Citrus Sinensis ID: 008265
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 572 | 2.2.26 [Sep-21-2011] | |||||||
| Q8GYL7 | 852 | Pentatricopeptide repeat- | yes | no | 0.982 | 0.659 | 0.536 | 1e-174 | |
| Q9FIX3 | 747 | Pentatricopeptide repeat- | no | no | 0.576 | 0.441 | 0.232 | 2e-19 | |
| Q9S7Q2 | 862 | Pentatricopeptide repeat- | no | no | 0.5 | 0.331 | 0.230 | 9e-19 | |
| Q0WLC6 | 1089 | Pentatricopeptide repeat- | no | no | 0.437 | 0.229 | 0.231 | 3e-18 | |
| Q5G1S8 | 1440 | Pentatricopeptide repeat- | no | no | 0.433 | 0.172 | 0.230 | 7e-18 | |
| P0C894 | 761 | Putative pentatricopeptid | no | no | 0.526 | 0.395 | 0.256 | 7e-18 | |
| Q9M907 | 871 | Pentatricopeptide repeat- | no | no | 0.519 | 0.340 | 0.230 | 8e-18 | |
| Q9CA58 | 763 | Putative pentatricopeptid | no | no | 0.498 | 0.373 | 0.236 | 2e-17 | |
| Q9M9X9 | 987 | Pentatricopeptide repeat- | no | no | 0.512 | 0.296 | 0.253 | 2e-17 | |
| Q6NQ83 | 619 | Pentatricopeptide repeat- | no | no | 0.493 | 0.455 | 0.239 | 6e-17 |
| >sp|Q8GYL7|PP361_ARATH Pentatricopeptide repeat-containing protein At5g02830, chloroplastic OS=Arabidopsis thaliana GN=At5g02830 PE=2 SV=3 | Back alignment and function desciption |
|---|
Score = 610 bits (1573), Expect = e-174, Method: Compositional matrix adjust.
Identities = 311/580 (53%), Positives = 405/580 (69%), Gaps = 18/580 (3%)
Query: 3 VVFGSSSSSSSAIVATQTRLY------NHRNKPNKHPVTKLFP---LASSSSLSSIPTVH 53
+VFGSSS+ ++ R Y N + K N TKL P S S +S+ H
Sbjct: 6 IVFGSSSAITNP-HHHHRRCYATAPESNRKTKSNS-SFTKLLPSLPQQHSPSPASVSATH 63
Query: 54 SSQTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEG-NVSKFASMLS 112
S + + VR +YYAD ASKLA+DGR+E+ A+I E++ G NV++FASM+
Sbjct: 64 SLSSHFSNVVRWIPDGSLEYYADFASKLAEDGRIEDVALIAETLAAESGANVARFASMVD 123
Query: 113 LEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVE 172
++++ GI ++R+G+I+ VV LK++ ++G+APL+L D S KL++ + + + +S +VE
Sbjct: 124 YDLLSKGISSNLRQGKIESVVYTLKRIEKVGIAPLDLVDDSSVKLMRKQFRAMANSVQVE 183
Query: 173 MFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFG 232
+ LME+L +KEL + F +V+ CV + LAIRYAC++P ++L C + FG
Sbjct: 184 KAIDLMEILAGLGFKIKELVDPFDVVKSCVEISNPQLAIRYACLLPHTELLLCRIIHGFG 243
Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
KK D+VS + AY+A K+ L +PNMYICRT+IDVCG+CGDY+KSR IYEDL +N+ NIY
Sbjct: 244 KKGDMVSVMTAYEACKQILDTPNMYICRTMIDVCGLCGDYVKSRYIYEDLLKENIKPNIY 303
Query: 293 VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
V NSLMNVN+HDL +TL+VYKNMQ L V ADM SYNILLK CCLAG LAQ+IY E K
Sbjct: 304 VINSLMNVNSHDLGYTLKVYKNMQILDVTADMTSYNILLKTCCLAGRVDLAQDIYKEAKR 363
Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
+E+ G+LKLD FTY TI+KVFADAK W+ ALKVK+DM S GVTPNT TWSSLI+ACANAG
Sbjct: 364 MESSGLLKLDAFTYCTIIKVFADAKMWKWALKVKDDMKSVGVTPNTHTWSSLISACANAG 423
Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED- 471
LVEQA HLFEEML +GCEPNSQC NILL ACVEACQ+DRAFRLF+SW S +L D
Sbjct: 424 LVEQANHLFEEMLASGCEPNSQCFNILLHACVEACQYDRAFRLFQSWKGSSVNESLYADD 483
Query: 472 --YDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDY 529
G T + +++ S+ N + NS Y KRF FKPTT TYNIL+KAC TDY
Sbjct: 484 IVSKGRTSSPNILKNNGPGSLVNRNS---NSPYIQASKRFCFKPTTATYNILLKACGTDY 540
Query: 530 YRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
YR K LM+EM+++GLSPN I+W+ LID CGGSG+VEGA++
Sbjct: 541 YRGKELMDEMKSLGLSPNQITWSTLIDMCGGSGDVEGAVR 580
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 85/365 (23%), Positives = 166/365 (45%), Gaps = 35/365 (9%)
Query: 234 KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYV 293
KR++ A + + SPN++ +I G+ + +++ + ++ N+
Sbjct: 183 KRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVT 242
Query: 294 FNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351
+N+L++ + ++ ++M G+ ++ SYN+++ C G +E+ +
Sbjct: 243 YNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRM---KEVSFVLT 299
Query: 352 HLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411
+ +G LD TY+T++K + + AL + +ML G+TP+ IT++SLI++ A
Sbjct: 300 EMNRRGY-SLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKA 358
Query: 412 GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT---LSKTQVAL 468
G + +AM ++M G PN + L+ + + A+R+ R S + V
Sbjct: 359 GNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTY 418
Query: 469 GEDYDGN------TDRISNMEHKDKQSITNTPNFVPNSH-YSSFDKRF------------ 509
+G+ D I+ +E ++ + +P+ V S S F + +
Sbjct: 419 NALINGHCVTGKMEDAIAVLEDMKEKGL--SPDVVSYSTVLSGFCRSYDVDEALRVKREM 476
Query: 510 ---SFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNV 564
KP T TY+ L++ C +A L EM VGL P+ ++T LI+A G++
Sbjct: 477 VEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDL 536
Query: 565 EGALQ 569
E ALQ
Sbjct: 537 EKALQ 541
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850, chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 95.5 bits (236), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 79/342 (23%), Positives = 147/342 (42%), Gaps = 56/342 (16%)
Query: 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN 290
G++ L L +D S +++ +I+ G G Y S + + ++++ ++ +
Sbjct: 151 LGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNEKISPS 210
Query: 291 IYVFNSLMNVNAH---DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
I +N+++N A D + L ++ M+ G+ D+ +YN LL AC + G L E
Sbjct: 211 ILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRG---LGDEAE 267
Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
+ + G++ D+ TYS +V+ F + + + +M S G P+ +++ L+ A
Sbjct: 268 MVFRTMNDGGIVP-DLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEA 326
Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVA 467
A +G +++AM +F +M AGC PN+ ++LL ++ ++D +LF S
Sbjct: 327 YAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSS----- 381
Query: 468 LGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT 527
NTD P TYNIL++
Sbjct: 382 -------NTD-----------------------------------PDAATYNILIEVFGE 399
Query: 528 DYY--RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
Y V L ++M + P+ ++ +I ACG G E A
Sbjct: 400 GGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDA 441
|
Involved in plastid gene expression. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WLC6|PP349_ARATH Pentatricopeptide repeat-containing protein At4g34830, chloroplastic OS=Arabidopsis thaliana GN=At4g34830/At4g34820 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 94.0 bits (232), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/307 (23%), Positives = 128/307 (41%), Gaps = 57/307 (18%)
Query: 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV----NAHDLKFTLE 310
N++ +ID C G K+ Y LRS+NV + VFN+L++ A D F +
Sbjct: 536 NLHTFGALIDGCARAGQVAKAFGAYGILRSKNVKPDRVVFNALISACGQSGAVDRAFDVL 595
Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
+ + D S L+KACC AG A+E+Y + +G ++ Y+ V
Sbjct: 596 AEMKAETHPIDPDHISIGALMKACCNAGQVERAKEVYQMIHKYGIRGTPEV----YTIAV 651
Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
+ + W A + +DM VTP+ + +S+LI+ +A ++++A + ++ G
Sbjct: 652 NSCSKSGDWDFACSIYKDMKEKDVTPDEVFFSALIDVAGHAKMLDEAFGILQDAKSQGIR 711
Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490
+ + L+ AC A + +A L+
Sbjct: 712 LGTISYSSLMGACCNAKDWKKALELYEKI------------------------------- 740
Query: 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNH 548
K +PT +T N L+ A C KA+ ++E++T+GL PN
Sbjct: 741 ----------------KSIKLRPTISTMNALITALCEGNQLPKAMEYLDEIKTLGLKPNT 784
Query: 549 ISWTILI 555
I++++L+
Sbjct: 785 ITYSMLM 791
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5G1S8|PP241_ARATH Pentatricopeptide repeat-containing protein At3g18110, chloroplastic OS=Arabidopsis thaliana GN=EMB1270 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 92.8 bits (229), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 62/269 (23%), Positives = 123/269 (45%), Gaps = 21/269 (7%)
Query: 207 VNLAIRYACIVPRADILFCNFVREFGKKRDLVS----------------ALRAYDASKKH 250
+N ++ + P + + VR G + D ++ A++ ++ + H
Sbjct: 267 INARLKSGGLTPNLAVELLDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAH 326
Query: 251 LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFT 308
P+++ +I V G CG ++ ++ +L + + +NSL+ A + +
Sbjct: 327 RCQPDLWTYNAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKV 386
Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
EVY+ MQK+G D +YN ++ G LA ++Y ++K L + D TY+
Sbjct: 387 KEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNP---DAITYTV 443
Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
++ A A + +ML G+ P T+S+LI A AG E+A F ML++G
Sbjct: 444 LIDSLGKANRTVEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSG 503
Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFR 457
+P++ +++L + + +A+ L+R
Sbjct: 504 TKPDNLAYSVMLDVLLRGNETRKAWGLYR 532
|
May play a role in embryogenesis. Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 92.8 bits (229), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 83/323 (25%), Positives = 136/323 (42%), Gaps = 22/323 (6%)
Query: 252 SSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTL 309
+ P ++ +ID GD +R ++E+++ + + + +NS+++ L T+
Sbjct: 258 ARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTV 317
Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
++ M+ + D+ +YN L+ C G + E Y E+K G LK +V +YST+
Sbjct: 318 CFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMK---GNG-LKPNVVSYSTL 373
Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
V F Q A+K DM G+ PN T++SLI+A G + A L EMLQ G
Sbjct: 374 VDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGV 433
Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ- 488
E N L+ +A + A LF + L Y+ ++ D+
Sbjct: 434 EWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLAS-YNALIHGFVKAKNMDRAL 492
Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSP 546
+ N K KP Y + C+ K +MNEM+ G+
Sbjct: 493 ELLNEL------------KGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKA 540
Query: 547 NHISWTILIDACGGSGNVEGALQ 569
N + +T L+DA SGN L
Sbjct: 541 NSLIYTTLMDAYFKSGNPTEGLH 563
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920 OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 92.4 bits (228), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 83/360 (23%), Positives = 150/360 (41%), Gaps = 63/360 (17%)
Query: 222 ILFCNFVREF---GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI 278
I++ + ++ F G+K D + Y SP++ + T +D G+ K RA+
Sbjct: 483 IVYTSLIKNFFNHGRKED---GHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAM 539
Query: 279 YEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL 336
+E+++++ + ++ L++ + A T E++ +M++ G + D +YNI++ C
Sbjct: 540 FEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCK 599
Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
G A ++ E+K KG + V TY +++ A A + E+ S +
Sbjct: 600 CGKVNKAYQLLEEMK---TKG-FEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIEL 655
Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
N + +SSLI+ G +++A + EE++Q G PN N LL A V+A + + A F
Sbjct: 656 NVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCF 715
Query: 457 RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTT 516
+S K P
Sbjct: 716 QSM-----------------------------------------------KELKCTPNQV 728
Query: 517 TYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNV--EGALQCRF 572
TY IL+ C + + EM+ G+ P+ IS+T +I +GN+ GAL RF
Sbjct: 729 TYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRF 788
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580 OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/326 (23%), Positives = 150/326 (46%), Gaps = 41/326 (12%)
Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTL 309
P+ + R++ID G+C G+ ++ A++ + + + N+ ++N+L+ N +
Sbjct: 354 PDQFTYRSLID--GLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAA 411
Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
++ M + G++ ++ ++NIL+ C G A G VK + +KG D+FT++ +
Sbjct: 412 QLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDAD---GLVKVMISKGYFP-DIFTFNIL 467
Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
+ ++ + AL++ + ML GV P+ T++SL+N E M ++ M++ GC
Sbjct: 468 IHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGC 527
Query: 430 EPNSQCCNILLQACVEACQFDRAFRLF---RSWTLSKTQVALGEDYDG---NTDRISNME 483
PN NILL++ + D A L ++ +++ V G DG N D
Sbjct: 528 APNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDL----- 582
Query: 484 HKDKQSITNTPNFVPNSHYSSFDKR---FSFKPTTTTYNILMKACCT--DYYRVKALMNE 538
+ Y+ F K + +T TYNI++ A + + L E
Sbjct: 583 ---------------DGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQE 627
Query: 539 MRTVGLSPNHISWTILIDACGGSGNV 564
M L P+ ++ +++D +GNV
Sbjct: 628 MVDRCLGPDGYTYRLMVDGFCKTGNV 653
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protein At1g06710, mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 87/343 (25%), Positives = 143/343 (41%), Gaps = 50/343 (14%)
Query: 243 AYDASKKHLSSPNM--YICRTIIDVCGICGDYMK--------SRAIYEDLRSQNVTLNIY 292
AY KK + +M Y+ I+ + ICGD + Y ++ + V LN
Sbjct: 391 AYKLLKKMVKCGHMPGYVVYNIL-IGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKI 449
Query: 293 VFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
+S +A + V + M G + D ++Y+ +L C A LA ++ E+
Sbjct: 450 NVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEM 509
Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
K +G L DV+TY+ +V F A + A K +M G TPN +T+++LI+A
Sbjct: 510 K----RGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLK 565
Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE 470
A V A LFE ML GC PN + L+ +A Q ++A ++F SK
Sbjct: 566 AKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSK------- 618
Query: 471 DYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYY 530
+ P+ + ++ +D S +P TY L+ C +
Sbjct: 619 ---------------------DVPDV--DMYFKQYDDN-SERPNVVTYGALLDGFCKSHR 654
Query: 531 --RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQCR 571
+ L++ M G PN I + LID G ++ A + +
Sbjct: 655 VEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVK 697
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 89.7 bits (221), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 73/305 (23%), Positives = 139/305 (45%), Gaps = 23/305 (7%)
Query: 265 VCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGV 320
+ G+C G + + ++ +N+ ++ F++L++V + K E+Y M G+
Sbjct: 287 IGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGI 346
Query: 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380
D +YN L+ C A +++ + +KG + D+ TYS ++ + AK
Sbjct: 347 APDTITYNSLIDGFCKENCLHEANQMF---DLMVSKGC-EPDIVTYSILINSYCKAKRVD 402
Query: 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440
+++ ++ S G+ PNTIT+++L+ +G + A LF+EM+ G P+ ILL
Sbjct: 403 DGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILL 462
Query: 441 QACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNS 500
+ + ++A +F S+ + +G Y+ + N D S
Sbjct: 463 DGLCDNGELNKALEIFEKMQKSRMTLGIGI-YNIIIHGMCNASKVDDAW----------S 511
Query: 501 HYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDA- 557
+ S + KP TYN+++ C +A L +M+ G +P+ ++ ILI A
Sbjct: 512 LFCSLSDK-GVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAH 570
Query: 558 CGGSG 562
GGSG
Sbjct: 571 LGGSG 575
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 572 | ||||||
| 225439759 | 842 | PREDICTED: pentatricopeptide repeat-cont | 0.905 | 0.615 | 0.601 | 1e-179 | |
| 224068636 | 828 | predicted protein [Populus trichocarpa] | 0.903 | 0.624 | 0.600 | 1e-178 | |
| 39104565 | 852 | unknown protein [Arabidopsis thaliana] | 0.982 | 0.659 | 0.536 | 1e-172 | |
| 30679784 | 852 | pentatricopeptide repeat-containing prot | 0.982 | 0.659 | 0.536 | 1e-172 | |
| 449521499 | 855 | PREDICTED: LOW QUALITY PROTEIN: pentatri | 0.982 | 0.657 | 0.564 | 1e-171 | |
| 449448705 | 849 | PREDICTED: pentatricopeptide repeat-cont | 0.979 | 0.659 | 0.566 | 1e-170 | |
| 7413558 | 798 | putative protein [Arabidopsis thaliana] | 0.958 | 0.686 | 0.525 | 1e-164 | |
| 255568444 | 786 | pentatricopeptide repeat-containing prot | 0.790 | 0.575 | 0.586 | 1e-158 | |
| 356572391 | 811 | PREDICTED: pentatricopeptide repeat-cont | 0.923 | 0.651 | 0.514 | 1e-150 | |
| 357510555 | 829 | Pentatricopeptide repeat-containing prot | 0.844 | 0.582 | 0.543 | 1e-148 |
| >gi|225439759|ref|XP_002273255.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic [Vitis vinifera] gi|297741486|emb|CBI32618.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 636 bits (1640), Expect = e-179, Method: Compositional matrix adjust.
Identities = 320/532 (60%), Positives = 405/532 (76%), Gaps = 14/532 (2%)
Query: 40 LASSSSLSSIPTVHS--SQTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESV 97
L +S+S P + S S+ LLS VR DL++ Y+D+A+KL +DGR ++F+ + E++
Sbjct: 36 LLTSTSARLSPPISSLRSRHPLLSDVRWDLNN----YSDLATKLVQDGRFDDFSTMAETL 91
Query: 98 VVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKL 157
++S +S+ +E+V++GI +REGR+ CVV VL+K+++LG+ PLELFDGS +L
Sbjct: 92 ILSGVELSQL-----VELVSAGISGLLREGRVYCVVEVLRKVDKLGICPLELFDGSTLEL 146
Query: 158 LKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV 217
L EC+R+L+ G+VE V L+E+L+ F PVK+L E +++CVNK + NLA+RYACI+
Sbjct: 147 LSKECRRILNCGQVEEVVELIEILDGFHFPVKKLLEPLDFIKICVNKRNPNLAVRYACIL 206
Query: 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
P A ILFC + EFGKKRDL SAL A++ASK+ L PNMY RT+IDVCG+C Y KSR
Sbjct: 207 PHAQILFCTIIHEFGKKRDLGSALTAFEASKQKLIGPNMYCYRTMIDVCGLCSHYQKSRY 266
Query: 278 IYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
IYE+L +Q +T NIYVFNSLMNVN HDL +T VYKNMQ LGV ADMASYNILLKACC+A
Sbjct: 267 IYEELLAQKITPNIYVFNSLMNVNVHDLSYTFNVYKNMQNLGVTADMASYNILLKACCVA 326
Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
G LAQEIY EV++LE+ G+LKLDVFTYSTI+KVFADAK WQMALK+KEDMLSAGV PN
Sbjct: 327 GRVDLAQEIYREVQNLESNGMLKLDVFTYSTIIKVFADAKLWQMALKIKEDMLSAGVIPN 386
Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
T+TWS+LI++CANAG+ EQA+ LF+EML AGCEPNSQC NILL ACVEACQ+DRAFRLF+
Sbjct: 387 TVTWSALISSCANAGITEQAIQLFKEMLLAGCEPNSQCYNILLHACVEACQYDRAFRLFQ 446
Query: 458 SWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTT 517
SW S+ Q +E K + IT+ PN + NSH+ SF K F F PTTTT
Sbjct: 447 SWKDSRFQEI---SGGTGNGNTVGVELKHQNCITSMPNCLSNSHHLSFSKSFPFTPTTTT 503
Query: 518 YNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
YNILMKAC TDYYR KALM+EM+T GLSPNHISW+ILID CGG+GN+ GA++
Sbjct: 504 YNILMKACGTDYYRAKALMDEMKTAGLSPNHISWSILIDICGGTGNIVGAVR 555
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224068636|ref|XP_002326162.1| predicted protein [Populus trichocarpa] gi|222833355|gb|EEE71832.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 633 bits (1632), Expect = e-178, Method: Compositional matrix adjust.
Identities = 316/526 (60%), Positives = 386/526 (73%), Gaps = 9/526 (1%)
Query: 49 IPTVHSSQTALLSTV----RRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNV 104
IP VHS LLST+ + SS DY+A++ASKLA+DGRL++F MI ESV+ S
Sbjct: 45 IPAVHSRSPPLLSTIPFRQNHNSSSLLDYHANLASKLAEDGRLQDFVMIAESVIASGVEP 104
Query: 105 SKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQR 164
S F + LS+ VA GI K++++G +DCVV LKK ELGV+ L+ DG LLK E R
Sbjct: 105 SSFVAALSVGPVAKGISKNLQQGNVDCVVRFLKKTEELGVSTLKFLDGVAIDLLKKEFIR 164
Query: 165 LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVP-RADIL 223
+++ G+VE V +ME L F KEL + I+++CV+K + +A+RYA I P IL
Sbjct: 165 IVNCGDVEQVVYIMETLAGFCFSFKELVDPSYIIKICVDKLNPKMAVRYAAIFPGEGRIL 224
Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
FCN + EFG+K L SAL AYD +K LS PNMY+ RTIIDVCG+CGDYMKSR IYEDL
Sbjct: 225 FCNIISEFGRKGHLDSALVAYDEAKHKLSVPNMYLHRTIIDVCGLCGDYMKSRYIYEDLI 284
Query: 284 SQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLA 343
++ V N+YVFNSLMNVNAHDL +T V+KNMQ LGV AD+ASYNILLKACC+AG LA
Sbjct: 285 NRKVIPNVYVFNSLMNVNAHDLGYTFSVFKNMQNLGVTADVASYNILLKACCIAGRVDLA 344
Query: 344 QEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403
++IY EVK LE+ VLKLDVFTY IVK+FADAK WQMALK+KEDMLS+GVTPN WSS
Sbjct: 345 KDIYREVKQLESAEVLKLDVFTYCMIVKIFADAKMWQMALKIKEDMLSSGVTPNMHIWSS 404
Query: 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463
LI+ACANAGLVEQA+ LFEEML +GC+PNSQCCNILL ACV+ACQ+DRAFRLF+ W S+
Sbjct: 405 LISACANAGLVEQAIQLFEEMLLSGCKPNSQCCNILLHACVQACQYDRAFRLFQCWKGSE 464
Query: 464 TQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK 523
Q D+ GN D I EH K N VPNSH+ +F K+F F PT TY++LMK
Sbjct: 465 AQEVFHGDHSGNADEI---EHAQKHC-PNMTTIVPNSHHLNFIKKFPFTPTPATYHMLMK 520
Query: 524 ACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
AC +DY+R KALM+EM+TVG+SPNHISW+ILID CG SGNV GA+Q
Sbjct: 521 ACGSDYHRAKALMDEMKTVGISPNHISWSILIDICGVSGNVSGAVQ 566
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|39104565|dbj|BAC42187.2| unknown protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 610 bits (1574), Expect = e-172, Method: Compositional matrix adjust.
Identities = 311/580 (53%), Positives = 405/580 (69%), Gaps = 18/580 (3%)
Query: 3 VVFGSSSSSSSAIVATQTRLY------NHRNKPNKHPVTKLFP---LASSSSLSSIPTVH 53
+VFGSSS+ ++ R Y N + K N TKL P S S +S+ H
Sbjct: 6 IVFGSSSAITNP-HHHHRRCYATAPESNRKTKSNS-SFTKLLPSLPQQHSPSPASVSATH 63
Query: 54 SSQTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEG-NVSKFASMLS 112
S + + VR +YYAD ASKLA+DGR+E+ A+I E++ G NV++FASM+
Sbjct: 64 SLSSHFSNVVRWIPDGSLEYYADFASKLAEDGRIEDVALIAETLAAESGANVARFASMVD 123
Query: 113 LEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVE 172
++++ GI ++R+G+I+ VV LK++ ++G+APL+L D S KL++ + + + +S +VE
Sbjct: 124 YDLLSKGISSNLRQGKIESVVYTLKRIEKVGIAPLDLVDDSSVKLMRKQFRAMANSVQVE 183
Query: 173 MFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFG 232
+ LME+L +KEL + F +V+ CV + LAIRYAC++P ++L C + FG
Sbjct: 184 KAIDLMEILAGLGFKIKELVDPFDVVKSCVEISNPQLAIRYACLLPHTELLLCRIIHGFG 243
Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
KK D+VS + AY+A K+ L +PNMYICRT+IDVCG+CGDY+KSR IYEDL +N+ NIY
Sbjct: 244 KKGDMVSVMTAYEACKQILDTPNMYICRTMIDVCGLCGDYVKSRYIYEDLLKENIKPNIY 303
Query: 293 VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
V NSLMNVN+HDL +TL+VYKNMQ L V ADM SYNILLK CCLAG LAQ+IY E K
Sbjct: 304 VINSLMNVNSHDLGYTLKVYKNMQILDVTADMTSYNILLKTCCLAGRVDLAQDIYKEAKR 363
Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
+E+ G+LKLD FTY TI+KVFADAK W+ ALKVK+DM S GVTPNT TWSSLI+ACANAG
Sbjct: 364 MESSGLLKLDAFTYCTIIKVFADAKMWKWALKVKDDMKSVGVTPNTHTWSSLISACANAG 423
Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED- 471
LVEQA HLFEEML +GCEPNSQC NILL ACVEACQ+DRAFRLF+SW S +L D
Sbjct: 424 LVEQANHLFEEMLASGCEPNSQCFNILLHACVEACQYDRAFRLFQSWKGSSVNESLYADD 483
Query: 472 --YDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDY 529
G T + +++ S+ N + NS Y KRF FKPTT TYNIL+KAC TDY
Sbjct: 484 IVSKGRTSSPNILKNNGPGSLVNRNS---NSPYIQASKRFCFKPTTATYNILLKACGTDY 540
Query: 530 YRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
YR K LM+EM+++GLSPN I+W+ LID CGGSG+VEGA++
Sbjct: 541 YRGKELMDEMKSLGLSPNQITWSTLIDMCGGSGDVEGAVR 580
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30679784|ref|NP_195903.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|332278227|sp|Q8GYL7.3|PP361_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g02830, chloroplastic; Flags: Precursor gi|332003140|gb|AED90523.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 610 bits (1573), Expect = e-172, Method: Compositional matrix adjust.
Identities = 311/580 (53%), Positives = 405/580 (69%), Gaps = 18/580 (3%)
Query: 3 VVFGSSSSSSSAIVATQTRLY------NHRNKPNKHPVTKLFP---LASSSSLSSIPTVH 53
+VFGSSS+ ++ R Y N + K N TKL P S S +S+ H
Sbjct: 6 IVFGSSSAITNP-HHHHRRCYATAPESNRKTKSNS-SFTKLLPSLPQQHSPSPASVSATH 63
Query: 54 SSQTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEG-NVSKFASMLS 112
S + + VR +YYAD ASKLA+DGR+E+ A+I E++ G NV++FASM+
Sbjct: 64 SLSSHFSNVVRWIPDGSLEYYADFASKLAEDGRIEDVALIAETLAAESGANVARFASMVD 123
Query: 113 LEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVE 172
++++ GI ++R+G+I+ VV LK++ ++G+APL+L D S KL++ + + + +S +VE
Sbjct: 124 YDLLSKGISSNLRQGKIESVVYTLKRIEKVGIAPLDLVDDSSVKLMRKQFRAMANSVQVE 183
Query: 173 MFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFG 232
+ LME+L +KEL + F +V+ CV + LAIRYAC++P ++L C + FG
Sbjct: 184 KAIDLMEILAGLGFKIKELVDPFDVVKSCVEISNPQLAIRYACLLPHTELLLCRIIHGFG 243
Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
KK D+VS + AY+A K+ L +PNMYICRT+IDVCG+CGDY+KSR IYEDL +N+ NIY
Sbjct: 244 KKGDMVSVMTAYEACKQILDTPNMYICRTMIDVCGLCGDYVKSRYIYEDLLKENIKPNIY 303
Query: 293 VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
V NSLMNVN+HDL +TL+VYKNMQ L V ADM SYNILLK CCLAG LAQ+IY E K
Sbjct: 304 VINSLMNVNSHDLGYTLKVYKNMQILDVTADMTSYNILLKTCCLAGRVDLAQDIYKEAKR 363
Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
+E+ G+LKLD FTY TI+KVFADAK W+ ALKVK+DM S GVTPNT TWSSLI+ACANAG
Sbjct: 364 MESSGLLKLDAFTYCTIIKVFADAKMWKWALKVKDDMKSVGVTPNTHTWSSLISACANAG 423
Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED- 471
LVEQA HLFEEML +GCEPNSQC NILL ACVEACQ+DRAFRLF+SW S +L D
Sbjct: 424 LVEQANHLFEEMLASGCEPNSQCFNILLHACVEACQYDRAFRLFQSWKGSSVNESLYADD 483
Query: 472 --YDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDY 529
G T + +++ S+ N + NS Y KRF FKPTT TYNIL+KAC TDY
Sbjct: 484 IVSKGRTSSPNILKNNGPGSLVNRNS---NSPYIQASKRFCFKPTTATYNILLKACGTDY 540
Query: 530 YRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
YR K LM+EM+++GLSPN I+W+ LID CGGSG+VEGA++
Sbjct: 541 YRGKELMDEMKSLGLSPNQITWSTLIDMCGGSGDVEGAVR 580
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449521499|ref|XP_004167767.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At5g02830, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 607 bits (1564), Expect = e-171, Method: Compositional matrix adjust.
Identities = 327/579 (56%), Positives = 414/579 (71%), Gaps = 17/579 (2%)
Query: 1 MRV--VFGSSSSSSSAIVATQTRLYNHRN-KPNKHPVTKLFPLASSSSLSSIPTVHSSQT 57
MRV + GSSS+S + R Y H + K K ++ L P + SS + S
Sbjct: 1 MRVFLILGSSSASIAG-----PRRYRHSHCKAPKSSLSNLSPTGTHLPFSSHTSTRHSPP 55
Query: 58 ALLSTVRRDLSSRN-------DYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASM 110
ALLS+V D++ + +YA +ASKLA+ G+LE+FAM+VESVVV+ S+F +M
Sbjct: 56 ALLSSVELDIAGASSGGRIPIQHYAGVASKLAEGGKLEDFAMVVESVVVAGVEPSQFGAM 115
Query: 111 LSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGE 170
L++E+VA GI + +REG++ VV VL+K+ ELG++ LEL D + L+ +C+R+ SGE
Sbjct: 116 LAVELVAKGISRCLREGKVWSVVQVLRKVEELGISVLELCDEPAVESLRRDCRRMAKSGE 175
Query: 171 VEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230
+E V LMEVL F V+E+ + +++LCV+ + +AIRYA I+P ADILFC + E
Sbjct: 176 LEELVELMEVLSGFGFSVREMMKPSEVIKLCVDYRNPKMAIRYASILPHADILFCTTINE 235
Query: 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN 290
FGKKRDL SA AY SK +++ NMYI RTIIDVCG+CGDY KSR IY+DL +QNVT N
Sbjct: 236 FGKKRDLKSAYIAYTESKANMNGSNMYIYRTIIDVCGLCGDYKKSRNIYQDLVNQNVTPN 295
Query: 291 IYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
I+VFNSLMNVNAHDL +T ++YKNMQ LGV ADMASYNILLKACCLAG LAQ+IY EV
Sbjct: 296 IFVFNSLMNVNAHDLNYTFQLYKNMQNLGVPADMASYNILLKACCLAGRVDLAQDIYREV 355
Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
KHLE GVLKLDVFTYSTIVKVFADAK W+MAL+VKEDM SAGV+PN +TWSSLI++CAN
Sbjct: 356 KHLETTGVLKLDVFTYSTIVKVFADAKLWKMALRVKEDMQSAGVSPNMVTWSSLISSCAN 415
Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE 470
+GLVE A+ LFEEM+ AGCEPN+QCCN LL ACVE QFDRAFRLFRSW + ++ G
Sbjct: 416 SGLVELAIQLFEEMVSAGCEPNTQCCNTLLHACVEGRQFDRAFRLFRSW--KEKELWDGI 473
Query: 471 DYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYY 530
+ +TD + + + T PN + H SF +FKPT TTYNILMKAC TDYY
Sbjct: 474 ERKSSTDNNLDADSTSQLCTTKMPNAPSHVHQISFVGNLAFKPTITTYNILMKACGTDYY 533
Query: 531 RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
KALM EM++VGL+PNHISW+IL+D CG S +VE A+Q
Sbjct: 534 HAKALMEEMKSVGLTPNHISWSILVDICGRSHDVESAVQ 572
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449448705|ref|XP_004142106.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 606 bits (1562), Expect = e-170, Method: Compositional matrix adjust.
Identities = 329/581 (56%), Positives = 417/581 (71%), Gaps = 21/581 (3%)
Query: 1 MRV--VFGSSSSSSSAIVATQTRLYNHRN-KPNKHPVTKLFPLASSSSLSSIPTVHSSQT 57
MRV + GSSS+S + R Y H + K K ++ L P + SS + S
Sbjct: 1 MRVFLILGSSSASIAG-----PRRYRHSHCKAPKSSLSNLSPTGTHLPFSSHTSTRHSPP 55
Query: 58 ALLSTVRRDLSSRN-------DYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASM 110
ALLS+V D++ + +YA +ASKLA+ G+LE+FAM+VESVVV+ S+F +M
Sbjct: 56 ALLSSVELDIAGASSGGRIPIQHYAGVASKLAEGGKLEDFAMVVESVVVAGVEPSQFGAM 115
Query: 111 LSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGE 170
L++E+VA GI + +REG++ VV VL+K+ ELG++ LEL D + L+ +C+R+ SGE
Sbjct: 116 LAVELVAKGISRCLREGKVWSVVQVLRKVEELGISVLELCDEPAVESLRRDCRRMAKSGE 175
Query: 171 VEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230
+E V LMEVL F V+E+ + +++LCV+ + +AIRYA I+P ADILFC + E
Sbjct: 176 LEELVELMEVLSGFGFSVREMMKPSEVIKLCVDYRNPKMAIRYASILPHADILFCTTINE 235
Query: 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN 290
FGKKRDL SA AY SK +++ NMYI RTIIDVCG+CGDY KSR IY+DL +QNV N
Sbjct: 236 FGKKRDLKSAYIAYTESKANMNGSNMYIYRTIIDVCGLCGDYKKSRNIYQDLVNQNVIPN 295
Query: 291 IYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
I+VFNSLMNVNAHDL +T ++YKNMQ LGV ADMASYNILLKACCLAG LAQ+IY EV
Sbjct: 296 IFVFNSLMNVNAHDLNYTFQLYKNMQNLGVPADMASYNILLKACCLAGRVDLAQDIYREV 355
Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
KHLE GVLKLDVFTYSTIVKVFADAK W+MAL+VKEDM SAGV+PN +TWSSLI++CAN
Sbjct: 356 KHLETTGVLKLDVFTYSTIVKVFADAKLWKMALRVKEDMQSAGVSPNMVTWSSLISSCAN 415
Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE 470
+GLVE A+ LFEEM+ AGCEPN+QCCN LL ACVE QFDRAFRLFRSW + ++ G
Sbjct: 416 SGLVELAIQLFEEMVSAGCEPNTQCCNTLLHACVEGRQFDRAFRLFRSW--KEKELWDGI 473
Query: 471 DYDGNTDRISNMEHKDKQSITNT--PNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD 528
+ +TD +N++ + NT PN + H SF F+FKPT TTYNILMKAC TD
Sbjct: 474 ERKSSTD--NNLDADSTSQLCNTKMPNAPSHVHQISFVGNFAFKPTITTYNILMKACGTD 531
Query: 529 YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
YY KALM EM++VGL+PNHISW+IL+D CG S +VE A+Q
Sbjct: 532 YYHAKALMEEMKSVGLTPNHISWSILVDICGRSHDVESAVQ 572
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|7413558|emb|CAB86037.1| putative protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 584 bits (1505), Expect = e-164, Method: Compositional matrix adjust.
Identities = 305/580 (52%), Positives = 395/580 (68%), Gaps = 32/580 (5%)
Query: 3 VVFGSSSSSSSAIVATQTRLY------NHRNKPNKHPVTKLFP---LASSSSLSSIPTVH 53
+VFGSSS+ ++ R Y N + K N TKL P S S +S+ H
Sbjct: 6 IVFGSSSAITNP-HHHHRRCYATAPESNRKTKSNSS-FTKLLPSLPQQHSPSPASVSATH 63
Query: 54 SSQTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEG-NVSKFASMLS 112
S + + VR +YYAD ASKLA+DGR+E+ A+I E++ G NV++FASM+
Sbjct: 64 SLSSHFSNVVRWIPDGSLEYYADFASKLAEDGRIEDVALIAETLAAESGANVARFASMVD 123
Query: 113 LEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVE 172
++++ GI ++R+G+I+ VV LK++ ++G+APL+L D S KL++ + + + +S +VE
Sbjct: 124 YDLLSKGISSNLRQGKIESVVYTLKRIEKVGIAPLDLVDDSSVKLMRKQFRAMANSVQVE 183
Query: 173 MFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFG 232
+ LME+L +KEL + F +V+ CV + LAIR + FG
Sbjct: 184 KAIDLMEILAGLGFKIKELVDPFDVVKSCVEISNPQLAIR--------------IIHGFG 229
Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
KK D+VS + AY+A K+ L +PNMYICRT+IDVCG+CGDY+KSR IYEDL +N+ NIY
Sbjct: 230 KKGDMVSVMTAYEACKQILDTPNMYICRTMIDVCGLCGDYVKSRYIYEDLLKENIKPNIY 289
Query: 293 VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
V NSLMNVN+HDL +TL+VYKNMQ L V ADM SYNILLK CCLAG LAQ+IY E K
Sbjct: 290 VINSLMNVNSHDLGYTLKVYKNMQILDVTADMTSYNILLKTCCLAGRVDLAQDIYKEAKR 349
Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
+E+ G+LKLD FTY TI+KVFADAK W+ ALKVK+DM S GVTPNT TWSSLI+ACANAG
Sbjct: 350 MESSGLLKLDAFTYCTIIKVFADAKMWKWALKVKDDMKSVGVTPNTHTWSSLISACANAG 409
Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED- 471
LVEQA HLFEEML +GCEPNSQC NILL ACVEACQ+DRAFRLF+SW S +L D
Sbjct: 410 LVEQANHLFEEMLASGCEPNSQCFNILLHACVEACQYDRAFRLFQSWKGSSVNESLYADD 469
Query: 472 --YDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDY 529
G T + +++ S+ N + NS Y KRF FKPTT TYNIL+KAC TDY
Sbjct: 470 IVSKGRTSSPNILKNNGPGSLVNRNS---NSPYIQASKRFCFKPTTATYNILLKACGTDY 526
Query: 530 YRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
YR K LM+EM+++GLSPN I+W+ LID CGGSG+VEGA++
Sbjct: 527 YRGKELMDEMKSLGLSPNQITWSTLIDMCGGSGDVEGAVR 566
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255568444|ref|XP_002525196.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223535493|gb|EEF37162.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 566 bits (1458), Expect = e-158, Method: Compositional matrix adjust.
