHHHhcCChHHHH-HHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhc
Q 008257          193 LQVLVGLTSSPTTVLSVVSAIKSSGATISLV-QFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVIS  271 (572)
Q Consensus       193 ~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv-~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~  271 (572)
                      +++|..+......   ..      ..++.|. .++.++++.+|..++++|..+....+..     ..  ..++.|+.+|.
T Consensus        75 ~~aL~~l~~~~~~---~~------~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~-----~~--~~~~~L~~~l~  138 (280)
T 1oyz_A           75 AFILGQIKICKKC---ED------NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIY-----SP--KIVEQSQITAF  138 (280)
T ss_dssp             HHHHHHSCCCTTT---HH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG-----HH--HHHHHHHHHTT
T ss_pred             HHHHHHhcccccc---ch------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc-----cH--HHHHHHHHHhh
Confidence            9999998754321   11      1234444 2456788999999999999886432211     11  35788999998


Q ss_pred             cCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChH
Q 008257          272 ENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPD  351 (572)
Q Consensus       272 ~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~  351 (572)
                      +++.  .++..|+.+|+++..           .++++.|+.++.+          .+..++..++++|.++..   .++ 
T Consensus       139 d~~~--~vR~~a~~aL~~~~~-----------~~~~~~L~~~l~d----------~~~~vr~~a~~aL~~~~~---~~~-  191 (280)
T 1oyz_A          139 DKST--NVRRATAFAISVIND-----------KATIPLLINLLKD----------PNGDVRNWAAFAININKY---DNS-  191 (280)
T ss_dssp             CSCH--HHHHHHHHHHHTC--------------CCHHHHHHHHTC----------SSHHHHHHHHHHHHHHTC---CCH-
T ss_pred             CCCH--HHHHHHHHHHHhcCC-----------HHHHHHHHHHHcC----------CCHHHHHHHHHHHHhhcc---CcH-
Confidence            8875  899999999998753           2589999999976          245678899999988852   133 


Q ss_pred             HHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCcc
Q 008257          352 AIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLC  431 (572)
Q Consensus       352 ~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~  431 (572)
                              .++|.|+++|+++ ++.+|..|+++|+.+.                                          
T Consensus       192 --------~~~~~L~~~l~d~-~~~vR~~A~~aL~~~~------------------------------------------  220 (280)
T 1oyz_A          192 --------DIRDCFVEMLQDK-NEEVRIEAIIGLSYRK------------------------------------------  220 (280)
T ss_dssp             --------HHHHHHHHHTTCS-CHHHHHHHHHHHHHTT------------------------------------------
T ss_pred             --------HHHHHHHHHhcCC-CHHHHHHHHHHHHHhC------------------------------------------
Confidence                    3468899999998 8999999999998763                                          


Q ss_pred             CccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHH
Q 008257          432 SLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVW  511 (572)
Q Consensus       432 ~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~  511 (572)
                               +..+++.|+++|.+++  ++..|+.+|+.+..              ...++.|.+++..+.++.+...+..
T Consensus       221 ---------~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~--------------~~~~~~L~~~l~~~~~~~~~~~~~~  275 (280)
T 1oyz_A          221 ---------DKRVLSVLCDELKKNT--VYDDIIEAAGELGD--------------KTLLPVLDTMLYKFDDNEIITSAID  275 (280)
T ss_dssp             ---------CGGGHHHHHHHHTSSS--CCHHHHHHHHHHCC--------------GGGHHHHHHHHTTSSCCHHHHHHHH
T ss_pred             ---------CHhhHHHHHHHhcCcc--HHHHHHHHHHhcCc--------------hhhhHHHHHHHhcCCCcHHHHHHHH
Confidence                     2248899999998754  88899999998752              1357889999976677777777777


Q ss_pred             HHHH
Q 008257          512 VVER  515 (572)
Q Consensus       512 ~l~~  515 (572)
                      .+.+
T Consensus       276 ~l~~  279 (280)
T 1oyz_A          276 KLKR  279 (280)
T ss_dssp             HHTC
T ss_pred             Hhhc
Confidence            6643

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.52  E-value=1.6e-12  Score=142.69  Aligned_cols=440  Identities=13%  Similarity=0.081  Sum_probs=292.2

Q ss_pred             CCCCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhcc-CcchhHHHHhhhHHHHH
Q 008257            4 SKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLAL-NSDVKVLVARTVGSCLI   82 (572)
Q Consensus         4 ~~s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~-~~~~k~~i~~~g~~~Lv   82 (572)
                      +++.++.++..|.++|.++.. +    .+.+ ..++++.++|.+.++.+|..|+.++.++.. +++.    .+...+.+.
T Consensus       116 L~~~n~~vr~lAL~~L~~i~~-~----~~~~-~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~----v~~~~~~l~  185 (618)
T 1w63_A          116 LNHSTQFVQGLALCTLGCMGS-S----EMCR-DLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPEL----MEMFLPATK  185 (618)
T ss_dssp             HSCSSSHHHHHHHHHHHHHCC-H----HHHH-HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGG----GGGGGGGTT
T ss_pred             cCCCCHhHHHHHHHHHHhcCC-H----HHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHH----HHHHHHHHH
Confidence            356777888888888888873 2    2322 357888899999999999999999999876 3332    122238889


Q ss_pred             HhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccC----C------CCCCcchHHHHHHHHHHHHhc
Q 008257           83 NIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVG----S------NHLPMRLKEVSATILANVVNS  152 (572)
Q Consensus        83 ~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~----~------~~~~~~~~~~aa~~L~nla~~  152 (572)
                      ++|...++.++..|+.+|..++..++..... -...+|.|+++|..-.    +      ...++-.|.....+|..++..
T Consensus       186 ~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~-~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~  264 (618)
T 1w63_A          186 NLLNEKNHGVLHTSVVLLTEMCERSPDMLAH-FRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRN  264 (618)
T ss_dssp             TSTTCCCHHHHHHHHHHHHHHCCSHHHHHHH-HHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTT
T ss_pred             HHhCCCCHhHHHHHHHHHHHHHHhChHHHHH-HHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCC
Confidence            9999999999999999999998653321111 2367899999886410    0      001367788888889888754


Q ss_pred             CCCCCccccCCCccccchhhhHHHHHHHHhc------CChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHh
Q 008257          153 GHDFDSITVGPDNQTLVSEDIVHNLLHLISN------TGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFV  226 (572)
Q Consensus       153 ~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~------~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL  226 (572)
                      ++.             ..+..++.|..++..      .+..+...+++++..+...+    ..+     ..++..|..++
T Consensus       265 ~~~-------------~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~----~l~-----~~a~~~L~~~L  322 (618)
T 1w63_A          265 DDD-------------SSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSES----GLR-----VLAINILGRFL  322 (618)
T ss_dssp             CHH-------------HHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCH----HHH-----HHHHHHHHHHH
T ss_pred             CHH-------------HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCH----HHH-----HHHHHHHHHHH
Confidence            211             112345555555532      34567889999999886532    222     14678999999


Q ss_pred             cCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCC
Q 008257          227 EAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGA  306 (572)
Q Consensus       227 ~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~  306 (572)
                      .++++++|..|+.+|..+....+    ..+.   .....++.++.+++.  .++..|+.+|..++..+ +. +.+     
T Consensus       323 ~~~d~~vr~~aL~~L~~i~~~~p----~~~~---~~~~~i~~~l~d~d~--~Ir~~alelL~~l~~~~-nv-~~i-----  386 (618)
T 1w63_A          323 LNNDKNIRYVALTSLLKTVQTDH----NAVQ---RHRSTIVDCLKDLDV--SIKRRAMELSFALVNGN-NI-RGM-----  386 (618)
T ss_dssp             TCSSTTTHHHHHHHHHHHHHHHH----HHHG---GGHHHHHHGGGSSCH--HHHHHHHHHHHHHCCSS-ST-HHH-----
T ss_pred             hCCCCchHHHHHHHHHHHHhhCH----HHHH---HHHHHHHHHccCCCh--hHHHHHHHHHHHHcccc-cH-HHH-----
Confidence            99999999999999998875422    1233   356788888988775  89999999999988732 23 222     


Q ss_pred             hHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHH
Q 008257          307 FGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALE  386 (572)
Q Consensus       307 l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~  386 (572)
                      ++.|...+.+          .+.+++..++.++.+++...  .+....      .++.|+++|+.. ...++..+...+.
T Consensus       387 v~eL~~~l~~----------~d~e~r~~~v~~I~~la~k~--~~~~~~------~v~~ll~lL~~~-~~~v~~~~~~~l~  447 (618)
T 1w63_A          387 MKELLYFLDS----------CEPEFKADCASGIFLAAEKY--APSKRW------HIDTIMRVLTTA-GSYVRDDAVPNLI  447 (618)
T ss_dssp             HHHHHHHHHH----------CCHHHHHHHHHHHHHHHHSS--CCCHHH------HHHHHHHHHHHT-GGGSCSSHHHHHH
T ss_pred             HHHHHHHHHh----------CCHHHHHHHHHHHHHHHHHh--CccHHH------HHHHHHHHHHhc-cchhHHHHHHHHH
Confidence            3666677665          24577888999999998642  122222      368899999987 6667777777777


Q ss_pred             HhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcC--CCHhHHHHHH
Q 008257          387 NLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDH--TNEKVVEASL  464 (572)
Q Consensus       387 ~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~--~~~~v~~~A~  464 (572)
                      .+....+..                                             ...+++.|+++|.+  ..+.+...++
T Consensus       448 ~ii~~~p~l---------------------------------------------~~~~v~~L~~~l~~~~~~~~~~~~~~  482 (618)
T 1w63_A          448 QLITNSVEM---------------------------------------------HAYTVQRLYKAILGDYSQQPLVQVAA  482 (618)
T ss_dssp             HHHHHSCST---------------------------------------------HHHHHHHHHHHHHHCCSCSHHHHHHH
T ss_pred             HHHhcChhH---------------------------------------------HHHHHHHHHHHHhcccccHHHHHHHH
Confidence            776533211                                             22367788888875  3455566789


Q ss_pred             HHHHHhhhcCcc--chh-hHHHHHhcCChHHHHHHHhh-cCCHHHHHHHHHHHHHHHcc-hhhhhhhcCCCCchHHHHHH
Q 008257          465 AALSTVIDDGVD--IEQ-GVMVLCEAQGIKPILDVLLE-KRTENLQRRAVWVVERILRT-DDIAYEVSGDPNVSTALVDA  539 (572)
Q Consensus       465 ~aL~~l~~~~~~--~~~-~~~~i~~~g~i~~L~~lL~~-~~~~~~~~~a~~~l~~l~~~-~~~~~~~~~~~~~~~~Lv~l  539 (572)
                      +.|+.....-.+  .+. ....+.....++.|..++.. ..++.+|..+++++.+++.. ++....      +...|-..
T Consensus       483 wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~~~~~------l~~~L~~~  556 (618)
T 1w63_A          483 WCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTCTVNR------IKKVVSIY  556 (618)
T ss_dssp             HHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSSCHHH------HHHHHHHH
T ss_pred             HHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcchHHH------HHHHHHHh
Confidence            999988642100  000 00000011234556566632 45788999999999999854 322211      22234444


Q ss_pred             hhcCCchhHHHHHHHHHhhcccC
Q 008257          540 FQHADYRTRQIAERALKHIDKIP  562 (572)
Q Consensus       540 l~~~~~~~~~~Aa~aL~~L~~~~  562 (572)
                      ..+.|.++|++|...+..|...+
T Consensus       557 ~~~~d~evrdRA~~y~~ll~~~~  579 (618)
T 1w63_A          557 GSSIDVELQQRAVEYNALFKKYD  579 (618)
T ss_dssp             TTCSCHHHHHHHHHHHHHHHTTT
T ss_pred             cCCCCHHHHHHHHHHHHHHcCcH
Confidence            56788899999999988887643

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.50  E-value=7e-12  Score=143.32  Aligned_cols=479  Identities=14%  Similarity=0.126  Sum_probs=278.6

Q ss_pred             CCCCHHHHHHHHHHHHhhccCcc----------------------hHHHHHHcCCcHHHHHHHcc-------CCHHHHHH
Q 008257            5 KSENLLTVEKAEKTLANLEKCEN----------------------NVRQMAENGRLQPLLTQILE-------GPQETKLS   55 (572)
Q Consensus         5 ~s~~~~~~~~A~~~L~~L~~~~~----------------------n~~~i~~~g~i~~Lv~~L~~-------~~~~~~~~   55 (572)
                      +++++.+...|...+..++....                      ..+... ...++.++..|..       .+..+|..
T Consensus       269 ~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~ll~~l~~~~~d~~~~~~~~r~~  347 (876)
T 1qgr_A          269 KSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKA  347 (876)
T ss_dssp             TCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCCHHHH
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHH-HHHhHHHHHHhhcccccccccccHHHHH
Confidence            45677888888888888765321                      000000 2235666676652       34567888


Q ss_pred             HHHHHHHhccCcchhHHHHhhhH-HHHHHhcccCCHHHHHHHHHHHHHhhcCCC-c-HHHHHHcCChHHHHHHHhccCCC
Q 008257           56 LAAFLGDLALNSDVKVLVARTVG-SCLINIMKSGNMQAREAALKALNQISSCEP-S-AKVLIHAGILPPLVKDLFTVGSN  132 (572)
Q Consensus        56 aa~~L~~l~~~~~~k~~i~~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~-~-~~~iv~~G~i~~Lv~lL~s~~~~  132 (572)
                      ++.+|..++..-..  .+.. .+ +.+...|.+.+..+|+.|+.+|..++.... . ... .-...+|.|+..|...   
T Consensus       348 a~~~l~~l~~~~~~--~~~~-~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~-~~~~~l~~l~~~l~d~---  420 (876)
T 1qgr_A          348 AGVCLMLLATCCED--DIVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDP---  420 (876)
T ss_dssp             HHHHHHHHHHHHGG--GGHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHH-HHHHHHHHHHHHHTCS---
T ss_pred             HHHHHHHHHHHCcH--hhHH-HHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHhCCC---
Confidence            88888887752211  1222 34 888888999999999999999999997543 2 112 2245789999999753   


Q ss_pred             CCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCC--------
Q 008257          133 HLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPT--------  204 (572)
Q Consensus       133 ~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~--------  204 (572)
                        .+.+|..|+++|++++.......    +   ..-.-..+++.|+..+.+. +.++..++++|..++....        
T Consensus       421 --~~~vr~~a~~~l~~~~~~~~~~~----~---~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~  490 (876)
T 1qgr_A          421 --SVVVRDTAAWTVGRICELLPEAA----I---NDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADD  490 (876)
T ss_dssp             --SHHHHHHHHHHHHHHHHHCGGGT----S---STTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTS
T ss_pred             --CHHHHHHHHHHHHHHHHhCchhc----c---cHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccc
Confidence              37899999999999987532100    0   0012356788888888774 8899999999988764310        


Q ss_pred             ----ccHHHHHHHHhcCChHHHHHHhcCC---C-----------------------------------------------
Q 008257          205 ----TVLSVVSAIKSSGATISLVQFVEAP---Q-----------------------------------------------  230 (572)
Q Consensus       205 ----~~~~~~~~i~~~g~i~~Lv~lL~~~---~-----------------------------------------------  230 (572)
                          ..+.....+  ...++.|+.++...   +                                               
T Consensus       491 ~~~~~~~~l~~~~--~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~  568 (876)
T 1qgr_A          491 QEEPATYCLSSSF--ELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHI  568 (876)
T ss_dssp             CCCCCCCSSTTTH--HHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSC
T ss_pred             cccccchhhhHhH--HHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence                000000000  11233444444322   1                                               


Q ss_pred             ---------HHHHHHHHHHHHHcCCCCC-hhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcH-HHHH
Q 008257          231 ---------NDLRLASIELIQNLSPHMG-HELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDL-GLTR  299 (572)
Q Consensus       231 ---------~~v~~~a~~~L~~Ls~~~~-~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~-~~~~  299 (572)
                               ++++..++.+|..++...+ ..+...+ .  ..++.|+.++.+......++..++.+++.++.... ....
T Consensus       569 ~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~--~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~  645 (876)
T 1qgr_A          569 QSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQIS-D--VVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLK  645 (876)
T ss_dssp             CSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTH-H--HHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHH-H--HHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHH
Confidence                     2234445555555554433 2221111 1  35677888887664112577788888877764211 1111


Q ss_pred             HHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccC-CcHHHH
Q 008257          300 QMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSN-GLDKVQ  378 (572)
Q Consensus       300 ~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~vk  378 (572)
                       .++ ..+|.++..|.+.         ....++..+++++..++...  .+.....+  ..+++.|++.|.++ .+..+|
T Consensus       646 -~~~-~~~~~l~~~l~~~---------~~~~vr~~a~~~l~~l~~~~--~~~~~~~~--~~i~~~l~~~l~~~~~~~~~~  710 (876)
T 1qgr_A          646 -YME-AFKPFLGIGLKNY---------AEYQVCLAAVGLVGDLCRAL--QSNIIPFC--DEVMQLLLENLGNENVHRSVK  710 (876)
T ss_dssp             -GHH-HHHHHHHHHHHHC---------TTHHHHHHHHHHHHHHHHHH--GGGGHHHH--HHHHHHHHHHHTCTTSCGGGH
T ss_pred             -HHH-HHHHHHHHHHcCc---------chHHHHHHHHHHHHHHHHHH--HHhhhhhH--HHHHHHHHHHhCCccccHHhh
Confidence             111 2567777777652         13556777888888776421  12222221  35778899999873 256799


Q ss_pred             HHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCC--
Q 008257          379 MVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTN--  456 (572)
Q Consensus       379 ~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~--  456 (572)
                      ..+++++++++...+..-.                                      . ++  ...+++|.+.+....  
T Consensus       711 ~~~~~~l~~i~~~~g~~~~--------------------------------------~-~l--~~~~~~l~~~~~~~~~~  749 (876)
T 1qgr_A          711 PQILSVFGDIALAIGGEFK--------------------------------------K-YL--EVVLNTLQQASQAQVDK  749 (876)
T ss_dssp             HHHHHHHHHHHHHHGGGGG--------------------------------------G-GH--HHHHHHHHHHHTCCCCT
T ss_pred             HHHHHHHHHHHHHhchhHH--------------------------------------H-HH--HHHHHHHHHHHhccCCC
Confidence            9999999998764321100                                      0 01  235667777775432  


Q ss_pred             --H-------hHHHHHHHHHHHhhhcCccc----hhhHHHHHhcCChHHHHHHHh---hcC--CHHHHHHHHHHHHHHHc
Q 008257          457 --E-------KVVEASLAALSTVIDDGVDI----EQGVMVLCEAQGIKPILDVLL---EKR--TENLQRRAVWVVERILR  518 (572)
Q Consensus       457 --~-------~v~~~A~~aL~~l~~~~~~~----~~~~~~i~~~g~i~~L~~lL~---~~~--~~~~~~~a~~~l~~l~~  518 (572)
                        +       .++..++.++..++..-...    ......+..  -++.++.++.   .++  ++.++..|+.+|..++.
T Consensus       750 ~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~  827 (876)
T 1qgr_A          750 SDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQP--RVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCT  827 (876)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGG--GHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHH--HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence              2       67777888887766421000    000000100  1233333331   345  68899999999999986


Q ss_pred             ch-h-hhhhhcCCCCchHHHHH-HhhcCCchhHHHHHHHHHhhcccCCCC
Q 008257          519 TD-D-IAYEVSGDPNVSTALVD-AFQHADYRTRQIAERALKHIDKIPNFS  565 (572)
Q Consensus       519 ~~-~-~~~~~~~~~~~~~~Lv~-ll~~~~~~~~~~Aa~aL~~L~~~~~~s  565 (572)
                      .- . .-..+... .+..+|++ .+.++++.+|+.|++|+.++.++..+|
T Consensus       828 ~~~~~~~~~~~~~-~~i~~ll~~~l~~~~~~~r~~a~~a~~~~~~~~~~~  876 (876)
T 1qgr_A          828 AFGKDVLKLVEAR-PMIHELLTEGRRSKTNKAKTLARWATKELRKLKNQA  876 (876)
T ss_dssp             HHCTHHHHHHHTS-HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HhCcHHHHHHHhc-HHHHHHHHHHhhcCCHhHHHHHHHHHHHHHHhhcCC
Confidence            52 2 12223222 33457887 888999999999999999999876543

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.45  E-value=2.7e-11  Score=138.22  Aligned_cols=471  Identities=11%  Similarity=0.093  Sum_probs=287.4

Q ss_pred             CCCCCHHHHHHHHHHHHhhccCcch------------------HHHHHHcCCcHHHHHHHccC-------CHHHHHHHHH
Q 008257            4 SKSENLLTVEKAEKTLANLEKCENN------------------VRQMAENGRLQPLLTQILEG-------PQETKLSLAA   58 (572)
Q Consensus         4 ~~s~~~~~~~~A~~~L~~L~~~~~n------------------~~~i~~~g~i~~Lv~~L~~~-------~~~~~~~aa~   58 (572)
                      +++.|+.++..|...+..++.....                  ..... ...++.++..|...       ...++..++.
T Consensus       275 ~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~  353 (861)
T 2bpt_A          275 MKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGA  353 (861)
T ss_dssp             TTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHH
T ss_pred             HcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHH
Confidence            3567888899999998888753211                  11111 23566777777642       3467888889


Q ss_pred             HHHHhccCcchhHHHHhhhH-HHHHHhcccCCHHHHHHHHHHHHHhhcCCC-c-HHHHHHcCChHHHHHHHhccCCCCCC
Q 008257           59 FLGDLALNSDVKVLVARTVG-SCLINIMKSGNMQAREAALKALNQISSCEP-S-AKVLIHAGILPPLVKDLFTVGSNHLP  135 (572)
Q Consensus        59 ~L~~l~~~~~~k~~i~~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~-~-~~~iv~~G~i~~Lv~lL~s~~~~~~~  135 (572)
                      +|..++..-.  ..+.. .+ +.+.+.|.+.+...++.|+.++..++.... . ....+ ...+|.|++.+...     .
T Consensus       354 ~L~~l~~~~~--~~~~~-~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~-----~  424 (861)
T 2bpt_A          354 CLQLFAQNCG--NHILE-PVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQ-----S  424 (861)
T ss_dssp             HHHHHHHHHG--GGGHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCS-----C
T ss_pred             HHHHHHHHcc--HhHHH-HHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCC-----c
Confidence            9988876221  11111 24 778888888899999999999999996532 1 11112 24677788877643     3


Q ss_pred             cchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCc--cHHHHHHH
Q 008257          136 MRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTT--VLSVVSAI  213 (572)
Q Consensus       136 ~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~--~~~~~~~i  213 (572)
                      +.+|..++++|+.++..-...    +.   ..-.-..+++.++..+.+. +.++..++++|..++.....  ...+...+
T Consensus       425 ~~vr~~a~~~l~~l~~~~~~~----~~---~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~  496 (861)
T 2bpt_A          425 LQVKETTAWCIGRIADSVAES----ID---PQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY  496 (861)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGG----SC---TTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH
T ss_pred             HHHHHHHHHHHHHHHHHhhhh----cC---CHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH
Confidence            789999999999998642110    00   0012356788899888775 89999999999888653110  00111111


Q ss_pred             HhcCChHHHHHHhcCCC--HHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccC-------------CCChH
Q 008257          214 KSSGATISLVQFVEAPQ--NDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISEN-------------VGISK  278 (572)
Q Consensus       214 ~~~g~i~~Lv~lL~~~~--~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~-------------~~~~~  278 (572)
                        ...++.|+.++...+  +.+|..++.++..+....+.+....+.   ..++.++..|...             +....
T Consensus       497 --~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~---~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~  571 (861)
T 2bpt_A          497 --PALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA---SISTFVMDKLGQTMSVDENQLTLEDAQSLQE  571 (861)
T ss_dssp             --HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH---HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHH
T ss_pred             --HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH---HHHHHHHHHHHHHHhhhcccCChhhHHHHHH
Confidence              234778888887544  689999999999998655544433333   2566677666532             11124


Q ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchh-hHHHHHHHHHHHHhccCCCChHHHHHHH
Q 008257          279 EQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVT-PFLEGLLSVLARVTFVLSDEPDAIALCC  357 (572)
Q Consensus       279 ~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~-~~~e~a~~aL~~l~~~~~~~~~~~~~i~  357 (572)
                      ++..+..+|.++...-........ ...++.++..+++.          .. .+++.++.++..++..  ...+....+-
T Consensus       572 ~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~----------~~~~v~~~~~~~l~~l~~~--~~~~~~~~l~  638 (861)
T 2bpt_A          572 LQSNILTVLAAVIRKSPSSVEPVA-DMLMGLFFRLLEKK----------DSAFIEDDVFYAISALAAS--LGKGFEKYLE  638 (861)
T ss_dssp             HHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHHHHHST----------TGGGTHHHHHHHHHHHHHH--HGGGGHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHHHccC----------CCCcHHHHHHHHHHHHHHH--HhhhHHHHHH
Confidence            566777777766532111101111 13456666666542          12 4577777777777643  1222332222


Q ss_pred             HcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchh
Q 008257          358 EHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETF  437 (572)
Q Consensus       358 ~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~  437 (572)
                        .++|.|.+.|+++ ++.++..+..++..++...+..                                         +
T Consensus       639 --~i~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~-----------------------------------------~  674 (861)
T 2bpt_A          639 --TFSPYLLKALNQV-DSPVSITAVGFIADISNSLEED-----------------------------------------F  674 (861)
T ss_dssp             --HHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHTGGG-----------------------------------------G
T ss_pred             --HHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHhchh-----------------------------------------c
Confidence              3789999999876 7889999999998887543210                                         0


Q ss_pred             hhhhccchHHHHHhhcCCC--HhHHHHHHHHHHHhhhcC-ccchhhHHHHHhcCChHHHHHHHhhcC----C-------H
Q 008257          438 CLLEGHAVEKLIALLDHTN--EKVVEASLAALSTVIDDG-VDIEQGVMVLCEAQGIKPILDVLLEKR----T-------E  503 (572)
Q Consensus       438 ~l~~~g~i~~Lv~lL~~~~--~~v~~~A~~aL~~l~~~~-~~~~~~~~~i~~~g~i~~L~~lL~~~~----~-------~  503 (572)
                      .-.-...++.+++.|.+.+  ..++..++.+++.++..- ..+.....     .-++.+++.+. ..    +       .
T Consensus       675 ~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~-----~~l~~l~~~~~-~~~~~~d~d~~~~~~  748 (861)
T 2bpt_A          675 RRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLN-----DIMALCVAAQN-TKPENGTLEALDYQI  748 (861)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHH-----HHHHHHHHHHT-CCCSSSSHHHHHHHH
T ss_pred             cchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHHh-cCCCCCChHHHHHHH
Confidence            0001346788888888764  889999999999998642 21221111     23567777773 32    1       3


Q ss_pred             HHHHHHHHHHHHHHcc-hhhhhhhcCC-CCchHHHHHHhhcC----CchhHHHHHHHHHhhcc
Q 008257          504 NLQRRAVWVVERILRT-DDIAYEVSGD-PNVSTALVDAFQHA----DYRTRQIAERALKHIDK  560 (572)
Q Consensus       504 ~~~~~a~~~l~~l~~~-~~~~~~~~~~-~~~~~~Lv~ll~~~----~~~~~~~Aa~aL~~L~~  560 (572)
                      .+++.+..++..++.. .+....+..- ..+...|...+.+.    +..+|+.|..+|..|..
T Consensus       749 ~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~  811 (861)
T 2bpt_A          749 KVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAA  811 (861)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHH
Confidence            4677777777777733 1101112110 01222444555553    78999999999999987

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.45  E-value=2.3e-11  Score=138.74  Aligned_cols=467  Identities=12%  Similarity=0.078  Sum_probs=296.0

Q ss_pred             CHHHHHHHHHHHHhhcc-CcchHH-HHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccC-c-chhHHHHhhhH-HHHH
Q 008257            8 NLLTVEKAEKTLANLEK-CENNVR-QMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALN-S-DVKVLVARTVG-SCLI   82 (572)
Q Consensus         8 ~~~~~~~A~~~L~~L~~-~~~n~~-~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~-~-~~k~~i~~~g~-~~Lv   82 (572)
                      ++.++..|.++|..+.. -+.+.. .......++.|...+.+++.++|..+..+|..++.. . .....+.. .+ +.++
T Consensus       194 ~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~-~l~~~~~  272 (861)
T 2bpt_A          194 SKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQ-ALYALTI  272 (861)
T ss_dssp             CHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHH-THHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence            78889999999988643 111110 011112456666777888899999999999988752 2 22222221 34 7778


Q ss_pred             HhcccCCHHHHHHHHHHHHHhhcCCCc------------------HHHHHHcCChHHHHHHHhccCCC--CCCcchHHHH
Q 008257           83 NIMKSGNMQAREAALKALNQISSCEPS------------------AKVLIHAGILPPLVKDLFTVGSN--HLPMRLKEVS  142 (572)
Q Consensus        83 ~lL~s~~~~~~~~A~~aL~~Ls~~~~~------------------~~~iv~~G~i~~Lv~lL~s~~~~--~~~~~~~~~a  142 (572)
                      ..+.+.+.+++..|+..+..++.....                  .... -...+|.|+..|.....+  +....++..|
T Consensus       273 ~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~il~~ll~~l~~~~~d~~d~~~~~r~~a  351 (861)
T 2bpt_A          273 ATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSS-IKDVVPNLLNLLTRQNEDPEDDDWNVSMSA  351 (861)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHH-HHHHHHHHHHHTTCCCCC-CCCCCHHHHHH
T ss_pred             HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHH-HHHHHHHHHHHHHhcccccccccCcHHHHH
Confidence            888888999999999999988764211                  1111 145678888888653211  1224788999


Q ss_pred             HHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHH
Q 008257          143 ATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISL  222 (572)
Q Consensus       143 a~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L  222 (572)
                      ..+|..++..-.+            -....+++.+...+.+.++..+..++.+|..++..... +.....+  ...++.|
T Consensus       352 ~~~L~~l~~~~~~------------~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~-~~~~~~l--~~il~~l  416 (861)
T 2bpt_A          352 GACLQLFAQNCGN------------HILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDK-VQRTYYV--HQALPSI  416 (861)
T ss_dssp             HHHHHHHHHHHGG------------GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCH-HHHHHHH--HHHHHHH
T ss_pred             HHHHHHHHHHccH------------hHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCH-HHHHHHH--HHHHHHH
Confidence            9999999864210            01234666677777788899999999999999976431 1222222  2468889


Q ss_pred             HHHhcCCCHHHHHHHHHHHHHcCCCCChhH--HHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCc-----H
Q 008257          223 VQFVEAPQNDLRLASIELIQNLSPHMGHEL--ADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERD-----L  295 (572)
Q Consensus       223 v~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~--~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~-----~  295 (572)
                      +..+.++++.+|..++++|..++...+..+  ...+.   ..++.|++.|.++ .  .++..|.++|.+++..-     .
T Consensus       417 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~---~~l~~l~~~l~~~-~--~v~~~a~~al~~l~~~~~~~~~~  490 (861)
T 2bpt_A          417 LNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLP---GVVQACLIGLQDH-P--KVATNCSWTIINLVEQLAEATPS  490 (861)
T ss_dssp             HHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHH---HHHHHHHHHHTSC-H--HHHHHHHHHHHHHHHHHSSSSSC
T ss_pred             HHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHH---HHHHHHHHHhccC-h--HHHHHHHHHHHHHHHhcccccch
Confidence            999999999999999999998874321110  00111   3577888888664 3  78888888888765311     1


Q ss_pred             HHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccC---
Q 008257          296 GLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSN---  372 (572)
Q Consensus       296 ~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~---  372 (572)
                      .....+  ...++.|+.++.+..        ....++..++.++..+...  ...+....+.  .++|.+++.|...   
T Consensus       491 ~l~~~~--~~il~~L~~~l~~~d--------~~~~vr~~a~~al~~l~~~--~~~~~~~~~~--~l~~~l~~~l~~~~~~  556 (861)
T 2bpt_A          491 PIYNFY--PALVDGLIGAANRID--------NEFNARASAFSALTTMVEY--ATDTVAETSA--SISTFVMDKLGQTMSV  556 (861)
T ss_dssp             GGGGGH--HHHHHHHHHHHTCSC--------CGGGHHHHHHHHHHHHHHH--CCGGGHHHHH--HHHHHHHHHHHHHTTS
T ss_pred             hhHHHH--HHHHHHHHHHHhCcC--------cchHHHHHHHHHHHHHHHH--cchhhHHHHH--HHHHHHHHHHHHHHhh
Confidence            111111  123556666665311        1245677788888887754  2233333222  3677788777631   


Q ss_pred             -----------CcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhh
Q 008257          373 -----------GLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLE  441 (572)
Q Consensus       373 -----------~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~  441 (572)
                                 ....++..+..+|.+++...+....                                      .+   -
T Consensus       557 ~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~--------------------------------------~~---~  595 (861)
T 2bpt_A          557 DENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVE--------------------------------------PV---A  595 (861)
T ss_dssp             CGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTG--------------------------------------GG---H
T ss_pred             hcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhH--------------------------------------HH---H
Confidence                       0345777888888888764331100                                      00   1


Q ss_pred             ccchHHHHHhhcCCCH-hHHHHHHHHHHHhhhcCc-cchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcc
Q 008257          442 GHAVEKLIALLDHTNE-KVVEASLAALSTVIDDGV-DIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRT  519 (572)
Q Consensus       442 ~g~i~~Lv~lL~~~~~-~v~~~A~~aL~~l~~~~~-~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~  519 (572)
                      ...++.+++++++.+. .+++.++.+++.++.... .+..   .+-  .-++.+.+.+ .+.++.++..++.++..++..
T Consensus       596 ~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~---~l~--~i~~~l~~~l-~~~~~~vr~~a~~~l~~l~~~  669 (861)
T 2bpt_A          596 DMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEK---YLE--TFSPYLLKAL-NQVDSPVSITAVGFIADISNS  669 (861)
T ss_dssp             HHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHH---HHH--HHHHHHHHHH-HCTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHH---HHH--HHHHHHHHHh-ccccHHHHHHHHHHHHHHHHH
Confidence            2367788888888777 899999999999885321 1111   111  2457788888 578888999999999888754


Q ss_pred             -hhhhhhhcCCCCchHHHHHHhhcCC--chhHHHHHHHHHhhcc
Q 008257          520 -DDIAYEVSGDPNVSTALVDAFQHAD--YRTRQIAERALKHIDK  560 (572)
Q Consensus       520 -~~~~~~~~~~~~~~~~Lv~ll~~~~--~~~~~~Aa~aL~~L~~  560 (572)
                       .+.-..+..  .+...|++.+.+.+  +.+|..+..+|..+.+
T Consensus       670 ~~~~~~~~~~--~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~  711 (861)
T 2bpt_A          670 LEEDFRRYSD--AMMNVLAQMISNPNARRELKPAVLSVFGDIAS  711 (861)
T ss_dssp             TGGGGHHHHH--HHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHH
T ss_pred             hchhccchHH--HHHHHHHHHhCCccccHhhhHHHHHHHHHHHH
Confidence             211112221  23346778888765  8899999999988876

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.40  E-value=1.9e-10  Score=126.08  Aligned_cols=258  Identities=10%  Similarity=0.099  Sum_probs=185.8

Q ss_pred             HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCc
Q 008257           79 SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDS  158 (572)
Q Consensus        79 ~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~  158 (572)
                      +..++++.+.+.+.++-+.-++..++..++....    -++..|.+-|.++     ++.++..|.++|+++...      
T Consensus        73 ~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~----l~in~l~kDL~~~-----n~~vr~lAL~~L~~i~~~------  137 (618)
T 1w63_A           73 LECLKLIASQKFTDKRIGYLGAMLLLDERQDVHL----LMTNCIKNDLNHS-----TQFVQGLALCTLGCMGSS------  137 (618)
T ss_dssp             HHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHH----HHHHHHHHHHSCS-----SSHHHHHHHHHHHHHCCH------
T ss_pred             HHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHH----HHHHHHHHhcCCC-----CHhHHHHHHHHHHhcCCH------
Confidence            8888999999999999988899998865432212    2567777777754     378999999999999631      


Q ss_pred             cccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHH
Q 008257          159 ITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASI  238 (572)
Q Consensus       159 ~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~  238 (572)
                              . ..+..++.+.++|.+.++.++..|+.++..+.....   +..     .+.++.+..+|.+.++.++..|+
T Consensus       138 --------~-~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p---~~v-----~~~~~~l~~lL~D~d~~V~~~Al  200 (618)
T 1w63_A          138 --------E-MCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVP---ELM-----EMFLPATKNLLNEKNHGVLHTSV  200 (618)
T ss_dssp             --------H-HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCG---GGG-----GGGGGGTTTSTTCCCHHHHHHHH
T ss_pred             --------H-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCh---HHH-----HHHHHHHHHHhCCCCHhHHHHHH
Confidence                    1 125678999999999999999999999999976432   111     25788888999999999999999


Q ss_pred             HHHHHcCCCCChhHHHHHhcccCChhhHHhhhcc---------------CCCChHHHHHHHHHHhcCCCCcHHHHHHHHh
Q 008257          239 ELIQNLSPHMGHELADALRGAVGQLGSLIRVISE---------------NVGISKEQAAAVGLLAELPERDLGLTRQMLD  303 (572)
Q Consensus       239 ~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~---------------~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~  303 (572)
                      .+|..++...+ +..+.+.   ..++.|+++|..               .+  +-.+...+.+|+.++..+++..+    
T Consensus       201 ~~L~~i~~~~~-~~~~~~~---~~v~~l~~~L~~~~~~~~~~~~~~~~~~~--~~~q~~il~~L~~l~~~~~~~~~----  270 (618)
T 1w63_A          201 VLLTEMCERSP-DMLAHFR---KLVPQLVRILKNLIMSGYSPEHDVSGISD--PFLQVRILRLLRILGRNDDDSSE----  270 (618)
T ss_dssp             HHHHHHCCSHH-HHHHHHH---TTHHHHHHHHHHHHHSCCCTTTCSSSSSC--HHHHHHHHHHHHHHTTTCHHHHH----
T ss_pred             HHHHHHHHhCh-HHHHHHH---HHHHHHHHHHHHHHcCCCCccccccCCCC--ChHHHHHHHHHHHhCCCCHHHHH----
Confidence            99999987632 2222333   468888887764               23  36777888999998887765433    


Q ss_pred             CCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHH
Q 008257          304 EGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSAT  383 (572)
Q Consensus       304 ~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~  383 (572)
                       ..++.|..++......    ......+.-.++.++..+.    .++..+.     .+++.|..+|.++ ++.+|..|..
T Consensus       271 -~~~~~L~~l~~~~~~~----~~~~~aV~~ea~~~i~~l~----~~~~l~~-----~a~~~L~~~L~~~-d~~vr~~aL~  335 (618)
T 1w63_A          271 -AMNDILAQVATNTETS----KNVGNAILYETVLTIMDIK----SESGLRV-----LAINILGRFLLNN-DKNIRYVALT  335 (618)
T ss_dssp             -TTHHHHHHHHHTSCCS----STHHHHHHHHHHHHHHHSC----CCHHHHH-----HHHHHHHHHHTCS-STTTHHHHHH
T ss_pred             -HHHHHHHHHHhccccc----cchHHHHHHHHHHHHHhcC----CCHHHHH-----HHHHHHHHHHhCC-CCchHHHHHH
Confidence             3455666665431100    0124456667888888775    3454332     3568889999988 8899999999


Q ss_pred             HHHHhhhhcc
Q 008257          384 ALENLSLESK  393 (572)
Q Consensus       384 aL~~ls~~~~  393 (572)
                      +|..++...+
T Consensus       336 ~L~~i~~~~p  345 (618)
T 1w63_A          336 SLLKTVQTDH  345 (618)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHhhCH
Confidence            9999886544

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.35  E-value=6.5e-10  Score=131.90  Aligned_cols=480  Identities=13%  Similarity=0.091  Sum_probs=288.6

Q ss_pred             CCCCCHHHHHHHHHHHHhhccCcchH-HHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhH-HHH
Q 008257            4 SKSENLLTVEKAEKTLANLEKCENNV-RQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVG-SCL   81 (572)
Q Consensus         4 ~~s~~~~~~~~A~~~L~~L~~~~~n~-~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~L   81 (572)
                      +.|.|+..+..|..-|.+....+... ..-.....++.|++.|.+.++++|..|+.+|..++..-..  ... ..+ +.|
T Consensus        15 l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~~~-~~i~~~L   91 (1230)
T 1u6g_C           15 MTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--YQV-ETIVDTL   91 (1230)
T ss_dssp             TTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--HHH-HHHHHHH
T ss_pred             cCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--HHH-HHHHHHH
Confidence            46788998988888777654432110 0001123567788889989999999999999998762211  111 234 888


Q ss_pred             HHhcccCCHHHHHHHHHHHHHhhcCCCcH------HHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCC
Q 008257           82 INIMKSGNMQAREAALKALNQISSCEPSA------KVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHD  155 (572)
Q Consensus        82 v~lL~s~~~~~~~~A~~aL~~Ls~~~~~~------~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~  155 (572)
                      ++.|.++++.+|..|+.+|..++..-...      ..-.-...+|.|++.+.+.    .+..++..|..+|..++.....
T Consensus        92 l~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~----~~~~~~~~al~~l~~~~~~~~~  167 (1230)
T 1u6g_C           92 CTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQ----EDVSVQLEALDIMADMLSRQGG  167 (1230)
T ss_dssp             HHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCC----SCHHHHHHHHHHHHHHHHHTCS
T ss_pred             HHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCC----CchHHHHHHHHHHHHHHHHhHh
Confidence            99998888899999999999998532211      1112345788999988631    2378999999999999864321


Q ss_pred             CCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCcc------HHHHH------------------
Q 008257          156 FDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTV------LSVVS------------------  211 (572)
Q Consensus       156 ~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~------~~~~~------------------  211 (572)
                      .    +.     -.....++.|+..|.++++.++..++.+|..++......      +.+..                  
T Consensus       168 ~----l~-----~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l  238 (1230)
T 1u6g_C          168 L----LV-----NFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCI  238 (1230)
T ss_dssp             S----CT-----TTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHH
T ss_pred             H----HH-----HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHH
Confidence            1    00     022567888888888888899999999988877542210      00000                  


Q ss_pred             -HHHh----------cCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCC------
Q 008257          212 -AIKS----------SGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENV------  274 (572)
Q Consensus       212 -~i~~----------~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~------  274 (572)
                       .+.+          ...++.++..+...++++|..++.++..++...+.++...+.   ..++.+++.+..+.      
T Consensus       239 ~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~---~li~~ll~~l~~d~~~~~~~  315 (1230)
T 1u6g_C          239 AAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVS---TIINICLKYLTYDPNYNYDD  315 (1230)
T ss_dssp             HHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHH---HHHHHHTTCCCCC-------
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHH---HHHHHHHHHhCCCCCCCCcc
Confidence             1111          234667777777777889999998888887544433322222   24566666554210      


Q ss_pred             ----------------------------C-ChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCC
Q 008257          275 ----------------------------G-ISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGS  325 (572)
Q Consensus       275 ----------------------------~-~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~  325 (572)
                                                  + ..++|..|+.++..++...++....+. ...+|.++..+.+         
T Consensus       316 d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d---------  385 (1230)
T 1u6g_C          316 EDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKE---------  385 (1230)
T ss_dssp             -----------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSC---------
T ss_pred             cccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHH-HHHHHHHHHHcCC---------
Confidence                                        0 013466676666665442222111222 2345555554433         


Q ss_pred             cchhhHHHHHHHHHHHHhccCCC------Ch-------HHHHHH--HHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhh
Q 008257          326 RFVTPFLEGLLSVLARVTFVLSD------EP-------DAIALC--CEHNLAALFIELLQSNGLDKVQMVSATALENLSL  390 (572)
Q Consensus       326 ~~~~~~~e~a~~aL~~l~~~~~~------~~-------~~~~~i--~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~  390 (572)
                       ....++..++.++..+......      ++       .....+  .-..++|.+.+.|+++ ++.+|..+..+|..++.
T Consensus       386 -~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~-~~~vr~~~~~~L~~l~~  463 (1230)
T 1u6g_C          386 -REENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEK-SVKTRQCCFNMLTELVN  463 (1230)
T ss_dssp             -SSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHH
T ss_pred             -CchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccC-CHHHHHHHHHHHHHHHH
Confidence             1345566666666555421000      00       001111  1123556666778888 88899888888888875


Q ss_pred             hccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCH--hHHHHHHHHHH
Q 008257          391 ESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNE--KVVEASLAALS  468 (572)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~--~v~~~A~~aL~  468 (572)
                      ..+..              +                       . . +  -...++.++++|.+.++  .++..++.++.
T Consensus       464 ~~~~~--------------l-----------------------~-~-~--l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~  502 (1230)
T 1u6g_C          464 VLPGA--------------L-----------------------T-Q-H--IPVLVPGIIFSLNDKSSSSNLKIDALSCLY  502 (1230)
T ss_dssp             HSTTT--------------T-----------------------G-G-G--HHHHHHHHHHHTTCSSSCHHHHHHHHHHHH
T ss_pred             Hchhh--------------h-----------------------H-H-H--HHHHHHHHHHHHcCCCCcchHHHHHHHHHH
Confidence            42100              0                       0 0 0  12367888999987654  89999999999


Q ss_pred             HhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcc-hh-------hhhhhcCCCCchHHHHHHh
Q 008257          469 TVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRT-DD-------IAYEVSGDPNVSTALVDAF  540 (572)
Q Consensus       469 ~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~-~~-------~~~~~~~~~~~~~~Lv~ll  540 (572)
                      .+...... +.....+  ..-++.++..+ .+++..++..|+.++..++.. ..       .-..+..  .+.+.|+..+
T Consensus       503 ~~~~~~~~-~~~~~~l--~~llp~L~~~l-~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~--~ll~~ll~~l  576 (1230)
T 1u6g_C          503 VILCNHSP-QVFHPHV--QALVPPVVACV-GDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIK--DLFTCTIKRL  576 (1230)
T ss_dssp             HHHHSSCG-GGGHHHH--TTTHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHH--HHHHHHHHHH
T ss_pred             HHHHhCCH-HHHHhHH--HHHHHHHHHHH-cccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHH--HHHHHHHHHH
Confidence            88753210 1111111  24577888888 477777877888888877743 11       0011111  1223567777


Q ss_pred             --hcCCchhHHHHHHHHHhhccc
Q 008257          541 --QHADYRTRQIAERALKHIDKI  561 (572)
Q Consensus       541 --~~~~~~~~~~Aa~aL~~L~~~  561 (572)
                        .+.++.+|..|..+|..|...
T Consensus       577 ~~~d~~~~vr~~a~~~lg~L~~~  599 (1230)
T 1u6g_C          577 KAADIDQEVKERAISCMGQIICN  599 (1230)
T ss_dssp             SCSSSCHHHHHHHHHHHHHHHHH
T ss_pred             hccCCCHHHHHHHHHHHHHHHHH
Confidence              566788999999999988764

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.35  E-value=3.1e-11  Score=113.38  Aligned_cols=188  Identities=16%  Similarity=0.193  Sum_probs=153.9

Q ss_pred             cCCcHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhHHHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHH
Q 008257           35 NGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLI  114 (572)
Q Consensus        35 ~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv  114 (572)
                      .+.++.|++.|++++..+|..++..|..+..         ...++.|+++|+++++.++..|+++|..+..         
T Consensus        18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~---------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~---------   79 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD---------ERAVEPLIKALKDEDAWVRRAAADALGQIGD---------   79 (211)
T ss_dssp             GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC---------
T ss_pred             HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC---------
Confidence            4568999999999999999999999987643         1234999999999999999999999999753         


Q ss_pred             HcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHH
Q 008257          115 HAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQ  194 (572)
Q Consensus       115 ~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~  194 (572)
                       .++++.|+++|.+.     ++.++..|+++|+++..                   ...++.|+.++.++++.++..+++
T Consensus        80 -~~~~~~L~~~l~~~-----~~~vr~~a~~aL~~~~~-------------------~~~~~~L~~~l~d~~~~vr~~a~~  134 (211)
T 3ltm_A           80 -ERAVEPLIKALKDE-----DGWVRQSAAVALGQIGD-------------------ERAVEPLIKALKDEDWFVRIAAAF  134 (211)
T ss_dssp             -GGGHHHHHHHTTCS-----SHHHHHHHHHHHHHHCC-------------------GGGHHHHHHHTTCSSHHHHHHHHH
T ss_pred             -HHHHHHHHHHHcCC-----CHHHHHHHHHHHHHhCc-------------------HHHHHHHHHHHhCCCHHHHHHHHH
Confidence             35789999999754     37899999999998842                   346899999999999999999999


Q ss_pred             HHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCC
Q 008257          195 VLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENV  274 (572)
Q Consensus       195 aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~  274 (572)
                      +|..+..              ...++.|..+++++++.+|..|+.+|..+...             .+++.|..++.+++
T Consensus       135 aL~~~~~--------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-------------~~~~~L~~~l~d~~  187 (211)
T 3ltm_A          135 ALGEIGD--------------ERAVEPLIKALKDEDGWVRQSAADALGEIGGE-------------RVRAAMEKLAETGT  187 (211)
T ss_dssp             HHHHHCC--------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCSH-------------HHHHHHHHHHHHCC
T ss_pred             HHHHcCC--------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCch-------------hHHHHHHHHHhCCC
Confidence            9987742              34788999999999999999999999988431             24677888888777


Q ss_pred             CChHHHHHHHHHHhcCCCCc
Q 008257          275 GISKEQAAAVGLLAELPERD  294 (572)
Q Consensus       275 ~~~~~~~~A~~~L~~L~~~~  294 (572)
                      .  .++..|..+|.++....
T Consensus       188 ~--~vr~~A~~aL~~~~~~~  205 (211)
T 3ltm_A          188 G--FARKVAVNYLETHKSFN  205 (211)
T ss_dssp             H--HHHHHHHHHHHC-----
T ss_pred             H--HHHHHHHHHHHhcCCCC
Confidence            5  89999999999987643

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.34  E-value=1.2e-10  Score=133.02  Aligned_cols=430  Identities=11%  Similarity=0.093  Sum_probs=267.3

Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhH-HHHHHhccc--CCHHHHHHHHHHHHHhhcCC-CcHHHH--
Q 008257           40 PLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVG-SCLINIMKS--GNMQAREAALKALNQISSCE-PSAKVL--  113 (572)
Q Consensus        40 ~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~Lv~lL~s--~~~~~~~~A~~aL~~Ls~~~-~~~~~i--  113 (572)
                      .++.-+.+++.++|..|...|.++..+       ...+. +.|+..|.+  .++.+|..|+-+|.+..... +.++..  
T Consensus         5 ~~L~~~~s~d~~~r~~A~~~L~~~~~~-------~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~   77 (876)
T 1qgr_A            5 TILEKTVSPDRLELEAAQKFLERAAVE-------NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQ   77 (876)
T ss_dssp             HHHHGGGCSCHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHhc-------ChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHH
Confidence            344455677888999999988764321       01355 888888876  35889999999999965432 111110  


Q ss_pred             ---------HHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcC
Q 008257          114 ---------IHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNT  184 (572)
Q Consensus       114 ---------v~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~  184 (572)
                               .....-+.|++.|.+.     ++.+ ..++.+++.++.......           .-...++.|+..+.++
T Consensus        78 ~~w~~l~~~~~~~ik~~ll~~l~~~-----~~~~-~~~~~~l~~i~~~~~~~~-----------~w~~ll~~l~~~l~~~  140 (876)
T 1qgr_A           78 QRWLAIDANARREVKNYVLHTLGTE-----TYRP-SSASQCVAGIACAEIPVN-----------QWPELIPQLVANVTNP  140 (876)
T ss_dssp             HHHHTSCHHHHHHHHHHHHHHTTTC-----CSSS-CHHHHHHHHHHHHHGGGT-----------CCTTHHHHHHHHHHCT
T ss_pred             hhhccCCHHHHHHHHHHHHHHhCCC-----cHHH-HHHHHHHHHHHHhhCccc-----------ccHHHHHHHHHHHhCC
Confidence                     0111223377777653     2455 789999999987521000           1145799999999988


Q ss_pred             --ChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCC--CHHHHHHHHHHHHHcCCCCChhHHHHHhccc
Q 008257          185 --GPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAP--QNDLRLASIELIQNLSPHMGHELADALRGAV  260 (572)
Q Consensus       185 --~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~  260 (572)
                        ++.++..++.+|..++..... +.....  -...++.+...+.++  +..+|..|+++|..+....+.......... 
T Consensus       141 ~~~~~~r~~al~~l~~l~~~~~~-~~~~~~--~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~-  216 (876)
T 1qgr_A          141 NSTEHMKESTLEAIGYICQDIDP-EQLQDK--SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERH-  216 (876)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHSCH-HHHGGG--HHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHH-
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCH-hhHHhH--HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-
Confidence              899999999999988764211 111100  123466777788776  578999999999988754222211011111 


Q ss_pred             CChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHH
Q 008257          261 GQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLA  340 (572)
Q Consensus       261 g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~  340 (572)
                      ..++.+...+..++.  +++..+..+|..+....+......+....++.++..+.+          ....+...++..+.
T Consensus       217 ~il~~l~~~~~~~~~--~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~~~v~~~al~~l~  284 (876)
T 1qgr_A          217 FIMQVVCEATQCPDT--RVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKS----------DIDEVALQGIEFWS  284 (876)
T ss_dssp             HHHHHHHHHTTCSSH--HHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTC----------SSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCH--HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcC----------CchHHHHHHHHHHH
Confidence            246666777766554  888889888888765333322233334567777666543          23455666777666


Q ss_pred             HHhccCC------------------CChHHHHHHHHcCchHHHHHHhccC------CcHHHHHHHHHHHHHhhhhccccC
Q 008257          341 RVTFVLS------------------DEPDAIALCCEHNLAALFIELLQSN------GLDKVQMVSATALENLSLESKNLT  396 (572)
Q Consensus       341 ~l~~~~~------------------~~~~~~~~i~~~g~i~~Lv~lL~~~------~~~~vk~~Aa~aL~~ls~~~~~~~  396 (572)
                      .++....                  ......+... ..++|.+++.|...      .+..+|..|+.+|..++...+.. 
T Consensus       285 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~-  362 (876)
T 1qgr_A          285 NVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD-  362 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG-
T ss_pred             HHHHHHHhHhhhhccccccCCCccchhHHHHHHHH-HHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHh-
Confidence            6652100                  0000111011 24577888887531      14568888888888887532200 


Q ss_pred             CCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCcc
Q 008257          397 KLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVD  476 (572)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~  476 (572)
                                                                ++ ...++.+.+.|.+.+..++.+|+.+|+.++.....
T Consensus       363 ------------------------------------------~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~  399 (876)
T 1qgr_A          363 ------------------------------------------IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEP  399 (876)
T ss_dssp             ------------------------------------------GH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCH
T ss_pred             ------------------------------------------hH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCH
Confidence                                                      11 13567777888899999999999999999854210


Q ss_pred             chhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcc-hhh--hhhhcCCCCchHHHHHHhhcCCchhHHHHHH
Q 008257          477 IEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRT-DDI--AYEVSGDPNVSTALVDAFQHADYRTRQIAER  553 (572)
Q Consensus       477 ~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~-~~~--~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~  553 (572)
                       +.....+  .+.++.++..| .++++.++..|++++.+++.. ...  ...+..  .+...|++.+.+. ++++..|++
T Consensus       400 -~~~~~~~--~~~l~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~--~~l~~l~~~l~~~-~~v~~~a~~  472 (876)
T 1qgr_A          400 -SQLKPLV--IQAMPTLIELM-KDPSVVVRDTAAWTVGRICELLPEAAINDVYLA--PLLQCLIEGLSAE-PRVASNVCW  472 (876)
T ss_dssp             -HHHHHHH--HHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHH--HHHHHHHHHTTSC-HHHHHHHHH
T ss_pred             -HHHHHHH--HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHhCchhcccHHHHH--HHHHHHHHHHcCC-HHHHHHHHH
Confidence             0111111  23578888999 588899999999999999865 211  011111  2224677788774 899999999