Identities = 271/462 (58%), Positives = 340/462 (73%)
Query: 108 ASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLD 167
+S L + +A GI K++RE +D VV L ++LG+ P +LFD + LLK EC R+++
Sbjct: 41 SSGLHMIALAKGISKNLRERNVDSVVDALNTADQLGLPPSQLFDAASMDLLKTECLRIVN 100
Query: 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNF 227
G +E + LME L + +KEL E R+++LCV++ + +LA+RYA + P IL C+
Sbjct: 101 FGRLEDIILLMETLAGYSFSIKELVEPSRVIKLCVHQRNPHLAVRYARLFPHEGILMCSI 160
Query: 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287
V++FGKK DL SAL AY+A +H + P+MY+ R +IDVCG+CGDYM+SR I+ED+ SQ V
Sbjct: 161 VKQFGKKGDLDSALAAYEAYMQHSTVPDMYLYRALIDVCGLCGDYMQSRYIFEDIVSQKV 220
Query: 288 TLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
NI+VFNSLMNVNAHDL +TL VYK MQ LGV ADM SYNILLK+C LAG LAQ+IY
Sbjct: 221 IPNIFVFNSLMNVNAHDLGYTLHVYKKMQNLGVTADMTSYNILLKSCSLAGKVDLAQDIY 280
Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
E K LE G+LKLD FTY TI+K+FADAK WQ+ALK+KEDMLS+GVTPNT TWSSLI+A
Sbjct: 281 REAKQLELAGLLKLDDFTYCTIIKIFADAKLWQLALKIKEDMLSSGVTPNTFTWSSLISA 340
Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVA 467
ANAGLV+QA+ LFEEML AGC PNS CCNILL ACVEACQ+DRAFRLF +W S+ Q
Sbjct: 341 SANAGLVDQAIKLFEEMLLAGCVPNSHCCNILLHACVEACQYDRAFRLFNAWKGSEIQNT 400
Query: 468 LGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT 527
DY+ D IS+ H + I PN NS + SF K+F F P++ TYN LMKAC +
Sbjct: 401 FTTDYNCPVDDISSAMHACEDYIITVPNLASNSLHLSFLKKFPFTPSSATYNTLMKACGS 460
Query: 528 DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569
DY R KALM+EM+ VGLSPNHISW+ILID CG SGN+EGA+Q
Sbjct: 461 DYNRAKALMDEMQAVGLSPNHISWSILIDICGSSGNMEGAIQ 502
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356572391|ref|XP_003554352.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 540 bits (1390), Expect = e-150, Method: Compositional matrix adjust.
Identities = 293/569 (51%), Positives = 377/569 (66%), Gaps = 41/569 (7%)
Query: 3 VVFGSSSSSSSAIVATQTRLYNHRNKPNKHP-VTKLFPLASSSSLSSIPTVHSSQTALLS 61
V+ GSS + + +T + H KP P + KL P +S+ ++S AL
Sbjct: 5 VILGSSVVTPFSSSSTPHHQHRHPIKPPHKPSLPKLAPFSSNWNIS---------CAL-- 53
Query: 62 TVRRDLSSRNDYYADMASKLAKDGRL-EEFAMIVESVVVSEGNVSKFASMLSLEMVASGI 120
A +A D +L +EF ++ E + S ++ E++A +
Sbjct: 54 ------------QAPLALSHCADSKLVQEFEVVFEDFIDS--------GVVDAELLAKVV 93
Query: 121 VKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEV 180
+ IR ++ V+ L K+ ++ +GS ++ EC RL+ VE V LMEV
Sbjct: 94 LLGIRGKKVRSVIHALNKVQGRRISLSTHLNGS--DIIAKECCRLVTCSHVEEAVELMEV 151
Query: 181 LEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSA 240
L F++ ++EL + I++ CV + LA+RYAC++P A ILFCN + EFGK+RDLVSA
Sbjct: 152 LARFQISIRELVQPSDIIKRCVLSRNPILAVRYACLLPHAHILFCNIISEFGKRRDLVSA 211
Query: 241 LRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV 300
L+AY+ASKKHL++PNMYI R ID CG+C DYMKSR IYEDL +Q +T NIYVFNSLMNV
Sbjct: 212 LKAYEASKKHLNTPNMYIYRATIDTCGLCRDYMKSRYIYEDLLNQKITPNIYVFNSLMNV 271
Query: 301 NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLK 360
N+HDL +TL +Y+NMQ LG+ DM SYNILLKACC+AG LAQ+IY E+KHLE+ G LK
Sbjct: 272 NSHDLSYTLNLYQNMQNLGLKPDMTSYNILLKACCVAGRVDLAQDIYRELKHLESVGQLK 331
Query: 361 LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHL 420
LDVFTYSTI+KVFAD K WQMALK+K+DMLSAGV+ N + WSSLINACA+AGLVEQA+ L
Sbjct: 332 LDVFTYSTIIKVFADVKLWQMALKIKQDMLSAGVSLNIVAWSSLINACAHAGLVEQAIQL 391
Query: 421 FEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRIS 480
FEEML AGCEPN+QC NI+L ACVEA Q+DRAFR F SW K + GE Y+ S
Sbjct: 392 FEEMLLAGCEPNTQCFNIILNACVEAYQYDRAFRFFHSWKGKKMLGSSGEGYN------S 445
Query: 481 NMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMR 540
N+ +T+ PN + NSH +F +RF F PTTTTYNIL+KAC TDYY KAL+ EM
Sbjct: 446 NIGQGHMHDVTSIPNGISNSHILNFAERFPFTPTTTTYNILLKACGTDYYHAKALIKEME 505
Query: 541 TVGLSPNHISWTILIDACGGSGNVEGALQ 569
TVGLSPN ISW+ILID CG S NVEGA++
Sbjct: 506 TVGLSPNQISWSILIDICGASSNVEGAIE 534
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357510555|ref|XP_003625566.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355500581|gb|AES81784.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust.
Identities = 274/504 (54%), Positives = 357/504 (70%), Gaps = 21/504 (4%)
Query: 66 DLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIR 125
+LS RN+ + + + L L+EF ++ + S+ +V E++A+ ++ I+
Sbjct: 40 NLSPRNNSTSLLQTPLI----LKEFETVLHGELDSDVDV---------ELLANAVLIGIQ 86
Query: 126 EGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185
+ + V+ L K+ G++ + L + NEC ++ G +E V LMEVL F+
Sbjct: 87 DRNVRTVIDSLNKVE--GLSEISLSTHLDASAIANECCHMVTCGHIEEAVELMEVLSRFQ 144
Query: 186 LPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYD 245
L + +L + I++ C+ LA+RYA ++P+A +LFC+ + EF K+RDLVSAL+AYD
Sbjct: 145 LSIAKLVQPSDIIKRCILSRKPTLAVRYASLLPQAPVLFCSIISEFSKRRDLVSALKAYD 204
Query: 246 ASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDL 305
A KK+L PNMYI R IID CG+CGD+MKSR IYEDL +Q +T NIYVFNSLMNVNAHDL
Sbjct: 205 ALKKNLKGPNMYIYRAIIDACGLCGDFMKSRYIYEDLLNQKITPNIYVFNSLMNVNAHDL 264
Query: 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT 365
++L +Y+NMQKLG+ DMASYNILLKACC+AG +AQ++Y ++KHLE+ G LKLDVFT
Sbjct: 265 SYSLNLYQNMQKLGLKPDMASYNILLKACCVAGRVDVAQDMYRDLKHLESVGQLKLDVFT 324
Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
YSTI+KVFADAK WQMALK+K DMLSAGV+ NTI WSSLINACA+AGLVEQA+ LFEEML
Sbjct: 325 YSTIIKVFADAKLWQMALKIKRDMLSAGVSLNTIAWSSLINACAHAGLVEQAIQLFEEML 384
Query: 426 QAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHK 485
AGCEPN+QC NI+L ACVE CQ+DRAFRLF SW SK V L E + SN E
Sbjct: 385 LAGCEPNTQCFNIILHACVEGCQYDRAFRLFHSWKGSKMLVPLDESCN------SNSEQG 438
Query: 486 DKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLS 545
++T P + +SH SF +RF F PTTTTYNIL+KAC T+YY KAL+NEMRTVGLS
Sbjct: 439 GMHNVTTVPTGISSSHILSFTERFPFTPTTTTYNILLKACGTNYYHAKALINEMRTVGLS 498
Query: 546 PNHISWTILIDACGGSGNVEGALQ 569
PN ISW+ILI+ CG S NV+G ++
Sbjct: 499 PNQISWSILINICGASENVDGVIE 522
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 572 | ||||||
| TAIR|locus:2151236 | 852 | AT5G02830 [Arabidopsis thalian | 0.865 | 0.580 | 0.573 | 1.3e-153 | |
| TAIR|locus:2139732 | 566 | AT4G11690 [Arabidopsis thalian | 0.377 | 0.381 | 0.255 | 9.1e-15 | |
| TAIR|locus:2077637 | 871 | AT3G06920 "AT3G06920" [Arabido | 0.402 | 0.264 | 0.252 | 8.3e-18 | |
| TAIR|locus:2027166 | 862 | PTAC2 "plastid transcriptional | 0.400 | 0.265 | 0.25 | 4.2e-17 | |
| TAIR|locus:2016427 | 904 | AT1G19290 [Arabidopsis thalian | 0.402 | 0.254 | 0.252 | 1.8e-16 | |
| TAIR|locus:2019085 | 763 | AT1G74580 "AT1G74580" [Arabido | 0.506 | 0.380 | 0.230 | 4.6e-16 | |
| TAIR|locus:2044430 | 822 | AT2G18940 [Arabidopsis thalian | 0.5 | 0.347 | 0.250 | 9.6e-16 | |
| TAIR|locus:2116915 | 1089 | MRL1 "MATURATION OF RBCL 1" [A | 0.704 | 0.370 | 0.230 | 2.8e-15 | |
| TAIR|locus:2163041 | 527 | AT5G41170 [Arabidopsis thalian | 0.400 | 0.434 | 0.217 | 3.4e-15 | |
| TAIR|locus:2077061 | 619 | AT3G22470 "AT3G22470" [Arabido | 0.489 | 0.452 | 0.240 | 3.9e-15 |
| TAIR|locus:2151236 AT5G02830 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1498 (532.4 bits), Expect = 1.3e-153, P = 1.3e-153
Identities = 288/502 (57%), Positives = 371/502 (73%)
Query: 72 DYYADMASKLAKDGRLEEFAMIXXXXXXXXG-NVSKFASMLSLEMVASGIVKSIREGRID 130
+YYAD ASKLA+DGR+E+ A+I G NV++FASM+ ++++ GI ++R+G+I+
Sbjct: 82 EYYADFASKLAEDGRIEDVALIAETLAAESGANVARFASMVDYDLLSKGISSNLRQGKIE 141
Query: 131 CVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKE 190
VV LK++ ++G+APL+L D S KL++ + + + +S +VE + LME+L +KE
Sbjct: 142 SVVYTLKRIEKVGIAPLDLVDDSSVKLMRKQFRAMANSVQVEKAIDLMEILAGLGFKIKE 201
Query: 191 LDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKH 250
L + F +V+ CV + LAIRYAC++P ++L C + FGKK D+VS + AY+A K+
Sbjct: 202 LVDPFDVVKSCVEISNPQLAIRYACLLPHTELLLCRIIHGFGKKGDMVSVMTAYEACKQI 261
Query: 251 LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLE 310
L +PNMYICRT+IDVCG+CGDY+KSR IYEDL +N+ NIYV NSLMNVN+HDL +TL+
Sbjct: 262 LDTPNMYICRTMIDVCGLCGDYVKSRYIYEDLLKENIKPNIYVINSLMNVNSHDLGYTLK 321
Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
VYKNMQ L V ADM SYNILLK CCLAG LAQ+IY E K +E+ G+LKLD FTY TI+
Sbjct: 322 VYKNMQILDVTADMTSYNILLKTCCLAGRVDLAQDIYKEAKRMESSGLLKLDAFTYCTII 381
Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
KVFADAK W+ ALKVK+DM S GVTPNT TWSSLI+ACANAGLVEQA HLFEEML +GCE
Sbjct: 382 KVFADAKMWKWALKVKDDMKSVGVTPNTHTWSSLISACANAGLVEQANHLFEEMLASGCE 441
Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED---YDGNTDRISNMEHKDK 487
PNSQC NILL ACVEACQ+DRAFRLF+SW S +L D G T + +++
Sbjct: 442 PNSQCFNILLHACVEACQYDRAFRLFQSWKGSSVNESLYADDIVSKGRTSSPNILKNNGP 501
Query: 488 QSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPN 547
S+ N + NS Y KRF FKPTT TYNIL+KAC TDYYR K LM+EM+++GLSPN
Sbjct: 502 GSLVNRNS---NSPYIQASKRFCFKPTTATYNILLKACGTDYYRGKELMDEMKSLGLSPN 558
Query: 548 HISWTILIDACGGSGNVEGALQ 569
I+W+ LID CGGSG+VEGA++
Sbjct: 559 QITWSTLIDMCGGSGDVEGAVR 580
|
|
| TAIR|locus:2139732 AT4G11690 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 219 (82.2 bits), Expect = 9.1e-15, P = 9.1e-15
Identities = 59/231 (25%), Positives = 118/231 (51%)
Query: 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA--IYEDLRSQNVTL 289
G+ +D A + +D ++ S N+ T+I G+C + + A + + ++S +
Sbjct: 282 GRTKD---AFQVFDEMRERGVSCNIVTYNTLIG--GLCREMKLNEANKVVDQMKSDGINP 336
Query: 290 NIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
N+ +N+L++ L L + ++++ G+ + +YNIL+ C G+T A ++
Sbjct: 337 NLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKM- 395
Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
VK +E +G+ K TY+ ++ FA + + A++++ M G+ P+ T+S LI+
Sbjct: 396 --VKEMEERGI-KPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHG 452
Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCN-ILLQACVEACQFDRAFRLFR 457
G + +A LF+ M++ CEPN N ++L C E + RA +L +
Sbjct: 453 FCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSY-RALKLLK 502
|
|
| TAIR|locus:2077637 AT3G06920 "AT3G06920" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 214 (80.4 bits), Expect = 8.3e-18, Sum P(2) = 8.3e-18
Identities = 61/242 (25%), Positives = 118/242 (48%)
Query: 222 ILFCNFVREF---GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI 278
I++ + ++ F G+K D + Y SP++ + T +D G+ K RA+
Sbjct: 483 IVYTSLIKNFFNHGRKED---GHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAM 539
Query: 279 YEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL 336
+E+++++ + ++ L++ + A T E++ +M++ G + D +YNI++ C
Sbjct: 540 FEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCK 599
Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
G A ++ E+K KG + V TY +++ A A + E+ S +
Sbjct: 600 CGKVNKAYQLLEEMK---TKG-FEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIEL 655
Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
N + +SSLI+ G +++A + EE++Q G PN N LL A V+A + + A F
Sbjct: 656 NVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCF 715
Query: 457 RS 458
+S
Sbjct: 716 QS 717
|
|
| TAIR|locus:2027166 PTAC2 "plastid transcriptionally active 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 231 (86.4 bits), Expect = 4.2e-17, Sum P(2) = 4.2e-17
Identities = 59/236 (25%), Positives = 118/236 (50%)
Query: 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI 291
G++ L L +D S +++ +I+ G G Y S + + ++++ ++ +I
Sbjct: 152 GREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNEKISPSI 211
Query: 292 YVFNSLMNVNAH---DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348
+N+++N A D + L ++ M+ G+ D+ +YN LL AC + G L E
Sbjct: 212 LTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRG---LGDEAEM 268
Query: 349 EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408
+ + G++ D+ TYS +V+ F + + + +M S G P+ +++ L+ A
Sbjct: 269 VFRTMNDGGIVP-DLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAY 327
Query: 409 ANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKT 464
A +G +++AM +F +M AGC PN+ ++LL ++ ++D +LF S T
Sbjct: 328 AKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNT 383
|
|
| TAIR|locus:2016427 AT1G19290 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 193 (73.0 bits), Expect = 1.8e-16, Sum P(2) = 1.8e-16
Identities = 60/238 (25%), Positives = 108/238 (45%)
Query: 222 ILFCN-FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280
+L CN + +K + AL YD SP+++ C +++ G+ K+ +
Sbjct: 190 LLSCNSLLSNLVRKGENFVALHVYDQMISFEVSPDVFTCSIVVNAYCRSGNVDKAMVFAK 249
Query: 281 DLRSQ-NVTLNIYVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
+ S + LN+ +NSL+N A D++ V + M + GV ++ +Y L+K C
Sbjct: 250 ETESSLGLELNVVTYNSLINGYAMIGDVEGMTRVLRLMSERGVSRNVVTYTSLIKGYCKK 309
Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
G A+ ++ +K E K L D Y ++ + + A++V ++M+ GV N
Sbjct: 310 GLMEEAEHVFELLK--EKK--LVADQHMYGVLMDGYCRTGQIRDAVRVHDNMIEIGVRTN 365
Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455
T +SLIN +G + +A +F M +P+ N L+ A D A +L
Sbjct: 366 TTICNSLINGYCKSGQLVEAEQIFSRMNDWSLKPDHHTYNTLVDGYCRAGYVDEALKL 423
|
|
| TAIR|locus:2019085 AT1G74580 "AT1G74580" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 233 (87.1 bits), Expect = 4.6e-16, P = 4.6e-16
Identities = 74/321 (23%), Positives = 152/321 (47%)
Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTL 309
P+ + R++ID G+C G+ ++ A++ + + + N+ ++N+L+ N +
Sbjct: 354 PDQFTYRSLID--GLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAA 411
Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
++ M + G++ ++ ++NIL+ C G + G VK + +KG D+FT++ +
Sbjct: 412 QLANEMSEKGLIPEVQTFNILVNGLCKMG---CVSDADGLVKVMISKGYFP-DIFTFNIL 467
Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
+ ++ + AL++ + ML GV P+ T++SL+N E M ++ M++ GC
Sbjct: 468 IHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGC 527
Query: 430 EPNSQCCNILLQACVEACQFDRAFRLF---RSWTLSKTQVALGEDYDGNTDRISNMEHKD 486
PN NILL++ + D A L ++ +++ V G DG N +
Sbjct: 528 APNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFC---KNGDLDG 584
Query: 487 KQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRV---KALMNEMRTVG 543
++ + ++ + +T TYNI++ A T+ V + L EM
Sbjct: 585 AYTL-----------FRKMEEAYKVSSSTPTYNIIIHAF-TEKLNVTMAEKLFQEMVDRC 632
Query: 544 LSPNHISWTILIDACGGSGNV 564
L P+ ++ +++D +GNV
Sbjct: 633 LGPDGYTYRLMVDGFCKTGNV 653
|
|
| TAIR|locus:2044430 AT2G18940 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 206 (77.6 bits), Expect = 9.6e-16, Sum P(2) = 9.6e-16
Identities = 77/307 (25%), Positives = 141/307 (45%)
Query: 150 FDGSGFKLLKNECQRLL----DSGEVEMFVGLME--VLEEFRLPVKELDEE-FRI-VQLC 201
FD +LL+ + L+ DSG E V L E VL +K LD + I V++
Sbjct: 127 FDSVKSELLRTDLVSLVKGLDDSGHWERAVFLFEWLVLSSNSGALK-LDHQVIEIFVRIL 185
Query: 202 VNKPDVNLAIRYACIVPRADIL-----FCNFVREFGKKRDLVSALRAYDASKKHLSSPNM 256
+ ++A + +P + L + + + + A+ ++ K+ SP +
Sbjct: 186 GRESQYSVAAKLLDKIPLQEYLLDVRAYTTILHAYSRTGKYEKAIDLFERMKEMGPSPTL 245
Query: 257 YICRTIIDVCGICG-DYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD--LKFTLEVYK 313
I+DV G G + K + +++RS+ + + + +++++ A + L+ E +
Sbjct: 246 VTYNVILDVFGKMGRSWRKILGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFA 305
Query: 314 NMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVF 373
++ G +YN LL+ AG + E +K +E D TY+ +V +
Sbjct: 306 ELKSCGYEPGTVTYNALLQVFGKAG---VYTEALSVLKEMEENSC-PADSVTYNELVAAY 361
Query: 374 ADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433
A + + A V E M GV PN IT++++I+A AG ++A+ LF M +AGC PN+
Sbjct: 362 VRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNT 421
Query: 434 QCCNILL 440
N +L
Sbjct: 422 CTYNAVL 428
|
|
| TAIR|locus:2116915 MRL1 "MATURATION OF RBCL 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 228 (85.3 bits), Expect = 2.8e-15, P = 2.8e-15
Identities = 104/451 (23%), Positives = 186/451 (41%)
Query: 124 IREGRI-DCVVGVLKKLNELGVAPLE-LFDGSGFKLLKNECQRLLDSGEVEMFVGLM--E 179
+R+GRI DC+ +L+ L++ + ++ ++ S FK K QR + E F L+
Sbjct: 411 LRDGRIKDCI-SLLEDLDQRDLLDMDKIYHASFFKACKK--QRAVK--EAFRFTKLILNP 465
Query: 180 VLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR----ADI-LFCNFVREFGKK 234
+ F + ++ +C + D+ A +V AD L+ + K
Sbjct: 466 TMSTFNM----------LMSVCASSQDIEGARGVLRLVQESGMTADCKLYTTLISSCAKS 515
Query: 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVF 294
+ + + N++ +ID C G K+ Y LRS+NV + VF
Sbjct: 516 GKVDAMFEVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAYGILRSKNVKPDRVVF 575
Query: 295 NSLMNV----NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
N+L++ A D F + + + D S L+KACC AG A+E+Y +
Sbjct: 576 NALISACGQSGAVDRAFDVLAEMKAETHPIDPDHISIGALMKACCNAGQVERAKEVYQMI 635
Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
+G ++ Y+ V + + W A + +DM VTP+ + +S+LI+ +
Sbjct: 636 HKYGIRGTPEV----YTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEVFFSALIDVAGH 691
Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE 470
A ++++A + ++ G + + L+ AC A + +A L+ K +
Sbjct: 692 AKMLDEAFGILQDAKSQGIRLGTISYSSLMGACCNAKDWKKALELYEKIKSIKLRPT--- 748
Query: 471 DYDGNTDRISNMEHKDKQSITNTPNFVPNS-HYSSFDKRFSFKPTTTTYNILMKAC-CTD 528
IS M N +P + Y K KP T TY++LM A D
Sbjct: 749 --------ISTMNALITALCEG--NQLPKAMEYLDEIKTLGLKPNTITYSMLMLASERKD 798
Query: 529 YYRVK-ALMNEMRTVGLSPNHISWTILIDAC 558
+ V L+++ + G+SPN I + C
Sbjct: 799 DFEVSFKLLSQAKGDGVSPNLIMCRCITSLC 829
|
|
| TAIR|locus:2163041 AT5G41170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 198 (74.8 bits), Expect = 3.4e-15, Sum P(2) = 3.4e-15
Identities = 52/239 (21%), Positives = 113/239 (47%)
Query: 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIY 279
+++ + K + AL +D + + P++ + ++++ G+C G + + ++
Sbjct: 178 VMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVN--GLCNSGRWRDADSLL 235
Query: 280 EDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLA 337
+ + + ++ FN+L++ + KF E+Y M ++ + ++ +Y L+ C+
Sbjct: 236 RGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCME 295
Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
G A++++ +E KG DV Y++++ F K A+K+ +M G+T N
Sbjct: 296 GCVDEARQMF---YLMETKGCFP-DVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGN 351
Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
TIT+++LI G A +F M+ G PN + N+LL + +A +F
Sbjct: 352 TITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIF 410
|
|
| TAIR|locus:2077061 AT3G22470 "AT3G22470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 223 (83.6 bits), Expect = 3.9e-15, P = 3.9e-15
Identities = 73/303 (24%), Positives = 138/303 (45%)
Query: 267 GICGD--YMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMA 322
G+C D + + ++ +N+ ++ F++L++V + K E+Y M G+
Sbjct: 289 GLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAP 348
Query: 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382
D +YN L+ C A +++ + +KG + D+ TYS ++ + AK
Sbjct: 349 DTITYNSLIDGFCKENCLHEANQMFDL---MVSKGC-EPDIVTYSILINSYCKAKRVDDG 404
Query: 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442
+++ ++ S G+ PNTIT+++L+ +G + A LF+EM+ G P+ ILL
Sbjct: 405 MRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDG 464
Query: 443 CVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHY 502
+ + ++A +F S+ + +G Y+ + N D S +
Sbjct: 465 LCDNGELNKALEIFEKMQKSRMTLGIGI-YNIIIHGMCNASKVDDAW----------SLF 513
Query: 503 SSFDKRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDA-CG 559
S + KP TYN+++ C +A L +M+ G +P+ ++ ILI A G
Sbjct: 514 CSLSDK-GVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLG 572
Query: 560 GSG 562
GSG
Sbjct: 573 GSG 575
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8GYL7 | PP361_ARATH | No assigned EC number | 0.5362 | 0.9825 | 0.6596 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 572 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-22 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 9e-19 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-12 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 8e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-09 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 7e-07 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-06 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 6e-06 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 7e-06 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 7e-04 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 0.001 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (252), Expect = 3e-22
Identities = 76/323 (23%), Positives = 134/323 (41%), Gaps = 61/323 (18%)
Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN----VNAHDLKFTL 309
N++ +ID C G K+ Y +RS+NV + VFN+L++ A D F
Sbjct: 505 ANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAF-- 562
Query: 310 EVYKNM--QKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367
+V M + + D + L+KAC AG A+E+Y + KG ++ Y+
Sbjct: 563 DVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEV----YT 618
Query: 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427
V + W AL + +DM GV P+ + +S+L++ +AG +++A + ++ +
Sbjct: 619 IAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ 678
Query: 428 GCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDK 487
G + + + L+ AC A + +A L+ K
Sbjct: 679 GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK------------------------ 714
Query: 488 QSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLS 545
+PT +T N L+ A C KAL ++EM+ +GL
Sbjct: 715 -----------------------LRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLC 751
Query: 546 PNHISWTILIDACGGSGNVEGAL 568
PN I+++IL+ A + + L
Sbjct: 752 PNTITYSILLVASERKDDADVGL 774
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 90.3 bits (224), Expect = 9e-19
Identities = 53/197 (26%), Positives = 99/197 (50%), Gaps = 9/197 (4%)
Query: 259 CRTI-IDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH--DLKFTLEVYKNM 315
TI ++ C GD+ + +IY+D++ + V + F++L++V H DL E+ ++
Sbjct: 616 VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDA 675
Query: 316 QKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD 375
+K G+ SY+ L+ AC A N A E+Y ++K ++ L+ V T + ++ +
Sbjct: 676 RKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK----LRPTVSTMNALITALCE 731
Query: 376 AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQC 435
AL+V +M G+ PNTIT+S L+ A + + L + + G +PN
Sbjct: 732 GNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVM 791
Query: 436 CNILLQACVEACQFDRA 452
C + C+ +F++A
Sbjct: 792 CRCITGLCLR--RFEKA 806
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 82.2 bits (203), Expect = 3e-16
Identities = 50/201 (24%), Positives = 95/201 (47%), Gaps = 14/201 (6%)
Query: 262 IIDVCGICGDYMKSRAIYEDLRSQNV--TLNIYVFNSLMNVNAH----DLKFTLEVYKNM 315
++ C G +++ +Y+ + N+ T +Y + VN+ D F L +Y +M
Sbjct: 585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYT----IAVNSCSQKGDWDFALSIYDDM 640
Query: 316 QKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD 375
+K GV D ++ L+ AG+ + + ++ +G +KL +YS+++ ++
Sbjct: 641 KKKGVKPDEVFFSALVDV---AGHAGDLDKAFEILQDARKQG-IKLGTVSYSSLMGACSN 696
Query: 376 AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQC 435
AK W+ AL++ ED+ S + P T ++LI A + +A+ + EM + G PN+
Sbjct: 697 AKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTIT 756
Query: 436 CNILLQACVEACQFDRAFRLF 456
+ILL A D L
Sbjct: 757 YSILLVASERKDDADVGLDLL 777
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 62.0 bits (152), Expect = 1e-12
Identities = 17/48 (35%), Positives = 29/48 (60%)
Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443
P+ +T+++LI+ G VE+A+ LF EM + G +PN +IL+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 68.0 bits (166), Expect = 8e-12
Identities = 57/249 (22%), Positives = 97/249 (38%), Gaps = 55/249 (22%)
Query: 324 MASYNILLKACCLAGNTVLAQEIYG--EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381
++++N+L+ C + Q+I G V L + LK D Y+T++ A +
Sbjct: 437 LSTFNMLMSVCASS------QDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDA 490
Query: 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441
+V +M++AGV N T+ +LI+ CA AG V +A + M +P+ N L+
Sbjct: 491 MFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIS 550
Query: 442 ACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH 501
AC ++ DRAF D ++ M+ + P
Sbjct: 551 ACGQSGAVDRAF-----------------------DVLAEMKAE------THP------- 574
Query: 502 YSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACG 559
P T LMKAC R K + + + +TI +++C
Sbjct: 575 ---------IDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCS 625
Query: 560 GSGNVEGAL 568
G+ + AL
Sbjct: 626 QKGDWDFAL 634
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 53.6 bits (130), Expect = 1e-09
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
DV TY+T++ + + ALK+ +M G+ PN T+S LI+
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 3e-08
Identities = 48/213 (22%), Positives = 99/213 (46%), Gaps = 24/213 (11%)
Query: 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA-HDL-KFTLEVY 312
+ ++ +ID+ CGD +R +++ + + +NS++ A H + L +Y
Sbjct: 258 DTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTV----AWNSMLAGYALHGYSEEALCLY 313
Query: 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY-GEVKHLEAKGVLKLDVFTYSTIVK 371
M+ GV D +++I+++ A++ + G ++ LD+ + +V
Sbjct: 314 YEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-----GFPLDIVANTALVD 368
Query: 372 VFADAKWWQM--ALKVKEDMLSAGVTP--NTITWSSLINACANAGLVEQAMHLFEEMLQA 427
+++ KW +M A V + M P N I+W++LI N G +A+ +FE M+
Sbjct: 369 LYS--KWGRMEDARNVFDRM------PRKNLISWNALIAGYGNHGRGTKAVEMFERMIAE 420
Query: 428 GCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460
G PN +L AC + ++ + +F+S +
Sbjct: 421 GVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMS 453
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 46.6 bits (112), Expect = 4e-07
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 513 PTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDAC 558
P TYN L+ C L NEM+ G+ PN +++ILID
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 46.2 bits (111), Expect = 6e-07
Identities = 10/48 (20%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 290 NIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
++ +N+L++ ++ L+++ M+K G+ ++ +Y+IL+ C
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 6e-07
Identities = 15/35 (42%), Positives = 25/35 (71%)
Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433
+T+++LI+ AG VE+A+ LF+EM + G EP+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 45.4 bits (109), Expect = 7e-07
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
G+ P+ +T+++LI+ AG V++A+ L +EM
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 6e-06
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
+T++SLI+ AG +E+A+ LF+EM + G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 6e-06
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
T+++L+ A A AG + A+ + EEM +G +P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 7e-06
Identities = 45/192 (23%), Positives = 86/192 (44%), Gaps = 20/192 (10%)
Query: 269 CGDYMKSRAIYE-----DLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMAD 323
CGD + +R +++ D S N ++ Y N LE++ M++L V D
Sbjct: 235 CGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEG-------LELFFTMRELSVDPD 287
Query: 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383
+ + ++ AC L G+ L +E++G V K +DV +++++++ W A
Sbjct: 288 LMTITSVISACELLGDERLGREMHGYV----VKTGFAVDVSVCNSLIQMYLSLGSWGEAE 343
Query: 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443
KV M T + ++W+++I+ GL ++A+ + M Q P+ +L AC
Sbjct: 344 KVFSRM----ETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSAC 399
Query: 444 VEACQFDRAFRL 455
D +L
Sbjct: 400 ACLGDLDVGVKL 411
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 7e-04
Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 4/105 (3%)
Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
LEA L TY +V+ K + V + S+G P+ + ++ G
Sbjct: 113 LEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCG 172
Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
++ A LF+EM E N ++ V+A + AF LFR
Sbjct: 173 MLIDARRLFDEM----PERNLASWGTIIGGLVDAGNYREAFALFR 213
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.001
Identities = 18/63 (28%), Positives = 37/63 (58%)
Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421
DV +++ ++ + MA+++ M+ +GV P+ +T+ SL+ AC+ +G+V Q + F
Sbjct: 553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYF 612
Query: 422 EEM 424
M
Sbjct: 613 HSM 615
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.002
Identities = 15/96 (15%), Positives = 25/96 (26%), Gaps = 47/96 (48%)
Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490
P+ N L+ + + + A +LF + M
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLF-----------------------NEM-------- 29
Query: 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC 526
K+ KP TY+IL+ C
Sbjct: 30 ----------------KKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
TY+T++ A + AL++ ++M G+ P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 572 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.95 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.94 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.88 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.85 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.84 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.81 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.8 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.79 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.79 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.77 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.76 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.74 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.74 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.73 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.73 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.67 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.64 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.6 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.56 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.56 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.54 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.52 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.5 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.49 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.49 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.49 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.47 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.46 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.45 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.45 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.44 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.4 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.38 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.38 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.38 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.37 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.37 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.36 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.33 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.32 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.31 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.27 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.25 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.24 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.2 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.16 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.15 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.12 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.11 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.09 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.09 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.09 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.09 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.09 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.06 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.04 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.03 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.0 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.97 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.96 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.95 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.92 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.88 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 98.85 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.78 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.76 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 98.74 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.73 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.73 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.73 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.71 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.71 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.71 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.7 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.67 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.64 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.62 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.62 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.6 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.58 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.57 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.57 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.56 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.56 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.54 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.53 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.52 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.52 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.52 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.51 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.5 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.41 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.41 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.36 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.34 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.3 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.27 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.26 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.26 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.25 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.24 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.23 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.16 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.16 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.15 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.14 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.13 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.11 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.1 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.09 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.09 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.09 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.09 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.06 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.05 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.03 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.02 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.02 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.01 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 97.99 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.98 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.98 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.91 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.91 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.91 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 97.9 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.9 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.86 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 97.86 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.86 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.86 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.85 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 97.81 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.81 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.81 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.77 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.76 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.75 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.72 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.67 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.6 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.58 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.51 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.5 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.5 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.48 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.45 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.44 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.43 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.36 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.34 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.34 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.32 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.3 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.29 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 97.26 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.25 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.23 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.21 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.12 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.12 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.11 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.04 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.03 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.02 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.0 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.98 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.98 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.96 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.91 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.89 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.81 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.79 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.75 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.75 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.75 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.74 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.7 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.69 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.65 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.61 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.52 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.4 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.4 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.33 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.33 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.29 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.28 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.28 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.27 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.25 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.25 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.24 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.23 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.23 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.13 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.07 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.94 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 95.91 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.86 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.81 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 95.81 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.75 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.71 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.7 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.64 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.57 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.56 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.53 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.48 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 95.46 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.45 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.35 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.31 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.3 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 95.17 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 95.15 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.03 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.97 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 94.96 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.78 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.77 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 94.74 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 94.72 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.44 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.3 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.22 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.1 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 93.97 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.97 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.9 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.89 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.88 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 93.69 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.64 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 93.33 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 93.27 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 93.1 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.93 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 92.8 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 92.72 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 92.62 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 92.5 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 92.45 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 91.95 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 91.87 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 91.79 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 91.67 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 91.64 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 91.56 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.31 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 91.27 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.03 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 90.98 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 90.87 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 90.76 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 90.68 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 90.56 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 90.55 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 90.4 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 90.26 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 90.14 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 89.42 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 89.37 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 89.0 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 88.9 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 88.78 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 88.74 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 88.71 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 88.65 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 88.57 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 88.28 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 87.71 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 87.48 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 87.2 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 86.01 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 86.01 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 85.79 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 85.67 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 85.29 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 84.84 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 84.56 | |
| KOG0686 | 466 | consensus COP9 signalosome, subunit CSN1 [Posttran | 84.01 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 84.0 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 83.57 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 83.54 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 83.37 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 83.36 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 82.71 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 82.69 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 82.64 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 82.55 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 82.42 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 81.58 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 81.44 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 81.42 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 81.11 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 80.41 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 80.05 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-60 Score=501.91 Aligned_cols=487 Identities=19% Similarity=0.246 Sum_probs=416.5
Q ss_pred hhhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCC-hhHHHhH------------------------HHHHHHhhhhHhh
Q 008265 69 SRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGN-VSKFASM------------------------LSLEMVASGIVKS 123 (572)
Q Consensus 69 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~------------------------~~~~~~~~~~~~~ 123 (572)
++...|..++..+++.|++++|.++|++|...|+. ++..... .+..+++.++.+|
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVC 447 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 34788999999999999999999999999998864 3322111 1235678889999
Q ss_pred hhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhc
Q 008265 124 IREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVN 203 (572)
Q Consensus 124 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 203 (572)
++.|++++|.++|++|.+.|+.||.. +|+.++.+|+. .|++++|.++|++|.+.|+.| +..+|+.+|.+|++
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~----tynsLI~~y~k---~G~vd~A~~vf~eM~~~Gv~P-dvvTynaLI~gy~k 519 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCK----LYTTLISTCAK---SGKVDAMFEVFHEMVNAGVEA-NVHTFGALIDGCAR 519 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHh---CcCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHH
Confidence 99999999999999999999999887 77777776655 899999999999999999876 46899999999999
Q ss_pred CCChHHHHHhhhcC-----CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 008265 204 KPDVNLAIRYACIV-----PRADILFCNFVREFGKKRDLVSALRAYDASKK--HLSSPNMYICRTIIDVCGICGDYMKSR 276 (572)
Q Consensus 204 ~g~~~~a~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~~~~~ll~~~~~~g~~~~a~ 276 (572)
.|++++|.++|+.| .++..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|+.+|.+|++.|++++|.
T Consensus 520 ~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~ 599 (1060)
T PLN03218 520 AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999887 45669999999999999999999999999976 578999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhc--CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008265 277 AIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354 (572)
Q Consensus 277 ~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 354 (572)
++|++|.+.|+.|+..+|+.+|.+|+ |++++|+++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+
T Consensus 600 elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k-- 677 (1060)
T PLN03218 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK-- 677 (1060)
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--
Confidence 99999999999999999999999987 78999999999999999999999999999999999999999999999986
Q ss_pred HhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 008265 355 AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434 (572)
Q Consensus 355 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 434 (572)
.| +.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..