Q ss_pred             HHHhhccc
Q 008257          554 ALKHIDKI  561 (572)
Q Consensus       554 aL~~L~~~  561 (572)
                      +|..+...
T Consensus       473 al~~l~~~  480 (876)
T 1qgr_A          473 AFSSLAEA  480 (876)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998864

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.32  E-value=4.4e-11  Score=112.34  Aligned_cols=192  Identities=18%  Similarity=0.169  Sum_probs=150.1

Q ss_pred             CChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHH
Q 008257          261 GQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLA  340 (572)
Q Consensus       261 g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~  340 (572)
                      ..++.|+++|.+++.  .++..|+..|..+..           .++++.|+.+|.+          .+..++..++.+|.
T Consensus        19 ~~~~~L~~~L~~~~~--~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~----------~~~~vr~~a~~aL~   75 (211)
T 3ltm_A           19 EKVEMYIKNLQDDSY--YVRRAAAYALGKIGD-----------ERAVEPLIKALKD----------EDAWVRRAAADALG   75 (211)
T ss_dssp             GGHHHHHHHTTCSSH--HHHHHHHHHHHHHCC-----------GGGHHHHHHHTTC----------SCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHcCCCH--HHHHHHHHHHHHhCC-----------ccHHHHHHHHHcC----------CCHHHHHHHHHHHH
Confidence            678999999998775  899999999887643           3678899999876          24667888999998


Q ss_pred             HHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCcc
Q 008257          341 RVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVI  420 (572)
Q Consensus       341 ~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (572)
                      ++.     ++         +.+|.|+++|+++ ++.++..|+.+|+.+.                               
T Consensus        76 ~~~-----~~---------~~~~~L~~~l~~~-~~~vr~~a~~aL~~~~-------------------------------  109 (211)
T 3ltm_A           76 QIG-----DE---------RAVEPLIKALKDE-DGWVRQSAAVALGQIG-------------------------------  109 (211)
T ss_dssp             HHC-----CG---------GGHHHHHHHTTCS-SHHHHHHHHHHHHHHC-------------------------------
T ss_pred             hhC-----CH---------HHHHHHHHHHcCC-CHHHHHHHHHHHHHhC-------------------------------
Confidence            875     33         4679999999998 9999999999998763                               


Q ss_pred             ccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhc
Q 008257          421 TGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEK  500 (572)
Q Consensus       421 ~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~  500 (572)
                                          +..+++.|+++|+++++.|+..|+.+|+.+..              ..+++.|.+++ .+
T Consensus       110 --------------------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------------~~~~~~L~~~l-~d  154 (211)
T 3ltm_A          110 --------------------DERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------------ERAVEPLIKAL-KD  154 (211)
T ss_dssp             --------------------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------------GGGHHHHHHHT-TC
T ss_pred             --------------------cHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHH-cC
Confidence                                12478999999999999999999999998842              13578888999 58


Q ss_pred             CCHHHHHHHHHHHHHHHcchhhhhhhcCCCCchHHHHHHhhcCCchhHHHHHHHHHhhcccCCCCCC
Q 008257          501 RTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHIDKIPNFSGI  567 (572)
Q Consensus       501 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~~s~~  567 (572)
                      +++.++..|+.+|.++-.           ......|.++++++++.+|..|..+|..+...+...+.
T Consensus       155 ~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~~~~~  210 (211)
T 3ltm_A          155 EDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFNHHHHH  210 (211)
T ss_dssp             SSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC----------
T ss_pred             CCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCCCC
Confidence            999999999999988732           12224799999999999999999999999886655443

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.30  E-value=1e-10  Score=123.17  Aligned_cols=387  Identities=10%  Similarity=0.089  Sum_probs=247.2

Q ss_pred             CCCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccC--CHHHHHHHHHHHHHhccCcc-hh--------HHH
Q 008257            5 KSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEG--PQETKLSLAAFLGDLALNSD-VK--------VLV   73 (572)
Q Consensus         5 ~s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~--~~~~~~~aa~~L~~l~~~~~-~k--------~~i   73 (572)
                      .|.|+.+++.|...|..+...+       ..+++..|+..|.++  +..+|..|+..|.++..... .+        ..+
T Consensus        11 ~s~d~~~r~~Ae~~L~~~~~~~-------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l   83 (462)
T 1ibr_B           11 VSPDRLELEAAQKFLERAAVEN-------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAI   83 (462)
T ss_dssp             TCSCHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTS
T ss_pred             cCCCHHHHHHHHHHHHHHHhhC-------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcC
Confidence            5788889999999888866421       124556777777765  57889999999999764221 10        011


Q ss_pred             ---HhhhH-HHHHHhcccCCHHHHHHHHHHHHHhhcCC--C-cHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHH
Q 008257           74 ---ARTVG-SCLINIMKSGNMQAREAALKALNQISSCE--P-SAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATIL  146 (572)
Q Consensus        74 ---~~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~--~-~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L  146 (572)
                         ....+ ..|++.|.++++.+ ..++.++..++..+  + .+     .+.+|.|++.+.+..   .++.+++.|..+|
T Consensus        84 ~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w-----~~ll~~L~~~l~~~~---~~~~~r~~al~~l  154 (462)
T 1ibr_B           84 DANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQW-----PELIPQLVANVTNPN---STEHMKESTLEAI  154 (462)
T ss_dssp             CHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCC-----TTHHHHHHHHHHCTT---CCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccccc-----HHHHHHHHHHhccCC---CCHHHHHHHHHHH
Confidence               12345 77889998888778 88999999998642  1 22     467899999997630   0378999999999


Q ss_pred             HHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcC--ChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHH
Q 008257          147 ANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNT--GPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQ  224 (572)
Q Consensus       147 ~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~--~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~  224 (572)
                      ..++.....  . ..     .-.....++.++..+.+.  +++++..+++++..+...-..  .........-.++.|..
T Consensus       155 ~~l~~~~~~--~-~~-----~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~--~~~~~~~~~~l~~~l~~  224 (462)
T 1ibr_B          155 GYICQDIDP--E-QL-----QDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA--NFDKESERHFIMQVVCE  224 (462)
T ss_dssp             HHHHHHSCG--G-GT-----GGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH--HHTSHHHHHHHHHHHHH
T ss_pred             HHHHHhCCc--h-hh-----HhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH--hhhhhHHHHHHHHHHHH
Confidence            999874210  0 00     112245788888999877  789999999999987643210  00000001113666777


Q ss_pred             HhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHh-
Q 008257          225 FVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLD-  303 (572)
Q Consensus       225 lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~-  303 (572)
                      ++.++++++|..++++|..+....+..+...+..  ..++.++..+...++  .++..|+..+..++...... ..+.+ 
T Consensus       225 ~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~--~v~~~a~~~l~~~~~~~~~~-~~~~~~  299 (462)
T 1ibr_B          225 ATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGP--ALFAITIEAMKSDID--EVALQGIEFWSNVCDEEMDL-AIEASE  299 (462)
T ss_dssp             HTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTT--THHHHHHHHHHCSSH--HHHHHHHHHHHHHHHHHHHH-HHHHCC
T ss_pred             hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHcCCch--HHHHHHHHHHHHHHHHHHHH-HHhccc
Confidence            7788889999999999998875433222111110  245566666666554  78888888777765421110 00100 


Q ss_pred             --------------------CCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchH
Q 008257          304 --------------------EGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAA  363 (572)
Q Consensus       304 --------------------~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~  363 (572)
                                          ...+|.++..+.+......+   ....++..++.+|..++...   ++   .+. ..++|
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~---~~~~~r~~a~~~L~~l~~~~---~~---~~~-~~~~~  369 (462)
T 1ibr_B          300 AAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDD---DDWNPCKAAGVCLMLLATCC---ED---DIV-PHVLP  369 (462)
T ss_dssp             TTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCT---TCCSHHHHHHHHHHHHHHHT---TT---THH-HHHHH
T ss_pred             ccccCCCccchhHHHHHHHhhhccHHHHHHHHhccccccc---ccchHHHHHHHHHHHHHHhc---cH---HHH-HHHHH
Confidence                                22455555555432100000   12245667778887777542   11   111 24678


Q ss_pred             HHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhcc
Q 008257          364 LFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGH  443 (572)
Q Consensus       364 ~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g  443 (572)
                      .+.+.|+++ +..+|..|..+++.++...... .                +                   ..  .  -..
T Consensus       370 ~l~~~l~~~-~~~~r~aal~~l~~l~~~~~~~-~----------------~-------------------~~--~--l~~  408 (462)
T 1ibr_B          370 FIKEHIKNP-DWRYRDAAVMAFGCILEGPEPS-Q----------------L-------------------KP--L--VIQ  408 (462)
T ss_dssp             HHHHHTTCS-SHHHHHHHHHHHHHTSSSSCTT-T----------------T-------------------CT--T--TTT
T ss_pred             HHHHHhcCC-ChHHHHHHHHHHHHHhcCCcHH-H----------------H-------------------HH--H--HHH
Confidence            888888888 8999999999999988532100 0                0                   00  0  135


Q ss_pred             chHHHHHhhcCCCHhHHHHHHHHHHHhhhc
Q 008257          444 AVEKLIALLDHTNEKVVEASLAALSTVIDD  473 (572)
Q Consensus       444 ~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~  473 (572)
                      .+|.|+++|.++++.|+.+|+++|+.++..
T Consensus       409 ~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~  438 (462)
T 1ibr_B          409 AMPTLIELMKDPSVVVRDTAAWTVGRICEL  438 (462)
T ss_dssp             HHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence            889999999999999999999999999864

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.30  E-value=6.2e-11  Score=110.41  Aligned_cols=184  Identities=16%  Similarity=0.200  Sum_probs=153.0

Q ss_pred             CCcHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhHHHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHH
Q 008257           36 GRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIH  115 (572)
Q Consensus        36 g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~  115 (572)
                      +..+.++++|.+++..+|..|+.+|..+..         ...++.|+++|+++++.++..|+.+|..+..          
T Consensus        14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~---------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~----------   74 (201)
T 3ltj_A           14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD---------ERAVEPLIKALKDEDAWVRRAAADALGQIGD----------   74 (201)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------
T ss_pred             cchHHHHHHhcCCCHHHHHHHHHHHHhcCC---------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------
Confidence            457889999999999999999999986653         1234999999999999999999999998753          


Q ss_pred             cCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHH
Q 008257          116 AGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQV  195 (572)
Q Consensus       116 ~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~a  195 (572)
                      ..+++.|+++|.+.     ++.+|..|+++|+++..                   ...++.|+.+|.++++.++..++++
T Consensus        75 ~~~~~~L~~~l~d~-----~~~vr~~a~~aL~~~~~-------------------~~~~~~L~~~l~d~~~~vr~~a~~a  130 (201)
T 3ltj_A           75 ERAVEPLIKALKDE-----DGWVRQSAAVALGQIGD-------------------ERAVEPLIKALKDEDWFVRIAAAFA  130 (201)
T ss_dssp             GGGHHHHHHHTTCS-----SHHHHHHHHHHHHHHCC-------------------GGGHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCC-----CHHHHHHHHHHHHHhCc-------------------HHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            25789999999753     38899999999998832                   2468999999999999999999999


Q ss_pred             HHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCC
Q 008257          196 LVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVG  275 (572)
Q Consensus       196 L~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~  275 (572)
                      |..+..              ...++.|+.++.++++.+|..|+++|..+..   .          .+++.|..++.+++.
T Consensus       131 L~~~~~--------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~---~----------~~~~~L~~~l~d~~~  183 (201)
T 3ltj_A          131 LGEIGD--------------ERAVEPLIKALKDEDGWVRQSAADALGEIGG---E----------RVRAAMEKLAETGTG  183 (201)
T ss_dssp             HHHHTC--------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS---H----------HHHHHHHHHHHHCCH
T ss_pred             HHHhCC--------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---h----------hHHHHHHHHHhCCCH
Confidence            987742              3478899999999999999999999998842   1          246778888877774


Q ss_pred             ChHHHHHHHHHHhcCC
Q 008257          276 ISKEQAAAVGLLAELP  291 (572)
Q Consensus       276 ~~~~~~~A~~~L~~L~  291 (572)
                        .++..|..+|.++.
T Consensus       184 --~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          184 --FARKVAVNYLETHK  197 (201)
T ss_dssp             --HHHHHHHHHHHHCC
T ss_pred             --HHHHHHHHHHHHHH
Confidence              89999999998874

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.28  E-value=1e-10  Score=123.27  Aligned_cols=388  Identities=12%  Similarity=0.116  Sum_probs=242.8

Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhH-HHHHHhcccC--CHHHHHHHHHHHHHhhcCCCc-H-----
Q 008257           40 PLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVG-SCLINIMKSG--NMQAREAALKALNQISSCEPS-A-----  110 (572)
Q Consensus        40 ~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~Lv~lL~s~--~~~~~~~A~~aL~~Ls~~~~~-~-----  110 (572)
                      .++.-+.+++.++|..|...|..+...+       ..+. +.|+.+|.++  ++.+|..|+..|.++...... .     
T Consensus         5 ~~L~~~~s~d~~~r~~Ae~~L~~~~~~~-------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~   77 (462)
T 1ibr_B            5 TILEKTVSPDRLELEAAQKFLERAAVEN-------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQ   77 (462)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHhhC-------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHH
Confidence            3444455677888888888887643310       1245 7788888764  678999999999998754211 0     


Q ss_pred             ---HHH---HHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcC
Q 008257          111 ---KVL---IHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNT  184 (572)
Q Consensus       111 ---~~i---v~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~  184 (572)
                         ..+   .....-..|+..|.+.     +..+ ..++.+++.++......        +   .-.+.++.|+..+.++
T Consensus        78 ~~~~~l~~~~~~~ik~~ll~~l~~~-----~~~v-~~~~~~i~~ia~~~~~~--------~---~w~~ll~~L~~~l~~~  140 (462)
T 1ibr_B           78 QRWLAIDANARREVKNYVLQTLGTE-----TYRP-SSASQCVAGIACAEIPV--------N---QWPELIPQLVANVTNP  140 (462)
T ss_dssp             HHHHTSCHHHHHHHHHHHHHHTTCC-----CSSS-CSHHHHHHHHHHHHGGG--------T---CCTTHHHHHHHHHHCT
T ss_pred             hhhhcCCHHHHHHHHHHHHHHhCCC-----Cchh-hHHHHHHHHHHHHhccc--------c---ccHHHHHHHHHHhccC
Confidence               000   1122334466777653     2456 78999999998753100        0   1146899999999988


Q ss_pred             --ChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCC--CHHHHHHHHHHHHHcCCCCChhHH-HHHhcc
Q 008257          185 --GPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAP--QNDLRLASIELIQNLSPHMGHELA-DALRGA  259 (572)
Q Consensus       185 --~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~a~~~L~~Ls~~~~~~~~-~~i~~~  259 (572)
                        ++.++..++.+|..++..... +.....  -...++.++..+.+.  ++.+|..|++++.++......... ..+.. 
T Consensus       141 ~~~~~~r~~al~~l~~l~~~~~~-~~~~~~--~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~-  216 (462)
T 1ibr_B          141 NSTEHMKESTLEAIGYICQDIDP-EQLQDK--SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERH-  216 (462)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHSCG-GGTGGG--HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHH-
T ss_pred             CCCHHHHHHHHHHHHHHHHhCCc-hhhHhH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-
Confidence              899999999999998863211 000101  023677888899887  689999999999987643211110 01111 


Q ss_pred             cCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHH
Q 008257          260 VGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVL  339 (572)
Q Consensus       260 ~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL  339 (572)
                       -.++.|.+.+.+++.  +++..++.+|..+....+..-...+..+.++.++..+++          ....+...++..+
T Consensus       217 -~l~~~l~~~~~~~~~--~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~~~v~~~a~~~l  283 (462)
T 1ibr_B          217 -FIMQVVCEATQCPDT--RVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKS----------DIDEVALQGIEFW  283 (462)
T ss_dssp             -HHHHHHHHHTTCSSH--HHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHC----------SSHHHHHHHHHHH
T ss_pred             -HHHHHHHHhcCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----------CchHHHHHHHHHH
Confidence             135566666665553  888888888887754322211111222556666666654          2455677788877


Q ss_pred             HHHhccCCCChHH------------------HHHH--HHcCchHHHHHHhccC------CcHHHHHHHHHHHHHhhhhcc
Q 008257          340 ARVTFVLSDEPDA------------------IALC--CEHNLAALFIELLQSN------GLDKVQMVSATALENLSLESK  393 (572)
Q Consensus       340 ~~l~~~~~~~~~~------------------~~~i--~~~g~i~~Lv~lL~~~------~~~~vk~~Aa~aL~~ls~~~~  393 (572)
                      ..++..   ..+.                  ...+  .-..++|.+++.|...      .+..++..|+.+|..++..-+
T Consensus       284 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~  360 (462)
T 1ibr_B          284 SNVCDE---EMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE  360 (462)
T ss_dssp             HHHHHH---HHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHH---HHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc
Confidence            777631   0000                  0000  0133567777777542      134688889999988875322


Q ss_pred             ccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhc
Q 008257          394 NLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDD  473 (572)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~  473 (572)
                      .  .                                         ++ ...++.+.+.|.+++..++.+|+.+|+.++..
T Consensus       361 ~--~-----------------------------------------~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~  396 (462)
T 1ibr_B          361 D--D-----------------------------------------IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEG  396 (462)
T ss_dssp             T--T-----------------------------------------HH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSS
T ss_pred             H--H-----------------------------------------HH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC
Confidence            0  0                                         11 23667788889999999999999999999953


Q ss_pred             CccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcc
Q 008257          474 GVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRT  519 (572)
Q Consensus       474 ~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~  519 (572)
                      .. . +..... -...++.++..| .++++.+|..|+++|.+++..
T Consensus       397 ~~-~-~~~~~~-l~~~~~~l~~~l-~d~~~~Vr~~a~~~l~~~~~~  438 (462)
T 1ibr_B          397 PE-P-SQLKPL-VIQAMPTLIELM-KDPSVVVRDTAAWTVGRICEL  438 (462)
T ss_dssp             SC-T-TTTCTT-TTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHHHH
T ss_pred             Cc-H-HHHHHH-HHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHh
Confidence            21 0 000011 135678899999 588999999999999999854

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.27  E-value=9.5e-11  Score=109.15  Aligned_cols=176  Identities=16%  Similarity=0.208  Sum_probs=148.5

Q ss_pred             CCCCCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhHHHHH
Q 008257            3 SSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLI   82 (572)
Q Consensus         3 ~~~s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~~~Lv   82 (572)
                      +++++|+.++..|..+|..+..          .+.++.|+++|.++++.+|..++.+|+.+...         ..++.|+
T Consensus        22 ~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~---------~~~~~L~   82 (201)
T 3ltj_A           22 NLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGDE---------RAVEPLI   82 (201)
T ss_dssp             HTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG---------GGHHHHH
T ss_pred             HhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH---------HHHHHHH
Confidence            5788999999999999988764          35689999999999999999999999876431         2349999


Q ss_pred             HhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccC
Q 008257           83 NIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVG  162 (572)
Q Consensus        83 ~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~  162 (572)
                      ++|+++++.++..|+++|.++..          ..+++.|+++|.+.     ++.++..|+++|+++..           
T Consensus        83 ~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~-----~~~vr~~a~~aL~~~~~-----------  136 (201)
T 3ltj_A           83 KALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDE-----DWFVRIAAAFALGEIGD-----------  136 (201)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCS-----SHHHHHHHHHHHHHHTC-----------
T ss_pred             HHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCC-----CHHHHHHHHHHHHHhCC-----------
Confidence            99999999999999999999753          34789999999753     38899999999999842           


Q ss_pred             CCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHH
Q 008257          163 PDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQ  242 (572)
Q Consensus       163 ~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~  242 (572)
                              ...++.|+.++.++++.++..++++|..+..              ..+++.|..+++++++.+|..|..+|.
T Consensus       137 --------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--------------~~~~~~L~~~l~d~~~~vr~~A~~aL~  194 (201)
T 3ltj_A          137 --------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--------------ERVRAAMEKLAETGTGFARKVAVNYLE  194 (201)
T ss_dssp             --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--------------HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred             --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------------hhHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence                    3478999999999999999999999988731              236788999999999999999999998


Q ss_pred             HcC
Q 008257          243 NLS  245 (572)
Q Consensus       243 ~Ls  245 (572)
                      .+.
T Consensus       195 ~l~  197 (201)
T 3ltj_A          195 THK  197 (201)
T ss_dssp             HCC
T ss_pred             HHH
Confidence            875

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.25  E-value=1.4e-08  Score=111.00  Aligned_cols=458  Identities=9%  Similarity=0.070  Sum_probs=279.2

Q ss_pred             CCCCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhHHHHHH
Q 008257            4 SKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLIN   83 (572)
Q Consensus         4 ~~s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~~~Lv~   83 (572)
                      .+|+|....+.+--.+..++..+.....+    .+..+.+-|+++++-.+..|..+|+++...     .+.+.-.|.+.+
T Consensus        83 ~~s~~~~~Krl~YL~l~~~~~~~~e~~~L----~iN~l~kDl~~~n~~ir~lALr~L~~i~~~-----e~~~~l~~~v~~  153 (621)
T 2vgl_A           83 LSSNRYTEKQIGYLFISVLVNSNSELIRL----INNAIKNDLASRNPTFMGLALHCIANVGSR-----EMAEAFAGEIPK  153 (621)
T ss_dssp             GGCSCHHHHHHHHHHHHHSCCCCHHHHHH----HHHHHHHHHHSCCHHHHHHHHHHHHHHCCH-----HHHHHHTTHHHH
T ss_pred             hcCCCHHHHHHHHHHHHHHccCCcHHHHH----HHHHHHHhcCCCCHHHHHHHHHHhhccCCH-----HHHHHHHHHHHH
Confidence            46778877777777777777644332222    245677778899999999999999988542     233333399999


Q ss_pred             hc--ccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCcccc
Q 008257           84 IM--KSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITV  161 (572)
Q Consensus        84 lL--~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~  161 (572)
                      +|  .+.++.+|..|+-++.++....+.  .+-..+.++.|.++|...     ++.++..|..+|..++..+..      
T Consensus       154 ~l~~~d~~~~VRK~A~~al~kl~~~~p~--~~~~~~~~~~l~~lL~d~-----d~~V~~~a~~~l~~i~~~~~~------  220 (621)
T 2vgl_A          154 ILVAGDTMDSVKQSAALCLLRLYRTSPD--LVPMGDWTSRVVHLLNDQ-----HLGVVTAATSLITTLAQKNPE------  220 (621)
T ss_dssp             HHHCSSSCHHHHHHHHHHHHHHHHHCGG--GCCCCSCHHHHHHHTTCS-----CHHHHHHHHHHHHHHHHHCHH------
T ss_pred             HHhCCCCCHHHHHHHHHHHHHHHHhChh--hcCchhHHHHHHHHhCCC-----CccHHHHHHHHHHHHHHhChH------
Confidence            99  888999999999999999974332  222358899999999643     378999999999999875321      


Q ss_pred             CCCccccchhhhHHHHHHHHh----cC-------------ChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHH
Q 008257          162 GPDNQTLVSEDIVHNLLHLIS----NT-------------GPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQ  224 (572)
Q Consensus       162 ~~~~~~l~~~~~i~~Lv~lL~----~~-------------~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~  224 (572)
                             .-...+|.+++.|.    .+             ++-.|...++.|..++...+  .+.+..+.+  .+..++.
T Consensus       221 -------~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d--~~~~~~l~~--~L~~il~  289 (621)
T 2vgl_A          221 -------EFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPED--PAVRGRLTE--CLETILN  289 (621)
T ss_dssp             -------HHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSS--HHHHHHHHH--HHHHHHH
T ss_pred             -------HHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCC--HHHHHHHHH--HHHHHHH
Confidence                   00124555555443    21             57789999999999886432  233433322  3333333


Q ss_pred             Hh---------cCCCH--HHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCC
Q 008257          225 FV---------EAPQN--DLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPER  293 (572)
Q Consensus       225 lL---------~~~~~--~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~  293 (572)
                      .+         ++.+.  .+.-.|++++..+..  ..+    +..  .++..|.++|.++++  .++..|+..|..+...
T Consensus       290 ~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~--~~~----~~~--~~~~~L~~~L~~~~~--niry~aL~~l~~l~~~  359 (621)
T 2vgl_A          290 KAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS--EPN----LLV--RACNQLGQFLQHRET--NLRYLALESMCTLASS  359 (621)
T ss_dssp             HHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC--CHH----HHH--HHHHHHHHHSSCSCH--HHHHHHHHHHHHHTTC
T ss_pred             hhccCcccccccccchHHHHHHHHHHHHHhcCC--cHH----HHH--HHHHHHHHHhcCCCc--chHHHHHHHHHHHHhc
Confidence            22         11222  667777888888762  223    222  367889999987765  8999999999998875


Q ss_pred             cHHHHHHHHhCCChHHHHHHHh-hhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccC
Q 008257          294 DLGLTRQMLDEGAFGLIFSRVK-SIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSN  372 (572)
Q Consensus       294 ~~~~~~~l~~~g~l~~Lv~lL~-~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~  372 (572)
                      .+.. ..+.  ...+.++.+|+ +          .+..++..++..|..++     ++++.+.+     +..|.+.+...
T Consensus       360 ~~~~-~~~~--~~~~~i~~~L~~d----------~d~~Ir~~aL~lL~~l~-----~~~Nv~~I-----v~eL~~yl~~~  416 (621)
T 2vgl_A          360 EFSH-EAVK--THIETVINALKTE----------RDVSVRQRAVDLLYAMC-----DRSNAQQI-----VAEMLSYLETA  416 (621)
T ss_dssp             TTTH-HHHH--TTHHHHHHHHTTC----------CCHHHHHHHHHHHHHHC-----CHHHHHHH-----HHHHHHHHHHC
T ss_pred             cCcH-HHHH--HHHHHHHHHhccC----------CCHhHHHHHHHHHHHHc-----ChhhHHHH-----HHHHHHHHHhc
Confidence            4321 2222  35677778887 4          24567888999999988     56555443     45567777777


Q ss_pred             CcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCC-ccccccccCCCccccccccccCccCccchhhh------hhccch
Q 008257          373 GLDKVQMVSATALENLSLESKNLTKLPELPPSGFC-ASIFPCFSKQPVITGLCRLHRGLCSLKETFCL------LEGHAV  445 (572)
Q Consensus       373 ~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l------~~~g~i  445 (572)
                       +.+.+..+..+++.++..-+...        .++ ..++..+....+ +    +...++  ..-..+      .+..++
T Consensus       417 -d~~~~~~~v~~I~~la~k~~~~~--------~~~v~~Ll~ll~~~~~-~----v~~ev~--~~l~~ii~~~~~~~~~~~  480 (621)
T 2vgl_A          417 -DYSIREEIVLKVAILAEKYAVDY--------TWYVDTILNLIRIAGD-Y----VSEEVW--YRVIQIVINRDDVQGYAA  480 (621)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHCSST--------HHHHHHHHHHHHHHGG-G----SCSHHH--HHHHHHHGGGCSCHHHHH
T ss_pred             -CHHHHHHHHHHHHHHHHhcCCcH--------HHHHHHHHHHHHhhcc-c----chHHHH--HHHHHHHhCChhHHHHHH
Confidence             88999999999998875321100        000 001111110000 0    000000  000000      122345


Q ss_pred             HHHHHhhcCCC--HhHHHHHHHHHHHhhhcCccchhhHHHHHhcCC------hHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 008257          446 EKLIALLDHTN--EKVVEASLAALSTVIDDGVDIEQGVMVLCEAQG------IKPILDVLLEKRTENLQRRAVWVVERIL  517 (572)
Q Consensus       446 ~~Lv~lL~~~~--~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~------i~~L~~lL~~~~~~~~~~~a~~~l~~l~  517 (572)
                      ..|++.|..+.  ..+...++|.|+.....          +.+..+      +..+..-+ ...++.+|..++.++.+++
T Consensus       481 ~~l~~~l~~~~~~~~li~~~~wilGEy~~~----------~~~~~~~~p~~~l~~l~~~~-~~~~~~v~~~~Lta~~Kl~  549 (621)
T 2vgl_A          481 KTVFEALQAPACHENLVKVGGYILGEFGNL----------IAGDPRSSPLIQFNLLHSKF-HLCSVPTRALLLSTYIKFV  549 (621)
T ss_dssp             HHHHHHHTSSSCCHHHHHHHHHHHHHHTHH----------HHSSTTSCHHHHHHHHHHHH-TTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCccchHHHHHHHHHHhcchHHH----------hcccCCCCHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHHH
Confidence            56666666532  34555566666655421          112222      22333334 2567889999999999988


Q ss_pred             cc-hhhhhhhcCCCCchHHHHH-Hhh--cCCchhHHHHHHHHHhhccc
Q 008257          518 RT-DDIAYEVSGDPNVSTALVD-AFQ--HADYRTRQIAERALKHIDKI  561 (572)
Q Consensus       518 ~~-~~~~~~~~~~~~~~~~Lv~-ll~--~~~~~~~~~Aa~aL~~L~~~  561 (572)
                      .. ++....      +. .+++ ...  +.|+++|++|...+.-|...
T Consensus       550 ~~~p~~~~~------i~-~~l~~~~~~~~~d~evrdRA~~y~~Ll~~~  590 (621)
T 2vgl_A          550 NLFPEVKAT------IQ-DVLRSDSQLKNADVELQQRAVEYLRLSTVA  590 (621)
T ss_dssp             HHCGGGHHH------HH-HHHSSHHHHSCSSHHHHHHHHHHHHHHHSS
T ss_pred             HHChHHHHH------HH-HHHHHHhcCCCCCHHHHHHHHHHHHHHccC
Confidence            43 332211      11 2222 223  78899999999998888653

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.19  E-value=3e-09  Score=126.19  Aligned_cols=469  Identities=12%  Similarity=0.104  Sum_probs=278.7

Q ss_pred             CCCCHHHHHHHHHHHHhhccC-cch------HHHHHHcCCcHHHHHHHc-cCCHHHHHHHHHHHHHhccC--cchhHHHH
Q 008257            5 KSENLLTVEKAEKTLANLEKC-ENN------VRQMAENGRLQPLLTQIL-EGPQETKLSLAAFLGDLALN--SDVKVLVA   74 (572)
Q Consensus         5 ~s~~~~~~~~A~~~L~~L~~~-~~n------~~~i~~~g~i~~Lv~~L~-~~~~~~~~~aa~~L~~l~~~--~~~k~~i~   74 (572)
                      .++++.++..|..+|..++.. ...      .... -...++.|+..+. +++..++..|..+|..+...  ...... .
T Consensus        96 ~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~-~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~-~  173 (1230)
T 1u6g_C           96 LSDKEQLRDISSIGLKTVIGELPPASSGSALAANV-CKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNF-H  173 (1230)
T ss_dssp             TCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHH-HHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTT-H
T ss_pred             cCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHH-HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHH-H
Confidence            455666677777777776641 111      1111 1235788888888 47788999999999887641  111111 1


Q ss_pred             hhhH-HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcC
Q 008257           75 RTVG-SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSG  153 (572)
Q Consensus        75 ~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~  153 (572)
                       ..+ +.|+..|.++++.+|..|+.+|..++...+..  + -...+|.|++.|....    +...+..++.++..++...
T Consensus       174 -~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~--~-~~~~l~~l~~~L~~~~----~~~~r~~a~~~l~~l~~~~  245 (1230)
T 1u6g_C          174 -PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI--V-FVDLIEHLLSELSKND----SMSTTRTYIQCIAAISRQA  245 (1230)
T ss_dssp             -HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTC----SSCSCTTHHHHHHHHHHHS
T ss_pred             -HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH--H-HHHHHHHHHHHhccCC----chhHHHHHHHHHHHHHHHh
Confidence             234 88899999999999999999999999754322  1 1245889999887642    1456778899999998753


Q ss_pred             CCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcC-----
Q 008257          154 HDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEA-----  228 (572)
Q Consensus       154 ~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~-----  228 (572)
                      ..  .+  ..     .-...++.++..+...+++++..++.++..++.....  .++..+  ...++.++..+..     
T Consensus       246 ~~--~~--~~-----~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~l--~~li~~ll~~l~~d~~~~  312 (1230)
T 1u6g_C          246 GH--RI--GE-----YLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPK--EVYPHV--STIINICLKYLTYDPNYN  312 (1230)
T ss_dssp             SG--GG--TT-----SCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTC--CCHHHH--HHHHHHHTTCCCCC----
T ss_pred             HH--HH--HH-----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChH--HHHHhH--HHHHHHHHHHhCCCCCCC
Confidence            21  00  00     1246899999999988999999998888877654221  111111  1123333333211     


Q ss_pred             --------------------------------CCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCC
Q 008257          229 --------------------------------PQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGI  276 (572)
Q Consensus       229 --------------------------------~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~  276 (572)
                                                      ...++|..|+.+|..++...+.... .+..  ..++.|+..+...+. 
T Consensus       313 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~-~~~~--~l~~~l~~~l~d~~~-  388 (1230)
T 1u6g_C          313 YDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLP-EFYK--TVSPALISRFKEREE-  388 (1230)
T ss_dssp             --------------------------------CTTHHHHHHHHHHHHHHTTCCTTHH-HHHT--TTHHHHHSTTSCSSS-
T ss_pred             CcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHH-HHHH--HHHHHHHHHcCCCch-
Confidence                                            1125688899999888765443232 2333  478888888876664 


Q ss_pred             hHHHHHHHHHHhcCCCC-------------------cHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHH
Q 008257          277 SKEQAAAVGLLAELPER-------------------DLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLS  337 (572)
Q Consensus       277 ~~~~~~A~~~L~~L~~~-------------------~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~  337 (572)
                       .++..++.++..+...                   .....+.+. ...++.+...+++          ....+++.++.
T Consensus       389 -~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ll~~l~~~l~~----------~~~~vr~~~~~  456 (1230)
T 1u6g_C          389 -NVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV-PNIVKALHKQMKE----------KSVKTRQCCFN  456 (1230)
T ss_dssp             -HHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHT-THHHHHHHHHTTC----------SCHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHh-hHHHHHHHHHhcc----------CCHHHHHHHHH
Confidence             8888888776554320                   000101111 1233444444543          13345667777


Q ss_pred             HHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCc--HHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCcccccccc
Q 008257          338 VLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGL--DKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFS  415 (572)
Q Consensus       338 aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~--~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (572)
                      +|..+....   ++.... .-..++|.+.+.|.+. .  ..++..++.++..+......                     
T Consensus       457 ~L~~l~~~~---~~~l~~-~l~~ll~~l~~~L~d~-~~~~~v~~~a~~~l~~~~~~~~~---------------------  510 (1230)
T 1u6g_C          457 MLTELVNVL---PGALTQ-HIPVLVPGIIFSLNDK-SSSSNLKIDALSCLYVILCNHSP---------------------  510 (1230)
T ss_dssp             HHHHHHHHS---TTTTGG-GHHHHHHHHHHHTTCS-SSCHHHHHHHHHHHHHHHHSSCG---------------------
T ss_pred             HHHHHHHHc---hhhhHH-HHHHHHHHHHHHHcCC-CCcchHHHHHHHHHHHHHHhCCH---------------------
Confidence            777776431   110000 0124578899999986 4  48888888888877542110                     


Q ss_pred             CCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhc-Cc-------cchhhHHHHHhc
Q 008257          416 KQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDD-GV-------DIEQGVMVLCEA  487 (572)
Q Consensus       416 ~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~-~~-------~~~~~~~~i~~~  487 (572)
                                         ..|.-.-...+|.|+..+.+.+..+...|+.++..++.. ++       ........    
T Consensus       511 -------------------~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~----  567 (1230)
T 1u6g_C          511 -------------------QVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKD----  567 (1230)
T ss_dssp             -------------------GGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHH----
T ss_pred             -------------------HHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHH----
Confidence                               001001134788999999998899988888888888732 11       11111122    


Q ss_pred             CChHHHHHHHh-hcCCHHHHHHHHHHHHHHHcc--hhhhh-----------hhcCC------------------------
Q 008257          488 QGIKPILDVLL-EKRTENLQRRAVWVVERILRT--DDIAY-----------EVSGD------------------------  529 (572)
Q Consensus       488 g~i~~L~~lL~-~~~~~~~~~~a~~~l~~l~~~--~~~~~-----------~~~~~------------------------  529 (572)
                       -++.+++.+. .+.+..+|..|+.++..++..  +....           .+...                        
T Consensus       568 -ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e~~r~~~~~al~~i~~~~~~~~~~~  646 (1230)
T 1u6g_C          568 -LFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRP  646 (1230)
T ss_dssp             -HHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSCCCCHH
T ss_pred             -HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHhCccccchHH
Confidence             2355667672 145778999999999888744  11110           00000                        


Q ss_pred             --CCchHHHHHHhhcCCchhHHHHHHHHHhhcccC
Q 008257          530 --PNVSTALVDAFQHADYRTRQIAERALKHIDKIP  562 (572)
Q Consensus       530 --~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~  562 (572)
                        ..+...|...+++.+..+|..|+.+|..+.+..
T Consensus       647 ~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~  681 (1230)
T 1u6g_C          647 VLGEGVPILASFLRKNQRALKLGTLSALDILIKNY  681 (1230)
T ss_dssp             HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcc
Confidence              011124455556677788889999998887643

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.00  E-value=8.1e-10  Score=122.39  Aligned_cols=203  Identities=11%  Similarity=0.093  Sum_probs=154.9

Q ss_pred             hhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHH-HHhcCCCHHHHHHHHHHHHHcCCCCCh
Q 008257          172 DIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLV-QFVEAPQNDLRLASIELIQNLSPHMGH  250 (572)
Q Consensus       172 ~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv-~lL~~~~~~v~~~a~~~L~~Ls~~~~~  250 (572)
                      ..|.++++.|++++++.|..|+++|.+++.++    ..++.+...|+|.+++ .+|.+++.++|+.|+++|+||+.+.+.
T Consensus        34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~----~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~  109 (684)
T 4gmo_A           34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQDA----KCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEA  109 (684)
T ss_dssp             HTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSH----HHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCH
T ss_pred             hhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCc----HHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCc
Confidence            34677889999999999999999999999864    4677888899998765 567888899999999999999987777


Q ss_pred             hHHHHHhcccCChhhHHhhhccCCC-----------Ch--------HHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHH
Q 008257          251 ELADALRGAVGQLGSLIRVISENVG-----------IS--------KEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIF  311 (572)
Q Consensus       251 ~~~~~i~~~~g~l~~Lv~lL~~~~~-----------~~--------~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv  311 (572)
                      ++...+... |++++|..+|.+...           ..        ++...++.+|.+|+..+.+..+.+.+.|+++.|+
T Consensus       110 d~~~~l~~~-~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~  188 (684)
T 4gmo_A          110 DFCVHLYRL-DVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLL  188 (684)
T ss_dssp             HHHHHHHHT-THHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHH
T ss_pred             hHHHHHHHc-ChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHH
Confidence            877777777 899999998864210           00        1223466778888776777778889999999999


Q ss_pred             HHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhc--cCCcHHHHHHHHHHHHHhh
Q 008257          312 SRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQ--SNGLDKVQMVSATALENLS  389 (572)
Q Consensus       312 ~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~~vk~~Aa~aL~~ls  389 (572)
                      .+|.+..       .....+...++..|..++.   +|++..+.+.+.+....+..++.  .. ++..+..+++.|.|+.
T Consensus       189 ~~L~~~~-------~~~~~v~~~a~~~L~~ls~---dn~~~~~~i~~~~~~~~~~~ll~~~~~-~~~~~~la~giL~Ni~  257 (684)
T 4gmo_A          189 FRLISAD-------IAPQDIYEEAISCLTTLSE---DNLKVGQAITDDQETHVYDVLLKLATG-TDPRAVMACGVLHNVF  257 (684)
T ss_dssp             HHHHHHC-------CSCHHHHHHHHHHHHHHHT---TCHHHHHHHHTCCSSCHHHHHHHHHHS-SCTTHHHHHHHHHHHH
T ss_pred             HHHHhcC-------CCcHHHHHHHHHHHHHHhc---cCHHHHHHHHhcchHHHHHHHHHHhcC-CcHHHHHHHHHHHhHh
Confidence            9997532       1235678889999999996   47888888888776544333332  23 4456778899999875


Q ss_pred             h
Q 008257          390 L  390 (572)
Q Consensus       390 ~  390 (572)
                      .
T Consensus       258 ~  258 (684)
T 4gmo_A          258 T  258 (684)
T ss_dssp             H
T ss_pred             h
Confidence            3

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=98.97  E-value=8.1e-08  Score=105.00  Aligned_cols=337  Identities=13%  Similarity=0.182  Sum_probs=218.1

Q ss_pred             HHHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCC
Q 008257           78 GSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFD  157 (572)
Q Consensus        78 ~~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~  157 (572)
                      .+..++++.+.+...++.+.-++..++..++.--.+    ++..+.+=|.++     ++-++..|..+|+++...     
T Consensus        76 ~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L----~iN~l~kDl~~~-----n~~ir~lALr~L~~i~~~-----  141 (621)
T 2vgl_A           76 HMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRL----INNAIKNDLASR-----NPTFMGLALHCIANVGSR-----  141 (621)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHH----HHHHHHHHHHSC-----CHHHHHHHHHHHHHHCCH-----
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHH----HHHHHHHhcCCC-----CHHHHHHHHHHhhccCCH-----
Confidence            388999999999999999999999988654322222    355666666653     378899999999998431     


Q ss_pred             ccccCCCccccchhhhHHHHHHHH--hcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHH
Q 008257          158 SITVGPDNQTLVSEDIVHNLLHLI--SNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRL  235 (572)
Q Consensus       158 ~~~~~~~~~~l~~~~~i~~Lv~lL--~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~  235 (572)
                               . ..+..++.+.++|  .+.++.++..|+-++..+......      .+...+.++.|.++|.++++.++.
T Consensus       142 ---------e-~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~------~~~~~~~~~~l~~lL~d~d~~V~~  205 (621)
T 2vgl_A          142 ---------E-MAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPD------LVPMGDWTSRVVHLLNDQHLGVVT  205 (621)
T ss_dssp             ---------H-HHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGG------GCCCCSCHHHHHHHTTCSCHHHHH
T ss_pred             ---------H-HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChh------hcCchhHHHHHHHHhCCCCccHHH
Confidence                     1 2246788889999  789999999999999988764321      111247899999999999999999


Q ss_pred             HHHHHHHHcCCCCChhHHHHHhcccCChhhHH----hhhccC-C----------CChHHHHHHHHHHhcCCCC-cHHHHH
Q 008257          236 ASIELIQNLSPHMGHELADALRGAVGQLGSLI----RVISEN-V----------GISKEQAAAVGLLAELPER-DLGLTR  299 (572)
Q Consensus       236 ~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv----~lL~~~-~----------~~~~~~~~A~~~L~~L~~~-~~~~~~  299 (572)
                      +|+.+|..++.+.+..    +.   ..++.++    +++..+ .          ..+-.|...+.+|..++.. +++..+
T Consensus       206 ~a~~~l~~i~~~~~~~----~~---~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~  278 (621)
T 2vgl_A          206 AATSLITTLAQKNPEE----FK---TSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRG  278 (621)
T ss_dssp             HHHHHHHHHHHHCHHH----HT---THHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHH
T ss_pred             HHHHHHHHHHHhChHH----HH---HHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHH
Confidence            9999999988653321    11   2334444    443322 0          0135788888999998763 455555


Q ss_pred             HHHhCCChHHHHHHHhhhccC-CCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHH
Q 008257          300 QMLDEGAFGLIFSRVKSIQLG-ETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQ  378 (572)
Q Consensus       300 ~l~~~g~l~~Lv~lL~~~~~~-~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk  378 (572)
                      .+.+  .++.+++.+.+.... ..+.......+.-.++.++..+.    .+++..+.     ++..|..+|.++ ++++|
T Consensus       279 ~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~----~~~~~~~~-----~~~~L~~~L~~~-~~nir  346 (621)
T 2vgl_A          279 RLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD----SEPNLLVR-----ACNQLGQFLQHR-ETNLR  346 (621)
T ss_dssp             HHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC----CCHHHHHH-----HHHHHHHHSSCS-CHHHH
T ss_pred             HHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcC----CcHHHHHH-----HHHHHHHHhcCC-CcchH
Confidence            4443  334444332210000 00000012255666778887776    35655443     457788999887 89999


Q ss_pred             HHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhc-CCCH
Q 008257          379 MVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLD-HTNE  457 (572)
Q Consensus       379 ~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~-~~~~  457 (572)
                      ..|..+|..++...+..                                        .  .+ ......++.+|+ +++.
T Consensus       347 y~aL~~l~~l~~~~~~~----------------------------------------~--~~-~~~~~~i~~~L~~d~d~  383 (621)
T 2vgl_A          347 YLALESMCTLASSEFSH----------------------------------------E--AV-KTHIETVINALKTERDV  383 (621)
T ss_dssp             HHHHHHHHHHTTCTTTH----------------------------------------H--HH-HTTHHHHHHHHTTCCCH
T ss_pred             HHHHHHHHHHHhccCcH----------------------------------------H--HH-HHHHHHHHHHhccCCCH
Confidence            99999998886432100                                        0  11 123456677777 7888


Q ss_pred             hHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 008257          458 KVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERIL  517 (572)
Q Consensus       458 ~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~  517 (572)
                      .++..|+..|..++..     .+...|+     ..|.+.+ ...+.+.+..++..+..++
T Consensus       384 ~Ir~~aL~lL~~l~~~-----~Nv~~Iv-----~eL~~yl-~~~d~~~~~~~v~~I~~la  432 (621)
T 2vgl_A          384 SVRQRAVDLLYAMCDR-----SNAQQIV-----AEMLSYL-ETADYSIREEIVLKVAILA  432 (621)
T ss_dssp             HHHHHHHHHHHHHCCH-----HHHHHHH-----HHHHHHH-HHCCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCh-----hhHHHHH-----HHHHHHH-HhcCHHHHHHHHHHHHHHH
Confidence            8888888888888743     2233333     3455666 3667777777776666554

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.97  E-value=2.7e-09  Score=118.19  Aligned_cols=216  Identities=14%  Similarity=0.196  Sum_probs=149.0

Q ss_pred             HcCCcHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhH-HHH-HHhcccCCHHHHHHHHHHHHHhhcCC--Cc
Q 008257           34 ENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVG-SCL-INIMKSGNMQAREAALKALNQISSCE--PS  109 (572)
Q Consensus        34 ~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~L-v~lL~s~~~~~~~~A~~aL~~Ls~~~--~~  109 (572)
                      ....|.|+++.|++++.+.|..|+.+|.+++.+...++.+...++ +++ ..+|...+.++++.|+++|+||+.+.  +.
T Consensus        32 ~~~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~  111 (684)
T 4gmo_A           32 REDKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADF  111 (684)
T ss_dssp             HHHTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             chhhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchH
Confidence            344677999999999999999999999999998888887776655 554 56788899999999999999999754  45


Q ss_pred             HHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHH
Q 008257          110 AKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIE  189 (572)
Q Consensus       110 ~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q  189 (572)
                      +..+++.|++++|..+|.+..     .        .+...   ......  ..     -.....+           .++.
T Consensus       112 ~~~l~~~~il~~L~~~l~~~~-----~--------~~~~~---~~~~~~--~~-----~~~~~~~-----------~~~~  157 (684)
T 4gmo_A          112 CVHLYRLDVLTAIEHAAKAVL-----E--------TLTTS---EPPFSK--LL-----KAQQRLV-----------WDIT  157 (684)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHH-----H--------HHHCB---TTBGGG--SC-----HHHHHHH-----------HHHH
T ss_pred             HHHHHHcChHHHHHHHHHhhH-----H--------HHhhh---cccccc--cc-----HHHHHHH-----------HHHH
Confidence            788999999999999997531     1        11111   100000  00     0000011           2344


Q ss_pred             HHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCC---HHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhH
Q 008257          190 CKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQ---NDLRLASIELIQNLSPHMGHELADALRGAVGQLGSL  266 (572)
Q Consensus       190 ~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~---~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~L  266 (572)
                      .+++.+|++||..+.   +....+...++++.|+.+|.+.+   .+++..|+.+|..++.++ .+..+.+... |....+
T Consensus       158 ~~~l~lL~~L~e~s~---~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn-~~~~~~i~~~-~~~~~~  232 (684)
T 4gmo_A          158 GSLLVLIGLLALARD---EIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDN-LKVGQAITDD-QETHVY  232 (684)
T ss_dssp             HHHHHHHHHHHHHCH---HHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHTC-CSSCHH
T ss_pred             HHHHHHHHHHHhCCH---HHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccC-HHHHHHHHhc-chHHHH
Confidence            567777888886553   56677888999999999985432   579999999999999874 4555667665 433222


Q ss_pred             Hhhh--ccCCCChHHHHHHHHHHhcC
Q 008257          267 IRVI--SENVGISKEQAAAVGLLAEL  290 (572)
Q Consensus       267 v~lL--~~~~~~~~~~~~A~~~L~~L  290 (572)
                      .-++  .+.++  ..+..++++|.|+
T Consensus       233 ~~ll~~~~~~~--~~~~la~giL~Ni  256 (684)
T 4gmo_A          233 DVLLKLATGTD--PRAVMACGVLHNV  256 (684)
T ss_dssp             HHHHHHHHSSC--TTHHHHHHHHHHH
T ss_pred             HHHHHHhcCCc--HHHHHHHHHHHhH
Confidence            2222  23332  4566778888875

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.39  E-value=6.8e-05  Score=83.51  Aligned_cols=275  Identities=11%  Similarity=-0.016  Sum_probs=182.6

Q ss_pred             HHHHHHhcc---cCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCC---CcchHHHHHHHHHHHHh
Q 008257           78 GSCLINIMK---SGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHL---PMRLKEVSATILANVVN  151 (572)
Q Consensus        78 ~~~Lv~lL~---s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~---~~~~~~~aa~~L~nla~  151 (572)
                      ...|-+.|.   ++++.++..|+.+|.-+.....+  .     ++..|...|.+.+....   ...++.-|+-.|+.+..
T Consensus       394 l~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~--~-----~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~  466 (963)
T 4ady_A          394 KKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR--D-----TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAM  466 (963)
T ss_dssp             HHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH--H-----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH--H-----HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhc
Confidence            377777887   67889999999999998875543  1     47788888875410000   14577778888887644


Q ss_pred             cCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHh-cCCC
Q 008257          152 SGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFV-EAPQ  230 (572)
Q Consensus       152 ~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL-~~~~  230 (572)
                      ++               ..+.+++.|..+|...+..+...++.+|..+-..+.+ .+         ++..|+..+ +..+
T Consensus       467 GS---------------~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn-~~---------ai~~LL~~~~e~~~  521 (963)
T 4ady_A          467 GS---------------ANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGK-PE---------AIHDMFTYSQETQH  521 (963)
T ss_dssp             TC---------------CCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC-HH---------HHHHHHHHHHHCSC
T ss_pred             CC---------------CCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC-HH---------HHHHHHHHHhccCc
Confidence            32               1256789999999887776666777777655333222 12         234455544 3446


Q ss_pred             HHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHh--cCCCCcHHHHHHHHhCCChH
Q 008257          231 NDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLA--ELPERDLGLTRQMLDEGAFG  308 (572)
Q Consensus       231 ~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~--~L~~~~~~~~~~l~~~g~l~  308 (572)
                      .++++.++..|..+..+..           ..++.+++.|....+ +.+|..|+.+++  ..-.++...         |+
T Consensus       522 e~vrR~aalgLGll~~g~~-----------e~~~~li~~L~~~~d-p~vRygaa~alglAyaGTGn~~a---------Iq  580 (963)
T 4ady_A          522 GNITRGLAVGLALINYGRQ-----------ELADDLITKMLASDE-SLLRYGGAFTIALAYAGTGNNSA---------VK  580 (963)
T ss_dssp             HHHHHHHHHHHHHHTTTCG-----------GGGHHHHHHHHHCSC-HHHHHHHHHHHHHHTTTSCCHHH---------HH
T ss_pred             HHHHHHHHHHHHhhhCCCh-----------HHHHHHHHHHHhCCC-HHHHHHHHHHHHHHhcCCCCHHH---------HH
Confidence            7899999999988865532           245677777775544 367777766654  333333322         34


Q ss_pred             HHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHh
Q 008257          309 LIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENL  388 (572)
Q Consensus       309 ~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~l  388 (572)
                      .|+..+.+.         .+..++..|+-+|..+..+   ++         ..+|.++++|...+++.+|..|+.||+.+
T Consensus       581 ~LL~~~~~d---------~~d~VRraAViaLGlI~~g---~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli  639 (963)
T 4ady_A          581 RLLHVAVSD---------SNDDVRRAAVIALGFVLLR---DY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIA  639 (963)
T ss_dssp             HHHHHHHHC---------SCHHHHHHHHHHHHHHTSS---SC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHhccC---------CcHHHHHHHHHHHHhhccC---CH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence            455555432         1345678888888877643   44         24577777665444999999999999988


Q ss_pred             hhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHH
Q 008257          389 SLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALS  468 (572)
Q Consensus       389 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~  468 (572)
                      +...+                                               ...+|..|..+++++++.|+..|+.+|+
T Consensus       640 ~aGn~-----------------------------------------------~~~aid~L~~L~~D~d~~Vrq~Ai~ALG  672 (963)
T 4ady_A          640 CAGKG-----------------------------------------------LQSAIDVLDPLTKDPVDFVRQAAMIALS  672 (963)
T ss_dssp             TSSSC-----------------------------------------------CHHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred             ccCCC-----------------------------------------------cHHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence            64322                                               1237788999999999999999999999


Q ss_pred             Hhhhc
Q 008257          469 TVIDD  473 (572)
Q Consensus       469 ~l~~~  473 (572)
                      .+...
T Consensus       673 ~Ig~g  677 (963)
T 4ady_A          673 MILIQ  677 (963)
T ss_dssp             HHSTT
T ss_pred             HHhcC
Confidence            98753

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.31  E-value=1.6e-07  Score=80.79  Aligned_cols=121  Identities=13%  Similarity=0.092  Sum_probs=91.2

Q ss_pred             cCCcHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhHHHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHH
Q 008257           35 NGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLI  114 (572)
Q Consensus        35 ~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv  114 (572)
                      ...++.|+..|++.+..+|..|+++|..+...          .++.|+++|+++++.+|..|+++|.++..         
T Consensus        11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~----------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~---------   71 (131)
T 1te4_A           11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE----------AFEPLLESLSNEDWRIRGAAAWIIGNFQD---------   71 (131)
T ss_dssp             ----------CCSSCCCSSSSCCSSTTSCSST----------THHHHHHGGGCSCHHHHHHHHHHHGGGCS---------
T ss_pred             cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch----------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC---------
Confidence            45678888999998888888888888755321          24899999999999999999999998763         


Q ss_pred             HcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHH
Q 008257          115 HAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQ  194 (572)
Q Consensus       115 ~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~  194 (572)
                       ..++++|+++|.+.     ++.+|..|+++|+++..                   ...++.|+.+++++++.++..+++
T Consensus        72 -~~a~~~L~~~L~d~-----~~~VR~~A~~aL~~~~~-------------------~~a~~~L~~~l~d~~~~vr~~A~~  126 (131)
T 1te4_A           72 -ERAVEPLIKLLEDD-----SGFVRSGAARSLEQIGG-------------------ERVRAAMEKLAETGTGFARKVAVN  126 (131)
T ss_dssp             -HHHHHHHHHHHHHC-----CTHHHHHHHHHHHHHCS-------------------HHHHHHHHHHTTSCCTHHHHHHHH
T ss_pred             -HHHHHHHHHHHcCC-----CHHHHHHHHHHHHHhCc-------------------HHHHHHHHHHHhCCCHHHHHHHHH
Confidence             23589999999754     37899999999998832                   357999999999999999999998


Q ss_pred             HHHHc
Q 008257          195 VLVGL  199 (572)
Q Consensus       195 aL~~l  199 (572)
                      +|..+
T Consensus       127 aL~~i  131 (131)
T 1te4_A          127 YLETH  131 (131)
T ss_dssp             HGGGC
T ss_pred             HHHhC
Confidence            87643

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.27  E-value=0.00026  Score=78.88  Aligned_cols=274  Identities=12%  Similarity=-0.024  Sum_probs=169.1

Q ss_pred             ChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCC--------hhHH
Q 008257          118 ILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTG--------PTIE  189 (572)
Q Consensus       118 ~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~--------~~~q  189 (572)
                      ++..|-..|....  +.++.++.-|+-.|+.+..+..                ..++..|...|.+.+        +.++
T Consensus       393 gl~~L~~yL~~~~--s~~~~ik~GAllaLGli~ag~~----------------~~~~~lL~~~L~~~~~~~~~~~~~~ir  454 (963)
T 4ady_A          393 GKKVMAPYLPGSR--ASSRFIKGGSLYGLGLIYAGFG----------------RDTTDYLKNIIVENSGTSGDEDVDVLL  454 (963)
T ss_dssp             HHHHHTTTSTTSC--CSCHHHHHHHHHHHHHHTTTTT----------------HHHHHHHHHHHHHHSSCCSCHHHHHHH
T ss_pred             HHHHHHHhccccC--CCcHHHHHHHHHHHHHhcCCCc----------------HHHHHHHHHHHcCccccccccccHHHH
Confidence            4555555554210  1235678888888887754321                235777888887655        5677


Q ss_pred             HHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHhcccCChhhHHh
Q 008257          190 CKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHM-GHELADALRGAVGQLGSLIR  268 (572)
Q Consensus       190 ~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~-~~~~~~~i~~~~g~l~~Lv~  268 (572)
                      ..|+..|.-....+.+          ...+..|...+..++..+++.|+.+|..+--+. +.++          +..|+.
T Consensus       455 ~gAaLGLGla~~GS~~----------eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~a----------i~~LL~  514 (963)
T 4ady_A          455 HGASLGIGLAAMGSAN----------IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEA----------IHDMFT  514 (963)
T ss_dssp             HHHHHHHHHHSTTCCC----------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHH----------HHHHHH
T ss_pred             HHHHHHHHHHhcCCCC----------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHH----------HHHHHH
Confidence            7777777765544432          124667788888777777778888877653222 2232          334444


Q ss_pred             hhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCC
Q 008257          269 VISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSD  348 (572)
Q Consensus       269 lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~  348 (572)
                      .+.+... ..++..++..|+.+..+++         ..++.++..|...         .++-++..++-++.....+. .
T Consensus       515 ~~~e~~~-e~vrR~aalgLGll~~g~~---------e~~~~li~~L~~~---------~dp~vRygaa~alglAyaGT-G  574 (963)
T 4ady_A          515 YSQETQH-GNITRGLAVGLALINYGRQ---------ELADDLITKMLAS---------DESLLRYGGAFTIALAYAGT-G  574 (963)
T ss_dssp             HHHHCSC-HHHHHHHHHHHHHHTTTCG---------GGGHHHHHHHHHC---------SCHHHHHHHHHHHHHHTTTS-C
T ss_pred             HHhccCc-HHHHHHHHHHHHhhhCCCh---------HHHHHHHHHHHhC---------CCHHHHHHHHHHHHHHhcCC-C
Confidence            4433332 3777777777777655443         3457777788752         23445556655554222211 3


Q ss_pred             ChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCcccccccccc
Q 008257          349 EPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHR  428 (572)
Q Consensus       349 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~  428 (572)
                      |+..         |..|++.+.+..++.+|+.|+.+|+.+....                                    
T Consensus       575 n~~a---------Iq~LL~~~~~d~~d~VRraAViaLGlI~~g~------------------------------------  609 (963)
T 4ady_A          575 NNSA---------VKRLLHVAVSDSNDDVRRAAVIALGFVLLRD------------------------------------  609 (963)
T ss_dssp             CHHH---------HHHHHHHHHHCSCHHHHHHHHHHHHHHTSSS------------------------------------
T ss_pred             CHHH---------HHHHHHHhccCCcHHHHHHHHHHHHhhccCC------------------------------------
Confidence            5543         3333444443337889999999998764321                                    


Q ss_pred             CccCccchhhhhhccchHHHHHhh-cCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHH
Q 008257          429 GLCSLKETFCLLEGHAVEKLIALL-DHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQR  507 (572)
Q Consensus       429 ~~~~~~~~~~l~~~g~i~~Lv~lL-~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~  507 (572)
                                   ...++.++++| ++.++.|+..|..||+.+.....     ...     ++..|..++ ...++.++.
T Consensus       610 -------------~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~-----~~~-----aid~L~~L~-~D~d~~Vrq  665 (963)
T 4ady_A          610 -------------YTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKG-----LQS-----AIDVLDPLT-KDPVDFVRQ  665 (963)
T ss_dssp             -------------CSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSC-----CHH-----HHHHHHHHH-TCSSHHHHH
T ss_pred             -------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCC-----cHH-----HHHHHHHHc-cCCCHHHHH
Confidence                         12567777754 67899999999999999875322     111     345666777 588999999


Q ss_pred             HHHHHHHHHHc
Q 008257          508 RAVWVVERILR  518 (572)
Q Consensus       508 ~a~~~l~~l~~  518 (572)
                      .|+.+|..+..
T Consensus       666 ~Ai~ALG~Ig~  676 (963)
T 4ady_A          666 AAMIALSMILI  676 (963)
T ss_dssp             HHHHHHHHHST
T ss_pred             HHHHHHHHHhc
Confidence            99999998873

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.27  E-value=0.0006  Score=69.93  Aligned_cols=350  Identities=13%  Similarity=0.126  Sum_probs=196.9

Q ss_pred             hHHHHHHhccc-CCHHHHHHHHHHHHHhhcCCC---cHHHHH-HcCChHH-HHHHHhccCCCCCCcchHHHHHHHHHHHH
Q 008257           77 VGSCLINIMKS-GNMQAREAALKALNQISSCEP---SAKVLI-HAGILPP-LVKDLFTVGSNHLPMRLKEVSATILANVV  150 (572)
Q Consensus        77 g~~~Lv~lL~s-~~~~~~~~A~~aL~~Ls~~~~---~~~~iv-~~G~i~~-Lv~lL~s~~~~~~~~~~~~~aa~~L~nla  150 (572)
                      ++..++++|+. .+.+.....+..+..|..+++   .+..+. +..-.+. +.......    .+.-....+..++..++
T Consensus        78 ~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~----dd~~~ll~a~~l~~ll~  153 (480)
T 1ho8_A           78 TLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKG----DFQTVLISGFNVVSLLV  153 (480)
T ss_dssp             THHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCS----SHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcc----cchHHHHHHHHHHHHHh
Confidence            34889999985 677888999999999888766   333332 3322221 22222111    12333344444445554


Q ss_pred             hcCCCCCccccCCCccccchhhhHHH------HHHHHhc-CChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCC--hHH
Q 008257          151 NSGHDFDSITVGPDNQTLVSEDIVHN------LLHLISN-TGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGA--TIS  221 (572)
Q Consensus       151 ~~~~~~~~~~~~~~~~~l~~~~~i~~------Lv~lL~~-~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~--i~~  221 (572)
                      ....              .....++.      ++..|.. ++.+.+.-++++|..|...+    +.|..+.+.++  +++
T Consensus       154 ~~~~--------------~~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~----~~R~~f~~~~~~~~~~  215 (480)
T 1ho8_A          154 QNGL--------------HNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIP----EYRDVIWLHEKKFMPT  215 (480)
T ss_dssp             STTT--------------CCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSH----HHHHHHHTTHHHHHHH
T ss_pred             ccCC--------------ccHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcch----hHHHHHHHcccchhHH
Confidence            3211              11233333      4444554 34566777888888888764    56877776654  666


Q ss_pred             HHHHhcC---------------C--CHHHHHHHHHHHHHcCCCCChhHHHHHhcccCCh--hhHHhhhccCCCChHHHHH
Q 008257          222 LVQFVEA---------------P--QNDLRLASIELIQNLSPHMGHELADALRGAVGQL--GSLIRVISENVGISKEQAA  282 (572)
Q Consensus       222 Lv~lL~~---------------~--~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l--~~Lv~lL~~~~~~~~~~~~  282 (572)
                      ++.+++.               +  ...++=+++-+++.|+-.  .++.+.+... +..  +.|+++++.... +++-..
T Consensus       216 l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~--~~~~~~l~~~-~i~~~~~L~~i~k~s~K-EKvvRv  291 (480)
T 1ho8_A          216 LFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFN--PVFANELVQK-YLSDFLDLLKLVKITIK-EKVSRL  291 (480)
T ss_dssp             HHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTS--HHHHHHHHTT-SHHHHHHHHHHHHHCCS-HHHHHH
T ss_pred             HHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcC--HHHHHHHHhc-chHHHHHHHHHHHhhcc-chhHHH
Confidence            6654431               1  134566778888888865  3455667654 432  577777876552 578888


Q ss_pred             HHHHHhcCCCCcH----HH-HHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHH
Q 008257          283 AVGLLAELPERDL----GL-TRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCC  357 (572)
Q Consensus       283 A~~~L~~L~~~~~----~~-~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~  357 (572)
                      ++.++.||...++    .. .+.++..++ +++++.|+..+-       .++++.+..-...-.+          .+   
T Consensus       292 ~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~-------~Dedl~edl~~L~e~L----------~~---  350 (480)
T 1ho8_A          292 CISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKY-------SDEELRQDISNLKEIL----------EN---  350 (480)
T ss_dssp             HHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCC-------SSHHHHHHHHHHHHHH----------HH---
T ss_pred             HHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhhCCC-------CcHHHHHHHHHHHHHH----------HH---
Confidence            9999999987542    22 223444444 556666664221       1333333211100000          00   


Q ss_pred             HcCchHHHHHHhccCCcHHHHHHHHHHH-HHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccch
Q 008257          358 EHNLAALFIELLQSNGLDKVQMVSATAL-ENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKET  436 (572)
Q Consensus       358 ~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL-~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~  436 (572)
                             -++-|.+   .  -++.+... +.|.+           .+++. ..-||.--       .-+.      .++.
T Consensus       351 -------~~~~lts---f--DeY~~El~sG~L~W-----------SP~H~-se~FW~EN-------a~kf------~e~~  393 (480)
T 1ho8_A          351 -------EYQELTS---F--DEYVAELDSKLLCW-----------SPPHV-DNGFWSDN-------IDEF------KKDN  393 (480)
T ss_dssp             -------HHHTCCH---H--HHHHHHHHHTCCCC-----------CGGGG-CHHHHHHH-------SGGG------SSGG
T ss_pred             -------HHHhccc---H--HHHHHHHhcCCccc-----------CCCcc-chhHHHHH-------HHHH------Hhcc
Confidence                   0111111   1  11111111 11111           11110 00111000       0000      1233


Q ss_pred             hhhhhccchHHHHHhhcC----------CCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHH
Q 008257          437 FCLLEGHAVEKLIALLDH----------TNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQ  506 (572)
Q Consensus       437 ~~l~~~g~i~~Lv~lL~~----------~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~  506 (572)
                      |.     .+..|+++|.+          .++.+...|+.=++.++.+.+   .+...+.+.||-..+.+++ +|+|++++
T Consensus       394 ~~-----llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P---~gr~i~~~lg~K~~VM~Lm-~h~d~~Vr  464 (480)
T 1ho8_A          394 YK-----IFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLP---ESIDVLDKTGGKADIMELL-NHSDSRVK  464 (480)
T ss_dssp             GH-----HHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCT---THHHHHHHHSHHHHHHHHT-SCSSHHHH
T ss_pred             hH-----HHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCc---chhHHHHHcCcHHHHHHHh-cCCCHHHH
Confidence            33     67899999973          478889999999999998765   6778888999988899999 69999999


Q ss_pred             HHHHHHHHHHHcc
Q 008257          507 RRAVWVVERILRT  519 (572)
Q Consensus       507 ~~a~~~l~~l~~~  519 (572)
                      ..|..+++++..+
T Consensus       465 ~~AL~avQklm~~  477 (480)
T 1ho8_A          465 YEALKATQAIIGY  477 (480)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998743

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.25  E-value=1.2e-07  Score=81.42  Aligned_cols=118  Identities=16%  Similarity=0.196  Sum_probs=92.0

Q ss_pred             HHHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCC
Q 008257           78 GSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFD  157 (572)
Q Consensus        78 ~~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~  157 (572)
                      .+.|+.+|+++++.+|..|+++|.++...           .++.|+++|.+.     ++.+|..|+++|+++..      
T Consensus        14 ~~~l~~~L~~~~~~vR~~A~~~L~~~~~~-----------~~~~L~~~L~d~-----~~~vR~~A~~aL~~~~~------   71 (131)
T 1te4_A           14 LVPRGSHMADENKWVRRDVSTALSRMGDE-----------AFEPLLESLSNE-----DWRIRGAAAWIIGNFQD------   71 (131)
T ss_dssp             -------CCSSCCCSSSSCCSSTTSCSST-----------THHHHHHGGGCS-----CHHHHHHHHHHHGGGCS------
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhCch-----------HHHHHHHHHcCC-----CHHHHHHHHHHHHhcCC------
Confidence            38899999999999999999988875421           379999999753     38999999999988732      


Q ss_pred             ccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHH
Q 008257          158 SITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLAS  237 (572)
Q Consensus       158 ~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a  237 (572)
                                   ...++.|+.+|.++++.++..++++|..+..              ..+++.|+.+++++++.+|..|
T Consensus        72 -------------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~--------------~~a~~~L~~~l~d~~~~vr~~A  124 (131)
T 1te4_A           72 -------------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG--------------ERVRAAMEKLAETGTGFARKVA  124 (131)
T ss_dssp             -------------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS--------------HHHHHHHHHHTTSCCTHHHHHH
T ss_pred             -------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------------HHHHHHHHHHHhCCCHHHHHHH
Confidence                         3579999999999999999999999987752              2358899999998899999999


Q ss_pred             HHHHHHc
Q 008257          238 IELIQNL  244 (572)
Q Consensus       238 ~~~L~~L  244 (572)
                      +++|..+
T Consensus       125 ~~aL~~i  131 (131)
T 1te4_A          125 VNYLETH  131 (131)
T ss_dssp             HHHGGGC
T ss_pred             HHHHHhC
Confidence            9988653

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.23  E-value=4.5e-05  Score=69.95  Aligned_cols=184  Identities=14%  Similarity=0.148  Sum_probs=142.7

Q ss_pred             CCcHHHHHHHccCCHHHHHHHHHHHHHhcc--CcchhHHHHhhhHHHHHHhcccCCHHHHHHHHHHHHHhhcCCCc-HHH
Q 008257           36 GRLQPLLTQILEGPQETKLSLAAFLGDLAL--NSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPS-AKV  112 (572)
Q Consensus        36 g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~--~~~~k~~i~~~g~~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~-~~~  112 (572)
                      +.+..|..+|.+.+..++.++..+|..+-.  ++..+..+.+...+.+|+++++.+..+...|++||..|-.+.+- .+.
T Consensus        33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~  112 (265)
T 3b2a_A           33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT  112 (265)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred             hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence            467788899999999999999999999876  35556667777779999999999999999999999999976432 322


Q ss_pred             HHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHH
Q 008257          113 LIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKL  192 (572)
Q Consensus       113 iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a  192 (572)
                      ...  .+..|..++.+++     .-++++|+..|+.+ +-.              -....++..+.+++.|.++++|.-+
T Consensus       113 y~K--l~~aL~dlik~~~-----~il~~eaae~Lgkl-kv~--------------~~~~~V~~~l~sLl~Skd~~vK~ag  170 (265)
T 3b2a_A          113 FLK--AAKTLVSLLESPD-----DMMRIETIDVLSKL-QPL--------------EDSKLVRTYINELVVSPDLYTKVAG  170 (265)
T ss_dssp             HHH--HHHHHHHHTTSCC-----HHHHHHHHHHHHHC-CBS--------------CCCHHHHHHHHHHHTCSSHHHHHHH
T ss_pred             HHH--HHHHHHHHhcCCC-----chHHHHHHHHhCcC-Ccc--------------cchHHHHHHHHHHHhCCChhHHHHH
Confidence            222  3456788887653     78999999999998 211              1235788899999999999999999


Q ss_pred             HHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 008257          193 LQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPH  247 (572)
Q Consensus       193 ~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~  247 (572)
                      +++|.+++..+... ++.     ...+.-+-.+|+++|+.+++.|+.+|..+...
T Consensus       171 l~~L~eia~~S~D~-~i~-----~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~  219 (265)
T 3b2a_A          171 FCLFLNMLNSSADS-GHL-----TLILDEIPSLLQNDNEFIVELALDVLEKALSF  219 (265)
T ss_dssp             HHHHHHHGGGCSSC-CCG-----GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHhhcccCCH-HHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            99999998865321 111     23344455788999999999999998888744

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.21  E-value=9.4e-06  Score=77.46  Aligned_cols=187  Identities=14%  Similarity=0.127  Sum_probs=134.9

Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHhccC-cchh-HHHHhhhH-HHHHHhcc-cCCHHHHHHHHHHHHHhhcCCCcHHHHH
Q 008257           39 QPLLTQILEGPQETKLSLAAFLGDLALN-SDVK-VLVARTVG-SCLINIMK-SGNMQAREAALKALNQISSCEPSAKVLI  114 (572)
Q Consensus        39 ~~Lv~~L~~~~~~~~~~aa~~L~~l~~~-~~~k-~~i~~~g~-~~Lv~lL~-s~~~~~~~~A~~aL~~Ls~~~~~~~~iv  114 (572)
                      +.+.+.+.+.+...|..++..|..+... ++.. ..+  ..+ +.|...|. ..+..++..|+.+|..|+..-...-.-.
T Consensus        18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~   95 (242)
T 2qk2_A           18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY   95 (242)
T ss_dssp             TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred             HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            3477888999999999999999887653 2211 111  134 88889994 8899999999999999995321110111


Q ss_pred             HcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHH
Q 008257          115 HAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQ  194 (572)
Q Consensus       115 ~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~  194 (572)
                      -.-.+|+|+..+...     ...+|+.|..+|.+++...               .-..+++.+...|++.++.++..++.
T Consensus        96 ~~~ilp~ll~~l~d~-----~~~vr~~a~~aL~~~~~~~---------------~~~~ll~~l~~~l~~~~~~vr~~~l~  155 (242)
T 2qk2_A           96 ASACVPSLLEKFKEK-----KPNVVTALREAIDAIYAST---------------SLEAQQESIVESLSNKNPSVKSETAL  155 (242)
T ss_dssp             HHHHHHHHHHGGGCC-----CHHHHHHHHHHHHHHHTTS---------------CHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCC-----CHHHHHHHHHHHHHHHHcC---------------CHHHHHHHHHHHHcCCChHHHHHHHH
Confidence            234788888888754     3789999999999998632               12457899999999999999999999


Q ss_pred             HHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC
Q 008257          195 VLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMG  249 (572)
Q Consensus       195 aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~  249 (572)
                      .|..+.............+  ...+|.|+.+|.+.++++|..|..++..++..-+
T Consensus       156 ~l~~~l~~~~~~~~~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg  208 (242)
T 2qk2_A          156 FIARALTRTQPTALNKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMG  208 (242)
T ss_dssp             HHHHHHTTCCGGGCCHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCCCccHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcC
Confidence            9998644321100011121  2468999999999999999999999988875433

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.20  E-value=5.7e-05  Score=69.28  Aligned_cols=176  Identities=16%  Similarity=0.146  Sum_probs=136.4

Q ss_pred             CCCCCHHHHHHHHHHHHhhccC--cchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccCcc-hhHHHHhhhHHH
Q 008257            4 SKSENLLTVEKAEKTLANLEKC--ENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSD-VKVLVARTVGSC   80 (572)
Q Consensus         4 ~~s~~~~~~~~A~~~L~~L~~~--~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~-~k~~i~~~g~~~   80 (572)
                      ++.+|+.++..|..+|..+-+.  +.-+....+. .++.+++++++.+..+...|..+|..+-.+.+ ...... .-+..
T Consensus        42 L~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~-~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~-Kl~~a  119 (265)
T 3b2a_A           42 AGEDDETTRLRAFVALGEILKRADSDLRMMVLER-HLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFL-KAAKT  119 (265)
T ss_dssp             TTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHH-HHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHH-HHHHH
T ss_pred             HhccchHHHHHHHHHHHHHHHhccccccHHHHHH-HHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHH-HHHHH
Confidence            5778999999999999998773  3334444444 78999999999999999999999998765322 222222 22488


Q ss_pred             HHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccc
Q 008257           81 LINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSIT  160 (572)
Q Consensus        81 Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~  160 (572)
                      |.+++.++++-.++.|+..|..|..-...+      +.+..+.+++.|.     +..+|..+..+|.|++..+.+..   
T Consensus       120 L~dlik~~~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl~Sk-----d~~vK~agl~~L~eia~~S~D~~---  185 (265)
T 3b2a_A          120 LVSLLESPDDMMRIETIDVLSKLQPLEDSK------LVRTYINELVVSP-----DLYTKVAGFCLFLNMLNSSADSG---  185 (265)
T ss_dssp             HHHHTTSCCHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHHTCS-----SHHHHHHHHHHHHHHGGGCSSCC---
T ss_pred             HHHHhcCCCchHHHHHHHHhCcCCcccchH------HHHHHHHHHHhCC-----ChhHHHHHHHHHHHhhcccCCHH---
Confidence            999999999999999999999995444343      3456788888664     38999999999999998665432   


Q ss_pred             cCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCC
Q 008257          161 VGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSP  203 (572)
Q Consensus       161 ~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~  203 (572)
                              .-++++..+-.+|++.++.+++.|+.+|..+.+.+
T Consensus       186 --------i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p  220 (265)
T 3b2a_A          186 --------HLTLILDEIPSLLQNDNEFIVELALDVLEKALSFP  220 (265)
T ss_dssp             --------CGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             --------HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence                    22456677788999999999999999999988875

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.15  E-value=3.5e-05  Score=77.18  Aligned_cols=281  Identities=13%  Similarity=0.069  Sum_probs=154.8

Q ss_pred             ChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHH
Q 008257          118 ILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLV  197 (572)
Q Consensus       118 ~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~  197 (572)
                      ..+..++++.+.     +..+|.-.=-.+.+++...   +..+           =++..|.+=+.++++.++..|+|+|+
T Consensus        69 lf~~v~kl~~s~-----d~~lKrLvYLyl~~~~~~~---~e~i-----------Lv~Nsl~kDl~~~N~~iR~lALRtL~  129 (355)
T 3tjz_B           69 AFFAMTKLFQSN-----DPTLRRMCYLTIKEMSCIA---EDVI-----------IVTSSLTKDMTGKEDSYRGPAVRALC  129 (355)
T ss_dssp             HHHHHHGGGGCC-----CHHHHHHHHHHHHHHTTTS---SCGG-----------GGHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCC-----CHHHHHHHHHHHHHhCCCH---HHHH-----------HHHHHHHhhcCCCcHhHHHHHHHHHh
Confidence            345556677664     2778887777777776642   1111           25778888889999999999999999


Q ss_pred             HccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCCh
Q 008257          198 GLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGIS  277 (572)
Q Consensus       198 ~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~  277 (572)
                      ++....-     .+     ...+++-..|.++++.||..|+-+...|....+ ++   + +  +.+..+-+++.+.+.  
T Consensus       130 ~I~~~~m-----~~-----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~p-e~---v-~--~~~~~l~~ll~d~n~--  190 (355)
T 3tjz_B          130 QITDSTM-----LQ-----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSF-DV---V-K--RWVNEAQEAASSDNI--  190 (355)
T ss_dssp             HHCCTTT-----HH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCH-HH---H-H--TTHHHHHHHTTCSSH--
T ss_pred             cCCCHHH-----HH-----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCH-HH---H-H--HHHHHHHHHhcCCCc--
Confidence            9987642     11     245677888899999999999999888886643 32   2 2  578889999988775  


Q ss_pred             HHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCC-hHHHHHH
Q 008257          278 KEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDE-PDAIALC  356 (572)
Q Consensus       278 ~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~-~~~~~~i  356 (572)
                      -++..|+++|..+...+..         ++..|+.-+..   +..    ..++.+-..+..+..+..   .| ++     
T Consensus       191 ~V~~~Al~lL~ei~~~d~~---------a~~kLv~~l~~---~~l----~~~~~q~~llr~l~~~~~---~d~~~-----  246 (355)
T 3tjz_B          191 MVQYHALGLLYHVRKNDRL---------AVSKMISKFTR---HGL----KSPFAYCMMIRVASRQLE---DEDGS-----  246 (355)
T ss_dssp             HHHHHHHHHHHHHHTTCHH---------HHHHHHHHHHS---SCC----SCHHHHHHHHHHHTCC---------------
T ss_pred             cHHHHHHHHHHHHHhhchH---------HHHHHHHHHhc---CCC----cChHHHHHHHHHHHHhcc---ccchh-----
Confidence            7788999999888765432         23445555433   111    134433334443333332   13 22     


Q ss_pred             HHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccch
Q 008257          357 CEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKET  436 (572)
Q Consensus       357 ~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~  436 (572)
                      .....++.|...|++. ++-|..+|+.++..+...+..                                          
T Consensus       247 ~~~~~~~~l~~~L~~~-~~aVvyEa~k~I~~l~~~~~~------------------------------------------  283 (355)
T 3tjz_B          247 RDSPLFDFIESCLRNK-HEMVVYEAASAIVNLPGCSAK------------------------------------------  283 (355)
T ss_dssp             ----------CCCCCS-SHHHHHHHHHHHTC-------------------------------------------------
T ss_pred             hHHHHHHHHHHHHcCC-ChHHHHHHHHHHHhccCCCHH------------------------------------------
Confidence            2235667788888888 889999999999876431110                                          


Q ss_pred             hhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHH
Q 008257          437 FCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVER  515 (572)
Q Consensus       437 ~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~  515 (572)
                         .-..++.+|..+|.++++.++-.|++.|..++...+      ..+..+.  .-+.+++ .++|..+...|...|.+
T Consensus       284 ---~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P------~~v~~~n--~~ie~li-~d~n~sI~t~Aittllk  350 (355)
T 3tjz_B          284 ---ELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHP------SAVTACN--LDLENLV-TDANRSIATLAITTLLK  350 (355)
T ss_dssp             -------CCCTHHHHHHSSSSSSHHHHHHCC------------------------------------------------
T ss_pred             ---HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCc------HHHHHHH--HHHHHHc-cCCcHhHHHHHHHHhhh
Confidence               012367788899999999999999999999986433      2333332  3366778 58888887777666543

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=98.05  E-value=0.00027  Score=62.12  Aligned_cols=216  Identities=10%  Similarity=0.125  Sum_probs=157.2

Q ss_pred             HcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHh-cCChhHHHHHH
Q 008257          115 HAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLIS-NTGPTIECKLL  193 (572)
Q Consensus       115 ~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~-~~~~~~q~~a~  193 (572)
                      +...+..++++|+..    . -.++.+|..++.+++..-++             ..+..+..|+-+++ +...+..+..+
T Consensus        30 d~~~l~~lI~~LDDD----l-wtV~kNAl~vi~~i~~~~~e-------------l~epl~~kL~vm~~ksEaIpltqeIa   91 (253)
T 2db0_A           30 DESVLKKLIELLDDD----L-WTVVKNAISIIMVIAKTRED-------------LYEPMLKKLFSLLKKSEAIPLTQEIA   91 (253)
T ss_dssp             CHHHHHHHHHHTTCS----C-HHHHHHHHHHHHHHHTTCGG-------------GHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred             hHHHHHHHHHHhccH----H-HHHHHhHHHHHHHHHHHhHH-------------HHHHHHHHHHHHHhhcccCchHHHHH
Confidence            566788889999641    2 36899999999999863211             12345666666665 66777777788


Q ss_pred             HHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccC
Q 008257          194 QVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISEN  273 (572)
Q Consensus       194 ~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~  273 (572)
                      +++..++....  +.+      .+.+|.|..-.+-+++.++.+-..+|..+++.++.-.    .   +.+.-+..+|+++
T Consensus        92 ~a~G~la~i~P--e~v------~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~----~---~v~rdi~smltsk  156 (253)
T 2db0_A           92 KAFGQMAKEKP--ELV------KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLM----A---SIVRDFMSMLSSK  156 (253)
T ss_dssp             HHHHHHHHHCH--HHH------HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHH----H---HHHHHHHHHTSCS
T ss_pred             HHHhHHHHhCH--HHH------HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHH----H---HHHHHHHHHhcCC
Confidence            88888876432  122      2467888888888999999999999999987754322    1   3456678889988


Q ss_pred             CCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHH
Q 008257          274 VGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAI  353 (572)
Q Consensus       274 ~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~  353 (572)
                      +.  ..+..|+..|+.+.......   +.  -.+|.|..+|.+          .++-++..++.+|.+++..   +|..|
T Consensus       157 d~--~Dkl~aLnFi~alGen~~~y---v~--PfLprL~aLL~D----------~deiVRaSaVEtL~~lA~~---npklR  216 (253)
T 2db0_A          157 NR--EDKLTALNFIEAMGENSFKY---VN--PFLPRIINLLHD----------GDEIVRASAVEALVHLATL---NDKLR  216 (253)
T ss_dssp             SH--HHHHHHHHHHHTCCTTTHHH---HG--GGHHHHHGGGGC----------SSHHHHHHHHHHHHHHHTS---CHHHH
T ss_pred             Ch--HHHHHHHHHHHHHhccCccc---cC--cchHHHHHHHcC----------cchhhhHHHHHHHHHHHHc---CHHHH
Confidence            85  78889999999886644443   32  468999999986          2566788899999999975   89988


Q ss_pred             HHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhh
Q 008257          354 ALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSL  390 (572)
Q Consensus       354 ~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~  390 (572)
                      +.+.+      -++=+++. ++.++...-.+|..+..
T Consensus       217 kii~~------kl~e~~D~-S~lv~~~V~egL~rl~l  246 (253)
T 2db0_A          217 KVVIK------RLEELNDT-SSLVNKTVKEGISRLLL  246 (253)
T ss_dssp             HHHHH------HHHHCCCS-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHH------HHHHhcCc-HHHHHHHHHHHHHHHHH
Confidence            87533      35566777 88999999999887753

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=97.99  E-value=0.0012  Score=58.11  Aligned_cols=220  Identities=13%  Similarity=0.208  Sum_probs=155.4

Q ss_pred             CChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHH
Q 008257          261 GQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLA  340 (572)
Q Consensus       261 g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~  340 (572)
                      ..+..++++|+.+- | .++..|+.++..+...-++....+     +..|+.+++.+         +..++....+.++.
T Consensus        32 ~~l~~lI~~LDDDl-w-tV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ks---------EaIpltqeIa~a~G   95 (253)
T 2db0_A           32 SVLKKLIELLDDDL-W-TVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKS---------EAIPLTQEIAKAFG   95 (253)
T ss_dssp             HHHHHHHHHTTCSC-H-HHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHC---------CSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccHH-H-HHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhc---------ccCchHHHHHHHHh
Confidence            46788888888766 4 789999999999988666665544     34566666642         22333334555565


Q ss_pred             HHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCcc
Q 008257          341 RVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVI  420 (572)
Q Consensus       341 ~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (572)
                      .++.-   +|+..+.     .+|.+..-++-+ ++++|.+-+.+|..++...+.+                         
T Consensus        96 ~la~i---~Pe~v~~-----vVp~lfanyrig-d~kikIn~~yaLeeIaranP~l-------------------------  141 (253)
T 2db0_A           96 QMAKE---KPELVKS-----MIPVLFANYRIG-DEKTKINVSYALEEIAKANPML-------------------------  141 (253)
T ss_dssp             HHHHH---CHHHHHH-----HHHHHHHHSCCC-SHHHHHHHHHHHHHHHHHCHHH-------------------------
T ss_pred             HHHHh---CHHHHHh-----hHHHHHHHHhcC-CccceecHHHHHHHHHHhChHH-------------------------
Confidence            55542   7776553     478888888888 9999999999999998754321                         


Q ss_pred             ccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhc
Q 008257          421 TGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEK  500 (572)
Q Consensus       421 ~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~  500 (572)
                                          -.+.+.-+..+|.++|..-+..|+..++-+..++.      ..+.-  -+|.|..+| ..
T Consensus       142 --------------------~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~------~yv~P--fLprL~aLL-~D  192 (253)
T 2db0_A          142 --------------------MASIVRDFMSMLSSKNREDKLTALNFIEAMGENSF------KYVNP--FLPRIINLL-HD  192 (253)
T ss_dssp             --------------------HHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTH------HHHGG--GHHHHHGGG-GC
T ss_pred             --------------------HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCc------cccCc--chHHHHHHH-cC
Confidence                                12466778899999998888888888887765432      23322  367888999 58


Q ss_pred             CCHHHHHHHHHHHHHHHcc-hhhhhhhcCCCCchHHHHHHhhcCCchhHHHHHHHHHhhcccCCCCC
Q 008257          501 RTENLQRRAVWVVERILRT-DDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHIDKIPNFSG  566 (572)
Q Consensus       501 ~~~~~~~~a~~~l~~l~~~-~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~~s~  566 (572)
                      +|+-++..|+.+|.++... +..|.-+       ..-++-+.+.+..++.++..+|..|......|+
T Consensus       193 ~deiVRaSaVEtL~~lA~~npklRkii-------~~kl~e~~D~S~lv~~~V~egL~rl~l~e~~~~  252 (253)
T 2db0_A          193 GDEIVRASAVEALVHLATLNDKLRKVV-------IKRLEELNDTSSLVNKTVKEGISRLLLLEGHSS  252 (253)
T ss_dssp             SSHHHHHHHHHHHHHHHTSCHHHHHHH-------HHHHHHCCCSCHHHHHHHHHHHHHHHHC-----
T ss_pred             cchhhhHHHHHHHHHHHHcCHHHHHHH-------HHHHHHhcCcHHHHHHHHHHHHHHHHHHhcccC
Confidence            9999999999999999854 4433222       235566778889999999999999987766553

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=97.98  E-value=0.00021  Score=71.54  Aligned_cols=256  Identities=10%  Similarity=0.032  Sum_probs=153.3

Q ss_pred             CCCCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhHHHHHH
Q 008257            4 SKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLIN   83 (572)
Q Consensus         4 ~~s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~~~Lv~   83 (572)
                      .+|+|....+-.--.+.+++..++-.. +    ++..|.+=++++++-.|-.|.++|+++...+-     .+.-.+++-+
T Consensus        77 ~~s~d~~lKrLvYLyl~~~~~~~~e~i-L----v~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m-----~~~l~~~lk~  146 (355)
T 3tjz_B           77 FQSNDPTLRRMCYLTIKEMSCIAEDVI-I----VTSSLTKDMTGKEDSYRGPAVRALCQITDSTM-----LQAIERYMKQ  146 (355)
T ss_dssp             GGCCCHHHHHHHHHHHHHHTTTSSCGG-G----GHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTT-----HHHHHHHHHH
T ss_pred             hcCCCHHHHHHHHHHHHHhCCCHHHHH-H----HHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHH-----HHHHHHHHHH
Confidence            467777777766666666666422211 2    35677888899999999999999998866431     2222288999


Q ss_pred             hcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCC
Q 008257           84 IMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGP  163 (572)
Q Consensus        84 lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~  163 (572)
                      .|.+.++.++..|+-+..+|....+  + +++ +.++.+-+++.+.     ++.++..|..+|..+..++          
T Consensus       147 ~L~d~~pyVRk~A~l~~~kL~~~~p--e-~v~-~~~~~l~~ll~d~-----n~~V~~~Al~lL~ei~~~d----------  207 (355)
T 3tjz_B          147 AIVDKVPSVSSSALVSSLHLLKCSF--D-VVK-RWVNEAQEAASSD-----NIMVQYHALGLLYHVRKND----------  207 (355)
T ss_dssp             HHTCSSHHHHHHHHHHHHHHTTTCH--H-HHH-TTHHHHHHHTTCS-----SHHHHHHHHHHHHHHHTTC----------
T ss_pred             HcCCCCHHHHHHHHHHHHHHhccCH--H-HHH-HHHHHHHHHhcCC-----CccHHHHHHHHHHHHHhhc----------
Confidence            9999999999999999999875433  2 343 7899999999754     3778889999999987532          


Q ss_pred             CccccchhhhHHHHHHHHhcC---ChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHH
Q 008257          164 DNQTLVSEDIVHNLLHLISNT---GPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIEL  240 (572)
Q Consensus       164 ~~~~l~~~~~i~~Lv~lL~~~---~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~  240 (572)
                             ...+..|+..+...   ++-.|...++.+..++.....  ..     ....++.|..+|++.++.|.-.|+++
T Consensus       208 -------~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~--~~-----~~~~~~~l~~~L~~~~~aVvyEa~k~  273 (355)
T 3tjz_B          208 -------RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDG--SR-----DSPLFDFIESCLRNKHEMVVYEAASA  273 (355)
T ss_dssp             -------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC------------------------CCCCCSSHHHHHHHHHH
T ss_pred             -------hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccch--hh-----HHHHHHHHHHHHcCCChHHHHHHHHH
Confidence                   12466677666553   466777778877666654311  11     23466778888899999999999999


Q ss_pred             HHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhh
Q 008257          241 IQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKS  316 (572)
Q Consensus       241 L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~  316 (572)
                      +-.+.....     .+..  .++..|..+|.++++  .+|..|+..|..+....++..+     ..-.-+.+++.+
T Consensus       274 I~~l~~~~~-----~~~~--~a~~~L~~fLss~d~--niryvaLr~L~~l~~~~P~~v~-----~~n~~ie~li~d  335 (355)
T 3tjz_B          274 IVNLPGCSA-----KELA--PAVSVLQLFCSSPKA--ALRYAAVRTLNKVAMKHPSAVT-----ACNLDLENLVTD  335 (355)
T ss_dssp             HTC------------------CCCTHHHHHHSSSS--SSHHHHHHCC-----------------------------
T ss_pred             HHhccCCCH-----HHHH--HHHHHHHHHHcCCCc--hHHHHHHHHHHHHHHHCcHHHH-----HHHHHHHHHccC
Confidence            988865221     1222  467888889988886  7899999998888776555432     123345555655

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=97.90  E-value=4.2e-05  Score=72.84  Aligned_cols=184  Identities=13%  Similarity=0.127  Sum_probs=132.3

Q ss_pred             HHHHHhcccCCHHHHHHHHHHHHHhhcC-CCcHHHHHHcCChHHHHHHHh-ccCCCCCCcchHHHHHHHHHHHHhcCCCC
Q 008257           79 SCLINIMKSGNMQAREAALKALNQISSC-EPSAKVLIHAGILPPLVKDLF-TVGSNHLPMRLKEVSATILANVVNSGHDF  156 (572)
Q Consensus        79 ~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~-~~~~~~iv~~G~i~~Lv~lL~-s~~~~~~~~~~~~~aa~~L~nla~~~~~~  156 (572)
                      +.+.+.+.+.+-..|..|+..|..+... +.....-. ...++.|..+|. ..     ...++..|+.+|+.|+..-.. 
T Consensus        18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~-----~~~V~~~a~~~l~~la~~l~~-   90 (242)
T 2qk2_A           18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDS-----NVVLVAMAGKCLALLAKGLAK-   90 (242)
T ss_dssp             TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCS-----CHHHHHHHHHHHHHHHHHHGG-
T ss_pred             HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCC-----CHHHHHHHHHHHHHHHHHHhh-
Confidence            5688899999999999999999999864 32110000 134667777773 43     378999999999999863210 


Q ss_pred             CccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHH
Q 008257          157 DSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLA  236 (572)
Q Consensus       157 ~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~  236 (572)
                       .+       .-....++|.++..+.+..+.++..+..+|..+.....    ..      ..++.|...++++++.+|..
T Consensus        91 -~~-------~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~----~~------~ll~~l~~~l~~~~~~vr~~  152 (242)
T 2qk2_A           91 -RF-------SNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS----LE------AQQESIVESLSNKNPSVKSE  152 (242)
T ss_dssp             -GG-------HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC----HH------HHHHHHHHHTTCSCHHHHHH
T ss_pred             -hH-------HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC----HH------HHHHHHHHHHcCCChHHHHH
Confidence             00       01235588999999999999999999999998877542    11      24677888999999999999


Q ss_pred             HHHHHHHcC-CCCChh-HHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCC
Q 008257          237 SIELIQNLS-PHMGHE-LADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPE  292 (572)
Q Consensus       237 a~~~L~~Ls-~~~~~~-~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~  292 (572)
                      ++..|..+. ...+.. ....+.   ..+|.|+.+|..++.  ++|..|..+++.+..
T Consensus       153 ~l~~l~~~l~~~~~~~~~~~~l~---~l~p~l~~~l~D~~~--~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          153 TALFIARALTRTQPTALNKKLLK---LLTTSLVKTLNEPDP--TVRDSSAEALGTLIK  205 (242)
T ss_dssp             HHHHHHHHHTTCCGGGCCHHHHH---HHHHHHHHHHTSSCH--HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCccHHHHH---HHHHHHHHHhcCCCh--HHHHHHHHHHHHHHH
Confidence            999999954 432221 122333   368899999987774  899999998877643

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=97.72  E-value=0.0003  Score=67.27  Aligned_cols=190  Identities=14%  Similarity=0.123  Sum_probs=132.5

Q ss_pred             HHHHHccCCHHHHHHHHHHHHH-hccC-cchhHHHHh-hhH-HHHHHhc-ccCCHHHHHHHHHHHHHhhcCC---CcH-H
Q 008257           41 LLTQILEGPQETKLSLAAFLGD-LALN-SDVKVLVAR-TVG-SCLINIM-KSGNMQAREAALKALNQISSCE---PSA-K  111 (572)
Q Consensus        41 Lv~~L~~~~~~~~~~aa~~L~~-l~~~-~~~k~~i~~-~g~-~~Lv~lL-~s~~~~~~~~A~~aL~~Ls~~~---~~~-~  111 (572)
                      +-..+.+.++..|..|...|.. +... .+....-.. ..+ ..|.+.| +..+..++..|+.+|..|+..-   ... .
T Consensus        21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~  100 (249)
T 2qk1_A           21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD  100 (249)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence            4567788999999999999998 7532 111100011 133 7788888 6788999999999999999532   211 2


Q ss_pred             HHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHH
Q 008257          112 VLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECK  191 (572)
Q Consensus       112 ~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~  191 (572)
                      ..  .-.+|+++..+...     ...+++.+..+|-.++.+.+....        .-.-+.+++.|+..|++..+.+|..
T Consensus       101 y~--~~llp~ll~~l~dk-----k~~V~~aa~~al~~i~~~~~~~~~--------~~~l~~ll~~l~~~l~~k~~~vk~~  165 (249)
T 2qk1_A          101 YV--SLVFTPLLDRTKEK-----KPSVIEAIRKALLTICKYYDPLAS--------SGRNEDMLKDILEHMKHKTPQIRME  165 (249)
T ss_dssp             HH--HHHHHHHHHGGGCC-----CHHHHHHHHHHHHHHHHHSCTTCT--------TCTTHHHHHHHHHHTTCSSHHHHHH
T ss_pred             HH--HHHHHHHHHHHcCC-----CHHHHHHHHHHHHHHHHHcccccc--------CCcHHHHHHHHHHHHcCCChHHHHH
Confidence            22  22688888888754     278899999999999875321100        0002468899999999999999999


Q ss_pred             HHHHHHHccCCCCcc-HHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 008257          192 LLQVLVGLTSSPTTV-LSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSP  246 (572)
Q Consensus       192 a~~aL~~l~~~~~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~  246 (572)
                      ++.+|..+....... ...... .....+|.|.+++...++++|..|..++..++.
T Consensus       166 al~~l~~~~~~~~~~~~~l~~~-l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          166 CTQLFNASMKEEKDGYSTLQRY-LKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK  220 (249)
T ss_dssp             HHHHHHHHHHHCCSCSHHHHHH-HTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCcchhHHHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            999998887543210 111111 124689999999999999999999999987763

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=97.68  E-value=0.015  Score=59.75  Aligned_cols=341  Identities=13%  Similarity=0.109  Sum_probs=194.5

Q ss_pred             hhhHHHHHHHHh-cCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChH-HHHH-HhcCCCHHHHHHHHHHHHHcCCC
Q 008257          171 EDIVHNLLHLIS-NTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATI-SLVQ-FVEAPQNDLRLASIELIQNLSPH  247 (572)
Q Consensus       171 ~~~i~~Lv~lL~-~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~-~Lv~-lL~~~~~~v~~~a~~~L~~Ls~~  247 (572)
                      ...+..++++|. ....++.+..+..+..+.......+.....+.+..... .+.. ++..++.-....+..++..++..
T Consensus        76 ~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~  155 (480)
T 1ho8_A           76 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN  155 (480)
T ss_dssp             STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred             chHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence            346788999998 46778888888777777655321112233334433322 2333 33334455667777777777633


Q ss_pred             CC--hhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCC--hHHHHHHHhhhccCCC-
Q 008257          248 MG--HELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGA--FGLIFSRVKSIQLGET-  322 (572)
Q Consensus       248 ~~--~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~--l~~Lv~lL~~~~~~~~-  322 (572)
                      ..  .+..+.+...    +.+...|.+... ...+..++.+|..|.. .++.+..+++.++  +|+++.+++..-.+.. 
T Consensus       156 ~~~~~~~l~~l~~~----~~~~~~L~~~~~-~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~  229 (480)
T 1ho8_A          156 GLHNVKLVEKLLKN----NNLINILQNIEQ-MDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLA  229 (480)
T ss_dssp             TTCCHHHHHHHHHC----HHHHHHHHCTTC-HHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC----
T ss_pred             CCccHhHHHHHhhh----HHHHHHhccccC-CchHHHHHHHHHHHhc-chhHHHHHHHcccchhHHHHHHHHHhhccccc
Confidence            21  2221222221    146666666432 2445567888887776 6788888887654  7888777664210100 


Q ss_pred             ------CCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCch--HHHHHHhccCCcHHHHHHHHHHHHHhhhhccc
Q 008257          323 ------RGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLA--ALFIELLQSNGLDKVQMVSATALENLSLESKN  394 (572)
Q Consensus       323 ------~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i--~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~  394 (572)
                            .+.....+++-.++-.++-++.    +++..+.+...++.  +.|++.++....+++-+.+..+|.|+......
T Consensus       230 ~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF----~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~  305 (480)
T 1ho8_A          230 TRIVATNSNHLGIQLQYHSLLLIWLLTF----NPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVK  305 (480)
T ss_dssp             ---------CCHHHHHHHHHHHHHHHTT----SHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSST
T ss_pred             cccccccCCCccHHHHHHHHHHHHHHHc----CHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccch
Confidence                  0112246677788888888884    67788888877754  67788888764788889999999998653210


Q ss_pred             cCCCCCCCCCCCCccccccccCCCccccccccccCccCccchh-hhhhccchHHHHHhhcC---CCHhHHHHHHHHHHHh
Q 008257          395 LTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETF-CLLEGHAVEKLIALLDH---TNEKVVEASLAALSTV  470 (572)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~-~l~~~g~i~~Lv~lL~~---~~~~v~~~A~~aL~~l  470 (572)
                      ...                                    .... .++..++ +++++.|..   +|+++.+..-.....|
T Consensus       306 ~~~------------------------------------~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L  348 (480)
T 1ho8_A          306 QHK------------------------------------KVIKQLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEIL  348 (480)
T ss_dssp             THH------------------------------------HHHHHHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHH
T ss_pred             hhh------------------------------------hHHHHHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHH
Confidence            000                                    0000 0222333 667777754   5666654332222221


Q ss_pred             h---------------------hcCc------cchhhHHHHHhc--CChHHHHHHHhh---------cCCHHHHHHHHHH
Q 008257          471 I---------------------DDGV------DIEQGVMVLCEA--QGIKPILDVLLE---------KRTENLQRRAVWV  512 (572)
Q Consensus       471 ~---------------------~~~~------~~~~~~~~i~~~--g~i~~L~~lL~~---------~~~~~~~~~a~~~  512 (572)
                      -                     .-++      -|.+++..+.+.  ..++.|+++|..         +.|+....-|+.=
T Consensus       349 ~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~D  428 (480)
T 1ho8_A          349 ENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALND  428 (480)
T ss_dssp             HHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHH
T ss_pred             HHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeeccc
Confidence            1                     0001      022222233221  234568888842         2245555455555


Q ss_pred             HHHHHcc-hhhhhhhcCCCCchHHHHHHhhcCCchhHHHHHHHHHhhc
Q 008257          513 VERILRT-DDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHID  559 (572)
Q Consensus       513 l~~l~~~-~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~  559 (572)
                      |..++++ ++.+..+..-++= ....+|+.+.|++||..|-.|+..+-
T Consensus       429 igefvr~~P~gr~i~~~lg~K-~~VM~Lm~h~d~~Vr~~AL~avQklm  475 (480)
T 1ho8_A          429 ITHVVELLPESIDVLDKTGGK-ADIMELLNHSDSRVKYEALKATQAII  475 (480)
T ss_dssp             HHHHHHHCTTHHHHHHHHSHH-HHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCcchhHHHHHcCcH-HHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            6777765 6666555443333 46889999999999999998887653

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=97.53  E-value=0.019  Score=65.89  Aligned_cols=392  Identities=16%  Similarity=0.136  Sum_probs=199.8

Q ss_pred             hH-HHHHHhccc--CCHHHHHHHHHHHHHhhcC-----------CCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHH
Q 008257           77 VG-SCLINIMKS--GNMQAREAALKALNQISSC-----------EPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVS  142 (572)
Q Consensus        77 g~-~~Lv~lL~s--~~~~~~~~A~~aL~~Ls~~-----------~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~a  142 (572)
                      |. ..|++.+.+  .+..+|..|+-.|.|....           ++..+..++..    |+..+.+.     +..++...
T Consensus        35 ~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~~----ll~~l~~~-----~~~ir~~l  105 (960)
T 1wa5_C           35 GFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKE----IVPLMISL-----PNNLQVQI  105 (960)
T ss_dssp             THHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHH----HHHHHHHS-----CHHHHHHH
T ss_pred             CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHH----HHHHHHhC-----CHHHHHHH
Confidence            45 778888754  3578899999999997632           11122223333    34444332     26789999


Q ss_pred             HHHHHHHHhcC--CCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCC---ccHHHHHHHH--h
Q 008257          143 ATILANVVNSG--HDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPT---TVLSVVSAIK--S  215 (572)
Q Consensus       143 a~~L~nla~~~--~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~---~~~~~~~~i~--~  215 (572)
                      +.+++.++..+  ..|.              +.++.|++++.++++..+..++.+|..++....   ..++.+..+.  -
T Consensus       106 ~~~ia~ia~~d~p~~Wp--------------~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l  171 (960)
T 1wa5_C          106 GEAISSIADSDFPDRWP--------------TLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVL  171 (960)
T ss_dssp             HHHHHHHHHHHSTTTCT--------------THHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCccchh--------------HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHH
Confidence            99999998752  3343              479999999998888888899999998886321   0012222111  0


Q ss_pred             cCChHHHHHH-------hcCCCH---------HHHHHHHHHHHHcCCC-CChhHHHHHhcccCChhhHHhhhccCC----
Q 008257          216 SGATISLVQF-------VEAPQN---------DLRLASIELIQNLSPH-MGHELADALRGAVGQLGSLIRVISENV----  274 (572)
Q Consensus       216 ~g~i~~Lv~l-------L~~~~~---------~v~~~a~~~L~~Ls~~-~~~~~~~~i~~~~g~l~~Lv~lL~~~~----  274 (572)
                      ..-.++++.+       +.....         ++...++++++.+... .+....+.+.   ..++.+..+|....    
T Consensus       172 ~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~---~~~~~~~~~l~~~~p~~~  248 (960)
T 1wa5_C          172 DVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQ---VGMGIFHKYLSYSNPLLE  248 (960)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHH---HHHHHHHHHHSCCSCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH---HHHHHHHHHHcCCCCccc
Confidence            1124444443       333221         2233466777766533 2322222222   23445555554311    


Q ss_pred             ----C-----ChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhcc
Q 008257          275 ----G-----ISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFV  345 (572)
Q Consensus       275 ----~-----~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~  345 (572)
                          +     ...++..+..++..+....++.-...+ ...++..+..+.+..  .   ......+...++..+..++. 
T Consensus       249 ~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~-~~~~~~~~~~l~~~~--~---~~~~~~~~~~al~fl~~~~~-  321 (960)
T 1wa5_C          249 DPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMI-NEFIQITWNLLTSIS--N---QPKYDILVSKSLSFLTAVTR-  321 (960)
T ss_dssp             ------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHHCC--S---CTTSHHHHHHHHHHHHHHHT-
T ss_pred             CCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcC--C---CcCcHHHHHHHHHHHHHHhC-
Confidence                0     013455556666555432222111111 133445555554311  0   01234455566666666652 


Q ss_pred             CCCChHHHHHHHHcCchHHHH-----HHhccC--------Cc--------------HHHHHHHHHHHHHhhhhccccCCC
Q 008257          346 LSDEPDAIALCCEHNLAALFI-----ELLQSN--------GL--------------DKVQMVSATALENLSLESKNLTKL  398 (572)
Q Consensus       346 ~~~~~~~~~~i~~~g~i~~Lv-----~lL~~~--------~~--------------~~vk~~Aa~aL~~ls~~~~~~~~~  398 (572)
                         .+..++.+...+.++.++     ..+.-.        .+              ...+..|...|..++..-      
T Consensus       322 ---~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~------  392 (960)
T 1wa5_C          322 ---IPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKN------  392 (960)
T ss_dssp             ---SHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHC------
T ss_pred             ---cHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHc------
Confidence               232222111112222222     222110        00              123333333443333211      


Q ss_pred             CCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHh----hc------CCCHhHHHHHHHHHH
Q 008257          399 PELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIAL----LD------HTNEKVVEASLAALS  468 (572)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~l----L~------~~~~~v~~~A~~aL~  468 (572)
                                                                ....+++++..    |.      +.+-..+++|+.+++
T Consensus       393 ------------------------------------------~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~alg  430 (960)
T 1wa5_C          393 ------------------------------------------EVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFT  430 (960)
T ss_dssp             ------------------------------------------HHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHH
T ss_pred             ------------------------------------------chhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHH
Confidence                                                      11133333333    43      455678999999999