T Consensus 678 -~G-~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~ 755 (1060)
T PLN03218 678 -QG-IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTI 755 (1060)
T ss_pred -cC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 45 7999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCHhHHHHHHHHhhhcccccccccccCCchHHHHhhhhhcccc----ccCCCCc--------ccCCcc
Q 008265 435 CCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS----ITNTPNF--------VPNSHY 502 (572)
Q Consensus 435 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~--------~~~~~~ 502 (572)
||+.++.+|++.|++++|.++|++|.+.|..++... ++...+.......++... .....+. ...-.+
T Consensus 756 Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~t-ynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~l 834 (1060)
T PLN03218 756 TYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVM-CRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMV 834 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHH
Confidence 999999999999999999999999999988765321 222222211111111100 0000000 011345
Q ss_pred chhhhhcCCCCCHHHHHHHHHHHhh--cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCccccccc
Q 008265 503 SSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQC 570 (572)
Q Consensus 503 ~~~~~~~~~~p~~~~~~~ll~a~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~ 570 (572)
++.|.+.|+.||..||+.+|.++++ ..+.+..++++|...+..|+..+|++|+++|.+. .++|+.+
T Consensus 835 f~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l 902 (1060)
T PLN03218 835 YRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSL 902 (1060)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHH
Confidence 7789999999999999999976665 4578889999998889999999999999998542 2456543
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-59 Score=497.86 Aligned_cols=450 Identities=18% Similarity=0.254 Sum_probs=398.2
Q ss_pred hhhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcc
Q 008265 69 SRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLE 148 (572)
Q Consensus 69 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 148 (572)
|+..+|+.+|.+|++.|+++.|.++|+.|.+.|+.|+ ..+++.++.+|++.|++++|.++|++|.+.|+.||.
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD-------~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pdv 507 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKAD-------CKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANV 507 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCC-------HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCH
Confidence 5679999999999999999999999999999999998 556888999999999999999999999999999988
Q ss_pred hhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCC-------Cch
Q 008265 149 LFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVP-------RAD 221 (572)
Q Consensus 149 ~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~ 221 (572)
. +|+.++.+|+. .|++++|+++|++|.+.|+.|+ ..+|+.|+.+|++.|++++|.++|+.|. ++.
T Consensus 508 v----TynaLI~gy~k---~G~~eeAl~lf~~M~~~Gv~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~ 579 (1060)
T PLN03218 508 H----TFGALIDGCAR---AGQVAKAFGAYGIMRSKNVKPD-RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDH 579 (1060)
T ss_pred H----HHHHHHHHHHH---CcCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcH
Confidence 7 77777776655 8999999999999999998875 5899999999999999999999998873 456
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 008265 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (572)
Q Consensus 222 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 301 (572)
.+|+++|.+|++.|++++|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.++
T Consensus 580 vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~ 659 (1060)
T PLN03218 580 ITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVA 659 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred c--CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccH
Q 008265 302 A--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW 379 (572)
Q Consensus 302 ~--~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 379 (572)
+ |+.++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .| +.||..+|++||.+|++.|++
T Consensus 660 ~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~---~g-~~PdvvtyN~LI~gy~k~G~~ 735 (1060)
T PLN03218 660 GHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKS---IK-LRPTVSTMNALITALCEGNQL 735 (1060)
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---cC-CCCCHHHHHHHHHHHHHCCCH
Confidence 7 78999999999999999999999999999999999999999999999986 44 799999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----hC--------
Q 008265 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE----AC-------- 447 (572)
Q Consensus 380 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g-------- 447 (572)
++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++|.+|.+.|+.||..+|++++..|.+ ++
T Consensus 736 eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~ 815 (1060)
T PLN03218 736 PKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVS 815 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999976542 21
Q ss_pred -----------CHhHHHHHHHHhhhcccccccccccCCchHHHHhhhhhccccccCCCCcccCCccchhhhhcCCCCCHH
Q 008265 448 -----------QFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTT 516 (572)
Q Consensus 448 -----------~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 516 (572)
..++|..+|++|.+.|..|+.... ...+.-+ +... +......+++.|...+..|+..
T Consensus 816 f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~-~~vL~cl------~~~~-----~~~~~~~m~~~m~~~~~~~~~~ 883 (1060)
T PLN03218 816 FDSGRPQIENKWTSWALMVYRETISAGTLPTMEVL-SQVLGCL------QLPH-----DATLRNRLIENLGISADSQKQS 883 (1060)
T ss_pred hhccccccccchHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHh------cccc-----cHHHHHHHHHHhccCCCCcchh
Confidence 236799999999999987653211 1111000 0000 0000012233345556788999
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHhCCCCCCHH
Q 008265 517 TYNILMKACCTDYYRVKALMNEMRTVGLSPNHI 549 (572)
Q Consensus 517 ~~~~ll~a~~~~~~~a~~~~~~m~~~g~~p~~~ 549 (572)
+|+++|++|++..++|..++++|...|+.|+..
T Consensus 884 ~y~~Li~g~~~~~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 884 NLSTLVDGFGEYDPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred hhHHHHHhhccChHHHHHHHHHHHHcCCCCCcc
Confidence 999999999876789999999999999999975
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-58 Score=486.55 Aligned_cols=453 Identities=18% Similarity=0.236 Sum_probs=403.1
Q ss_pred hhHHHHHHHhHhhcCChhHHHHHHHHHHhhc-CChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcch
Q 008265 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSE-GNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (572)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 149 (572)
...|+.+|..+++.|++++|+++|+.|...+ ..|+ ..+++.++.++.+.++++.|..++..|.+.|+.||..
T Consensus 87 ~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~-------~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~ 159 (697)
T PLN03081 87 GVSLCSQIEKLVACGRHREALELFEILEAGCPFTLP-------ASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQY 159 (697)
T ss_pred ceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCC-------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchH
Confidence 4689999999999999999999999999765 5666 4557888999999999999999999999999999877
Q ss_pred hhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcC-----CCchhHH
Q 008265 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV-----PRADILF 224 (572)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~-----~~~~~~~ 224 (572)
+++.++.++ .+.|+++.|.++|++|.+ ++..+|+.++.+|++.|++++|+++|+.| .++..+|
T Consensus 160 ----~~n~Li~~y---~k~g~~~~A~~lf~~m~~-----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~ 227 (697)
T PLN03081 160 ----MMNRVLLMH---VKCGMLIDARRLFDEMPE-----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTF 227 (697)
T ss_pred ----HHHHHHHHH---hcCCCHHHHHHHHhcCCC-----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhH
Confidence 666666654 448999999999999854 46789999999999999999999999987 3445899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc--
Q 008265 225 CNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA-- 302 (572)
Q Consensus 225 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-- 302 (572)
+.++.+|++.|+.+.+.+++..+.+.|+.||..+||.+|++|+++|++++|.++|++|.. +|..+||.+|.+|+
T Consensus 228 ~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~ 303 (697)
T PLN03081 228 VVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALH 303 (697)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999964 58999999999987
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHH
Q 008265 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382 (572)
Q Consensus 303 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 382 (572)
|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+ .| +.||..+|++||.+|++.|++++|
T Consensus 304 g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~---~g-~~~d~~~~~~Li~~y~k~G~~~~A 379 (697)
T PLN03081 304 GYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIR---TG-FPLDIVANTALVDLYSKWGRMEDA 379 (697)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHH---hC-CCCCeeehHHHHHHHHHCCCHHHH
Confidence 78999999999999999999999999999999999999999999999987 45 789999999999999999999999
Q ss_pred HHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhc
Q 008265 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (572)
Q Consensus 383 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 462 (572)
.++|++|. .||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||++++.+|++.|.+++|.++|+.|.+.
T Consensus 380 ~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~ 455 (697)
T PLN03081 380 RNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSEN 455 (697)
T ss_pred HHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 99999997 47999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred -ccccccccccCCchHHHHhhhhhccccccCCCCcccCCccchhhhhcCCCCCHHHHHHHHHHHhh--cHHHHHHHHHHH
Q 008265 463 -KTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEM 539 (572)
Q Consensus 463 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~a~~~--~~~~a~~~~~~m 539 (572)
+.. +...++.++++.+.+...... +.+.+++.++.||..+|++||.+|+. +.+.|..+++++
T Consensus 456 ~g~~-p~~~~y~~li~~l~r~G~~~e--------------A~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l 520 (697)
T PLN03081 456 HRIK-PRAMHYACMIELLGREGLLDE--------------AYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKL 520 (697)
T ss_pred cCCC-CCccchHhHHHHHHhcCCHHH--------------HHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 443 344556666666555444332 34567788899999999999999987 568999999998
Q ss_pred HhCCCCCC-HHHHHHHHHHHHccCCcccccccc
Q 008265 540 RTVGLSPN-HISWTILIDACGGSGNVEGALQCR 571 (572)
Q Consensus 540 ~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~ 571 (572)
.+ +.|+ ..+|..|+++|++.|+|++|.+++
T Consensus 521 ~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~ 551 (697)
T PLN03081 521 YG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVV 551 (697)
T ss_pred hC--CCCCCCcchHHHHHHHHhCCCHHHHHHHH
Confidence 65 5675 679999999999999999999875
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-57 Score=489.90 Aligned_cols=473 Identities=15% Similarity=0.164 Sum_probs=245.0
Q ss_pred hhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHH--hHHH--------------------------HHHHhhhhH
Q 008265 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFA--SMLS--------------------------LEMVASGIV 121 (572)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~--~~~~--------------------------~~~~~~~~~ 121 (572)
+...++.++.++++.|++++|..+|+.|.+.|..|+..+ .++. ....+.++.
T Consensus 50 ~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~ 129 (857)
T PLN03077 50 STHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLS 129 (857)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHH
Confidence 356677777777777777777777777776665544322 1110 112234444
Q ss_pred hhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCc------------
Q 008265 122 KSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVK------------ 189 (572)
Q Consensus 122 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~------------ 189 (572)
.|++.|+++.|.++|++|.+ ||.. +|+.++.+++ +.|++++|+++|++|...|+.|+
T Consensus 130 ~~~~~g~~~~A~~~f~~m~~----~d~~----~~n~li~~~~---~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~ 198 (857)
T PLN03077 130 MFVRFGELVHAWYVFGKMPE----RDLF----SWNVLVGGYA---KAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCG 198 (857)
T ss_pred HHHhCCChHHHHHHHhcCCC----CCee----EHHHHHHHHH---hCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhC
Confidence 55555555555555555532 2333 3444444332 24555555555555555444443
Q ss_pred ----------------------ccchHHHHHHHHhcCCChHHHHHhhhcCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHH
Q 008265 190 ----------------------ELDEEFRIVQLCVNKPDVNLAIRYACIVPRA-DILFCNFVREFGKKRDLVSALRAYDA 246 (572)
Q Consensus 190 ----------------------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~ 246 (572)
+..+++.++.+|++.|+++.|.++|+.|+.. ..+||++|.+|++.|++++|.++|++
T Consensus 199 ~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~ 278 (857)
T PLN03077 199 GIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFT 278 (857)
T ss_pred CccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHH
Confidence 2345556666666666666666666666443 35666666666666666666666666
Q ss_pred HHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc--CChHHHHHHHHHHHHcCCCCCH
Q 008265 247 SKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADM 324 (572)
Q Consensus 247 m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~~~~~~~ 324 (572)
|.+.|+.||..+|+.+|.+|++.|+++.|.+++..|.+.|+.||..+|+.+|.+|+ |++++|.++|++|. .||.
T Consensus 279 M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~ 354 (857)
T PLN03077 279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDA 354 (857)
T ss_pred HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCe
Confidence 66666666666666666666666666666666666666666666666666655543 45555555555543 2344
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHH
Q 008265 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404 (572)
Q Consensus 325 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 404 (572)
.+|+.+|.+|++.|++++|.++|++|.+ .| +.||..+|+.++.+|++.|++++|.+++..|.+.|+.|+..+|++|
T Consensus 355 ~s~n~li~~~~~~g~~~~A~~lf~~M~~---~g-~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~L 430 (857)
T PLN03077 355 VSWTAMISGYEKNGLPDKALETYALMEQ---DN-VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANAL 430 (857)
T ss_pred eeHHHHHHHHHhCCCHHHHHHHHHHHHH---hC-CCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 5555555555555555555555555543 22 4455555555555555555555555555555555544444444444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhh------------------------
Q 008265 405 INACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT------------------------ 460 (572)
Q Consensus 405 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~------------------------ 460 (572)
|.+|++.|++++|.++|++|. .+|..+|+++|.+|++.|+.++|.++|++|.
T Consensus 431 i~~y~k~g~~~~A~~vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~ 506 (857)
T PLN03077 431 IEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALM 506 (857)
T ss_pred HHHHHHcCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHH
Confidence 444444444444444444443 2233344444444444444444444444443
Q ss_pred ----------hcccccccccccCCchHHHHhhhhhccc----------------cccCCCCccc-------CCccchhhh
Q 008265 461 ----------LSKTQVALGEDYDGNTDRISNMEHKDKQ----------------SITNTPNFVP-------NSHYSSFDK 507 (572)
Q Consensus 461 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~-------~~~~~~~~~ 507 (572)
+.|..++.. .++. +..++.++.. .+..+...+. ...+++.|.
T Consensus 507 ~~~~i~~~~~~~g~~~~~~-~~na----Li~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~ 581 (857)
T PLN03077 507 CGKEIHAHVLRTGIGFDGF-LPNA----LLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMV 581 (857)
T ss_pred HhHHHHHHHHHhCCCccce-echH----HHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 222211100 0000 1111111100 0000000000 023455566
Q ss_pred hcCCCCCHHHHHHHHHHHhh--cHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHccCCccccccc
Q 008265 508 RFSFKPTTTTYNILMKACCT--DYYRVKALMNEMR-TVGLSPNHISWTILIDACGGSGNVEGALQC 570 (572)
Q Consensus 508 ~~~~~p~~~~~~~ll~a~~~--~~~~a~~~~~~m~-~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~ 570 (572)
+.|+.||..||+++|.+|++ ..++|.++|+.|. +.|+.|+..+|++|+++|++.|++++|.++
T Consensus 582 ~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~ 647 (857)
T PLN03077 582 ESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNF 647 (857)
T ss_pred HcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHH
Confidence 66777777777777777765 3467777777776 457777777777777777777777776654
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-56 Score=480.66 Aligned_cols=466 Identities=15% Similarity=0.189 Sum_probs=288.0
Q ss_pred CchhhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHH----------------------------HHHHhh
Q 008265 67 LSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLS----------------------------LEMVAS 118 (572)
Q Consensus 67 p~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~----------------------------~~~~~~ 118 (572)
|.++..+|+.+|.+|++.|++++|+++|++|...|+.|+.++.... ..+++.
T Consensus 148 ~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ 227 (857)
T PLN03077 148 PERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNA 227 (857)
T ss_pred CCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhH
Confidence 5567899999999999999999999999999999998886543211 112344
Q ss_pred hhHhhhhhCChhHHHHHHHHh-------------------------------hhcCCCCcchhhhhhhHHHHHHHHHHhh
Q 008265 119 GIVKSIREGRIDCVVGVLKKL-------------------------------NELGVAPLELFDGSGFKLLKNECQRLLD 167 (572)
Q Consensus 119 ~~~~~~~~g~~~~A~~~~~~m-------------------------------~~~~~~p~~~~~~~~~~~l~~~~~~~~~ 167 (572)
++..|++.|++++|..+|++| ...|+.||.. +|+.++.+|+.
T Consensus 228 Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~----ty~~ll~a~~~--- 300 (857)
T PLN03077 228 LITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLM----TITSVISACEL--- 300 (857)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChh----HHHHHHHHHHh---
Confidence 555555555555555555554 4444444433 33444443333
Q ss_pred hhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHH
Q 008265 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRA-DILFCNFVREFGKKRDLVSALRAYDA 246 (572)
Q Consensus 168 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~ 246 (572)
.|+++.|.+++..|.+.|+.| +..+|+.|+.+|++.|++++|.++|+.|+.. ..+|+++|.+|++.|++++|.++|++
T Consensus 301 ~g~~~~a~~l~~~~~~~g~~~-d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~ 379 (857)
T PLN03077 301 LGDERLGREMHGYVVKTGFAV-DVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYAL 379 (857)
T ss_pred cCChHHHHHHHHHHHHhCCcc-chHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHH
Confidence 344444444444444444433 2345555555555555555555555555432 25555555555555555555555555
Q ss_pred HHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc--CChHHHHHHHHHHHHcCCCCCH
Q 008265 247 SKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADM 324 (572)
Q Consensus 247 m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~~~~~~~ 324 (572)
|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.+|.+|+ |++++|.++|++|.+ +|.
T Consensus 380 M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~ 455 (857)
T PLN03077 380 MEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDV 455 (857)
T ss_pred HHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCe
Confidence 55555555555555555555555555555555555555555555555555555543 455555555555542 344
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHH
Q 008265 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404 (572)
Q Consensus 325 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 404 (572)
.+|+.+|.+|++.|+.++|..+|++|.. + +.||..+|+.++.+|++.|+++.+.+++..+.+.|+.+|..++|+|
T Consensus 456 vs~~~mi~~~~~~g~~~eA~~lf~~m~~----~-~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naL 530 (857)
T PLN03077 456 ISWTSIIAGLRLNNRCFEALIFFRQMLL----T-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNAL 530 (857)
T ss_pred eeHHHHHHHHHHCCCHHHHHHHHHHHHh----C-CCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHH
Confidence 5555555555555555555555555542 2 4566666666666666555555555555555555555555555556
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhcccccccccccCCchHHHHhhhh
Q 008265 405 INACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEH 484 (572)
Q Consensus 405 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (572)
|.+|++.|++++|.++|+.+ .||..+|+++|.+|++.|+.++|.++|++|.+.|..|+... +............
T Consensus 531 i~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T-~~~ll~a~~~~g~ 604 (857)
T PLN03077 531 LDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT-FISLLCACSRSGM 604 (857)
T ss_pred HHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc-HHHHHHHHhhcCh
Confidence 66666666666666666554 56777788888888888888888888888887776654322 2222111111111
Q ss_pred hccccccCCCCcccCCccchhhh-hcCCCCCHHHHHHHHHHHhh--cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 008265 485 KDKQSITNTPNFVPNSHYSSFDK-RFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGS 561 (572)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~ll~a~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 561 (572)
... ...+++.|. +.|+.|+..+|++++++|++ +.++|.+++++|. +.||..+|++|+.+|..+
T Consensus 605 v~e-----------a~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~ 670 (857)
T PLN03077 605 VTQ-----------GLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIH 670 (857)
T ss_pred HHH-----------HHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHc
Confidence 100 022345555 67899999999999999998 5699999999983 789999999999999999
Q ss_pred CCcccccc
Q 008265 562 GNVEGALQ 569 (572)
Q Consensus 562 g~~~~a~~ 569 (572)
|+.+.|+.
T Consensus 671 ~~~e~~e~ 678 (857)
T PLN03077 671 RHVELGEL 678 (857)
T ss_pred CChHHHHH
Confidence 99987654
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-52 Score=442.79 Aligned_cols=429 Identities=13% Similarity=0.212 Sum_probs=370.5
Q ss_pred hhhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcc
Q 008265 69 SRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLE 148 (572)
Q Consensus 69 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 148 (572)
++..+|+.++.++++.++++.|.+++..|.+.|+.|+ ..+++.++..|++.|++++|.++|++|.+ ||.
T Consensus 121 ~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~-------~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~ 189 (697)
T PLN03081 121 LPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPD-------QYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNL 189 (697)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcc-------hHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCe
Confidence 4579999999999999999999999999999999988 45588889999999999999999999965 566
Q ss_pred hhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcC-----CCchhH
Q 008265 149 LFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV-----PRADIL 223 (572)
Q Consensus 149 ~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~-----~~~~~~ 223 (572)
. +|+.++.+++. .|++++|+++|++|.+.|..|+ ..+++.++.+|+..|..+.+.+++..+ .++..+
T Consensus 190 ~----t~n~li~~~~~---~g~~~~A~~lf~~M~~~g~~p~-~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~ 261 (697)
T PLN03081 190 A----SWGTIIGGLVD---AGNYREAFALFREMWEDGSDAE-PRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFV 261 (697)
T ss_pred e----eHHHHHHHHHH---CcCHHHHHHHHHHHHHhCCCCC-hhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCcccee
Confidence 5 67777776554 7999999999999999998765 478999999999999999999987764 455689
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc-
Q 008265 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA- 302 (572)
Q Consensus 224 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~- 302 (572)
+++||.+|++.|++++|.++|+.|.+ +|..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+++
T Consensus 262 ~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~ 337 (697)
T PLN03081 262 SCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSR 337 (697)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999965 6899999999999999999999999999999999999999999999987
Q ss_pred -CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHH
Q 008265 303 -HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381 (572)
Q Consensus 303 -~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 381 (572)
|++++|.+++..|.+.|+.||..++++++++|++.|++++|.++|++|. .||..+||+||.+|++.|+.++
T Consensus 338 ~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~--------~~d~~t~n~lI~~y~~~G~~~~ 409 (697)
T PLN03081 338 LALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP--------RKNLISWNALIAGYGNHGRGTK 409 (697)
T ss_pred ccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC--------CCCeeeHHHHHHHHHHcCCHHH
Confidence 7899999999999999999999999999999999999999999999985 5799999999999999999999
Q ss_pred HHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhh
Q 008265 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ-AGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (572)
Q Consensus 382 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (572)
|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+ .|+.|+..+|++++++|++.|++++|.+++++|.
T Consensus 410 A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~ 489 (697)
T PLN03081 410 AVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP 489 (697)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC
Confidence 999999999999999999999999999999999999999999986 6999999999999999999999999999998874
Q ss_pred hcccccccccccCCchHHHHhhhhhccccccCCCCcccCCccchhhhhcCCCC-CHHHHHHHHHHHhh--cHHHHHHHHH
Q 008265 461 LSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKP-TTTTYNILMKACCT--DYYRVKALMN 537 (572)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~ll~a~~~--~~~~a~~~~~ 537 (572)
.. ++. ..+................ ..+. .+..++.| +..+|+.|+..|++ ++++|.++++
T Consensus 490 ~~---p~~-~~~~~Ll~a~~~~g~~~~a-----------~~~~--~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~ 552 (697)
T PLN03081 490 FK---PTV-NMWAALLTACRIHKNLELG-----------RLAA--EKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVE 552 (697)
T ss_pred CC---CCH-HHHHHHHHHHHHcCCcHHH-----------HHHH--HHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHH
Confidence 22 111 1111111111110000000 0001 11234556 46799999999997 6799999999
Q ss_pred HHHhCCCC
Q 008265 538 EMRTVGLS 545 (572)
Q Consensus 538 ~m~~~g~~ 545 (572)
+|.+.|+.
T Consensus 553 ~m~~~g~~ 560 (697)
T PLN03081 553 TLKRKGLS 560 (697)
T ss_pred HHHHcCCc
Confidence 99999975
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.8e-23 Score=225.30 Aligned_cols=465 Identities=12% Similarity=0.065 Sum_probs=339.6
Q ss_pred hhhhcccCCchhhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHH
Q 008265 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (572)
Q Consensus 59 ~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 138 (572)
+.+.+...|.. ......++..+.+.|++++|.++++.+....+.. ...+..+...+...|++++|...|++
T Consensus 420 ~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~ 490 (899)
T TIGR02917 420 LETAAQLDPEL-GRADLLLILSYLRSGQFDKALAAAKKLEKKQPDN--------ASLHNLLGAIYLGKGDLAKAREAFEK 490 (899)
T ss_pred HHHHHhhCCcc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--------cHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 44444555554 4566677888889999999999999988764321 23355566678889999999999998
Q ss_pred hhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcC-
Q 008265 139 LNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV- 217 (572)
Q Consensus 139 m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~- 217 (572)
+.+. .|+.. ..+..+.. .+...|++++|...++.+.+. .|.+...+..+...+.+.|+.++|...++.+
T Consensus 491 a~~~--~~~~~---~~~~~la~---~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 560 (899)
T TIGR02917 491 ALSI--EPDFF---PAAANLAR---IDIQEGNPDDAIQRFEKVLTI--DPKNLRAILALAGLYLRTGNEEEAVAWLEKAA 560 (899)
T ss_pred HHhh--CCCcH---HHHHHHHH---HHHHCCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8775 34322 12222222 234478999999999998865 3566677888899999999999999888765
Q ss_pred ---CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 008265 218 ---PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVF 294 (572)
Q Consensus 218 ---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 294 (572)
|.+...+..++..+.+.|++++|..+++.+.+. .+.+...|..+..+|.+.|++++|...|+.+.+.. +.+...+
T Consensus 561 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 638 (899)
T TIGR02917 561 ELNPQEIEPALALAQYYLGKGQLKKALAILNEAADA-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALAL 638 (899)
T ss_pred HhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 444467778889999999999999999998765 34567788999999999999999999999988753 2345556
Q ss_pred HHHHHHh--cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008265 295 NSLMNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372 (572)
Q Consensus 295 ~~ll~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 372 (572)
..+..++ .|++++|...++++.+... .+..++..+...+...|++++|..+++.+... .+.+...+..+...
T Consensus 639 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~ 712 (899)
T TIGR02917 639 LLLADAYAVMKNYAKAITSLKRALELKP-DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ-----HPKAALGFELEGDL 712 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CcCChHHHHHHHHH
Confidence 6665554 4889999999999887543 35778888899999999999999999988763 24566788888888
Q ss_pred HHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHH
Q 008265 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452 (572)
Q Consensus 373 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 452 (572)
+.+.|++++|.+.|+.+... .|+..++..+..++.+.|++++|.+.++.+.+.. +.+...+..+...|.+.|++++|
T Consensus 713 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A 789 (899)
T TIGR02917 713 YLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKA 789 (899)
T ss_pred HHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHH
Confidence 99999999999999998887 4555777888889999999999999999988764 55778888888899999999999
Q ss_pred HHHHHHhhhcccccccccccCCchHHHHhhhhhccccccCCCCcccCCccchhhhhcCCCC-CHHHHHHHHHHHhh--cH
Q 008265 453 FRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKP-TTTTYNILMKACCT--DY 529 (572)
Q Consensus 453 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~ll~a~~~--~~ 529 (572)
.++|+++.+..+..+.. ............. . ..+....+.....| +..++..+...+.. +.
T Consensus 790 ~~~~~~~~~~~p~~~~~--~~~l~~~~~~~~~---~-----------~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 853 (899)
T TIGR02917 790 IKHYRTVVKKAPDNAVV--LNNLAWLYLELKD---P-----------RALEYAEKALKLAPNIPAILDTLGWLLVEKGEA 853 (899)
T ss_pred HHHHHHHHHhCCCCHHH--HHHHHHHHHhcCc---H-----------HHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH
Confidence 99999987654321110 0000000000000 0 00000001111223 44556666666654 67
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCccccccc
Q 008265 530 YRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQC 570 (572)
Q Consensus 530 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~ 570 (572)
++|..+++++.+.+. .+..++..+..++.+.|++++|.++
T Consensus 854 ~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~ 893 (899)
T TIGR02917 854 DRALPLLRKAVNIAP-EAAAIRYHLALALLATGRKAEARKE 893 (899)
T ss_pred HHHHHHHHHHHhhCC-CChHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999764 3888999999999999999999875
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.7e-22 Score=217.38 Aligned_cols=466 Identities=13% Similarity=0.058 Sum_probs=352.2
Q ss_pred hhhhcccCCchhhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHH
Q 008265 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (572)
Q Consensus 59 ~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 138 (572)
+.+.+...|+. ...+..+...+...|++++|.+.|+.+.+...... .....++..+.+.|++++|+.+++.
T Consensus 386 ~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--------~~~~~l~~~~~~~~~~~~A~~~~~~ 456 (899)
T TIGR02917 386 LAKATELDPEN-AAARTQLGISKLSQGDPSEAIADLETAAQLDPELG--------RADLLLILSYLRSGQFDKALAAAKK 456 (899)
T ss_pred HHHHHhcCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcch--------hhHHHHHHHHHhcCCHHHHHHHHHH
Confidence 44444555654 67888889999999999999999999988754422 2233456678899999999999999
Q ss_pred hhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcC-
Q 008265 139 LNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV- 217 (572)
Q Consensus 139 m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~- 217 (572)
+... .|+.. ..+..+..+ +...|++++|...|+++.+. .|.+...+..+...+...|++++|.+.++.+
T Consensus 457 ~~~~--~~~~~---~~~~~l~~~---~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 526 (899)
T TIGR02917 457 LEKK--QPDNA---SLHNLLGAI---YLGKGDLAKAREAFEKALSI--EPDFFPAAANLARIDIQEGNPDDAIQRFEKVL 526 (899)
T ss_pred HHHh--CCCCc---HHHHHHHHH---HHhCCCHHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9875 33321 133333333 34579999999999998864 4666777888999999999999999998875
Q ss_pred ---CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 008265 218 ---PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVF 294 (572)
Q Consensus 218 ---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 294 (572)
|.+..++..+...+.+.|+.++|..+++.+.+.+ +.+...+..+...|.+.|++++|..+++.+.+.. +.+...|
T Consensus 527 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 604 (899)
T TIGR02917 527 TIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAW 604 (899)
T ss_pred HhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHH
Confidence 5556788899999999999999999999998764 3466788889999999999999999999998753 4566778
Q ss_pred HHHHHHhc--CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008265 295 NSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372 (572)
Q Consensus 295 ~~ll~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 372 (572)
..+..++. |++++|...|+.+.+... .+...+..+..++.+.|++++|..+|+.+.+. .+.+...+..++..
T Consensus 605 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~ 678 (899)
T TIGR02917 605 LMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALEL-----KPDNTEAQIGLAQL 678 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHH
Confidence 87777654 899999999999987653 36778889999999999999999999999863 24457799999999
Q ss_pred HHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHH
Q 008265 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452 (572)
Q Consensus 373 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 452 (572)
+...|++++|.++++.+.+.+. .+...+..+...+...|++++|.+.|+.+... .|+..++..+..++.+.|++++|
T Consensus 679 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A 755 (899)
T TIGR02917 679 LLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEA 755 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999998753 46678888999999999999999999999887 45557888899999999999999
Q ss_pred HHHHHHhhhcccccccccccCCchHHHHhhhhhccccccCCCCcccCCccchhhhhcCCCCCHHHHHHHHHHHhhcH-HH
Q 008265 453 FRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDY-YR 531 (572)
Q Consensus 453 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~a~~~~~-~~ 531 (572)
.+.++++.+........ ................. ...++.+... ...+...++.+...+.+.+ .+
T Consensus 756 ~~~~~~~l~~~~~~~~~--~~~la~~~~~~g~~~~A-----------~~~~~~~~~~-~p~~~~~~~~l~~~~~~~~~~~ 821 (899)
T TIGR02917 756 VKTLEAWLKTHPNDAVL--RTALAELYLAQKDYDKA-----------IKHYRTVVKK-APDNAVVLNNLAWLYLELKDPR 821 (899)
T ss_pred HHHHHHHHHhCCCCHHH--HHHHHHHHHHCcCHHHH-----------HHHHHHHHHh-CCCCHHHHHHHHHHHHhcCcHH
Confidence 99999988754321110 00000000000000000 0011111111 1346777887777776522 67
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCCccccccc
Q 008265 532 VKALMNEMRTVGLSP-NHISWTILIDACGGSGNVEGALQC 570 (572)
Q Consensus 532 a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~ 570 (572)
|..++++..+. .| +..++..+..+|.+.|++++|.++
T Consensus 822 A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~ 859 (899)
T TIGR02917 822 ALEYAEKALKL--APNIPAILDTLGWLLVEKGEADRALPL 859 (899)
T ss_pred HHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888764 34 345677788888889999888764
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-19 Score=178.00 Aligned_cols=282 Identities=12% Similarity=0.085 Sum_probs=201.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008265 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPN---MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298 (572)
Q Consensus 222 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 298 (572)
.++..+...+...|++++|..+++.+...+..++ ...+..+...|.+.|++++|..+|+++.+.. +.+..+++.+.
T Consensus 70 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la 148 (389)
T PRK11788 70 ELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLL 148 (389)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHH
Confidence 4556666666667777777777766665422221 2355666667777777777777777776542 23445555555
Q ss_pred HHhc--CChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008265 299 NVNA--HDLKFTLEVYKNMQKLGVMADM----ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372 (572)
Q Consensus 299 ~~~~--~~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 372 (572)
..+. |++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++|...|+++.+. .+.+...+..+...
T Consensus 149 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~la~~ 223 (389)
T PRK11788 149 EIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAA-----DPQCVRASILLGDL 223 (389)
T ss_pred HHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH-----CcCCHHHHHHHHHH
Confidence 5443 6677777777777665433221 23456677788899999999999998863 13345677888889
Q ss_pred HHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHH
Q 008265 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452 (572)
Q Consensus 373 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 452 (572)
+.+.|++++|.++++++.+.+......+++.++.+|...|++++|...++++.+. .|+...+..+...+.+.|++++|
T Consensus 224 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A 301 (389)
T PRK11788 224 ALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAA 301 (389)
T ss_pred HHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHH
Confidence 9999999999999999887643323466788899999999999999999998876 46666778888899999999999
Q ss_pred HHHHHHhhhcccccccccccCCchHHHHhhhhhccccccCCCCcccCCccchhhhhcCCCCCHHHHHHHHHHHhh-----
Q 008265 453 FRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT----- 527 (572)
Q Consensus 453 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~a~~~----- 527 (572)
..+++++.+ ..|+..+++.++..+..
T Consensus 302 ~~~l~~~l~-------------------------------------------------~~P~~~~~~~l~~~~~~~~~~g 332 (389)
T PRK11788 302 QALLREQLR-------------------------------------------------RHPSLRGFHRLLDYHLAEAEEG 332 (389)
T ss_pred HHHHHHHHH-------------------------------------------------hCcCHHHHHHHHHHhhhccCCc
Confidence 999988764 25888888888877663
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCccc
Q 008265 528 DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEG 566 (572)
Q Consensus 528 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 566 (572)
+.+++..++++|.+.++.|++. .+|.++|...+
T Consensus 333 ~~~~a~~~~~~~~~~~~~~~p~------~~c~~cg~~~~ 365 (389)
T PRK11788 333 RAKESLLLLRDLVGEQLKRKPR------YRCRNCGFTAR 365 (389)
T ss_pred cchhHHHHHHHHHHHHHhCCCC------EECCCCCCCCc
Confidence 4568889999999888777766 34666666543
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.2e-18 Score=167.11 Aligned_cols=297 Identities=13% Similarity=0.064 Sum_probs=203.4
Q ss_pred hhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHh
Q 008265 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (572)
Q Consensus 123 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 202 (572)
+...|++++|+..|+++.+. .|+.. ..+..+.. .+...|++++|+.+++.+......+... .
T Consensus 45 ~~~~~~~~~A~~~~~~al~~--~p~~~---~~~~~la~---~~~~~g~~~~A~~~~~~~l~~~~~~~~~-~--------- 106 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKV--DPETV---ELHLALGN---LFRRRGEVDRAIRIHQNLLSRPDLTREQ-R--------- 106 (389)
T ss_pred HHhcCChHHHHHHHHHHHhc--CcccH---HHHHHHHH---HHHHcCcHHHHHHHHHHHhcCCCCCHHH-H---------
Confidence 44667777777777777765 34321 12222222 2234677777777777776653222110 0
Q ss_pred cCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008265 203 NKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282 (572)
Q Consensus 203 ~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m 282 (572)
...+..+...|.+.|++++|..+|+.+.+.. ..+..+++.++..+.+.|++++|.+.++.+
T Consensus 107 ------------------~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 167 (389)
T PRK11788 107 ------------------LLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERL 167 (389)
T ss_pred ------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 0245566667777777777777777776542 235567777777777777777777777777
Q ss_pred HhCCCCCCH----HHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q 008265 283 RSQNVTLNI----YVFNSLMNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK 356 (572)
Q Consensus 283 ~~~g~~p~~----~~~~~ll~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 356 (572)
.+.+..++. ..+..+...+ .+++++|...|+++.+... .+...+..+...+.+.|++++|.++|+++...
T Consensus 168 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--- 243 (389)
T PRK11788 168 EKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQ--- 243 (389)
T ss_pred HHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---
Confidence 665432221 1222232222 3677777777777766432 24556777888899999999999999998863
Q ss_pred CCCCCC--HHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 008265 357 GVLKLD--VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434 (572)
Q Consensus 357 ~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 434 (572)
.|+ ..+++.++.+|.+.|++++|...++++.+. .|+...+..+...+.+.|++++|..+++++.+. .|+..
T Consensus 244 ---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~ 316 (389)
T PRK11788 244 ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLR 316 (389)
T ss_pred ---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHH
Confidence 233 356788889999999999999999998876 466667788899999999999999999988876 68888
Q ss_pred HHHHHHHHHHH---hCCHhHHHHHHHHhhhcccccc
Q 008265 435 CCNILLQACVE---ACQFDRAFRLFRSWTLSKTQVA 467 (572)
Q Consensus 435 ~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~~ 467 (572)
+++.++..+.. .|+.+++..++++|.+.++.++
T Consensus 317 ~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 317 GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence 88888887765 5588899999999988776554
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-17 Score=158.62 Aligned_cols=367 Identities=14% Similarity=0.110 Sum_probs=307.8
Q ss_pred hhcccCCchhhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhh
Q 008265 61 STVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLN 140 (572)
Q Consensus 61 ~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~ 140 (572)
..++..|.- ..+|..+...+-..|++++|+++++.+++.. |+ -.+++..+..++...|+.+.|...|.+..
T Consensus 107 ~a~r~~~q~-ae~ysn~aN~~kerg~~~~al~~y~~aiel~--p~------fida~inla~al~~~~~~~~a~~~~~~al 177 (966)
T KOG4626|consen 107 LAIRKNPQG-AEAYSNLANILKERGQLQDALALYRAAIELK--PK------FIDAYINLAAALVTQGDLELAVQCFFEAL 177 (966)
T ss_pred hhhhccchH-HHHHHHHHHHHHHhchHHHHHHHHHHHHhcC--ch------hhHHHhhHHHHHHhcCCCcccHHHHHHHH
Confidence 334444554 7899999999999999999999999999884 43 26678888889999999999999999888
Q ss_pred hcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCC-
Q 008265 141 ELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR- 219 (572)
Q Consensus 141 ~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~- 219 (572)
+. .|+.....+-...++++ .|++++|...+.+..+. .|.-.+.|+.|.-.+-.+|+.-.|+..|.+...