Q ss_pred             HhhhcCccchhh---------HHHHHhcCChHHHHHHHhhcC---CHHHHHHHHHHHHHHHcchhhhhhhcCCCCchHHH
Q 008257          469 TVIDDGVDIEQG---------VMVLCEAQGIKPILDVLLEKR---TENLQRRAVWVVERILRTDDIAYEVSGDPNVSTAL  536 (572)
Q Consensus       469 ~l~~~~~~~~~~---------~~~i~~~g~i~~L~~lL~~~~---~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L  536 (572)
                      .++..+.....+         ...+..    ..++..|+ ++   ++.+|..|+|++.+++.+-  ..++..  .+...+
T Consensus       431 aia~~~~~~~~~~~~~~~~~~l~~~l~----~~v~p~l~-~~~~~~p~vr~~a~~~lg~~~~~~--~~~~l~--~~l~~l  501 (960)
T 1wa5_C          431 ALAINGNITNAGVSSTNNLLNVVDFFT----KEIAPDLT-SNNIPHIILRVDAIKYIYTFRNQL--TKAQLI--ELMPIL  501 (960)
T ss_dssp             HHHBSSCCBTTBCCCBCTTCCHHHHHH----HHTHHHHH-CSSCSCHHHHHHHHHHHHHTGGGS--CHHHHH--HHHHHH
T ss_pred             HHHHHhccccCCcccccccccHHHHHH----HHhHHHhc-CCCCCCceehHHHHHHHHHHHhhC--CHHHHH--HHHHHH
Confidence            998532100000         111100    11233443 45   7889999999999998651  111111  122367


Q ss_pred             HHHhhcCCchhHHHHHHHHHhhccc
Q 008257          537 VDAFQHADYRTRQIAERALKHIDKI  561 (572)
Q Consensus       537 v~ll~~~~~~~~~~Aa~aL~~L~~~  561 (572)
                      ++.|.+.++.|+..|++||.++...
T Consensus       502 ~~~L~d~~~~V~~~A~~Al~~~~~~  526 (960)
T 1wa5_C          502 ATFLQTDEYVVYTYAAITIEKILTI  526 (960)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             HHHhCCCChhHHHHHHHHHHHHHhc
Confidence            8888888899999999999998864

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=97.50  E-value=0.00062  Score=65.06  Aligned_cols=210  Identities=10%  Similarity=0.117  Sum_probs=137.6

Q ss_pred             HHHHHhcccCCHHHHHHHHHHHHH-hhc-CCCcHHHHHH-cCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCC-
Q 008257           79 SCLINIMKSGNMQAREAALKALNQ-ISS-CEPSAKVLIH-AGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGH-  154 (572)
Q Consensus        79 ~~Lv~lL~s~~~~~~~~A~~aL~~-Ls~-~~~~~~~iv~-~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~-  154 (572)
                      +.+.+.+.|.+...|..|+.+|.. +.. .++....-.+ ...+..|.+.+..    +....++..|+.+|+.|+.+-. 
T Consensus        19 ~~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~----D~n~~v~~~A~~al~~la~~l~~   94 (249)
T 2qk1_A           19 KDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQK----DANIQAVALAAQSVELICDKLKT   94 (249)
T ss_dssp             TTHHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHH----CSCHHHHHHHHHHHHHHHHHHCT
T ss_pred             hhHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhcc----CCCHHHHHHHHHHHHHHHHhccc
Confidence            456677889999999999999999 873 2221100001 1236666777732    1237789999999999996421 


Q ss_pred             -CCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHH
Q 008257          155 -DFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDL  233 (572)
Q Consensus       155 -~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v  233 (572)
                       .+..         =....++|.++..+....+.++..+..+|..++...+.. .....  -...++.|+..|+++++.+
T Consensus        95 ~~f~~---------~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~-~~~~~--l~~ll~~l~~~l~~k~~~v  162 (249)
T 2qk1_A           95 PGFSK---------DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPL-ASSGR--NEDMLKDILEHMKHKTPQI  162 (249)
T ss_dssp             TTSCH---------HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTT-CTTCT--THHHHHHHHHHTTCSSHHH
T ss_pred             ccccH---------HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcccc-ccCCc--HHHHHHHHHHHHcCCChHH
Confidence             1110         022457899999999988999998888877776532100 00000  0124678888999999999


Q ss_pred             HHHHHHHHHHcCCCCC---hhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHH
Q 008257          234 RLASIELIQNLSPHMG---HELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLI  310 (572)
Q Consensus       234 ~~~a~~~L~~Ls~~~~---~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~L  310 (572)
                      |+.++.+|..+....+   ..+...+..  ..+|.|.+++...+.  ++|..|..++..+.        ..+....+.++
T Consensus       163 k~~al~~l~~~~~~~~~~~~~l~~~l~~--~iip~l~~~l~D~~~--~VR~aA~~~l~~i~--------~~vG~~~~~p~  230 (249)
T 2qk1_A          163 RMECTQLFNASMKEEKDGYSTLQRYLKD--EVVPIVIQIVNDTQP--AIRTIGFESFAILI--------KIFGMNTFVKT  230 (249)
T ss_dssp             HHHHHHHHHHHHHHCCSCSHHHHHHHTT--THHHHHHHHHTCSSH--HHHHHHHHHHHHHH--------HHHCSGGGHHH
T ss_pred             HHHHHHHHHHHHHHcCCcchhHHHHHHH--HHHHHHHHHhcCCCH--HHHHHHHHHHHHHH--------HHhCHHHHHHH
Confidence            9999999988875433   333333412  479999999987775  89999998887753        23444456666


Q ss_pred             HHHHhh
Q 008257          311 FSRVKS  316 (572)
Q Consensus       311 v~lL~~  316 (572)
                      +.-|.+
T Consensus       231 l~~Ld~  236 (249)
T 2qk1_A          231 LEHLDN  236 (249)
T ss_dssp             HHHSCH
T ss_pred             HHHHhH
Confidence            666654

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.33  E-value=0.011  Score=66.57  Aligned_cols=268  Identities=11%  Similarity=0.136  Sum_probs=167.7

Q ss_pred             CChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCh--hHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCC-C
Q 008257          217 GATISLVQFVEAPQNDLRLASIELIQNLSPHMGH--ELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPE-R  293 (572)
Q Consensus       217 g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~--~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~-~  293 (572)
                      +.+..|.+.+..+...  +.|+.++..|+...+.  .. +...-  +.++.++..+.....  .++.+|..++..+.. -
T Consensus        54 ~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~-e~~~~--~~~~~~~~~~~dk~~--~v~~aa~~~~~~~~~~~  126 (986)
T 2iw3_A           54 HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSV-EPYIV--QLVPAICTNAGNKDK--EIQSVASETLISIVNAV  126 (986)
T ss_dssp             HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTT-HHHHH--TTHHHHHHHTTCSSH--HHHHHHHHHHHHHHHHS
T ss_pred             hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCc-ccchH--HHHHHHHHHhcCCch--HHHHHHHHHHHHHHHhC
Confidence            4667777787766544  8999999999954321  22 22222  467888888776664  677666655443322 1


Q ss_pred             cHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCC
Q 008257          294 DLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNG  373 (572)
Q Consensus       294 ~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~  373 (572)
                      +++-.     ...+|.|+..|.+..         .=+.+..|+..+..++..   .|+. -...--.+||.+-+.+.+. 
T Consensus       127 ~~~a~-----~~~~~~~~~~~~~~~---------kw~~k~~~l~~~~~~~~~---~~~~-~~~~~~~~~p~~~~~~~d~-  187 (986)
T 2iw3_A          127 NPVAI-----KALLPHLTNAIVETN---------KWQEKIAILAAFSAMVDA---AKDQ-VALRMPELIPVLSETMWDT-  187 (986)
T ss_dssp             CGGGH-----HHHHHHHHHHHHHCC---------CHHHHHHHHHHHHHHHHH---SHHH-HHHHHHHHHHHHHHHTTCS-
T ss_pred             CHHHH-----HHHHHHHHHHhcccc---------chHHHHHHHHHHHHHHHH---hHHH-HHHhccchhcchHhhcccC-
Confidence            22222     245799999886521         112366788888888842   2332 2233346889999999888 


Q ss_pred             cHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhc
Q 008257          374 LDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLD  453 (572)
Q Consensus       374 ~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~  453 (572)
                      .++|+..|-.++..++..-.|.+                                            =...||.||+.+.
T Consensus       188 k~~v~~~~~~~~~~~~~~~~n~d--------------------------------------------~~~~~~~~~~~~~  223 (986)
T 2iw3_A          188 KKEVKAAATAAMTKATETVDNKD--------------------------------------------IERFIPSLIQCIA  223 (986)
T ss_dssp             SHHHHHHHHHHHHHHGGGCCCTT--------------------------------------------TGGGHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhcCCCcc--------------------------------------------hhhhHHHHHHHhc
Confidence            89999999999877764332211                                            0247899999999


Q ss_pred             CCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcc---hhhhhhhcCCC
Q 008257          454 HTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRT---DDIAYEVSGDP  530 (572)
Q Consensus       454 ~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~---~~~~~~~~~~~  530 (572)
                      .+++  +..++..|+.-..-.+ .+.-.-.+.    +|.|.+=| ..++..++++++-++.|+++.   +.....|..  
T Consensus       224 ~p~~--~~~~~~~l~~~tfv~~-v~~~~l~~~----~p~l~r~l-~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~--  293 (986)
T 2iw3_A          224 DPTE--VPETVHLLGATTFVAE-VTPATLSIM----VPLLSRGL-NERETGIKRKSAVIIDNMCKLVEDPQVIAPFLG--  293 (986)
T ss_dssp             CTTH--HHHHHHHHTTCCCCSC-CCHHHHHHH----HHHHHHHH-TSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHT--
T ss_pred             Chhh--hHHHHHHhhcCeeEee-ecchhHHHH----HHHHHhhh-ccCcchhheeeEEEEcchhhhcCCHHHHhhhhh--
Confidence            8744  4455555553322111 111122222    35666667 367888999999999999964   444445544  


Q ss_pred             CchHHHHHHhh-cCCchhHHHHHHHHHhhcccCCC
Q 008257          531 NVSTALVDAFQ-HADYRTRQIAERALKHIDKIPNF  564 (572)
Q Consensus       531 ~~~~~Lv~ll~-~~~~~~~~~Aa~aL~~L~~~~~~  564 (572)
                      .+-+.|-+... -.+|++|+.|.+|+..|.+..+.
T Consensus       294 ~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~  328 (986)
T 2iw3_A          294 KLLPGLKSNFATIADPEAREVTLRALKTLRRVGNV  328 (986)
T ss_dssp             TTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             hhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhcc
Confidence            34334544444 47799999999999999775443

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.26  E-value=0.0034  Score=61.26  Aligned_cols=154  Identities=14%  Similarity=0.139  Sum_probs=117.7

Q ss_pred             HHHHHhcccCCHHHHHHHHHHHHH-hhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCC
Q 008257           79 SCLINIMKSGNMQAREAALKALNQ-ISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFD  157 (572)
Q Consensus        79 ~~Lv~lL~s~~~~~~~~A~~aL~~-Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~  157 (572)
                      ..+++-|.+++.+.++.++.-|.. ++.+.+.....++.||+..|+++....     +.+.+.++..++.+|-.+..++.
T Consensus       121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~-----~gN~q~Y~L~AL~~LM~~v~Gm~  195 (339)
T 3dad_A          121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA-----DHNYQSYILRALGQLMLFVDGML  195 (339)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS-----CHHHHHHHHHHHHHHTTSHHHHH
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc-----ChHHHHHHHHHHHHHHhcccccc
Confidence            567788888888999999999999 667788899999999999999999764     37889999999999965421111


Q ss_pred             ccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCC-ccHHHHHHHH---hcC---ChHHHHHHhc---
Q 008257          158 SITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPT-TVLSVVSAIK---SSG---ATISLVQFVE---  227 (572)
Q Consensus       158 ~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~-~~~~~~~~i~---~~g---~i~~Lv~lL~---  227 (572)
                              ..+.....|..+..++.+.+..+...++..|..++...+ +...+.+++.   ...   -...|+.+|.   
T Consensus       196 --------gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~  267 (339)
T 3dad_A          196 --------GVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKN  267 (339)
T ss_dssp             --------HHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTT
T ss_pred             --------chhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccC
Confidence                    133456789999999999888999999999999987653 2112222222   122   3779999997   


Q ss_pred             CCCHHHHHHHHHHHHHcC
Q 008257          228 APQNDLRLASIELIQNLS  245 (572)
Q Consensus       228 ~~~~~v~~~a~~~L~~Ls  245 (572)
                      +.+.+++.+|..++..+-
T Consensus       268 ~~D~elq~~amtLIN~lL  285 (339)
T 3dad_A          268 GADPELLVYTVTLINKTL  285 (339)
T ss_dssp             SCCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHH
Confidence            778899999988776654

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.21  E-value=0.044  Score=61.83  Aligned_cols=299  Identities=12%  Similarity=0.116  Sum_probs=184.0

Q ss_pred             HHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhH-HHHHHhcccCCHHHHHHHHHHHHHhhcCCCc--HHHHHHcC
Q 008257           41 LLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVG-SCLINIMKSGNMQAREAALKALNQISSCEPS--AKVLIHAG  117 (572)
Q Consensus        41 Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~--~~~iv~~G  117 (572)
                      +++-++.+...-+..++..+..+...+..-..+ ..++ ..|.+.+......  +.|+.++..|+.....  ..+-.--+
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~   95 (986)
T 2iw3_A           19 LFQKLSVATADNRHEIASEVASFLNGNIIEHDV-PEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQ   95 (986)
T ss_dssp             HHHHHTTCCTTTHHHHHHHHHHHHTSSCSSSSC-CHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHT
T ss_pred             HHhhccccchhHHHHHHHHHHHHHhcccccccc-chhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHH
Confidence            455565544444456777777765432111111 1245 7777777653323  8999999999954322  11222235


Q ss_pred             ChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcC-ChhHHHHHHHHH
Q 008257          118 ILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNT-GPTIECKLLQVL  196 (572)
Q Consensus       118 ~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~-~~~~q~~a~~aL  196 (572)
                      .+|.++..+...     ...+|..|..++..++..-+            .-....++|.|+..|.++ ..+.+..|+.++
T Consensus        96 ~~~~~~~~~~dk-----~~~v~~aa~~~~~~~~~~~~------------~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~  158 (986)
T 2iw3_A           96 LVPAICTNAGNK-----DKEIQSVASETLISIVNAVN------------PVAIKALLPHLTNAIVETNKWQEKIAILAAF  158 (986)
T ss_dssp             THHHHHHHTTCS-----SHHHHHHHHHHHHHHHHHSC------------GGGHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCC-----chHHHHHHHHHHHHHHHhCC------------HHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence            778887777643     26788888888888876432            112267899999988765 688899999999


Q ss_pred             HHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCC-CChhHHHHHhcccCChhhHHhhhccCCC
Q 008257          197 VGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPH-MGHELADALRGAVGQLGSLIRVISENVG  275 (572)
Q Consensus       197 ~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~-~~~~~~~~i~~~~g~l~~Lv~lL~~~~~  275 (572)
                      ..++....  +.+-..  -...||.+-+.+-...++|+..|..++..++.. .+.++    .   ..+|.||+.+.+++.
T Consensus       159 ~~~~~~~~--~~~~~~--~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~----~---~~~~~~~~~~~~p~~  227 (986)
T 2iw3_A          159 SAMVDAAK--DQVALR--MPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI----E---RFIPSLIQCIADPTE  227 (986)
T ss_dssp             HHHHHHSH--HHHHHH--HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT----G---GGHHHHHHHHHCTTH
T ss_pred             HHHHHHhH--HHHHHh--ccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch----h---hhHHHHHHHhcChhh
Confidence            99986532  122222  234677777777777899999999999988854 23343    1   579999999999863


Q ss_pred             ChHHHHHHHHHHhcCCCC---cHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHH
Q 008257          276 ISKEQAAAVGLLAELPER---DLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDA  352 (572)
Q Consensus       276 ~~~~~~~A~~~L~~L~~~---~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~  352 (572)
                         +.. ++-.|+.-+.-   +...-. +    .+|.|..-|...          ...++..++-.+-|++.-. +||..
T Consensus       228 ---~~~-~~~~l~~~tfv~~v~~~~l~-~----~~p~l~r~l~~~----------~~~~~r~~~~~~~n~~~lv-~~~~~  287 (986)
T 2iw3_A          228 ---VPE-TVHLLGATTFVAEVTPATLS-I----MVPLLSRGLNER----------ETGIKRKSAVIIDNMCKLV-EDPQV  287 (986)
T ss_dssp             ---HHH-HHHHHTTCCCCSCCCHHHHH-H----HHHHHHHHHTSS----------SHHHHHHHHHHHHHHHTTC-CCHHH
T ss_pred             ---hHH-HHHHhhcCeeEeeecchhHH-H----HHHHHHhhhccC----------cchhheeeEEEEcchhhhc-CCHHH
Confidence               322 34444443321   111101 1    135555555431          1233455666666666432 68876


Q ss_pred             HHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhh
Q 008257          353 IALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLE  391 (572)
Q Consensus       353 ~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~  391 (572)
                      ...+. -..+|-|-+....-.+|++|+.|..|+..|-.-
T Consensus       288 ~~~f~-~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~  325 (986)
T 2iw3_A          288 IAPFL-GKLLPGLKSNFATIADPEAREVTLRALKTLRRV  325 (986)
T ss_dssp             HHHHH-TTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHH
T ss_pred             Hhhhh-hhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHh
Confidence            65543 245666666555555899999999999888543

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.20  E-value=0.0057  Score=59.73  Aligned_cols=155  Identities=13%  Similarity=0.142  Sum_probs=108.4

Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHhcc-CcchhH-HHHhhhHHHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHH-H
Q 008257           39 QPLLTQILEGPQETKLSLAAFLGDLAL-NSDVKV-LVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLI-H  115 (572)
Q Consensus        39 ~~Lv~~L~~~~~~~~~~aa~~L~~l~~-~~~~k~-~i~~~g~~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv-~  115 (572)
                      ..++..|.+++.+.++.+.--|..+.. +..--. .|...|...|+++...++...|..+++||.+|..+......++ +
T Consensus       121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~  200 (339)
T 3dad_A          121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAH  200 (339)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHC
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCC
Confidence            445677778888888888888887443 444444 4444555999999999999999999999999998877777777 5


Q ss_pred             cCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhh---hHHHHHHHHh---cCChhHH
Q 008257          116 AGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSED---IVHNLLHLIS---NTGPTIE  189 (572)
Q Consensus       116 ~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~---~i~~Lv~lL~---~~~~~~q  189 (572)
                      .-.|..+..++.+.     +..+.+.|..+|..++..+++.-.....+ ......+.   -...|+.+|.   +.+.++|
T Consensus       201 ~~fI~~lyslv~s~-----~~~V~k~AL~LL~v~V~~se~~~~lv~~a-v~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq  274 (339)
T 3dad_A          201 SDTIQWLYTLCASL-----SRLVVKTALKLLLVFVEYSENNAPLFIRA-VNSVASTTGAPPWANLVSILEEKNGADPELL  274 (339)
T ss_dssp             HHHHHHHHHGGGCS-----CHHHHHHHHHHHHHHHHHCGGGHHHHHHH-HHHHHHHHCCCTTHHHHHHHTTTTSCCHHHH
T ss_pred             HHHHHHHHHHHcCc-----cHHHHHHHHHHHHHHHccCcccchHHHHH-HHHhhhccCCCcHHHHHHHHhccCCCCHHHH
Confidence            66788888888753     37888899999999988654211100000 00000011   2668999997   7889999


Q ss_pred             HHHHHHHHHc
Q 008257          190 CKLLQVLVGL  199 (572)
Q Consensus       190 ~~a~~aL~~l  199 (572)
                      .++...+-.+
T Consensus       275 ~~amtLIN~l  284 (339)
T 3dad_A          275 VYTVTLINKT  284 (339)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9887655443

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=97.16  E-value=0.56  Score=53.65  Aligned_cols=350  Identities=9%  Similarity=0.042  Sum_probs=172.9

Q ss_pred             HHHHHHHHHHhhccC-cchHHHHHHcCCcHHHHHHHc-----cCCHHHHHHHHHHHHHhccCcchhHHHHhhhH-HHHH-
Q 008257           11 TVEKAEKTLANLEKC-ENNVRQMAENGRLQPLLTQIL-----EGPQETKLSLAAFLGDLALNSDVKVLVARTVG-SCLI-   82 (572)
Q Consensus        11 ~~~~A~~~L~~L~~~-~~n~~~i~~~g~i~~Lv~~L~-----~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~Lv-   82 (572)
                      +...+.++|..+... ++..... -...++..+..+.     ...+.+...+...+..++.....+..+..... +.|+ 
T Consensus       262 vk~~~~~~l~~l~~~~~~~f~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~  340 (960)
T 1wa5_C          262 VKSSIQELVQLYTTRYEDVFGPM-INEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITE  340 (960)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHH-HHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHH
Confidence            455666777766542 2111100 1122334444443     33466777888888777654333322211111 3333 


Q ss_pred             ----Hhcc---------cCC--------------HHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHH----HhccCC
Q 008257           83 ----NIMK---------SGN--------------MQAREAALKALNQISSCEPSAKVLIHAGILPPLVKD----LFTVGS  131 (572)
Q Consensus        83 ----~lL~---------s~~--------------~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~l----L~s~~~  131 (572)
                          ..|.         .++              ...+..|..+|..|+..-.  +.+     +|+++.+    +.....
T Consensus       341 ~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~--~~v-----~~~~l~~i~~~l~~~~~  413 (960)
T 1wa5_C          341 QIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE--VLV-----TNIFLAHMKGFVDQYMS  413 (960)
T ss_dssp             HTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH--HHH-----HHHHHHHHHHHHHHHHC
T ss_pred             HHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc--hhH-----HHHHHHHHHHHHHHhcc
Confidence                2321         011              1246677888888876433  222     3444443    431100


Q ss_pred             C-CCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhh-HHHHHHHHhcC---ChhHHHHHHHHHHHccCCCCcc
Q 008257          132 N-HLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDI-VHNLLHLISNT---GPTIECKLLQVLVGLTSSPTTV  206 (572)
Q Consensus       132 ~-~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~-i~~Lv~lL~~~---~~~~q~~a~~aL~~l~~~~~~~  206 (572)
                      + +.+-..|+.|..+++.++........ .+......+.-... +..++..|.++   .+.++..++++|..++..-.  
T Consensus       414 ~~~~~w~~reaal~algaia~~~~~~~~-~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~--  490 (960)
T 1wa5_C          414 DPSKNWKFKDLYIYLFTALAINGNITNA-GVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT--  490 (960)
T ss_dssp             ----CHHHHHHHHHHHHHHHBSSCCBTT-BCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC--
T ss_pred             CcchhHHHHHHHHHHHHHHHHHhccccC-CcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC--
Confidence            0 01235788899999999864221110 00000000011111 22334445666   78899999999999987532  


Q ss_pred             HHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC------hhH-HHHHhcc-cCChhhHHhhhccCC----
Q 008257          207 LSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMG------HEL-ADALRGA-VGQLGSLIRVISENV----  274 (572)
Q Consensus       207 ~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~------~~~-~~~i~~~-~g~l~~Lv~lL~~~~----  274 (572)
                      .+..     ...++.++..|.+++..|+..|+.+|.+++....      .+. .+.+... +..++.|+.++....    
T Consensus       491 ~~~l-----~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~  565 (960)
T 1wa5_C          491 KAQL-----IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPE  565 (960)
T ss_dssp             HHHH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHH
T ss_pred             HHHH-----HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCC
Confidence            1211     3367888888888889999999999999886311      010 0112110 135666777777641    


Q ss_pred             ---CChHHHHHHHHH-HhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCCh
Q 008257          275 ---GISKEQAAAVGL-LAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEP  350 (572)
Q Consensus       275 ---~~~~~~~~A~~~-L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~  350 (572)
                         +. +.-..|+.. +..+...-.....     ..++.|...+......     ..+..+...+..+|..+...  .++
T Consensus       566 ~~~~~-e~l~~al~~vv~~~~~~~~p~~~-----~l~~~L~~~l~~~~~~-----~~~~~~~~~~~e~l~~l~~~--~~~  632 (960)
T 1wa5_C          566 KLAEN-EFLMRSIFRVLQTSEDSIQPLFP-----QLLAQFIEIVTIMAKN-----PSNPRFTHYTFESIGAILNY--TQR  632 (960)
T ss_dssp             HHTSC-HHHHHHHHHHHHHHTTTTGGGHH-----HHHHHHHHHHHHHTTS-----CCCHHHHHHHHHHHHHHHHT--SCG
T ss_pred             ccccc-HHHHHHHHHHHHHHHHhhhhHHH-----HHHHHHHHHHHHHHhC-----CCCcHHHHHHHHHHHHHHhc--CCc
Confidence               11 222222222 2222111011111     2345566665542111     12333444455555555432  245


Q ss_pred             HHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhh
Q 008257          351 DAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLE  391 (572)
Q Consensus       351 ~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~  391 (572)
                      +....+ ...++|++...|... .......+...+..+...
T Consensus       633 ~~~~~~-~~~~~p~~~~iL~~~-~~~~~~~~~~i~~~l~~~  671 (960)
T 1wa5_C          633 QNLPLL-VDSMMPTFLTVFSED-IQEFIPYVFQIIAFVVEQ  671 (960)
T ss_dssp             GGHHHH-HHHHHHHHHHHHHTT-CTTTHHHHHHHHHHHHHH
T ss_pred             chHHHH-HHHHHHHHHHHHHhh-hHhhHHHHHHHHHHHHHh
Confidence            544433 345779999999876 455666666666666543

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=97.15  E-value=0.52  Score=53.83  Aligned_cols=194  Identities=11%  Similarity=0.004  Sum_probs=105.8

Q ss_pred             CCcHHHHHHHc-cCCHHHHHHHHHHHHHhcc------CcchhHHHHhhhHHHHHHhccc---CCHHHHHHHHHHHHHhhc
Q 008257           36 GRLQPLLTQIL-EGPQETKLSLAAFLGDLAL------NSDVKVLVARTVGSCLINIMKS---GNMQAREAALKALNQISS  105 (572)
Q Consensus        36 g~i~~Lv~~L~-~~~~~~~~~aa~~L~~l~~------~~~~k~~i~~~g~~~Lv~lL~s---~~~~~~~~A~~aL~~Ls~  105 (572)
                      ++...+..+|. +.+..+|..|+..|.+...      .++.|..|.    ..|++++..   +...++.....++..++.
T Consensus        57 ~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir----~~ll~~l~~~~~~~~~ir~kl~~~la~i~~  132 (963)
T 2x19_B           57 QAWHFSWQLLQPDKVPEIQYFGASALHIKISRYWSDIPTDQYESLK----AQLFTQITRFASGSKIVLTRLCVALASLAL  132 (963)
T ss_dssp             THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHHH----HHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCHHhCCHHHHHHHH----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            33445555664 4567899999999988643      223343333    444444433   457889999999999987


Q ss_pred             C--CCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCC---ccccch--hhhHHHHH
Q 008257          106 C--EPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPD---NQTLVS--EDIVHNLL  178 (572)
Q Consensus       106 ~--~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~---~~~l~~--~~~i~~Lv  178 (572)
                      .  ++.+.     +.++-|+..+++......+....+.+..+|..++..-.+.+. ..+..   ...+..  ..+++.+.
T Consensus       133 ~~~p~~Wp-----~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~-~~~~r~~~~~~l~~~~~~i~~ll~  206 (963)
T 2x19_B          133 SMMPDAWP-----CAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRL-PQYRKGLVRTSLAVECGAVFPLLE  206 (963)
T ss_dssp             HHTTTTST-----THHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC----------CCSGGGHHHHHHHHH
T ss_pred             HhCccccc-----hHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccC-cHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4  55553     567888888864100000245678888888888742111110 00000   011111  22333344


Q ss_pred             HHHhcCC--hhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 008257          179 HLISNTG--PTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPH  247 (572)
Q Consensus       179 ~lL~~~~--~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~  247 (572)
                      .++....  ..+...+++++.......... .     .....++.++.++.  +++++..|+.++..+...
T Consensus       207 ~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~-~-----~~~~ll~~l~~~l~--~~~~~~~a~~~l~~i~~~  269 (963)
T 2x19_B          207 QLLQQPSSPSCVRQKVLKCFSSWVQLEVPL-Q-----DCEALIQAAFAALQ--DSELFDSSVEAIVNAISQ  269 (963)
T ss_dssp             HHHSCTTCCHHHHHHHHHHHHHHHTSSCCG-G-----GTHHHHHHHHHHTT--STTTHHHHHHHHHHHHTC
T ss_pred             HHHhCCCCchHHHHHHHHHHHHHHcCCCCc-c-----cchHHHHHHHHHhC--CchHHHHHHHHHHHHHcc
Confidence            4443322  247777777776544322110 0     01223566666663  566889999998888753

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=97.00  E-value=0.45  Score=54.64  Aligned_cols=221  Identities=14%  Similarity=0.163  Sum_probs=127.5

Q ss_pred             cHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhH-HHHHHhcc-cCCHHHHHHHHHHHHHhhcC-----CCcH
Q 008257           38 LQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVG-SCLINIMK-SGNMQAREAALKALNQISSC-----EPSA  110 (572)
Q Consensus        38 i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~Lv~lL~-s~~~~~~~~A~~aL~~Ls~~-----~~~~  110 (572)
                      ++.++..+-+++.+.|..|-..|..+-.++         ++ +.+..+|. +.++.+|..|+..|.+....     ++..
T Consensus        18 Le~av~~ly~p~~~~r~~A~~~L~~~q~sp---------~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W~~L~~e~   88 (1023)
T 4hat_C           18 LDQVVSTFYQGSGVQQKQAQEILTKFQDNP---------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDH   88 (1023)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHHHCT---------TGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHHGGGSCHHH
T ss_pred             HHHHHHHHhCCChHHHHHHHHHHHHHHcCc---------cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcCCHHH
Confidence            344555555666566666666666443332         23 44455554 56789999999999987752     3333


Q ss_pred             HHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcC--CCCCccccCCCccccchhhhHHHHHHHHhcCChhH
Q 008257          111 KVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSG--HDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTI  188 (572)
Q Consensus       111 ~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~--~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~  188 (572)
                      +.-++...+..+.+.-..+..-..+.-++.+.+.+++.++...  ..|.              +.++.++.+++++ +..
T Consensus        89 ~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp--------------~~l~dL~~~l~~~-~~~  153 (1023)
T 4hat_C           89 RIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWP--------------EFIPELIGSSSSS-VNV  153 (1023)
T ss_dssp             HHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCT--------------THHHHHHHHTTTC-HHH
T ss_pred             HHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhch--------------HHHHHHHHHhcCC-HHH
Confidence            4445555666665543211000001456777899999998754  4453              4688888888643 344


Q ss_pred             HHHHHHHHHHccCC-------CCc---cHHHHHHHHhcCChHHHHH----HhcC-CCHHHHHHHHHHHHHcCCCCChhHH
Q 008257          189 ECKLLQVLVGLTSS-------PTT---VLSVVSAIKSSGATISLVQ----FVEA-PQNDLRLASIELIQNLSPHMGHELA  253 (572)
Q Consensus       189 q~~a~~aL~~l~~~-------~~~---~~~~~~~i~~~g~i~~Lv~----lL~~-~~~~v~~~a~~~L~~Ls~~~~~~~~  253 (572)
                      ....++.|..+...       .-.   ...++..+.+.  ++.++.    .|.. .++++...+++++......-+-.  
T Consensus       154 ~~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~--~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~--  229 (1023)
T 4hat_C          154 CENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKE--FEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYR--  229 (1023)
T ss_dssp             HHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTH--
T ss_pred             HHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHH--
Confidence            45555555543221       111   11233344443  444444    4433 45677888888888877664322  


Q ss_pred             HHHhcccCChhhHH-hhhccCCCChHHHHHHHHHHhcCCC
Q 008257          254 DALRGAVGQLGSLI-RVISENVGISKEQAAAVGLLAELPE  292 (572)
Q Consensus       254 ~~i~~~~g~l~~Lv-~lL~~~~~~~~~~~~A~~~L~~L~~  292 (572)
                       .+... ..++.+. .+|.+    ++.+..|+.+|..+..
T Consensus       230 -~i~~~-~ll~~l~~~~L~~----~~~r~~A~ecL~eIv~  263 (1023)
T 4hat_C          230 -YIYET-NILELLSTKFMTS----PDTRAITLKCLTEVSN  263 (1023)
T ss_dssp             -HHHSS-SHHHHHHTHHHHS----HHHHHHHHHHHHHHHT
T ss_pred             -Hhcch-hHHHHHHHHHcCC----HHHHHHHHHHHHHHHc
Confidence             34444 6788888 77743    2678888888777654

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=96.53  E-value=1.7  Score=50.10  Aligned_cols=216  Identities=14%  Similarity=0.138  Sum_probs=113.8

Q ss_pred             HHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhH-HHHHHhcc-cCCHHHHHHHHHHHHHhhcC-----CCcHHHHH
Q 008257           42 LTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVG-SCLINIMK-SGNMQAREAALKALNQISSC-----EPSAKVLI  114 (572)
Q Consensus        42 v~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~Lv~lL~-s~~~~~~~~A~~aL~~Ls~~-----~~~~~~iv  114 (572)
                      +..+.+++...|..|-..|..+..++         +. ..+..+|. +.++.+|..|+..|.+....     ++..+.-+
T Consensus        22 l~~~~~p~~~~r~~Ae~~L~~~~~~p---------~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~i   92 (1049)
T 3m1i_C           22 VSTFYQGSGVQQKQAQEILTKFQDNP---------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGI   92 (1049)
T ss_dssp             HHHHHHCCHHHHHHHHHHHHHHHHST---------TGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHH
T ss_pred             HHHHhCCChHHHHHHHHHHHHHHhCc---------hHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHH
Confidence            33334455556666666676543332         23 55555564 46788999999999997642     22222333


Q ss_pred             HcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhc--CCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHH
Q 008257          115 HAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNS--GHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKL  192 (572)
Q Consensus       115 ~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~--~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a  192 (572)
                      +...+..+...-.....-.....++...+.+++.++..  ...|.              +.++.|+.+++ .++..+..+
T Consensus        93 r~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp--------------~ll~~L~~~~~-~~~~~~~~~  157 (1049)
T 3m1i_C           93 RNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWP--------------EFIPELIGSSS-SSVNVCENN  157 (1049)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCT--------------THHHHHHHHHT-TCHHHHHHH
T ss_pred             HHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccch--------------HHHHHHHHHHc-cChHHHHHH
Confidence            43344444332210000000146788899999999876  23343              47889999986 455556666


Q ss_pred             HHHHHHccCC-----CC--cc---HHHHHHHHhcCChHHH----HHHhcC-CCHHHHHHHHHHHHHcCCCCChhHHHHHh
Q 008257          193 LQVLVGLTSS-----PT--TV---LSVVSAIKSSGATISL----VQFVEA-PQNDLRLASIELIQNLSPHMGHELADALR  257 (572)
Q Consensus       193 ~~aL~~l~~~-----~~--~~---~~~~~~i~~~g~i~~L----v~lL~~-~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~  257 (572)
                      +.+|..++..     ..  ..   ...+..+.+.  ++.+    ...++. .+..++..+++++.......+..   .+.
T Consensus       158 l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~--~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~---~~~  232 (1049)
T 3m1i_C          158 MIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKE--FEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYR---YIY  232 (1049)
T ss_dssp             HHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTH---HHH
T ss_pred             HHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHH---HHh
Confidence            6666665521     10  00   0112333332  3333    444443 35678899999887766543322   122


Q ss_pred             cccCChhhHHhhhccCCCChHHHHHHHHHHhcC
Q 008257          258 GAVGQLGSLIRVISENVGISKEQAAAVGLLAEL  290 (572)
Q Consensus       258 ~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L  290 (572)
                      .. ..++.+.+.+.. +  ++.+..|+.+|..+
T Consensus       233 ~~-~ll~~l~~~~l~-~--~~~~~~a~~~L~~i  261 (1049)
T 3m1i_C          233 ET-NILELLSTKFMT-S--PDTRAITLKCLTEV  261 (1049)
T ss_dssp             SS-SHHHHHHTHHHH-S--HHHHHHHHHHHHHH
T ss_pred             hh-hHHHHHHHHhCC-C--HhHHHHHHHHHHHH
Confidence            22 444444422211 2  25555666655444

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=95.97  E-value=3.1  Score=47.39  Aligned_cols=129  Identities=9%  Similarity=0.002  Sum_probs=70.4

Q ss_pred             CHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHc-cCCHHHHHHHHHHHHHhcc------CcchhHHHHhhhHHH
Q 008257            8 NLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQIL-EGPQETKLSLAAFLGDLAL------NSDVKVLVARTVGSC   80 (572)
Q Consensus         8 ~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~-~~~~~~~~~aa~~L~~l~~------~~~~k~~i~~~g~~~   80 (572)
                      |+..+..|...|..+..+++...         .+..+|. +.+..+|..|+..|.+...      .++.|..+.+.-.+.
T Consensus        20 d~~~r~~A~~~L~~~~~~p~~w~---------~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~   90 (971)
T 2x1g_F           20 NSQNQAITHEWLTDAEASPQAWQ---------FSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKILES   90 (971)
T ss_dssp             TTTC----CHHHHHTTTSTHHHH---------HHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCHHHHH---------HHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHHHHH
Confidence            44445555566655555443332         3445554 3567889999999988643      223343333222233


Q ss_pred             HHHhcccCCHHHHHHHHHHHHHhhcCCC-cHHHHHHcCChHHHHHHHhccCCCC-CCcchHHHHHHHHHHHHh
Q 008257           81 LINIMKSGNMQAREAALKALNQISSCEP-SAKVLIHAGILPPLVKDLFTVGSNH-LPMRLKEVSATILANVVN  151 (572)
Q Consensus        81 Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~-~~~~iv~~G~i~~Lv~lL~s~~~~~-~~~~~~~~aa~~L~nla~  151 (572)
                      +.+.- ++...++.....+|..++..+- .+     .+.++-|+..+.++..+. .++...+.+..+|..++.
T Consensus        91 l~~~~-~~~~~vr~kl~~~la~i~~~~~p~W-----p~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~E  157 (971)
T 2x1g_F           91 IVRFA-GGPKIVLNRLCISLGAYIVHMLGEW-----PGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPE  157 (971)
T ss_dssp             HHHHT-TSCHHHHHHHHHHHHHHHHHTTCC-----------HHHHHHHHTC----CHHHHHHHHHHHHHHHHH
T ss_pred             HHHhC-CCCHHHHHHHHHHHHHHHHHccccc-----cHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHH
Confidence            33332 2357889999999999987422 44     346788888887531000 014577888888888874

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=95.75  E-value=0.035  Score=52.36  Aligned_cols=170  Identities=11%  Similarity=0.024  Sum_probs=88.4

Q ss_pred             HHHhcCChhHHHHHHHH-----HHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHH-----HHcCCCC
Q 008257          179 HLISNTGPTIECKLLQV-----LVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELI-----QNLSPHM  248 (572)
Q Consensus       179 ~lL~~~~~~~q~~a~~a-----L~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L-----~~Ls~~~  248 (572)
                      .++.+++++++..++..     |..+..+++  ..+|....+.-..+.|..++.+++..||..++..+     ..|..+.
T Consensus        57 ~ll~d~~~~VR~~AA~~l~~~~l~~L~~D~~--~~VR~~aA~~L~~~~L~~ll~D~d~~VR~~aA~~l~~~~L~~L~~D~  134 (244)
T 1lrv_A           57 QYLADPFWERRAIAVRYSPVEALTPLIRDSD--EVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAADR  134 (244)
T ss_dssp             GGTTCSSHHHHHHHHTTSCGGGGGGGTTCSS--HHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHHSCTGGGGGGTTCS
T ss_pred             HHhcCCCHHHHHHHHHhCCHHHHHHHccCcC--HHHHHHHHHHCCHHHHHHHHcCCCHHHHHHHHHhCCHHHHHHHHcCC
Confidence            45567788888888753     444555554  46777777666667777888888888888877532     2233333


Q ss_pred             ChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcch
Q 008257          249 GHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFV  328 (572)
Q Consensus       249 ~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~  328 (572)
                      ...++..+... -..+.+..++..++.  .++..+++.+.                  -+.+..++.+          .+
T Consensus       135 d~~VR~~aA~~-l~~~~l~~l~~D~d~--~VR~~aa~~l~------------------~~ll~~ll~D----------~d  183 (244)
T 1lrv_A          135 DYLVRAYVVQR-IPPGRLFRFMRDEDR--QVRKLVAKRLP------------------EESLGLMTQD----------PE  183 (244)
T ss_dssp             SHHHHHHHHHH-SCGGGGGGTTTCSCH--HHHHHHHHHSC------------------GGGGGGSTTC----------SS
T ss_pred             CHHHHHHHHHh-cCHHHHHHHHcCCCH--HHHHHHHHcCC------------------HHHHHHHHcC----------CC
Confidence            33443333222 122333334444442  66665555311                  1111122222          12


Q ss_pred             hhHHHHHHHHH-----HHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHH
Q 008257          329 TPFLEGLLSVL-----ARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATAL  385 (572)
Q Consensus       329 ~~~~e~a~~aL-----~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL  385 (572)
                      ..+...++..|     ..+..-  .++..+..+.+.-..+.|..| +++ +..|+..|+..|
T Consensus       184 ~~VR~aaa~~l~~~~L~~Ll~D--~d~~VR~~aa~~l~~~~L~~L-~D~-~~~VR~aa~~~L  241 (244)
T 1lrv_A          184 PEVRRIVASRLRGDDLLELLHD--PDWTVRLAAVEHASLEALREL-DEP-DPEVRLAIAGRL  241 (244)
T ss_dssp             HHHHHHHHHHCCGGGGGGGGGC--SSHHHHHHHHHHSCHHHHHHC-CCC-CHHHHHHHHCCC
T ss_pred             HHHHHHHHHhCCHHHHHHHHcC--CCHHHHHHHHHcCCHHHHHHc-cCC-CHHHHHHHHHHh
Confidence            23333333221     112111  355666666665556666665 666 788887776554

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=95.53  E-value=0.25  Score=47.47  Aligned_cols=188  Identities=16%  Similarity=0.149  Sum_probs=120.2

Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHhccCcc---hhHHHH-hhh-H-HHHHHhcccCCHHHHHHHHHHHHHhhcCCC----c
Q 008257           40 PLLTQILEGPQETKLSLAAFLGDLALNSD---VKVLVA-RTV-G-SCLINIMKSGNMQAREAALKALNQISSCEP----S  109 (572)
Q Consensus        40 ~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~---~k~~i~-~~g-~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~----~  109 (572)
                      ||-..|.+.+...|.++...|..+.....   ...... ..+ . +.+-..+...+..++..|+.+|..++..-.    .
T Consensus        13 pl~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~   92 (278)
T 4ffb_C           13 PLEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLK   92 (278)
T ss_dssp             CHHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CC
T ss_pred             CHHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            37789999999999999988877543211   111111 122 2 566678888899999999999998875311    1


Q ss_pred             HH--HHHHcCChHHHHHH-HhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCCh
Q 008257          110 AK--VLIHAGILPPLVKD-LFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGP  186 (572)
Q Consensus       110 ~~--~iv~~G~i~~Lv~l-L~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~  186 (572)
                      +.  ...-...+|.|+.- |.+.     ...++..|..++..++....              ....+++.++..+.+.+|
T Consensus        93 ~~~~~~~~~~~l~~lveK~l~~~-----k~~~~~~a~~~l~~~~~~~~--------------~~~~~~e~l~~~l~~Knp  153 (278)
T 4ffb_C           93 NAHNITLISTWTPLLVEKGLTSS-----RATTKTQSMSCILSLCGLDT--------------SITQSVELVIPFFEKKLP  153 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSCC-----CHHHHHHHHHHHHHHHHTSS--------------SSHHHHHHHGGGGGCSCH
T ss_pred             cchhHHHHHHHHHHHHHHHhcCc-----cHHHHHHHHHHHHHHHHhcC--------------cHHHHHHHHHHHHhccCH
Confidence            21  22234567777764 5443     36788888888888875321              113356777788888999


Q ss_pred             hHHHHHHHHHHHccCC--CCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC
Q 008257          187 TIECKLLQVLVGLTSS--PTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMG  249 (572)
Q Consensus       187 ~~q~~a~~aL~~l~~~--~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~  249 (572)
                      .++..++..|..+-..  ... ......+  ...++.+..+|.+.++.||..|..++..+-...+
T Consensus       154 kv~~~~l~~l~~~l~~fg~~~-~~~k~~l--~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G  215 (278)
T 4ffb_C          154 KLIAAAANCVYELMAAFGLTN-VNVQTFL--PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTG  215 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTT-CCHHHHH--HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC--
T ss_pred             HHHHHHHHHHHHHHHHhCCCc-CCchhHH--HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence            9998888777655321  110 0011110  1245567788899999999999999987765544

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=94.98  E-value=0.42  Score=44.56  Aligned_cols=201  Identities=14%  Similarity=0.221  Sum_probs=128.0

Q ss_pred             CHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHh-------hhccCCCC---hHHHHHHHHHHhcCCCCcHHHHH
Q 008257          230 QNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIR-------VISENVGI---SKEQAAAVGLLAELPERDLGLTR  299 (572)
Q Consensus       230 ~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~-------lL~~~~~~---~~~~~~A~~~L~~L~~~~~~~~~  299 (572)
                      +++.|+.|+.-|+.=.+ .-.+++-.+..+.|.+..|++       .+..+.=.   +.--..|+..+..++. +++.+.
T Consensus        14 ~p~~Re~AL~eLsk~Re-~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAs-hpetr~   91 (268)
T 2fv2_A           14 SPETRENALLELSKKRE-SVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVAS-HPETRS   91 (268)
T ss_dssp             STTTHHHHHHHHHHHTT-TCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHH-CTTTHH
T ss_pred             CchhHHHHHHHHHHhhh-ccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHc-Ccchhh
Confidence            34457776555544322 224554456666566655532       23222210   1233567777777776 778889


Q ss_pred             HHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHH
Q 008257          300 QMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQM  379 (572)
Q Consensus       300 ~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~  379 (572)
                      .|+++...-.|.-+|....  +   .+..+-++=..+|.++.+...  +|++....+.+..++|..+..++.+ ++..|.
T Consensus        92 ~Fl~a~iplyLyPfL~t~s--k---~r~fE~LRLtsLGVIgaLvK~--dd~eVi~fLL~tEiiplCLrime~G-selSKt  163 (268)
T 2fv2_A           92 AFLAAHIPLFLYPFLHTVS--K---TRPFEYLRLTSLGVIGALVKT--DEQEVINFLLTTEIIPLCLRIMESG-SELSKT  163 (268)
T ss_dssp             HHHHTTGGGGTHHHHHCCC--C---SHHHHHHHHHHHHHHHHHGGG--CCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHH
T ss_pred             HHHHccchHHhhhhhcccc--C---CCcchhhhhhHHHHHHHHhcc--CcHHHHHHHHhhhHHHHHHHHHhhc-cHHHHH
Confidence            9999999988888987522  1   123444555677777777766  7999999999999999999999999 999999


Q ss_pred             HHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHh-hcCCCHh
Q 008257          380 VSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIAL-LDHTNEK  458 (572)
Q Consensus       380 ~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~l-L~~~~~~  458 (572)
                      .|...+..+-.++.-+.                                .+|.-...|..+ ...+..+|.- .+.+++.
T Consensus       164 vAtfIlqKIL~dd~GL~--------------------------------YiC~t~eRF~av-~~vL~~mV~~l~~~ps~R  210 (268)
T 2fv2_A          164 VATFILQKILLDDTGLA--------------------------------YICQTYERFSHV-AMILGKMVLQLSKEPSAR  210 (268)
T ss_dssp             HHHHHHHHHHHSHHHHH--------------------------------HHTSSHHHHHHH-HHHHHHHHHHTTTSCCHH
T ss_pred             HHHHHHHHHhccchhHH--------------------------------HHHccHHHHHHH-HHHHHHHHHHHhcCCChH
Confidence            99998887755432110                                012112233211 1133344443 3567888


Q ss_pred             HHHHHHHHHHHhhhc
Q 008257          459 VVEASLAALSTVIDD  473 (572)
Q Consensus       459 v~~~A~~aL~~l~~~  473 (572)
                      ......+....|+.+
T Consensus       211 LLKhiircYlRLsdn  225 (268)
T 2fv2_A          211 LLKHVVRCYLRLSDN  225 (268)
T ss_dssp             HHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHhcC
Confidence            888888888888854

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=94.27  E-value=0.38  Score=44.87  Aligned_cols=155  Identities=19%  Similarity=0.251  Sum_probs=103.9

Q ss_pred             HHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCC-----HHHHHHHHHHHHHcCCCCChhHHHHHhcccCChh
Q 008257          190 CKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQ-----NDLRLASIELIQNLSPHMGHELADALRGAVGQLG  264 (572)
Q Consensus       190 ~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-----~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~  264 (572)
                      .+|+..|..++++++    .|..+.+++..-.|.++|+..+     +.+|-.++..++.|.+.++.++...+..+ ..+|
T Consensus        74 cnaLaLlQcvAshpe----tr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~t-Eiip  148 (268)
T 2fv2_A           74 CNALALLQCVASHPE----TRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTT-EIIP  148 (268)
T ss_dssp             HHHHHHHHHHHHCTT----THHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHT-THHH
T ss_pred             HHHHHHHHHHHcCcc----hhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhh-hHHH
Confidence            467777888998875    4888899999889999997554     36899999999999987778887787777 7999


Q ss_pred             hHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhC-CChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHh
Q 008257          265 SLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDE-GAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVT  343 (572)
Q Consensus       265 ~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~-g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~  343 (572)
                      ..++.++.+++  --+..|..++..+-.++... +.+... .-+-.+...|..--..-.  .....-+..+.+..-.+++
T Consensus       149 lCLrime~Gse--lSKtvAtfIlqKIL~dd~GL-~YiC~t~eRF~av~~vL~~mV~~l~--~~ps~RLLKhiircYlRLs  223 (268)
T 2fv2_A          149 LCLRIMESGSE--LSKTVATFILQKILLDDTGL-AYICQTYERFSHVAMILGKMVLQLS--KEPSARLLKHVVRCYLRLS  223 (268)
T ss_dssp             HHHHHHHHSCH--HHHHHHHHHHHHHHHSHHHH-HHHTSSHHHHHHHHHHHHHHHHHTT--TSCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhhccH--HHHHHHHHHHHHHhccchhH-HHHHccHHHHHHHHHHHHHHHHHHh--cCCChHHHHHHHHHHHHHh
Confidence            99999999995  67888888888876644444 334321 122222222211000000  0023345566666666666


Q ss_pred             ccCCCChHHHHHHHH
Q 008257          344 FVLSDEPDAIALCCE  358 (572)
Q Consensus       344 ~~~~~~~~~~~~i~~  358 (572)
                          +|+..++.+..
T Consensus       224 ----dn~rar~aL~~  234 (268)
T 2fv2_A          224 ----DNPRAREALRQ  234 (268)
T ss_dssp             ----TSHHHHHHHHH
T ss_pred             ----cCHHHHHHHHH
Confidence                56776666654

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=94.21  E-value=0.16  Score=47.85  Aligned_cols=35  Identities=11%  Similarity=0.038  Sum_probs=22.8

Q ss_pred             ChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHH
Q 008257          349 EPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATA  384 (572)
Q Consensus       349 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~a  384 (572)
                      ++..+..+...-..+.|..+++++ +..|+..++..
T Consensus       159 d~~VR~~aa~~l~~~ll~~ll~D~-d~~VR~aaa~~  193 (244)
T 1lrv_A          159 DRQVRKLVAKRLPEESLGLMTQDP-EPEVRRIVASR  193 (244)
T ss_dssp             CHHHHHHHHHHSCGGGGGGSTTCS-SHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHh
Confidence            445555555444445666777777 88888888765

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=93.75  E-value=12  Score=42.70  Aligned_cols=209  Identities=13%  Similarity=0.100  Sum_probs=118.4

Q ss_pred             CHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccC---CHHHHHHHHHHHHHhcc--Ccc----hhHHHHhhhH
Q 008257            8 NLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEG---PQETKLSLAAFLGDLAL--NSD----VKVLVARTVG   78 (572)
Q Consensus         8 ~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~---~~~~~~~aa~~L~~l~~--~~~----~k~~i~~~g~   78 (572)
                      |+..++.|...|..+-.+++..         .....+|..+   +..+|..++..|.+...  .++    .+..+.    
T Consensus        21 d~~~r~~A~~~L~~~q~sp~aw---------~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr----   87 (980)
T 3ibv_A           21 GPIIKQQATDFIGSLRSSSTGW---------KICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIR----   87 (980)
T ss_dssp             CHHHHHHHHHHHHHHHHSTTHH---------HHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHH----
T ss_pred             CHHHHHHHHHHHHHHHcChhHH---------HHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHH----
Confidence            6677777777777776655432         3444555543   68899999998887543  344    444443    


Q ss_pred             HHHHHhccc-----CCHHHHHHHHHHHHHhhcC--CCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHh
Q 008257           79 SCLINIMKS-----GNMQAREAALKALNQISSC--EPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVN  151 (572)
Q Consensus        79 ~~Lv~lL~s-----~~~~~~~~A~~aL~~Ls~~--~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~  151 (572)
                      ..|++++..     +...++...+.+|..+...  ++.|.     +.++-|+.++.+++   . .........+|..|..
T Consensus        88 ~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp-----~~i~~l~~~~~~~~---~-~~~~~~~LriL~~i~E  158 (980)
T 3ibv_A           88 DSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWN-----DFFASLQGVIAASS---Q-SEFSNFYLKVLLSIGD  158 (980)
T ss_dssp             HHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCT-----THHHHHHHHHHHHC---C-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCc-----hHHHHHHHHhcCCC---h-hHHHHHHHHHHHHhHH
Confidence            444444432     3456788888888888763  35543     45667777776531   1 1223333444443332


Q ss_pred             cCCCCCccccCC---Cc-----cccchh---hhHHHHHHHHh----cCChhHHHHHHHHHHHccCCCCccHHHHHHHHhc
Q 008257          152 SGHDFDSITVGP---DN-----QTLVSE---DIVHNLLHLIS----NTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSS  216 (572)
Q Consensus       152 ~~~~~~~~~~~~---~~-----~~l~~~---~~i~~Lv~lL~----~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~  216 (572)
                      .-.+.. ...+.   .+     ..+...   .+++.++.+|.    +.++++...++.+|......-.     ...+...
T Consensus       159 Ev~~~~-~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~-----~~~i~~~  232 (980)
T 3ibv_A          159 EIADSL-VLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWIN-----INLIVNE  232 (980)
T ss_dssp             HHCCCC-SCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC-----HHHHHCH
T ss_pred             HHHhcc-cccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcC-----HHhhhcc
Confidence            110100 00000   00     011111   12444444443    3677888899999988877533     2344556


Q ss_pred             CChHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 008257          217 GATISLVQFVEAPQNDLRLASIELIQNLSP  246 (572)
Q Consensus       217 g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~  246 (572)
                      .-++.+..+|..  ++++..|+.+|..+..
T Consensus       233 ~ll~~l~~~L~~--~~~r~~A~ecL~ei~~  260 (980)
T 3ibv_A          233 PCMNLLYSFLQI--EELRCAACETMTEIVN  260 (980)
T ss_dssp             HHHHHHHHHTTS--HHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHcCC--hHHHHHHHHHHHHHHH
Confidence            677788888764  7899999999988864

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=92.97  E-value=0.47  Score=45.44  Aligned_cols=154  Identities=14%  Similarity=0.078  Sum_probs=97.8

Q ss_pred             chHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhh
Q 008257          361 LAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLL  440 (572)
Q Consensus       361 ~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~  440 (572)
                      ..+.+-..+.+. +..++..+..++..++........                                   ....+...
T Consensus        56 ~~~~lkk~l~Ds-N~~v~~~al~~l~~~~~~~~~~~~-----------------------------------~~~~~~~~   99 (278)
T 4ffb_C           56 DPTLFAQYITDS-NVVAQEQAIVALNSLIDAFASSSL-----------------------------------KNAHNITL   99 (278)
T ss_dssp             CTHHHHHHTTCS-SHHHHHHHHHHHHHHHTTCC---C-----------------------------------CHHHHHHH
T ss_pred             HHHHHHHHhccc-hHHHHHHHHHHHHHHHHHhhhhhc-----------------------------------ccchhHHH
Confidence            345666778777 899999999999887642211000                                   00011111