T Consensus 178 ql--nP~l~ca~s~lgnLlka------~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl 247 (966)
T KOG4626|consen 178 QL--NPDLYCARSDLGNLLKA------EGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL 247 (966)
T ss_pred hc--CcchhhhhcchhHHHHh------hcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC
Confidence 75 67766555555555553 69999999999887764 566678899999999999999999999887522
Q ss_pred ---chhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHH
Q 008265 220 ---ADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPN-MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN-IYVF 294 (572)
Q Consensus 220 ---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~ 294 (572)
-...|-.|...|...+.++.|...|.+.... .|+ ...+..+...|-..|.+|.|++.|++..+. .|+ ...|
T Consensus 248 dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay 323 (966)
T KOG4626|consen 248 DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAY 323 (966)
T ss_pred CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHH
Confidence 2378999999999999999999999887764 344 567888888899999999999999999876 565 5788
Q ss_pred HHHHHHhc--CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCH-HHHHHHHH
Q 008265 295 NSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV-FTYSTIVK 371 (572)
Q Consensus 295 ~~ll~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~li~ 371 (572)
+.+-.+.. |+..+|.+.+.+....... .....+.|...|...|.+++|..+|....+ +.|.. ..++.|..
T Consensus 324 ~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~------v~p~~aaa~nNLa~ 396 (966)
T KOG4626|consen 324 NNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALE------VFPEFAAAHNNLAS 396 (966)
T ss_pred hHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHh------hChhhhhhhhhHHH
Confidence 98888865 8999999999999886433 467789999999999999999999999987 45654 47899999
Q ss_pred HHHccccHHHHHHHHHHHHHCCCCCch-hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHhCCH
Q 008265 372 VFADAKWWQMALKVKEDMLSAGVTPNT-ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN-SQCCNILLQACVEACQF 449 (572)
Q Consensus 372 ~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~ 449 (572)
.|-..|++++|+.-+++...- .|+- ..|+.+-..|...|+++.|.+.+.+.... .|. ...++.|...|-..|++
T Consensus 397 i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni 472 (966)
T KOG4626|consen 397 IYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNI 472 (966)
T ss_pred HHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCc
Confidence 999999999999999998875 6654 67899999999999999999999998875 454 46789999999999999
Q ss_pred hHHHHHHHHhhh
Q 008265 450 DRAFRLFRSWTL 461 (572)
Q Consensus 450 ~~A~~~~~~m~~ 461 (572)
.+|+.-|++..+
T Consensus 473 ~~AI~sY~~aLk 484 (966)
T KOG4626|consen 473 PEAIQSYRTALK 484 (966)
T ss_pred HHHHHHHHHHHc
Confidence 999999988764
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.3e-15 Score=167.64 Aligned_cols=418 Identities=10% Similarity=0.013 Sum_probs=300.6
Q ss_pred HHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchh---hh--
Q 008265 78 ASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF---DG-- 152 (572)
Q Consensus 78 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~---~~-- 152 (572)
...+...|++++|+..|++.++..+. . ..++..+...+.+.|++++|+..|++..+.. |+... +.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~--~------~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~--p~~~~~~~~~~l 345 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPK--D------SEALGALGQAYSQQGDRARAVAQFEKALALD--PHSSNRDKWESL 345 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC--C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCccchhHHHHH
Confidence 45567789999999999999987443 1 4456667778899999999999999988763 33210 00
Q ss_pred ---hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcC----CCchhHHH
Q 008265 153 ---SGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFC 225 (572)
Q Consensus 153 ---~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~~~~ 225 (572)
..+..++.....+.+.|++++|+..|++..+. .|.+...+..+...+...|++++|++.|+.. |.+...+.
T Consensus 346 l~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~ 423 (1157)
T PRK11447 346 LKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV--DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVR 423 (1157)
T ss_pred HHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 01122222223345689999999999999875 5667677888999999999999999998875 44556667
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCC--------CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHH
Q 008265 226 NFVREFGKKRDLVSALRAYDASKKHLSS--------PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN-IYVFNS 296 (572)
Q Consensus 226 ~li~~~~~~g~~~~a~~~~~~m~~~~~~--------~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ 296 (572)
.+...|. .++.++|..+++.+...... .....+..+...+...|++++|.+.|++..+. .|+ ...+..
T Consensus 424 ~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~ 500 (1157)
T PRK11447 424 GLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYR 500 (1157)
T ss_pred HHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 7777774 46789999988765432100 11234556777888999999999999999876 454 334444
Q ss_pred HHHHh--cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCC---------HHH
Q 008265 297 LMNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD---------VFT 365 (572)
Q Consensus 297 ll~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---------~~~ 365 (572)
+...+ .|++++|...++++.+.... +...+..+...+...++.++|...++.+.... ..++ ...
T Consensus 501 LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~----~~~~~~~l~~~l~~~~ 575 (1157)
T PRK11447 501 LAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQ----WNSNIQELAQRLQSDQ 575 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchh----cChhHHHHHHHHhhhH
Confidence 44443 48999999999999875432 44455555556778899999999988764310 1111 112
Q ss_pred HHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 008265 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445 (572)
Q Consensus 366 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 445 (572)
+..+...+...|+.++|+++++. ...+...+..+...+.+.|+.++|++.|++..+.. +.+...+..+...+..
T Consensus 576 ~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~ 649 (1157)
T PRK11447 576 VLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIA 649 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 33456778889999999999882 23455667788899999999999999999999874 4467889999999999
Q ss_pred hCCHhHHHHHHHHhhhcccccccccccCCchHHHHhhhhhccccccCCCCcccCCccchhhhhcCCCC-CHHHHHHHHHH
Q 008265 446 ACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKP-TTTTYNILMKA 524 (572)
Q Consensus 446 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~ll~a 524 (572)
.|+.++|.+.++...+. .| +..++..+-.+
T Consensus 650 ~g~~~eA~~~l~~ll~~-------------------------------------------------~p~~~~~~~~la~~ 680 (1157)
T PRK11447 650 QGDLAAARAQLAKLPAT-------------------------------------------------ANDSLNTQRRVALA 680 (1157)
T ss_pred CCCHHHHHHHHHHHhcc-------------------------------------------------CCCChHHHHHHHHH
Confidence 99999999999976542 22 33445545555
Q ss_pred Hhh--cHHHHHHHHHHHHhCCC--CC---CHHHHHHHHHHHHccCCccccccc
Q 008265 525 CCT--DYYRVKALMNEMRTVGL--SP---NHISWTILIDACGGSGNVEGALQC 570 (572)
Q Consensus 525 ~~~--~~~~a~~~~~~m~~~g~--~p---~~~~~~~l~~~~~~~g~~~~a~~~ 570 (572)
+.. +.++|.++++.+....- .| +...+..+...+...|++++|++.
T Consensus 681 ~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~ 733 (1157)
T PRK11447 681 WAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALET 733 (1157)
T ss_pred HHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 543 67899999999886431 22 234666677888899999998764
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.5e-15 Score=163.07 Aligned_cols=377 Identities=9% Similarity=0.044 Sum_probs=278.1
Q ss_pred hhhhcccCCchhhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChh---HHHhHHHH---HHHhhhhHhhhhhCChhHH
Q 008265 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVS---KFASMLSL---EMVASGIVKSIREGRIDCV 132 (572)
Q Consensus 59 ~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~~~---~~~~~~~~~~~~~g~~~~A 132 (572)
+.+.+...|+. ...+..+...+.+.|++++|+..|++..+..++.. .+..++.. .........+.+.|++++|
T Consensus 292 l~~aL~~~P~~-~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA 370 (1157)
T PRK11447 292 LQQAVRANPKD-SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQA 370 (1157)
T ss_pred HHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHH
Confidence 44555666765 68888999999999999999999999988754321 12222211 1112234457789999999
Q ss_pred HHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHH
Q 008265 133 VGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIR 212 (572)
Q Consensus 133 ~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 212 (572)
+..|++..+. .|+.. ..+..+.. .+...|++++|++.|++..+. .|.+...+..+...+. .++.++|+.
T Consensus 371 ~~~~~~Al~~--~P~~~---~a~~~Lg~---~~~~~g~~~eA~~~y~~aL~~--~p~~~~a~~~L~~l~~-~~~~~~A~~ 439 (1157)
T PRK11447 371 ERLYQQARQV--DNTDS---YAVLGLGD---VAMARKDYAAAERYYQQALRM--DPGNTNAVRGLANLYR-QQSPEKALA 439 (1157)
T ss_pred HHHHHHHHHh--CCCCH---HHHHHHHH---HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH-hcCHHHHHH
Confidence 9999999886 45432 12222222 334589999999999999875 4566566767777764 467899999
Q ss_pred hhhcCCCch-------------hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 008265 213 YACIVPRAD-------------ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIY 279 (572)
Q Consensus 213 ~~~~~~~~~-------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 279 (572)
+++.++... ..+..+...+...|++++|.+.|++..+..+. +...+..+...|.+.|++++|...|
T Consensus 440 ~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l 518 (1157)
T PRK11447 440 FIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALM 518 (1157)
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 988775432 23445677888999999999999999886432 5667788889999999999999999
Q ss_pred HHHHhCCCCCC-HHH-HH-HHHHHhcCChHHHHHHHHHHHHcCCCCCHH---------HHHHHHHHHHHcCChHHHHHHH
Q 008265 280 EDLRSQNVTLN-IYV-FN-SLMNVNAHDLKFTLEVYKNMQKLGVMADMA---------SYNILLKACCLAGNTVLAQEIY 347 (572)
Q Consensus 280 ~~m~~~g~~p~-~~~-~~-~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~---------~~~~ll~~~~~~g~~~~a~~~~ 347 (572)
+++.+.. |+ ... |. .++....++.++|+..++.+......++.. .+..+...+...|+.++|.+++
T Consensus 519 ~~al~~~--P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l 596 (1157)
T PRK11447 519 RRLAQQK--PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALL 596 (1157)
T ss_pred HHHHHcC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 9998753 32 222 22 222234578999999988765432222221 2234567788999999999998
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
+. .+.+...+..+...+.+.|++++|++.|++..+.... +...+..+...|...|+.++|.+.++...+.
T Consensus 597 ~~---------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 597 RQ---------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred Hh---------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 72 2456667788899999999999999999999987432 5678899999999999999999999988765
Q ss_pred CCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 428 GCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 428 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
. +.+..++..+..++...|++++|.++++++..
T Consensus 667 ~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 699 (1157)
T PRK11447 667 A-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIP 699 (1157)
T ss_pred C-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 2 33456677788889999999999999998865
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.8e-15 Score=154.27 Aligned_cols=356 Identities=10% Similarity=0.013 Sum_probs=262.3
Q ss_pred HhhcCChhHHHHHHHHHHhhcCC-hhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHH
Q 008265 81 LAKDGRLEEFAMIVESVVVSEGN-VSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLK 159 (572)
Q Consensus 81 ~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~ 159 (572)
+.+..+|+...-.|....+...+ .+. ..-+..++..+.+.|++++|+.+++...... |+.. ..+..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~---~~l~~l~ 83 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGN------EQNIILFAIACLRKDETDVGLTLLSDRVLTA--KNGR---DLLRRWV 83 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhccc------ccCHHHHHHHHHhcCCcchhHHHhHHHHHhC--CCch---hHHHHHh
Confidence 34556666655555544433211 110 1113335666789999999999999888873 3321 1222222
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcC----CCchhHHHHHHHHHHhcC
Q 008265 160 NECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKR 235 (572)
Q Consensus 160 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g 235 (572)
.+. ...|++++|+..++++.+. .|.+...+..+...+...|++++|...++.. |.+...+..+...+...|
T Consensus 84 ~~~---l~~g~~~~A~~~l~~~l~~--~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g 158 (656)
T PRK15174 84 ISP---LASSQPDAVLQVVNKLLAV--NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMD 158 (656)
T ss_pred hhH---hhcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Confidence 222 2379999999999999874 5777788889999999999999999988774 555678888999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--hcCChHHHHHHHH
Q 008265 236 DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYK 313 (572)
Q Consensus 236 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~--~~~~~~~a~~~~~ 313 (572)
++++|...++.+......+ ...+..+ ..+...|++++|...++.+.+....++...+..+..+ ..|++++|...++
T Consensus 159 ~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~ 236 (656)
T PRK15174 159 KELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGE 236 (656)
T ss_pred ChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999887654433 3333333 3478899999999999998776433334444333333 3489999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCChHH----HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHH
Q 008265 314 NMQKLGVMADMASYNILLKACCLAGNTVL----AQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM 389 (572)
Q Consensus 314 ~m~~~~~~~~~~~~~~ll~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 389 (572)
+..+.+.. +...+..+...+...|++++ |...|+...+. .+.+...+..+...+.+.|++++|+..+++.
T Consensus 237 ~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l-----~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~a 310 (656)
T PRK15174 237 SALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF-----NSDNVRIVTLYADALIRTGQNEKAIPLLQQS 310 (656)
T ss_pred HHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99886543 57778888999999999986 78999998873 1345668899999999999999999999999
Q ss_pred HHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHhCCHhHHHHHHHHhhhcc
Q 008265 390 LSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS-QCCNILLQACVEACQFDRAFRLFRSWTLSK 463 (572)
Q Consensus 390 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 463 (572)
.+.... +...+..+..++.+.|++++|...++++.+. .|+. ..+..+..++...|+.++|...|++..+..
T Consensus 311 l~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 311 LATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 887432 4456777889999999999999999999876 4544 334445677899999999999999887654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.4e-14 Score=147.61 Aligned_cols=393 Identities=11% Similarity=-0.023 Sum_probs=261.8
Q ss_pred HHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhh
Q 008265 73 YYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDG 152 (572)
Q Consensus 73 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 152 (572)
.+......+.+.|++++|+..|++.+...++| ..+..+...|...|++++|++.+.+..+. .|+.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~---------~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~---- 193 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPDP---------VYYSNRAACHNALGDWEKVVEDTTAALEL--DPDY---- 193 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCch---------HHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCC----
Confidence 45567778888999999999999998775442 23556677889999999999999998876 4542
Q ss_pred hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCc------------
Q 008265 153 SGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRA------------ 220 (572)
Q Consensus 153 ~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------------ 220 (572)
...+......+...|++++|+.-|......+- ........++..+........+...+..-+..
T Consensus 194 --~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~ 269 (615)
T TIGR00990 194 --SKALNRRANAYDGLGKYADALLDLTASCIIDG--FRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQ 269 (615)
T ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 12222323334457999999887765543321 11011111111111111111122222111111
Q ss_pred ---------------------hhHHHHHHHH---HHhcCCHHHHHHHHHHHHhcC-CCC-cHHHHHHHHHHHHhcCCHHH
Q 008265 221 ---------------------DILFCNFVRE---FGKKRDLVSALRAYDASKKHL-SSP-NMYICRTIIDVCGICGDYMK 274 (572)
Q Consensus 221 ---------------------~~~~~~li~~---~~~~g~~~~a~~~~~~m~~~~-~~~-~~~~~~~ll~~~~~~g~~~~ 274 (572)
...+..+... ....+++++|.+.|+...+.+ ..| ....|+.+...+...|++++
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~e 349 (615)
T TIGR00990 270 SFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLE 349 (615)
T ss_pred HccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHH
Confidence 0111111111 123468899999999988764 223 45678888888899999999
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHH--hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008265 275 SRAIYEDLRSQNVTLN-IYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351 (572)
Q Consensus 275 a~~~~~~m~~~g~~p~-~~~~~~ll~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 351 (572)
|+..|++..+. .|+ ...|..+... ..|++++|...|++..+.... +...+..+...+...|++++|...|++..
T Consensus 350 A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal 426 (615)
T TIGR00990 350 ALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSI 426 (615)
T ss_pred HHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999998876 344 3344444333 448999999999998876433 57788888999999999999999999998
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008265 352 HLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431 (572)
Q Consensus 352 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 431 (572)
.+ .+.+...+..+...+.+.|++++|+..|++..+.. +-+...|+.+...+...|++++|.+.|++..+..-..
T Consensus 427 ~l-----~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~ 500 (615)
T TIGR00990 427 DL-----DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKET 500 (615)
T ss_pred Hc-----CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc
Confidence 73 13356678888889999999999999999988752 2246788889999999999999999999988653111
Q ss_pred -----CH-HHHHHHHHHHHHhCCHhHHHHHHHHhhhcccccccccccCCchHHHHhhhhhccccccCCCCcccCCccchh
Q 008265 432 -----NS-QCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSF 505 (572)
Q Consensus 432 -----~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (572)
+. ..++.....+...|++++|.+++++....
T Consensus 501 ~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l------------------------------------------- 537 (615)
T TIGR00990 501 KPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII------------------------------------------- 537 (615)
T ss_pred ccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc-------------------------------------------
Confidence 11 11222222344468999999999876542
Q ss_pred hhhcCCCC-CHHHHHHHHHHHhh--cHHHHHHHHHHHHhC
Q 008265 506 DKRFSFKP-TTTTYNILMKACCT--DYYRVKALMNEMRTV 542 (572)
Q Consensus 506 ~~~~~~~p-~~~~~~~ll~a~~~--~~~~a~~~~~~m~~~ 542 (572)
.| +...+..+...+.. +.++|...|++..+.
T Consensus 538 ------~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 538 ------DPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred ------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 23 34467777777765 568999999888763
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.1e-14 Score=149.59 Aligned_cols=287 Identities=10% Similarity=-0.012 Sum_probs=232.5
Q ss_pred HhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcC----CCchhHHHHHHHHHHhcCCHHHH
Q 008265 165 LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSA 240 (572)
Q Consensus 165 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a 240 (572)
+.+.|++++|+.+++..... .|.....+..++.+....|++++|+..++.+ |.+...+..+...+.+.|++++|
T Consensus 52 ~~~~g~~~~A~~l~~~~l~~--~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~A 129 (656)
T PRK15174 52 CLRKDETDVGLTLLSDRVLT--AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATV 129 (656)
T ss_pred HHhcCCcchhHHHhHHHHHh--CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHH
Confidence 34589999999999998875 4555667777888888999999999998875 66668889999999999999999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 008265 241 LRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGV 320 (572)
Q Consensus 241 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~ 320 (572)
...++...+.. +.+...+..+...+...|++++|...++.+......+....+........|++++|...++.+.+...
T Consensus 130 i~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~ 208 (656)
T PRK15174 130 ADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFA 208 (656)
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 99999998852 23567888899999999999999999998876643222222232222334899999999999887654
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHH----HHHHHHHHHHCCCCC
Q 008265 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM----ALKVKEDMLSAGVTP 396 (572)
Q Consensus 321 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~g~~p 396 (572)
.++......+..++.+.|++++|...++.+.+. .+.+...+..+...+...|++++ |+..|++..+....
T Consensus 209 ~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~-----~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~- 282 (656)
T PRK15174 209 LERQESAGLAVDTLCAVGKYQEAIQTGESALAR-----GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD- 282 (656)
T ss_pred CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-
Confidence 445555666678889999999999999999873 23456788889999999999986 89999999886332
Q ss_pred chhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 397 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
+...+..+...+.+.|++++|...+++..+.. +.+...+..+..++.+.|++++|...|+++..
T Consensus 283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~ 346 (656)
T PRK15174 283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAR 346 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55788999999999999999999999998864 33566778888999999999999999998865
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.76 E-value=8e-15 Score=139.29 Aligned_cols=379 Identities=14% Similarity=0.130 Sum_probs=291.7
Q ss_pred hhhhcccCCchhhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhH--------------HH------------hHHH
Q 008265 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSK--------------FA------------SMLS 112 (572)
Q Consensus 59 ~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--------------~~------------~~~~ 112 (572)
+++.+...+.. ......|.+..-+.|++.+|++.....-+....-.. +. ..--
T Consensus 37 v~qq~~~t~~~-~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ 115 (966)
T KOG4626|consen 37 VLQQFNKTHEG-SDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQG 115 (966)
T ss_pred HHHHhccCCcc-chhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchH
Confidence 45555555555 334667788888899999999887655443221000 00 0011
Q ss_pred HHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccc
Q 008265 113 LEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELD 192 (572)
Q Consensus 113 ~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 192 (572)
.++++++...+-..|++++|+.+|+.+.+. .|+ ..+.++...+.+...|+.+.|...|.+.++. .|....
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel--~p~------fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~c 185 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIEL--KPK------FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYC 185 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhc--Cch------hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhh
Confidence 456667777888889999999999999886 565 5566666666777789999999999887764 455444
Q ss_pred hHHHHHHHHhcCCChHHHHHhhhcCCC----chhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHH
Q 008265 193 EEFRIVQLCVNKPDVNLAIRYACIVPR----ADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPN-MYICRTIIDVCG 267 (572)
Q Consensus 193 ~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~ 267 (572)
..+.+.......|+.++|...+.+... -...|+.|.-.+-.+|+...|++-|++..+. .|+ ...|-.|-..|.
T Consensus 186 a~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~k 263 (966)
T KOG4626|consen 186 ARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYK 263 (966)
T ss_pred hhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHH
Confidence 555566666678899999887766422 2378999999999999999999999998874 444 457888899999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHhc--CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHH
Q 008265 268 ICGDYMKSRAIYEDLRSQNVTLN-IYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQ 344 (572)
Q Consensus 268 ~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 344 (572)
..+.+++|...|.+.... .|+ ...+..+-..|- |..+.|+..+++..+.... -...|+.|..++-..|+..+|.
T Consensus 264 e~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~ 340 (966)
T KOG4626|consen 264 EARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAV 340 (966)
T ss_pred HHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHH
Confidence 999999999999887765 555 334444433443 7899999999999875332 3678999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCch-hhHHHHHHHHHHcCCHHHHHHHHHH
Q 008265 345 EIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT-ITWSSLINACANAGLVEQAMHLFEE 423 (572)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~ 423 (572)
+.|.+...+ .+......+.|...|...|.+++|..+|....+- .|.- ...+.|...|.+.|++++|+..+++
T Consensus 341 ~cYnkaL~l-----~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Yke 413 (966)
T KOG4626|consen 341 DCYNKALRL-----CPNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKE 413 (966)
T ss_pred HHHHHHHHh-----CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHH
Confidence 999999884 2344568899999999999999999999998875 4443 5688999999999999999999999
Q ss_pred HHHcCCCCC-HHHHHHHHHHHHHhCCHhHHHHHHHHhhhc
Q 008265 424 MLQAGCEPN-SQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (572)
Q Consensus 424 m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 462 (572)
..+- +|+ ...|+.+-..|-..|+.+.|.+.+.+...-
T Consensus 414 alrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~ 451 (966)
T KOG4626|consen 414 ALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI 451 (966)
T ss_pred HHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc
Confidence 9874 676 478999999999999999999999887653
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.4e-13 Score=143.66 Aligned_cols=411 Identities=13% Similarity=0.043 Sum_probs=280.6
Q ss_pred hHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhh
Q 008265 72 DYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFD 151 (572)
Q Consensus 72 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 151 (572)
..-.-.+......|+.++|++++.........+ ...+..+...+.+.|++++|..+|++..+. .|+...
T Consensus 16 ~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~--------a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~- 84 (765)
T PRK10049 16 NQIADWLQIALWAGQDAEVITVYNRYRVHMQLP--------ARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDD- 84 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHH-
Confidence 444556667788999999999999988633222 334556667788999999999999998876 444321
Q ss_pred hhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcC----CCchhHHHHH
Q 008265 152 GSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNF 227 (572)
Q Consensus 152 ~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~~~~~l 227 (572)
....+.. .+.+.|+.++|+..++++.+. .|.+.. +..+..++...|+.++|+..++.+ |.+...+..+
T Consensus 85 --a~~~la~---~l~~~g~~~eA~~~l~~~l~~--~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~l 156 (765)
T PRK10049 85 --YQRGLIL---TLADAGQYDEALVKAKQLVSG--APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEY 156 (765)
T ss_pred --HHHHHHH---HHHHCCCHHHHHHHHHHHHHh--CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 1112222 334589999999999998875 566666 888889999999999999888764 5566677778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcH------HHHHHHHHHHH-----hcCCH---HHHHHHHHHHHhC-CCCCCHH
Q 008265 228 VREFGKKRDLVSALRAYDASKKHLSSPNM------YICRTIIDVCG-----ICGDY---MKSRAIYEDLRSQ-NVTLNIY 292 (572)
Q Consensus 228 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~------~~~~~ll~~~~-----~~g~~---~~a~~~~~~m~~~-g~~p~~~ 292 (572)
...+...|..+.|+..++.... .|+. .....+++... ..+++ ++|++.++.+.+. ...|+..
T Consensus 157 a~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~ 233 (765)
T PRK10049 157 VQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDAT 233 (765)
T ss_pred HHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccc
Confidence 8888899999999998886654 2221 12222333322 22234 7788888888854 2233321
Q ss_pred -HHH-HH---HH--HhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHH
Q 008265 293 -VFN-SL---MN--VNAHDLKFTLEVYKNMQKLGVM-ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364 (572)
Q Consensus 293 -~~~-~l---l~--~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 364 (572)
.+. .. +. ...++.++|+..|+.+.+.+.. |+. .-..+..+|...|++++|+.+|+++.+.. .........
T Consensus 234 ~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~-p~~~~~~~~ 311 (765)
T PRK10049 234 ADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHP-ETIADLSDE 311 (765)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcC-CCCCCCChH
Confidence 111 11 11 1237899999999999887632 332 22225678999999999999999987521 000001134
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHCCC-----------CCc---hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008265 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGV-----------TPN---TITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430 (572)
Q Consensus 365 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-----------~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 430 (572)
....+..++...|++++|.++++.+..... .|+ ...+..+...+...|+.++|+++++++.... +
T Consensus 312 ~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P 390 (765)
T PRK10049 312 ELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-P 390 (765)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 566677788999999999999999887521 122 1244567778889999999999999998763 5
Q ss_pred CCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhcccccccccccCCchHHHHhhhhhccccccCCCCcccCCccchhhhhcC
Q 008265 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFS 510 (572)
Q Consensus 431 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (572)
-+...+..+...+...|++++|++.+++....
T Consensus 391 ~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l------------------------------------------------ 422 (765)
T PRK10049 391 GNQGLRIDYASVLQARGWPRAAENELKKAEVL------------------------------------------------ 422 (765)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh------------------------------------------------
Confidence 56788889999999999999999999987652
Q ss_pred CCCC-HHHHHHHHHHHhh--cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008265 511 FKPT-TTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDAC 558 (572)
Q Consensus 511 ~~p~-~~~~~~ll~a~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 558 (572)
.|| ...+-.....+.+ +.+.|+.+++++.+ ..|+......|-..+
T Consensus 423 -~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 423 -EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDPGVQRLARAR 470 (765)
T ss_pred -CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 454 3333333333333 78999999999988 457665544444433
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.5e-14 Score=127.95 Aligned_cols=320 Identities=14% Similarity=0.206 Sum_probs=239.7
Q ss_pred hhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHH-HHHHHHHHhCCCCCcccchHHHHHHHH
Q 008265 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMF-VGLMEVLEEFRLPVKELDEEFRIVQLC 201 (572)
Q Consensus 123 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a-~~~~~~~~~~~~~~~~~~~~~~ll~~~ 201 (572)
....|.+.++.-+|+.|.+.|+..+......+++++. -+ ...+..-| .+.|-.|...| .++..+|
T Consensus 125 mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~----~~-Ns~~~~~~E~~~Fv~~~~~~--E~S~~sW------- 190 (625)
T KOG4422|consen 125 MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVT----YY-NSSNVPFAEWEEFVGMRNFG--EDSTSSW------- 190 (625)
T ss_pred HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHH----hh-cCCCCcchhHHHHhhccccc--ccccccc-------
Confidence 5678889999999999999987766554444444432 22 12222211 22233343333 3334455
Q ss_pred hcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008265 202 VNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281 (572)
Q Consensus 202 ~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 281 (572)
+.|.+. .-+|+..|+.+.++..+|.++|+--..+.|.+++.+-.....+.+..+||.+|.+-.-. ...+++.+
T Consensus 191 -K~G~vA--dL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~E 263 (625)
T KOG4422|consen 191 -KSGAVA--DLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAE 263 (625)
T ss_pred -ccccHH--HHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHH
Confidence 344444 47788899999999999999999999999999999998888889999999999864433 23789999
Q ss_pred HHhCCCCCCHHHHHHHHHHhc--CChH----HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHH
Q 008265 282 LRSQNVTLNIYVFNSLMNVNA--HDLK----FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVL-AQEIYGEVKHLE 354 (572)
Q Consensus 282 m~~~g~~p~~~~~~~ll~~~~--~~~~----~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~~ 354 (572)
|....+.||..|+|+++.+.+ |+++ .|++++.+|++.|+.|...+|..+|..+++.++..+ +..+..++..--
T Consensus 264 Misqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~l 343 (625)
T KOG4422|consen 264 MISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSL 343 (625)
T ss_pred HHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhh
Confidence 999999999999999999855 6544 468899999999999999999999999998888755 444444443211
Q ss_pred HhCC-C----CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCC----CCCc---hhhHHHHHHHHHHcCCHHHHHHHHH
Q 008265 355 AKGV-L----KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG----VTPN---TITWSSLINACANAGLVEQAMHLFE 422 (572)
Q Consensus 355 ~~~~-~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~p~---~~~~~~li~~~~~~g~~~~a~~~~~ 422 (572)
.|. + +.|..-|...|..|.+..+.+-|.++..-+.... +.|+ ...|..+....|+....+.....++
T Consensus 344 -tGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~ 422 (625)
T KOG4422|consen 344 -TGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYE 422 (625)
T ss_pred -ccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 121 2 2345567778888888888888888776665321 2222 2346677788888899999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhccc
Q 008265 423 EMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKT 464 (572)
Q Consensus 423 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 464 (572)
.|.-.-+-|+..+...+++|..-.|.++-.-++|.+++..|-
T Consensus 423 ~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~gh 464 (625)
T KOG4422|consen 423 DLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGH 464 (625)
T ss_pred HhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhh
Confidence 999887889999999999999999999999999999987763
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-13 Score=144.76 Aligned_cols=390 Identities=12% Similarity=-0.010 Sum_probs=262.7
Q ss_pred hhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHH
Q 008265 118 SGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRI 197 (572)
Q Consensus 118 ~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 197 (572)
.....+.+.|++++|+..|++..+. .|+.. .+.-+.. .+.+.|++++|+..++..++. .|+....|..+
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~----~~~n~a~---~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~ 200 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIEC--KPDPV----YYSNRAA---CHNALGDWEKVVEDTTAALEL--DPDYSKALNRR 200 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--CCchH----HHHHHHH---HHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHH
Confidence 3444578899999999999998875 56532 3322322 334579999999999998874 57777889999
Q ss_pred HHHHhcCCChHHHHHhhhcCC---C-chhHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----------------------
Q 008265 198 VQLCVNKPDVNLAIRYACIVP---R-ADILFCNFVREFGKKRDLVSALRAYDASKKH----------------------- 250 (572)
Q Consensus 198 l~~~~~~g~~~~a~~~~~~~~---~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----------------------- 250 (572)
..+|...|++++|+..|..+. . +......++..+........+...++.-...
T Consensus 201 a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (615)
T TIGR00990 201 ANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGL 280 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhh
Confidence 999999999999988765431 1 1111111221111111111111111110000
Q ss_pred ----CCCCcH-HHHHHHHHH---HHhcCCHHHHHHHHHHHHhCC-CCCCH-HHHHHHHHH--hcCChHHHHHHHHHHHHc
Q 008265 251 ----LSSPNM-YICRTIIDV---CGICGDYMKSRAIYEDLRSQN-VTLNI-YVFNSLMNV--NAHDLKFTLEVYKNMQKL 318 (572)
Q Consensus 251 ----~~~~~~-~~~~~ll~~---~~~~g~~~~a~~~~~~m~~~g-~~p~~-~~~~~ll~~--~~~~~~~a~~~~~~m~~~ 318 (572)
...+.. ..+..+... ....+++++|.+.|+...+.+ ..|+. ..|..+-.. ..|++++|+..+++..+.
T Consensus 281 ~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l 360 (615)
T TIGR00990 281 EDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL 360 (615)
T ss_pred hcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 000000 000000000 122368999999999998764 33433 334444333 348999999999999875
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCch
Q 008265 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398 (572)
Q Consensus 319 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 398 (572)
... +...|..+...+...|++++|...|+++.+. -+.+..+|..+...+...|++++|+..|++..+.... +.
T Consensus 361 ~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~ 433 (615)
T TIGR00990 361 DPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKL-----NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FI 433 (615)
T ss_pred CCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CH
Confidence 422 3567888888999999999999999999874 1345678999999999999999999999999887422 45
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhcccccccccccCCchHH
Q 008265 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDR 478 (572)
Q Consensus 399 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~ 478 (572)
..+..+...+.+.|++++|...|++..+.. +.+...++.+...+...|++++|.+.|++........
T Consensus 434 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~------------ 500 (615)
T TIGR00990 434 FSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKET------------ 500 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc------------
Confidence 677788889999999999999999998753 4457889999999999999999999999876532110
Q ss_pred HHhhhhhccccccCCCCcccCCccchhhhhcCCCCCHH-HHHHHHHHHh--hcHHHHHHHHHHHHhCCCCCCH-HHHHHH
Q 008265 479 ISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTT-TYNILMKACC--TDYYRVKALMNEMRTVGLSPNH-ISWTIL 554 (572)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~ll~a~~--~~~~~a~~~~~~m~~~g~~p~~-~~~~~l 554 (572)
.+...+.. .++..+..+. ++.++|..++++.... .|+. ..+..+
T Consensus 501 ------------------------------~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~l 548 (615)
T TIGR00990 501 ------------------------------KPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII--DPECDIAVATM 548 (615)
T ss_pred ------------------------------ccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHH
Confidence 00111111 1222222222 3678999999998774 4654 578889
Q ss_pred HHHHHccCCccccccc
Q 008265 555 IDACGGSGNVEGALQC 570 (572)
Q Consensus 555 ~~~~~~~g~~~~a~~~ 570 (572)
...+...|++++|++.
T Consensus 549 a~~~~~~g~~~eAi~~ 564 (615)
T TIGR00990 549 AQLLLQQGDVDEALKL 564 (615)
T ss_pred HHHHHHccCHHHHHHH
Confidence 9999999999999764
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.2e-13 Score=145.09 Aligned_cols=377 Identities=11% Similarity=-0.045 Sum_probs=271.8
Q ss_pred CCchhhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCC
Q 008265 66 DLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVA 145 (572)
Q Consensus 66 ~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~ 145 (572)
.|.+ ...+..+...+...|++++|.++|+..++..+ +. ......+...+...|++++|+..+++..+. .
T Consensus 45 ~~~~-a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P--~~------~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--~ 113 (765)
T PRK10049 45 MQLP-ARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP--QN------DDYQRGLILTLADAGQYDEALVKAKQLVSG--A 113 (765)
T ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--C
Confidence 4444 56789999999999999999999999988743 32 222345666788999999999999999887 5
Q ss_pred CcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchh---
Q 008265 146 PLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADI--- 222 (572)
Q Consensus 146 p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--- 222 (572)
|+... +..+.. .+...|+.++|+..++++.+. .|.+...+..+..++...+..+.|++.++..+..+.
T Consensus 114 P~~~~----~~~la~---~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~ 184 (765)
T PRK10049 114 PDKAN----LLALAY---VYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKR 184 (765)
T ss_pred CCCHH----HHHHHH---HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHH
Confidence 65431 222222 234579999999999999875 567777777888889899999999999987765321
Q ss_pred -----HHHHHHHHHH-----hcCCH---HHHHHHHHHHHhc-CCCCcHH-HH----HHHHHHHHhcCCHHHHHHHHHHHH
Q 008265 223 -----LFCNFVREFG-----KKRDL---VSALRAYDASKKH-LSSPNMY-IC----RTIIDVCGICGDYMKSRAIYEDLR 283 (572)
Q Consensus 223 -----~~~~li~~~~-----~~g~~---~~a~~~~~~m~~~-~~~~~~~-~~----~~ll~~~~~~g~~~~a~~~~~~m~ 283 (572)
....++.... ..+++ ++|++.++.+.+. ...|+.. .+ ...+..+...|++++|.+.|+.+.
T Consensus 185 ~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll 264 (765)
T PRK10049 185 DLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLK 264 (765)
T ss_pred HHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 1222333332 22234 7788888888754 2223221 11 111445567799999999999999
Q ss_pred hCCCC-CC-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh--
Q 008265 284 SQNVT-LN-IYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMA---DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK-- 356 (572)
Q Consensus 284 ~~g~~-p~-~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-- 356 (572)
+.+.. |+ ...+...+....+++++|+..|+++.+..... .......+..++.+.|++++|.++++.+......
T Consensus 265 ~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~ 344 (765)
T PRK10049 265 AEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFL 344 (765)
T ss_pred ccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceE
Confidence 87532 33 33444444456689999999999987653221 1345666777889999999999999999863100
Q ss_pred ---C--CCCCC---HHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 008265 357 ---G--VLKLD---VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428 (572)
Q Consensus 357 ---~--~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 428 (572)
+ ...|+ ...+..+...+...|+.++|+++++++..... -+...+..+...+...|+.++|++.+++..+..
T Consensus 345 ~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P-~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~ 423 (765)
T PRK10049 345 RLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAP-GNQGLRIDYASVLQARGWPRAAENELKKAEVLE 423 (765)
T ss_pred eecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence 0 00123 23456677888899999999999999987632 356788899999999999999999999998863
Q ss_pred CCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhccc
Q 008265 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKT 464 (572)
Q Consensus 429 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 464 (572)
+-+...+......+.+.|++++|..+++++.+..+
T Consensus 424 -Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 424 -PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred -CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 33466777777789999999999999999987543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-11 Score=129.46 Aligned_cols=423 Identities=10% Similarity=0.041 Sum_probs=283.9
Q ss_pred HHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhh
Q 008265 73 YYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDG 152 (572)
Q Consensus 73 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 152 (572)
.|.. +-...+.|+++.|+..|++..+..+. . ......++..+...|+.++|+..+++... |+..
T Consensus 37 ~y~~-aii~~r~Gd~~~Al~~L~qaL~~~P~--~------~~av~dll~l~~~~G~~~~A~~~~eka~~----p~n~--- 100 (822)
T PRK14574 37 QYDS-LIIRARAGDTAPVLDYLQEESKAGPL--Q------SGQVDDWLQIAGWAGRDQEVIDVYERYQS----SMNI--- 100 (822)
T ss_pred HHHH-HHHHHhCCCHHHHHHHHHHHHhhCcc--c------hhhHHHHHHHHHHcCCcHHHHHHHHHhcc----CCCC---
Confidence 3443 34577899999999999999987544 1 00111455566778999999999999873 3222
Q ss_pred hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCc---hhHHHHHHH
Q 008265 153 SGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRA---DILFCNFVR 229 (572)
Q Consensus 153 ~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~li~ 229 (572)
.+..+......+...|++++|+++|+++.+. .|.+...+..++..+...++.++|++.+..+.+. ...+-.++.
T Consensus 101 -~~~~llalA~ly~~~gdyd~Aiely~kaL~~--dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~lay 177 (822)
T PRK14574 101 -SSRGLASAARAYRNEKRWDQALALWQSSLKK--DPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSY 177 (822)
T ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHH
Confidence 2222222222334579999999999999875 4666677778889999999999999998886433 234444455
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH------HHHHH-Hh-
Q 008265 230 EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVF------NSLMN-VN- 301 (572)
Q Consensus 230 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~------~~ll~-~~- 301 (572)
.+...++..+|++.++++.+.. +-+...+..++.++.+.|-...|+++..+-... +.+....+ ...++ +.
T Consensus 178 L~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~ 255 (822)
T PRK14574 178 LNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVL 255 (822)
T ss_pred HHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhccc
Confidence 5555667767999999999874 235777888889999999999998777654322 11111111 11111 10
Q ss_pred -c----CC---hHHHHHHHHHHHHc-CCCCCH-H----HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHH
Q 008265 302 -A----HD---LKFTLEVYKNMQKL-GVMADM-A----SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367 (572)
Q Consensus 302 -~----~~---~~~a~~~~~~m~~~-~~~~~~-~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 367 (572)
. ++ .+.|+.-++.+... +..|.. . ...-.+-++...|+..++++.|+.+.. .+ .+...++--
T Consensus 256 ~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~---~~-~~~P~y~~~ 331 (822)
T PRK14574 256 PTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEA---EG-YKMPDYARR 331 (822)
T ss_pred ccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh---cC-CCCCHHHHH
Confidence 0 11 34456666665542 222321 1 222345677888999999999998885 33 343456778
Q ss_pred HHHHHHHccccHHHHHHHHHHHHHCC-----CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----------CC
Q 008265 368 TIVKVFADAKWWQMALKVKEDMLSAG-----VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC-----------EP 431 (572)
Q Consensus 368 ~li~~~~~~g~~~~a~~~~~~m~~~g-----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-----------~p 431 (572)
++.++|...+++++|+.+++.+.... ..++......|.-+|...+++++|..+++.+.+... .|
T Consensus 332 a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~p 411 (822)
T PRK14574 332 WAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEP 411 (822)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCC
Confidence 88999999999999999999986643 122334457788899999999999999999987311 12
Q ss_pred C--H-HHHHHHHHHHHHhCCHhHHHHHHHHhhhcccccccccccCCchHHHHhhhhhccccccCCCCcccCCccchhhhh
Q 008265 432 N--S-QCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKR 508 (572)
Q Consensus 432 ~--~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (572)
| - ..+..++..+...|++.+|++.++++....
T Consensus 412 n~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a--------------------------------------------- 446 (822)
T PRK14574 412 NDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA--------------------------------------------- 446 (822)
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------------------------------------
Confidence 2 2 234456667888999999999999886532
Q ss_pred cCCCCCHHHHHHHHHHHhh--cHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCCccccccc
Q 008265 509 FSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPN-HISWTILIDACGGSGNVEGALQC 570 (572)
Q Consensus 509 ~~~~p~~~~~~~ll~a~~~--~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~ 570 (572)
.-|......+-+.+.. ...+|+..++.... +.|+ ..+......++...|+|++|.++
T Consensus 447 ---P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~al~l~e~~~A~~~ 506 (822)
T PRK14574 447 ---PANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQAETAMALQEWHQMELL 506 (822)
T ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHHHHhhhhHHHHHHH
Confidence 2255555555555554 46788888866665 3565 45666777778888888887543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.5e-11 Score=129.80 Aligned_cols=171 Identities=6% Similarity=-0.085 Sum_probs=99.8
Q ss_pred hhhhcccCCchhhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHH
Q 008265 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (572)
Q Consensus 59 ~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 138 (572)
+-+.+..+|+. ..++..+...|...|+.++|+..+++..+..+. ... .+ ..+ ...+++++|..++++
T Consensus 67 l~~Al~~dP~n-~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~--n~~------~~-~~L---a~i~~~~kA~~~ye~ 133 (987)
T PRK09782 67 FEYIHQQVPDN-IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPG--DAR------LE-RSL---AAIPVEVKSVTTVEE 133 (987)
T ss_pred HHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc--cHH------HH-HHH---HHhccChhHHHHHHH
Confidence 55566677887 888899999999999999999999999987442 111 11 111 122888888888888
Q ss_pred hhhcCCCCcchhhhh------------------------------------hhHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 008265 139 LNELGVAPLELFDGS------------------------------------GFKLLKNECQRLLDSGEVEMFVGLMEVLE 182 (572)
Q Consensus 139 m~~~~~~p~~~~~~~------------------------------------~~~~l~~~~~~~~~~g~~~~a~~~~~~~~ 182 (572)
+... .|+..-... .+... ....+.+.|++++|++++.++.
T Consensus 134 l~~~--~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~--~~rlY~~l~dw~~Ai~lL~~L~ 209 (987)
T PRK09782 134 LLAQ--QKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTD--LLQRAIYLKQWSQADTLYNEAR 209 (987)
T ss_pred HHHh--CCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHH--HHHHHHHHhCHHHHHHHHHHHH
Confidence 8776 333210000 11111 0111223466666666666666
Q ss_pred hCCCCCcccchHHHHHHHHhc-CCChHHHHHhhhcCC-CchhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008265 183 EFRLPVKELDEEFRIVQLCVN-KPDVNLAIRYACIVP-RADILFCNFVREFGKKRDLVSALRAYDASKK 249 (572)
Q Consensus 183 ~~~~~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 249 (572)
+.+ |.+......|..+|.. .++ +++..+++... .+...+..+...|.+.|+.++|.+++.++..
T Consensus 210 k~~--pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~ 275 (987)
T PRK09782 210 QQN--TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKP 275 (987)
T ss_pred hcC--CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcc
Confidence 553 2222334445555555 244 55555544332 2345566666777777777777777766544
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.6e-11 Score=109.95 Aligned_cols=342 Identities=12% Similarity=0.111 Sum_probs=238.4
Q ss_pred HHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhh
Q 008265 73 YYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDG 152 (572)
Q Consensus 73 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 152 (572)
+=|.|+ .+...|.+.++.-+|+.|.+.|.+.+.-- ...+..++.-|....-.-.-++.|-.|...|-....
T Consensus 118 ~E~nL~-kmIS~~EvKDs~ilY~~m~~e~~~vS~kv----q~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~---- 188 (625)
T KOG4422|consen 118 TENNLL-KMISSREVKDSCILYERMRSENVDVSEKV----QLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTS---- 188 (625)
T ss_pred chhHHH-HHHhhcccchhHHHHHHHHhcCCCCCHHH----HHHHHHHHHhhcCCCCcchhHHHHhhcccccccccc----
Confidence 334443 35567899999999999999987543211 112223333333333333334556666555433211
Q ss_pred hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCC-----chhHHHHH
Q 008265 153 SGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR-----ADILFCNF 227 (572)
Q Consensus 153 ~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~l 227 (572)
+ -+.|.+.+ -+|+ +.|.+..++..+|.+.++--..+.|.++++.... ...+||.+
T Consensus 189 -s-----------WK~G~vAd--L~~E------~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~l 248 (625)
T KOG4422|consen 189 -S-----------WKSGAVAD--LLFE------TLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGL 248 (625)
T ss_pred -c-----------cccccHHH--HHHh------hcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhh
Confidence 1 12354443 3333 2467778899999999999889999988876422 23677877
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHhcC
Q 008265 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMK----SRAIYEDLRSQNVTLNIYVFNSLMNVNAH 303 (572)
Q Consensus 228 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~----a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 303 (572)
|.+-.- ....+++.+|....+.||..|+|+++.+..+.|+++. |++++.+|++-|+.|...+|..+|...++
T Consensus 249 I~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~r 324 (625)
T KOG4422|consen 249 IGASSY----SVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKR 324 (625)
T ss_pred hhHHHh----hccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcc
Confidence 765433 3337889999999999999999999999999998764 67888999999999999999999998774
Q ss_pred ChH---HHHHHHHHHHHc--C--C---CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCH---HHHHHH
Q 008265 304 DLK---FTLEVYKNMQKL--G--V---MA-DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV---FTYSTI 369 (572)
Q Consensus 304 ~~~---~a~~~~~~m~~~--~--~---~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---~~~~~l 369 (572)
..+ .+..++.++... | . .| |..-|...+..|.+..+.+.|.++...+..-.....+.|+. .-|..+
T Consensus 325 e~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~ 404 (625)
T KOG4422|consen 325 ESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKF 404 (625)
T ss_pred cCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHH
Confidence 333 255555555432 2 2 22 44567788899999999999999888776421111133432 246677
Q ss_pred HHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Q 008265 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447 (572)
Q Consensus 370 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 447 (572)
....|.....+.-...++.|.-+-.-|+..+...++++..-.|.++-.-+++..+...|..-+...-.-++.-+++..
T Consensus 405 ~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k 482 (625)
T KOG4422|consen 405 FDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK 482 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC
Confidence 788888999999999999999888889999999999999999999999999999998875555444444444444433
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.2e-10 Score=121.43 Aligned_cols=354 Identities=12% Similarity=0.058 Sum_probs=235.2
Q ss_pred HHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhh
Q 008265 74 YADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGS 153 (572)
Q Consensus 74 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 153 (572)
...++..+.+.++++.+.++.. ..|.... ...-.......+...++...+..|.+....-....+..
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~ 382 (987)
T PRK09782 316 VGATLPVLLKEGQYDAAQKLLA------TLPANEM-------LEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQL 382 (987)
T ss_pred HHHHHHHHHhccHHHHHHHHhc------CCCcchH-------HHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHH
Confidence 3344677778888886665532 1222111 10011122344566666666766766511111111222
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCC-CCcccchHHHHHHHHhcCCC---hHHHHHh----------------
Q 008265 154 GFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRL-PVKELDEEFRIVQLCVNKPD---VNLAIRY---------------- 213 (572)
Q Consensus 154 ~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~---~~~a~~~---------------- 213 (572)
++ -..+.|+.++|..+|+......- ..-+......++..|.+.+. ...+..+
T Consensus 383 ~~--------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 454 (987)
T PRK09782 383 TW--------QLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQL 454 (987)
T ss_pred HH--------HHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhh
Confidence 22 23347888888888887766311 10112234466777776655 2222222
Q ss_pred -------------hhcCCC--chhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 008265 214 -------------ACIVPR--ADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI 278 (572)
Q Consensus 214 -------------~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 278 (572)
+...|. ....|..+..++.. ++.++|...|...... .|+......+...+...|++++|...
T Consensus 455 ~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~ 531 (987)
T PRK09782 455 PGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAA 531 (987)
T ss_pred hhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 222344 55677778777776 7888899988877664 35654444445555789999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHH--HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q 008265 279 YEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK 356 (572)
Q Consensus 279 ~~~m~~~g~~p~~~~~~~ll~--~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 356 (572)
|+++... .|+...+..+.. ...|+.++|...++...+.+.. +...+..+.......|++++|...+++..+
T Consensus 532 ~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---- 604 (987)
T PRK09782 532 WQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLN---- 604 (987)
T ss_pred HHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----
Confidence 9998665 333333333322 2348999999999999876522 333333444455566999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 008265 357 GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436 (572)
Q Consensus 357 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 436 (572)
..|+...|..+...+.+.|++++|+..+++....... +...++.+..++...|+.++|...+++..+.. +-+...+
T Consensus 605 --l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~ 680 (987)
T PRK09782 605 --IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALI 680 (987)
T ss_pred --hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 4678889999999999999999999999999887432 45677888889999999999999999998863 4467788
Q ss_pred HHHHHHHHHhCCHhHHHHHHHHhhhc
Q 008265 437 NILLQACVEACQFDRAFRLFRSWTLS 462 (572)
Q Consensus 437 ~~li~~~~~~g~~~~A~~~~~~m~~~ 462 (572)
..+..++...|++++|...|++..+.
T Consensus 681 ~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 681 RQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 89999999999999999999988754
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.7e-10 Score=119.52 Aligned_cols=365 Identities=11% Similarity=-0.002 Sum_probs=237.8
Q ss_pred HHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHH
Q 008265 78 ASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKL 157 (572)
Q Consensus 78 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~ 157 (572)
...+...|++++|+++|+++.+..++ . ...+..++..+...++.++|++.++++... .|+.. .+..
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP~--n------~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~----~~l~ 174 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDPT--N------PDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQ----NYMT 174 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC--C------HHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchH----HHHH
Confidence 45666667777777777777766432 1 122234455666777777777777777665 34322 1111
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCc--hhH--------HHHH
Q 008265 158 LKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRA--DIL--------FCNF 227 (572)
Q Consensus 158 l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~--------~~~l 227 (572)
+.. .. ...++..+|++.++++.+. .|.+...+..+..+..+.|-...|+++...-|.- ... ....
T Consensus 175 lay--L~-~~~~~~~~AL~~~ekll~~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~ 249 (822)
T PRK14574 175 LSY--LN-RATDRNYDALQASSEAVRL--APTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQ 249 (822)
T ss_pred HHH--HH-HhcchHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHH
Confidence 111 11 1134554577777777764 4566666667777777777777777776654421 100 1111
Q ss_pred HHHH---H--hcC---CHHHHHHHHHHHHhc-CCCCcH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 008265 228 VREF---G--KKR---DLVSALRAYDASKKH-LSSPNM-----YICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYV 293 (572)
Q Consensus 228 i~~~---~--~~g---~~~~a~~~~~~m~~~-~~~~~~-----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 293 (572)
++.- . ... -.+.|+.-++.+... +..|.. ....-.+.++...|++.++.+.|+.|...|.+.....
T Consensus 250 vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~ 329 (822)
T PRK14574 250 VRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYA 329 (822)
T ss_pred HhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHH
Confidence 1111 0 111 233455555555442 222322 2223456677888999999999999998886655667
Q ss_pred HHHHHHHhc--CChHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh---------C
Q 008265 294 FNSLMNVNA--HDLKFTLEVYKNMQKLG-----VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK---------G 357 (572)
Q Consensus 294 ~~~ll~~~~--~~~~~a~~~~~~m~~~~-----~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---------~ 357 (572)
-..+..+|. +.+++|+.++..+.... ..++......|.-+|...+++++|..+++.+.+.... .
T Consensus 330 ~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 409 (822)
T PRK14574 330 RRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGK 409 (822)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCC
Confidence 777777765 78999999999986643 1234444578889999999999999999999862110 0
Q ss_pred CCCCCHH-HHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 008265 358 VLKLDVF-TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436 (572)
Q Consensus 358 ~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 436 (572)
...||-. .+..++..+.-.|++.+|++.++++..... -|......+...+...|...+|++.++...... +-+..+.
T Consensus 410 ~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP-~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~ 487 (822)
T PRK14574 410 EPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAP-ANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILE 487 (822)
T ss_pred CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHH
Confidence 1123333 344566778889999999999999977643 377888999999999999999999997776652 4456777
Q ss_pred HHHHHHHHHhCCHhHHHHHHHHhhhcc
Q 008265 437 NILLQACVEACQFDRAFRLFRSWTLSK 463 (572)
Q Consensus 437 ~~li~~~~~~g~~~~A~~~~~~m~~~~ 463 (572)
.....++...+++++|..+.+.+....
T Consensus 488 ~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 488 RAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 788888899999999999988776543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.2e-10 Score=115.45 Aligned_cols=369 Identities=13% Similarity=0.062 Sum_probs=232.2
Q ss_pred hhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchh
Q 008265 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (572)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 150 (572)
+...+.|..-|.-.|++..++.+...+..... ...+..+.+..+.++|-..|++++|...|.+..+. .|+.++
T Consensus 270 P~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~-----~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~ 342 (1018)
T KOG2002|consen 270 PVALNHLANHFYFKKDYERVWHLAEHAIKNTE-----NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFV 342 (1018)
T ss_pred cHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCcc
Confidence 67778888888888999999999998887532 23334666778889999999999999999877665 444421
Q ss_pred hhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCC----ChHHHHHhhhc----CCCchh
Q 008265 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKP----DVNLAIRYACI----VPRADI 222 (572)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g----~~~~a~~~~~~----~~~~~~ 222 (572)
.+. + -+- ..+.+.|+++.+...|+.+... .|++..+...|...|+..+ ..+.|..+... .|.+..
T Consensus 343 l~~-~-Glg---Qm~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~ 415 (1018)
T KOG2002|consen 343 LPL-V-GLG---QMYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSE 415 (1018)
T ss_pred ccc-c-chh---HHHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHH
Confidence 111 1 111 1224489999999999999875 5677777777777777775 44555555444 344556
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH----HhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHH---
Q 008265 223 LFCNFVREFGKKRDLVSALRAYDAS----KKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ---NVTLNIY--- 292 (572)
Q Consensus 223 ~~~~li~~~~~~g~~~~a~~~~~~m----~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~--- 292 (572)
.|-.+...+-...-+.. +.+|... ...+-.+.....|.+...+...|++++|...|...... ...+|..
T Consensus 416 a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~ 494 (1018)
T KOG2002|consen 416 AWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKST 494 (1018)
T ss_pred HHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccc
Confidence 66666666655444443 6666543 34555577888999999999999999999999888755 2233331
Q ss_pred ----HHHHHHHH-hcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHH
Q 008265 293 ----VFNSLMNV-NAHDLKFTLEVYKNMQKLGVMAD-MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY 366 (572)
Q Consensus 293 ----~~~~ll~~-~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 366 (572)
-||.-..- ..++.+.|.+.|..+.+.. |. ...|--+..+....+...+|...++...... ..+...+
T Consensus 495 ~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-----~~np~ar 567 (1018)
T KOG2002|consen 495 NLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-----SSNPNAR 567 (1018)
T ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-----cCCcHHH
Confidence 23322111 2357788888888887653 22 2223333323333456667777777766531 3344455
Q ss_pred HHHHHHHHccccHHHHHHHHHHHHHCC-CCCchhhHHHHHHHHHH------------cCCHHHHHHHHHHHHHcCCCCCH
Q 008265 367 STIVKVFADAKWWQMALKVKEDMLSAG-VTPNTITWSSLINACAN------------AGLVEQAMHLFEEMLQAGCEPNS 433 (572)
Q Consensus 367 ~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~------------~g~~~~a~~~~~~m~~~~~~p~~ 433 (572)
+.+...+.+...+..|.+-|....+.- ..+|..+.-+|...|.+ .+..++|+++|.+..+.. +-|.
T Consensus 568 sl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~ 646 (1018)
T KOG2002|consen 568 SLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNM 646 (1018)
T ss_pred HHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchh
Confidence 555556666666666666555544331 12354444444443332 234566777777666553 3355
Q ss_pred HHHHHHHHHHHHhCCHhHHHHHHHHhhhc
Q 008265 434 QCCNILLQACVEACQFDRAFRLFRSWTLS 462 (572)
Q Consensus 434 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 462 (572)
..-|-+.-.++..|++..|..+|.++.+.
T Consensus 647 yAANGIgiVLA~kg~~~~A~dIFsqVrEa 675 (1018)
T KOG2002|consen 647 YAANGIGIVLAEKGRFSEARDIFSQVREA 675 (1018)
T ss_pred hhccchhhhhhhccCchHHHHHHHHHHHH
Confidence 55566666667777777777777776654
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.7e-11 Score=117.41 Aligned_cols=283 Identities=10% Similarity=-0.056 Sum_probs=209.4
Q ss_pred hhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcC----CCchh-HHHHHHHHHHhcCCHHHHH
Q 008265 167 DSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADI-LFCNFVREFGKKRDLVSAL 241 (572)
Q Consensus 167 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~-~~~~li~~~~~~g~~~~a~ 241 (572)
..|+++.|.+.+....+.. |.....+-....++.+.|+.+.|.+++... |.... +.-+....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 3799999999998876643 333344555567788899999999998874 44432 3444688899999999999
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCC-----hHHHHHHHHHHH
Q 008265 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD-----LKFTLEVYKNMQ 316 (572)
Q Consensus 242 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-----~~~a~~~~~~m~ 316 (572)
+.++.+.+..+ -+...+..+...+.+.|++++|.+++..+.+.++.+..........++.+. .+++.+.+..+.
T Consensus 174 ~~l~~l~~~~P-~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMAP-RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 99999998753 356788899999999999999999999999987543332222222222221 222233444444
Q ss_pred HcCC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHccccHHHHHHHHHHHH
Q 008265 317 KLGV---MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT---YSTIVKVFADAKWWQMALKVKEDML 390 (572)
Q Consensus 317 ~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~m~ 390 (572)
+... +.+...+..+...+...|+.++|.+++++..+. .||... ...........++.+.+++.++...
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~------~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~l 326 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK------LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQA 326 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh------CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHH
Confidence 4322 137788889999999999999999999999873 344432 1222223344578899999998887
Q ss_pred HCCCCCch---hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhh
Q 008265 391 SAGVTPNT---ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (572)
Q Consensus 391 ~~g~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (572)
+. .|+. ....++.+.|.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++-.
T Consensus 327 k~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 327 KN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred Hh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 76 4444 45668899999999999999999965544458999999999999999999999999998754
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.4e-09 Score=105.54 Aligned_cols=368 Identities=13% Similarity=0.074 Sum_probs=260.5
Q ss_pred hhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchh
Q 008265 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (572)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 150 (572)
....-.....+.-.|+.++|.+++.++++..+. ....|..+...|-+.|+.+++...+-..-. +.|+..
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~--------~~~ay~tL~~IyEqrGd~eK~l~~~llAAH--L~p~d~- 207 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPR--------NPIAYYTLGEIYEQRGDIEKALNFWLLAAH--LNPKDY- 207 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcc--------chhhHHHHHHHHHHcccHHHHHHHHHHHHh--cCCCCh-
Confidence 333333444444459999999999999988543 144466667778899999998877654433 455532
Q ss_pred hhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhc----CCCch-----
Q 008265 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRAD----- 221 (572)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~----~~~~~----- 221 (572)
..+...+....+.|++++|.-+|.+..+. .|.+....-.-...|-+.|+...|...|.+ +|+.+
T Consensus 208 -----e~W~~ladls~~~~~i~qA~~cy~rAI~~--~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~ 280 (895)
T KOG2076|consen 208 -----ELWKRLADLSEQLGNINQARYCYSRAIQA--NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIE 280 (895)
T ss_pred -----HHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHH
Confidence 33333333445689999999999998875 455555555567788899999999776555 45433
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH------
Q 008265 222 ILFCNFVREFGKKRDLVSALRAYDASKKH-LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVF------ 294 (572)
Q Consensus 222 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~------ 294 (572)
...-..++.+...++.+.|.+.++..... +-..+...++.++..|.+...++.|......+......+|..-|
T Consensus 281 d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~ 360 (895)
T KOG2076|consen 281 DLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERR 360 (895)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhc
Confidence 33444678888889999999999877653 33445667889999999999999999999888773333332222
Q ss_pred ---------------------HHHHHHh-cCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008265 295 ---------------------NSLMNVN-AHDLKFTLEVYKNMQKLG--VMADMASYNILLKACCLAGNTVLAQEIYGEV 350 (572)
Q Consensus 295 ---------------------~~ll~~~-~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 350 (572)
..++... .+..+....+...+.+.. +.-+...|.-+..+|...|++.+|..+|..+
T Consensus 361 ~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i 440 (895)
T KOG2076|consen 361 REEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPI 440 (895)
T ss_pred cccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 2222211 133444444555555555 3345667889999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCc-hhhHHHHHHHHHHcCCHHHHHHHHHHHH----
Q 008265 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN-TITWSSLINACANAGLVEQAMHLFEEML---- 425 (572)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~---- 425 (572)
.... ..-+...|--+..+|...|..+.|.+.+...... .|+ ...-.+|-..+.+.|+.++|.+.+..+.
T Consensus 441 ~~~~----~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~ 514 (895)
T KOG2076|consen 441 TNRE----GYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDG 514 (895)
T ss_pred hcCc----cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCc
Confidence 8632 2335779999999999999999999999999876 343 3444566777889999999999999954
Q ss_pred ----HcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhc
Q 008265 426 ----QAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (572)
Q Consensus 426 ----~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 462 (572)
..++.|+........+.+.+.|+.++=..+-..|...
T Consensus 515 ~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~ 555 (895)
T KOG2076|consen 515 RNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDD 555 (895)
T ss_pred cchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3345666666667777888899988766666666543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=4e-10 Score=103.88 Aligned_cols=381 Identities=15% Similarity=0.163 Sum_probs=218.9
Q ss_pred HHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCccc-
Q 008265 113 LEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKEL- 191 (572)
Q Consensus 113 ~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~- 191 (572)
..+++++--.+.+.|+++.|+..|++..+. .||.. ..+++.+-+++. |+.+...+.|.+|......+++.
T Consensus 276 ikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~---a~~nl~i~~f~i----~d~ekmkeaf~kli~ip~~~dddk 346 (840)
T KOG2003|consen 276 IKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFI---AALNLIICAFAI----GDAEKMKEAFQKLIDIPGEIDDDK 346 (840)
T ss_pred HHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHH---hhhhhhhhheec----CcHHHHHHHHHHHhcCCCCCCccc
Confidence 445556666778888888888888877765 46532 355555443333 77777777788877643222211
Q ss_pred ------chHHHHHHHHhcCC--------ChHHHHH-------hhhcCCCch----hHH----------H--------HHH
Q 008265 192 ------DEEFRIVQLCVNKP--------DVNLAIR-------YACIVPRAD----ILF----------C--------NFV 228 (572)
Q Consensus 192 ------~~~~~ll~~~~~~g--------~~~~a~~-------~~~~~~~~~----~~~----------~--------~li 228 (572)
.....|+.-..++. +-..|.+ +..-+...+ .-| . .-.
T Consensus 347 yi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka 426 (840)
T KOG2003|consen 347 YIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKA 426 (840)
T ss_pred ccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHH
Confidence 00112222111111 1111111 111110000 000 0 012
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHH--HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH----Hhc
Q 008265 229 REFGKKRDLVSALRAYDASKKHLSSPNMYICRTI--IDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN----VNA 302 (572)
Q Consensus 229 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l--l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~----~~~ 302 (572)
-.+.+.|+++.|.+++.-+.+..-+.-...-+.| ++.+.--.++..|.+.-+..... |.+.-.++.. +++
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~----dryn~~a~~nkgn~~f~ 502 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI----DRYNAAALTNKGNIAFA 502 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc----cccCHHHhhcCCceeee
Confidence 3456677777777777766554222111122222 22222223455555544444322 1111111211 122
Q ss_pred -CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHH
Q 008265 303 -HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381 (572)
Q Consensus 303 -~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 381 (572)
|++++|.+.+++.....-......|+. --.+-..|++++|...|-.+... +..+..+...+...|....+...
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~i-----l~nn~evl~qianiye~led~aq 576 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAI-----LLNNAEVLVQIANIYELLEDPAQ 576 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH-----HHhhHHHHHHHHHHHHHhhCHHH
Confidence 678888888887776432222222322 22455678888888877766543 34566677777777877788888
Q ss_pred HHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 382 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
|++++-+.... ++-|....+.|...|-+.|+..+|.+++.+--+. ++-+..|...|..-|....-+++|+.+|++..-
T Consensus 577 aie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal 654 (840)
T KOG2003|consen 577 AIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL 654 (840)
T ss_pred HHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 88877665543 3346677777888888888888887776654433 455777777777777777778888888876431
Q ss_pred cccccccccccCCchHHHHhhhhhccccccCCCCcccCCccchhhhhcCCCCCHHHHHHHHHHHhh---cHHHHHHHHHH
Q 008265 462 SKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT---DYYRVKALMNE 538 (572)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~a~~~---~~~~a~~~~~~ 538 (572)
+.|+..-|..||..|.+ ++.+|.++++.
T Consensus 655 -------------------------------------------------iqp~~~kwqlmiasc~rrsgnyqka~d~yk~ 685 (840)
T KOG2003|consen 655 -------------------------------------------------IQPNQSKWQLMIASCFRRSGNYQKAFDLYKD 685 (840)
T ss_pred -------------------------------------------------cCccHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 57888899988888876 56888888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHccCCc
Q 008265 539 MRTVGLSPNHISWTILIDACGGSGNV 564 (572)
Q Consensus 539 m~~~g~~p~~~~~~~l~~~~~~~g~~ 564 (572)
..+. ++-|......|+..|...|..
T Consensus 686 ~hrk-fpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 686 IHRK-FPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHh-CccchHHHHHHHHHhccccch
Confidence 7653 556777888888888777754
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.6e-10 Score=104.22 Aligned_cols=373 Identities=13% Similarity=0.124 Sum_probs=242.3
Q ss_pred hhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcch-
Q 008265 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL- 149 (572)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~- 149 (572)
+.+.+.+--.+.+.|.+++|+..|++..+..++ +-+-.+++..+..-|+-++..+.|.+|...-..||..
T Consensus 276 ikil~nigvtfiq~gqy~dainsfdh~m~~~pn---------~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddk 346 (840)
T KOG2003|consen 276 IKILNNIGVTFIQAGQYDDAINSFDHCMEEAPN---------FIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDK 346 (840)
T ss_pred HHHHhhcCeeEEecccchhhHhhHHHHHHhCcc---------HHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCccc
Confidence 444555555678889999999999999887443 2223344555667788999999999998864333322
Q ss_pred -------hhhhhhHHHHHH--HHHHhhhh--hHHHHHHHHHHHHhCCCCCcccch--H------------------HHHH
Q 008265 150 -------FDGSGFKLLKNE--CQRLLDSG--EVEMFVGLMEVLEEFRLPVKELDE--E------------------FRIV 198 (572)
Q Consensus 150 -------~~~~~~~~l~~~--~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~--~------------------~~ll 198 (572)
.+..+++-.++- ...+-+.+ +.+.++-.--++..--+.|+-..- | ..-.
T Consensus 347 yi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka 426 (840)
T KOG2003|consen 347 YIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKA 426 (840)
T ss_pred ccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHH
Confidence 122222222210 11111111 111221111111111111110000 0 1123
Q ss_pred HHHhcCCChHHHHHhhhcCCCch-----hHHHH--HHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC
Q 008265 199 QLCVNKPDVNLAIRYACIVPRAD-----ILFCN--FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGD 271 (572)
Q Consensus 199 ~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~--li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 271 (572)
..+.++|+++.|.+++..+...+ ..-+. .+..+--.+++..|.+.-+...... .-+......--.....+|+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCc
Confidence 45778999999999887764332 11222 2333333456778877776654321 1122222222223345689
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008265 272 YMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA-HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350 (572)
Q Consensus 272 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 350 (572)
+++|.+.|++.....-......||+-+.+.+ |++++|++.|-++...- .-+.....-+.+.|-...+...|++++.+.
T Consensus 506 ~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 9999999999987744444556666666544 89999999998775421 225667777888899999999999999888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008265 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430 (572)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 430 (572)
..+ ++.|..+..-|...|-+.|+-..|.+.+-+--.. ++-+..+...|...|....-++++..+|++..- +.
T Consensus 585 ~sl-----ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iq 656 (840)
T KOG2003|consen 585 NSL-----IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQ 656 (840)
T ss_pred ccc-----CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cC
Confidence 764 5677889999999999999999999887665443 344778889999999999999999999998754 48
Q ss_pred CCHHHHHHHHHHHH-HhCCHhHHHHHHHHhhhc
Q 008265 431 PNSQCCNILLQACV-EACQFDRAFRLFRSWTLS 462 (572)
Q Consensus 431 p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~ 462 (572)
|+..-|..++..|. +.|++.+|+++|+++.+.
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 99999998888765 679999999999987653
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-10 Score=113.58 Aligned_cols=278 Identities=14% Similarity=0.027 Sum_probs=210.1
Q ss_pred hhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCC---chhHHH--HHHHHHHhcCCHHHHHH
Q 008265 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR---ADILFC--NFVREFGKKRDLVSALR 242 (572)
Q Consensus 168 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~--~li~~~~~~g~~~~a~~ 242 (572)
.|+++.|.+.+....+..- .....+.....+..+.|+++.|..++..+.+ +..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~--~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAE--QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 6999999988887544321 1123333335555889999999999987633 222222 34778999999999999
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHh--cCChHHHHHHHH
Q 008265 243 AYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY-------VFNSLMNVN--AHDLKFTLEVYK 313 (572)
Q Consensus 243 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-------~~~~ll~~~--~~~~~~a~~~~~ 313 (572)
.++.+.+..+ -+...+..+...|.+.|++++|.+++..+.+.+..++.. .|..++... ..+.+...++++
T Consensus 175 ~l~~~~~~~P-~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVAP-RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcCC-CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999988753 357788999999999999999999999999886543321 222223321 234555566666
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCC
Q 008265 314 NMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393 (572)
Q Consensus 314 ~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 393 (572)
.+.+. .+.+......+..++...|+.++|.+++++..+ ..++... .++.+....++.+++++..+...+..
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~------~~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~ 324 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK------RQYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH 324 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh------cCCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC
Confidence 65432 244778888999999999999999999988875 2455532 23445556799999999999998873
Q ss_pred CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhh
Q 008265 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (572)
Q Consensus 394 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (572)
.. |...+..+...|.+.+++++|.+.|+...+. .|+..++..+...+.+.|+.++|.+++++-.
T Consensus 325 P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 325 GD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 32 5566888999999999999999999999986 7999999999999999999999999998653
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.6e-10 Score=113.55 Aligned_cols=280 Identities=12% Similarity=0.049 Sum_probs=176.2
Q ss_pred hhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchH-HHHHHHHhc
Q 008265 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEE-FRIVQLCVN 203 (572)
Q Consensus 125 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~ll~~~~~ 203 (572)
..|+++.|...+....+..-.| .++.++.+.. ..+.|+.+.|...+.++.+. .|+..... ......+..
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~~p-------~l~~llaA~a-A~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~ 165 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAEQP-------VVNYLLAAEA-AQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLA 165 (398)
T ss_pred hCCCHHHHHHHHHHHHhcccch-------HHHHHHHHHH-HHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHH
Confidence 3577777776666544432122 2222222111 13467777777777777653 22221111 122556667
Q ss_pred CCChHHHHHhhhcC----CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcH-------HHHHHHHHHHHhcCCH
Q 008265 204 KPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNM-------YICRTIIDVCGICGDY 272 (572)
Q Consensus 204 ~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-------~~~~~ll~~~~~~g~~ 272 (572)
.|+++.|...++.+ |.+......+...|.+.|+++.|.+++..+.+.+..++. ..|..++.......+.
T Consensus 166 ~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~ 245 (398)
T PRK10747 166 RNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGS 245 (398)
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 77777777765553 555677778888888888888888888888877554322 2344445544555556
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008265 273 MKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350 (572)
Q Consensus 273 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 350 (572)
+...++++.+.+. .+.+......+...+ .|+.++|..++.+..+. .++.... ++.+....++.+++.+..+..
T Consensus 246 ~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~ 320 (398)
T PRK10747 246 EGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQ 320 (398)
T ss_pred HHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHH
Confidence 6666666666433 123444444444443 47888888888877763 3344221 233334558888888888877
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008265 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426 (572)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 426 (572)
.+. .+-|...+.++...+.+.+++++|.+.|+...+. .|+...+..+...+.+.|+.++|.+++++-..
T Consensus 321 lk~-----~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 321 IKQ-----HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred Hhh-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 753 2345556778888888888888888888888886 67888888888888888888888888887653
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.4e-10 Score=100.07 Aligned_cols=292 Identities=12% Similarity=0.075 Sum_probs=218.1
Q ss_pred hhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCch--------h
Q 008265 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRAD--------I 222 (572)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--------~ 222 (572)
|-..+|.++ .++.++|.++|-+|.+. .|.++.+..+|.+.|.+.|.+|.|+++++.+..++ .
T Consensus 39 Yv~GlNfLL--------s~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~l 108 (389)
T COG2956 39 YVKGLNFLL--------SNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLL 108 (389)
T ss_pred HHhHHHHHh--------hcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHH
Confidence 334556665 48999999999999984 56677778899999999999999999998864432 4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH----HHHHH
Q 008265 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYV----FNSLM 298 (572)
Q Consensus 223 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~----~~~ll 298 (572)
....|..-|...|-++.|+.+|..+.+.+. .-......++..|-+..+|++|+++-+++.+.+-.+...- |--+-
T Consensus 109 Al~qL~~Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELA 187 (389)
T COG2956 109 ALQQLGRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELA 187 (389)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHH
Confidence 455688999999999999999999987532 2345678899999999999999999999998754433221 11121
Q ss_pred HHh--cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHH
Q 008265 299 NVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD--VFTYSTIVKVFA 374 (572)
Q Consensus 299 ~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~ 374 (572)
... ..+.+.|..++.+..+.+.+ ....--.+.+.....|+++.|.+.++.+.+. .|+ ..+...|..+|.
T Consensus 188 q~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ------n~~yl~evl~~L~~~Y~ 260 (389)
T COG2956 188 QQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQ------NPEYLSEVLEMLYECYA 260 (389)
T ss_pred HHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHh------ChHHHHHHHHHHHHHHH
Confidence 111 14789999999999876533 2233334567788999999999999999873 344 347888999999
Q ss_pred ccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---hCCHhH
Q 008265 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE---ACQFDR 451 (572)
Q Consensus 375 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~ 451 (572)
..|+.++.+..+..+.+.. +....-..+-..-....-.+.|..++.+-... +|+...+..+|+.-.. .|...+
T Consensus 261 ~lg~~~~~~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~ 336 (389)
T COG2956 261 QLGKPAEGLNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKE 336 (389)
T ss_pred HhCCHHHHHHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhh
Confidence 9999999999999998874 34444444445444555567777777776666 8999999999987644 345667
Q ss_pred HHHHHHHhhhccc
Q 008265 452 AFRLFRSWTLSKT 464 (572)
Q Consensus 452 A~~~~~~m~~~~~ 464 (572)
-..++++|....+
T Consensus 337 sL~~lr~mvge~l 349 (389)
T COG2956 337 SLDLLRDMVGEQL 349 (389)
T ss_pred hHHHHHHHHHHHH
Confidence 7777888876543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.5e-12 Score=122.11 Aligned_cols=227 Identities=17% Similarity=0.111 Sum_probs=106.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 008265 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (572)
Q Consensus 222 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 301 (572)
..|..+...+...++++.|.+.++.+...+.. +...+..++.. ...+++++|.++++...+.. ++...+...+..+
T Consensus 45 ~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~ 120 (280)
T PF13429_consen 45 EYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLY 120 (280)
T ss_dssp -----------------------------------------------------------------------------H-H
T ss_pred cccccccccccccccccccccccccccccccc-ccccccccccc-cccccccccccccccccccc--cccchhhHHHHHH
Confidence 34444555566667777777777777665433 44456666665 67777888887777665542 3444455555443
Q ss_pred --cCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccc
Q 008265 302 --AHDLKFTLEVYKNMQKLG-VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFADAK 377 (572)
Q Consensus 302 --~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g 377 (572)
.++++++..+++.+.... .+.+...|..+...+.+.|+.++|++.+++..+. .| |....+.++..+...|
T Consensus 121 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~------~P~~~~~~~~l~~~li~~~ 194 (280)
T PF13429_consen 121 YRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL------DPDDPDARNALAWLLIDMG 194 (280)
T ss_dssp HHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-------TT-HHHHHHHHHHHCTTC
T ss_pred HHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHCC
Confidence 367777777777766432 3457778888889999999999999999999884 45 4678889999999999
Q ss_pred cHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHH
Q 008265 378 WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457 (572)
Q Consensus 378 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 457 (572)
+.+++.+++....+.. ..|...|..+..+|...|+.++|..+|++..+.. +.|..+...+.+++...|+.++|.++.+
T Consensus 195 ~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 195 DYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRR 272 (280)
T ss_dssp HHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT-------------
T ss_pred ChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccc
Confidence 9999888888887764 3466778899999999999999999999998763 5578888899999999999999999987
Q ss_pred Hhh
Q 008265 458 SWT 460 (572)
Q Consensus 458 ~m~ 460 (572)
+..