Q ss_pred             hccchHHHHH-hhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcc
Q 008257          441 EGHAVEKLIA-LLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRT  519 (572)
Q Consensus       441 ~~g~i~~Lv~-lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~  519 (572)
                      -...++.|+. .|.++...++..|..++..++......    ..+     +..+...+ .+.++.++..++..|.+++..
T Consensus       100 ~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~----~~~-----~e~l~~~l-~~Knpkv~~~~l~~l~~~l~~  169 (278)
T 4ffb_C          100 ISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI----TQS-----VELVIPFF-EKKLPKLIAAAANCVYELMAA  169 (278)
T ss_dssp             HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS----HHH-----HHHHGGGG-GCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH----HHH-----HHHHHHHH-hccCHHHHHHHHHHHHHHHHH
Confidence            2346777885 588999999999999988877432111    111     23455566 589999999999888888743


Q ss_pred             --hhh--hhhhcCCCCchHHHHHHhhcCCchhHHHHHHHHHhhcccC
Q 008257          520 --DDI--AYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHIDKIP  562 (572)
Q Consensus       520 --~~~--~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~  562 (572)
                        ...  ......  .+...+..++.+.|+.||..|..++.-+.+.-
T Consensus       170 fg~~~~~~k~~l~--~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~  214 (278)
T 4ffb_C          170 FGLTNVNVQTFLP--ELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVT  214 (278)
T ss_dssp             HTTTTCCHHHHHH--HHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-
T ss_pred             hCCCcCCchhHHH--HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence              110  000000  12235778899999999999999998887754

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=92.34  E-value=0.74  Score=44.83  Aligned_cols=213  Identities=10%  Similarity=0.124  Sum_probs=132.7

Q ss_pred             HcCCcHHHHHHHccCCHHHHHHHHHHHHHhcc-CcchhHHHHhh-hH-HHHHH-hccc-CCHHHHHHHHHHHHHhhcCCC
Q 008257           34 ENGRLQPLLTQILEGPQETKLSLAAFLGDLAL-NSDVKVLVART-VG-SCLIN-IMKS-GNMQAREAALKALNQISSCEP  108 (572)
Q Consensus        34 ~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~-~~~~k~~i~~~-g~-~~Lv~-lL~s-~~~~~~~~A~~aL~~Ls~~~~  108 (572)
                      ..+.+..|+..|..=+-+.|..++....++.. ..+.+....+. .- |-++. +++. ++++.--.+-..|+....++.
T Consensus        76 ~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLRecir~e~  155 (341)
T 1upk_A           76 NSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEP  155 (341)
T ss_dssp             HHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHTSHH
T ss_pred             HhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHHHHHhHH
Confidence            44555555555555566666665555555433 11222111111 11 22222 2222 455666677788888888877


Q ss_pred             cHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccc--hhhhHHHHHHHHhcCCh
Q 008257          109 SAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLV--SEDIVHNLLHLISNTGP  186 (572)
Q Consensus       109 ~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~--~~~~i~~Lv~lL~~~~~  186 (572)
                      -.+.+...+.+-.+.+....++     -++-..|..++..|-.....    .+.   ..+.  -..+....-.||.+++.
T Consensus       156 la~~iL~~~~f~~fF~yv~~~~-----FdiasDAf~TfkelLt~Hk~----lva---efL~~nyd~Ff~~y~~Ll~S~NY  223 (341)
T 1upk_A          156 LAKIILWSEQFYDFFRYVEMST-----FDIASDAFATFKDLLTRHKL----LSA---EFLEQHYDRFFSEYEKLLHSENY  223 (341)
T ss_dssp             HHHHHHHSGGGGHHHHHTTCSS-----HHHHHHHHHHHHHHHHSSHH----HHH---HHHHHTHHHHHHHHHHHTTCSSH
T ss_pred             HHHHHhccHHHHHHHHHhcCCC-----chHHHHHHHHHHHHHhccHH----HHH---HHHHHhHHHHHHHHHHHhcCCcc
Confidence            7888888888888888776543     67777788877776442110    000   0011  12356667788899999


Q ss_pred             hHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcC--CCCChhHHHHHhc
Q 008257          187 TIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLS--PHMGHELADALRG  258 (572)
Q Consensus       187 ~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls--~~~~~~~~~~i~~  258 (572)
                      -.+.++++.|..+-.++.+.....+-|.+..-+..+..+|+++...+|-.|.-++.-..  .+.+.++.+.+..
T Consensus       224 VTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~  297 (341)
T 1upk_A          224 VTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLK  297 (341)
T ss_dssp             HHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHH
Confidence            99999999999998887653333334445566888899999999999999988877665  2345566555544

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=91.73  E-value=0.77  Score=43.55  Aligned_cols=109  Identities=13%  Similarity=0.156  Sum_probs=80.7

Q ss_pred             chHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhh
Q 008257          361 LAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLL  440 (572)
Q Consensus       361 ~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~  440 (572)
                      ++|.|++-+-++ .+.+|..+-..+..+..-.+                                               
T Consensus       133 ~lP~LveKlGd~-k~~vR~~~r~il~~l~~v~~-----------------------------------------------  164 (266)
T 2of3_A          133 FVPYLLLKTGEA-KDNMRTSVRDIVNVLSDVVG-----------------------------------------------  164 (266)
T ss_dssp             HHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHC-----------------------------------------------
T ss_pred             HHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHCC-----------------------------------------------
Confidence            579999888777 78888887777765542110                                               


Q ss_pred             hccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCCh---HHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 008257          441 EGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGI---KPILDVLLEKRTENLQRRAVWVVERIL  517 (572)
Q Consensus       441 ~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i---~~L~~lL~~~~~~~~~~~a~~~l~~l~  517 (572)
                      -....+.+++-+.+.|.++++..+..+..+....     |..   ...++   +.+..++ +++|..+|..|..++..++
T Consensus       165 ~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~-----G~~---~~~~l~~~~~ia~ll-~D~d~~VR~aAl~~lve~y  235 (266)
T 2of3_A          165 PLKMTPMLLDALKSKNARQRSECLLVIEYYITNA-----GIS---PLKSLSVEKTVAPFV-GDKDVNVRNAAINVLVACF  235 (266)
T ss_dssp             HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH-----CSG---GGGGGCHHHHHGGGG-GCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc-----CCC---ccccccchHHHHHHH-cCCCHHHHHHHHHHHHHHH
Confidence            1125566778889999999999999999887532     211   24578   9999999 6999999999999999888


Q ss_pred             cc--hhhhhhh
Q 008257          518 RT--DDIAYEV  526 (572)
Q Consensus       518 ~~--~~~~~~~  526 (572)
                      .+  +.....+
T Consensus       236 ~~~Gd~v~k~l  246 (266)
T 2of3_A          236 KFEGDQMWKAA  246 (266)
T ss_dssp             HHHTTHHHHHH
T ss_pred             HHhhHHHHHHH
Confidence            66  4555444

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=91.62  E-value=2.9  Score=39.59  Aligned_cols=183  Identities=14%  Similarity=0.103  Sum_probs=114.4

Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhHHHHHHhc----ccCCHHHHHHHHHHHHHhhc---CCCcHH
Q 008257           39 QPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIM----KSGNMQAREAALKALNQISS---CEPSAK  111 (572)
Q Consensus        39 ~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~~~Lv~lL----~s~~~~~~~~A~~aL~~Ls~---~~~~~~  111 (572)
                      +.+...|-+.+...+..+...|......  +...+... ...+++++    .+.+..+...++..|..+..   ..+++-
T Consensus        49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~--~~~~~~~~-lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~  125 (266)
T 2of3_A           49 VSLMSQLFHKDFKQHLAALDSLVRLADT--SPRSLLSN-SDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPM  125 (266)
T ss_dssp             HHHHHHHTCSCHHHHHHHHHHHHHHHHH--CHHHHHHT-HHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhhh--ChHHHHHH-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccc
Confidence            4555666666777677777777653321  22222111 12233333    36688888888888877642   222211


Q ss_pred             HHHH-cCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHH
Q 008257          112 VLIH-AGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIEC  190 (572)
Q Consensus       112 ~iv~-~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~  190 (572)
                      .-.+ .-.+|.|+.-+...     ...+|+.+-.++..+...               .-...+.+.++.-+++.+...+.
T Consensus       126 ~~~ea~~~lP~LveKlGd~-----k~~vR~~~r~il~~l~~v---------------~~~~~v~~~l~~g~ksKN~R~R~  185 (266)
T 2of3_A          126 SQEEVSAFVPYLLLKTGEA-----KDNMRTSVRDIVNVLSDV---------------VGPLKMTPMLLDALKSKNARQRS  185 (266)
T ss_dssp             CHHHHHHHHHHHHHGGGCS-----SHHHHHHHHHHHHHHHHH---------------HCHHHHHHHHHHGGGCSCHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCC-----hHHHHHHHHHHHHHHHHH---------------CCHHHHHHHHHHHHccCCHHHHH
Confidence            1111 23678888877532     367888888888777642               12244678888888888999998


Q ss_pred             HHHHHHHHccCCCCccHHHHHHHHhcCCh---HHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhH
Q 008257          191 KLLQVLVGLTSSPTTVLSVVSAIKSSGAT---ISLVQFVEAPQNDLRLASIELIQNLSPHMGHEL  252 (572)
Q Consensus       191 ~a~~aL~~l~~~~~~~~~~~~~i~~~g~i---~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~  252 (572)
                      .++..+..+-.....  .      ...++   +.+..++.+.|..||..|..++..+-.+.++.+
T Consensus       186 e~l~~l~~li~~~G~--~------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v  242 (266)
T 2of3_A          186 ECLLVIEYYITNAGI--S------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQM  242 (266)
T ss_dssp             HHHHHHHHHHHHHCS--G------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHH
T ss_pred             HHHHHHHHHHHhcCC--C------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHH
Confidence            888777766432111  0      13478   999999999999999999988876544434444

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=89.63  E-value=1.9  Score=45.06  Aligned_cols=206  Identities=15%  Similarity=0.112  Sum_probs=121.6

Q ss_pred             cchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHh--------c--CChhHHHHHHHHHHHccCCCCc
Q 008257          136 MRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLIS--------N--TGPTIECKLLQVLVGLTSSPTT  205 (572)
Q Consensus       136 ~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~--------~--~~~~~q~~a~~aL~~l~~~~~~  205 (572)
                      =++|.-||-.|..+.+......... +     -......-+|+-+|.        +  ---+|++.++.+|..+ ..-..
T Consensus       188 WEiRHGAALGLREILR~hG~GAGR~-~-----~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp~  260 (800)
T 3oc3_A          188 WYKRHGAFLAFAAMFSEIDNGGDIQ-I-----RVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLIG  260 (800)
T ss_dssp             HHHHHHHHHHHHHHHHHCC----CC-C-----CCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTSC
T ss_pred             hhhhhHHHHHHHHHHHHhccCCcee-c-----cccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-HhCCh
Confidence            4677778888887765432100000 0     011134444444442        1  1236899999999988 54322


Q ss_pred             cHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHH
Q 008257          206 VLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVG  285 (572)
Q Consensus       206 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~  285 (572)
                        +       ...+..|+..+..+.-++|-.++-.|+++.+--.     .+.   +.++.++.-|...++  +++..|+.
T Consensus       261 --e-------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~-----~Ld---~Vv~aVL~GL~D~DD--DVRAVAAe  321 (800)
T 3oc3_A          261 --P-------NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVE-----DKD---GLCRKLVSLLSSPDE--DIKLLSAE  321 (800)
T ss_dssp             --S-------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCC-----CHH---HHHHHHHHHTTCSSH--HHHHHHHH
T ss_pred             --h-------HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHH-----HHH---HHHHHHHhhcCCccc--HHHHHHHH
Confidence              1       4456666666677778999999999999921111     122   567888888888886  99999999


Q ss_pred             HHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHH
Q 008257          286 LLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALF  365 (572)
Q Consensus       286 ~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L  365 (572)
                      +|.-++. .... .     ..+..+..+|.+..  ..  +....+++ ..+++|+.+......+         ...+|.|
T Consensus       322 tLiPIA~-p~~l-~-----~LL~iLWd~L~~LD--DL--SASTgSVM-dLLAkL~s~p~~a~~d---------p~LVPRL  380 (800)
T 3oc3_A          322 LLCHFPI-TDSL-D-----LVLEKCWKNIESEE--LI--SVSKTSNL-SLLTKIYRENPELSIP---------PERLKDI  380 (800)
T ss_dssp             HHTTSCC-SSTH-H-----HHHHHHHHHHHTCC--SC--CTTHHHHH-HHHHHHHHHCTTCCCC---------SGGGGGT
T ss_pred             Hhhhhcc-hhhH-H-----HHHHHHHHHhhhhc--cc--chhhHHHH-HHHHHHHcCCcccccC---------hHHHHHH
Confidence            9998882 2222 1     22345555665421  11  11122333 2444454443211112         2678999


Q ss_pred             HHHhccCCcHHHHHHHHHHHHHhh
Q 008257          366 IELLQSNGLDKVQMVSATALENLS  389 (572)
Q Consensus       366 v~lL~~~~~~~vk~~Aa~aL~~ls  389 (572)
                      .-+|+++ -..||..+..+|..+.
T Consensus       381 ~PFLRHt-ITSVR~AVL~TL~tfL  403 (800)
T 3oc3_A          381 FPCFTSP-VPEVRTSILNMVKNLS  403 (800)
T ss_dssp             GGGGTCS-SHHHHHHHHHHTTTCC
T ss_pred             HhhhcCC-cHHHHHHHHHHHHHHH
Confidence            9999998 8889988888876654

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=89.61  E-value=31  Score=38.89  Aligned_cols=462  Identities=11%  Similarity=0.077  Sum_probs=214.8

Q ss_pred             CCCHHHHHHHHHHHHhhcc------CcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccC--cchhHHHHhhh
Q 008257            6 SENLLTVEKAEKTLANLEK------CENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALN--SDVKVLVARTV   77 (572)
Q Consensus         6 s~~~~~~~~A~~~L~~L~~------~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~--~~~k~~i~~~g   77 (572)
                      +.++.++..|+..|.+.-.      .++.+..+.+. .++.+... ..++..++...+.++..++..  .+..     ..
T Consensus        69 ~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~-ll~~l~~~-~~~~~~ir~kl~~~la~i~~~~~p~~W-----p~  141 (963)
T 2x19_B           69 DKVPEIQYFGASALHIKISRYWSDIPTDQYESLKAQ-LFTQITRF-ASGSKIVLTRLCVALASLALSMMPDAW-----PC  141 (963)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHHHHH-HHHHHHHT-TTSCHHHHHHHHHHHHHHHHHHTTTTS-----TT
T ss_pred             CCchHHHHHHHHHHHHHHHhCHHhCCHHHHHHHHHH-HHHHHHHH-cCCCHHHHHHHHHHHHHHHHHhCcccc-----ch
Confidence            4566667777777766532      12223333222 33333221 124677788888888877663  2211     13


Q ss_pred             H-HHHHHhccc-----CCHHHHHHHHHHHHHhhcC---CC---cHHHHHH---cCChHHHHH----HHhccCCCCCCcch
Q 008257           78 G-SCLINIMKS-----GNMQAREAALKALNQISSC---EP---SAKVLIH---AGILPPLVK----DLFTVGSNHLPMRL  138 (572)
Q Consensus        78 ~-~~Lv~lL~s-----~~~~~~~~A~~aL~~Ls~~---~~---~~~~iv~---~G~i~~Lv~----lL~s~~~~~~~~~~  138 (572)
                      . +.|++++++     .++..++.++..|..|+..   ..   .++.-++   ...+|.++.    ++....   .+..+
T Consensus       142 ~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~---~~~~~  218 (963)
T 2x19_B          142 AVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPS---SPSCV  218 (963)
T ss_dssp             HHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTT---CCHHH
T ss_pred             HHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CchHH
Confidence            4 888888876     3666788899998888731   10   1111111   123444444    443321   11236


Q ss_pred             HHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccH--HHHHHHHh-
Q 008257          139 KEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVL--SVVSAIKS-  215 (572)
Q Consensus       139 ~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~--~~~~~i~~-  215 (572)
                      ...+..++......+.           ........++.+++.+  .+++++..++.+|..+...+....  .....+.. 
T Consensus       219 ~~~~l~~l~~wi~~~~-----------~~~~~~~ll~~l~~~l--~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~  285 (963)
T 2x19_B          219 RQKVLKCFSSWVQLEV-----------PLQDCEALIQAAFAAL--QDSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPL  285 (963)
T ss_dssp             HHHHHHHHHHHHTSSC-----------CGGGTHHHHHHHHHHT--TSTTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCC-----------CcccchHHHHHHHHHh--CCchHHHHHHHHHHHHHcccccccCHHHHHHHHHH
Confidence            6667766654433111           0112355677777776  367889999999998887543211  11111110 


Q ss_pred             -cCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHH------HHHhcccCChhhHHhhhccC-----CCChHHHHHH
Q 008257          216 -SGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELA------DALRGAVGQLGSLIRVISEN-----VGISKEQAAA  283 (572)
Q Consensus       216 -~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~------~~i~~~~g~l~~Lv~lL~~~-----~~~~~~~~~A  283 (572)
                       .+..+.+...+..++.+.....++++..+.......+.      ..+.   ..++.++.+...+     ++  ++...+
T Consensus       286 ~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~---~~l~~ll~~~~~~~~~~~~~--~v~~~~  360 (963)
T 2x19_B          286 VLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFL---ALVNMIMFCTGIPGHYPVNE--TTSSLT  360 (963)
T ss_dssp             HHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHH---HHHHHHHHHHTCSSCTTTTC--GGGGGG
T ss_pred             HHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHH---HHHHHHHHHHcCCCCCCchh--hhhhhh
Confidence             01122232333444555555555666555422111110      1111   2455555555542     21  222222


Q ss_pred             HHHHhcCCC----Cc----HHHHHHHHhCCChHHHHHHHhhh-cc-CCCC---CCcch-hh---HHHHHHHHHHHHhccC
Q 008257          284 VGLLAELPE----RD----LGLTRQMLDEGAFGLIFSRVKSI-QL-GETR---GSRFV-TP---FLEGLLSVLARVTFVL  346 (572)
Q Consensus       284 ~~~L~~L~~----~~----~~~~~~l~~~g~l~~Lv~lL~~~-~~-~~~~---~~~~~-~~---~~e~a~~aL~~l~~~~  346 (572)
                      ......++.    .+    +.....+ . ..++.|+..+-.. .. ....   ..... ..   ....+...|..++...
T Consensus       361 l~fw~~l~~~~~~~~~~~~~~~~~~~-~-~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~  438 (963)
T 2x19_B          361 LTFWYTLQDDILSFEAEKQAVYQQVY-R-PVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEML  438 (963)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHHHH-H-HHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhhhhHHHHHHH-H-HHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHc
Confidence            222222111    01    1111111 1 2333344332211 00 0000   00000 01   1112222222222110


Q ss_pred             CCChHHHHHHHHcCchHHHHHHh----ccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCcccc
Q 008257          347 SDEPDAIALCCEHNLAALFIELL----QSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITG  422 (572)
Q Consensus       347 ~~~~~~~~~i~~~g~i~~Lv~lL----~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (572)
                        ..+...     -+++.+-+.+    .+. +...++.+..+++.++......                           
T Consensus       439 --~~~~l~-----~~~~~l~~~l~~~~~~~-~w~~~eaal~al~~i~~~~~~~---------------------------  483 (963)
T 2x19_B          439 --GAELLS-----NLYDKLGRLLTSSEEPY-SWQHTEALLYGFQSIAETIDVN---------------------------  483 (963)
T ss_dssp             --THHHHH-----HHHHHHHHHHHTCCCSC-CHHHHHHHHHHHHHHTTSCCSS---------------------------
T ss_pred             --cHHHHH-----HHHHHHHHHHHhcCCCC-chHHHHHHHHHHHHHHhhcCch---------------------------
Confidence              011111     1123333444    334 6778888888888887532110                           


Q ss_pred             ccccccCccCccchhhhhhccchHHHHHhh---cCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhh
Q 008257          423 LCRLHRGLCSLKETFCLLEGHAVEKLIALL---DHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLE  499 (572)
Q Consensus       423 ~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL---~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~  499 (572)
                                        +...++.+++.|   .++++.++..++.+++.++..-.   .....+  ...++.+++.|. 
T Consensus       484 ------------------~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~---~~~~~l--~~vl~~l~~~l~-  539 (963)
T 2x19_B          484 ------------------YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLA---DHPVMI--NSVLPLVLHALG-  539 (963)
T ss_dssp             ------------------CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHH---HCHHHH--TTTHHHHHHHTT-
T ss_pred             ------------------hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHH---hCHHHH--HHHHHHHHHHhC-
Confidence                              001222333332   33578899999999999885311   111222  246677777773 


Q ss_pred             cCCHHHHHHHHHHHHHHHcchhhhhhhcCC-CCchHHHHHHhhcC--CchhHHHHHHHHHhhcc
Q 008257          500 KRTENLQRRAVWVVERILRTDDIAYEVSGD-PNVSTALVDAFQHA--DYRTRQIAERALKHIDK  560 (572)
Q Consensus       500 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~~~~~Lv~ll~~~--~~~~~~~Aa~aL~~L~~  560 (572)
                      +  +.++..|+.+|.+++.  +++..+..- ..+...|.+++.++  +.+.+..+-.++..+..
T Consensus       540 ~--~~V~~~A~~al~~l~~--~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~  599 (963)
T 2x19_B          540 N--PELSVSSVSTLKKICR--ECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLS  599 (963)
T ss_dssp             C--GGGHHHHHHHHHHHHH--HTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             C--chHHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHh
Confidence            3  7899999999999984  333333321 11223345556653  35677777777777654

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=89.29  E-value=4.7  Score=45.93  Aligned_cols=139  Identities=10%  Similarity=0.049  Sum_probs=85.0

Q ss_pred             CCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccc
Q 008257           88 GNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQT  167 (572)
Q Consensus        88 ~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~  167 (572)
                      .+-..++.|+.++..++.......    ...++.++.++..-..++..+.++..++++|+.++..-....        + 
T Consensus       476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~--------~-  542 (971)
T 2x1g_F          476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENP--------A-  542 (971)
T ss_dssp             TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-------------
T ss_pred             CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCH--------H-
Confidence            455678999999999986432211    234555665542211001247899999999999986311100        0 


Q ss_pred             cchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCC--CHHHHHHHHHHHHHcC
Q 008257          168 LVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAP--QNDLRLASIELIQNLS  245 (572)
Q Consensus       168 l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~a~~~L~~Ls  245 (572)
                       .-..+++.|+..|.   +.++..|+.++..++.....  .+...  -...+..|..++..+  +.+.+..+..++..++
T Consensus       543 -~l~~vl~~l~~~l~---~~v~~~A~~al~~l~~~~~~--~l~p~--~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~  614 (971)
T 2x1g_F          543 -YIPPAINLLVRGLN---SSMSAQATLGLKELCRDCQL--QLKPY--ADPLLNACHASLNTGRMKNSDSVRLMFSIGKLM  614 (971)
T ss_dssp             -CHHHHHHHHHHHHH---SSCHHHHHHHHHHHHHHCHH--HHHHH--HHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHhC---hHHHHHHHHHHHHHHHHHHH--hcccc--HHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHH
Confidence             12456777777773   78999999999999965321  22211  123455666777764  4678888888888876


Q ss_pred             CC
Q 008257          246 PH  247 (572)
Q Consensus       246 ~~  247 (572)
                      ..
T Consensus       615 ~~  616 (971)
T 2x1g_F          615 SL  616 (971)
T ss_dssp             HT
T ss_pred             Hh
Confidence            43

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=89.17  E-value=36  Score=38.99  Aligned_cols=108  Identities=14%  Similarity=0.109  Sum_probs=63.8

Q ss_pred             CcHHHHHHHccCCHHHHHHHHHHHHHhcc--C---cc----hh-----HHHHhh--hH-HHHHHhccc-CCHHHHHHHHH
Q 008257           37 RLQPLLTQILEGPQETKLSLAAFLGDLAL--N---SD----VK-----VLVART--VG-SCLINIMKS-GNMQAREAALK   98 (572)
Q Consensus        37 ~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~--~---~~----~k-----~~i~~~--g~-~~Lv~lL~s-~~~~~~~~A~~   98 (572)
                      .++.|+..++ ++...+..+...|..+..  .   .+    .|     ..+...  .+ +.+...|.. ++..++..+++
T Consensus       139 ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~  217 (1049)
T 3m1i_C          139 FIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLE  217 (1049)
T ss_dssp             HHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred             HHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            4677787776 454445555555555442  1   10    11     222221  22 444555543 46788999999


Q ss_pred             HHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhc
Q 008257           99 ALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNS  152 (572)
Q Consensus        99 aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~  152 (572)
                      ++.+....-+ ...+.+...++.+.+.+.+ +     +.++..|..+|..+...
T Consensus       218 ~l~~~l~wi~-~~~~~~~~ll~~l~~~~l~-~-----~~~~~~a~~~L~~i~~~  264 (1049)
T 3m1i_C          218 SLLRYLHWIP-YRYIYETNILELLSTKFMT-S-----PDTRAITLKCLTEVSNL  264 (1049)
T ss_dssp             HHHHHTTTSC-THHHHSSSHHHHHHTHHHH-S-----HHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhhCC-HHHHhhhhHHHHHHHHhCC-C-----HhHHHHHHHHHHHHHhC
Confidence            9988765322 2335566667777733322 1     68899999999999875

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=87.65  E-value=7.2  Score=37.68  Aligned_cols=153  Identities=15%  Similarity=0.131  Sum_probs=85.6

Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhh-hHHHHH----Hhccc-CCHHHHHHHHHHHHHhhcCCCcHHH
Q 008257           39 QPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVART-VGSCLI----NIMKS-GNMQAREAALKALNQISSCEPSAKV  112 (572)
Q Consensus        39 ~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~-g~~~Lv----~lL~s-~~~~~~~~A~~aL~~Ls~~~~~~~~  112 (572)
                      ..+.+++ +=+.+.+.-+...|+-++.++.....+.+. .+..++    ..+.+ +.+..+.-+++++.|+-.++..++.
T Consensus       106 ~~l~kil-~WP~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~  184 (304)
T 3ebb_A          106 QILWKAI-NCPEDIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQKL  184 (304)
T ss_dssp             HHHHHHH-TSCTTTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHH
T ss_pred             HHHHHHH-cCCHHhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHHH
Confidence            4444544 334444444444444344454444444433 233333    33332 4567799999999999998888877


Q ss_pred             HHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHh-cCChhHHHH
Q 008257          113 LIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLIS-NTGPTIECK  191 (572)
Q Consensus       113 iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~-~~~~~~q~~  191 (572)
                      +...  ...+++.+.+... +....++..++..+.|++........  .+      ....++..+..++. ..++|...+
T Consensus       185 l~~~--~~~il~~~~~~~~-~~nknl~iA~ATl~~NlAv~~~~~~~--~~------~~~~ll~~l~~il~~~~d~EalyR  253 (304)
T 3ebb_A          185 MMSQ--RESLMSHAIELKS-GSNKNIHIALATLALNYSVCFHKDHN--IE------GKAQCLSLISTILEVVQDLEATFR  253 (304)
T ss_dssp             HHHT--HHHHHHHHHGGGS-SCCHHHHHHHHHHHHHHHHHHHHSCC--HH------HHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred             HHHH--HHHHHHHHHHHhc-CCChhHHHHHHHHHHHHHHHHhhcCC--ch------HHHHHHHHHHHHHhccCCHHHHHH
Confidence            7642  2444444432210 12378999999999999863211000  00      01113333334443 357788888


Q ss_pred             HHHHHHHccCCC
Q 008257          192 LLQVLVGLTSSP  203 (572)
Q Consensus       192 a~~aL~~l~~~~  203 (572)
                      ++.+|..+....
T Consensus       254 ~LvALGtL~~~~  265 (304)
T 3ebb_A          254 LLVALGTLISDD  265 (304)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHhCC
Confidence            888888887653

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=85.86  E-value=5.5  Score=38.75  Aligned_cols=143  Identities=10%  Similarity=0.029  Sum_probs=112.9

Q ss_pred             CCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhcc-Ccch-hHHHHhh--hH-HH
Q 008257            6 SENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLAL-NSDV-KVLVART--VG-SC   80 (572)
Q Consensus         6 s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~-~~~~-k~~i~~~--g~-~~   80 (572)
                      .++++..-.+-.+|+.....+..-+.+.+.+.+-.+..+...++=++-..|..++..+-. +... ...+...  -. ..
T Consensus       134 Ye~~diAl~~G~mLRecir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~  213 (341)
T 1upk_A          134 YESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSE  213 (341)
T ss_dssp             GGSTTTHHHHHHHHHHHHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHH
T ss_pred             hccchhHhHHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHH
Confidence            356667778888999999888888888899999999999999999998888888887643 2222 2223322  23 67


Q ss_pred             HHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHH----HcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcC
Q 008257           81 LINIMKSGNMQAREAALKALNQISSCEPSAKVLI----HAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSG  153 (572)
Q Consensus        81 Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv----~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~  153 (572)
                      .-.+|.|++-..++.+++.|+.|-.+..|...|.    +..-+..++.+|++.     +..+|..|..+.--.+.+.
T Consensus       214 y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~-----sk~Iq~EAFhVFKvFVANP  285 (341)
T 1upk_A          214 YEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-----SRNIQFEAFHVFKVFVANP  285 (341)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-----CHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc-----hhchhhhhhhheeeeeeCC
Confidence            7789999999999999999999999988865554    556688899999865     3889999999988877654

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=85.57  E-value=8.9  Score=39.22  Aligned_cols=121  Identities=14%  Similarity=0.146  Sum_probs=85.1

Q ss_pred             ccCCHHHHHHHHHHHHHhcc-CcchhHHHHhhhHHHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHH
Q 008257           46 LEGPQETKLSLAAFLGDLAL-NSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVK  124 (572)
Q Consensus        46 ~~~~~~~~~~aa~~L~~l~~-~~~~k~~i~~~g~~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~  124 (572)
                      ..|+...|+.||..+.+... .++.    .+..+..+++++..++..+|..|++.|-.++.+ ++...+     +..|++
T Consensus        38 ~kg~~k~K~LaaQ~I~kffk~FP~l----~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~ki-----aDvL~Q  107 (507)
T 3u0r_A           38 VKGGTKEKRLAAQFIPKFFKHFPEL----ADSAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPRV-----ADILTQ  107 (507)
T ss_dssp             GGSCHHHHHHHHHHHHHHGGGCGGG----HHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHHH-----HHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHhhChhh----HHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhhH-----HHHHHH
Confidence            45788999999999998766 3332    233458899999999999999999999999988 665444     457899


Q ss_pred             HHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHH
Q 008257          125 DLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLV  197 (572)
Q Consensus       125 lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~  197 (572)
                      +|.+.    . +.-....-++|..+-..                -..+.+..+...+..++..++++++..|.
T Consensus       108 lLqtd----d-~~E~~~V~~sL~sllk~----------------Dpk~tl~~lf~~i~~~~e~~Rer~lkFi~  159 (507)
T 3u0r_A          108 LLQTD----D-SAEFNLVNNALLSIFKM----------------DAKGTLGGLFSQILQGEDIVRERAIKFLS  159 (507)
T ss_dssp             HTTCC----C-HHHHHHHHHHHHHHHHH----------------CHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHhcc----c-hHHHHHHHHHHHHHHhc----------------ChHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence            99753    1 22222333444444332                22566777777777778888888887775

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=85.18  E-value=5.5  Score=38.54  Aligned_cols=117  Identities=13%  Similarity=0.076  Sum_probs=74.4

Q ss_pred             CCHHHHHHHHHHHHhhccCcchHHHHHHc--CCcHHHHHHHccCCHHHHHHHHHHHHHhccC-cchhHHHHhhhH-HHHH
Q 008257            7 ENLLTVEKAEKTLANLEKCENNVRQMAEN--GRLQPLLTQILEGPQETKLSLAAFLGDLALN-SDVKVLVARTVG-SCLI   82 (572)
Q Consensus         7 ~~~~~~~~A~~~L~~L~~~~~n~~~i~~~--g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~-~~~k~~i~~~g~-~~Lv   82 (572)
                      ..|..+..++++++||..++..+..+.+.  ..++.+...+.+.+..+|+.+|..+.|++.. ...+..-...-. ..+.
T Consensus       160 ~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~  239 (304)
T 3ebb_A          160 GKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLIS  239 (304)
T ss_dssp             SCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHH
Confidence            34667888999999999998888887753  1222333334456788999999999998762 111111001112 4445


Q ss_pred             Hhccc-CCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHH
Q 008257           83 NIMKS-GNMQAREAALKALNQISSCEPSAKVLIHAGILPPLV  123 (572)
Q Consensus        83 ~lL~s-~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv  123 (572)
                      .+++. .+.|....++-||++|...+.....+.+.=++...+
T Consensus       240 ~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v  281 (304)
T 3ebb_A          240 TILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQI  281 (304)
T ss_dssp             HHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHG
T ss_pred             HHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHH
Confidence            55543 578999999999999998765555555433333333

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=82.84  E-value=28  Score=34.74  Aligned_cols=155  Identities=13%  Similarity=0.171  Sum_probs=90.7

Q ss_pred             HhhhHHHHHHhccc-----------CCHHHHHHHHHHHHHhhcCCCcHHHHH-HcCChHHHHHHHhccCCCCCCcchHHH
Q 008257           74 ARTVGSCLINIMKS-----------GNMQAREAALKALNQISSCEPSAKVLI-HAGILPPLVKDLFTVGSNHLPMRLKEV  141 (572)
Q Consensus        74 ~~~g~~~Lv~lL~s-----------~~~~~~~~A~~aL~~Ls~~~~~~~~iv-~~G~i~~Lv~lL~s~~~~~~~~~~~~~  141 (572)
                      ...|...|++.|..           .+...+..+++||+.+..+......+. +..+|..|+..|.+..     +.++..
T Consensus       107 ~~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~-----~~~~~~  181 (383)
T 3eg5_B          107 GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAV-----PNMMID  181 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTS-----HHHHHH
T ss_pred             HHccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCc-----hHHHHH
Confidence            33344899988852           234778899999999987766666555 6788999999987643     788999


Q ss_pred             HHHHHHHHHhcCC--C-CCccccCCC--ccccchhhhHHHHHHHHhc-CChhHHHHHHHHHHHccCCCCcc---HHHHHH
Q 008257          142 SATILANVVNSGH--D-FDSITVGPD--NQTLVSEDIVHNLLHLISN-TGPTIECKLLQVLVGLTSSPTTV---LSVVSA  212 (572)
Q Consensus       142 aa~~L~nla~~~~--~-~~~~~~~~~--~~~l~~~~~i~~Lv~lL~~-~~~~~q~~a~~aL~~l~~~~~~~---~~~~~~  212 (572)
                      +..+|+-+|..+.  + +.. +++.-  -+...+..-...++..|.+ .+.+.+..+...+-.+...+...   ..+|..
T Consensus       182 aleLL~~lc~~~~~~gG~~~-VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~e  260 (383)
T 3eg5_B          182 AAKLLSALCILPQPEDMNER-VLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSE  260 (383)
T ss_dssp             HHHHHHHHHTCCSSTTHHHH-HHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcCcCCcHHH-HHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            9999999987542  1 110 00000  0000112234556777765 46667666666555555554331   123333


Q ss_pred             HHhcCChHHHHHHhcC-CCHHHHH
Q 008257          213 IKSSGATISLVQFVEA-PQNDLRL  235 (572)
Q Consensus       213 i~~~g~i~~Lv~lL~~-~~~~v~~  235 (572)
                      +...|..+ ++.-|+. .++++..
T Consensus       261 f~~~Gl~~-il~~lr~~~~~~L~~  283 (383)
T 3eg5_B          261 LMRLGLHQ-VLQELREIENEDMKV  283 (383)
T ss_dssp             HHHTTHHH-HHHHHTTSCCHHHHH
T ss_pred             HHHCChHH-HHHHHhcCCChhHHH
Confidence            43445444 4444554 3444433

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=81.22  E-value=5.7  Score=41.51  Aligned_cols=153  Identities=18%  Similarity=0.205  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHHHHhcc--CcchhHHHHhhhH-HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHH-HcCChHHHHHH
Q 008257           50 QETKLSLAAFLGDLAL--NSDVKVLVARTVG-SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLI-HAGILPPLVKD  125 (572)
Q Consensus        50 ~~~~~~aa~~L~~l~~--~~~~k~~i~~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv-~~G~i~~Lv~l  125 (572)
                      ..+|.-+|.+|+.+ .  .++       ..+ ..|+..+....=+++..++-.|..+.      +.+. -.+.+|.++.-
T Consensus       242 APVRETaAQtLGaL-~hLp~e-------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~------DLL~~Ld~Vv~aVL~G  307 (800)
T 3oc3_A          242 APVRDAAAYLLSRI-YPLIGP-------NDIIEQLVGFLDSGDWQVQFSGLIALGYLK------EFVEDKDGLCRKLVSL  307 (800)
T ss_dssp             CHHHHHHHHHHHHH-TTTSCS-------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG------GGCCCHHHHHHHHHHH
T ss_pred             eehHHHHHHHHHHH-HhCChh-------HHHHHHHHhhcCCCCeeehhhhHHHHHHHH------HHHHHHHHHHHHHHhh
Confidence            34678888888887 4  233       223 55666667777789999999999981      1111 24557777777


Q ss_pred             HhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcC-----ChhHHHHHHHHHHHcc
Q 008257          126 LFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNT-----GPTIECKLLQVLVGLT  200 (572)
Q Consensus       126 L~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~-----~~~~q~~a~~aL~~l~  200 (572)
                      |...     +.+++..||.+|.-++. .   .           .-...+..+.+.|.+.     +..--...+..|+...
T Consensus       308 L~D~-----DDDVRAVAAetLiPIA~-p---~-----------~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p  367 (800)
T 3oc3_A          308 LSSP-----DEDIKLLSAELLCHFPI-T---D-----------SLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYREN  367 (800)
T ss_dssp             TTCS-----SHHHHHHHHHHHTTSCC-S---S-----------THHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHC
T ss_pred             cCCc-----ccHHHHHHHHHhhhhcc-h---h-----------hHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCC
Confidence            7653     37999999999998871 1   1           1234566666666542     1122233444444443


Q ss_pred             CCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 008257          201 SSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLS  245 (572)
Q Consensus       201 ~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls  245 (572)
                      .....         ...-+|.|.+++++.-..||..++++|..+.
T Consensus       368 ~~a~~---------dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL  403 (800)
T 3oc3_A          368 PELSI---------PPERLKDIFPCFTSPVPEVRTSILNMVKNLS  403 (800)
T ss_dssp             TTCCC---------CSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC
T ss_pred             ccccc---------ChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Confidence            22111         2367899999999999999999999998887

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	572
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	6e-10
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	0.003
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	4e-07
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	5e-07
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-04
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	5e-05
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	1e-04
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	2e-04

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (141), Expect = 6e-10
 Identities = 54/454 (11%), Positives = 122/454 (26%), Gaps = 28/454 (6%)

Query: 40  PLLTQILEGP-QETKLSLAAFLGDLAL-NSDVKVLVARTVG-SCLINIMKSGNMQAREAA 96
           P   Q L    ++ +   A ++      +   K  V +  G   L+++++S N   ++AA
Sbjct: 5   PKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAA 64

Query: 97  LKALNQISSCEPSAKVLI-HAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHD 155
             AL  +     + K+       +   V     +        +++    +L N+ ++   
Sbjct: 65  AGALRNLVFRSTTNKLETRRQNGIREAVS----LLRRTGNAEIQKQLTGLLWNLSSTDEL 120

Query: 156 FDSITVGPDNQTL------VSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSV 209
            + +                S     N         P +       L  L+S+     ++
Sbjct: 121 KEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTM 180

Query: 210 VSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRV 269
            +      + ++ VQ   A       +    +  L        A+          +    
Sbjct: 181 RNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA 240

Query: 270 ISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKS-IQLGETRGSRFV 328
            +E          +  ++    +  L           +      +++ + L         
Sbjct: 241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDAT 300

Query: 329 TPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENL 388
                G L  L     ++S     +    E  L  +       +G   V    A+ L N+
Sbjct: 301 LEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARL--LQSGNSDVVRSGASLLSNM 358

Query: 389 SLESKN--------LTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLL 440
           S               ++  L  S    +             +  L       +      
Sbjct: 359 SRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNL--MASQPQLAKQYF 416

Query: 441 EGHAVEKLIALL-DHTNEKVVEASLAALSTVIDD 473
               +  +I L     + K  EA+   LS +   
Sbjct: 417 SSSMLNNIINLCRSSASPKAAEAARLLLSDMWSS 450

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.003
 Identities = 17/118 (14%), Positives = 38/118 (32%), Gaps = 5/118 (4%)

Query: 442 GHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKR 501
           G  + K +  L   +EK        +          +Q    + +  GI  ++D LL   
Sbjct: 1   GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQ---QVYQLGGICKLVD-LLRSP 56

Query: 502 TENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADY-RTRQIAERALKHI 558
            +N+Q+ A   +  ++         +   N     V   +       ++     L ++
Sbjct: 57  NQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNL 114

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (118), Expect = 4e-07
 Identities = 15/95 (15%), Positives = 32/95 (33%), Gaps = 1/95 (1%)

Query: 11  TVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVK 70
            VE     L  L +  +N   +     +   +  +    +  +   A  L +LA + +  
Sbjct: 435 IVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAA 494

Query: 71  VLVARTVG-SCLINIMKSGNMQAREAALKALNQIS 104
             +      + L  ++ S N      A   L ++S
Sbjct: 495 EAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (118), Expect = 5e-07
 Identities = 66/529 (12%), Positives = 152/529 (28%), Gaps = 30/529 (5%)

Query: 40  PLLTQILEGP-QETKLSLAAFLGDLALNSDVKVLVARTVG--SCLINIMK-SGNMQAREA 95
           P LT++L    Q      A  +  L+     +  + R+    S ++  M+ + +++    
Sbjct: 20  PELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARC 79

Query: 96  ALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHD 155
               L+ +S        +  +G +P LV              L     ++L   + + H+
Sbjct: 80  TAGTLHNLSHHREGLLAIFKSGGIPALV------------KMLGSPVDSVLFYAITTLHN 127

Query: 156 FDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKS 215
              +        +     +  ++ L++ T           L  L         ++ A   
Sbjct: 128 L-LLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG 186

Query: 216 SGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVG 275
             A +++++     +     + +  + ++       + +A  G       L       V 
Sbjct: 187 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEA-GGMQALGLHLTDPSQRLVQ 245

Query: 276 ISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGL------IFSRVKSIQLGETRGSRFVT 329
                   +   A   E   GL   ++                 + ++     +    V 
Sbjct: 246 NCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVC 305

Query: 330 PFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLS 389
                   V   +     ++    A+C   +L +   E   +    ++       ++ L 
Sbjct: 306 QVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLH 365

Query: 390 LESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLI 449
             S        +      A      +       + RL + L    +           +  
Sbjct: 366 PPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQ 425

Query: 450 ALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRA 509
            +     E++VE    AL  +  D        +V+     I   +  LL    EN+QR A
Sbjct: 426 FVEGVRMEEIVEGCTGALHILARD----VHNRIVIRGLNTIPLFVQ-LLYSPIENIQRVA 480

Query: 510 VWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHI 558
             V+  + +  + A E       +  L +     +      A   L  +
Sbjct: 481 AGVLCELAQDKEAA-EAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 2e-04
 Identities = 63/502 (12%), Positives = 131/502 (26%), Gaps = 81/502 (16%)

Query: 4   SKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDL 63
             + ++ T      TL NL      +  + ++G +  L+  +              L +L
Sbjct: 69  QNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNL 128

Query: 64  ALNSD---------------VKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEP 108
            L+ +               V +L    V    I       +       K +   S    
Sbjct: 129 LLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQ 188

Query: 109 SAKVLIHAGILPPLVKDLFTVGSNH--------------LPMRLKEVSATILANVVNSGH 154
           +   ++       L+     V                      L          +V +  
Sbjct: 189 ALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCL 248

Query: 155 DFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIK 214
                      +    E ++  L+ L+ +    +      +L  LT +      +V  + 
Sbjct: 249 WTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVG 308

Query: 215 SSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENV 274
              A +  V      ++    A   L    S H   E+A         L  +++++    
Sbjct: 309 GIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPS 368

Query: 275 GISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKS--------IQLGETRGSR 326
                +A                   + ++GA   +   +            +G T+   
Sbjct: 369 HWPLIKATVGL--IRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQF 426

Query: 327 FVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALE 386
                +E ++        +L+ +     +    N   LF++LL S  ++ +Q V+A  L 
Sbjct: 427 VEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYS-PIENIQRVAAGVLC 485

Query: 387 NLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVE 446
            L+ + +                                             +    A  
Sbjct: 486 ELAQDKEAAEA-----------------------------------------IEAEGATA 504

Query: 447 KLIALLDHTNEKVVEASLAALS 468
            L  LL   NE V   + A L 
Sbjct: 505 PLTELLHSRNEGVATYAAAVLF 526

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.5 bits (101), Expect = 5e-05
 Identities = 47/368 (12%), Positives = 112/368 (30%), Gaps = 27/368 (7%)

Query: 158 SITVGPDNQTLVSEDIVHNLLHLISNTG-PTIECKLLQVLVGLTSSPTTVLSVVSAIKSS 216
           S    P    ++   +V  L+  +       ++ +    L  + S  +   +    +  +
Sbjct: 105 SREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTS---AQTKVVVDA 161

Query: 217 GATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGI 276
            A    +Q +     +++  +I  + N++     +  D +         L    S     
Sbjct: 162 DAVPLFIQLLYTGSVEVKEQAIWALGNVA-GDSTDYRDYVLQCNAMEPILGLFNSNK--- 217

Query: 277 SKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLL 336
                 A   L+ L           +   A   +   +              +   E L+
Sbjct: 218 PSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY-------------SMDTETLV 264

Query: 337 SVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLT 396
                ++++     +AI    +  +    +ELL       +    A       +   +L 
Sbjct: 265 DACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHE--STLVQTPALRAVGNIVTGNDLQ 322

Query: 397 KLPELPPSGFCASIFPCFSKQPVI---TGLCRLHRGLCSLKETFCLLEGHAVEKLIALLD 453
               +      A      S +  I         +    + ++   +++ + +  L+ LL+
Sbjct: 323 TQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLE 382

Query: 454 HTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVV 513
               K  + +  A+S     G+     +  L     IKP+ D LLE     +    +  +
Sbjct: 383 VAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCD-LLEIADNRIIEVTLDAL 441

Query: 514 ERILRTDD 521
           E IL+  +
Sbjct: 442 ENILKMGE 449

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.8 bits (99), Expect = 1e-04
 Identities = 57/471 (12%), Positives = 148/471 (31%), Gaps = 66/471 (14%)

Query: 5   KSENLLTVEKAEKTLANLEKCENN--VRQMAENGRLQPLLTQILEG-PQETKLSLAAFLG 61
            S+++     A      +   E+   +  + + G +  L+  + E  P+  +L  A  L 
Sbjct: 86  NSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALT 145

Query: 62  DLALNSDVKVLVARTVGSCLIN--IMKSGNMQAREAALKALNQISSCEPSAKVLIHAGIL 119
           ++A  +  +  V     +  +   ++ +G+++ +E A+ AL  ++      +  +     
Sbjct: 146 NIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNA 205

Query: 120 PPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLH 179
              +  LF    N     L   +   L+N+          +V            +  L  
Sbjct: 206 MEPILGLF----NSNKPSLIRTATWTLSNLCRGKKPQPDWSV--------VSQALPTLAK 253

Query: 180 LISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIE 239
           LI +        L+     ++         + A+        LV+ +      ++  ++ 
Sbjct: 254 LIYSMDTET---LVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALR 310

Query: 240 LIQNLSPHMGHELADALR-GAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLT 298
            + N+      +    +  G +  L  L+    EN+     +  A   ++ +   +    
Sbjct: 311 AVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENI-----KKEACWTISNITAGNTEQI 365

Query: 299 RQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCE 358
           + ++D      +   ++  +    + +             ++  +      PD I     
Sbjct: 366 QAVIDANLIPPLVKLLEVAEYKTKKEA----------CWAISNASSGGLQRPDIIRYLVS 415

Query: 359 HNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQP 418
                   +LL+    +++  V+  ALEN+    +   +   L  +     I        
Sbjct: 416 QGCIKPLCDLLEIAD-NRIIEVTLDALENILKMGEADKEARGLNINENADFI-------- 466

Query: 419 VITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALST 469
                                 +   +EK+     + N+K+ E +   + T
Sbjct: 467 ---------------------EKAGGMEKIFNCQQNENDKIYEKAYKIIET 496

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.3 bits (95), Expect = 2e-04
 Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 6/72 (8%)

Query: 81  LINIMKSGNMQAREAALKALNQISSCE--PSAKVLIHAGILPPLVKDLFTVGSNHLPMRL 138
           ++  + S N++++  A +A  ++ S E  P    +I AG++P  V  L           +
Sbjct: 18  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFL----GKTDCSPI 73

Query: 139 KEVSATILANVV 150
           +  SA  L N+ 
Sbjct: 74  QFESAWALTNIA 85

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	572
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.77
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.76
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.69
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.68
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.57
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.43
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.18
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.01
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.0
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	98.9
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.83
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.77
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.76
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.68
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.65
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.64
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.55
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.48
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.44
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.39
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.31
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.1
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.06
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	97.99
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	96.92
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	96.76
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	93.47
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	92.21
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	90.02
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	88.73

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7e-43  Score=375.95  Aligned_cols=478  Identities=17%  Similarity=0.181  Sum_probs=402.0

Q ss_pred             CCCCCCHHHHHHHHHHHHhhccCcchHHHHHHc-CCcHHHHHHHcc-CCHHHHHHHHHHHHHhccCcchhHHHHhhhH-H
Q 008257            3 SSKSENLLTVEKAEKTLANLEKCENNVRQMAEN-GRLQPLLTQILE-GPQETKLSLAAFLGDLALNSDVKVLVARTVG-S   79 (572)
Q Consensus         3 ~~~s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~-g~i~~Lv~~L~~-~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~   79 (572)
                      +++++|+.+++.|+.+|.+|+.++..+..+++. |++++|+++|+. ++.+++..++.+|.+++.+++++..+.+.|+ |
T Consensus        25 lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~  104 (529)
T d1jdha_          25 LLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIP  104 (529)
T ss_dssp             HHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHH
T ss_pred             HHcCCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHCCCHH
Confidence            468999999999999999999988888877765 679999999975 5688999999999999999999999998888 9


Q ss_pred             HHHHhcccCCHHHHHHHHHHHHHhhcCCCc-HHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCc
Q 008257           80 CLINIMKSGNMQAREAALKALNQISSCEPS-AKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDS  158 (572)
Q Consensus        80 ~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~-~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~  158 (572)
                      +|+.+|++++++++..|+++|.+|+.+.++ ++.+.+.|+||+|+++|++.     ++.++..++++|.+++..+...  
T Consensus       105 ~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~-----~~~~~~~a~~~L~~l~~~~~~~--  177 (529)
T d1jdha_         105 ALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT-----NVKFLAITTDCLQILAYGNQES--  177 (529)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC-----CHHHHHHHHHHHHHHHTTCHHH--
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHcc-----ChHHHHHHHHHHHHHhhhhhHH--
Confidence            999999999999999999999999987665 56667999999999999864     3789999999999998754322  


Q ss_pred             cccCCCccccchhhhHHHHHHHHhc-CChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHH
Q 008257          159 ITVGPDNQTLVSEDIVHNLLHLISN-TGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLAS  237 (572)
Q Consensus       159 ~~~~~~~~~l~~~~~i~~Lv~lL~~-~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a  237 (572)
                            ...+...|+++.|+.++.. +.+.++..+++++.+++.+++    .+..+.+.|+++.|+.++.+++.+++.++
T Consensus       178 ------~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~----~~~~~~~~g~~~~L~~ll~~~~~~~~~~a  247 (529)
T d1jdha_         178 ------KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS----NKPAIVEAGGMQALGLHLTDPSQRLVQNC  247 (529)
T ss_dssp             ------HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTT----HHHHHHHTTHHHHHHTTTTSSCHHHHHHH
T ss_pred             ------HHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhcccc----ccchhhhhhhhhhHHHHhcccchhhhhhh
Confidence                  1346678899999999975 456789999999999988764    57788999999999999999999999999


Q ss_pred             HHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhh
Q 008257          238 IELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSI  317 (572)
Q Consensus       238 ~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~  317 (572)
                      +++|.+++......    .... |+++.|++++++++.  ..+..|+++|++++..+++.+..+.+.|+++.|+..+...
T Consensus       248 ~~~l~~ls~~~~~~----~~~~-~~i~~Lv~ll~~~~~--~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~  320 (529)
T d1jdha_         248 LWTLRNLSDAATKQ----EGME-GLLGTLVQLLGSDDI--NVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA  320 (529)
T ss_dssp             HHHHHHHHTTCTTC----SCCH-HHHHHHHHHTTCSCH--HHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             hhHHHhccccccch----hhhh-hcchhhhhhcccccH--HHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhh
Confidence            99999998653322    2223 789999999998885  8999999999999988888888999999999999998652


Q ss_pred             ccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCC
Q 008257          318 QLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTK  397 (572)
Q Consensus       318 ~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~  397 (572)
                      .        ..+.+++.++++|.+++.........+..+...|+++.|+.+|..+.+..++..+.+++++++.+..    
T Consensus       321 ~--------~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~~~----  388 (529)
T d1jdha_         321 G--------DREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA----  388 (529)
T ss_dssp             T--------TCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG----
T ss_pred             h--------cchhHHHHHHHHhhcccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcchhhh----
Confidence            2        2456788999999999854212234667788999999999999987456778888899999976432    


Q ss_pred             CCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCC---------------------
Q 008257          398 LPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTN---------------------  456 (572)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~---------------------  456 (572)
                                                           +...+.+.|+|+.|+++|.+.+                     
T Consensus       389 -------------------------------------~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~  431 (529)
T d1jdha_         389 -------------------------------------NHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVR  431 (529)
T ss_dssp             -------------------------------------GHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBC
T ss_pred             -------------------------------------hhhhhhhcccHHHHHHHHhcCCHHHHHHHHhhhhhHHhhcccc
Confidence                                                 1223678999999999997543                     


Q ss_pred             -HhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcchhhhhhhcCCCCchHH
Q 008257          457 -EKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTA  535 (572)
Q Consensus       457 -~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~  535 (572)
                       +++.+.+..+|+.++.+.    .....+.+.|++++|+++| .++++.++..|+++|.++..+++.++.+...+++. +
T Consensus       432 ~~~~~~~~~~al~~la~~~----~~r~~~~~~~~i~~Lv~lL-~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~~~-~  505 (529)
T d1jdha_         432 MEEIVEGCTGALHILARDV----HNRIVIRGLNTIPLFVQLL-YSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATA-P  505 (529)
T ss_dssp             HHHHHHHHHHHHHHHTTSH----HHHHHHHHTTCHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHH-H
T ss_pred             hHHHHHHHHHHHHHHccCH----HHHHHHHHCCCHHHHHHHh-CCCCHHHHHHHHHHHHHHhcChhhHHHHHHCCCHH-H
Confidence             356677788888888653    3467788999999999999 58999999999999999998888888888877775 9


Q ss_pred             HHHHhhcCCchhHHHHHHHHHhhc
Q 008257          536 LVDAFQHADYRTRQIAERALKHID  559 (572)
Q Consensus       536 Lv~ll~~~~~~~~~~Aa~aL~~L~  559 (572)
                      |+++++++++.+++.|+.+|.+|+
T Consensus       506 L~~Ll~s~n~~v~~~a~~aL~~ls  529 (529)
T d1jdha_         506 LTELLHSRNEGVATYAAAVLFRMS  529 (529)
T ss_dssp             HHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHhC
Confidence            999999999999999999999985

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-38  Score=338.80  Aligned_cols=452  Identities=14%  Similarity=0.147  Sum_probs=355.3

Q ss_pred             CCCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhcc-CcchhHHHHhhhH-HHHH
Q 008257            5 KSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLAL-NSDVKVLVARTVG-SCLI   82 (572)
Q Consensus         5 ~s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~-~~~~k~~i~~~g~-~~Lv   82 (572)
                      +++|+..++.|..+|.+|+.+++++..+++.|++++|+++|++++++++..|+++|.+++. ++..|..+.+.|+ |+|+
T Consensus        70 ~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv  149 (529)
T d1jdha_          70 NTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMV  149 (529)
T ss_dssp             HCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHhCCchhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHH
Confidence            3578899999999999999999999999999999999999999999999999999999988 4556777878888 9999


Q ss_pred             HhcccCCHHHHHHHHHHHHHhhcCCC-cHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCcccc
Q 008257           83 NIMKSGNMQAREAALKALNQISSCEP-SAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITV  161 (572)
Q Consensus        83 ~lL~s~~~~~~~~A~~aL~~Ls~~~~-~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~  161 (572)
                      ++|++++++++..++++|.+++..++ ++..+++.|++++|+.+|....    ...+++.+++++.|++.+...      
T Consensus       150 ~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~----~~~~~~~~~~~l~~ls~~~~~------  219 (529)
T d1jdha_         150 ALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT----YEKLLWTTSRVLKVLSVCSSN------  219 (529)
T ss_dssp             HGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCC----CHHHHHHHHHHHHHHTTSTTH------
T ss_pred             HHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhh----hHHHHHHHHHHHhhhhccccc------
Confidence            99999999999999999999997654 4677789999999999997642    367899999999999865432      


Q ss_pred             CCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHH
Q 008257          162 GPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELI  241 (572)
Q Consensus       162 ~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L  241 (572)
                         ...+...|+++.|+.++.+++++++.+++++|.+++.....      .....|+++.|++++++++++++..|+++|
T Consensus       220 ---~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~------~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L  290 (529)
T d1jdha_         220 ---KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK------QEGMEGLLGTLVQLLGSDDINVVTCAAGIL  290 (529)
T ss_dssp             ---HHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTT------CSCCHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             ---cchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccc------hhhhhhcchhhhhhcccccHHHHHHHHHHH
Confidence               23567789999999999999999999999999999865432      112357899999999999999999999999


Q ss_pred             HHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCc---HHHHHHHHhCCChHHHHHHHhhhc
Q 008257          242 QNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERD---LGLTRQMLDEGAFGLIFSRVKSIQ  318 (572)
Q Consensus       242 ~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~---~~~~~~l~~~g~l~~Lv~lL~~~~  318 (572)
                      ++|+.++ .+....+.+. |+++.|+.++...++..+++..|+++|.+++...   ...+..+...|+++.|+.++... 
T Consensus       291 ~~l~~~~-~~~~~~i~~~-~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~-  367 (529)
T d1jdha_         291 SNLTCNN-YKNKMMVCQV-GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPP-  367 (529)
T ss_dssp             HHHTTTC-HHHHHHHHHT-THHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTT-
T ss_pred             Hhhccch-hHHHHHHHHh-hhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhhcchhhhhhHHhcccchhHHHHHhcc-
Confidence            9999764 3334456666 8999999998654433478889999999998543   33456778899999999999752 


Q ss_pred             cCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCC
Q 008257          319 LGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKL  398 (572)
Q Consensus       319 ~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~  398 (572)
                              ....+++.++++|.+++    .+++.+..+.+.|++|.|+++|.++ ...+++.++.+............  
T Consensus       368 --------~~~~~~~~~~~~l~~l~----~~~~~~~~l~~~g~i~~L~~lL~~~-~~~~~~~~~~~~~~~~~~~~~~~--  432 (529)
T d1jdha_         368 --------SHWPLIKATVGLIRNLA----LCPANHAPLREQGAIPRLVQLLVRA-HQDTQRRTSMGGTQQQFVEGVRM--  432 (529)
T ss_dssp             --------CCHHHHHHHHHHHHHHT----TSGGGHHHHHHTTHHHHHHHHHHHH-HHHHC-----------CBTTBCH--
T ss_pred             --------chHHHHHHHHHHHhhcc----hhhhhhhhhhhcccHHHHHHHHhcC-CHHHHHHHHhhhhhHHhhcccch--
Confidence                    13456778999999998    4788889999999999999999987 77777666655332211000000  


Q ss_pred             CCCCCCCCCccccccccCCCccccccccccCc-cCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccc
Q 008257          399 PELPPSGFCASIFPCFSKQPVITGLCRLHRGL-CSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDI  477 (572)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~-~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~  477 (572)
                               ..+.         ...|...... ....+...+.+.|++++|+++|+++++.++..|+.+|++|+.++   
T Consensus       433 ---------~~~~---------~~~~~al~~la~~~~~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~---  491 (529)
T d1jdha_         433 ---------EEIV---------EGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK---  491 (529)
T ss_dssp             ---------HHHH---------HHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSH---
T ss_pred             ---------HHHH---------HHHHHHHHHHccCHHHHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCh---
Confidence                     0000         0001000000 01123344668999999999999999999999999999998764   


Q ss_pred             hhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 008257          478 EQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERI  516 (572)
Q Consensus       478 ~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l  516 (572)
                       +..+.+.+.||+++|++++ .++++.+++.|+.+|.++
T Consensus       492 -~~~~~i~~~g~~~~L~~Ll-~s~n~~v~~~a~~aL~~l  528 (529)
T d1jdha_         492 -EAAEAIEAEGATAPLTELL-HSRNEGVATYAAAVLFRM  528 (529)
T ss_dssp             -HHHHHHHHTTCHHHHHHGG-GCSSHHHHHHHHHHHHHH
T ss_pred             -hhHHHHHHCCCHHHHHHHh-CCCCHHHHHHHHHHHHHh
Confidence             4578999999999999999 699999999999999887

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.1e-35  Score=308.31  Aligned_cols=405  Identities=17%  Similarity=0.198  Sum_probs=330.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHhhccCcch--HHHHHHcCCcHHHHHHHccC-CHHHHHHHHHHHHHhcc-CcchhHHHHhhh
Q 008257            2 TSSKSENLLTVEKAEKTLANLEKCENN--VRQMAENGRLQPLLTQILEG-PQETKLSLAAFLGDLAL-NSDVKVLVARTV   77 (572)
Q Consensus         2 ~~~~s~~~~~~~~A~~~L~~L~~~~~n--~~~i~~~g~i~~Lv~~L~~~-~~~~~~~aa~~L~~l~~-~~~~k~~i~~~g   77 (572)
                      .+++|+|++.+..|+.+|+++.+.+.|  +..+++.|++++|+++|+++ ++++|..++++|.+++. +++.+..+.+.|
T Consensus        20 ~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~   99 (434)
T d1q1sc_          20 KGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGG   99 (434)
T ss_dssp             HHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred             HHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHhhhcc
Confidence            357899999999999999998765555  67899999999999999754 57899999999999987 567788888888


Q ss_pred             H-HHHHHhcccCCHHHHHHHHHHHHHhhcCCCc-HHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCC
Q 008257           78 G-SCLINIMKSGNMQAREAALKALNQISSCEPS-AKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHD  155 (572)
Q Consensus        78 ~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~-~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~  155 (572)
                      + |.|+++|+++++++++.|+++|.||+.+.+. +..+.+.|+++.|+.++.....+.........+++++.+++.+...
T Consensus       100 ~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  179 (434)
T d1q1sc_         100 AIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNP  179 (434)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTT
T ss_pred             chhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccc
Confidence            8 9999999999999999999999999987654 6677799999999999976421111123344566666666543211


Q ss_pred             CCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHH
Q 008257          156 FDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRL  235 (572)
Q Consensus       156 ~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~  235 (572)
                      .                                                     .......+.++.|+.++.+++++++.
T Consensus       180 ~-----------------------------------------------------~~~~~~~~~l~~l~~ll~~~~~~~~~  206 (434)
T d1q1sc_         180 A-----------------------------------------------------PPLDAVEQILPTLVRLLHHNDPEVLA  206 (434)
T ss_dssp             C-----------------------------------------------------CCHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred             c-----------------------------------------------------chhhhhhhHHHHHHHHHhccccchhh
Confidence            1                                                     01112356788999999999999999


Q ss_pred             HHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHh
Q 008257          236 ASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVK  315 (572)
Q Consensus       236 ~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~  315 (572)
                      .++++|.+++.+.. +....+... |+++.|++++.+++.  .++..|+.+|.+++.++++.+..+.+.|+++.|+.+++
T Consensus       207 ~a~~~l~~l~~~~~-~~~~~~~~~-~~~~~Lv~ll~~~~~--~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~  282 (434)
T d1q1sc_         207 DSCWAISYLTDGPN-ERIEMVVKK-GVVPQLVKLLGATEL--PIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT  282 (434)
T ss_dssp             HHHHHHHHHTSSCH-HHHHHHHTT-TCHHHHHHHHTCSCH--HHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTT
T ss_pred             hHHhhhcccchhhh-hhHHHHhhc-ccchhcccccccchh--hhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhc
Confidence            99999999997743 433455555 999999999998885  89999999999999988888889999999999999997


Q ss_pred             hhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhcccc
Q 008257          316 SIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNL  395 (572)
Q Consensus       316 ~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~  395 (572)
                      +.          ...+++.++++|.+++..   +++....+.+.|++|.+++++.++ ++++|..|+++|.+++..... 
T Consensus       283 ~~----------~~~v~~~a~~~L~~l~~~---~~~~~~~i~~~~~i~~li~~l~~~-~~~v~~~a~~~l~nl~~~~~~-  347 (434)
T d1q1sc_         283 NP----------KTNIQKEATWTMSNITAG---RQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTV-  347 (434)
T ss_dssp             CS----------SHHHHHHHHHHHHHHTTS---CHHHHHHHHHTTCHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCH-
T ss_pred             cc----------chhhhHHHHHHHhhhccc---cchhHHHHhhhhhHHHHHHHHhcc-ChHHHHHHHHHHHHHHhcCCH-
Confidence            62          456789999999999863   788888999999999999999998 899999999999999864321 


Q ss_pred             CCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCc
Q 008257          396 TKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGV  475 (572)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~  475 (572)
                                                            +....+++.|++++|+++|++.++++...++.+|.+|....+
T Consensus       348 --------------------------------------~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~  389 (434)
T d1q1sc_         348 --------------------------------------EQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE  389 (434)
T ss_dssp             --------------------------------------HHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             --------------------------------------HHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence                                                  223457799999999999999999999999999999975322


Q ss_pred             ---cchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 008257          476 ---DIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERIL  517 (572)
Q Consensus       476 ---~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~  517 (572)
                         ..+.....+.+.||++.|-++. +|+++++++.|..+|+++|
T Consensus       390 ~~~~~~~~~~~~~~~~~~~~i~~L~-~~~n~~i~~~a~~il~~~f  433 (434)
T d1q1sc_         390 KLGETEKLSIMIEECGGLDKIEALQ-RHENESVYKASLNLIEKYF  433 (434)
T ss_dssp             TTTCHHHHHHHHHHTTSHHHHHHHH-TCSSHHHHHHHHHHHHHHC
T ss_pred             hcCCcHHHHHHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHHh
Confidence               1223456788999999886655 7999999999999999987

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.3e-33  Score=301.26  Aligned_cols=403  Identities=15%  Similarity=0.185  Sum_probs=335.1

Q ss_pred             CCCCCHHHHHHHHHHHHhhcc--CcchHHHHHHcCCcHHHHHHHcc-CCHHHHHHHHHHHHHhcc-CcchhHHHHhhhH-
Q 008257            4 SKSENLLTVEKAEKTLANLEK--CENNVRQMAENGRLQPLLTQILE-GPQETKLSLAAFLGDLAL-NSDVKVLVARTVG-   78 (572)
Q Consensus         4 ~~s~~~~~~~~A~~~L~~L~~--~~~n~~~i~~~g~i~~Lv~~L~~-~~~~~~~~aa~~L~~l~~-~~~~k~~i~~~g~-   78 (572)
                      ++|+|+..+..|...++++..  .......++++|++++|+.+|+. .+.++|..|+++|.+++. +++.+..+...|+ 
T Consensus        85 ~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i  164 (503)
T d1wa5b_          85 LNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAV  164 (503)
T ss_dssp             HSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCH
T ss_pred             hcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCCh
Confidence            478899999999999998765  44457899999999999999985 467899999999999987 4556667777787 


Q ss_pred             HHHHHhcccCCHHHHHHHHHHHHHhhcCC-CcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCC
Q 008257           79 SCLINIMKSGNMQAREAALKALNQISSCE-PSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFD  157 (572)
Q Consensus        79 ~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~-~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~  157 (572)
                      |.|+.+|++++.++++.|+++|.||+.+. +++..+++.|++++|+.++.+.     ...++..++|+|.|++.+.....
T Consensus       165 ~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~-----~~~~~~~~~~~l~nl~~~~~~~~  239 (503)
T d1wa5b_         165 PLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN-----KPSLIRTATWTLSNLCRGKKPQP  239 (503)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSC-----CHHHHHHHHHHHHHHHCCSSSCC
T ss_pred             HHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccC-----CHHHHHHHHHHHHHHhcCCccch
Confidence            99999999999999999999999999864 5678888999999999999764     26789999999999987542211


Q ss_pred             ccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHH
Q 008257          158 SITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLAS  237 (572)
Q Consensus       158 ~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a  237 (572)
                                                                           ......++++.|+.++.+++++++..+
T Consensus       240 -----------------------------------------------------~~~~~~~~l~~l~~~l~~~d~~~~~~~  266 (503)
T d1wa5b_         240 -----------------------------------------------------DWSVVSQALPTLAKLIYSMDTETLVDA  266 (503)
T ss_dssp             -----------------------------------------------------CHHHHGGGHHHHHHHTTCCCHHHHHHH
T ss_pred             -----------------------------------------------------HHHHHHHHHHHHHHHhccccHHHHHHH
Confidence                                                                 011236789999999999999999999


Q ss_pred             HHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhh
Q 008257          238 IELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSI  317 (572)
Q Consensus       238 ~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~  317 (572)
                      +++|.+++.+.. +....+.+. |+++.|+.++.+++.  .++..|+.+|++++.+++.....+.+.|+++.|..++.+ 
T Consensus       267 ~~~l~~l~~~~~-~~~~~~~~~-~~~~~l~~ll~~~~~--~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~-  341 (503)
T d1wa5b_         267 CWAISYLSDGPQ-EAIQAVIDV-RIPKRLVELLSHEST--LVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSS-  341 (503)
T ss_dssp             HHHHHHHHSSCH-HHHHHHHHT-TCHHHHHHGGGCSCH--HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC-
T ss_pred             HHHHHhhccCCc-hhhhhhhhh-hhhhhhhhcccCCch--hhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcC-
Confidence            999999997743 333456666 999999999999885  899999999999999888888889999999999999976 


Q ss_pred             ccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCC
Q 008257          318 QLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTK  397 (572)
Q Consensus       318 ~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~  397 (572)
                               ....+++.++++|.+++.+   +++....+.+.|++|.+++++.++ +.++|..|+++|.|++.+..+.. 
T Consensus       342 ---------~~~~i~~~~~~~l~nl~~~---~~~~~~~i~~~~~l~~li~~l~~~-~~~v~~~a~~~l~nl~~~~~~~~-  407 (503)
T d1wa5b_         342 ---------PKENIKKEACWTISNITAG---NTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRP-  407 (503)
T ss_dssp             ---------SCHHHHHHHHHHHHHHTTS---CHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCT-
T ss_pred             ---------CCHHHHHHHHHHHHHHhhc---cHHHHHHHHHccccchhHHhcccC-ChhHHHHHHHHHHHHHhcccccH-
Confidence                     2456788999999999864   889999999999999999999998 89999999999999986543210 


Q ss_pred             CCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCc--
Q 008257          398 LPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGV--  475 (572)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~--  475 (572)
                                                          .....+++.|++++|+++|.+.++++...++.+|.++...+.  
T Consensus       408 ------------------------------------~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~~~~~  451 (503)
T d1wa5b_         408 ------------------------------------DIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEAD  451 (503)
T ss_dssp             ------------------------------------HHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------------------------------------HHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence                                                011236789999999999999999999999999999874322  


Q ss_pred             ------cchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcch
Q 008257          476 ------DIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTD  520 (572)
Q Consensus       476 ------~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~~  520 (572)
                            ........|.++||+..|-.+. .|+++.+++.|..+|.++|..+
T Consensus       452 ~~~~~~~~~~~~~~iee~g~~~~i~~Lq-~~~~~~i~~~A~~il~~~f~~~  501 (503)
T d1wa5b_         452 KEARGLNINENADFIEKAGGMEKIFNCQ-QNENDKIYEKAYKIIETYFGEE  501 (503)
T ss_dssp             HHHHTCSSCHHHHHHHHTTHHHHHHGGG-GCSCHHHHHHHHHHHHHHSSSC
T ss_pred             hhhhcccchHHHHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCc
Confidence                  1123456788999999985544 7999999999999999999654

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.4e-33  Score=292.54  Aligned_cols=405  Identities=13%  Similarity=0.172  Sum_probs=333.4

Q ss_pred             hHHHHHHhcccCCHHHHHHHHHHHHHhhcCCCc--HHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCC
Q 008257           77 VGSCLINIMKSGNMQAREAALKALNQISSCEPS--AKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGH  154 (572)
Q Consensus        77 g~~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~--~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~  154 (572)
                      .++.||++|+|++++.|..|+.+|+++.+.+.+  .+.+++.|++|+|+++|++..    ++.+|..|+++|.|++....
T Consensus        14 ~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~----~~~v~~~a~~~L~~la~~~~   89 (434)
T d1q1sc_          14 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD----CSPIQFESAWALTNIASGTS   89 (434)
T ss_dssp             CHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGG----GHHHHHHHHHHHHHHHTSCH
T ss_pred             hHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCC----CHHHHHHHHHHHHHHhcCCh
Confidence            348999999999999999999999999876666  578899999999999997532    36899999999999987543


Q ss_pred             CCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCH---
Q 008257          155 DFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQN---  231 (572)
Q Consensus       155 ~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~---  231 (572)
                      ..        ...+...|+++.|+.+|.+++++++..++++|.+++.+..   ..+..+.+.|+++.|+.++...+.   
T Consensus        90 ~~--------~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~---~~~~~i~~~~~~~~l~~~l~~~~~~~~  158 (434)
T d1q1sc_          90 EQ--------TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGS---AFRDLVIKHGAIDPLLALLAVPDLSTL  158 (434)
T ss_dssp             HH--------HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH---HHHHHHHHTTCHHHHHHHTCSSCGGGS
T ss_pred             hh--------hhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccch---HHHHHHHHhhhhhHHHHHHHhcccccc
Confidence            21        1346778999999999999999999999999999998763   567888999999999999987643   


Q ss_pred             --HHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHH
Q 008257          232 --DLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGL  309 (572)
Q Consensus       232 --~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~  309 (572)
                        .....+.+.+.+++....... ...... +.++.|+.++.++++  +++..++++|.+++.++.+....+.+.|++|.
T Consensus       159 ~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~-~~l~~l~~ll~~~~~--~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~  234 (434)
T d1q1sc_         159 ACGYLRNLTWTLSNLCRNKNPAP-PLDAVE-QILPTLVRLLHHNDP--EVLADSCWAISYLTDGPNERIEMVVKKGVVPQ  234 (434)
T ss_dssp             CHHHHHHHHHHHHHHTCCCTTCC-CHHHHH-HHHHHHHHHTTCSCH--HHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHH
T ss_pred             hHHHHHHHHHHHHHHhhcccccc-hhhhhh-hHHHHHHHHHhcccc--chhhhHHhhhcccchhhhhhHHHHhhcccchh
Confidence              345677888999986532221 111222 678999999998885  89999999999999888788788899999999


Q ss_pred             HHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhh
Q 008257          310 IFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLS  389 (572)
Q Consensus       310 Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls  389 (572)
                      |+.++.+          ....++..++.+|.+++..   +++....+.+.|+++.|+.+|+++ ++++|+.|+++|.+++
T Consensus       235 Lv~ll~~----------~~~~~~~~al~~l~~l~~~---~~~~~~~~~~~~~~~~l~~ll~~~-~~~v~~~a~~~L~~l~  300 (434)
T d1q1sc_         235 LVKLLGA----------TELPIVTPALRAIGNIVTG---TDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNIT  300 (434)
T ss_dssp             HHHHHTC----------SCHHHHHHHHHHHHHHTTS---CHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHT
T ss_pred             ccccccc----------chhhhhhchhhhhhhHHhh---hhHHHHHHHhccccchHHHhhccc-chhhhHHHHHHHhhhc
Confidence            9999976          2466788999999999864   778888899999999999999998 9999999999999997


Q ss_pred             hhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHH
Q 008257          390 LESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALST  469 (572)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~  469 (572)
                      .+...                                        ....+.+.|+++.+++++.+.+.+++..|+++|++
T Consensus       301 ~~~~~----------------------------------------~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~n  340 (434)
T d1q1sc_         301 AGRQD----------------------------------------QIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITN  340 (434)
T ss_dssp             TSCHH----------------------------------------HHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred             cccch----------------------------------------hHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHH
Confidence            54321                                        12236688999999999999999999999999999


Q ss_pred             hhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcc-------hhhhhhhcCCCCchHHHHHHhhc
Q 008257          470 VIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRT-------DDIAYEVSGDPNVSTALVDAFQH  542 (572)
Q Consensus       470 l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~-------~~~~~~~~~~~~~~~~Lv~ll~~  542 (572)
                      ++.++.  .+....+.+.|++++|++++ .++++++...++++|.+++..       +..+..+...+++. .|-++..+
T Consensus       341 l~~~~~--~~~~~~l~~~~~i~~L~~ll-~~~d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~-~i~~L~~~  416 (434)
T d1q1sc_         341 YTSGGT--VEQIVYLVHCGIIEPLMNLL-SAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLD-KIEALQRH  416 (434)
T ss_dssp             HHHHSC--HHHHHHHHHTTCHHHHHHHT-TSSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHH-HHHHHHTC
T ss_pred             HHhcCC--HHHHHHHHHCCcHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHH-HHHHHHcC
Confidence            997653  23456788999999999999 589999999999999998742       23455566666664 67777788


Q ss_pred             CCchhHHHHHHHHHhh
Q 008257          543 ADYRTRQIAERALKHI  558 (572)
Q Consensus       543 ~~~~~~~~Aa~aL~~L  558 (572)
                      .++++++.|.+.|.+.
T Consensus       417 ~n~~i~~~a~~il~~~  432 (434)
T d1q1sc_         417 ENESVYKASLNLIEKY  432 (434)
T ss_dssp             SSHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            8999999999999764

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.8e-32  Score=288.37  Aligned_cols=409  Identities=15%  Similarity=0.147  Sum_probs=337.0

Q ss_pred             hHHHHHHhcccCCHHHHHHHHHHHHHhhcCCC--cHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCC
Q 008257           77 VGSCLINIMKSGNMQAREAALKALNQISSCEP--SAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGH  154 (572)
Q Consensus        77 g~~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~--~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~  154 (572)
                      .++.+++.+.+++.+.+..|+..++++.+.+.  ..+.++++|++|+|+++|++.    .+..++..|+++|.|++.++.
T Consensus        77 ~l~~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~----~~~~iq~~a~~~L~ni~~~~~  152 (503)
T d1wa5b_          77 ELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMREN----QPEMLQLEAAWALTNIASGTS  152 (503)
T ss_dssp             CHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTT----SCHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCC----CCHHHHHHHHHHHHHHHcCCH
Confidence            45899999999999999999999999886443  367889999999999999763    247799999999999987543


Q ss_pred             CCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHH
Q 008257          155 DFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLR  234 (572)
Q Consensus       155 ~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~  234 (572)
                      ..        ...+...|+++.++.+|.+++.+++..++++|.+++...   ...+..+.+.|+++.|+.++.+.++.++
T Consensus       153 ~~--------~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~---~~~r~~l~~~~~~~~L~~ll~~~~~~~~  221 (503)
T d1wa5b_         153 AQ--------TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDS---TDYRDYVLQCNAMEPILGLFNSNKPSLI  221 (503)
T ss_dssp             HH--------HHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTC---HHHHHHHHHTTCHHHHHHGGGSCCHHHH
T ss_pred             HH--------HHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhh---HHHHHHHHhhcccccchhhcccCCHHHH
Confidence            21        134667899999999999999999999999999999875   3678889999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHH
Q 008257          235 LASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRV  314 (572)
Q Consensus       235 ~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL  314 (572)
                      ..++|+|.+++.+..... +..... ++++.|+.++.+++.  +.+..++++|.+++..+++....+++.|+++.++.++
T Consensus       222 ~~~~~~l~nl~~~~~~~~-~~~~~~-~~l~~l~~~l~~~d~--~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll  297 (503)
T d1wa5b_         222 RTATWTLSNLCRGKKPQP-DWSVVS-QALPTLAKLIYSMDT--ETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELL  297 (503)
T ss_dssp             HHHHHHHHHHHCCSSSCC-CHHHHG-GGHHHHHHHTTCCCH--HHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGG
T ss_pred             HHHHHHHHHHhcCCccch-HHHHHH-HHHHHHHHHhccccH--HHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcc
Confidence            999999999986532211 112222 789999999998885  8889999999999887888878899999999999999


Q ss_pred             hhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccc
Q 008257          315 KSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKN  394 (572)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~  394 (572)
                      .+          .+..+...++.+|.+++..   +......+.+.|++|.|..+++++ ++.+++.++|+|.|++...++
T Consensus       298 ~~----------~~~~v~~~al~~l~nl~~~---~~~~~~~~~~~~~l~~l~~ll~~~-~~~i~~~~~~~l~nl~~~~~~  363 (503)
T d1wa5b_         298 SH----------ESTLVQTPALRAVGNIVTG---NDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTE  363 (503)
T ss_dssp             GC----------SCHHHHHHHHHHHHHHTTS---CHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHH
T ss_pred             cC----------CchhhhhhHHHHHHHHHHH---HHHHHHhhhccchHHHHHHHhcCC-CHHHHHHHHHHHHHHhhccHH
Confidence            76          2456788899999999864   677788889999999999999998 999999999999999754321


Q ss_pred             cCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcC
Q 008257          395 LTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDG  474 (572)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~  474 (572)
                                                              ....+++.|++++++++|.+.+.+++..|+++|.+++.++
T Consensus       364 ----------------------------------------~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~~  403 (503)
T d1wa5b_         364 ----------------------------------------QIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGG  403 (503)
T ss_dssp             ----------------------------------------HHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred             ----------------------------------------HHHHHHHccccchhHHhcccCChhHHHHHHHHHHHHHhcc
Confidence                                                    2234678999999999999999999999999999999765


Q ss_pred             ccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcchh------------hhhhhcCCCCchHHHHHHhhc
Q 008257          475 VDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDD------------IAYEVSGDPNVSTALVDAFQH  542 (572)
Q Consensus       475 ~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~~~------------~~~~~~~~~~~~~~Lv~ll~~  542 (572)
                      ...+.....+.+.|++++|+++| .+.++++...+..+|.+++...+            +...+...+++. .|-.+..+
T Consensus       404 ~~~~~~~~~l~~~~~l~~l~~~L-~~~d~~~~~~~L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~~-~i~~Lq~~  481 (503)
T d1wa5b_         404 LQRPDIIRYLVSQGCIKPLCDLL-EIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGME-KIFNCQQN  481 (503)
T ss_dssp             TTCTHHHHHHHHTTCHHHHHHHT-TTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHH-HHHGGGGC
T ss_pred             cccHHHHHHHHHCCcHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHCCCHH-HHHHHHcC
Confidence            43344567788999999999999 58899999999999999875321            122344445553 66667778


Q ss_pred             CCchhHHHHHHHHHhhcc
Q 008257          543 ADYRTRQIAERALKHIDK  560 (572)
Q Consensus       543 ~~~~~~~~Aa~aL~~L~~  560 (572)
                      .+.+++++|.+.|...+.
T Consensus       482 ~~~~i~~~A~~il~~~f~  499 (503)
T d1wa5b_         482 ENDKIYEKAYKIIETYFG  499 (503)
T ss_dssp             SCHHHHHHHHHHHHHHSS
T ss_pred             CCHHHHHHHHHHHHHHcC
Confidence            889999999999987654

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=9.5e-30  Score=263.72  Aligned_cols=411  Identities=13%  Similarity=0.091  Sum_probs=286.8

Q ss_pred             CCcHHHHHHHccCCHHHHHHHHHHHHHhcc-CcchhHHHHhhhH-HHHHHhcccCCHHHHHHHHHHHHHhhc-CCCcHHH
Q 008257           36 GRLQPLLTQILEGPQETKLSLAAFLGDLAL-NSDVKVLVARTVG-SCLINIMKSGNMQAREAALKALNQISS-CEPSAKV  112 (572)
Q Consensus        36 g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~-~~~~k~~i~~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~-~~~~~~~  112 (572)
                      +.||.||++|+++++++|..|+++|++++. ++++|..+.+.|+ |+|+++|+++++++|+.|+++|.+|+. +++++..
T Consensus         2 ~~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~   81 (457)
T d1xm9a1           2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE   81 (457)
T ss_dssp             CCHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             CCHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            358999999999999999999999999987 7889999999988 999999999999999999999999996 4567888


Q ss_pred             HHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHH-----------
Q 008257          113 LIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLI-----------  181 (572)
Q Consensus       113 iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL-----------  181 (572)
                      +++.|+|+.|+.++.+.    .++.++..|+++|.+++.+.....         ... ...++.++..+           
T Consensus        82 i~~~g~v~~li~~l~~~----~~~~~~~~a~~~l~~l~~~~~~~~---------~~~-~~~~~~l~~~~~~~~~~~~~~~  147 (457)
T d1xm9a1          82 TRRQNGIREAVSLLRRT----GNAEIQKQLTGLLWNLSSTDELKE---------ELI-ADALPVLADRVIIPFSGWCDGN  147 (457)
T ss_dssp             HHHTTCHHHHHHHHTTC----CCHHHHHHHHHHHHHHHTSSSTHH---------HHH-HHHHHHHHHHTTHHHHTCC---
T ss_pred             HHHCCChHHHHHHHhcc----CcHHHHHHHHHHHHHHHhhhhhHH---------HHH-hcccHHHHHHHHhhhhhhhcch
Confidence            89999999999999764    247899999999999987543211         122 23445554443           


Q ss_pred             -----hcCChhHHHHHHHHHHHccCCCCccHHHHHHH-HhcCChHHHHHHhcCCCH------HHHHHHHHHHHHcCCCCC
Q 008257          182 -----SNTGPTIECKLLQVLVGLTSSPTTVLSVVSAI-KSSGATISLVQFVEAPQN------DLRLASIELIQNLSPHMG  249 (572)
Q Consensus       182 -----~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i-~~~g~i~~Lv~lL~~~~~------~v~~~a~~~L~~Ls~~~~  249 (572)
                           ...+++++..++++|..++.+..    .+..+ ...|+++.|+.++++...      .........+........
T Consensus       148 ~~~~~~~~~~~v~~~a~~~l~~~~~~~~----~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  223 (457)
T d1xm9a1         148 SNMSREVVDPEVFFNATGCLRNLSSADA----GRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLD  223 (457)
T ss_dssp             ------CCCHHHHHHHHHHHHHHTTSHH----HHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHH
T ss_pred             hhhhcccccHHHHHHHHHHHHHHhcCch----HHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhH
Confidence                 23577889999999999988753    34443 346778999999864321      223344444444432210


Q ss_pred             ----hhHHHHHhcc--cCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCC
Q 008257          250 ----HELADALRGA--VGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETR  323 (572)
Q Consensus       250 ----~~~~~~i~~~--~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~  323 (572)
                          ..........  ..........+..... ......+...+..+.. +......+.+.++++.++.++...      
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~l~~l~~~~------  295 (457)
T d1xm9a1         224 AEVPTRYRQLEYNARNAYTEKSSTGCFSNKSD-KMMNNNYDCPLPEEET-NPKGSGWLYHSDAIRTYLNLMGKS------  295 (457)
T ss_dssp             HHSCCHHHHHHHTC-----------------------------CCCCCS-SCCGGGGGGSHHHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHHhhhhhhhhHHHhhhhhhhhhH-HHHHHHHhhhhHHhhh-hhHHHHHHHhhcHHHHHHHHHhcc------
Confidence                0000000000  0111222222222221 0112222233344433 444446677888999999998763      


Q ss_pred             CCcchhhHHHHHHHHHHHHhccCCCCh----HHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCC
Q 008257          324 GSRFVTPFLEGLLSVLARVTFVLSDEP----DAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLP  399 (572)
Q Consensus       324 ~~~~~~~~~e~a~~aL~~l~~~~~~~~----~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~  399 (572)
                         ....+++.+.+++..++..  ...    ..+..+.+.|++|.|+++|+++ ++.++..++++|.+++.+..+     
T Consensus       296 ---~~~~~~~~~~~~l~~l~~~--~~~~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~l~~La~~~~~-----  364 (457)
T d1xm9a1         296 ---KKDATLEACAGALQNLTAS--KGLMSSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRHPLL-----  364 (457)
T ss_dssp             ---CCHHHHHHHHHHHHHHTTC--SSSHHHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSGGG-----
T ss_pred             ---cchHHHHHHHHHHHHHhhc--cccchHHHHHHHHHHcCChHHHHhhhcCc-cHHHHHHHHHHHHHHhhChhH-----
Confidence               1345678888889888753  111    2345567889999999999998 999999999999999864321     


Q ss_pred             CCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcC------CCHhHHHHHHHHHHHhhhc
Q 008257          400 ELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDH------TNEKVVEASLAALSTVIDD  473 (572)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~------~~~~v~~~A~~aL~~l~~~  473 (572)
                                                          . ..+..+++++|+++|..      .+++++..|+.+|.+++.+
T Consensus       365 ------------------------------------~-~~i~~~~i~~li~~L~~~~~~~~~~~~v~~~a~~~L~~l~~~  407 (457)
T d1xm9a1         365 ------------------------------------H-RVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMAS  407 (457)
T ss_dssp             ------------------------------------H-HHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTT
T ss_pred             ------------------------------------H-HHHHHhhHHHHHHHHhccccCcCCcHHHHHHHHHHHHHHhcC
Confidence                                                1 12345789999999964      3467999999999999976


Q ss_pred             CccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcchhhh
Q 008257          474 GVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIA  523 (572)
Q Consensus       474 ~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~~~~~  523 (572)
                      +.   ...+.+.++||+++|++++.+++++.+++.|..+|.+++.+.+.|
T Consensus       408 ~~---~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~~~~  454 (457)
T d1xm9a1         408 QP---QLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQ  454 (457)
T ss_dssp             CT---HHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTCS
T ss_pred             CH---HHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCHhhH
Confidence            54   457789999999999999975667899999999999999886654

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.3e-26  Score=236.77  Aligned_cols=369  Identities=14%  Similarity=0.098  Sum_probs=272.6

Q ss_pred             CCCCCCHHHHHHHHHHHHhhcc-CcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhcc-CcchhHHHHhhhH-H
Q 008257            3 SSKSENLLTVEKAEKTLANLEK-CENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLAL-NSDVKVLVARTVG-S   79 (572)
Q Consensus         3 ~~~s~~~~~~~~A~~~L~~L~~-~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~-~~~~k~~i~~~g~-~   79 (572)
                      +++|+||.++..|+.+|.+|+. +++++..+++.|+|++|+++|+++++++|..|+++|.+++. ++++|..+.+.|+ +
T Consensus        10 ~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~v~   89 (457)
T d1xm9a1          10 YLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIR   89 (457)
T ss_dssp             HHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHH
T ss_pred             HhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCChH
Confidence            5789999999999999999996 78999999999999999999999999999999999999986 6788889988887 9


Q ss_pred             HHHHhccc-CCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccC-----------CCCCCcchHHHHHHHHH
Q 008257           80 CLINIMKS-GNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVG-----------SNHLPMRLKEVSATILA  147 (572)
Q Consensus        80 ~Lv~lL~s-~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~-----------~~~~~~~~~~~aa~~L~  147 (572)
                      .|+.++.+ .+++++..|+++|.+++.++..+...... ++++++..+....           .+..+..+++.++++|.
T Consensus        90 ~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~l~  168 (457)
T d1xm9a1          90 EAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIAD-ALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLR  168 (457)
T ss_dssp             HHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHH-HHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHH
T ss_pred             HHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhc-ccHHHHHHHHhhhhhhhcchhhhhcccccHHHHHHHHHHHH
Confidence            99998865 67889999999999999988777666654 4555555442110           01124688999999999


Q ss_pred             HHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCCh------hHHHHHHHHHHHcc---------------CC----
Q 008257          148 NVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGP------TIECKLLQVLVGLT---------------SS----  202 (572)
Q Consensus       148 nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~------~~q~~a~~aL~~l~---------------~~----  202 (572)
                      +++.+..+..        ......|+++.++.++.+...      .....+...+....               ..    
T Consensus       169 ~~~~~~~~~~--------~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  240 (457)
T d1xm9a1         169 NLSSADAGRQ--------TMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA  240 (457)
T ss_dssp             HHTTSHHHHH--------HHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---
T ss_pred             HHhcCchHHH--------HHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhh
Confidence            9986543211        123446788888888863211      11111111111000               00    


Q ss_pred             ----------------------------CCccHHHHHHHHhcCChHHHHHHhcCC-CHHHHHHHHHHHHHcCCCCCh---
Q 008257          203 ----------------------------PTTVLSVVSAIKSSGATISLVQFVEAP-QNDLRLASIELIQNLSPHMGH---  250 (572)
Q Consensus       203 ----------------------------~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~a~~~L~~Ls~~~~~---  250 (572)
                                                  ..........+.+.++++.|+.++... ++.++..+.+++.+++.+...   
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~  320 (457)
T d1xm9a1         241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS  320 (457)
T ss_dssp             -------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHH
T ss_pred             hhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchH
Confidence                                        000001112223456788899988654 578999999999999865322   


Q ss_pred             h-HHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchh
Q 008257          251 E-LADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVT  329 (572)
Q Consensus       251 ~-~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~  329 (572)
                      . .+..+... |+++.|+++|.+++.  +++..+++++++|+. +++.+..+. .++++.++.+|......    .....
T Consensus       321 ~~~~~~~~~~-~~l~~L~~~l~~~~~--~v~~~a~~~l~~La~-~~~~~~~i~-~~~i~~li~~L~~~~~~----~~~~~  391 (457)
T d1xm9a1         321 GMSQLIGLKE-KGLPQIARLLQSGNS--DVVRSGASLLSNMSR-HPLLHRVMG-NQVFPEVTRLLTSHTGN----TSNSE  391 (457)
T ss_dssp             HHHHHHHTTS-CCHHHHHHHTTCSCH--HHHHHHHHHHHHHHT-SGGGHHHHH-HHTHHHHHHTTTSCCSC----STTHH
T ss_pred             HHHHHHHHHc-CChHHHHhhhcCccH--HHHHHHHHHHHHHhh-ChhHHHHHH-HhhHHHHHHHHhccccC----cCCcH
Confidence            1 12234444 899999999998885  899999999999987 556655554 57899999999763211    12456


Q ss_pred             hHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhc
Q 008257          330 PFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLES  392 (572)
Q Consensus       330 ~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~  392 (572)
                      ++++.++++|.+++.   .+++.++.+.+.|+++.|++++++.+++.+++.|+.+|++|+.+.
T Consensus       392 ~v~~~a~~~L~~l~~---~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~  451 (457)
T d1xm9a1         392 DILSSACYTVRNLMA---SQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSK  451 (457)
T ss_dssp             HHHHHHHHHHHHHHT---TCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSST
T ss_pred             HHHHHHHHHHHHHhc---CCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCH
Confidence            789999999999986   489999999999999999999988657889999999999997543

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=3.3e-18  Score=165.27  Aligned_cols=187  Identities=18%  Similarity=0.197  Sum_probs=162.2

Q ss_pred             CCCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHH-HHccCCHHHHHHHHHHHHHhccC-cchhHHHHhhhH-HHH
Q 008257            5 KSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLT-QILEGPQETKLSLAAFLGDLALN-SDVKVLVARTVG-SCL   81 (572)
Q Consensus         5 ~s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~-~L~~~~~~~~~~aa~~L~~l~~~-~~~k~~i~~~g~-~~L   81 (572)
                      ++.|.+....|..+|.+|+.+.+|...+...|++++++. +|.+++.++|..|+.+|++++.+ +..+..+.+.|+ |+|
T Consensus        27 ~~~~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~L  106 (264)
T d1xqra1          27 QAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKL  106 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence            355677889999999999999899999999999999986 78889999999999999999984 566777888877 999


Q ss_pred             HHhccc-CCHHHHHHHHHHHHHhhcCCC-cHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCcc
Q 008257           82 INIMKS-GNMQAREAALKALNQISSCEP-SAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSI  159 (572)
Q Consensus        82 v~lL~s-~~~~~~~~A~~aL~~Ls~~~~-~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~  159 (572)
                      +++|.+ .++.++..|+++|.+|+.+.+ ++..+++.|++++|+++|.+.+     ..++..++++|+|++..+++..  
T Consensus       107 v~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~-----~~~~~~a~~~L~~l~~~~~~~~--  179 (264)
T d1xqra1         107 LRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQV-----QKLKVKSAFLLQNLLVGHPEHK--  179 (264)
T ss_dssp             HHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSC-----HHHHHHHHHHHHHHHHHCGGGH--
T ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCc-----hHHHHHHHHHHHHHHhccHHHH--
Confidence            999975 578899999999999998655 4677789999999999998753     7899999999999987644322  


Q ss_pred             ccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCC
Q 008257          160 TVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPT  204 (572)
Q Consensus       160 ~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~  204 (572)
                            ..+...|+++.|+.+|.++++++|..++++|.+++....
T Consensus       180 ------~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~  218 (264)
T d1xqra1         180 ------GTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFP  218 (264)
T ss_dssp             ------HHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCH
T ss_pred             ------HHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCH
Confidence                  356778999999999999999999999999999997653

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.8e-18  Score=167.18  Aligned_cols=193  Identities=15%  Similarity=0.112  Sum_probs=162.6

Q ss_pred             HccCCHHHHHHHHHHHHHhccCcchhHHHHhhhH-HHHHH-hcccCCHHHHHHHHHHHHHhhcCCC-cHHHHHHcCChHH
Q 008257           45 ILEGPQETKLSLAAFLGDLALNSDVKVLVARTVG-SCLIN-IMKSGNMQAREAALKALNQISSCEP-SAKVLIHAGILPP  121 (572)
Q Consensus        45 L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~Lv~-lL~s~~~~~~~~A~~aL~~Ls~~~~-~~~~iv~~G~i~~  121 (572)
                      ....+.+.+..|..+|.+++.+.+++..+...|+ ++|+. +|+++++++|..|+++|.+++.+++ .+..+++.|++|+
T Consensus        26 ~~~~~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~  105 (264)
T d1xqra1          26 EQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRK  105 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred             hcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH
Confidence            3345567788889999999988888888888877 88875 8889999999999999999998655 4677889999999


Q ss_pred             HHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccC
Q 008257          122 LVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTS  201 (572)
Q Consensus       122 Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~  201 (572)
                      |+++|.+.    .++.++..|+++|.+++.+.....        ..+...|+++.|++++.+++++++..++++|.+++.
T Consensus       106 Lv~lL~~~----~~~~v~~~a~~aL~~l~~~~~~~~--------~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~  173 (264)
T d1xqra1         106 LLRLLDRD----ACDTVRVKALFAISCLVREQEAGL--------LQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLV  173 (264)
T ss_dssp             HHHHHHHC----SCHHHHHHHHHHHHHHHTTCHHHH--------HHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhcC----CCHHHHHHHHHHHHHHhccchhhH--------HHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHh
Confidence            99999753    247899999999999997654222        346678899999999999999999999999999987


Q ss_pred             CCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhH
Q 008257          202 SPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHEL  252 (572)
Q Consensus       202 ~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~  252 (572)
                      ...   ..+..+.+.|+++.|+.+|.++++++|+.|+++|.+|+.+.+...
T Consensus       174 ~~~---~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~  221 (264)
T d1xqra1         174 GHP---EHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGV  221 (264)
T ss_dssp             HCG---GGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHH
T ss_pred             ccH---HHHHHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHH
Confidence            543   357788899999999999999999999999999999997754443

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=3.5e-15  Score=160.28  Aligned_cols=418  Identities=13%  Similarity=0.127  Sum_probs=284.3

Q ss_pred             cHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhH-HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHc
Q 008257           38 LQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVG-SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHA  116 (572)
Q Consensus        38 i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~  116 (572)
                      ++.+.+++++.++.+|..++.++..++..-...  .....+ |.|.++++.++..+|..|+.++..++..-+..  -...
T Consensus       166 ~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~--~~~~  241 (588)
T d1b3ua_         166 RQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE--DLEA  241 (588)
T ss_dssp             HHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH--HHHH
T ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHHHHHhcHH--HHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHH--HHHH
Confidence            344556677888889999999998877632221  112345 88888999999999999999999988643221  1223


Q ss_pred             CChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHH
Q 008257          117 GILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVL  196 (572)
Q Consensus       117 G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL  196 (572)
                      -.+|.+..++...     +..+|..++.+|.+++..-.           ........++.+..++.+++++++..++++|
T Consensus       242 ~i~~~l~~~~~D~-----~~~Vr~~~~~~l~~l~~~~~-----------~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l  305 (588)
T d1b3ua_         242 LVMPTLRQAAEDK-----SWRVRYMVADKFTELQKAVG-----------PEITKTDLVPAFQNLMKDCEAEVRAAASHKV  305 (588)
T ss_dssp             HTHHHHHHHHTCS-----SHHHHHHHHHTHHHHHHHHC-----------HHHHHHTHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccc-----cHHHHHHHHHhHHHHHHHhh-----------hhhhhhhhhHHHHHHHhccchHHHHHHHHHH
Confidence            3678888877543     47899999999999975311           1233456789999999999999999999999


Q ss_pred             HHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCC
Q 008257          197 VGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGI  276 (572)
Q Consensus       197 ~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~  276 (572)
                      ..++..-..  .......-...++.+..++.+.++.+|..++..+..++...+.+   ...+  ..+|.+..++..++. 
T Consensus       306 ~~~~~~l~~--~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~~~---~~~~--~l~p~l~~~l~d~~~-  377 (588)
T d1b3ua_         306 KEFCENLSA--DCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD---NTIE--HLLPLFLAQLKDECP-  377 (588)
T ss_dssp             HHHHHTSCT--TTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH---HHHH--HTHHHHHHHHTCSCH-
T ss_pred             HHHHHHHhh--hhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccchh---HHHH--HHHHHHHHHHHhhhh-
Confidence            888764221  11222223457888889999999999999888887776432222   1222  367888888887774 


Q ss_pred             hHHHHHHHHHHhcCCC--CcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHH
Q 008257          277 SKEQAAAVGLLAELPE--RDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIA  354 (572)
Q Consensus       277 ~~~~~~A~~~L~~L~~--~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~  354 (572)
                       +++..++..+..+..  +....     ....+|.+..++.+          .+..+++.++..+..++..+  .++.  
T Consensus       378 -~v~~~~~~~l~~~~~~~~~~~~-----~~~ll~~l~~~~~d----------~~~~~r~~~~~~l~~l~~~~--~~~~--  437 (588)
T d1b3ua_         378 -EVRLNIISNLDCVNEVIGIRQL-----SQSLLPAIVELAED----------AKWRVRLAIIEYMPLLAGQL--GVEF--  437 (588)
T ss_dssp             -HHHHHHHTTCHHHHHHSCHHHH-----HHHHHHHHHHHHTC----------SSHHHHHHHHHHHHHHHHHH--CGGG--
T ss_pred             -hhhhHHHHHHHHHHhhcchhhh-----hhHHHHHHHHHHhc----------ccHHHHHHHHHHHHHHHHHc--ChHh--
Confidence             777777666554422  11111     12346677777654          13345677777777665321  1111  


Q ss_pred             HHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCcc
Q 008257          355 LCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLK  434 (572)
Q Consensus       355 ~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~  434 (572)
                        ......|.+..++.++ ...+|..|+.+|..++..-+.                                        
T Consensus       438 --~~~~l~~~l~~~l~D~-~~~VR~~A~~~L~~l~~~~~~----------------------------------------  474 (588)
T d1b3ua_         438 --FDEKLNSLCMAWLVDH-VYAIREAATSNLKKLVEKFGK----------------------------------------  474 (588)
T ss_dssp             --CCHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCH----------------------------------------
T ss_pred             --HHHHHHHHHHhhccCC-chhHHHHHHHHHHHHHHHhCc----------------------------------------
Confidence              1123467788889888 899999999999988653210                                        


Q ss_pred             chhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHH
Q 008257          435 ETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVE  514 (572)
Q Consensus       435 ~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~  514 (572)
                       .  -.....++.+.+++.+++..++..++.++..+...-.     .. .....-+|.+++++ .++.+.+|..++++|.
T Consensus       475 -~--~~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~-----~~-~~~~~ilp~ll~~~-~D~v~nVR~~a~~~l~  544 (588)
T d1b3ua_         475 -E--WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG-----QD-ITTKHMLPTVLRMA-GDPVANVRFNVAKSLQ  544 (588)
T ss_dssp             -H--HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHH-----HH-HHHHHTHHHHHHGG-GCSCHHHHHHHHHHHH
T ss_pred             -H--HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcC-----hH-HHHHHHHHHHHHHc-CCCCHHHHHHHHHHHH
Confidence             0  0123367888999999999999999999998875311     11 22234678888988 5888999999999999


Q ss_pred             HHHcchhhhhhhcCCCCchHHHHHHhhcCCchhHHHHHHHHHhhc
Q 008257          515 RILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHID  559 (572)
Q Consensus       515 ~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~  559 (572)
                      ++...-+... +..  .+.+.|..++.+.|.+||..|.+||..|.
T Consensus       545 ~i~~~~~~~~-~~~--~i~~~l~~L~~D~d~dVr~~A~~al~~l~  586 (588)
T d1b3ua_         545 KIGPILDNST-LQS--EVKPILEKLTQDQDVDVKYFAQEALTVLS  586 (588)
T ss_dssp             HHGGGSCHHH-HHH--HHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCcHh-HHH--HHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence            9985421111 111  13346778888999999999999999885

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=9.9e-15  Score=156.71  Aligned_cols=454  Identities=11%  Similarity=0.104  Sum_probs=302.2

Q ss_pred             CCCCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCC-HHHHHHHHHHHHHhccCcchhHHHHhhhH-HHH
Q 008257            4 SKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGP-QETKLSLAAFLGDLALNSDVKVLVARTVG-SCL   81 (572)
Q Consensus         4 ~~s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~-~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~L   81 (572)
                      +.++|+.+++.|..+|..+...-.. ..+ + ..+.|++..|..++ ...|..|+..+..+......  .... .. +.+
T Consensus        96 ~~~~~~~Vr~~a~~~l~~i~~~~~~-~~~-~-~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~--~~~~-~l~~~~  169 (588)
T d1b3ua_          96 ATVEETVVRDKAVESLRAISHEHSP-SDL-E-AHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSS--AVKA-ELRQYF  169 (588)
T ss_dssp             TTSSCHHHHHHHHHHHHHHHTTSCH-HHH-H-HTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCH--HHHH-HHHHHH
T ss_pred             ccCCCHHHHHHHHHHHHHHHHhCCH-HHH-H-HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhH--HHHH-HHHHHH
Confidence            3567888889999988888763222 111 2 24556766555444 45566666666666542211  1111 24 888


Q ss_pred             HHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCcccc
Q 008257           82 INIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITV  161 (572)
Q Consensus        82 v~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~  161 (572)
                      .+++++.++.+|..|+.++..++..-..  .......+|.|..++...     ...+|..|+.++..++..-..      
T Consensus       170 ~~l~~D~~~~VR~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~l~~d~-----~~~vr~~a~~~l~~i~~~~~~------  236 (588)
T d1b3ua_         170 RNLCSDDTPMVRRAAASKLGEFAKVLEL--DNVKSEIIPMFSNLASDE-----QDSVRLLAVEACVNIAQLLPQ------  236 (588)
T ss_dssp             HHHHTCSCHHHHHHHHHHHHHHHHTSCH--HHHHHTHHHHHHHHHTCS-----CHHHHTTHHHHHHHHHHHSCH------
T ss_pred             HHHhccCCHHHHHHHHHHHHHHHHHhcH--HHHHHHHHHHHHHHhcCC-----chhhHHHHHHHHHHhhccCCH------
Confidence            8999999999999999999999975332  223345567777777543     378899999999999764211      


Q ss_pred             CCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHH
Q 008257          162 GPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELI  241 (572)
Q Consensus       162 ~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L  241 (572)
                           .-.....++.+..++.+.++.++..++.+|..++..-.      ..+.....++.+..++.+.++++|..|+..+
T Consensus       237 -----~~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~------~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l  305 (588)
T d1b3ua_         237 -----EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVG------PEITKTDLVPAFQNLMKDCEAEVRAAASHKV  305 (588)
T ss_dssp             -----HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC------HHHHHHTHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhh------hhhhhhhhhHHHHHHHhccchHHHHHHHHHH
Confidence                 11234567888888888999999999999988875321      1122345789999999999999999999999


Q ss_pred             HHcCCCCChhHHH-HHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccC
Q 008257          242 QNLSPHMGHELAD-ALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLG  320 (572)
Q Consensus       242 ~~Ls~~~~~~~~~-~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~  320 (572)
                      ..++...+..... ....  ..++.+...+.+.+.  .++..++..+..++..   ....-.....+|.+..++++    
T Consensus       306 ~~~~~~l~~~~~~~~~~~--~i~~~l~~~~~d~~~--~vr~~~~~~l~~~~~~---~~~~~~~~~l~p~l~~~l~d----  374 (588)
T d1b3ua_         306 KEFCENLSADCRENVIMS--QILPCIKELVSDANQ--HVKSALASVIMGLSPI---LGKDNTIEHLLPLFLAQLKD----  374 (588)
T ss_dssp             HHHHHTSCTTTHHHHHHH--THHHHHHHHHTCSCH--HHHHHHHTTGGGGHHH---HCHHHHHHHTHHHHHHHHTC----
T ss_pred             HHHHHHHhhhhhhhhhHH--HHHHHHHHhhcCCCh--HHHHHHHHHHhhhhhc---cchhHHHHHHHHHHHHHHHh----
Confidence            8887543222111 2222  467788888877764  7888887777776431   11111223457888888875    