T Consensus 273 ~~~ 275 (280)
T PF13429_consen 273 QAL 275 (280)
T ss_dssp ---
T ss_pred ccc
Confidence 764
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=3e-09 Score=107.46 Aligned_cols=367 Identities=11% Similarity=0.090 Sum_probs=255.7
Q ss_pred hhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchh
Q 008265 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (572)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 150 (572)
...|-.+.+++-..|++++|...|.+..+. .++.|. + .+..+...+...|+++.+...|+++.+. .||..-
T Consensus 307 aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~--l---~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~e 377 (1018)
T KOG2002|consen 307 AESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFV--L---PLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYE 377 (1018)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCcc--c---cccchhHHHHHhchHHHHHHHHHHHHHh--CcchHH
Confidence 456888899999999999999999887765 443321 1 1445677899999999999999999886 566442
Q ss_pred hhhhhHHHHHHHHHH-hhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhc---------CCCc
Q 008265 151 DGSGFKLLKNECQRL-LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI---------VPRA 220 (572)
Q Consensus 151 ~~~~~~~l~~~~~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~---------~~~~ 220 (572)
++.++-..+... ......+.|..++.+..+. .|.+...|..+...+....-+. ++.++.. .+..
T Consensus 378 ---tm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~--~~~d~~a~l~laql~e~~d~~~-sL~~~~~A~d~L~~~~~~ip 451 (1018)
T KOG2002|consen 378 ---TMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ--TPVDSEAWLELAQLLEQTDPWA-SLDAYGNALDILESKGKQIP 451 (1018)
T ss_pred ---HHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc--ccccHHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHcCCCCC
Confidence 444444434343 2234568888888887764 3667777877777665544333 2444332 2333
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCCcH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 008265 221 DILFCNFVREFGKKRDLVSALRAYDASKKH---LSSPNM------YICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI 291 (572)
Q Consensus 221 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~------~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 291 (572)
....|.+.......|++++|...|+..... ...++. .+--.+...+-..++.+.|.+.|..+.+. .|.-
T Consensus 452 ~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~Y 529 (1018)
T KOG2002|consen 452 PEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGY 529 (1018)
T ss_pred HHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--Cchh
Confidence 478999999999999999999999987654 122333 12223445556668999999999999876 3443
Q ss_pred -HHHHHHHHHhc---CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHH
Q 008265 292 -YVFNSLMNVNA---HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367 (572)
Q Consensus 292 -~~~~~ll~~~~---~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 367 (572)
..|--+. +.+ +...+|...++...... ..++..++.+...+.+...|..|..-|....+.. . ..+|.+..-
T Consensus 530 Id~ylRl~-~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~-~--~~~D~Ysli 604 (1018)
T KOG2002|consen 530 IDAYLRLG-CMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKT-S--TKTDAYSLI 604 (1018)
T ss_pred HHHHHHhh-HHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhh-c--cCCchhHHH
Confidence 2333332 222 57888888888877643 2355556667777888888888888666665421 1 236777666
Q ss_pred HHHHHHHc------------cccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 008265 368 TIVKVFAD------------AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQC 435 (572)
Q Consensus 368 ~li~~~~~------------~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 435 (572)
+|.+.|.. .+..++|+++|.+..+...+ |...-|.+.-.++..|++.+|..+|.++.+.. .-...+
T Consensus 605 aLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv 682 (1018)
T KOG2002|consen 605 ALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDV 682 (1018)
T ss_pred HhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCce
Confidence 66665432 34577899999988876433 66777788888889999999999999998764 334567
Q ss_pred HHHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 436 CNILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 436 ~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
|..+..+|..+|++..|+++|+...+
T Consensus 683 ~lNlah~~~e~~qy~~AIqmYe~~lk 708 (1018)
T KOG2002|consen 683 WLNLAHCYVEQGQYRLAIQMYENCLK 708 (1018)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999987643
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.2e-10 Score=98.06 Aligned_cols=289 Identities=9% Similarity=0.049 Sum_probs=204.4
Q ss_pred cCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHH
Q 008265 84 DGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQ 163 (572)
Q Consensus 84 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~ 163 (572)
+++.++|+.+|-+|.+. +|.++.. ...+...+-+.|..|+|+.+.+.+.+. ||.. +..-...+.....
T Consensus 48 s~Q~dKAvdlF~e~l~~--d~~t~e~------~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT-~~qr~lAl~qL~~ 115 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE--DPETFEA------HLTLGNLFRSRGEVDRAIRIHQTLLES---PDLT-FEQRLLALQQLGR 115 (389)
T ss_pred hcCcchHHHHHHHHHhc--CchhhHH------HHHHHHHHHhcchHHHHHHHHHHHhcC---CCCc-hHHHHHHHHHHHH
Confidence 46778888888888875 4544433 333445566788888888888887774 4432 3333333333444
Q ss_pred HHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 008265 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRA 243 (572)
Q Consensus 164 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 243 (572)
.+...|-+|.|..+|..+.+.+... ......|+..|-+.++|++|.++
T Consensus 116 Dym~aGl~DRAE~~f~~L~de~efa--------------------------------~~AlqqLl~IYQ~treW~KAId~ 163 (389)
T COG2956 116 DYMAAGLLDRAEDIFNQLVDEGEFA--------------------------------EGALQQLLNIYQATREWEKAIDV 163 (389)
T ss_pred HHHHhhhhhHHHHHHHHHhcchhhh--------------------------------HHHHHHHHHHHHHhhHHHHHHHH
Confidence 4555777777777777766533211 13455688999999999999999
Q ss_pred HHHHHhcCCCCc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH---hcCChHHHHHHHHHHH
Q 008265 244 YDASKKHLSSPN----MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV---NAHDLKFTLEVYKNMQ 316 (572)
Q Consensus 244 ~~~m~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~---~~~~~~~a~~~~~~m~ 316 (572)
-+++.+.+..+. ...|.-+...+....+++.|..++.+..+. .|+.+--++++.- ..|+++.|.+.++...
T Consensus 164 A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~ 241 (389)
T COG2956 164 AERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVL 241 (389)
T ss_pred HHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHH
Confidence 998888765543 235666777777778899999999998876 3555555555442 3389999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCC
Q 008265 317 KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396 (572)
Q Consensus 317 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 396 (572)
+.+...-..+...|..+|.+.|+.++....+..+.+ ..+....-..+-.--......+.|...+.+-... +|
T Consensus 242 eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~------~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~P 313 (389)
T COG2956 242 EQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME------TNTGADAELMLADLIELQEGIDAAQAYLTRQLRR--KP 313 (389)
T ss_pred HhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH------ccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CC
Confidence 887666677888999999999999999999999887 3556656666666656666777887777766665 79
Q ss_pred chhhHHHHHHHHHHc---CCHHHHHHHHHHHHH
Q 008265 397 NTITWSSLINACANA---GLVEQAMHLFEEMLQ 426 (572)
Q Consensus 397 ~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~ 426 (572)
+...+..+|..-... |...+-..++..|..
T Consensus 314 t~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 314 TMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred cHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 999999999876533 345566666666653
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.4e-10 Score=109.55 Aligned_cols=58 Identities=9% Similarity=0.010 Sum_probs=31.7
Q ss_pred HHHHHHHHHHccccHHHHHHHHH--HHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 008265 365 TYSTIVKVFADAKWWQMALKVKE--DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424 (572)
Q Consensus 365 ~~~~li~~~~~~g~~~~a~~~~~--~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 424 (572)
...++...+.+.|++++|.+.|+ ...+. .|+...+..+...+.+.|+.++|.+++++.
T Consensus 337 ll~sLg~l~~~~~~~~~A~~~le~a~a~~~--~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 337 INRALGQLLMKHGEFIEAADAFKNVAACKE--QLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHhHHhhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34455555555566666666555 33333 355555555555566666666665555554
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.7e-11 Score=114.14 Aligned_cols=273 Identities=13% Similarity=0.118 Sum_probs=206.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHhcCChHH---HH
Q 008265 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN--VTLNIYVFNSLMNVNAHDLKF---TL 309 (572)
Q Consensus 235 g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~---a~ 309 (572)
-+.++|...|..+..+ +.-+..+...+-++|...+++++|.++|+.+.+.. ..-+...|.+.+....+..+. |.
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 3567888888886654 22234667788899999999999999999998762 122567888888766554332 23
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccccHHHHHHHHHH
Q 008265 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFADAKWWQMALKVKED 388 (572)
Q Consensus 310 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~ 388 (572)
++.+.+ +-.+.+|.++.++|...++.+.|++.|+...+ +.| ..++|+.+..-+.....+|.|...|+.
T Consensus 412 ~Li~~~-----~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ------ldp~faYayTLlGhE~~~~ee~d~a~~~fr~ 480 (638)
T KOG1126|consen 412 DLIDTD-----PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ------LDPRFAYAYTLLGHESIATEEFDKAMKSFRK 480 (638)
T ss_pred HHHhhC-----CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc------cCCccchhhhhcCChhhhhHHHHhHHHHHHh
Confidence 333322 23678999999999999999999999999987 456 678999999999999999999999999
Q ss_pred HHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhccccccc
Q 008265 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVAL 468 (572)
Q Consensus 389 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 468 (572)
......+ +-..|..|.-.|.+.++++.|+-.|+...+-+ +-+.+....+...+-+.|+.|+|++++++....+.
T Consensus 481 Al~~~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~---- 554 (638)
T KOG1126|consen 481 ALGVDPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP---- 554 (638)
T ss_pred hhcCCch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC----
Confidence 8854221 33456667778999999999999999998765 45677778888889999999999999998754332
Q ss_pred ccccCCchHHHHhhhhhccccccCCCCcccCCccchhhhhcCCCCCHHHHHHHHHHHhhcHHHHHHHHHHHHhCCCCCCH
Q 008265 469 GEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNH 548 (572)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~a~~~~~~~a~~~~~~m~~~g~~p~~ 548 (572)
-.|-.....+.|--...+.++|...++++.+ +.|+.
T Consensus 555 ------------------------------------------kn~l~~~~~~~il~~~~~~~eal~~LEeLk~--~vP~e 590 (638)
T KOG1126|consen 555 ------------------------------------------KNPLCKYHRASILFSLGRYVEALQELEELKE--LVPQE 590 (638)
T ss_pred ------------------------------------------CCchhHHHHHHHHHhhcchHHHHHHHHHHHH--hCcch
Confidence 1233344445555555688999999999988 67875
Q ss_pred -HHHHHHHHHHHccCCcccccc
Q 008265 549 -ISWTILIDACGGSGNVEGALQ 569 (572)
Q Consensus 549 -~~~~~l~~~~~~~g~~~~a~~ 569 (572)
..|-.+...|.+-|+.+.|+.
T Consensus 591 s~v~~llgki~k~~~~~~~Al~ 612 (638)
T KOG1126|consen 591 SSVFALLGKIYKRLGNTDLALL 612 (638)
T ss_pred HHHHHHHHHHHHHHccchHHHH
Confidence 467777799999998887763
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.38 E-value=4e-10 Score=109.30 Aligned_cols=278 Identities=11% Similarity=0.036 Sum_probs=191.1
Q ss_pred hhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCC-------chhHHHHHHHHHHhcCCH-HH
Q 008265 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR-------ADILFCNFVREFGKKRDL-VS 239 (572)
Q Consensus 168 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-------~~~~~~~li~~~~~~g~~-~~ 239 (572)
.-+..+|+.+|+.+.+. .+++......+..+|.+.+++++|+++|+.+.. .-.+|.+.+..+-+.-.. -.
T Consensus 332 ~y~~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~L 409 (638)
T KOG1126|consen 332 QYNCREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYL 409 (638)
T ss_pred HHHHHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHH
Confidence 35778888888885443 344445556788888888888888888877532 226777776655332111 11
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhc--CChHHHHHHHHHHH
Q 008265 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL-NIYVFNSLMNVNA--HDLKFTLEVYKNMQ 316 (572)
Q Consensus 240 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~--~~~~~a~~~~~~m~ 316 (572)
|..+.+.. +-...+|.++-++|.-+++.+.|++.|++..+. .| ..++|+.+=+-+. ..+|.|...|+...
T Consensus 410 aq~Li~~~-----~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al 482 (638)
T KOG1126|consen 410 AQDLIDTD-----PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKAL 482 (638)
T ss_pred HHHHHhhC-----CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhh
Confidence 22222222 224578888888888889999999998888875 34 4555655544332 57888888888876
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCC
Q 008265 317 KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395 (572)
Q Consensus 317 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 395 (572)
....+ +-..|-.+...|.+.++++.|+-.|+.+.+ +.| +......+...+.+.|+.|+|++++++......+
T Consensus 483 ~~~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~------INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k 555 (638)
T KOG1126|consen 483 GVDPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVE------INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK 555 (638)
T ss_pred cCCch-hhHHHHhhhhheeccchhhHHHHHHHhhhc------CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC
Confidence 53211 222344466678888899999888888876 344 4556677777888888999999999988876544
Q ss_pred CchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHhCCHhHHHHHHHHhhhccc
Q 008265 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP-NSQCCNILLQACVEACQFDRAFRLFRSWTLSKT 464 (572)
Q Consensus 396 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 464 (572)
|..+--..+..+...++.++|+..++++++. .| +..+|..+...|-+.|+.+.|..-|.-+.+.+.
T Consensus 556 -n~l~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 556 -NPLCKYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred -CchhHHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 5555455666777778889999999988875 44 456677777888889999888888877765543
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.9e-08 Score=92.53 Aligned_cols=454 Identities=12% Similarity=0.051 Sum_probs=226.6
Q ss_pred hhhhcccCCchhhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcC-ChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHH
Q 008265 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEG-NVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLK 137 (572)
Q Consensus 59 ~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 137 (572)
+.++++..|.. ..|.-+|++..-++.|..++....+.-+ +|. ++......--..|+.+....+.+
T Consensus 399 L~rAveccp~s-----~dLwlAlarLetYenAkkvLNkaRe~iptd~~---------IWitaa~LEE~ngn~~mv~kii~ 464 (913)
T KOG0495|consen 399 LERAVECCPQS-----MDLWLALARLETYENAKKVLNKAREIIPTDRE---------IWITAAKLEEANGNVDMVEKIID 464 (913)
T ss_pred HHHHHHhccch-----HHHHHHHHHHHHHHHHHHHHHHHHhhCCCChh---------HHHHHHHHHHhcCCHHHHHHHHH
Confidence 44555555654 3344556667777778888877776532 222 22222222234555555555543
Q ss_pred Hh----hhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcc-cchHHHHHHHHhcCCChHHHHH
Q 008265 138 KL----NELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKE-LDEEFRIVQLCVNKPDVNLAIR 212 (572)
Q Consensus 138 ~m----~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~ 212 (572)
+- ...|+.-+. +.+++-....-+.|..--+..+.......|+...+ ..+|..-.+.|...+.++-|..
T Consensus 465 rgl~~L~~ngv~i~r-------dqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carA 537 (913)
T KOG0495|consen 465 RGLSELQANGVEINR-------DQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARA 537 (913)
T ss_pred HHHHHHhhcceeecH-------HHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHH
Confidence 32 233444322 12222222222345555555555555544443222 3456666666666666666655
Q ss_pred hhhc----CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 008265 213 YACI----VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT 288 (572)
Q Consensus 213 ~~~~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 288 (572)
+|.. .|.+...|..+...=-..|..++-..+|.+....-. -....|-....-+-..|+...|..++.+..+....
T Consensus 538 Vya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p-kae~lwlM~ake~w~agdv~~ar~il~~af~~~pn 616 (913)
T KOG0495|consen 538 VYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP-KAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN 616 (913)
T ss_pred HHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC
Confidence 5433 344445666666665666666666666666655422 23344555555555566666666666666554211
Q ss_pred CCHHHHHHHHH--HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHH-H
Q 008265 289 LNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF-T 365 (572)
Q Consensus 289 p~~~~~~~ll~--~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~ 365 (572)
+...|-.-+. .-...++.|..+|.+.... .|+...|.--+..---.++.++|.+++++..+ .-|+-. .
T Consensus 617 -seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk------~fp~f~Kl 687 (913)
T KOG0495|consen 617 -SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALK------SFPDFHKL 687 (913)
T ss_pred -cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH------hCCchHHH
Confidence 2333333333 2334566666666655542 34444554444444455666666666666554 233333 5
Q ss_pred HHHHHHHHHccccHHHHHHHHHHHHHCCCCCch-hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008265 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT-ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444 (572)
Q Consensus 366 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 444 (572)
|-.+...+-+.++++.|.+.|..-.+. -|+. -.|-.|...=-+.|.+-+|..+++...-.+ +-+...|...|+.=.
T Consensus 688 ~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~El 764 (913)
T KOG0495|consen 688 WLMLGQIEEQMENIEMAREAYLQGTKK--CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMEL 764 (913)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhcccc--CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHH
Confidence 555555666666666666666554433 2333 344444444455556666666666665544 345556666666666
Q ss_pred HhCCHhHHHHHHHHhhhcccccccccccCCchHHHHhhhhhccccccCCCCcccCCccchhhhhcCCCCCHHHHHHHHHH
Q 008265 445 EACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKA 524 (572)
Q Consensus 445 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~a 524 (572)
+.|+.+.|..++.+..+.-........ +.+........ ....-+.++++ ..|....-++-..
T Consensus 765 R~gn~~~a~~lmakALQecp~sg~LWa-----EaI~le~~~~r-----------kTks~DALkkc--e~dphVllaia~l 826 (913)
T KOG0495|consen 765 RAGNKEQAELLMAKALQECPSSGLLWA-----EAIWLEPRPQR-----------KTKSIDALKKC--EHDPHVLLAIAKL 826 (913)
T ss_pred HcCCHHHHHHHHHHHHHhCCccchhHH-----HHHHhccCccc-----------chHHHHHHHhc--cCCchhHHHHHHH
Confidence 666666666655544432211100000 00000000000 00000111222 2333333333333
Q ss_pred Hh--hcHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHccCCccc
Q 008265 525 CC--TDYYRVKALMNEMRTVGLSPNH-ISWTILIDACGGSGNVEG 566 (572)
Q Consensus 525 ~~--~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~ 566 (572)
+- +..+.|.+.|.+..+. .||. .+|.-+..-+..+|.-++
T Consensus 827 fw~e~k~~kar~Wf~Ravk~--d~d~GD~wa~fykfel~hG~eed 869 (913)
T KOG0495|consen 827 FWSEKKIEKAREWFERAVKK--DPDNGDAWAWFYKFELRHGTEED 869 (913)
T ss_pred HHHHHHHHHHHHHHHHHHcc--CCccchHHHHHHHHHHHhCCHHH
Confidence 32 3568888888888774 4654 577777777788885443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.2e-08 Score=92.06 Aligned_cols=279 Identities=11% Similarity=0.102 Sum_probs=195.0
Q ss_pred hhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHH--HHHHHHhcCCHHHHHHH
Q 008265 166 LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCN--FVREFGKKRDLVSALRA 243 (572)
Q Consensus 166 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--li~~~~~~g~~~~a~~~ 243 (572)
.+.|..+.|+..|...... -|.....|..| ..-..+.+.+..+....+.+...+.. +..++-...+.+++..-
T Consensus 175 k~~~~~s~A~~sfv~~v~~--~P~~W~AWleL---~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k 249 (559)
T KOG1155|consen 175 KELGLLSLAIDSFVEVVNR--YPWFWSAWLEL---SELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQK 249 (559)
T ss_pred HhhchHHHHHHHHHHHHhc--CCcchHHHHHH---HHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888898888776542 34443344333 33334445544444444543222221 45666677788888888
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-C-CCHHHHHHHHHHhcCChHH---HHHHHHHHHHc
Q 008265 244 YDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV-T-LNIYVFNSLMNVNAHDLKF---TLEVYKNMQKL 318 (572)
Q Consensus 244 ~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~-p~~~~~~~ll~~~~~~~~~---a~~~~~~m~~~ 318 (572)
.+.....|+.-+...-+....+.-...++++|+.+|+++.+... . -|..+|+.++.+...+... |..+++ -.
T Consensus 250 ~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~---id 326 (559)
T KOG1155|consen 250 KERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSN---ID 326 (559)
T ss_pred HHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHH---hc
Confidence 88888888876665555556666788999999999999998721 1 2567888887765432222 222221 11
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCc
Q 008265 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397 (572)
Q Consensus 319 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 397 (572)
+--+.|+..+.+-|+-.++.++|...|+...++ .|. ...|+.+..-|...++...|.+-++...+-... |
T Consensus 327 --KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~-D 397 (559)
T KOG1155|consen 327 --KYRPETCCIIANYYSLRSEHEKAVMYFKRALKL------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR-D 397 (559)
T ss_pred --cCCccceeeehhHHHHHHhHHHHHHHHHHHHhc------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch-h
Confidence 223467788888888888888899999888873 444 457888888888888888999988888876433 7
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhc
Q 008265 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (572)
Q Consensus 398 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 462 (572)
-..|-.|-++|.-.+...=|+-+|++..+.. +-|...|.+|.++|.+.++.++|.+.|.+....
T Consensus 398 yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 398 YRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred HHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 7888888889888888888888888887752 446788888888999999999998888876643
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.2e-12 Score=117.58 Aligned_cols=226 Identities=15% Similarity=0.179 Sum_probs=86.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-hcCC
Q 008265 227 FVREFGKKRDLVSALRAYDASKKHL-SSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV-NAHD 304 (572)
Q Consensus 227 li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~ 304 (572)
+...+.+.|++++|+++++...... ...+...|..+...+-..++++.|.+.++++...+.. +...+..++.. ..++
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l~~~~~ 92 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQLLQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccc
Confidence 4566677788888888886544432 2234445555566666778888888888888766432 34445555544 3467
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHH
Q 008265 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALK 384 (572)
Q Consensus 305 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 384 (572)
+++|.+++....+.. ++...+..++..+.+.++++++..+++.+... ...+.+...|..+...+.+.|+.++|++
T Consensus 93 ~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 93 PEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEEL---PAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH----T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred ccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhc---cCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 788887776654432 45556677777788888888888888887642 2134566777778888888888888888
Q ss_pred HHHHHHHCCCCC-chhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 385 VKEDMLSAGVTP-NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 385 ~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
.+++..+. .| |....+.++..+...|+.+++.+++....+.. +.|...+..+..++...|+.++|...|++..+
T Consensus 168 ~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 168 DYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccc
Confidence 88888776 44 45667778888888888888878777776653 44555677778888888888888888877654
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3e-09 Score=97.19 Aligned_cols=281 Identities=15% Similarity=0.094 Sum_probs=149.0
Q ss_pred hhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcC
Q 008265 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNK 204 (572)
Q Consensus 125 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 204 (572)
..|+|..|..+..+-.+.+-.| +++.++.+- .--..|+.+.+-.++.+..+.--. ++....-+........
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p-------~l~~l~aA~-AA~qrgd~~~an~yL~eaae~~~~-~~l~v~ltrarlll~~ 166 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQP-------VLAYLLAAE-AAQQRGDEDRANRYLAEAAELAGD-DTLAVELTRARLLLNR 166 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcch-------HHHHHHHHH-HHHhcccHHHHHHHHHHHhccCCC-chHHHHHHHHHHHHhC
Confidence 4455555555555554444333 333222211 112245555555555555432100 1111223334444555
Q ss_pred CChHHHHHhhhc----CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcH-------HHHHHHHHHHHhcCCHH
Q 008265 205 PDVNLAIRYACI----VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNM-------YICRTIIDVCGICGDYM 273 (572)
Q Consensus 205 g~~~~a~~~~~~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-------~~~~~ll~~~~~~g~~~ 273 (572)
|+.+.|..-.+. -|....+.....++|.+.|++.....+...|.+.|.--+. .+|+.+++-....+..+
T Consensus 167 ~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~ 246 (400)
T COG3071 167 RDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSE 246 (400)
T ss_pred CCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccch
Confidence 555555443332 2334456666677777777777777777777666654332 35666666555555555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHH--HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008265 274 KSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351 (572)
Q Consensus 274 ~a~~~~~~m~~~g~~p~~~~~~~ll~--~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 351 (572)
.-...++....+ .+-+...-..++. ..+|+.++|.++..+..+.+..|... ..-.+.+.++.+.-++..+...
T Consensus 247 gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l 321 (400)
T COG3071 247 GLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWL 321 (400)
T ss_pred HHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHH
Confidence 544555554332 1122222222222 24466777777776666665555411 1223445556555555555544
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008265 352 HLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426 (572)
Q Consensus 352 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 426 (572)
+. .+-+...+.+|...|.+.+.|.+|...|+...+. .|+..+|+.+..++.+.|+..+|.+++++...
T Consensus 322 ~~-----h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 322 KQ-----HPEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred Hh-----CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 32 2334456667777777777777777777765554 66777777777777777777777777776553
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.7e-12 Score=83.69 Aligned_cols=49 Identities=37% Similarity=0.676 Sum_probs=27.0
Q ss_pred CchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008265 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444 (572)
Q Consensus 396 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 444 (572)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.8e-12 Score=83.61 Aligned_cols=50 Identities=32% Similarity=0.543 Sum_probs=45.4
Q ss_pred CCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHH
Q 008265 361 LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410 (572)
Q Consensus 361 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 410 (572)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.||++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999998874
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.1e-08 Score=99.56 Aligned_cols=290 Identities=12% Similarity=0.129 Sum_probs=212.1
Q ss_pred hhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhc----CCCchhHHHHHHHHHHhcCCHHHHHHH
Q 008265 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKRDLVSALRA 243 (572)
Q Consensus 168 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~----~~~~~~~~~~li~~~~~~g~~~~a~~~ 243 (572)
.|++++|.+++.++.+. .|.....|.+|...|-+.|+.+++...+-. -|.+...|..+.....+.|.++.|.-.
T Consensus 152 rg~~eeA~~i~~EvIkq--dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQ--DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred hCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 49999999999999875 577788999999999999999999886543 366668999999999999999999999
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc------CChHHHHHHHHHHHH
Q 008265 244 YDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA------HDLKFTLEVYKNMQK 317 (572)
Q Consensus 244 ~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~------~~~~~a~~~~~~m~~ 317 (572)
|.+..+..+ ++...+---...|-+.|+...|..-|.++.....+.|..-+..++...+ ++.+.|.+.+.....
T Consensus 230 y~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 230 YSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 999988743 3444555557788999999999999999998743334444444444322 345778777776655
Q ss_pred -cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH----------------------hC-CCCCCHHHHHHHHHHH
Q 008265 318 -LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA----------------------KG-VLKLDVFTYSTIVKVF 373 (572)
Q Consensus 318 -~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----------------------~~-~~~~~~~~~~~li~~~ 373 (572)
.+-..+...++.++..+.+...++.+......+..... .| .+.++..+ --++-++
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL 387 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICL 387 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhh
Confidence 22334566788888899999999988887777665110 00 02223333 1222334
Q ss_pred HccccHHHHHHHHHHHHHCCC--CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhH
Q 008265 374 ADAKWWQMALKVKEDMLSAGV--TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451 (572)
Q Consensus 374 ~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 451 (572)
.+.+..+....+.....+..+ .-+...|.-+..+|...|.+.+|..+|..+.....--+..+|--+..+|...|..++
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 444444555555555555543 334567888889999999999999999999876555567788999999999999999
Q ss_pred HHHHHHHhhh
Q 008265 452 AFRLFRSWTL 461 (572)
Q Consensus 452 A~~~~~~m~~ 461 (572)
|.+.|+....
T Consensus 468 A~e~y~kvl~ 477 (895)
T KOG2076|consen 468 AIEFYEKVLI 477 (895)
T ss_pred HHHHHHHHHh
Confidence 9999988765
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.9e-07 Score=83.68 Aligned_cols=277 Identities=16% Similarity=0.060 Sum_probs=195.0
Q ss_pred hhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCC---ch--hHHHHHHHHHHhcCCHHHHHH
Q 008265 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR---AD--ILFCNFVREFGKKRDLVSALR 242 (572)
Q Consensus 168 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~--~~~~~li~~~~~~g~~~~a~~ 242 (572)
.|+|.+|.++..+-.+.+-.| ...|..-..+.-+.|+.+.+-++..+..+ ++ .+.-+..+.....|++..|..
T Consensus 97 eG~~~qAEkl~~rnae~~e~p--~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP--VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch--HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 799999999998866655333 34455556777788999999888877522 22 455667788888999999999
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHhc--CChHHHHHHHH
Q 008265 243 AYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI-------YVFNSLMNVNA--HDLKFTLEVYK 313 (572)
Q Consensus 243 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~~~~~ll~~~~--~~~~~a~~~~~ 313 (572)
-++.+.+.+.. +.........+|.+.|++.....++..|.+.|.--|. .+|+.++.-.. +..+.-...++
T Consensus 175 ~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 99988887544 5667889999999999999999999999998865553 34555555333 22333233444
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHC-
Q 008265 314 NMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA- 392 (572)
Q Consensus 314 ~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~- 392 (572)
.... ..+-++..-.+++.-+.++|+.++|.++..+..+.. -|.. -...-.+.+-++.+.-++..++-.+.
T Consensus 254 ~~pr-~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~------~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~~h 324 (400)
T COG3071 254 NQPR-KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQ------WDPR--LCRLIPRLRPGDPEPLIKAAEKWLKQH 324 (400)
T ss_pred hccH-HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhc------cChh--HHHHHhhcCCCCchHHHHHHHHHHHhC
Confidence 4433 355567777788888888888888888887776531 2222 12223455667777666666655443
Q ss_pred CCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhh
Q 008265 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (572)
Q Consensus 393 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (572)
+. +...+.+|-.-|.+.+.+.+|.+.|+...+. .|+..+|+.+.+++.+.|+..+|.+..++-.
T Consensus 325 ~~--~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 325 PE--DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred CC--ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 33 3366777888888888888888888866654 7888888888888888888888888877644
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.1e-07 Score=88.58 Aligned_cols=252 Identities=12% Similarity=0.113 Sum_probs=190.1
Q ss_pred HHHHHhcCCChHHHHHhhhc-----CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCcHHHHHHHHHHHHhc
Q 008265 197 IVQLCVNKPDVNLAIRYACI-----VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLS--SPNMYICRTIIDVCGIC 269 (572)
Q Consensus 197 ll~~~~~~g~~~~a~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~ 269 (572)
+..++.+....+++..-... ++.....-+....+.-...|++.|+.+|+++.+..+ --|..+|..++..--.+
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 45666666666666554333 455555555566667778999999999999988732 12677888887643332
Q ss_pred CCHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhc--CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 008265 270 GDYM-KSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEI 346 (572)
Q Consensus 270 g~~~-~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 346 (572)
..+. .|..++ .-....|. |.-++-+-|+ ++.++|...|+...+.+.. ....|+.+.+-|....+...|++-
T Consensus 313 skLs~LA~~v~---~idKyR~E--TCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 313 SKLSYLAQNVS---NIDKYRPE--TCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred HHHHHHHHHHH---HhccCCcc--ceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHH
Confidence 2221 122222 11223343 3223333233 6789999999999987654 577899999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008265 347 YGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426 (572)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 426 (572)
++...++ .+.|-..|-.|..+|.-.+...=|+-.|++..+-.. -|...|.+|..+|.+.++.++|.+.|.....
T Consensus 387 YRrAvdi-----~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP-nDsRlw~aLG~CY~kl~~~~eAiKCykrai~ 460 (559)
T KOG1155|consen 387 YRRAVDI-----NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKP-NDSRLWVALGECYEKLNRLEEAIKCYKRAIL 460 (559)
T ss_pred HHHHHhc-----CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 9999985 356777999999999999999999999999988643 3789999999999999999999999999998
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 427 AGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 427 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
.| ..+...+..|...|-+.++.++|...|++-.+
T Consensus 461 ~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 461 LG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred cc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 77 45678899999999999999999999987654
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.24 E-value=7e-08 Score=90.45 Aligned_cols=315 Identities=15% Similarity=0.079 Sum_probs=206.9
Q ss_pred hhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHH
Q 008265 122 KSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLC 201 (572)
Q Consensus 122 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~ 201 (572)
-+.+.|++++|+..|.+.++. .|+. ...|.-...++.. .|+|+++++---..++ +.|+-+..+..-..++
T Consensus 124 ~~f~~kkY~eAIkyY~~AI~l--~p~e---piFYsNraAcY~~---lgd~~~Vied~TkALE--l~P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 124 KFFRNKKYDEAIKYYTQAIEL--CPDE---PIFYSNRAACYES---LGDWEKVIEDCTKALE--LNPDYVKALLRRASAH 193 (606)
T ss_pred hhhhcccHHHHHHHHHHHHhc--CCCC---chhhhhHHHHHHH---HhhHHHHHHHHHHHhh--cCcHHHHHHHHHHHHH
Confidence 467999999999999999886 5652 1245545544444 6999999887666654 4566666677777888
Q ss_pred hcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHH---------HhcC--CCCcHHHHHHHHHHHHhc-
Q 008265 202 VNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDAS---------KKHL--SSPNMYICRTIIDVCGIC- 269 (572)
Q Consensus 202 ~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m---------~~~~--~~~~~~~~~~ll~~~~~~- 269 (572)
-..|++++|+. +.+...+...+....-.-.+.+++... .+.+ +-|.....++....+...
T Consensus 194 E~lg~~~eal~--------D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~ 265 (606)
T KOG0547|consen 194 EQLGKFDEALF--------DVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADP 265 (606)
T ss_pred HhhccHHHHHH--------hhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccc
Confidence 88899998866 234444444444444444444444321 2111 224333333322222100
Q ss_pred ------------------------C---CHHHHHHHHHHHHhC-CCCCCHH---------HHHHHHH----HhcCChHHH
Q 008265 270 ------------------------G---DYMKSRAIYEDLRSQ-NVTLNIY---------VFNSLMN----VNAHDLKFT 308 (572)
Q Consensus 270 ------------------------g---~~~~a~~~~~~m~~~-g~~p~~~---------~~~~ll~----~~~~~~~~a 308 (572)
+ .+..|.+.+.+-... -..++.. .-..++. ...|+...+
T Consensus 266 ~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a 345 (606)
T KOG0547|consen 266 KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGA 345 (606)
T ss_pred cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhh
Confidence 1 122222222221110 0111111 1112222 345899999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHH
Q 008265 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388 (572)
Q Consensus 309 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 388 (572)
...|+..++....++. .|--+..+|....+.++..+.|.....+. +-|..+|..-...+.-.+++++|..=|++
T Consensus 346 ~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-----p~n~dvYyHRgQm~flL~q~e~A~aDF~K 419 (606)
T KOG0547|consen 346 QEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-----PENPDVYYHRGQMRFLLQQYEEAIADFQK 419 (606)
T ss_pred hhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-----CCCCchhHhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999987655443 26667778999999999999999998752 23445677777777788999999999999
Q ss_pred HHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhc
Q 008265 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (572)
Q Consensus 389 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 462 (572)
.+..... +...|--+..+.-+.++++++...|++.+++ ++--..+|+.....+...++++.|.+.|+...+.
T Consensus 420 ai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 420 AISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 9876322 4456666666667889999999999999876 4556789999999999999999999999987653
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.1e-07 Score=86.25 Aligned_cols=220 Identities=15% Similarity=0.118 Sum_probs=168.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHhcCChHHH
Q 008265 230 EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN-VTLNIYVFNSLMNVNAHDLKFT 308 (572)
Q Consensus 230 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~a 308 (572)
.+.-.|+.-.|.+-|+........++ ..|--+-..|....+.++.++.|++..+.+ -.||++....-|....+++++|
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHH
Confidence 33446888888888888887644433 337777788899999999999999988764 3466777777777888999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHH
Q 008265 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388 (572)
Q Consensus 309 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 388 (572)
..-|++.+..... +...|--+.-+..+.++++++...|++.++. ++....+|+.....+...++++.|.+.|+.
T Consensus 414 ~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-----FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ 487 (606)
T KOG0547|consen 414 IADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-----FPNCPEVYNLFAEILTDQQQFDKAVKQYDK 487 (606)
T ss_pred HHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCCCchHHHHHHHHHhhHHhHHHHHHHHHH
Confidence 9999999875433 4555666666667889999999999999864 566778999999999999999999999999
Q ss_pred HHHCCCCCc-------hhhH--HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHh
Q 008265 389 MLSAGVTPN-------TITW--SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (572)
Q Consensus 389 m~~~g~~p~-------~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (572)
..+. .|+ ..++ -.++..-.+ +++..|.+++++..+.. +-....|..|...-.+.|++++|+++|++-
T Consensus 488 ai~L--E~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 488 AIEL--EPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred HHhh--ccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 8775 333 1111 112211122 88999999999998764 234567889999999999999999999976
Q ss_pred h
Q 008265 460 T 460 (572)
Q Consensus 460 ~ 460 (572)
.
T Consensus 564 a 564 (606)
T KOG0547|consen 564 A 564 (606)
T ss_pred H
Confidence 4
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.7e-09 Score=106.48 Aligned_cols=207 Identities=14% Similarity=0.162 Sum_probs=130.6
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc--CChHHHHHHHHHHHHcC
Q 008265 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLG 319 (572)
Q Consensus 242 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~~ 319 (572)
.++..+...|+.|+-.||..+|..|+..|+.+.|- +|.-|+-+....+...|+.++.+.. ++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 35667788899999999999999999999999999 9999988877788889999988754 5655554
Q ss_pred CCCCHHHHHHHHHHHHHcCChHH---HHHHHHHHHH-HHHhCCCCCCHHHH-------------HHHHHHHHccccHHHH
Q 008265 320 VMADMASYNILLKACCLAGNTVL---AQEIYGEVKH-LEAKGVLKLDVFTY-------------STIVKVFADAKWWQMA 382 (572)
Q Consensus 320 ~~~~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~-~~~~~~~~~~~~~~-------------~~li~~~~~~g~~~~a 382 (572)
.|...||+.++.+|...||..- +++.+..+.. ....|.-.|....+ ...+.-..-.|-++.+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 5788999999999999998654 3332222211 11112101111110 1122222334555555
Q ss_pred HHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhc
Q 008265 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (572)
Q Consensus 383 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 462 (572)
++++..+...... . ++-..++-+... .....++........-.|+..+|.+++.+-.-.|+.+.|..++.+|++.
T Consensus 159 lkll~~~Pvsa~~--~-p~~vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~ 233 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWN--A-PFQVFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEK 233 (1088)
T ss_pred HHHHhhCCccccc--c-hHHHHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc
Confidence 5555544322111 0 111123333322 2233444443333211589999999999999999999999999999877
Q ss_pred ccc
Q 008265 463 KTQ 465 (572)
Q Consensus 463 ~~~ 465 (572)
|..