Q ss_pred             CCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCC
Q 008257          321 ETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPE  400 (572)
Q Consensus       321 ~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~  400 (572)
                            ....++..++..+..+....  ....    .....+|.+.+++++. ++.+|..++.++..++..-...     
T Consensus       375 ------~~~~v~~~~~~~l~~~~~~~--~~~~----~~~~ll~~l~~~~~d~-~~~~r~~~~~~l~~l~~~~~~~-----  436 (588)
T d1b3ua_         375 ------ECPEVRLNIISNLDCVNEVI--GIRQ----LSQSLLPAIVELAEDA-KWRVRLAIIEYMPLLAGQLGVE-----  436 (588)
T ss_dssp             ------SCHHHHHHHHTTCHHHHHHS--CHHH----HHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCGG-----
T ss_pred             ------hhhhhhhHHHHHHHHHHhhc--chhh----hhhHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHcChH-----
Confidence                  23455666666665554321  2211    1234678999999998 8999999999998886532100     


Q ss_pred             CCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhh
Q 008257          401 LPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQG  480 (572)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~  480 (572)
                                                            .......+.+..+|.++...|+..|+.+|+.|+..-.     
T Consensus       437 --------------------------------------~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~-----  473 (588)
T d1b3ua_         437 --------------------------------------FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFG-----  473 (588)
T ss_dssp             --------------------------------------GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC-----
T ss_pred             --------------------------------------hHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhC-----
Confidence                                                  0122356778888999999999999999999985311     


Q ss_pred             HHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcchhhhhhhcCCCCchHHHHHHhhcCCchhHHHHHHHHHhhcc
Q 008257          481 VMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHIDK  560 (572)
Q Consensus       481 ~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~~  560 (572)
                      .... ...-++.+.+++ .+++...|..++.++..+...-. ...+..  .+.+.|++++.+..+.||..|+++|..+..
T Consensus       474 ~~~~-~~~i~~~l~~~~-~~~~~~~R~~~~~~l~~l~~~~~-~~~~~~--~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~  548 (588)
T d1b3ua_         474 KEWA-HATIIPKVLAMS-GDPNYLHRMTTLFCINVLSEVCG-QDITTK--HMLPTVLRMAGDPVANVRFNVAKSLQKIGP  548 (588)
T ss_dssp             HHHH-HHHTHHHHHHTT-TCSCHHHHHHHHHHHHHHHHHHH-HHHHHH--HTHHHHHHGGGCSCHHHHHHHHHHHHHHGG
T ss_pred             cHHH-HHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHcC-hHHHHH--HHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            1111 122456777777 58888888888888888864311 011111  233489999999999999999999999987


Q ss_pred             cCCC
Q 008257          561 IPNF  564 (572)
Q Consensus       561 ~~~~  564 (572)
                      ..+.
T Consensus       549 ~~~~  552 (588)
T d1b3ua_         549 ILDN  552 (588)
T ss_dssp             GSCH
T ss_pred             HcCc
Confidence            5443

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.18  E-value=3.8e-09  Score=100.45  Aligned_cols=258  Identities=11%  Similarity=0.090  Sum_probs=188.0

Q ss_pred             HcCCcHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhHHHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHH
Q 008257           34 ENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVL  113 (572)
Q Consensus        34 ~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~i  113 (572)
                      +..-.+.|+++|.++++.+|..|+.+|..+..         +..+|.|+++|+++++.++..|+.+|..+.........+
T Consensus        17 ~~~~~~~L~~~L~d~~~~vR~~A~~~L~~~~~---------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~~~   87 (276)
T d1oyza_          17 KKLNDDELFRLLDDHNSLKRISSARVLQLRGG---------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNV   87 (276)
T ss_dssp             HTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC---------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHH
T ss_pred             ccCCHHHHHHHhcCCCHHHHHHHHHHHHhhCC---------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccccch
Confidence            34556789999999999999999999986642         123499999999999999999999999987654443332


Q ss_pred             HHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHH
Q 008257          114 IHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLL  193 (572)
Q Consensus       114 v~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~  193 (572)
                           ++.|...+.+.    .++.++..|+.+|.+++....             ......++.+...+.+..+.++..++
T Consensus        88 -----~~~l~~~~l~d----~~~~vr~~a~~aL~~~~~~~~-------------~~~~~~~~~l~~~~~d~~~~vr~~a~  145 (276)
T d1oyza_          88 -----FNILNNMALND----KSACVRATAIESTAQRCKKNP-------------IYSPKIVEQSQITAFDKSTNVRRATA  145 (276)
T ss_dssp             -----HHHHHHHHHHC----SCHHHHHHHHHHHHHHHHHCG-------------GGHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred             -----HHHHHHHHhcC----CChhHHHHHHHHHHHHccccc-------------hhhHHHHHHHHHHhcCcchHHHHHHH
Confidence                 44566655431    348899999999999986432             23355788888888888999998888


Q ss_pred             HHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccC
Q 008257          194 QVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISEN  273 (572)
Q Consensus       194 ~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~  273 (572)
                      .++..+.              ....++.+..++...+..++..+..++..+.....           ..++.++..+..+
T Consensus       146 ~~l~~~~--------------~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~  200 (276)
T d1oyza_         146 FAISVIN--------------DKATIPLLINLLKDPNGDVRNWAAFAININKYDNS-----------DIRDCFVEMLQDK  200 (276)
T ss_dssp             HHHHTC-----------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH-----------HHHHHHHHHTTCS
T ss_pred             HHHhhcc--------------hHHHHHHHHHhcccccchhhhhHHHHHHhhhcccc-----------ccchhhhhhhhhh
Confidence            8776543              24567888999998888888888888877654421           1234556666666


Q ss_pred             CCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHH
Q 008257          274 VGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAI  353 (572)
Q Consensus       274 ~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~  353 (572)
                      +.  .++..+..++..+.           ...+++.|+..+.+.            .++..++.+|..+.     ++   
T Consensus       201 ~~--~~~~~~~~al~~~~-----------~~~~~~~L~~~l~d~------------~vr~~a~~aL~~ig-----~~---  247 (276)
T d1oyza_         201 NE--EVRIEAIIGLSYRK-----------DKRVLSVLCDELKKN------------TVYDDIIEAAGELG-----DK---  247 (276)
T ss_dssp             CH--HHHHHHHHHHHHTT-----------CGGGHHHHHHHHTSS------------SCCHHHHHHHHHHC-----CG---
T ss_pred             hh--hhhhhhccccchhh-----------hhhhHHHHHHHhCCh------------HHHHHHHHHHHHcC-----CH---
Confidence            64  77777777776643           235678888888752            13457888888875     43   


Q ss_pred             HHHHHcCchHHHHHHhccCCcHHHHHHHHHHHH
Q 008257          354 ALCCEHNLAALFIELLQSNGLDKVQMVSATALE  386 (572)
Q Consensus       354 ~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~  386 (572)
                            .++|.|..+|..+.+..++..|..+|.
T Consensus       248 ------~~~~~L~~~l~~~~d~~vr~~A~~~L~  274 (276)
T d1oyza_         248 ------TLLPVLDTMLYKFDDNEIITSAIDKLK  274 (276)
T ss_dssp             ------GGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred             ------HHHHHHHHHHccCCCHHHHHHHHHHHc
Confidence                  467999999987647789988888763

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=6.5e-09  Score=116.27  Aligned_cols=427  Identities=14%  Similarity=0.101  Sum_probs=241.1

Q ss_pred             HHHHHHHHHHhccCcchhHHHHhhhHHHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHH--HcCChHHHHHHHhccC
Q 008257           53 KLSLAAFLGDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLI--HAGILPPLVKDLFTVG  130 (572)
Q Consensus        53 ~~~aa~~L~~l~~~~~~k~~i~~~g~~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv--~~G~i~~Lv~lL~s~~  130 (572)
                      +..++.+|..++..-..  .+...-.+.+.+.+.+++...|+.|+.+|..++....  +.+.  -...+|.|+..|++. 
T Consensus       374 r~~a~~~L~~l~~~~~~--~il~~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~--~~~~~~l~~li~~l~~~l~d~-  448 (888)
T d1qbkb_         374 RKCSAAALDVLANVYRD--ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCM--QGMIPYLPELIPHLIQCLSDK-  448 (888)
T ss_dssp             HHHHHHHSTTTTTTCCS--SSHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSH--HHHTTTHHHHHHHHHHHTTSS-
T ss_pred             HHHHHHHHhhHhhhhHH--HHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhhhHH--HHhcccchhhhHHHHHhccCC-
Confidence            44455566555542111  1111112677788889999999999999999885422  1221  123467777777643 


Q ss_pred             CCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHH
Q 008257          131 SNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVV  210 (572)
Q Consensus       131 ~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~  210 (572)
                          .+.+|..|+|+|+.++......       .. .-....+++.++..+.++++.+|..|+++|..++.....  ...
T Consensus       449 ----~~~Vr~~a~~~l~~~~~~~~~~-------~~-~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~--~l~  514 (888)
T d1qbkb_         449 ----KALVRSITCWTLSRYAHWVVSQ-------PP-DTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACT--ELV  514 (888)
T ss_dssp             ----CHHHHHHHHHHHHHTHHHHHSS-------CH-HHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTT--SSG
T ss_pred             ----CHHHHHHHHHHHHHHHHHhhhh-------hh-hhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh--hhh
Confidence                4889999999999987521100       00 001245788899999999999999999999988753211  011


Q ss_pred             HHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHH-HHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhc
Q 008257          211 SAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELA-DALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAE  289 (572)
Q Consensus       211 ~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~-~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~  289 (572)
                      ..+  ...++.|+..+...+...+..+..++..++...+.... ..+..  ..++.++.....-.+..........+++.
T Consensus       515 p~~--~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~--~l~~~l~~~~~~~~~~~~~~~~~le~l~~  590 (888)
T d1qbkb_         515 PYL--AYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQ--MLMPPLIQKWNMLKDEDKDLFPLLECLSS  590 (888)
T ss_dssp             GGH--HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHH--HHHHHHHHHHTTSCTTCTTHHHHHHHHHH
T ss_pred             hHH--HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHH--HHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence            110  12456777777777777777667777766532111110 01111  13344444443221100111122222222


Q ss_pred             ----CCCCcHHHHHHHHhCCChHHHHHHHhh--------hccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHH
Q 008257          290 ----LPERDLGLTRQMLDEGAFGLIFSRVKS--------IQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCC  357 (572)
Q Consensus       290 ----L~~~~~~~~~~l~~~g~l~~Lv~lL~~--------~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~  357 (572)
                          +...-......+     ++.+++++..        .... .........+...++.++..+...+  .+.....+.
T Consensus       591 i~~~~~~~~~~~~~~~-----~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~~l~~~l--~~~~~~~~~  662 (888)
T d1qbkb_         591 VATALQSGFLPYCEPV-----YQRCVNLVQKTLAQAMLNNAQP-DQYEAPDKDFMIVALDLLSGLAEGL--GGNIEQLVA  662 (888)
T ss_dssp             HHHHSTTTTHHHHHHH-----HHHHHHHHHHHHHHHHHHHHCT-TTSCCCCTHHHHHHHHHHHHHHHHH--TTTTHHHHH
T ss_pred             HHHHhHHHHhhhHHHH-----HHHHHHHHHHHHHHHHHHhccc-ccccchhHHHHHHHHHHHHHHHHHh--hhhhhhhhh
Confidence                211111111111     1222222221        0000 0011123344555555555555331  333444555


Q ss_pred             HcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchh
Q 008257          358 EHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETF  437 (572)
Q Consensus       358 ~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~  437 (572)
                      ....++.+...+++. ++.++..|..+++.++........                                       .
T Consensus       663 ~~~l~~~l~~~l~~~-~~~vr~~a~~llgdl~~~~~~~~~---------------------------------------~  702 (888)
T d1qbkb_         663 RSNILTLMYQCMQDK-MPEVRQSSFALLGDLTKACFQHVK---------------------------------------P  702 (888)
T ss_dssp             TSCHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHCGGGTG---------------------------------------G
T ss_pred             HhhHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHhhhHHHH---------------------------------------H
Confidence            667889999999988 899999999999888764332110                                       0


Q ss_pred             hhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCc-cchhhHHHHHhcCChHHHHHHHhhcCC--HHHHHHHHHHHH
Q 008257          438 CLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGV-DIEQGVMVLCEAQGIKPILDVLLEKRT--ENLQRRAVWVVE  514 (572)
Q Consensus       438 ~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~-~~~~~~~~i~~~g~i~~L~~lL~~~~~--~~~~~~a~~~l~  514 (572)
                      ++  ...++.|++-|++....++.+|+++++.++.... .++.....     .++.|+.+++ +++  +.++++++.+|.
T Consensus       703 ~l--~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py~~~-----il~~L~~il~-~~~~~~~v~~n~~~~lg  774 (888)
T d1qbkb_         703 CI--ADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPM-----VLHQLVEIIN-RPNTPKTLLENTAITIG  774 (888)
T ss_dssp             GH--HHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGGSHH-----HHHHHHHHHT-CTTCCHHHHHHHHHHHH
T ss_pred             HH--HHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHhhhhHHH-----HHHHHHHHHc-CCCccHHHHHHHHHHHH
Confidence            11  1266788888888889999999999999986432 22222222     3567888884 543  569999999999


Q ss_pred             HHHcc-hhhhhhhcCCCCchHHHHHHhhc-CCchhHHHHHHHHHhhcc
Q 008257          515 RILRT-DDIAYEVSGDPNVSTALVDAFQH-ADYRTRQIAERALKHIDK  560 (572)
Q Consensus       515 ~l~~~-~~~~~~~~~~~~~~~~Lv~ll~~-~~~~~~~~Aa~aL~~L~~  560 (572)
                      ++... ++....+..  .+.+++...|.. .|.+.++.|-..|..+-.
T Consensus       775 rl~~~~p~~~~~~l~--~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~  820 (888)
T d1qbkb_         775 RLGYVCPQEVAPMLQ--QFIRPWCTSLRNIRDNEEKDSAFRGICTMIS  820 (888)
T ss_dssp             HHHHHCHHHHGGGGG--GTHHHHHHHHTTSCCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHCHHHHHhhHH--HHHHHHHHHhccCCCcHHHHHHHHHHHHHHH
Confidence            99843 443332222  243466666655 566767777777776654

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.00  E-value=4.8e-08  Score=92.49  Aligned_cols=257  Identities=12%  Similarity=0.036  Sum_probs=178.8

Q ss_pred             HcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHH
Q 008257          115 HAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQ  194 (572)
Q Consensus       115 ~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~  194 (572)
                      +....+.|+++|+++     ++.+|..|+.+|..+..                   +..++.|++++++++++++..|+.
T Consensus        17 ~~~~~~~L~~~L~d~-----~~~vR~~A~~~L~~~~~-------------------~~~~~~l~~~l~d~~~~vr~~a~~   72 (276)
T d1oyza_          17 KKLNDDELFRLLDDH-----NSLKRISSARVLQLRGG-------------------QDAVRLAIEFCSDKNYIRRDIGAF   72 (276)
T ss_dssp             HTSCHHHHHHHTTCS-----SHHHHHHHHHHHHHHCC-------------------HHHHHHHHHHHTCSSHHHHHHHHH
T ss_pred             ccCCHHHHHHHhcCC-----CHHHHHHHHHHHHhhCC-------------------HhHHHHHHHHHcCCCHHHHHHHHH
Confidence            345667889999864     38999999999987731                   457999999999999999999999


Q ss_pred             HHHHccCCCCccHHHHHHHHhcCChHHHH-HHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccC
Q 008257          195 VLVGLTSSPTTVLSVVSAIKSSGATISLV-QFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISEN  273 (572)
Q Consensus       195 aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv-~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~  273 (572)
                      +|..+......    ..     ..++.|. .+++++++.++..|+.+|..+..+.....     .  ..++.+...+..+
T Consensus        73 aL~~l~~~~~~----~~-----~~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~-----~--~~~~~l~~~~~d~  136 (276)
T d1oyza_          73 ILGQIKICKKC----ED-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS-----P--KIVEQSQITAFDK  136 (276)
T ss_dssp             HHHHSCCCTTT----HH-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH-----H--HHHHHHHHHTTCS
T ss_pred             HHHHhcccccc----cc-----chHHHHHHHHhcCCChhHHHHHHHHHHHHccccchhh-----H--HHHHHHHHHhcCc
Confidence            99998765432    11     1233333 35677889999999999998875432111     1  2456777777766


Q ss_pred             CCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHH
Q 008257          274 VGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAI  353 (572)
Q Consensus       274 ~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~  353 (572)
                      +.  .++..|+.+++...           +...++.+..++.+.          ...+...+..++..+..   ..+.  
T Consensus       137 ~~--~vr~~a~~~l~~~~-----------~~~~~~~l~~l~~~~----------~~~~~~~~~~~~~~~~~---~~~~--  188 (276)
T d1oyza_         137 ST--NVRRATAFAISVIN-----------DKATIPLLINLLKDP----------NGDVRNWAAFAININKY---DNSD--  188 (276)
T ss_dssp             CH--HHHHHHHHHHHTC--------------CCHHHHHHHHTCS----------SHHHHHHHHHHHHHHTC---CCHH--
T ss_pred             ch--HHHHHHHHHHhhcc-----------hHHHHHHHHHhcccc----------cchhhhhHHHHHHhhhc---cccc--
Confidence            64  78888888777643           235567777777652          22334445555554442   1222  


Q ss_pred             HHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCc
Q 008257          354 ALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSL  433 (572)
Q Consensus       354 ~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~  433 (572)
                             ..+.++..+... +..++..++.++..+.                                            
T Consensus       189 -------~~~~~~~~~~~~-~~~~~~~~~~al~~~~--------------------------------------------  216 (276)
T d1oyza_         189 -------IRDCFVEMLQDK-NEEVRIEAIIGLSYRK--------------------------------------------  216 (276)
T ss_dssp             -------HHHHHHHHTTCS-CHHHHHHHHHHHHHTT--------------------------------------------
T ss_pred             -------cchhhhhhhhhh-hhhhhhhhccccchhh--------------------------------------------
Confidence                   345677788887 8889999888886542                                            


Q ss_pred             cchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHH
Q 008257          434 KETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVV  513 (572)
Q Consensus       434 ~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l  513 (572)
                             ...++++|++.|.+  +.++..|+.+|+.+..              .++++.|.++|..++++.++..|+..|
T Consensus       217 -------~~~~~~~L~~~l~d--~~vr~~a~~aL~~ig~--------------~~~~~~L~~~l~~~~d~~vr~~A~~~L  273 (276)
T d1oyza_         217 -------DKRVLSVLCDELKK--NTVYDDIIEAAGELGD--------------KTLLPVLDTMLYKFDDNEIITSAIDKL  273 (276)
T ss_dssp             -------CGGGHHHHHHHHTS--SSCCHHHHHHHHHHCC--------------GGGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred             -------hhhhHHHHHHHhCC--hHHHHHHHHHHHHcCC--------------HHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence                   23478999999985  4588899999987741              136788888896566888998888776


Q ss_pred             H
Q 008257          514 E  514 (572)
Q Consensus       514 ~  514 (572)
                      .
T Consensus       274 ~  274 (276)
T d1oyza_         274 K  274 (276)
T ss_dssp             T
T ss_pred             c
Confidence            4

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=1.7e-08  Score=112.89  Aligned_cols=355  Identities=11%  Similarity=0.040  Sum_probs=203.9

Q ss_pred             CCCCCCHHHHHHHHHHHHhhccCc-chHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhcc--CcchhHHHHhhhHH
Q 008257            3 SSKSENLLTVEKAEKTLANLEKCE-NNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLAL--NSDVKVLVARTVGS   79 (572)
Q Consensus         3 ~~~s~~~~~~~~A~~~L~~L~~~~-~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~--~~~~k~~i~~~g~~   79 (572)
                      +++|+++..++.|..++..++... +...... ...++.|+..|++.++.+|..++++|++++.  .+.........-.+
T Consensus       403 ~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l-~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~  481 (888)
T d1qbkb_         403 LLFHHEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMT  481 (888)
T ss_dssp             TTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTH-HHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHH
T ss_pred             hhccchhHHHHHHHHHhhhhhhhHHHHhcccc-hhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHH
Confidence            467889999999999999887632 2211111 1246778888899999999999999999875  22222223333348


Q ss_pred             HHHHhcccCCHHHHHHHHHHHHHhhcCC--CcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCC
Q 008257           80 CLINIMKSGNMQAREAALKALNQISSCE--PSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFD  157 (572)
Q Consensus        80 ~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~--~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~  157 (572)
                      .++..+.++++.+|..|+++|.++....  .-...  -...++.|+..+...     ....+..+..++..++.......
T Consensus       482 ~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~--~~~il~~l~~~l~~~-----~~~~~~~~~~al~~l~~~~~~~~  554 (888)
T d1qbkb_         482 ELLKRILDSNKRVQEAACSAFATLEEEACTELVPY--LAYILDTLVFAFSKY-----QHKNLLILYDAIGTLADSVGHHL  554 (888)
T ss_dssp             HHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGG--HHHHHHHHHHHTTTC-----CHHHHHHHHHHHHHHHHHHGGGG
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhH--HHHHHHHHHHHHhhh-----hHHHHHHHHHHHHHHHHhhhccc
Confidence            8899888899999999999999998531  11111  122345556655532     13444455556665553211000


Q ss_pred             ccccCCCccccchhhhHHHHHHHHh------------------------c------------------------------
Q 008257          158 SITVGPDNQTLVSEDIVHNLLHLIS------------------------N------------------------------  183 (572)
Q Consensus       158 ~~~~~~~~~~l~~~~~i~~Lv~lL~------------------------~------------------------------  183 (572)
                          ..   .-.....++.++..+.                        .                              
T Consensus       555 ----~~---~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  627 (888)
T d1qbkb_         555 ----NK---PEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQ  627 (888)
T ss_dssp             ----CS---HHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ----cc---hHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence                00   0000011111111111                        0                              


Q ss_pred             ------CChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHh
Q 008257          184 ------TGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALR  257 (572)
Q Consensus       184 ------~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~  257 (572)
                            .+.++...++.++..+...-.  ......+.....++.+...+.+.++++|..|..++..++...+..+...+.
T Consensus       628 ~~~~~~~~~~~~~~~l~~l~~l~~~l~--~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~  705 (888)
T d1qbkb_         628 PDQYEAPDKDFMIVALDLLSGLAEGLG--GNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIA  705 (888)
T ss_dssp             TTTSCCCCTHHHHHHHHHHHHHHHHHT--TTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHH
T ss_pred             cccccchhHHHHHHHHHHHHHHHHHhh--hhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence                  011112222222222221000  001111222334566777778888999999999998887654444322222


Q ss_pred             cccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHH
Q 008257          258 GAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLS  337 (572)
Q Consensus       258 ~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~  337 (572)
                         ..++.|+.-|.++..  .++..|+++++.++....+..+..+ ...++.|+.++++..        ....++++++.
T Consensus       706 ---~~~~~l~~~L~~~~~--~v~~~a~~~ig~ia~~~~~~~~py~-~~il~~L~~il~~~~--------~~~~v~~n~~~  771 (888)
T d1qbkb_         706 ---DFMPILGTNLNPEFI--SVCNNATWAIGEISIQMGIEMQPYI-PMVLHQLVEIINRPN--------TPKTLLENTAI  771 (888)
T ss_dssp             ---HHHHHHHHTCCGGGH--HHHHHHHHHHHHHHHHTGGGGGGGS-HHHHHHHHHHHTCTT--------CCHHHHHHHHH
T ss_pred             ---HHHHHHHHHhCcCCH--HHHHHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHcCCC--------ccHHHHHHHHH
Confidence               256677777776663  7888899988877542211111111 145677788886522        24568899999


Q ss_pred             HHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhc
Q 008257          338 VLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLES  392 (572)
Q Consensus       338 aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~  392 (572)
                      +|++++..   +|+..... -..++++++.-|....+.+-|+.|..+++.+....
T Consensus       772 ~lgrl~~~---~p~~~~~~-l~~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~~  822 (888)
T d1qbkb_         772 TIGRLGYV---CPQEVAPM-LQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVN  822 (888)
T ss_dssp             HHHHHHHH---CHHHHGGG-GGGTHHHHHHHHTTSCCSHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHH---CHHHHHhh-HHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHC
Confidence            99999864   66533211 13467888888877446677889999999887643

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=1.6e-07  Score=107.90  Aligned_cols=494  Identities=13%  Similarity=0.080  Sum_probs=280.1

Q ss_pred             CCCCCHHHHHHHHHHHHhhccCcch-HHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhHHHHH
Q 008257            4 SKSENLLTVEKAEKTLANLEKCENN-VRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLI   82 (572)
Q Consensus         4 ~~s~~~~~~~~A~~~L~~L~~~~~n-~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~~~Lv   82 (572)
                      ++|.|+..+..|+.-|.+.-..+.. ...-.....++.|++.|.+.+.++|..|..+|+.++..-..  .....-.+.|+
T Consensus        12 ~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~--~~~~~l~~~L~   89 (1207)
T d1u6gc_          12 MTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--YQVETIVDTLC   89 (1207)
T ss_dssp             TTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--HHHHHHHHHHH
T ss_pred             cCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcH--hhHHHHHHHHH
Confidence            3789999999998766654221110 00000112567899999999999999999999998763221  11222237888


Q ss_pred             HhcccCCHHHHHHHHHHHHHhhcC-C-Cc----HHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCC
Q 008257           83 NIMKSGNMQAREAALKALNQISSC-E-PS----AKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDF  156 (572)
Q Consensus        83 ~lL~s~~~~~~~~A~~aL~~Ls~~-~-~~----~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~  156 (572)
                      ..+.+++.+.+..+..+|..+... + ..    ....+-...++.|...+...    ....++..|..+|..+....+..
T Consensus        90 ~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~~v~~~al~~l~~l~~~~g~~  165 (1207)
T d1u6gc_          90 TNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQ----EDVSVQLEALDIMADMLSRQGGL  165 (1207)
T ss_dssp             HHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCC----SCHHHHHHHHHHHHHHHHHTCSS
T ss_pred             HHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCC----CCHHHHHHHHHHHHHHHHHhhHh
Confidence            878778888888888888876532 1 11    11111222333344433332    34678899999999998753321


Q ss_pred             CccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcC-CCHHHHH
Q 008257          157 DSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEA-PQNDLRL  235 (572)
Q Consensus       157 ~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~  235 (572)
                      -   .      -....+++.|+..+.++.+.++..|+.+|..+......  ..     -...++.++..+.. .+...+.
T Consensus       166 l---~------~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~--~~-----~~~~~~~ll~~l~~~~~~~~~~  229 (1207)
T d1u6gc_         166 L---V------NFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN--IV-----FVDLIEHLLSELSKNDSMSTTR  229 (1207)
T ss_dssp             C---T------TTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-----------CTTHHHHHHHHHHHTCSSCSCT
T ss_pred             h---H------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCH--HH-----HHHHHHHHHHHHccCCCHHHHH
Confidence            0   0      01345788888888999999999999999999875432  11     12346677766643 3455677


Q ss_pred             HHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHH-HHHHHHhCCChHHHHHHH
Q 008257          236 ASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLG-LTRQMLDEGAFGLIFSRV  314 (572)
Q Consensus       236 ~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~-~~~~l~~~g~l~~Lv~lL  314 (572)
                      .++.++..+++..+......+   +..++.+++.+..+++  +++..+..++..+....+. ....+  ...++.++..+
T Consensus       230 ~~~~~l~~l~~~~~~~~~~~l---~~i~~~l~~~l~~~~~--~~r~~al~~l~~l~~~~~~~~~~~~--~~ii~~~l~~l  302 (1207)
T d1u6gc_         230 TYIQCIAAISRQAGHRIGEYL---EKIIPLVVKFCNVDDD--ELREYCIQAFESFVRRCPKEVYPHV--STIINICLKYL  302 (1207)
T ss_dssp             THHHHHHHHHHHSSGGGTTSC---TTHHHHHHHHHSSCCT--TTHHHHHHHHHHHHHCTTCCCHHHH--HHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHcchhhHHHH---HHHHHHHHHHhcCccH--HHHHHHHHHHHHHHHhChhhhhhhH--HHHHHHHHHHH
Confidence            778888888755443321111   1467888888887775  6777666666554321111 10000  00011111111


Q ss_pred             hhhcc----------------C-C---------C-CCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHH
Q 008257          315 KSIQL----------------G-E---------T-RGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIE  367 (572)
Q Consensus       315 ~~~~~----------------~-~---------~-~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~  367 (572)
                      .....                + .         . ........++..++.+|..+...   .++...... ..++|.|+.
T Consensus       303 ~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~---~~~~l~~~~-~~~~~~L~~  378 (1207)
T d1u6gc_         303 TYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVST---RHEMLPEFY-KTVSPALIS  378 (1207)
T ss_dssp             CCC------------------------------------CTTHHHHHHHHHHHHHHTT---CCTTHHHHH-TTTHHHHHS
T ss_pred             hcCcchhhhhHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHH---HHHHHHHHH-HHHHHHHHH
Confidence            10000                0 0         0 00001223556677777776643   444333332 357899999


Q ss_pred             HhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHH
Q 008257          368 LLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEK  447 (572)
Q Consensus       368 lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~  447 (572)
                      .+... .+.+|..+..++..+.............+.         ..  ..   ...        ......-.-...++.
T Consensus       379 ~l~d~-~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~---------~~--~~---~~~--------~~~~l~~~~~~i~~~  435 (1207)
T d1u6gc_         379 RFKER-EENVKADVFHAYLSLLKQTRPVQSWLCDPD---------AM--EQ---GET--------PLTMLQSQVPNIVKA  435 (1207)
T ss_dssp             TTSCS-SSHHHHHHHHHHHHHHHHHCCC--------------------------CCC--------HHHHHHHHTTHHHHH
T ss_pred             HhcCC-chHHHHHHHHHHHHHHHhccchhhhhhchH---------HH--Hh---hcc--------hHHHHHHHhHHHHHH
Confidence            99888 889999999999888765433211100000         00  00   000        000000011235677


Q ss_pred             HHHhhcCCCHhHHHHHHHHHHHhhhcCc-cchhhHHHHHhcCChHHHHHHHhh-cCCHHHHHHHHHHHHHHHcc--hhhh
Q 008257          448 LIALLDHTNEKVVEASLAALSTVIDDGV-DIEQGVMVLCEAQGIKPILDVLLE-KRTENLQRRAVWVVERILRT--DDIA  523 (572)
Q Consensus       448 Lv~lL~~~~~~v~~~A~~aL~~l~~~~~-~~~~~~~~i~~~g~i~~L~~lL~~-~~~~~~~~~a~~~l~~l~~~--~~~~  523 (572)
                      +.+.+.+.+..++..+..++..+..... ........     -++.+...+.+ ..+..++..+..++..++..  .+.-
T Consensus       436 l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~-----~~~~i~~~l~~~~~~~~~~~~al~~l~~l~~~~~~~~~  510 (1207)
T d1u6gc_         436 LHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPV-----LVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVF  510 (1207)
T ss_dssp             HHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHH-----HHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGG
T ss_pred             HHHHhcCCchhHHHHHHHHHHHHHHHcchHHHHhhHh-----hHHHHHHHHhcccchhHHHHHHHHHHHHHHHhccHHHH
Confidence            8888889999999999999998875322 11111111     13445555532 23456788888888888743  2322


Q ss_pred             hhhcCCCCchHHHHHHhhcCCchhHHHHHHHHHhhcc
Q 008257          524 YEVSGDPNVSTALVDAFQHADYRTRQIAERALKHIDK  560 (572)
Q Consensus       524 ~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~~  560 (572)
                      ..+..  .+...++..+.+....++..|..++..+..
T Consensus       511 ~~~~~--~l~~~~~~~~~~~~~~i~~~al~~~~~l~~  545 (1207)
T d1u6gc_         511 HPHVQ--ALVPPVVACVGDPFYKITSEALLVTQQLVK  545 (1207)
T ss_dssp             HHHHT--TTHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHH--hhhhhHHHHHccccHHHHHHHHHHHHHHHH
Confidence            33332  244577788888888888888887776655

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=6e-07  Score=90.72  Aligned_cols=392  Identities=10%  Similarity=0.093  Sum_probs=224.9

Q ss_pred             CCCCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccC--CHHHHHHHHHHHHHhcc-Cc-chhHHH------
Q 008257            4 SKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEG--PQETKLSLAAFLGDLAL-NS-DVKVLV------   73 (572)
Q Consensus         4 ~~s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~--~~~~~~~aa~~L~~l~~-~~-~~k~~i------   73 (572)
                      +.|.|.+.+..|...|..+..++  -     .+++..|...+.+.  +..+|..|+..|.+... .. ..+...      
T Consensus         9 ~~s~d~~~r~~A~~~L~~~~~~~--~-----~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~~~~~~~   81 (458)
T d1ibrb_           9 TVSPDRLELEAAQKFLERAAVEN--L-----PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLA   81 (458)
T ss_dssp             TTCSCHHHHHHHHHHHHHHHHHH--H-----HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHT
T ss_pred             HhCcCHHHHHHHHHHHHHHHhcC--c-----hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhHHhhhhcc
Confidence            45789999999999999887632  1     12356666667554  45678888888887654 22 222111      


Q ss_pred             ----HhhhH-HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHH
Q 008257           74 ----ARTVG-SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILAN  148 (572)
Q Consensus        74 ----~~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~n  148 (572)
                          ....+ ..+++.+.++++. +..++.++..++...-..  -.-.+.++.|+..+.+..   .+...++.+..++..
T Consensus        82 l~~~~~~~i~~~ll~~~~~~~~~-~~~~~~~~~~i~~~~~~~--~~~~~~~~~l~~~l~~~~---~~~~~~~~~l~~l~~  155 (458)
T d1ibrb_          82 IDANARREVKNYVLQTLGTETYR-PSSASQCVAGIACAEIPV--NQWPELIPQLVANVTNPN---STEHMKESTLEAIGY  155 (458)
T ss_dssp             SCHHHHHHHHHHHHHHTTCCCSS-SCSHHHHHHHHHHHHGGG--TCCTTHHHHHHHHHHCTT---CCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhccCCCcHH-HHHHHHHHHHHHHHhCCc--ccCcchhHHHHHHHHhhc---chHHHHHHHHHHHHH
Confidence                12245 6678888776543 334455555555321000  001356888888887642   346678888899988


Q ss_pred             HHhcCCCCCccccCCCccccchhhhHHHHHHHHhc--CChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHh
Q 008257          149 VVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISN--TGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFV  226 (572)
Q Consensus       149 la~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~--~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL  226 (572)
                      ++.......        ..-.....++.++..+.+  .+.+++..+++++..+......  ............+.+..++
T Consensus       156 ~~~~~~~~~--------~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~--~~~~~~~~~~~~~~l~~~~  225 (458)
T d1ibrb_         156 ICQDIDPEQ--------LQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA--NFDKESERHFIMQVVCEAT  225 (458)
T ss_dssp             HHHHSCGGG--------TGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH--HHTSHHHHHHHHHHHHHHT
T ss_pred             HHhhccchh--------hhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhh--hhhhHHHHHHhHhhHHHHh
Confidence            876432110        111234567888888875  4567899999999988765321  0001111223566777888


Q ss_pred             cCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHH-----
Q 008257          227 EAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQM-----  301 (572)
Q Consensus       227 ~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l-----  301 (572)
                      .+++++++..++.+|..+....+..+...+..  ...+.+...+.+.++  +++..|+..+..++..........     
T Consensus       226 ~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~--~~~~~a~~~l~~i~~~~~~~~~~~~~~~~  301 (458)
T d1ibrb_         226 QCPDTRVRVAALQNLVKIMSLYYQYMETYMGP--ALFAITIEAMKSDID--EVALQGIEFWSNVCDEEMDLAIEASEAAE  301 (458)
T ss_dssp             TCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTT--THHHHHHHHHHCSSH--HHHHHHHHHHHHHHHHHHHHHHHHCCTTC
T ss_pred             cCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHH--HHHHHHHHHhccccH--HHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence            88899999999999988875433222111111  112223344445443  677777776665543111110000     


Q ss_pred             ---------------HhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHH
Q 008257          302 ---------------LDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFI  366 (572)
Q Consensus       302 ---------------~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv  366 (572)
                                     .-...+|.+...+.+......   .....+...+..++..++... .+. ...     .++|.+.
T Consensus       302 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~---~~~~~~~~~a~~~l~~l~~~~-~~~-~~~-----~l~~~i~  371 (458)
T d1ibrb_         302 QGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDD---DDDWNPCKAAGVCLMLLATCC-EDD-IVP-----HVLPFIK  371 (458)
T ss_dssp             SSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCC---TTCCSHHHHHHHHHHHHHHHT-TTT-HHH-----HHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhc---cccccHHHHHHHHHHHHHHhc-cHh-hhh-----HHHHHHH
Confidence                           001122333333322110000   112234555656666555331 122 211     2567788


Q ss_pred             HHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchH
Q 008257          367 ELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVE  446 (572)
Q Consensus       367 ~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~  446 (572)
                      +.++++ +..+|..|..+|+.++.......-              .                       .   .-...++
T Consensus       372 ~~l~s~-~~~~r~aal~~l~~i~~~~~~~~~--------------~-----------------------~---~l~~i~~  410 (458)
T d1ibrb_         372 EHIKNP-DWRYRDAAVMAFGCILEGPEPSQL--------------K-----------------------P---LVIQAMP  410 (458)
T ss_dssp             HHTTCS-SHHHHHHHHHHHHHTSSSSCTTTT--------------C-----------------------T---TTTTHHH
T ss_pred             HHhcCC-CHHHHHHHHHHHHHHHHhcCHhHH--------------H-----------------------H---HHHHHHH
Confidence            888888 899999999999988753211000              0                       0   0123788


Q ss_pred             HHHHhhcCCCHhHHHHHHHHHHHhhhc
Q 008257          447 KLIALLDHTNEKVVEASLAALSTVIDD  473 (572)
Q Consensus       447 ~Lv~lL~~~~~~v~~~A~~aL~~l~~~  473 (572)
                      .|+.+|+++++.|+.+|+.+|+.++..
T Consensus       411 ~l~~~l~d~~~~VR~~a~~~l~~i~~~  437 (458)
T d1ibrb_         411 TLIELMKDPSVVVRDTAAWTVGRICEL  437 (458)
T ss_dssp             HHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999853

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=2.7e-06  Score=97.44  Aligned_cols=471  Identities=13%  Similarity=0.121  Sum_probs=259.4

Q ss_pred             CCCCCHHHHHHHHHHHHhhccC-cchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhcc--C--c---chhHHHHh
Q 008257            4 SKSENLLTVEKAEKTLANLEKC-ENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLAL--N--S---DVKVLVAR   75 (572)
Q Consensus         4 ~~s~~~~~~~~A~~~L~~L~~~-~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~--~--~---~~k~~i~~   75 (572)
                      ++..+++++..|.+.|..|... ++..   + ...++.|+..+.+++...+..++.+|..+..  .  .   .....+..
T Consensus        54 L~D~~~~Vq~~A~k~l~~l~~~~~~~~---~-~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~  129 (1207)
T d1u6gc_          54 LEDKNGEVQNLAVKCLGPLVSKVKEYQ---V-ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCK  129 (1207)
T ss_dssp             TTCSSHHHHHHHHHHHHHHHTTSCHHH---H-HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHHHHhCcHhh---H-HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHH
Confidence            5677889999999999888763 2221   1 1246778887877888888777777766532  1  1   11122222


Q ss_pred             hhHHHHHHhcc-cCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCC
Q 008257           76 TVGSCLINIMK-SGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGH  154 (572)
Q Consensus        76 ~g~~~Lv~lL~-s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~  154 (572)
                      .-.+.|...+. ..+..++..|+.+|..+.......-.-.....++.|+..|.++     ...+|..|+.+|+.++....
T Consensus       130 ~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~~~~il~~l~~~l~~~-----~~~vR~~A~~~l~~l~~~~~  204 (1207)
T d1u6gc_         130 KITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSP-----RLAVRKRTIIALGHLVMSCG  204 (1207)
T ss_dssp             HHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCS-----SHHHHHHHHHHHHHHTTTC-
T ss_pred             HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHHHHHCC
Confidence            22255555444 3567889999999999876322210001123456666666654     37899999999999986532


Q ss_pred             CCCccccCCCccccchhhhHHHHHHHHh-cCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHH
Q 008257          155 DFDSITVGPDNQTLVSEDIVHNLLHLIS-NTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDL  233 (572)
Q Consensus       155 ~~~~~~~~~~~~~l~~~~~i~~Lv~lL~-~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v  233 (572)
                      +.            .-...++.++..+. +.+...+..++.++..++.....  .....  -...++.++..+..+++++
T Consensus       205 ~~------------~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~--~~~~~--l~~i~~~l~~~l~~~~~~~  268 (1207)
T d1u6gc_         205 NI------------VFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH--RIGEY--LEKIIPLVVKFCNVDDDEL  268 (1207)
T ss_dssp             ---------------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG--GGTTS--CTTHHHHHHHHHSSCCTTT
T ss_pred             HH------------HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcch--hhHHH--HHHHHHHHHHHhcCccHHH
Confidence            11            11346777777665 44555666666666666543211  01100  1356888899999999999


Q ss_pred             HHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhcc-----------------------------------CCCChH
Q 008257          234 RLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISE-----------------------------------NVGISK  278 (572)
Q Consensus       234 ~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~-----------------------------------~~~~~~  278 (572)
                      |+.+..++..+....+.++...+.+   .++.+++.+..                                   .+....
T Consensus       269 r~~al~~l~~l~~~~~~~~~~~~~~---ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~  345 (1207)
T d1u6gc_         269 REYCIQAFESFVRRCPKEVYPHVST---IINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWK  345 (1207)
T ss_dssp             HHHHHHHHHHHHHCTTCCCHHHHHH---HHHHHTTCCCCC------------------------------------CTTH
T ss_pred             HHHHHHHHHHHHHhChhhhhhhHHH---HHHHHHHHHhcCcchhhhhHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHH
Confidence            9999999888764433222111110   11222221110                                   001125


Q ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCC------h--
Q 008257          279 EQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDE------P--  350 (572)
Q Consensus       279 ~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~------~--  350 (572)
                      ++..|+.+|..+....++....+. ...+|.++..+.+.          ...++..++.++..+.......      +  
T Consensus       346 vR~~a~~~L~~l~~~~~~~l~~~~-~~~~~~L~~~l~d~----------~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~  414 (1207)
T d1u6gc_         346 VRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKER----------EENVKADVFHAYLSLLKQTRPVQSWLCDPDA  414 (1207)
T ss_dssp             HHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCS----------SSHHHHHHHHHHHHHHHHHCCC---------
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHhcCC----------chHHHHHHHHHHHHHHHhccchhhhhhchHH
Confidence            677788888776554443323332 35677777776541          2344555655555443110000      0  


Q ss_pred             -----HHHHHHHH--cCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccc
Q 008257          351 -----DAIALCCE--HNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGL  423 (572)
Q Consensus       351 -----~~~~~i~~--~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (572)
                           .....+.+  ..+++.+.+.+++. +..++..+...+..+....+....                          
T Consensus       415 ~~~~~~~~~~l~~~~~~i~~~l~~~l~~~-~~~~r~~~~~~l~~l~~~~~~~l~--------------------------  467 (1207)
T d1u6gc_         415 MEQGETPLTMLQSQVPNIVKALHKQMKEK-SVKTRQCCFNMLTELVNVLPGALT--------------------------  467 (1207)
T ss_dssp             ---CCCHHHHHHHHTTHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHSTTTTG--------------------------
T ss_pred             HHhhcchHHHHHHHhHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHHHcchHHH--------------------------
Confidence                 00111111  23556667777777 888998888888887653321000                          


Q ss_pred             cccccCccCccchhhhhhccchHHHHHhhcC--CCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcC
Q 008257          424 CRLHRGLCSLKETFCLLEGHAVEKLIALLDH--TNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKR  501 (572)
Q Consensus       424 c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~--~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~  501 (572)
                                  . ++  ...++.++..+..  ....++..++..+..+......  ... .-.-..-++.+...+ .++
T Consensus       468 ------------~-~l--~~~~~~i~~~l~~~~~~~~~~~~al~~l~~l~~~~~~--~~~-~~~~~~l~~~~~~~~-~~~  528 (1207)
T d1u6gc_         468 ------------Q-HI--PVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSP--QVF-HPHVQALVPPVVACV-GDP  528 (1207)
T ss_dssp             ------------G-GH--HHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCG--GGG-HHHHTTTHHHHHHHH-TCS
T ss_pred             ------------H-hh--HhhHHHHHHHHhcccchhHHHHHHHHHHHHHHHhccH--HHH-HHHHHhhhhhHHHHH-ccc
Confidence                        0 01  1245667777754  3456778888888888765331  111 111123345676777 477


Q ss_pred             CHHHHHHHHHHHHHHHcchhhhhhhcCCCC------chHHHHHHhh--cCCchhHHHHHHHHHhhc
Q 008257          502 TENLQRRAVWVVERILRTDDIAYEVSGDPN------VSTALVDAFQ--HADYRTRQIAERALKHID  559 (572)
Q Consensus       502 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~------~~~~Lv~ll~--~~~~~~~~~Aa~aL~~L~  559 (572)
                      ...++..|..++..+...-...........      +...+...+.  +.+.+++..|..++..+.
T Consensus       529 ~~~i~~~al~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~e~~~~al~~l~~l~  594 (1207)
T d1u6gc_         529 FYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQII  594 (1207)
T ss_dssp             SHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhhhhccchhhhhHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence            888888888887777643110000000000      1112333343  344577888888777664

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.64  E-value=3.3e-05  Score=84.03  Aligned_cols=470  Identities=10%  Similarity=0.073  Sum_probs=252.1

Q ss_pred             CCCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccC--CHHHHHHHHHHHHHhccCcc--hhH--------H
Q 008257            5 KSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEG--PQETKLSLAAFLGDLALNSD--VKV--------L   72 (572)
Q Consensus         5 ~s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~--~~~~~~~aa~~L~~l~~~~~--~k~--------~   72 (572)
                      .|.|+.++..|...|..+..++.       .+++..|...+.+.  +..+|..|+..|.+......  ...        .
T Consensus        15 ~s~d~~~r~~Ae~~L~~~~~~~~-------~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~~~~~~~~~~~   87 (861)
T d2bpta1          15 LSPDQNIRLTSETQLKKLSNDNF-------LQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQ   87 (861)
T ss_dssp             HCSSHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHhcCc-------hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchhhhhHHhhhHhc
Confidence            46788888888888877654210       24566777777653  46778888888888654211  111        1


Q ss_pred             HH---hhhH-HHHHHhcccCCHHHHHHHHHHHHHhhcC--CCc-HHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHH
Q 008257           73 VA---RTVG-SCLINIMKSGNMQAREAALKALNQISSC--EPS-AKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATI  145 (572)
Q Consensus        73 i~---~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~--~~~-~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~  145 (572)
                      +.   +..+ ..+++.|.++++.++..++.++..++..  +.+ +..     .+|.|++.+.+.    .+...+..|..+
T Consensus        88 i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~wpe-----li~~L~~~~~s~----~~~~~~~~al~~  158 (861)
T d2bpta1          88 VSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPE-----LMKIMVDNTGAE----QPENVKRASLLA  158 (861)
T ss_dssp             SCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHH-----HHHHHHHHTSTT----SCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCchHH-----HHHHHHHHhcCC----CcHHHHHHHHHH
Confidence            11   1245 6788888889999999999999998853  221 222     356677776553    235678889999


Q ss_pred             HHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhc--CChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHH
Q 008257          146 LANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISN--TGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLV  223 (572)
Q Consensus       146 L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~--~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv  223 (572)
                      |..++..........      .-.....+..++..+.+  .+..++..++.++.++...-..  ...........++.|.
T Consensus       159 l~~i~e~~~~~~~~~------~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~--~~~~~~~~~~~~~~l~  230 (861)
T d2bpta1         159 LGYMCESADPQSQAL------VSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKN--NMEREGERNYLMQVVC  230 (861)
T ss_dssp             HHHHHHTSSTTSSTT------GGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHH--HHTSHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHH------HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhH--hHHhhhhhhHHHHhHH
Confidence            999986432111000      00112344455554443  4578899999999887654321  0100111233567788


Q ss_pred             HHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHH-hhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHH
Q 008257          224 QFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLI-RVISENVGISKEQAAAVGLLAELPERDLGLTRQML  302 (572)
Q Consensus       224 ~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv-~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~  302 (572)
                      ..+.+++++++..+...+..+.......+...+..   .+..+. ....+.+  ..++..+...+..++...........
T Consensus       231 ~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~---~l~~l~~~~~~~~~--~~v~~~~~~~l~~l~~~~~~~~~~~~  305 (861)
T d2bpta1         231 EATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQ---ALYALTIATMKSPN--DKVASMTVEFWSTICEEEIDIAYELA  305 (861)
T ss_dssp             HHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHH---THHHHHHHHTTCSS--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhcCcc--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88899999999999999988875433333222222   233333 2333333  36777776666555432111111111


Q ss_pred             hC----------------CChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHH
Q 008257          303 DE----------------GAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFI  366 (572)
Q Consensus       303 ~~----------------g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv  366 (572)
                      +.                ..+|.+...+.........   ........+..++..++... .+ .....     ..+.+.
T Consensus       306 ~~~~~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~-~~-~~~~~-----~~~~~~  375 (861)
T d2bpta1         306 QFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPED---DDWNVSMSAGACLQLFAQNC-GN-HILEP-----VLEFVE  375 (861)
T ss_dssp             HCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CC---CCCHHHHHHHHHHHHHHHHH-GG-GGHHH-----HHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc---hhHHHHHHHHHHHHHHHhhc-ch-hhhhh-----hcchhh
Confidence            10                1234444444321111000   11122333333343333210 01 11111     123334


Q ss_pred             HHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchH
Q 008257          367 ELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVE  446 (572)
Q Consensus       367 ~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~  446 (572)
                      ..+.+. +...+..+..++..++.....                                        ....-.-...++
T Consensus       376 ~~~~~~-~~~~~~~a~~~l~~i~~~~~~----------------------------------------~~~~~~l~~~l~  414 (861)
T d2bpta1         376 QNITAD-NWRNREAAVMAFGSIMDGPDK----------------------------------------VQRTYYVHQALP  414 (861)
T ss_dssp             HHTTCS-SHHHHHHHHHHHHHTSSSSCH----------------------------------------HHHHHHHHHHHH
T ss_pred             hhhhhH-HHHHHHHHHHHHHHHHhhcch----------------------------------------hhHHHHHHHHHH
Confidence            445555 778888888888776532110                                        000000123678


Q ss_pred             HHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhh--cCCHHHHHHHHHHHHHHHcc--hhh
Q 008257          447 KLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLE--KRTENLQRRAVWVVERILRT--DDI  522 (572)
Q Consensus       447 ~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~~~~~~a~~~l~~l~~~--~~~  522 (572)
                      .+++++.++++.|+..++.+++.++.....      .+.....++.++..+..  ..++..+..+.+++..++..  +..
T Consensus       415 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~------~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  488 (861)
T d2bpta1         415 SILNLMNDQSLQVKETTAWCIGRIADSVAE------SIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEAT  488 (861)
T ss_dssp             HHHHGGGCSCHHHHHHHHHHHHHHHHHHGG------GSCTTTTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSSSS
T ss_pred             HHHHHhcCcchhhhhHHHHHHHHHHHHhch------hhhhHHhhhhhhHHHHhccccChHHHHHHHHHHHHHHHHhhhcc
Confidence            899999999999999999999998854210      11122333433332211  45677788888888877643  111


Q ss_pred             hhhhcCC-CCchHHHHHHhhc--CCchhHHHHHHHHHhhcc
Q 008257          523 AYEVSGD-PNVSTALVDAFQH--ADYRTRQIAERALKHIDK  560 (572)
Q Consensus       523 ~~~~~~~-~~~~~~Lv~ll~~--~~~~~~~~Aa~aL~~L~~  560 (572)
                      ...+... ......|+.....  .+..++..+..+|..+..
T Consensus       489 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i~  529 (861)
T d2bpta1         489 PSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVE  529 (861)
T ss_dssp             SCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHH
T ss_pred             cchhhHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence            1111110 0111234444433  345677778888877655

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=2.3e-06  Score=86.21  Aligned_cols=410  Identities=11%  Similarity=0.096  Sum_probs=223.4

Q ss_pred             HHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhH-HHHHHhcccC--CHHHHHHHHHHHHHhhcCCC-cH-HHH--
Q 008257           41 LLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVG-SCLINIMKSG--NMQAREAALKALNQISSCEP-SA-KVL--  113 (572)
Q Consensus        41 Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~Lv~lL~s~--~~~~~~~A~~aL~~Ls~~~~-~~-~~i--  113 (572)
                      ++.-+.+++.+.+..|-..|..+..++.       .+. ..|...|.+.  +..+|..|+-.|.|.-.... .. ...  
T Consensus         5 il~~~~s~d~~~r~~A~~~L~~~~~~~~-------~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~~~   77 (458)
T d1ibrb_           5 ILEKTVSPDRLELEAAQKFLERAAVENL-------PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQ   77 (458)
T ss_dssp             HHHHTTCSCHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHH
T ss_pred             HHHHHhCcCHHHHHHHHHHHHHHHhcCc-------hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhHHhh
Confidence            3444456788888888888876654211       133 7777777654  46788888888887765322 11 111  


Q ss_pred             --------HHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhc--
Q 008257          114 --------IHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISN--  183 (572)
Q Consensus       114 --------v~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~--  183 (572)
                              ......+.+++.+.+.      ...+..++.+++.++.....           .-.-.+.++.++..+.+  
T Consensus        78 ~~~~l~~~~~~~i~~~ll~~~~~~------~~~~~~~~~~~~~i~~~~~~-----------~~~~~~~~~~l~~~l~~~~  140 (458)
T d1ibrb_          78 RWLAIDANARREVKNYVLQTLGTE------TYRPSSASQCVAGIACAEIP-----------VNQWPELIPQLVANVTNPN  140 (458)
T ss_dssp             HHHTSCHHHHHHHHHHHHHHTTCC------CSSSCSHHHHHHHHHHHHGG-----------GTCCTTHHHHHHHHHHCTT
T ss_pred             hhccCCHHHHHHHHHHHHhccCCC------cHHHHHHHHHHHHHHHHhCC-----------cccCcchhHHHHHHHHhhc
Confidence                    1223344556666542      12344566667766653210           00124578999998876  


Q ss_pred             CChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCC--CHHHHHHHHHHHHHcCCCCChhHH-HHHhccc
Q 008257          184 TGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAP--QNDLRLASIELIQNLSPHMGHELA-DALRGAV  260 (572)
Q Consensus       184 ~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~a~~~L~~Ls~~~~~~~~-~~i~~~~  260 (572)
                      .++..+..++.++..++...... ....  .....++.++..+.+.  +.+++..|++++..+......... .....  
T Consensus       141 ~~~~~~~~~l~~l~~~~~~~~~~-~~~~--~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~--  215 (458)
T d1ibrb_         141 STEHMKESTLEAIGYICQDIDPE-QLQD--KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERH--  215 (458)
T ss_dssp             CCHHHHHHHHHHHHHHHHHSCGG-GTGG--GHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHH--
T ss_pred             chHHHHHHHHHHHHHHHhhccch-hhhh--hHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHH--
Confidence            34566777888887766432110 0000  0122466777777654  468999999999988865322110 11111  


Q ss_pred             CChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHH
Q 008257          261 GQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLA  340 (572)
Q Consensus       261 g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~  340 (572)
                      ..++.+..++.+++.  +++..+..++..+....+......+..-..+.+...+.+          ....+...++..+.
T Consensus       216 ~~~~~l~~~~~~~~~--~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~----------~~~~~~~~a~~~l~  283 (458)
T d1ibrb_         216 FIMQVVCEATQCPDT--RVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKS----------DIDEVALQGIEFWS  283 (458)
T ss_dssp             HHHHHHHHHTTCSSH--HHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHC----------SSHHHHHHHHHHHH
T ss_pred             HhHhhHHHHhcCCCH--HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcc----------ccHHHHHHHHHHHH
Confidence            245566777777664  788888888877654222211111111112222233322          13344555666665


Q ss_pred             HHhccC------------------CCChHHHHHHHHcCchHHHHHHhccC------CcHHHHHHHHHHHHHhhhhccccC
Q 008257          341 RVTFVL------------------SDEPDAIALCCEHNLAALFIELLQSN------GLDKVQMVSATALENLSLESKNLT  396 (572)
Q Consensus       341 ~l~~~~------------------~~~~~~~~~i~~~g~i~~Lv~lL~~~------~~~~vk~~Aa~aL~~ls~~~~~~~  396 (572)
                      .++...                  ........ ......+|.+.+.+...      ....++..|+.++..++...++  
T Consensus       284 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~--  360 (458)
T d1ibrb_         284 NVCDEEMDLAIEASEAAEQGRPPEHTSKFYAK-GALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--  360 (458)
T ss_dssp             HHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHH-HHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--
T ss_pred             HHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHH-HHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccH--
Confidence            554110                  00000011 11123345555555432      1223666677776666542210  


Q ss_pred             CCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCcc
Q 008257          397 KLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVD  476 (572)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~  476 (572)
                                                            .   +. ...++.+.+.|.+++..++.+|+.+|+.++.....
T Consensus       361 --------------------------------------~---~~-~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~  398 (458)
T d1ibrb_         361 --------------------------------------D---IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEP  398 (458)
T ss_dssp             --------------------------------------T---HH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCT
T ss_pred             --------------------------------------h---hh-hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCH
Confidence                                                  0   01 12456677888999999999999999999853210


Q ss_pred             chhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcchhhhhhhcCCCCchHHHHHHhhcC
Q 008257          477 IEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHA  543 (572)
Q Consensus       477 ~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~  543 (572)
                        ...... -...++.+++.+ .++++.+|..|+++|.+++.+-  .........++ +|+..|-+|
T Consensus       399 --~~~~~~-l~~i~~~l~~~l-~d~~~~VR~~a~~~l~~i~~~~--~~~~~~~~~l~-~ll~~ll~g  458 (458)
T d1ibrb_         399 --SQLKPL-VIQAMPTLIELM-KDPSVVVRDTAAWTVGRICELL--PEAAINDVYLA-PLLQCLIEG  458 (458)
T ss_dssp             --TTTCTT-TTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHHHHG--GGGCCSTTTHH-HHHHHHHCC
T ss_pred             --hHHHHH-HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHh--hcccchhhHHH-HHHHHHhCc
Confidence              100011 123567888999 5999999999999999998541  11111222343 677665443

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=5e-05  Score=82.94  Aligned_cols=483  Identities=16%  Similarity=0.179  Sum_probs=241.6

Q ss_pred             HHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccCc--chhHHHHhhhHHHHHHhcccC
Q 008257           11 TVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNS--DVKVLVARTVGSCLINIMKSG   88 (572)
Q Consensus        11 ~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~--~~k~~i~~~g~~~Lv~lL~s~   88 (572)
                      ....|..++..++.....  .+.+ -.++.+...+.++....|..+...++.+....  ..-......-.+.++..+.++
T Consensus       344 ~~~~a~~~l~~l~~~~~~--~~~~-~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~  420 (876)
T d1qgra_         344 PCKAAGVCLMLLATCCED--DIVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP  420 (876)
T ss_dssp             HHHHHHHHHHHHHHHHGG--GGHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHHHHhhh--hhhh-hhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCC
Confidence            455555666655542111  0110 01233444566777888877778888776532  221222233349999999999


Q ss_pred             CHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccc---cCCCc
Q 008257           89 NMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSIT---VGPDN  165 (572)
Q Consensus        89 ~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~---~~~~~  165 (572)
                      ++.++..|++++..++..-..  .......++.++..+...-  +..+.++..+++++.+++..........   .....
T Consensus       421 ~~~vr~~a~~~l~~~~~~~~~--~~~~~~~~~~~~~~l~~~l--~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~  496 (876)
T d1qgra_         421 SVVVRDTAAWTVGRICELLPE--AAINDVYLAPLLQCLIEGL--SAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPAT  496 (876)
T ss_dssp             SHHHHHHHHHHHHHHHHHCGG--GTSSTTTHHHHHHHHHHHT--TSCHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCC
T ss_pred             ccHHHHHHHHHHHHHHHHcch--hhhhHHHhhhHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            999999999999999864221  1112334455555443221  1237789999999999875321111000   00000


Q ss_pred             ccc--chhhhHHHHHHHHhc---CChhHHHHHHHHHHHccCCCCccHHHHHHHHh--cCChHHHHHHhcCC------CH-
Q 008257          166 QTL--VSEDIVHNLLHLISN---TGPTIECKLLQVLVGLTSSPTTVLSVVSAIKS--SGATISLVQFVEAP------QN-  231 (572)
Q Consensus       166 ~~l--~~~~~i~~Lv~lL~~---~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~--~g~i~~Lv~lL~~~------~~-  231 (572)
                      ..+  .....++.++..+..   ....++..+..++..+......  .....+.+  ...++.+...+...      .. 
T Consensus       497 ~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~  574 (876)
T d1qgra_         497 YCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAK--DCYPAVQKTTLVIMERLQQVLQMESHIQSTSDR  574 (876)
T ss_dssp             CSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCS--TTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccccHhHHHHHHHHHHHhhhhhhh--HHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhh
Confidence            111  123456667777653   2445677777777766543221  11111111  11222233333211      11 


Q ss_pred             ----HHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCCh
Q 008257          232 ----DLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAF  307 (572)
Q Consensus       232 ----~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l  307 (572)
                          +.+......+..+....+.+....+.+  ..++.++.++....+...++..+..+++.++....+.-.... .-.+
T Consensus       575 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~--~i~~~l~~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~l-~~ii  651 (876)
T d1qgra_         575 IQFNDLQSLLCATLQNVLRKVQHQDALQISD--VVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYM-EAFK  651 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSCHHHHHTTHH--HHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGH-HHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcchhhhhhhHH--HHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcchhhHHHH-HHHH
Confidence                223444455555555444433222222  356677777764332236777777777766432111100000 1245


Q ss_pred             HHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCC-cHHHHHHHHHHHH
Q 008257          308 GLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNG-LDKVQMVSATALE  386 (572)
Q Consensus       308 ~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~vk~~Aa~aL~  386 (572)
                      |.++..|++.         ....+...++..+..++..  .......  .-..+++.+++.|+++. +..+|..+.++++
T Consensus       652 ~~l~~~l~~~---------~~~~v~~~a~~~l~~l~~~--~~~~~~~--~~~~i~~~l~~~l~~~~~~~~~k~~~~~~i~  718 (876)
T d1qgra_         652 PFLGIGLKNY---------AEYQVCLAAVGLVGDLCRA--LQSNIIP--FCDEVMQLLLENLGNENVHRSVKPQILSVFG  718 (876)
T ss_dssp             HHHHHHHHHC---------TTHHHHHHHHHHHHHHHHH--HGGGGHH--HHHHHHHHHHHHHTCTTSCGGGHHHHHHHHH
T ss_pred             HHHHHHHhCC---------CcHHHHHHHHHHHHHHHHH--hHHhhhh--hHHHHHHHHHHHhCCccCCHHHHHHHHHHHH
Confidence            6667776652         1344667777777666532  1122211  12346788899998752 4678999999999


Q ss_pred             HhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhh----cC----CCH-
Q 008257          387 NLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALL----DH----TNE-  457 (572)
Q Consensus       387 ~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL----~~----~~~-  457 (572)
                      .++...+....                                             ..++.++..|    +.    .+. 
T Consensus       719 ~i~~~~~~~~~---------------------------------------------~yl~~~l~~l~~~~~~~~~~~~~~  753 (876)
T d1qgra_         719 DIALAIGGEFK---------------------------------------------KYLEVVLNTLQQASQAQVDKSDYD  753 (876)
T ss_dssp             HHHHHHGGGGG---------------------------------------------GGHHHHHHHHHHHHTCCCCTTCHH
T ss_pred             HHHHHHhHhhH---------------------------------------------HHHHHHHHHHHHHHhcccCccchh
Confidence            88765432110                                             0122222222    11    111 


Q ss_pred             ------hHHHHHHHHHHHhhh----cCccchhhHHHHHhcCChHHHHHHH---h--hcCCHHHHHHHHHHHHHHHcc--h
Q 008257          458 ------KVVEASLAALSTVID----DGVDIEQGVMVLCEAQGIKPILDVL---L--EKRTENLQRRAVWVVERILRT--D  520 (572)
Q Consensus       458 ------~v~~~A~~aL~~l~~----~~~~~~~~~~~i~~~g~i~~L~~lL---~--~~~~~~~~~~a~~~l~~l~~~--~  520 (572)
                            .+++.++.++..+..    +..........+.  .-++.+++++   .  ...++.+...|+.+|..+...  .
T Consensus       754 ~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~g~  831 (876)
T d1qgra_         754 MVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQ--PRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGK  831 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSG--GGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccccchhhHHHHH--HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence                  123344444333321    1110000001111  0122333332   1  134677888888888877643  2


Q ss_pred             hhhhhhcCCCCchHHHHHHhhcCCchhHHHHHHHHHhhcccCCCC
Q 008257          521 DIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHIDKIPNFS  565 (572)
Q Consensus       521 ~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~~s  565 (572)
                      +....+.....+...|.+-.++.++..|..|.|+...+.++++++
T Consensus       832 ~~~~~~~~~~~v~~ll~~~~~s~~~~~~~~a~~~~~~~~~~~~~~  876 (876)
T d1qgra_         832 DVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKELRKLKNQA  876 (876)
T ss_dssp             HHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHhcChHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccCC
Confidence            222233332233334555678899999999999999999887654

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.44  E-value=5.7e-05  Score=82.10  Aligned_cols=470  Identities=11%  Similarity=0.068  Sum_probs=249.1

Q ss_pred             CCCHHHHHHHHHHHHhhccC-cchH-HHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccC-cc-hhHHHHhhhH-HH
Q 008257            6 SENLLTVEKAEKTLANLEKC-ENNV-RQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALN-SD-VKVLVARTVG-SC   80 (572)
Q Consensus         6 s~~~~~~~~A~~~L~~L~~~-~~n~-~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~-~~-~k~~i~~~g~-~~   80 (572)
                      ..+..++..|..++.++... +.+. ........++.+...+++++++++..+..+|..++.. .+ ....+. .-+ +.
T Consensus       192 ~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~-~~l~~l  270 (861)
T d2bpta1         192 ETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYME-QALYAL  270 (861)
T ss_dssp             CCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHH-HTHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence            44567888888888887652 2221 1111223456777888899999999999999887652 22 122222 223 45


Q ss_pred             HHHhcccCCHHHHHHHHHHHHHhhcCCCcH-----------------HHHHHcCChHHHHHHHhccCCC--CCCcchHHH
Q 008257           81 LINIMKSGNMQAREAALKALNQISSCEPSA-----------------KVLIHAGILPPLVKDLFTVGSN--HLPMRLKEV  141 (572)
Q Consensus        81 Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~-----------------~~iv~~G~i~~Lv~lL~s~~~~--~~~~~~~~~  141 (572)
                      +....++.++.++..+...+..++......                 ..-.-...+|.+...+.....+  +.....+..
T Consensus       271 ~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~  350 (861)
T d2bpta1         271 TIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMS  350 (861)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHH
T ss_pred             HHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHH
Confidence            566777888899998888887775421110                 0011123455666666533211  223456777


Q ss_pred             HHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHH
Q 008257          142 SATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATIS  221 (572)
Q Consensus       142 aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~  221 (572)
                      +..++..++....+           . ......+.+...+.+.++..+..+..++..+......  ....... ...++.
T Consensus       351 ~~~~l~~~~~~~~~-----------~-~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~--~~~~~~l-~~~l~~  415 (861)
T d2bpta1         351 AGACLQLFAQNCGN-----------H-ILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDK--VQRTYYV-HQALPS  415 (861)
T ss_dssp             HHHHHHHHHHHHGG-----------G-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCH--HHHHHHH-HHHHHH
T ss_pred             HHHHHHHHHhhcch-----------h-hhhhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcch--hhHHHHH-HHHHHH
Confidence            78888887653210           0 1122333444555677888899999999988876542  1111111 246788


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhh----HHhhhccCCCChHHHHHHHHHHhcCC----CC
Q 008257          222 LVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGS----LIRVISENVGISKEQAAAVGLLAELP----ER  293 (572)
Q Consensus       222 Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~----Lv~lL~~~~~~~~~~~~A~~~L~~L~----~~  293 (572)
                      ++..+.++++.+|..+++++..++...+..    +... ..++.    +...+...   ...+..+.+++..+.    ..
T Consensus       416 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~-~~~~~ll~~l~~~~~~~---~~~~~~~~~~~~~l~~~~~~~  487 (861)
T d2bpta1         416 ILNLMNDQSLQVKETTAWCIGRIADSVAES----IDPQ-QHLPGVVQACLIGLQDH---PKVATNCSWTIINLVEQLAEA  487 (861)
T ss_dssp             HHHGGGCSCHHHHHHHHHHHHHHHHHHGGG----SCTT-TTHHHHHHHHHHHHTSC---HHHHHHHHHHHHHHHHHHSSS
T ss_pred             HHHHhcCcchhhhhHHHHHHHHHHHHhchh----hhhH-HhhhhhhHHHHhccccC---hHHHHHHHHHHHHHHHHhhhc
Confidence            999999999999999999999886432111    1111 22333    33333322   245555555444332    11


Q ss_pred             cHH-HHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHH--cCchHHHHHHhc
Q 008257          294 DLG-LTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCE--HNLAALFIELLQ  370 (572)
Q Consensus       294 ~~~-~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~--~g~i~~Lv~lL~  370 (572)
                      ... ....+  ...+..++......        .....+++.+..++..+...  ........+..  ....+.|...+.
T Consensus       488 ~~~~~~~~~--~~~~~~l~~~~~~~--------~~~~~~~~~~~~al~~~i~~--~~~~~~~~~~~l~~~~~~~l~~~~~  555 (861)
T d2bpta1         488 TPSPIYNFY--PALVDGLIGAANRI--------DNEFNARASAFSALTTMVEY--ATDTVAETSASISTFVMDKLGQTMS  555 (861)
T ss_dssp             SSCGGGGGH--HHHHHHHHHHHTCS--------CCGGGHHHHHHHHHHHHHHH--CCGGGHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccchhhHHH--hhHHHHHHHHHhhh--------hhhHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            100 00000  01122233332211        02344566677777666543  12222222111  111222333332


Q ss_pred             cCC---c-------HHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhh
Q 008257          371 SNG---L-------DKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLL  440 (572)
Q Consensus       371 ~~~---~-------~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~  440 (572)
                      ...   .       ..++..+..++..+....+...                                      ..   .
T Consensus       556 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~--------------------------------------~~---~  594 (861)
T d2bpta1         556 VDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSV--------------------------------------EP---V  594 (861)
T ss_dssp             SCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGT--------------------------------------GG---G
T ss_pred             HHhhhhhhhHHhHHHHHHHHHHHHHHHHHhcchhhH--------------------------------------HH---H
Confidence            210   0       1122233333333322111000                                      00   0


Q ss_pred             hccchHHHHHhhcC-CCHhHHHHHHHHHHHhhhc-CccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHc
Q 008257          441 EGHAVEKLIALLDH-TNEKVVEASLAALSTVIDD-GVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILR  518 (572)
Q Consensus       441 ~~g~i~~Lv~lL~~-~~~~v~~~A~~aL~~l~~~-~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~  518 (572)
                      -...++.+.+.+.. .+..+++.++.+++.++.. ++.+......     -++.+...+ .+.++.++..|+.++..++.
T Consensus       595 ~~~l~~~l~~~l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~~-----i~p~l~~~l-~~~~~~v~~~a~~~l~~i~~  668 (861)
T d2bpta1         595 ADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLET-----FSPYLLKAL-NQVDSPVSITAVGFIADISN  668 (861)
T ss_dssp             HHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHH-----HHHHHHHHH-HCTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHhhHHHHHHHHH-----HhhHHHHHh-CCCCHHHHHHHHHHHHHHHH
Confidence            11245566666654 4566788889988888753 2222222222     357788888 48888899999999988875


Q ss_pred             c-hhhhhhhcCCCCchHHHHHHhhcCC--chhHHHHHHHHHhhcc
Q 008257          519 T-DDIAYEVSGDPNVSTALVDAFQHAD--YRTRQIAERALKHIDK  560 (572)
Q Consensus       519 ~-~~~~~~~~~~~~~~~~Lv~ll~~~~--~~~~~~Aa~aL~~L~~  560 (572)
                      . ++.-..+..  .+...|++.+++.+  ..+|..+..+|..+..
T Consensus       669 ~~~~~~~~~~~--~i~~~L~~~l~~~~~~~~~k~~~~~~l~~i~~  711 (861)
T d2bpta1         669 SLEEDFRRYSD--AMMNVLAQMISNPNARRELKPAVLSVFGDIAS  711 (861)
T ss_dssp             HTGGGGHHHHH--HHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHH
T ss_pred             HhHHHhHhhHH--HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence            4 222223322  23347888887654  5788888888877654

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.39  E-value=6.7e-05  Score=74.47  Aligned_cols=362  Identities=15%  Similarity=0.102  Sum_probs=204.5

Q ss_pred             ChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHH
Q 008257          118 ILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLV  197 (572)
Q Consensus       118 ~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~  197 (572)
                      ++..++.+|+..    ...++.++....+.-|-..++....+ +..  ..-.....-+++..++..++......+.+.+.
T Consensus        75 ~~~~~l~lL~~~----sk~d~vqyvL~Li~dLL~~d~~~~~~-~~~--~~~~~~~~~~~f~~~l~~~d~~~~~~s~~i~~  147 (477)
T d1ho8a_          75 TLIPLIHLLSTS----DNEDCKKSVQNLIAELLSSDKYGDDT-VKF--FQEDPKQLEQLFDVSLKGDFQTVLISGFNVVS  147 (477)
T ss_dssp             THHHHHHHHHSC----CCHHHHHHHHHHHHHHHHCSSSSHHH-HHH--HHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhc----CcHHHHHHHHHHHHHHHhcCcchhHH-HHH--HhhCccchhHHHHHhccCchhHHHHHHHHHHH
Confidence            577778887653    12566666666666665543221110 000  00001123345556666666666677777777


Q ss_pred             HccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcc-cCChhhHHhhhccCC--
Q 008257          198 GLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGA-VGQLGSLIRVISENV--  274 (572)
Q Consensus       198 ~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~-~g~l~~Lv~lL~~~~--  274 (572)
                      .++.......+.......  ....+-.+..+.+.+.+.-++..+..+.+.  .+.++.+... ...+++|+++|....  
T Consensus       148 ll~~~~~~~~~~~e~l~~--~~~~l~~l~~~~~~~~~~i~v~~lq~llr~--~~~R~~fw~~~~~~~~~l~~il~~a~~~  223 (477)
T d1ho8a_         148 LLVQNGLHNVKLVEKLLK--NNNLINILQNIEQMDTCYVCIRLLQELAVI--PEYRDVIWLHEKKFMPTLFKILQRATDS  223 (477)
T ss_dssp             HHTSTTTCCHHHHHHHHH--CHHHHHHHHCTTCHHHHHHHHHHHHHHHTS--HHHHHHHHTTHHHHHHHHHHHHHHHHC-
T ss_pred             HHHhccccccchHHHHHH--hhHHHHHhhcccccchHHHHHHHHHHHhcC--ccHHHHHHHcccchHHHHHHHHHHHhcc
Confidence            776654321222222221  233444455677778888888888877755  2333333221 134667777764311  


Q ss_pred             ------------C-ChHHHHHHHHHHhcCCCCcHHHHHHHHhC--CChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHH
Q 008257          275 ------------G-ISKEQAAAVGLLAELPERDLGLTRQMLDE--GAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVL  339 (572)
Q Consensus       275 ------------~-~~~~~~~A~~~L~~L~~~~~~~~~~l~~~--g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL  339 (572)
                                  . -..++..++-+++-|+. +++....+.+.  +.++.|+.+++...         .+.+..-++.+|
T Consensus       224 ~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~~l~~~~~~~i~~l~~i~~~s~---------KEKvvRv~l~~l  293 (477)
T d1ho8a_         224 QLATRIVATNSNHLGIQLQYHSLLLIWLLTF-NPVFANELVQKYLSDFLDLLKLVKITI---------KEKVSRLCISII  293 (477)
T ss_dssp             ------------CCHHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHHHHCC---------SHHHHHHHHHHH
T ss_pred             cccchhhcccCCCccHHHHHHHHHHHHHHHc-CHHHHHHHHHhhhHHHHHHHHHHHhhh---------HHHHHHHHHHHH
Confidence                        0 01456788888888888 66676777766  44899999987632         345666788888


Q ss_pred             HHHhccCCC--ChHHHHHHHHcCchHHHHHHhccC--CcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCcccccccc
Q 008257          340 ARVTFVLSD--EPDAIALCCEHNLAALFIELLQSN--GLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFS  415 (572)
Q Consensus       340 ~~l~~~~~~--~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (572)
                      .|+......  +......++..+++|. ++.|...  .++++...--..-..|-.....++.             |....
T Consensus       294 ~Nll~~~~~~~~~~~~~~~v~~~~l~~-l~~L~~r~~~Dedl~edl~~L~~~L~~~~k~lTs-------------fd~Y~  359 (477)
T d1ho8a_         294 LQCCSTRVKQHKKVIKQLLLLGNALPT-VQSLSERKYSDEELRQDISNLKEILENEYQELTS-------------FDEYV  359 (477)
T ss_dssp             HHTTSSSSTTHHHHHHHHHHHHCHHHH-HHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCH-------------HHHHH
T ss_pred             HHHhhhhhhhhhhHHHHHHHHcchhHH-HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhcCc-------------HHHHH
Confidence            888743100  1113344667777655 5556553  3666654433332223222222221             00000


Q ss_pred             C--CCccccccccccC--ccCccchhhhh--hccchHHHHHhhc----------CCCHhHHHHHHHHHHHhhhcCccchh
Q 008257          416 K--QPVITGLCRLHRG--LCSLKETFCLL--EGHAVEKLIALLD----------HTNEKVVEASLAALSTVIDDGVDIEQ  479 (572)
Q Consensus       416 ~--~~~~~~~c~~~~~--~~~~~~~~~l~--~~g~i~~Lv~lL~----------~~~~~v~~~A~~aL~~l~~~~~~~~~  479 (572)
                      .  .+....=.|+|..  .+ .+|...+-  +-..+..|+++|+          +.++.+...|+.=++.++.+.+   .
T Consensus       360 ~Ev~Sg~L~WSP~H~se~FW-~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P---~  435 (477)
T d1ho8a_         360 AELDSKLLCWSPPHVDNGFW-SDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLP---E  435 (477)
T ss_dssp             HHHHHTCCCCCGGGGCHHHH-HHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCT---T
T ss_pred             HHHhcCCCCCCCCcCChhHH-HHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCc---c
Confidence            0  0000011234432  11 01110110  2236789999996          3477888889999999998765   6


Q ss_pred             hHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcc
Q 008257          480 GVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRT  519 (572)
Q Consensus       480 ~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~  519 (572)
                      +...+.+.||=..+++++ +|+|++++..|..+++++..+
T Consensus       436 gr~il~~lg~K~~vM~Lm-~h~d~~Vr~eAL~avQklm~~  474 (477)
T d1ho8a_         436 SIDVLDKTGGKADIMELL-NHSDSRVKYEALKATQAIIGY  474 (477)
T ss_dssp             HHHHHHHHSHHHHHHHHT-SCSSHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHcCcHHHHHHHh-cCCCHHHHHHHHHHHHHHHHh
Confidence            778888888888899999 699999999999999998743

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=5.1e-05  Score=82.85  Aligned_cols=422  Identities=10%  Similarity=0.103  Sum_probs=237.6

Q ss_pred             CCCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccC--CHHHHHHHHHHHHHhcc-Ccch-hHH-------H
Q 008257            5 KSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEG--PQETKLSLAAFLGDLAL-NSDV-KVL-------V   73 (572)
Q Consensus         5 ~s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~--~~~~~~~aa~~L~~l~~-~~~~-k~~-------i   73 (572)
                      .|.|...++.|...|..+...+  .     .|++..|...+.+.  +..+|..|+..|.|... .... +..       +
T Consensus        11 ~s~d~~~r~~Ae~~L~~~~~~~--~-----~~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~~~~~~~~~~~~~~~i   83 (876)
T d1qgra_          11 VSPDRLELEAAQKFLERAAVEN--L-----PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAI   83 (876)
T ss_dssp             GCSCHHHHHHHHHHHHHHHHHH--H-----HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTS
T ss_pred             hCcCHHHHHHHHHHHHHHHhcC--h-----hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccchhhhhhcccccC
Confidence            4678888888888888766431  0     24566677767554  36688888888988643 2221 111       1


Q ss_pred             ---HhhhH-HHHHHhcccCCHHHHHHHHHHHHHhhcCC---CcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHH
Q 008257           74 ---ARTVG-SCLINIMKSGNMQAREAALKALNQISSCE---PSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATIL  146 (572)
Q Consensus        74 ---~~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~---~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L  146 (572)
                         .+..+ ..|++.|.+++. .+..++.++..++..+   ..+     .+.+|.|++.+.+++   .+..+++.+..+|
T Consensus        84 ~~~~k~~ik~~ll~~l~~~~~-~~~~~a~~i~~i~~~~~p~~~W-----peli~~L~~~l~~~~---~~~~~~~~~l~~l  154 (876)
T d1qgra_          84 DANARREVKNYVLHTLGTETY-RPSSASQCVAGIACAEIPVNQW-----PELIPQLVANVTNPN---STEHMKESTLEAI  154 (876)
T ss_dssp             CHHHHHHHHHHHHHHTTTCCS-SSCHHHHHHHHHHHHHGGGTCC-----TTHHHHHHHHHHCTT---CCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHCCcccc-----HHHHHHHHHHhcCCC---CcHHHHHHHHHHH
Confidence               12345 778888887664 4556777888887532   112     256888998887643   3467888899999


Q ss_pred             HHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcC--ChhHHHHHHHHHHHccCCCCcc---HHHHHHHHhcCChHH
Q 008257          147 ANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNT--GPTIECKLLQVLVGLTSSPTTV---LSVVSAIKSSGATIS  221 (572)
Q Consensus       147 ~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~--~~~~q~~a~~aL~~l~~~~~~~---~~~~~~i~~~g~i~~  221 (572)
                      ..++..-.. .  .     ..-....+++.++..+.++  +.+++..++.++.+........   ...+.     -.++.
T Consensus       155 ~~i~~~~~~-~--~-----~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~-----~i~~~  221 (876)
T d1qgra_         155 GYICQDIDP-E--Q-----LQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERH-----FIMQV  221 (876)
T ss_dssp             HHHHHHSCH-H--H-----HGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHH-----HHHHH
T ss_pred             HHHHHHCCH-H--H-----HHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHH-----HHHHH
Confidence            998753210 0  0     0112345778888888654  4578888988888765542110   11111     23566


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHH--
Q 008257          222 LVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTR--  299 (572)
Q Consensus       222 Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~--  299 (572)
                      +...+.+++++++..+...|..+.......+...+..  ...+.+...+.+..+  +....+...+..++........  
T Consensus       222 l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~  297 (876)
T d1qgra_         222 VCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGP--ALFAITIEAMKSDID--EVALQGIEFWSNVCDEEMDLAIEA  297 (876)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTT--THHHHHHHHHTCSSH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHH--HHHHHHHHHhccccH--HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7778888899999999999988875434333333332  233344444555443  5666665554444321111100  


Q ss_pred             --H----------------HHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCc
Q 008257          300 --Q----------------MLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNL  361 (572)
Q Consensus       300 --~----------------l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~  361 (572)
                        .                ......+|.+...+.........   ....+...+..++..++...  ......     -+
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~---~~~~~~~~a~~~l~~l~~~~--~~~~~~-----~~  367 (876)
T d1qgra_         298 SEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDD---DDWNPCKAAGVCLMLLATCC--EDDIVP-----HV  367 (876)
T ss_dssp             HHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCT---TCCCHHHHHHHHHHHHHHHH--GGGGHH-----HH
T ss_pred             hHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhccccccc---ccchHHHHHHHHHHHHHHHh--hhhhhh-----hh
Confidence              0                00111222333333221100000   11123444444444444210  111111     13


Q ss_pred             hHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhh
Q 008257          362 AALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLE  441 (572)
Q Consensus       362 i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~  441 (572)
                      +|.+.+.+.++ +...|+.+..++..++.....                                        ....-.-
T Consensus       368 ~~~i~~~l~~~-~~~~r~~~~~~l~~~~~~~~~----------------------------------------~~~~~~~  406 (876)
T d1qgra_         368 LPFIKEHIKNP-DWRYRDAAVMAFGCILEGPEP----------------------------------------SQLKPLV  406 (876)
T ss_dssp             HHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCH----------------------------------------HHHHHHH
T ss_pred             HHHHHHhhccc-hHHHHHHHHHHHHhhhhhhhH----------------------------------------HHHHHHH
Confidence            45556666676 788888888888766432100                                        0000012


Q ss_pred             ccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHH----HHHHHhhcCCHHHHHHHHHHHHHHH
Q 008257          442 GHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKP----ILDVLLEKRTENLQRRAVWVVERIL  517 (572)
Q Consensus       442 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~----L~~lL~~~~~~~~~~~a~~~l~~l~  517 (572)
                      ...++.++..+.++++.|+..|+.+++.++..-..      .......++.    +...+  ..++.++..+.+++.++.
T Consensus       407 ~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~------~~~~~~~~~~~~~~l~~~l--~~~~~v~~~~~~~l~~l~  478 (876)
T d1qgra_         407 IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE------AAINDVYLAPLLQCLIEGL--SAEPRVASNVCWAFSSLA  478 (876)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGG------GTSSTTTHHHHHHHHHHHT--TSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcch------hhhhHHHhhhHHHHHHHHh--cCCHHHHHHHHHHHHHHH
Confidence            24778899999999999999999999999864221      1111222333    44444  456888899999988886


Q ss_pred             c
Q 008257          518 R  518 (572)
Q Consensus       518 ~  518 (572)
                      .
T Consensus       479 ~  479 (876)
T d1qgra_         479 E  479 (876)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.10  E-value=3.2e-07  Score=74.27  Aligned_cols=108  Identities=13%  Similarity=0.092  Sum_probs=82.0

Q ss_pred             ccCCHHHHHHHHHHHHHhccCcchhHHHHhhhHHHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHH
Q 008257           46 LEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKD  125 (572)
Q Consensus        46 ~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~l  125 (572)
                      ++.++.+|..|+.+|+.+.          ...+++|+++|+++++.++..|+++|.++..          .+++|.|+++
T Consensus         2 ~D~~~~VR~~A~~aL~~~~----------~~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~----------~~~~~~L~~~   61 (111)
T d1te4a_           2 ADENKWVRRDVSTALSRMG----------DEAFEPLLESLSNEDWRIRGAAAWIIGNFQD----------ERAVEPLIKL   61 (111)
T ss_dssp             CSSCCCSSSSCCSSTTSCS----------STTHHHHHHGGGCSCHHHHHHHHHHHGGGCS----------HHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHhC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhcch----------hhhHHHHHhh
Confidence            4455556666666555432          1245889999999999999999999987542          2468999999


Q ss_pred             HhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHH
Q 008257          126 LFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLV  197 (572)
Q Consensus       126 L~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~  197 (572)
                      |.+.     ++.+|..|+++|+.+..                   ...++.|..++.++++.++..|+.+|.
T Consensus        62 l~d~-----~~~VR~~a~~aL~~i~~-------------------~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          62 LEDD-----SGFVRSGAARSLEQIGG-------------------ERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHC-----CTHHHHHHHHHHHHHCS-------------------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             hccc-----hhHHHHHHHHHHHHhCc-------------------cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            9864     37899999999998731                   357888999999999999999988763

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.06  E-value=2.6e-07  Score=74.82  Aligned_cols=109  Identities=17%  Similarity=0.266  Sum_probs=85.8

Q ss_pred             cccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCC
Q 008257           85 MKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPD  164 (572)
Q Consensus        85 L~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~  164 (572)
                      |+++++.+|..|+++|..+.           ..++++|++.|.+.     ++.+|..|+++|+++.              
T Consensus         1 L~D~~~~VR~~A~~aL~~~~-----------~~~~~~L~~~l~d~-----~~~vR~~a~~~L~~~~--------------   50 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRMG-----------DEAFEPLLESLSNE-----DWRIRGAAAWIIGNFQ--------------   50 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSCS-----------STTHHHHHHGGGCS-----CHHHHHHHHHHHGGGC--------------
T ss_pred             CCCcCHHHHHHHHHHHHHhC-----------HHHHHHHHHHHcCC-----CHHHHHHHHHHHHhcc--------------
Confidence            45666777777777776542           13688999999754     3789999999988662              


Q ss_pred             ccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHH
Q 008257          165 NQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQ  242 (572)
Q Consensus       165 ~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~  242 (572)
                           ....++.|+.+|.++++.++..++++|..+..              .+.++.|..+++++++.+|..|+.+|.
T Consensus        51 -----~~~~~~~L~~~l~d~~~~VR~~a~~aL~~i~~--------------~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          51 -----DERAVEPLIKLLEDDSGFVRSGAARSLEQIGG--------------ERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             -----SHHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS--------------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             -----hhhhHHHHHhhhccchhHHHHHHHHHHHHhCc--------------cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence                 24579999999999999999999999987632              235788889999999999999988874

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.99  E-value=0.00082  Score=66.46  Aligned_cols=336  Identities=13%  Similarity=0.132  Sum_probs=197.5

Q ss_pred             hhHHHHHHHHhc-CChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCCh--HHHHHHhcCCCHHHHHHHHHHHHHcCCCC
Q 008257          172 DIVHNLLHLISN-TGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGAT--ISLVQFVEAPQNDLRLASIELIQNLSPHM  248 (572)
Q Consensus       172 ~~i~~Lv~lL~~-~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i--~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~  248 (572)
                      .++..++.+|.. +.+++.+..+-.+..|-..............+....  +++..++..++.-+...+..++..++...
T Consensus        74 ~~~~~~l~lL~~~sk~d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~~~~~~~~f~~~l~~~d~~~~~~s~~i~~ll~~~~  153 (477)
T d1ho8a_          74 KTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNG  153 (477)
T ss_dssp             TTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTT
T ss_pred             HHHHHHHHHHhhcCcHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCccchhHHHHHhccCchhHHHHHHHHHHHHHHhcc
Confidence            367888888874 566777666666665544322212223333333322  35555666666667777778888887542


Q ss_pred             --ChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHh--CCChHHHHHHHhhhccCC---
Q 008257          249 --GHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLD--EGAFGLIFSRVKSIQLGE---  321 (572)
Q Consensus       249 --~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~--~g~l~~Lv~lL~~~~~~~---  321 (572)
                        ..+..+.+..    ...+..-|.+..+ .+.+..|+..+..+.. .++.++.++.  ...+++|+.+|+..-...   
T Consensus       154 ~~~~~~~e~l~~----~~~~l~~l~~~~~-~~~~~i~v~~lq~llr-~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~  227 (477)
T d1ho8a_         154 LHNVKLVEKLLK----NNNLINILQNIEQ-MDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLAT  227 (477)
T ss_dssp             TCCHHHHHHHHH----CHHHHHHHHCTTC-HHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC-----
T ss_pred             ccccchHHHHHH----hhHHHHHhhcccc-cchHHHHHHHHHHHhc-CccHHHHHHHcccchHHHHHHHHHHHhcccccc
Confidence              2232233332    2334444444443 3777778888887776 6788888864  456899999887632110   


Q ss_pred             ----CCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHc--CchHHHHHHhccCCcHHHHHHHHHHHHHhhhhcccc
Q 008257          322 ----TRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEH--NLAALFIELLQSNGLDKVQMVSATALENLSLESKNL  395 (572)
Q Consensus       322 ----~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~--g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~  395 (572)
                          ..+.+...+++-.++-.++-++.    +++....+.+.  +.++.|+++++....+++-+.+..+|.|+.......
T Consensus       228 ~~~~~~~~~~~~Ql~Y~~ll~lWlLSF----~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~  303 (477)
T d1ho8a_         228 RIVATNSNHLGIQLQYHSLLLIWLLTF----NPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQ  303 (477)
T ss_dssp             --------CCHHHHHHHHHHHHHHHTT----SHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTT
T ss_pred             hhhcccCCCccHHHHHHHHHHHHHHHc----CHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhh
Confidence                11223456777788888888884    68888877775  459999999987657888899999999986432110


Q ss_pred             CCCCCCCCCCCCccccccccCCCccccccccccCccCccchh---hhhhccchHHHHHhhcC---CCHhHHHHHHHHHHH
Q 008257          396 TKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETF---CLLEGHAVEKLIALLDH---TNEKVVEASLAALST  469 (572)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~---~l~~~g~i~~Lv~lL~~---~~~~v~~~A~~aL~~  469 (572)
                                                            .+++   .++..++ +++++.|..   +|+++.+. +..|..
T Consensus       304 --------------------------------------~~~~~~~~~v~~~~-l~~l~~L~~r~~~Dedl~ed-l~~L~~  343 (477)
T d1ho8a_         304 --------------------------------------HKKVIKQLLLLGNA-LPTVQSLSERKYSDEELRQD-ISNLKE  343 (477)
T ss_dssp             --------------------------------------HHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHHHHH-HHHHHH
T ss_pred             --------------------------------------hhhHHHHHHHHcch-hHHHHHHhcCCCCCHHHHHH-HHHHHH
Confidence                                                  0111   1334444 456666644   56766443 233332


Q ss_pred             hhhc----------------------C-----c-cchhhHHHHHhc--CChHHHHHHHhh---------cCCHHHHHHHH
Q 008257          470 VIDD----------------------G-----V-DIEQGVMVLCEA--QGIKPILDVLLE---------KRTENLQRRAV  510 (572)
Q Consensus       470 l~~~----------------------~-----~-~~~~~~~~i~~~--g~i~~L~~lL~~---------~~~~~~~~~a~  510 (572)
                      ....                      +     + -|++++..+.+.  ..++.|+++|..         +.|+....-|+
T Consensus       344 ~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc  423 (477)
T d1ho8a_         344 ILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVAL  423 (477)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred             HHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhh
Confidence            2210                      0     0 122222222222  224678888841         22444444444


Q ss_pred             HHHHHHHcc-hhhhhhhcCCCCchHHHHHHhhcCCchhHHHHHHHHHhh
Q 008257          511 WVVERILRT-DDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHI  558 (572)
Q Consensus       511 ~~l~~l~~~-~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~L  558 (572)
                      .=+..++++ ++.+..+..-|+= ..+.+++.+.|++||..|-.|+..|
T Consensus       424 ~DiGefvr~~P~gr~il~~lg~K-~~vM~Lm~h~d~~Vr~eAL~avQkl  471 (477)
T d1ho8a_         424 NDITHVVELLPESIDVLDKTGGK-ADIMELLNHSDSRVKYEALKATQAI  471 (477)
T ss_dssp             HHHHHHHHHCTTHHHHHHHHSHH-HHHHHHTSCSSHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHCcchhHHHHHcCcH-HHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            446777765 6666555443333 4688999999999999999998776

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.92  E-value=0.0014  Score=59.24  Aligned_cols=75  Identities=12%  Similarity=0.011  Sum_probs=40.6

Q ss_pred             HHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHH-----HHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHH
Q 008257          208 SVVSAIKSSGATISLVQFVEAPQNDLRLASIELI-----QNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAA  282 (572)
Q Consensus       208 ~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L-----~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~  282 (572)
                      ++|.....+-.+..|..|++.+++.||..|+..|     ..|..+...++....... -..+.|..++..++.  .++..
T Consensus        57 e~Ra~Aa~~a~~~~L~~Ll~D~d~~VR~~AA~~Lp~~~L~~L~~D~d~~VR~~aa~~-l~~~~L~~Ll~D~d~--~VR~~  133 (233)
T d1lrva_          57 ERRAIAVRYSPVEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADR-LPLEQLEQMAADRDY--LVRAY  133 (233)
T ss_dssp             HHHHHHHTTSCGGGGGGGTTCSSHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHH-SCTGGGGGGTTCSSH--HHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHcCHHHHHHHhcCCChhHHHHHHhc-cCHHHHHHHhcCCCH--HHHHH
Confidence            3444444455677777888888888888877542     233333334443333322 224556666665553  55555


Q ss_pred             HHH
Q 008257          283 AVG  285 (572)
Q Consensus       283 A~~  285 (572)
                      ++.
T Consensus       134 aa~  136 (233)
T d1lrva_         134 VVQ  136 (233)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            543

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.76  E-value=0.00061  Score=61.78  Aligned_cols=64  Identities=16%  Similarity=0.102  Sum_probs=38.0

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHH-----HHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHH
Q 008257          174 VHNLLHLISNTGPTIECKLLQVL-----VGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIE  239 (572)
Q Consensus       174 i~~Lv~lL~~~~~~~q~~a~~aL-----~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~  239 (572)
                      +..|..|++.++++|+..++..|     ..+..+++  ..+|..+.+.=..+.|..++.+++..||..++.
T Consensus        68 ~~~L~~Ll~D~d~~VR~~AA~~Lp~~~L~~L~~D~d--~~VR~~aa~~l~~~~L~~Ll~D~d~~VR~~aa~  136 (233)
T d1lrva_          68 VEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDED--REVRITVADRLPLEQLEQMAADRDYLVRAYVVQ  136 (233)
T ss_dssp             GGGGGGGTTCSSHHHHHHHHTTSCSGGGGGTTTCSC--HHHHHHHHHHSCTGGGGGGTTCSSHHHHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHcCHHHHHHHhcCCC--hhHHHHHHhccCHHHHHHHhcCCCHHHHHHHHh
Confidence            34566677777888887776543     33444443  355555555545556666666666666666543

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.47  E-value=0.18  Score=46.38  Aligned_cols=215  Identities=10%  Similarity=0.113  Sum_probs=140.1

Q ss_pred             HHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhcc-CcchhHHHHhh-hH-HH-HHHhccc-CCHHHHHHHHHHHHHhhcC
Q 008257           32 MAENGRLQPLLTQILEGPQETKLSLAAFLGDLAL-NSDVKVLVART-VG-SC-LINIMKS-GNMQAREAALKALNQISSC  106 (572)
Q Consensus        32 i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~-~~~~k~~i~~~-g~-~~-Lv~lL~s-~~~~~~~~A~~aL~~Ls~~  106 (572)
                      +...+.+..|+..|..=+-+.|..++....++.. ..+.+....+. .. |- |..+++. ++++.-..+-..|+....+
T Consensus        65 ~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye~~eiAl~~G~mLREcik~  144 (330)
T d1upka_          65 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRH  144 (330)
T ss_dssp             HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHTS
T ss_pred             HHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcCCcchhhhhhHHHHHHHhh
Confidence            4455667777777777777777777766666543 22222111111 11 22 2233332 4667777888889998888


Q ss_pred             CCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccc--hhhhHHHHHHHHhcC
Q 008257          107 EPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLV--SEDIVHNLLHLISNT  184 (572)
Q Consensus       107 ~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~--~~~~i~~Lv~lL~~~  184 (572)
                      +.-.+.+.....+..+.+....++     -++-..|..++..+-.....    .+.   ..+.  -..+....-.||.++
T Consensus       145 e~lak~iL~s~~f~~fF~yv~~~~-----FdiasDAf~TfkelLt~hk~----~~a---efl~~Nyd~Ff~~~~~LL~s~  212 (330)
T d1upka_         145 EPLAKIILWSEQFYDFFRYVEMST-----FDIASDAFATFKDLLTRHKL----LSA---EFLEQHYDRFFSEYEKLLHSE  212 (330)
T ss_dssp             HHHHHHHHHSGGGGHHHHHTTCSS-----HHHHHHHHHHHHHHHHSSHH----HHH---HHHHHTHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHccHHHHHHHHHHcCCc-----hHHHHHHHHHHHHHHHhCHH----HHH---HHHHHhHHHHHHHHHHHhcCC
Confidence            888888888888888888887543     67777888888776542210    000   0011  123566677888899


Q ss_pred             ChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCC--CCChhHHHHHhc
Q 008257          185 GPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSP--HMGHELADALRG  258 (572)
Q Consensus       185 ~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~--~~~~~~~~~i~~  258 (572)
                      +.-.+.++++.|..+-.++.+.....+-+.+..-+..+..+|+++...+|-.|..++.-...  +.+.++...+..
T Consensus       213 NYVtrRqSlKLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpnKp~~I~~IL~~  288 (330)
T d1upka_         213 NYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLK  288 (330)
T ss_dssp             SHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCCCCHHHHHHHHH
Confidence            99999999999999987766532333334445567888999999999999999988877763  334566555544

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=92.21  E-value=1.7  Score=40.56  Aligned_cols=243  Identities=10%  Similarity=0.031  Sum_probs=127.7

Q ss_pred             CCCCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHH----HhhhH-
Q 008257            4 SKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLV----ARTVG-   78 (572)
Q Consensus         4 ~~s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i----~~~g~-   78 (572)
                      +.+.++..+.....+|..|+.+......---..-+-.|+++|..-+.+.=..   ....+....+.|..+    ...|. 
T Consensus        11 ~~~k~~~~~~~~~~~l~~L~~~~~~~v~~~~~~kF~~Lv~~lR~~~~e~l~~---v~~~~~~~~~~r~~~lDal~~~GT~   87 (336)
T d1lsha1          11 FVTKGKNLESEIHTVLKHLVENNQLSVHEDAPAKFLRLTAFLRNVDAGVLQS---IWHKLHQQKDYRRWILDAVPAMATS   87 (336)
T ss_dssp             CCCTTSCHHHHHHHHHHHHHHHCSSSCCTTHHHHHHHHHHHHTTSCHHHHHH---HHHHHTTSHHHHHHHHHHHHHHCSH
T ss_pred             hhhcCCCHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHCCCHHHHHH---HHHHHhcChhHHHHHHHHHHHhCCH
Confidence            3445566666677888888653221100000012456777777666443211   111222233334332    22232 


Q ss_pred             ---HHHHHhcccCCHHHHHHHHHHHHHhhcC-CCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCC
Q 008257           79 ---SCLINIMKSGNMQAREAALKALNQISSC-EPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGH  154 (572)
Q Consensus        79 ---~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~-~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~  154 (572)
                         ..+.+++.++..... .|...|..+... .++.+      .+..+..++.+... ...+.++..+.-++++++..--
T Consensus        88 ~a~~~i~~~I~~~~ls~~-ea~~~l~~l~~~~~Pt~~------~l~~~~~l~~~~~~-~~~~~l~~~a~La~gslv~~~c  159 (336)
T d1lsha1          88 EALLFLKRTLASEQLTSA-EATQIVASTLSNQQATRE------SLSYARELLNTSFI-RNRPILRKTAVLGYGSLVFRYC  159 (336)
T ss_dssp             HHHHHHHHHHHTTCSCHH-HHHHHHHHHHHTCCCCHH------HHHHHHHHHTCHHH-HTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHH-HHHHHHHHHhccCCCCHH------HHHHHHHHHcCccc-ccchhHHHHHHHHHHHHHHHHh
Confidence               456777776553332 344455555543 23332      23445556653210 0126677888888888874210


Q ss_pred             CCCccccCCCccccchhhhHHHHHHHH----hcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCC-
Q 008257          155 DFDSITVGPDNQTLVSEDIVHNLLHLI----SNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAP-  229 (572)
Q Consensus       155 ~~~~~~~~~~~~~l~~~~~i~~Lv~lL----~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~-  229 (572)
                      ....         -.....++.+...+    ...+.+-+.-++++|.|+...              ..++.|..++.+. 
T Consensus       160 ~~~~---------~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~p--------------~~i~~l~~~l~~~~  216 (336)
T d1lsha1         160 ANTV---------SCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP--------------NSIKKIQRFLPGQG  216 (336)
T ss_dssp             TTCS---------SCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG--------------GGHHHHHTTSTTSS
T ss_pred             cCCC---------CCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCCH--------------hHHHHHHHHhcccc
Confidence            0000         01123344444444    456666666788888887532              2467777777543 


Q ss_pred             ------CHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcC
Q 008257          230 ------QNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAEL  290 (572)
Q Consensus       230 ------~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L  290 (572)
                            ...+|..|+++|+.++...+..++          +.|..++.+...-.++|.+|..+|-..
T Consensus       217 ~~~~~~~~~vR~aAi~Alr~~~~~~p~~v~----------~~l~~i~~n~~e~~EvRiaA~~~lm~t  273 (336)
T d1lsha1         217 KSLDEYSTRVQAEAIMALRNIAKRDPRKVQ----------EIVLPIFLNVAIKSELRIRSCIVFFES  273 (336)
T ss_dssp             SCCCCSCHHHHHHHHHTTTTGGGTCHHHHH----------HHHHHHHHCTTSCHHHHHHHHHHHHHT
T ss_pred             cccccccHHHHHHHHHHHHHhhhcCcHHHH----------HHHHHHHcCCCCChHHHHHHHHHHHhc
Confidence                  357999999999999866443332          334444444432258999998887665

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.02  E-value=1  Score=41.13  Aligned_cols=144  Identities=10%  Similarity=0.031  Sum_probs=115.5

Q ss_pred             CCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhcc-Ccch-hHHHHhh--hH-HH
Q 008257            6 SENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLAL-NSDV-KVLVART--VG-SC   80 (572)
Q Consensus         6 s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~-~~~~-k~~i~~~--g~-~~   80 (572)
                      .++++..-.+-.+|+.....+.-.+.+.....+..+.++...++=++...|..++..+-. +... ...+...  .. ..
T Consensus       125 ye~~eiAl~~G~mLREcik~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~  204 (330)
T d1upka_         125 YESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSE  204 (330)
T ss_dssp             GGSTTTHHHHHHHHHHHHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHH
T ss_pred             cCCcchhhhhhHHHHHHHhhHHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHH
Confidence            467777888889999999999888999999999999999999999999999988888654 3322 2233322  23 66


Q ss_pred             HHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHH----HcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCC
Q 008257           81 LINIMKSGNMQAREAALKALNQISSCEPSAKVLI----HAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGH  154 (572)
Q Consensus        81 Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv----~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~  154 (572)
                      .-++|.|++-..++.+++.|+.+-.+..|...|.    +..-+..++.+|++.     +..+|-.|..+..-.+.+..
T Consensus       205 ~~~LL~s~NYVtrRqSlKLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~-----sk~Iq~EAFhVFKvFVANpn  277 (330)
T d1upka_         205 YEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-----SRNIQFEAFHVFKVFVANPN  277 (330)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-----CHHHHHHHHHHHHHHHHCSS
T ss_pred             HHHHhcCCchHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCc-----hhhHHHHhhhHhhhhhcCCC
Confidence            7889999999999999999999999999976653    455688889999864     38899999999888877543

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=88.73  E-value=8.9  Score=35.25  Aligned_cols=241  Identities=11%  Similarity=0.121  Sum_probs=136.1

Q ss_pred             HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHH----HHHHcCC---hHHHHHHHhccCCCCCCcchHHHHHHHHHHHHh
Q 008257           79 SCLINIMKSGNMQAREAALKALNQISSCEPSAK----VLIHAGI---LPPLVKDLFTVGSNHLPMRLKEVSATILANVVN  151 (572)
Q Consensus        79 ~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~----~iv~~G~---i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~  151 (572)
                      -.||++|+.-+.+.-+....   .+...++.+.    .+...|-   +..+.+++.+..      .-...|+..|..++.
T Consensus        46 ~~Lv~~lR~~~~e~l~~v~~---~~~~~~~~r~~~lDal~~~GT~~a~~~i~~~I~~~~------ls~~ea~~~l~~l~~  116 (336)
T d1lsha1          46 LRLTAFLRNVDAGVLQSIWH---KLHQQKDYRRWILDAVPAMATSEALLFLKRTLASEQ------LTSAEATQIVASTLS  116 (336)
T ss_dssp             HHHHHHHTTSCHHHHHHHHH---HHTTSHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTC------SCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHH---HHhcChhHHHHHHHHHHHhCCHHHHHHHHHHHHcCC------CCHHHHHHHHHHHhc
Confidence            46777787766554333222   2222222332    3334444   455666676542      223467777777875


Q ss_pred             cCCCCCccccCCCccccchhhhHHHHHHHHhc----CChhHHHHHHHHHHHc----cCCCCccHHHHHHHHhcCChHHHH
Q 008257          152 SGHDFDSITVGPDNQTLVSEDIVHNLLHLISN----TGPTIECKLLQVLVGL----TSSPTTVLSVVSAIKSSGATISLV  223 (572)
Q Consensus       152 ~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~----~~~~~q~~a~~aL~~l----~~~~~~~~~~~~~i~~~g~i~~Lv  223 (572)
                      ...              -....+..+..++.+    .++.++..+.-++..+    |.....-        ....++.+.
T Consensus       117 ~~~--------------Pt~~~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~--------~~~~~~~l~  174 (336)
T d1lsha1         117 NQQ--------------ATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSC--------PDELLQPLH  174 (336)
T ss_dssp             TCC--------------CCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSC--------CGGGTHHHH
T ss_pred             cCC--------------CCHHHHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCCCCC--------cHHHHHHHH
Confidence            432              124567778888874    4566777666655544    3221110        011233333


Q ss_pred             H----HhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCC----C-ChHHHHHHHHHHhcCCCCc
Q 008257          224 Q----FVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENV----G-ISKEQAAAVGLLAELPERD  294 (572)
Q Consensus       224 ~----lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~----~-~~~~~~~A~~~L~~L~~~~  294 (572)
                      .    .++.++.+.+..++++|+|+...             ..++.|..++....    . ...++..|++++.+++..+
T Consensus       175 ~~l~~~~~~~~~~~~~~~LkaLGN~g~p-------------~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~  241 (336)
T d1lsha1         175 DLLSQSSDRAKEEEIVLALKALGNAGQP-------------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD  241 (336)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHTCG-------------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC
T ss_pred             HHHHHhhcccchHHHHHHHHHHhccCCH-------------hHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcC
Confidence            3    44566767777888999988521             23455555554321    1 1479999999999998766


Q ss_pred             HHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCc
Q 008257          295 LGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGL  374 (572)
Q Consensus       295 ~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~  374 (572)
                      +...+        +.+..+..+..        .+.+++-.|..+|.+.      +|...       .+..+...+....+
T Consensus       242 p~~v~--------~~l~~i~~n~~--------e~~EvRiaA~~~lm~t------~P~~~-------~l~~i~~~l~~E~~  292 (336)
T d1lsha1         242 PRKVQ--------EIVLPIFLNVA--------IKSELRIRSCIVFFES------KPSVA-------LVSMVAVRLRREPN  292 (336)
T ss_dssp             HHHHH--------HHHHHHHHCTT--------SCHHHHHHHHHHHHHT------CCCHH-------HHHHHHHHHTTCSC
T ss_pred             cHHHH--------HHHHHHHcCCC--------CChHHHHHHHHHHHhc------CCCHH-------HHHHHHHHHHhCcH
Confidence            54432        34555665421        3556666666666553      23211       23445666666558


Q ss_pred             HHHHHHHHHHHHHhhhhc
Q 008257          375 DKVQMVSATALENLSLES  392 (572)
Q Consensus       375 ~~vk~~Aa~aL~~ls~~~  392 (572)
                      ..|....-..|.+++.++
T Consensus       293 ~QV~sfv~S~l~~la~s~  310 (336)
T d1lsha1         293 LQVASFVYSQMRSLSRSS  310 (336)
T ss_dssp             HHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHhCC
Confidence            889888888899988643