T Consensus 234 gfp 236 (1088)
T KOG4318|consen 234 GFP 236 (1088)
T ss_pred CCC
Confidence 643
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.15 E-value=6e-08 Score=88.46 Aligned_cols=199 Identities=11% Similarity=0.011 Sum_probs=118.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 008265 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (572)
Q Consensus 222 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 301 (572)
..+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---------------- 94 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTL---------------- 94 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----------------
Confidence 445556666666666666666666655432 123445555556666666666666666555543
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHH
Q 008265 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381 (572)
Q Consensus 302 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 381 (572)
.. .+...+..+...+...|++++|.+.+.+..... ........+..+...+...|++++
T Consensus 95 -----------------~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~ 153 (234)
T TIGR02521 95 -----------------NP-NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP---LYPQPARSLENAGLCALKAGDFDK 153 (234)
T ss_pred -----------------CC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc---ccccchHHHHHHHHHHHHcCCHHH
Confidence 21 133445555566666677777777777665421 011233455556666777777777
Q ss_pred HHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhh
Q 008265 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (572)
Q Consensus 382 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (572)
|...+.+..+.... +...+..+...+...|++++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+.
T Consensus 154 A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 154 AEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 77777776655221 3455666677777777777777777777665 23455556666666777777777777766654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.8e-08 Score=99.95 Aligned_cols=257 Identities=11% Similarity=0.017 Sum_probs=128.3
Q ss_pred hhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008265 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDAS 247 (572)
Q Consensus 168 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 247 (572)
.+.+++|+.+|++..+. .|.....|..+..++...+.. ..+...+++++|...+++.
T Consensus 274 ~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~---------------------g~~~~~~~~~~A~~~~~~A 330 (553)
T PRK12370 274 PYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQM---------------------GIFDKQNAMIKAKEHAIKA 330 (553)
T ss_pred HHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHc---------------------CCcccchHHHHHHHHHHHH
Confidence 35577888888877754 455544444333322211000 0011224456666666666
Q ss_pred HhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHH--HHHhcCChHHHHHHHHHHHHcCCCCCH
Q 008265 248 KKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN-IYVFNSL--MNVNAHDLKFTLEVYKNMQKLGVMADM 324 (572)
Q Consensus 248 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~l--l~~~~~~~~~a~~~~~~m~~~~~~~~~ 324 (572)
.+... -+...+..+...+...|++++|...|++..+.+ |+ ...+..+ +....|++++|...+++..+.... +.
T Consensus 331 l~ldP-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~ 406 (553)
T PRK12370 331 TELDH-NNPQALGLLGLINTIHSEYIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RA 406 (553)
T ss_pred HhcCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Ch
Confidence 55432 144555555556666666666666666666552 33 2222222 222346666666666666654332 12
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCc-hhhHH
Q 008265 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN-TITWS 402 (572)
Q Consensus 325 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~ 402 (572)
..+..++..+...|++++|...++++... ..| +...+..+..++...|+.++|.+.+.++... .|+ ....+
T Consensus 407 ~~~~~~~~~~~~~g~~eeA~~~~~~~l~~-----~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~ 479 (553)
T PRK12370 407 AAGITKLWITYYHTGIDDAIRLGDELRSQ-----HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVN 479 (553)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHHh-----ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHH
Confidence 22222333455566777777777666541 123 2334555666666677777777777665544 233 23334
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhcc
Q 008265 403 SLINACANAGLVEQAMHLFEEMLQA-GCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463 (572)
Q Consensus 403 ~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 463 (572)
.+...|...| ++|...++.+.+. ...+...-+..+ .+.-.|+.+.+... +++.+.+
T Consensus 480 ~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 480 LLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPL--VLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHH--HHHHHhhhHHHHHH-HHhhccc
Confidence 4444555555 3666655555431 112222222222 33345565555554 6665544
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.11 E-value=1e-07 Score=86.97 Aligned_cols=197 Identities=10% Similarity=0.001 Sum_probs=136.5
Q ss_pred cchHHHHHHHHhcCCChHHHHHhhhcC----CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 008265 191 LDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVC 266 (572)
Q Consensus 191 ~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 266 (572)
...+..+...+...|++++|...++.. |.+...+..+...+...|++++|.+.++...+... .+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHH
Confidence 356778899999999999999988763 55567888899999999999999999999887643 3556778888889
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 008265 267 GICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEI 346 (572)
Q Consensus 267 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 346 (572)
...|++++|.+.|++.......+. ....+..+...+...|++++|...
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~--------------------------------~~~~~~~l~~~~~~~g~~~~A~~~ 157 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQ--------------------------------PARSLENAGLCALKAGDFDKAEKY 157 (234)
T ss_pred HHcccHHHHHHHHHHHHhcccccc--------------------------------chHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999876421111 122333445556666677777776
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008265 347 YGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426 (572)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 426 (572)
+.+.... .+.+...+..+...+...|++++|.+.+++..+. ...+...+..+...+...|+.++|..+.+.+..
T Consensus 158 ~~~~~~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 158 LTRALQI-----DPQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHh-----CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 6666542 1223445666666666677777777777666654 222444555566666666777777666665543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.2e-08 Score=95.70 Aligned_cols=270 Identities=14% Similarity=0.116 Sum_probs=171.9
Q ss_pred CchhhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcC---
Q 008265 67 LSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELG--- 143 (572)
Q Consensus 67 p~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~--- 143 (572)
|.. ..+...+...|...|+++.|+.++++..+.-.....-..+.....+..+...|...+++++|..+|+++...-
T Consensus 196 P~~-~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 196 PER-LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred chH-HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 554 6777779999999999999999999987651000001122234445567778899999999999999987751
Q ss_pred CCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhH
Q 008265 144 VAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADIL 223 (572)
Q Consensus 144 ~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 223 (572)
.-++.. ....++.+....+.+.|++++|...++...+.--... ....+.-...
T Consensus 275 ~G~~h~---~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~------------------------~~~~~~v~~~ 327 (508)
T KOG1840|consen 275 FGEDHP---AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLL------------------------GASHPEVAAQ 327 (508)
T ss_pred cCCCCH---HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhh------------------------ccChHHHHHH
Confidence 112222 1223333333334567888888777766543210000 0000111245
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCCc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008265 224 FCNFVREFGKKRDLVSALRAYDASKKH---LSSPN----MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS 296 (572)
Q Consensus 224 ~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 296 (572)
++.+...|...+++++|..++....+. -+.++ ..+++.|-..|.+.|++++|.++|++....
T Consensus 328 l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~----------- 396 (508)
T KOG1840|consen 328 LSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQI----------- 396 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH-----------
Confidence 667788888888888888888755332 12222 358899999999999999999999888753
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH-HhCCCCCCH-HHHHHHHHHHH
Q 008265 297 LMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE-AKGVLKLDV-FTYSTIVKVFA 374 (572)
Q Consensus 297 ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~-~~~~~li~~~~ 374 (572)
.++.......-....++.+...|.+.++.++|.++|.+..... ..|.-.|++ .+|..|...|.
T Consensus 397 ---------------~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~ 461 (508)
T KOG1840|consen 397 ---------------LRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYR 461 (508)
T ss_pred ---------------HHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHH
Confidence 1111111111123456777788888888888888888776543 123223343 47888888888
Q ss_pred ccccHHHHHHHHHHHH
Q 008265 375 DAKWWQMALKVKEDML 390 (572)
Q Consensus 375 ~~g~~~~a~~~~~~m~ 390 (572)
+.|+++.|+++.+...
T Consensus 462 ~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 462 AQGNYEAAEELEEKVL 477 (508)
T ss_pred HcccHHHHHHHHHHHH
Confidence 8888888888877665
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.2e-07 Score=97.65 Aligned_cols=212 Identities=16% Similarity=0.085 Sum_probs=142.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHH---------hcCCHHHHHHHHHHHHhCCCCCC-HHHHHHH--HHHh
Q 008265 235 RDLVSALRAYDASKKHLSSPN-MYICRTIIDVCG---------ICGDYMKSRAIYEDLRSQNVTLN-IYVFNSL--MNVN 301 (572)
Q Consensus 235 g~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~---------~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~l--l~~~ 301 (572)
+++++|.+.|++..+. .|+ ...|..+..+|. ..+++++|...+++..+. .|+ ...+..+ +...
T Consensus 275 ~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l--dP~~~~a~~~lg~~~~~ 350 (553)
T PRK12370 275 YSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL--DHNNPQALGLLGLINTI 350 (553)
T ss_pred HHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHH
Confidence 3467888889888775 343 445555544433 224478899999988876 343 4444444 2234
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHccccHH
Q 008265 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF-TYSTIVKVFADAKWWQ 380 (572)
Q Consensus 302 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~ 380 (572)
.|++++|...|++..+.+.. +...+..+...+...|++++|...++...+ +.|+.. .+..++..+...|+++
T Consensus 351 ~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~------l~P~~~~~~~~~~~~~~~~g~~e 423 (553)
T PRK12370 351 HSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLK------LDPTRAAAGITKLWITYYHTGID 423 (553)
T ss_pred ccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh------cCCCChhhHHHHHHHHHhccCHH
Confidence 58899999999998886533 466777788888899999999999999887 345432 3333444566678899
Q ss_pred HHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHhCCHhHHHHHHHHh
Q 008265 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ-CCNILLQACVEACQFDRAFRLFRSW 459 (572)
Q Consensus 381 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m 459 (572)
+|+..+++..+....-+...+..+..++...|+.++|...+.++... .|+.. ..+.+...|...| ++|...++.+
T Consensus 424 eA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~l 499 (553)
T PRK12370 424 DAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREF 499 (553)
T ss_pred HHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHH
Confidence 99999988776532213445667777888899999999998887654 44433 3444445556666 4777777776
Q ss_pred hh
Q 008265 460 TL 461 (572)
Q Consensus 460 ~~ 461 (572)
.+
T Consensus 500 l~ 501 (553)
T PRK12370 500 LE 501 (553)
T ss_pred HH
Confidence 54
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.7e-05 Score=77.63 Aligned_cols=370 Identities=14% Similarity=0.052 Sum_probs=256.1
Q ss_pred hhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHh
Q 008265 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (572)
Q Consensus 123 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 202 (572)
.+...+.+.|.-++.+..+. -|. .+.+++ .|++...++.|..+++...+. -|.+...|.+-...--
T Consensus 386 AVelE~~~darilL~rAvec--cp~------s~dLwl----AlarLetYenAkkvLNkaRe~--iptd~~IWitaa~LEE 451 (913)
T KOG0495|consen 386 AVELEEPEDARILLERAVEC--CPQ------SMDLWL----ALARLETYENAKKVLNKAREI--IPTDREIWITAAKLEE 451 (913)
T ss_pred HHhccChHHHHHHHHHHHHh--ccc------hHHHHH----HHHHHHHHHHHHHHHHHHHhh--CCCChhHHHHHHHHHH
Confidence 33444455566666665554 221 333332 345568888888888888763 4666677877666667
Q ss_pred cCCChHHHHHhhhc----CCCch-----hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc--HHHHHHHHHHHHhcCC
Q 008265 203 NKPDVNLAIRYACI----VPRAD-----ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPN--MYICRTIIDVCGICGD 271 (572)
Q Consensus 203 ~~g~~~~a~~~~~~----~~~~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~g~ 271 (572)
.+|+.+...++.++ +..++ ..|-.=...|-..|.+--+..+......-|+.-. ..+|..--..|.+.+.
T Consensus 452 ~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~ 531 (913)
T KOG0495|consen 452 ANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPA 531 (913)
T ss_pred hcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcch
Confidence 78888888877655 22222 3444455667777878778888877777666432 3588888888999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHH--hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008265 272 YMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGE 349 (572)
Q Consensus 272 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 349 (572)
++-|..+|....+. ++-+...|...... ..|..++...+|++....-. -....|-....-+-..|+...|..++..
T Consensus 532 ~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p-kae~lwlM~ake~w~agdv~~ar~il~~ 609 (913)
T KOG0495|consen 532 IECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP-KAEILWLMYAKEKWKAGDVPAARVILDQ 609 (913)
T ss_pred HHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 99999999888765 23345556555444 34788888899998887533 3566777777888889999999999998
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 008265 350 VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429 (572)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 429 (572)
..+. .+.+...|-+.+..-..+.++++|..+|.+.... .|+...|..-+..---.+..++|.+++++..+.
T Consensus 610 af~~-----~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-- 680 (913)
T KOG0495|consen 610 AFEA-----NPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-- 680 (913)
T ss_pred HHHh-----CCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--
Confidence 8763 2345668999999999999999999999998875 567777776666666778999999999888875
Q ss_pred CCC-HHHHHHHHHHHHHhCCHhHHHHHHHHhhhcccccccccccCCchHHHHhhhhhccccccCCCCcccCCccchhhhh
Q 008265 430 EPN-SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKR 508 (572)
Q Consensus 430 ~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (572)
-|+ ...|..+.+.+-+.++++.|.+.|..=.+
T Consensus 681 fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k----------------------------------------------- 713 (913)
T KOG0495|consen 681 FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK----------------------------------------------- 713 (913)
T ss_pred CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc-----------------------------------------------
Confidence 444 46778888888899999999888864322
Q ss_pred cCCCCC-HHHHHHHHHHHhh--cHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCCccccc
Q 008265 509 FSFKPT-TTTYNILMKACCT--DYYRVKALMNEMRTVGLSP-NHISWTILIDACGGSGNVEGAL 568 (572)
Q Consensus 509 ~~~~p~-~~~~~~ll~a~~~--~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~ 568 (572)
..|+ +..|-.|.+---+ ..-+|..+++.-+..+ | |...|...|.+=.+.|+.+.|.
T Consensus 714 --~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN--Pk~~~lwle~Ir~ElR~gn~~~a~ 773 (913)
T KOG0495|consen 714 --KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN--PKNALLWLESIRMELRAGNKEQAE 773 (913)
T ss_pred --cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC--CCcchhHHHHHHHHHHcCCHHHHH
Confidence 1333 3344433332222 3457777777766543 4 4566777777777777776654
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.3e-06 Score=81.44 Aligned_cols=388 Identities=13% Similarity=0.086 Sum_probs=218.9
Q ss_pred HHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhh
Q 008265 75 ADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSG 154 (572)
Q Consensus 75 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ 154 (572)
-+-++.+...|++++|......++..++++ ..++.+-+-++++.++|++|+.+.+.-... .- ++..
T Consensus 16 ~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd--------~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~----~~~~ 81 (652)
T KOG2376|consen 16 LTDLNRHGKNGEYEEAVKTANKILSIVPDD--------EDAIRCKVVALIQLDKYEDALKLIKKNGAL--LV----INSF 81 (652)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHhcCCCc--------HhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hh----cchh
Confidence 334577788899999999999999887553 334555566688889999888555432211 11 1111
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCch-------------
Q 008265 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRAD------------- 221 (572)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------------- 221 (572)
+ +-++||.| +.+..|+|+..++ |..+.+..+...-.+.+.+.|++++|..+++.+..++
T Consensus 82 ~--fEKAYc~Y-rlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~ 153 (652)
T KOG2376|consen 82 F--FEKAYCEY-RLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLL 153 (652)
T ss_pred h--HHHHHHHH-HcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 1 35556553 5677888877776 3333443344444566777888888877776541110
Q ss_pred -------------------hHHHH---HHHHHHhcCCHHHHHHHHHHHHhcC-------------CCCcHH-HHHHHHHH
Q 008265 222 -------------------ILFCN---FVREFGKKRDLVSALRAYDASKKHL-------------SSPNMY-ICRTIIDV 265 (572)
Q Consensus 222 -------------------~~~~~---li~~~~~~g~~~~a~~~~~~m~~~~-------------~~~~~~-~~~~ll~~ 265 (572)
.+|.. ..-.+...|++.+|+++++...+.+ +.-+.. .---+...
T Consensus 154 a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayV 233 (652)
T KOG2376|consen 154 AVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYV 233 (652)
T ss_pred HHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHH
Confidence 12332 3445667899999999998872211 000111 12334556
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHH----HHHHHHHhc-CC-----------------hHHHHHHHHH---------
Q 008265 266 CGICGDYMKSRAIYEDLRSQNVTLNIYV----FNSLMNVNA-HD-----------------LKFTLEVYKN--------- 314 (572)
Q Consensus 266 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~----~~~ll~~~~-~~-----------------~~~a~~~~~~--------- 314 (572)
+...|+-++|..++...++... +|... -|.++.... .+ .+..+..+..
T Consensus 234 lQ~~Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N 312 (652)
T KOG2376|consen 234 LQLQGQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRN 312 (652)
T ss_pred HHHhcchHHHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 7788999999999999988753 34322 222222110 00 0001000000
Q ss_pred -----------------HHHcCCCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 008265 315 -----------------MQKLGVMADMASYNILLKACCLAG--NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD 375 (572)
Q Consensus 315 -----------------m~~~~~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 375 (572)
....-.......+.+++..+.+.. ....+..++...-+ +...-...+.-+++.....
T Consensus 313 ~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~----~~p~~s~~v~L~~aQl~is 388 (652)
T KOG2376|consen 313 NALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFAD----GHPEKSKVVLLLRAQLKIS 388 (652)
T ss_pred HHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc----cCCchhHHHHHHHHHHHHh
Confidence 000000111233444444433222 23444555544432 2111123355555666777
Q ss_pred cccHHHHHHHHH--------HHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHH----H
Q 008265 376 AKWWQMALKVKE--------DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA--GCEPNSQCCNILL----Q 441 (572)
Q Consensus 376 ~g~~~~a~~~~~--------~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li----~ 441 (572)
.|+++.|++++. .+.+.+..|.. ...+...+.+.++.+.|..++.+.... .-.+......+++ .
T Consensus 389 ~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~--V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~ 466 (652)
T KOG2376|consen 389 QGNPEVALEILSLFLESWKSSILEAKHLPGT--VGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAE 466 (652)
T ss_pred cCCHHHHHHHHHHHhhhhhhhhhhhccChhH--HHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhH
Confidence 888888888888 55555544443 444566666667666666666665431 0012222223332 2
Q ss_pred HHHHhCCHhHHHHHHHHhhhcccccccccccCCchHHHHhhhhhccccccCCCCcccCCccchhhhhcCCCCCHHHHHHH
Q 008265 442 ACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNIL 521 (572)
Q Consensus 442 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l 521 (572)
--.+.|+.++|..+++++.+.. .+|..+...+
T Consensus 467 f~lr~G~~~ea~s~leel~k~n------------------------------------------------~~d~~~l~~l 498 (652)
T KOG2376|consen 467 FKLRHGNEEEASSLLEELVKFN------------------------------------------------PNDTDLLVQL 498 (652)
T ss_pred HHHhcCchHHHHHHHHHHHHhC------------------------------------------------CchHHHHHHH
Confidence 3345688888888888877532 5789999999
Q ss_pred HHHHhh-cHHHHHHHHHHH
Q 008265 522 MKACCT-DYYRVKALMNEM 539 (572)
Q Consensus 522 l~a~~~-~~~~a~~~~~~m 539 (572)
+.+|+. +.+.|..+-..+
T Consensus 499 V~a~~~~d~eka~~l~k~L 517 (652)
T KOG2376|consen 499 VTAYARLDPEKAESLSKKL 517 (652)
T ss_pred HHHHHhcCHHHHHHHhhcC
Confidence 999998 888888876654
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.09 E-value=9.8e-09 Score=102.63 Aligned_cols=253 Identities=16% Similarity=0.145 Sum_probs=118.2
Q ss_pred HHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHh
Q 008265 134 GVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRY 213 (572)
Q Consensus 134 ~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 213 (572)
+++..+...|+.|+.. +|..++. +|+..|+.+.|- +|.-|.-...+... ..++.++.+..+.++.+.+.
T Consensus 11 nfla~~e~~gi~PnRv----tyqsLia---rYc~~gdieaat-if~fm~~ksLpv~e-~vf~~lv~sh~~And~Enpk-- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRV----TYQSLIA---RYCTKGDIEAAT-IFPFMEIKSLPVRE-GVFRGLVASHKEANDAENPK-- 79 (1088)
T ss_pred hHHHHHHHhcCCCchh----hHHHHHH---HHcccCCCcccc-chhhhhcccccccc-hhHHHHHhcccccccccCCC--
Confidence 3556666677777664 4554544 344467777666 66666554443332 44556666666666665554
Q ss_pred hhcCCCchhHHHHHHHHHHhcCCHHH---HHHHHHHH----HhcCCCCcHHHH--------------HHHHHHHHhcCCH
Q 008265 214 ACIVPRADILFCNFVREFGKKRDLVS---ALRAYDAS----KKHLSSPNMYIC--------------RTIIDVCGICGDY 272 (572)
Q Consensus 214 ~~~~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~m----~~~~~~~~~~~~--------------~~ll~~~~~~g~~ 272 (572)
.+...+|.+|..+|...||+.. +++.+..+ ...|+--....+ ...+....-.|-|
T Consensus 80 ----ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglw 155 (1088)
T KOG4318|consen 80 ----EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLW 155 (1088)
T ss_pred ----CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHH
Confidence 2223566677777777666544 11111111 111111000000 1112222223333
Q ss_pred HHHHHHHHHHHhCCC-CCCHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008265 273 MKSRAIYEDLRSQNV-TLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351 (572)
Q Consensus 273 ~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 351 (572)
+.+++++..+..... .|-.+ +++-+.-...-..++.+......-.|+..+|.+++++-.-.|+.+.|..++.+|+
T Consensus 156 aqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emk 231 (1088)
T KOG4318|consen 156 AQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMK 231 (1088)
T ss_pred HHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 333333333322110 01111 1332222222333333332221113566666666666666666666666666665
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcC
Q 008265 352 HLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412 (572)
Q Consensus 352 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 412 (572)
+ .| ++.+..-|-.|+-+ .++...+..+++.|.+.|+.|+..|+.--+..+..+|
T Consensus 232 e---~g-fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~ 285 (1088)
T KOG4318|consen 232 E---KG-FPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNG 285 (1088)
T ss_pred H---cC-CCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcch
Confidence 4 34 45555444444433 5555556666666666666666666655555554433
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.3e-06 Score=75.49 Aligned_cols=347 Identities=10% Similarity=-0.028 Sum_probs=189.7
Q ss_pred HHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHH
Q 008265 78 ASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKL 157 (572)
Q Consensus 78 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~ 157 (572)
+.-+..+.++..|+.+++.-...+-+-+ -..-..+...+...|++++|+.+|..+.+..-.|. -+.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE-------~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~------el~v 95 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEE-------DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPA------ELGV 95 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhh-------HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCc------ccch
Confidence 4566678899999999887764443321 11122345567788999999999998877543332 2233
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCH
Q 008265 158 LKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDL 237 (572)
Q Consensus 158 l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~ 237 (572)
.+.+|.-+ .|.+.+|..+-+.. |+++...-.|.....+.++-++-..+...+.....---+|.....-.-.+
T Consensus 96 nLAcc~Fy--Lg~Y~eA~~~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HY 167 (557)
T KOG3785|consen 96 NLACCKFY--LGQYIEAKSIAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHY 167 (557)
T ss_pred hHHHHHHH--HHHHHHHHHHHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHH
Confidence 33333333 68899998876643 34444445566777778888888887777766554444555555556678
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHH----hcC--------
Q 008265 238 VSALRAYDASKKHLSSPNMYICRTIID-VCGICGDYMKSRAIYEDLRSQNVTLNI-YVFNSLMNV----NAH-------- 303 (572)
Q Consensus 238 ~~a~~~~~~m~~~~~~~~~~~~~~ll~-~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~----~~~-------- 303 (572)
++|.+++......+ |+-...|.-+. +|.+..-++-+.+++.-..+. -||. ...|..... +.|
T Consensus 168 QeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k 243 (557)
T KOG3785|consen 168 QEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKK 243 (557)
T ss_pred HHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHH
Confidence 99999999887743 45555554443 456666777777777766554 2442 222222111 111
Q ss_pred -------------------------ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCC
Q 008265 304 -------------------------DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV 358 (572)
Q Consensus 304 -------------------------~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 358 (572)
+.+.|++++-.+.+. -+..--.++--|.+.++..+|..+.+++.-
T Consensus 244 ~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P------ 313 (557)
T KOG3785|consen 244 ELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDP------ 313 (557)
T ss_pred HHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCC------
Confidence 222333333222221 112233344557788888888888776532
Q ss_pred CCCCHHHHHHHHHHH-----HccccHHHHHHHHHHHHHCCCCCchhh-HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 008265 359 LKLDVFTYSTIVKVF-----ADAKWWQMALKVKEDMLSAGVTPNTIT-WSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432 (572)
Q Consensus 359 ~~~~~~~~~~li~~~-----~~~g~~~~a~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 432 (572)
..|-.+....++.+- .....+.-|.+.|+..-+.+..-|.+. -.++..++.-..++++++.+++.+...=...|
T Consensus 314 ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD 393 (557)
T KOG3785|consen 314 TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDD 393 (557)
T ss_pred CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 223333322222221 112234556666665555544333221 23344444444455555555555554322222
Q ss_pred HHHHHHHHHHHHHhCCHhHHHHHHHHhh
Q 008265 433 SQCCNILLQACVEACQFDRAFRLFRSWT 460 (572)
Q Consensus 433 ~~~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (572)
...| .+.++.+..|++.+|.++|-++.
T Consensus 394 ~Fn~-N~AQAk~atgny~eaEelf~~is 420 (557)
T KOG3785|consen 394 DFNL-NLAQAKLATGNYVEAEELFIRIS 420 (557)
T ss_pred hhhh-HHHHHHHHhcChHHHHHHHhhhc
Confidence 2222 34455555666666666654443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.1e-05 Score=75.73 Aligned_cols=322 Identities=10% Similarity=0.069 Sum_probs=206.0
Q ss_pred hhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHh
Q 008265 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (572)
Q Consensus 123 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 202 (572)
-..++++..|..+|+........ .+.++++..---.+...+..|..+++..... -|.--..|..-+.+--
T Consensus 83 Eesq~e~~RARSv~ERALdvd~r--------~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE 152 (677)
T KOG1915|consen 83 EESQKEIQRARSVFERALDVDYR--------NITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEE 152 (677)
T ss_pred HHhHHHHHHHHHHHHHHHhcccc--------cchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHH
Confidence 34567788999999988775311 2333444333334577888888888887653 3433345666666667
Q ss_pred cCCChHHHHHhhhc---CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 008265 203 NKPDVNLAIRYACI---VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIY 279 (572)
Q Consensus 203 ~~g~~~~a~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 279 (572)
..|++..|.++|.. ..++...|.+.|..=.+-+.++.|..+|+...- +.|++..|--..+.=-++|+...|..+|
T Consensus 153 ~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred HhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 78999999999987 366678999999999999999999999998876 4689999988888888899999888888
Q ss_pred HHHHhC-CC-CCCHHHHHHHHHH--hcCChHHHHHHHHHH----------------------------------------
Q 008265 280 EDLRSQ-NV-TLNIYVFNSLMNV--NAHDLKFTLEVYKNM---------------------------------------- 315 (572)
Q Consensus 280 ~~m~~~-g~-~p~~~~~~~ll~~--~~~~~~~a~~~~~~m---------------------------------------- 315 (572)
+...+. |- .-+...+.+.... .++.++.|..+|+-.
T Consensus 231 erAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~q 310 (677)
T KOG1915|consen 231 ERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQ 310 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhH
Confidence 877654 11 0011122221111 112233332222222
Q ss_pred ----HHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHH--HHHHHHH-----HH---HccccHHH
Q 008265 316 ----QKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF--TYSTIVK-----VF---ADAKWWQM 381 (572)
Q Consensus 316 ----~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~li~-----~~---~~~g~~~~ 381 (572)
++.+ +.|-.+|-..+..-...|+.+...++|+.... + ++|-.. .|.-.|- ++ ....+.+.
T Consensus 311 YE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIa----n-vpp~~ekr~W~RYIYLWinYalyeEle~ed~er 384 (677)
T KOG1915|consen 311 YEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIA----N-VPPASEKRYWRRYIYLWINYALYEELEAEDVER 384 (677)
T ss_pred HHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHc----c-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 2211 23455666666666667777777777777764 1 334211 1221111 11 23567777
Q ss_pred HHHHHHHHHHCCCCCchhhHHHHHHHHH----HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHH
Q 008265 382 ALKVKEDMLSAGVTPNTITWSSLINACA----NAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457 (572)
Q Consensus 382 a~~~~~~m~~~g~~p~~~~~~~li~~~~----~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 457 (572)
+.++++...+. ++-...||..+--.|+ ++.++..|.+++.... |..|-..+|...|..=.+.+++|.+..+++
T Consensus 385 tr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYE 461 (677)
T KOG1915|consen 385 TRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYE 461 (677)
T ss_pred HHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 77777777663 2334455555444443 4567777777777655 457888888888888888888888888888
Q ss_pred Hhhhcccc
Q 008265 458 SWTLSKTQ 465 (572)
Q Consensus 458 ~m~~~~~~ 465 (572)
+..+.++.
T Consensus 462 kfle~~Pe 469 (677)
T KOG1915|consen 462 KFLEFSPE 469 (677)
T ss_pred HHHhcChH
Confidence 88776543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2e-07 Score=91.71 Aligned_cols=261 Identities=14% Similarity=0.104 Sum_probs=159.6
Q ss_pred HHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHH-HHHHHhhhhhHHHHHHHHHHHHhCCCCCccc
Q 008265 113 LEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKN-ECQRLLDSGEVEMFVGLMEVLEEFRLPVKEL 191 (572)
Q Consensus 113 ~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~-~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 191 (572)
..++..+...|...|+++.|..++++..+.-..-.. .....+...+. ....+...+++++|..+|++++....
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G-~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e----- 272 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSG-LKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIRE----- 272 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccC-ccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH-----
Confidence 445555888899999999999999887765000000 01112222232 33344557888999988888765321
Q ss_pred chHHHHHHHHhcCCChHHHHHhhhcC-CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHh---c--CCC-CcH-HHHHHHH
Q 008265 192 DEEFRIVQLCVNKPDVNLAIRYACIV-PRADILFCNFVREFGKKRDLVSALRAYDASKK---H--LSS-PNM-YICRTII 263 (572)
Q Consensus 192 ~~~~~ll~~~~~~g~~~~a~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~--~~~-~~~-~~~~~ll 263 (572)
.+|... |....+++.|...|.+.|++++|...++...+ . |.. |.+ ..++.+.
T Consensus 273 --------------------~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~ 332 (508)
T KOG1840|consen 273 --------------------EVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELA 332 (508)
T ss_pred --------------------HhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHH
Confidence 011111 11126777778888888888888777765432 1 111 222 2455666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHH
Q 008265 264 DVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLA 343 (572)
Q Consensus 264 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a 343 (572)
..|...+++++|..++....+. +.......-.--..+++.|...|.+.|++++|
T Consensus 333 ~~~~~~~~~Eea~~l~q~al~i--------------------------~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea 386 (508)
T KOG1840|consen 333 AILQSMNEYEEAKKLLQKALKI--------------------------YLDAPGEDNVNLAKIYANLAELYLKMGKYKEA 386 (508)
T ss_pred HHHHHhcchhHHHHHHHHHHHH--------------------------HHhhccccchHHHHHHHHHHHHHHHhcchhHH
Confidence 6777778888888887754432 22111110011245788999999999999999
Q ss_pred HHHHHHHHHHHHhCCC--CCC-HHHHHHHHHHHHccccHHHHHHHHHHHHH----CCC-CCch-hhHHHHHHHHHHcCCH
Q 008265 344 QEIYGEVKHLEAKGVL--KLD-VFTYSTIVKVFADAKWWQMALKVKEDMLS----AGV-TPNT-ITWSSLINACANAGLV 414 (572)
Q Consensus 344 ~~~~~~~~~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~-~p~~-~~~~~li~~~~~~g~~ 414 (572)
.++|+++...-+.+.- .+. ...++.|...|.+.+++.+|.++|.+... .|. .|+. .+|..|...|.+.|++
T Consensus 387 ~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~ 466 (508)
T KOG1840|consen 387 EELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNY 466 (508)
T ss_pred HHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccH
Confidence 9999998875433211 122 34667777888888888888887776542 222 1222 4566777777777777
Q ss_pred HHHHHHHHHHH
Q 008265 415 EQAMHLFEEML 425 (572)
Q Consensus 415 ~~a~~~~~~m~ 425 (572)
++|.++.+.+.
T Consensus 467 e~a~~~~~~~~ 477 (508)
T KOG1840|consen 467 EAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHH
Confidence 77777776654
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.2e-05 Score=73.83 Aligned_cols=318 Identities=16% Similarity=0.135 Sum_probs=207.4
Q ss_pred hhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcC
Q 008265 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNK 204 (572)
Q Consensus 125 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 204 (572)
..|++..|..+|..-.+. .|+...+.+.++.-+ +.+.++.|..+++...-.. +++..|..-..--.+.
T Consensus 153 ~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fEl-------RykeieraR~IYerfV~~H---P~v~~wikyarFE~k~ 220 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWMEW--EPDEQAWLSFIKFEL-------RYKEIERARSIYERFVLVH---PKVSNWIKYARFEEKH 220 (677)
T ss_pred HhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHH-------HhhHHHHHHHHHHHHheec---ccHHHHHHHHHHHHhc
Confidence 446777777777776665 676664444333332 2467777777777765422 2334455445555556
Q ss_pred CChHHHHHhhhcCC---Cch----hHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------------------------
Q 008265 205 PDVNLAIRYACIVP---RAD----ILFCNFVREFGKKRDLVSALRAYDASKKHL-------------------------- 251 (572)
Q Consensus 205 g~~~~a~~~~~~~~---~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-------------------------- 251 (572)
|++..|.+++.... .++ ..+.++...=.++..++.|.-+|.-..++-
T Consensus 221 g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIE 300 (677)
T KOG1915|consen 221 GNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIE 300 (677)
T ss_pred CcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhH
Confidence 66666655554321 111 222222222223333333333333222110
Q ss_pred -----------------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHH-----H-----hc
Q 008265 252 -----------------SSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI--YVFNSLMN-----V-----NA 302 (572)
Q Consensus 252 -----------------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~-----~-----~~ 302 (572)
-+-|-.+|--.++.--..|+.+...++|+..+.. ++|-. .-|.-.|. + -+
T Consensus 301 d~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ 379 (677)
T KOG1915|consen 301 DAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEA 379 (677)
T ss_pred HHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1224456666666667778888899999888865 34421 22332222 1 23
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----HcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcccc
Q 008265 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACC----LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378 (572)
Q Consensus 303 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 378 (572)
.+.+.+.++|+...+. ++....||.-+--+|+ +..++..|.+++..... ..|-..+|-..|..-.+.++
T Consensus 380 ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG------~cPK~KlFk~YIelElqL~e 452 (677)
T KOG1915|consen 380 EDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG------KCPKDKLFKGYIELELQLRE 452 (677)
T ss_pred hhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc------cCCchhHHHHHHHHHHHHhh
Confidence 6889999999988873 5556778777666655 56788899999988764 46888899999999899999
Q ss_pred HHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHhCCHhHHHHHHH
Q 008265 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG-CEPNSQCCNILLQACVEACQFDRAFRLFR 457 (572)
Q Consensus 379 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 457 (572)
+|.+..+++...+-+.. +..+|......=...|+.+.|..+|....+.. +......|.+.|+-=...|.++.|..+++
T Consensus 453 fDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYe 531 (677)
T KOG1915|consen 453 FDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYE 531 (677)
T ss_pred HHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHH
Confidence 99999999999988654 67888887777788899999999999988642 23345667777777778999999999999
Q ss_pred Hhhhcc
Q 008265 458 SWTLSK 463 (572)
Q Consensus 458 ~m~~~~ 463 (572)
++.+..
T Consensus 532 rlL~rt 537 (677)
T KOG1915|consen 532 RLLDRT 537 (677)
T ss_pred HHHHhc
Confidence 987643
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.3e-05 Score=75.48 Aligned_cols=408 Identities=13% Similarity=0.129 Sum_probs=243.4
Q ss_pred hhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchh
Q 008265 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (572)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 150 (572)
...|-..+..+.+.|++..-...|+..+..=+. +- .-.++.-.+.-.-..|-++-++.+|++-.+. .|..
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpv--tq----H~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~~-- 171 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPV--TQ----HDRIWDLYLKFVESHGLPETSIRVYRRYLKV--APEA-- 171 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCch--Hh----hccchHHHHHHHHhCCChHHHHHHHHHHHhc--CHHH--
Confidence 356666667777778888888888776654211 10 0122223334444667778899999888775 4432
Q ss_pred hhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCC-----CCcccchHHHHHHHHhcCCChH---HHHHhhhc----CC
Q 008265 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRL-----PVKELDEEFRIVQLCVNKPDVN---LAIRYACI----VP 218 (572)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~g~~~---~a~~~~~~----~~ 218 (572)
-...+.. +++.+++++|.+.+..++.... .+.+...|.-+-+...++.+.- ....+++. .+
T Consensus 172 ~eeyie~-------L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rft 244 (835)
T KOG2047|consen 172 REEYIEY-------LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFT 244 (835)
T ss_pred HHHHHHH-------HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCc
Confidence 1122222 2447999999999988765431 1334445665555554433222 12222322 22
Q ss_pred C-chhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc----------------C------CHHHH
Q 008265 219 R-ADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC----------------G------DYMKS 275 (572)
Q Consensus 219 ~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~----------------g------~~~~a 275 (572)
. -+..|+.|...|.+.|.+++|.++|++....- .+..-|+.+.++|+.- | +++-.
T Consensus 245 Dq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~ 322 (835)
T KOG2047|consen 245 DQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELH 322 (835)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHH
Confidence 2 24889999999999999999999999876642 2333344444444221 1 24445
Q ss_pred HHHHHHHHhCC-----------CCCCHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHHcC
Q 008265 276 RAIYEDLRSQN-----------VTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMA------DMASYNILLKACCLAG 338 (572)
Q Consensus 276 ~~~~~~m~~~g-----------~~p~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~------~~~~~~~ll~~~~~~g 338 (572)
+.-|+.+...+ -+-++..|..-+..+-++..+...++.+..+. +.| -...|..+.+.|-..|
T Consensus 323 ~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~ 401 (835)
T KOG2047|consen 323 MARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNG 401 (835)
T ss_pred HHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcC
Confidence 55566655432 12345566666666777788888888887653 222 1345778888899999
Q ss_pred ChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCC-----------------chhhH
Q 008265 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP-----------------NTITW 401 (572)
Q Consensus 339 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-----------------~~~~~ 401 (572)
+++.|..+|++..+..-.+ +.-=..+|..-...=.++.+++.|+++++.....--.| +...|
T Consensus 402 ~l~~aRvifeka~~V~y~~-v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiW 480 (835)
T KOG2047|consen 402 DLDDARVIFEKATKVPYKT-VEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIW 480 (835)
T ss_pred cHHHHHHHHHHhhcCCccc-hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHH
Confidence 9999999999887631000 00012355555555667788889998888765331111 12235
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhcccccccccccCCchHHHHh
Q 008265 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISN 481 (572)
Q Consensus 402 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~ 481 (572)
...++.--..|-++....+++.+.+..+.....+.| ..--+-.+..+++++++|++=...
T Consensus 481 s~y~DleEs~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~L------------------- 540 (835)
T KOG2047|consen 481 SMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISL------------------- 540 (835)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCcc-------------------
Confidence 555555566677888888888887755432222211 111233455678888888653211
Q ss_pred hhhhccccccCCCCcccCCccchhhhhcCCCCC-HHHHHHHHHHHhh-----cHHHHHHHHHHHHhCCCCCCH
Q 008265 482 MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT-TTTYNILMKACCT-----DYYRVKALMNEMRTVGLSPNH 548 (572)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~ll~a~~~-----~~~~a~~~~~~m~~~g~~p~~ 548 (572)
+. -|+ ...|+..|.-+.+ ..+.|..+|+...+ |.+|..
T Consensus 541 ---------------------------Fk-~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~ 584 (835)
T KOG2047|consen 541 ---------------------------FK-WPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEH 584 (835)
T ss_pred ---------------------------CC-CccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHH
Confidence 11 233 3578888877765 45899999999888 555543
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.3e-07 Score=81.60 Aligned_cols=193 Identities=10% Similarity=-0.046 Sum_probs=108.0
Q ss_pred HHHHHHHHhcCCChHHHHHhhhc----CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc
Q 008265 194 EFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC 269 (572)
Q Consensus 194 ~~~ll~~~~~~g~~~~a~~~~~~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 269 (572)
+..|-++|.+...++.|+.++.. .|.+.....-+.+.+-..++.++|.++|+...+.. +.++....++...|.-.
T Consensus 259 fllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~ 337 (478)
T KOG1129|consen 259 FLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYD 337 (478)
T ss_pred HHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccC
Confidence 33344444444444444443322 23332233335556666666777777776665542 23445555566666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-hcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCChHHHHHH
Q 008265 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV-NAHDLKFTLEVYKNMQKLGVMAD--MASYNILLKACCLAGNTVLAQEI 346 (572)
Q Consensus 270 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~ 346 (572)
++.+-|+..|+++.+-|+.....-.|+-+.+ +++.++.++.-|......--.|+ ...|-.+-......||+..|.+-
T Consensus 338 ~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rc 417 (478)
T KOG1129|consen 338 NNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRC 417 (478)
T ss_pred CChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHH
Confidence 7777777777777766654333333333443 34666666666666554332232 33465666666667777777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHC
Q 008265 347 YGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (572)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 392 (572)
|+..... -.-+...+|.|.-.-.+.|++++|..++......
T Consensus 418 frlaL~~-----d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 418 FRLALTS-----DAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhcc-----CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 7666541 1234556777666667777777777777766654
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.7e-06 Score=86.19 Aligned_cols=283 Identities=13% Similarity=0.081 Sum_probs=190.5
Q ss_pred hhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcC----CCchhHHHHHHHHHHhc-----CC
Q 008265 166 LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKK-----RD 236 (572)
Q Consensus 166 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~-----g~ 236 (572)
...|++++|++.++.-... -++...........+.+.|+.++|..++..+ |.+..-|..+..+..-. .+
T Consensus 15 ~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~ 92 (517)
T PF12569_consen 15 EEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDED 92 (517)
T ss_pred HHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccccccc
Confidence 4589999999999875443 2334344556788888999999998887664 55545555566655332 35
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHhc--CChHHHHHHHH
Q 008265 237 LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDY-MKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYK 313 (572)
Q Consensus 237 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~a~~~~~ 313 (572)
.+...++|+.+...- |.......+.=.+..-..+ ..+...+..+..+|+++- |+.+-..|. ....-...++.
T Consensus 93 ~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPsl---F~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 93 VEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSL---FSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred HHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchH---HHHHHHHHcChhHHHHHHHHHH
Confidence 777888888887653 3222222221111111122 345556667777786443 333333333 22333334444
Q ss_pred HHHH----cC----------CCCCHH--HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcc
Q 008265 314 NMQK----LG----------VMADMA--SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTIVKVFADA 376 (572)
Q Consensus 314 ~m~~----~~----------~~~~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~ 376 (572)
.... .+ -.|... ++..+.+.|...|++++|.+.+++... ..|+ +..|..-.+.+-+.
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~------htPt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE------HTPTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh------cCCCcHHHHHHHHHHHHHC
Confidence 4332 11 123443 345567778899999999999999987 3565 55888889999999
Q ss_pred ccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH--------HHHHHHHHHHhCC
Q 008265 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQC--------CNILLQACVEACQ 448 (572)
Q Consensus 377 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--------~~~li~~~~~~g~ 448 (572)
|++.+|.+.++..+..... |...-+..+..+.++|++++|.+++....+.+..|-... ......+|.+.|+
T Consensus 242 G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred CCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999988765 888888899999999999999999999987765443221 1445678999999
Q ss_pred HhHHHHHHHHhhhc
Q 008265 449 FDRAFRLFRSWTLS 462 (572)
Q Consensus 449 ~~~A~~~~~~m~~~ 462 (572)
+..|++-|..+.+.
T Consensus 321 ~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 321 YGLALKRFHAVLKH 334 (517)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999888776543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.7e-06 Score=84.84 Aligned_cols=285 Identities=14% Similarity=0.041 Sum_probs=188.4
Q ss_pred HhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHH
Q 008265 121 VKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQL 200 (572)
Q Consensus 121 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~ 200 (572)
..+...|++++|++.+..-... -+|.. ..+..-.. -+.+.|+.++|..+|..+.+.+ |++...|..+..+
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~--I~Dk~---~~~E~rA~---ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~ 81 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ--ILDKL---AVLEKRAE---LLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEA 81 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh--CCCHH---HHHHHHHH---HHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHH
Confidence 3456889999999999875554 23321 12222222 3345799999999999999864 6776666666666
Q ss_pred HhcCC-----ChHHHHHhhhcC----CCchhHHHHHHHHHHhcCCH-HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC
Q 008265 201 CVNKP-----DVNLAIRYACIV----PRADILFCNFVREFGKKRDL-VSALRAYDASKKHLSSPNMYICRTIIDVCGICG 270 (572)
Q Consensus 201 ~~~~g-----~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 270 (572)
..-.. ..+...++++.+ |.....-...+... ....+ ..+...+..+...|+++ +++.+-..|....
T Consensus 82 ~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~-~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~ 157 (517)
T PF12569_consen 82 LGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFL-EGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPE 157 (517)
T ss_pred HhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccC-CHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChh
Confidence 63222 455556666553 32221111112211 11222 34455566677777643 5667777777666
Q ss_pred CHHHHHHHHHHHHhC----C----------CCCCHHHHHHHHHH----hcCChHHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 008265 271 DYMKSRAIYEDLRSQ----N----------VTLNIYVFNSLMNV----NAHDLKFTLEVYKNMQKLGVMAD-MASYNILL 331 (572)
Q Consensus 271 ~~~~a~~~~~~m~~~----g----------~~p~~~~~~~ll~~----~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll 331 (572)
+.+-..+++...... + -.|....|....-+ +.|++++|++.+++.++.. |+ +..|..-.
T Consensus 158 K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~Ka 235 (517)
T PF12569_consen 158 KAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKA 235 (517)
T ss_pred HHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHH
Confidence 666666666665432 1 13445455544433 4489999999999998864 44 66788888
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhH--------HH
Q 008265 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW--------SS 403 (572)
Q Consensus 332 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~--------~~ 403 (572)
..+-+.|++.+|.+.++....+. .-|.+.-+-.+..+.++|++++|.+++....+.+..|-...+ .-
T Consensus 236 rilKh~G~~~~Aa~~~~~Ar~LD-----~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e 310 (517)
T PF12569_consen 236 RILKHAGDLKEAAEAMDEARELD-----LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETE 310 (517)
T ss_pred HHHHHCCCHHHHHHHHHHHHhCC-----hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHH
Confidence 99999999999999999999853 346667777888899999999999999999877654433222 34
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 008265 404 LINACANAGLVEQAMHLFEEMLQ 426 (572)
Q Consensus 404 li~~~~~~g~~~~a~~~~~~m~~ 426 (572)
...+|.+.|++..|++.|..+.+
T Consensus 311 ~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 311 CAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH
Confidence 55678899999888877776653
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.8e-07 Score=82.10 Aligned_cols=225 Identities=12% Similarity=0.064 Sum_probs=146.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-H--hc
Q 008265 226 NFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN-V--NA 302 (572)
Q Consensus 226 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~-~--~~ 302 (572)
.+..+|.+.|.+.+|+..|..-.+.. |-+.||-.+-+.|.+..+.+.|+.+|.+-.+. -|..+||..=+. . -.
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHH
Confidence 46677777777777777777666543 44456666777777777777777777776655 455555543322 2 22
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHH
Q 008265 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382 (572)
Q Consensus 303 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 382 (572)
++.+++.++++...+.... +......+...|.-.++++.|...|+.+.+++ .-+...|+.+.-+|.-.+++|-+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-----~~speLf~NigLCC~yaqQ~D~~ 377 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMG-----AQSPELFCNIGLCCLYAQQIDLV 377 (478)
T ss_pred HhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhc-----CCChHHHhhHHHHHHhhcchhhh
Confidence 5677777777777664322 44555555566666777777777777777753 34566777777777777777777
Q ss_pred HHHHHHHHHCCCCCch--hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhh
Q 008265 383 LKVKEDMLSAGVTPNT--ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (572)
Q Consensus 383 ~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (572)
+.-|......-..|+. ..|..+-....-.|++..|.+.|+.....+ .-+...++.|.-.-.+.|++++|..+++..+
T Consensus 378 L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 378 LPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 7777766654333433 346556666667778888888887776553 3345667777666677888888888877655
Q ss_pred h
Q 008265 461 L 461 (572)
Q Consensus 461 ~ 461 (572)
.
T Consensus 457 s 457 (478)
T KOG1129|consen 457 S 457 (478)
T ss_pred h
Confidence 4
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.1e-05 Score=77.48 Aligned_cols=280 Identities=13% Similarity=0.049 Sum_probs=211.6
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChH----HHHHhhhcCCCchhHHHHHHHHHH
Q 008265 157 LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVN----LAIRYACIVPRADILFCNFVREFG 232 (572)
Q Consensus 157 ~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~----~a~~~~~~~~~~~~~~~~li~~~~ 232 (572)
++......+-..+++.+..++.+.+.+.. |.....+..-|..+.+.|+.. -+.++.+..|....+|-++.-.|.
T Consensus 246 ll~~~ad~~y~~c~f~~c~kit~~lle~d--pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl 323 (611)
T KOG1173|consen 246 LLAEKADRLYYGCRFKECLKITEELLEKD--PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYL 323 (611)
T ss_pred HHHHHHHHHHHcChHHHHHHHhHHHHhhC--CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHH
Confidence 33333334455789999999999988753 444455556677777777655 456677778999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHhcCChHHHHH
Q 008265 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ--NVTLNIYVFNSLMNVNAHDLKFTLE 310 (572)
Q Consensus 233 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~a~~ 310 (572)
-.|+..+|.+.|.+....... =...|-.....|+-.|..|+|+..+...-+. |. --+..|..+=....++.+.|.+
T Consensus 324 ~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~-hlP~LYlgmey~~t~n~kLAe~ 401 (611)
T KOG1173|consen 324 MIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGC-HLPSLYLGMEYMRTNNLKLAEK 401 (611)
T ss_pred HhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCC-cchHHHHHHHHHHhccHHHHHH
Confidence 999999999999987553211 2357888899999999999999999877654 21 1234455555556689999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHccccHHHHHHHHHH
Q 008265 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG-VLKL-DVFTYSTIVKVFADAKWWQMALKVKED 388 (572)
Q Consensus 311 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~ 388 (572)
.|.+...... -|+...+-+.-.....+.+.+|...|.......+.- .-.+ -..+++.|..+|.+.+.+++|+..+++
T Consensus 402 Ff~~A~ai~P-~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~ 480 (611)
T KOG1173|consen 402 FFKQALAIAP-SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQK 480 (611)
T ss_pred HHHHHHhcCC-CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence 9998876533 367778888777778899999999999887432211 1111 344788999999999999999999999
Q ss_pred HHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008265 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444 (572)
Q Consensus 389 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 444 (572)
......+ |..++.++.-.|...|+++.|.+.|.+.... .|+..+-..++..+.
T Consensus 481 aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 481 ALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLKLAI 533 (611)
T ss_pred HHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHHHHH
Confidence 8877443 8889999999999999999999999998754 788877776666443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.78 E-value=3e-05 Score=75.79 Aligned_cols=201 Identities=13% Similarity=-0.016 Sum_probs=120.1
Q ss_pred hhHHHHHHHhHhhcCChhHHHHHHHHHHhhcC-ChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcch
Q 008265 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEG-NVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (572)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 149 (572)
...|..+...+...|+.+.+...+....+... +++. .+........+...|++++|..++++..+. .|+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~ 77 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATE------RERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDL 77 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcH
Confidence 55666677777777888887777777665433 2221 112222233467889999999999988776 45432
Q ss_pred hhhhhhHH-HHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcC----CCchhHH
Q 008265 150 FDGSGFKL-LKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILF 224 (572)
Q Consensus 150 ~~~~~~~~-l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~~~ 224 (572)
..+.. +.... .....+..+.+.+.++. .....|........+...+...|++++|.+.++.. |.+...+
T Consensus 78 ---~a~~~~~~~~~-~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~ 151 (355)
T cd05804 78 ---LALKLHLGAFG-LGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAV 151 (355)
T ss_pred ---HHHHHhHHHHH-hcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHH
Confidence 11111 00000 00113455555555543 11222333333344556777888888887776653 5555667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCcH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008265 225 CNFVREFGKKRDLVSALRAYDASKKHLS-SPNM--YICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (572)
Q Consensus 225 ~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 285 (572)
..+...+...|++++|...++...+... .++. ..|..+...+...|++++|.++|++....
T Consensus 152 ~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 152 HAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 7778888888888888888887765422 1222 34556777788888888888888887543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=8.2e-06 Score=76.88 Aligned_cols=63 Identities=10% Similarity=-0.033 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008265 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (572)
Q Consensus 222 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 285 (572)
..|+.+...+...|++++|.+.|+...+.... +...|..+..++...|++++|.+.|+...+.
T Consensus 99 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 99 DAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQD 161 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 44555555555555555555555555443211 2334444444455555555555555555443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.7e-05 Score=76.28 Aligned_cols=273 Identities=13% Similarity=0.031 Sum_probs=199.1
Q ss_pred HHHHhhhhHhhhhhCChhHHHHHHHHhhhc-CCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCccc
Q 008265 113 LEMVASGIVKSIREGRIDCVVGVLKKLNEL-GVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKEL 191 (572)
Q Consensus 113 ~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 191 (572)
.+.+..-...+...+++.+...+.+.+.+. ++.++ .+-+-|.++ .+.|+..+-..+=.+|.+. -|...
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~------~~~~~ia~l---~el~~~n~Lf~lsh~LV~~--yP~~a 312 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLP------CLPLHIACL---YELGKSNKLFLLSHKLVDL--YPSKA 312 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcc------hHHHHHHHH---HHhcccchHHHHHHHHHHh--CCCCC
Confidence 334445556677889999999999888776 23333 333334333 3346555555555555543 57888
Q ss_pred chHHHHHHHHhcCCChHHHHHhhhcCCC----chhHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCcHHHHHHHHHH
Q 008265 192 DEEFRIVQLCVNKPDVNLAIRYACIVPR----ADILFCNFVREFGKKRDLVSALRAYDASKKH--LSSPNMYICRTIIDV 265 (572)
Q Consensus 192 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~ 265 (572)
.+|-.+.--|...|+.++|.++|.+... =+..|-.+.+.|+-.|..+.|...+...-+. |... +..|. ---
T Consensus 313 ~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hl-P~LYl--gme 389 (611)
T KOG1173|consen 313 LSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHL-PSLYL--GME 389 (611)
T ss_pred cchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcc-hHHHH--HHH
Confidence 9999999999999999999999987422 2477888999999999999999999877654 2211 12332 234
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHH-Hh-cCChHHHHHHHHHHHH----cC--CCCCHHHHHHHHHHHHH
Q 008265 266 CGICGDYMKSRAIYEDLRSQNVTL-NIYVFNSLMN-VN-AHDLKFTLEVYKNMQK----LG--VMADMASYNILLKACCL 336 (572)
Q Consensus 266 ~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~-~~-~~~~~~a~~~~~~m~~----~~--~~~~~~~~~~ll~~~~~ 336 (572)
|.+.++++.|.++|.+.... -| |+...+-+-- +| .+.+.+|...|+.... .+ ...-..+++.|.++|.+
T Consensus 390 y~~t~n~kLAe~Ff~~A~ai--~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk 467 (611)
T KOG1173|consen 390 YMRTNNLKLAEKFFKQALAI--APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK 467 (611)
T ss_pred HHHhccHHHHHHHHHHHHhc--CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH
Confidence 67889999999999888754 44 4445544422 23 4789999998887652 11 11245678999999999
Q ss_pred cCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHH
Q 008265 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408 (572)
Q Consensus 337 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 408 (572)
.+.+++|+..|+....+ .+-+..++.++.-.|...|+++.|.+.|.+..-. .||..+-..++..+
T Consensus 468 l~~~~eAI~~~q~aL~l-----~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 468 LNKYEEAIDYYQKALLL-----SPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLKLA 532 (611)
T ss_pred HhhHHHHHHHHHHHHHc-----CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHHHH
Confidence 99999999999999875 3668889999999999999999999999998764 78877777776643
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.5e-05 Score=68.11 Aligned_cols=218 Identities=13% Similarity=0.114 Sum_probs=142.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcC-------ChHH
Q 008265 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH-------DLKF 307 (572)
Q Consensus 235 g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-------~~~~ 307 (572)
+.-+.|++++-.+.+. -|... .| ++--|.+.+++.+|..+.+++.-. .|-.+....+..+-.| ...-
T Consensus 268 rngEgALqVLP~L~~~--IPEAR-lN-L~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKi 341 (557)
T KOG3785|consen 268 RNGEGALQVLPSLMKH--IPEAR-LN-LIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKI 341 (557)
T ss_pred eCCccHHHhchHHHhh--ChHhh-hh-heeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHH
Confidence 3445566666555442 23322 23 344578999999999998887533 4555666666665332 2445
Q ss_pred HHHHHHHHHHcCCCCCHHH-HHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHH
Q 008265 308 TLEVYKNMQKLGVMADMAS-YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK 386 (572)
Q Consensus 308 a~~~~~~m~~~~~~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 386 (572)
|.+.|+..-+.+..-|... -.++...+.-..++++++-.+..++..- ...|...+ .+..+++..|++.+|+++|
T Consensus 342 AqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF----~NdD~Fn~-N~AQAk~atgny~eaEelf 416 (557)
T KOG3785|consen 342 AQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYF----TNDDDFNL-NLAQAKLATGNYVEAEELF 416 (557)
T ss_pred HHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCcchhhh-HHHHHHHHhcChHHHHHHH
Confidence 6666766655554434322 2344455556677888888888877532 33444444 4678999999999999999
Q ss_pred HHHHHCCCCCchhhH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHhCCHhHHHHHHHHhhhccc
Q 008265 387 EDMLSAGVTPNTITW-SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC-NILLQACVEACQFDRAFRLFRSWTLSKT 464 (572)
Q Consensus 387 ~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~ 464 (572)
-.+....++ |..+| ..|.++|.+++..+.|++++-.+.. ..+..+. ..+..-|-+++.+--|-+.|+.+...++
T Consensus 417 ~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 417 IRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred hhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 888766555 55555 5567789999999999887765542 2233333 3444568999999999999998877665
Q ss_pred ccc
Q 008265 465 QVA 467 (572)
Q Consensus 465 ~~~ 467 (572)
.+.
T Consensus 493 ~pE 495 (557)
T KOG3785|consen 493 TPE 495 (557)
T ss_pred Ccc
Confidence 443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.5e-05 Score=75.05 Aligned_cols=203 Identities=9% Similarity=-0.030 Sum_probs=137.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 008265 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN-IYVFNSLMNV 300 (572)
Q Consensus 222 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~ 300 (572)
..|..+...|...|+.++|...|+...+... .+...|+.+...+...|++++|.+.|+...+. .|+ ...|..+-.+
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~ 141 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 4566777888999999999999999888643 35789999999999999999999999999876 454 3444444333
Q ss_pred --hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcccc
Q 008265 301 --NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378 (572)
Q Consensus 301 --~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 378 (572)
..|++++|.+.|+...+.. |+..........+...++.++|...|.+.... ..++...+ .+...+ .|+
T Consensus 142 l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-----~~~~~~~~-~~~~~~--lg~ 211 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK-----LDKEQWGW-NIVEFY--LGK 211 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-----CCccccHH-HHHHHH--ccC
Confidence 4589999999999998754 33322222222344567899999999775531 23333222 233333 344
Q ss_pred HHH--HHHHHHHHHHCCC--C-CchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 008265 379 WQM--ALKVKEDMLSAGV--T-PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438 (572)
Q Consensus 379 ~~~--a~~~~~~m~~~g~--~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 438 (572)
.+. +++.+.+-.+..+ . .....|..+...+.+.|+.++|...|++..+.+ .||..-+..
T Consensus 212 ~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~~e~~~ 275 (296)
T PRK11189 212 ISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNFVEHRY 275 (296)
T ss_pred CCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchHHHHHH
Confidence 433 3333322112211 1 234689999999999999999999999999875 445554444
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.73 E-value=0.00036 Score=68.64 Aligned_cols=368 Identities=12% Similarity=0.092 Sum_probs=198.7
Q ss_pred hhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchh
Q 008265 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (572)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 150 (572)
..-|..+.-.+....++++|+..|......+.+ . .+++..+-..-.+.|+++...+.-.++.+. .|+...
T Consensus 75 ~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d--N------~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra 144 (700)
T KOG1156|consen 75 HVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD--N------LQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRA 144 (700)
T ss_pred chhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC--c------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHH
Confidence 344444444444456777777777777765333 2 222333323334566666666666555554 333321
Q ss_pred hhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHH------HHHHHhcCCChHHHHHhhhcCCCch---
Q 008265 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFR------IVQLCVNKPDVNLAIRYACIVPRAD--- 221 (572)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~------ll~~~~~~g~~~~a~~~~~~~~~~~--- 221 (572)
+...+ .- ..--.|+...|..+++...+....+.+...+.. -.....+.|..++|++.+....+..
T Consensus 145 ~w~~~---Av---s~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dk 218 (700)
T KOG1156|consen 145 SWIGF---AV---AQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDK 218 (700)
T ss_pred HHHHH---HH---HHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHH
Confidence 11111 11 111257888888888887765532223233221 2344556777777777766544332
Q ss_pred -hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHH-HHHHHhcCCHHHHH-HHHHHHHhCCCCCCH-HHHHHH
Q 008265 222 -ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTI-IDVCGICGDYMKSR-AIYEDLRSQNVTLNI-YVFNSL 297 (572)
Q Consensus 222 -~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l-l~~~~~~g~~~~a~-~~~~~m~~~g~~p~~-~~~~~l 297 (572)
..-.+-...+.+.+++++|..++..+..+. ||...|... ..++.+-.+.-+++ .+|....+. .|.. ..-..=
T Consensus 219 la~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlp 294 (700)
T KOG1156|consen 219 LAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLP 294 (700)
T ss_pred HHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--Ccccccchhcc
Confidence 233345667778888888888888887753 555555444 34443333333333 556555443 1111 000111
Q ss_pred HHHhcC-C-hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH-HhCC---------CCCCHHH
Q 008265 298 MNVNAH-D-LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE-AKGV---------LKLDVFT 365 (572)
Q Consensus 298 l~~~~~-~-~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~---------~~~~~~~ 365 (572)
+....+ + .+..-.++..+.+.|+++ ++..+...|-.-...+-.+++.-.+...- ..|. -+|+...
T Consensus 295 lsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~Pttll 371 (700)
T KOG1156|consen 295 LSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLL 371 (700)
T ss_pred HHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHH
Confidence 111111 2 233344555666666653 33333333332222221222222222110 0100 1455555
Q ss_pred HH--HHHHHHHccccHHHHHHHHHHHHHCCCCCch-hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008265 366 YS--TIVKVFADAKWWQMALKVKEDMLSAGVTPNT-ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442 (572)
Q Consensus 366 ~~--~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 442 (572)
|+ .++..|-+.|+++.|+..++....+ .|+. ..|..-.+.+...|++++|..++++..+.. .+|...=.--..-
T Consensus 372 Wt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKY 448 (700)
T KOG1156|consen 372 WTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKY 448 (700)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHH
Confidence 54 4566778889999999998888876 6665 345556677888899999999998888765 4555443344555
Q ss_pred HHHhCCHhHHHHHHHHhhhccc
Q 008265 443 CVEACQFDRAFRLFRSWTLSKT 464 (572)
Q Consensus 443 ~~~~g~~~~A~~~~~~m~~~~~ 464 (572)
..+.++.++|.++.....+.|.
T Consensus 449 mLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 449 MLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHccccHHHHHHHHHhhhccc
Confidence 6677888888888888777663
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.71 E-value=0.00025 Score=65.90 Aligned_cols=233 Identities=10% Similarity=0.082 Sum_probs=118.7
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHH
Q 008265 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMY-ICRTIIDVCGICGDYMKSRAIYEDLRSQN-VTLNIYVF 294 (572)
Q Consensus 217 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~ 294 (572)
++.+......+...+...|+.++|...|+...-. .|+.. ........+.+.|+++....+...+.... ........
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV 305 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFV 305 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhh
Confidence 4555566667777777777777777777766542 23221 11111222356667777666666665431 11111111
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008265 295 NSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374 (572)
Q Consensus 295 ~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 374 (572)
..-+.-+.++++.|+.+-.+.++.+.. +...+-.=...+...|+.++|.-.|+....+ -+-+...|.-|+.+|.
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L-----ap~rL~~Y~GL~hsYL 379 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQML-----APYRLEIYRGLFHSYL 379 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhc-----chhhHHHHHHHHHHHH
Confidence 111112335677777777666654322 3333333334566677777777777777653 1345567777777777
Q ss_pred ccccHHHHHHHHHHHHHCCCCCchhhHHHHH-HHHH-HcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHhCCHhH
Q 008265 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLI-NACA-NAGLVEQAMHLFEEMLQAGCEPNS-QCCNILLQACVEACQFDR 451 (572)
Q Consensus 375 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li-~~~~-~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~ 451 (572)
..|.+.+|.-+-++..+. +.-+..+...+- ..|. ...--++|..+++.-... .|+. ...+.+..-|...|..+.
T Consensus 380 A~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D 456 (564)
T KOG1174|consen 380 AQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKD 456 (564)
T ss_pred hhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccch
Confidence 777777766655544332 111223322221 1111 111224555555554433 3332 334444555555666666
Q ss_pred HHHHHHHhh
Q 008265 452 AFRLFRSWT 460 (572)
Q Consensus 452 A~~~~~~m~ 460 (572)
+..++++-.
T Consensus 457 ~i~LLe~~L 465 (564)
T KOG1174|consen 457 IIKLLEKHL 465 (564)
T ss_pred HHHHHHHHH
Confidence 666665543
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.71 E-value=2e-08 Score=59.00 Aligned_cols=30 Identities=37% Similarity=0.681 Sum_probs=11.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCHhHHHHHHHH
Q 008265 429 CEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (572)
Q Consensus 429 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 458 (572)
+.||..||++||.+|++.|++++|.++|++
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 333333333333333333333333333333
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.5e-08 Score=58.58 Aligned_cols=34 Identities=38% Similarity=0.763 Sum_probs=32.2
Q ss_pred CCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008265 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425 (572)
Q Consensus 392 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 425 (572)
+|+.||..||++||.+|++.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4889999999999999999999999999999984
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.70 E-value=1e-06 Score=81.64 Aligned_cols=224 Identities=14% Similarity=0.135 Sum_probs=147.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH---HH
Q 008265 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL---MN 299 (572)
Q Consensus 223 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l---l~ 299 (572)
...-+.+++...|+++.+. .++... -.|.......+...+...++-+.+..-+++....+..++..++..+ +.
T Consensus 37 ~~~~~~Rs~iAlg~~~~vl---~ei~~~-~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~ 112 (290)
T PF04733_consen 37 RDFYQYRSYIALGQYDSVL---SEIKKS-SSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATIL 112 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHH---HHS-TT-SSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHH---HHhccC-CChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 3445677888888877544 344333 2566666555555444435556666655555444333233333222 22
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----
Q 008265 300 VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD---- 375 (572)
Q Consensus 300 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~---- 375 (572)
...|++++|++++..- .+.......+..|.+.++++.|.+.++.|.+ ...|. +...+..++..
T Consensus 113 ~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~------~~eD~-~l~qLa~awv~l~~g 179 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ------IDEDS-ILTQLAEAWVNLATG 179 (290)
T ss_dssp CCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC------CSCCH-HHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh------cCCcH-HHHHHHHHHHHHHhC
Confidence 2347899998887643 3677788889999999999999999999986 33343 34445555443
Q ss_pred cccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCH-hHHHH
Q 008265 376 AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQF-DRAFR 454 (572)
Q Consensus 376 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~ 454 (572)
.+.+.+|..+|+++.+. ..++..+.+.+..+....|++++|.+++.+....+ +-+..+...++.+....|+. +.+.+
T Consensus 180 ~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~ 257 (290)
T PF04733_consen 180 GEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAER 257 (290)
T ss_dssp TTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred chhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHH
Confidence 44689999999998765 45688889999999999999999999999987654 34567777888888888887 77888
Q ss_pred HHHHhhhcccc
Q 008265 455 LFRSWTLSKTQ 465 (572)
Q Consensus 455 ~~~~m~~~~~~ 465 (572)
++.+++...+.
T Consensus 258 ~l~qL~~~~p~ 268 (290)
T PF04733_consen 258 YLSQLKQSNPN 268 (290)
T ss_dssp HHHHCHHHTTT
T ss_pred HHHHHHHhCCC
Confidence 99988865543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.67 E-value=0.00049 Score=67.03 Aligned_cols=117 Identities=15% Similarity=0.009 Sum_probs=82.0
Q ss_pred HHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCc--hhHH-HHHHHHHHhcCCHHHH
Q 008265 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRA--DILF-CNFVREFGKKRDLVSA 240 (572)
Q Consensus 164 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~-~~li~~~~~~g~~~~a 240 (572)
.....|++++|.....+++..+ |++......-+-+..+.+.+++|+.+.+.-+.. ..++ .-=..+..+.++.++|
T Consensus 21 ~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dea 98 (652)
T KOG2376|consen 21 RHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEA 98 (652)
T ss_pred HhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHH
Confidence 4456799999999999998765 666666777777888899999999776654421 1111 1113334467899999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008265 241 LRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286 (572)
Q Consensus 241 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 286 (572)
+..++...+ .+..+...-...+.+.|++++|+++|+.+.+.+
T Consensus 99 lk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~ 140 (652)
T KOG2376|consen 99 LKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNN 140 (652)
T ss_pred HHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 998883322 133355555666788999999999999997764
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.64 E-value=0.00052 Score=67.56 Aligned_cols=380 Identities=13% Similarity=0.068 Sum_probs=226.2
Q ss_pred hhhhcccCCchhhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHH
Q 008265 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (572)
Q Consensus 59 ~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 138 (572)
+..++.+.|+. ...|..+.-.=+..|+++-....-....+. .|.. ...+.....++.-.|++..|..+++.
T Consensus 98 y~nAl~~~~dN-~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~------ra~w~~~Avs~~L~g~y~~A~~il~e 168 (700)
T KOG1156|consen 98 YRNALKIEKDN-LQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQ------RASWIGFAVAQHLLGEYKMALEILEE 168 (700)
T ss_pred HHHHHhcCCCc-HHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhh------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566665 566665555555566776666666666655 2221 22344555567778999999999998
Q ss_pred hhhcCC-CCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcC
Q 008265 139 LNELGV-APLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV 217 (572)
Q Consensus 139 m~~~~~-~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 217 (572)
..+... .|+...+..... ++--.+.+.+.|..+.|++-+..-...- .+....--.-...+.+.+++++|..++..+
T Consensus 169 f~~t~~~~~s~~~~e~se~-~Ly~n~i~~E~g~~q~ale~L~~~e~~i--~Dkla~~e~ka~l~~kl~~lEeA~~~y~~L 245 (700)
T KOG1156|consen 169 FEKTQNTSPSKEDYEHSEL-LLYQNQILIEAGSLQKALEHLLDNEKQI--VDKLAFEETKADLLMKLGQLEEAVKVYRRL 245 (700)
T ss_pred HHHhhccCCCHHHHHHHHH-HHHHHHHHHHcccHHHHHHHHHhhhhHH--HHHHHHhhhHHHHHHHHhhHHhHHHHHHHH
Confidence 887742 455443333332 2333345567888888888776543321 112122224456677889999998887664
Q ss_pred ----CCchhHHHHHHHHHHhcCCHHHHH-HHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 008265 218 ----PRADILFCNFVREFGKKRDLVSAL-RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292 (572)
Q Consensus 218 ----~~~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 292 (572)
|++-.-|-.+..++.+-.+.-++. .+|....+.- +.....-..=++......-.+..-.++..+.+.|+++--.
T Consensus 246 l~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y-~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~ 324 (700)
T KOG1156|consen 246 LERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY-PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFK 324 (700)
T ss_pred HhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC-cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhh
Confidence 444344444555554333333333 6776665531 1110000111111111222344556677777888765443
Q ss_pred HHHHHHHHhcCChHH----HHHHHHHHHHcC----------CCCCHHHHH--HHHHHHHHcCChHHHHHHHHHHHHHHHh
Q 008265 293 VFNSLMNVNAHDLKF----TLEVYKNMQKLG----------VMADMASYN--ILLKACCLAGNTVLAQEIYGEVKHLEAK 356 (572)
Q Consensus 293 ~~~~ll~~~~~~~~~----a~~~~~~m~~~~----------~~~~~~~~~--~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 356 (572)
...++..--- ..+- +..+...+...| -+|....|+ .+++.+-+.|+++.|...++....
T Consensus 325 dl~SLyk~p~-k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId---- 399 (700)
T KOG1156|consen 325 DLRSLYKDPE-KVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID---- 399 (700)
T ss_pred hhHHHHhchh-HhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc----
Confidence 3333322100 1111 112222221111 145555554 467788899999999999999886
Q ss_pred CCCCCCHH-HHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 008265 357 GVLKLDVF-TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQC 435 (572)
Q Consensus 357 ~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 435 (572)
..|+.+ .|.+=.+.+...|++++|..++++..+... +|...-.-......++.+.++|.++.....+.|. +..-
T Consensus 400 --HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~ 474 (700)
T KOG1156|consen 400 --HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVN 474 (700)
T ss_pred --cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhh
Confidence 356654 666667889999999999999999988753 4666655677778889999999999999988774 2222
Q ss_pred HHH----------HHHHHHHhCCHhHHHHHHHHhhh
Q 008265 436 CNI----------LLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 436 ~~~----------li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
... =..+|.+.|++.+|.+=|..+.+
T Consensus 475 ~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 475 NLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred hHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 111 13467788888888777766544
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.62 E-value=0.00016 Score=64.04 Aligned_cols=288 Identities=10% Similarity=0.062 Sum_probs=176.9
Q ss_pred HHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhh
Q 008265 73 YYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDG 152 (572)
Q Consensus 73 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 152 (572)
.++..+..+.+..++.+|++++..-.++..+ +...++.+...|....++..|-+.|+++... .|...
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~--------~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~--- 78 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPR--------SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELE--- 78 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCcc--------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHH---
Confidence 3567777788899999999999988777443 1444555666778888999999999998775 45332
Q ss_pred hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHH--HHhcCCChHHHHHhhhcCCCc--hhHHHHHH
Q 008265 153 SGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQ--LCVNKPDVNLAIRYACIVPRA--DILFCNFV 228 (572)
Q Consensus 153 ~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~--~~~~~g~~~~a~~~~~~~~~~--~~~~~~li 228 (572)
-|..+- ...+.+.+.+.+|+++...|.+. +....-..-++ .....+++..+..+.++.|.. ..+.+...
T Consensus 79 -qYrlY~--AQSLY~A~i~ADALrV~~~~~D~----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~g 151 (459)
T KOG4340|consen 79 -QYRLYQ--AQSLYKACIYADALRVAFLLLDN----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLG 151 (459)
T ss_pred -HHHHHH--HHHHHHhcccHHHHHHHHHhcCC----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccch
Confidence 333322 13455678999999998888652 11111111122 233578888889999998842 35666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-------------CHH--
Q 008265 229 REFGKKRDLVSALRAYDASKKH-LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL-------------NIY-- 292 (572)
Q Consensus 229 ~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p-------------~~~-- 292 (572)
-...+.|+++.|.+-|....+- |.. ....||..+.. .+.|+++.|++...++.++|++- |+.
T Consensus 152 CllykegqyEaAvqkFqaAlqvsGyq-pllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsv 229 (459)
T KOG4340|consen 152 CLLYKEGQYEAAVQKFQAALQVSGYQ-PLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSV 229 (459)
T ss_pred heeeccccHHHHHHHHHHHHhhcCCC-chhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcc
Confidence 7777899999999999988776 454 45678877764 56789999999999998887532 211
Q ss_pred ------HHHHHHHHh---------cCChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q 008265 293 ------VFNSLMNVN---------AHDLKFTLEVYKNMQK-LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK 356 (572)
Q Consensus 293 ------~~~~ll~~~---------~~~~~~a~~~~~~m~~-~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 356 (572)
.-+.++.++ .++.+.|.+.+-.|.- ..-..|++|...+.-.-. .+++-+..+-+.-+.+.
T Consensus 230 gNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~--- 305 (459)
T KOG4340|consen 230 GNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQ--- 305 (459)
T ss_pred cchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhc---
Confidence 112222221 1455666666655532 223344555443322111 23333333333333331
Q ss_pred CCCCCCHHHHHHHHHHHHccccHHHHHHHHHH
Q 008265 357 GVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388 (572)
Q Consensus 357 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 388 (572)
-+-...||..++-.||++.-++-|-.++.+
T Consensus 306 --nPfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 306 --NPFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred --CCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 122344666666666666666666666544
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=0.00021 Score=79.40 Aligned_cols=338 Identities=12% Similarity=0.001 Sum_probs=202.6
Q ss_pred hhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCC-----Ccc--c
Q 008265 119 GIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLP-----VKE--L 191 (572)
Q Consensus 119 ~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~--~ 191 (572)
....+...|+++.+..++..+.......+.. ....... .+...|+++++..+++.....--. +.. .
T Consensus 380 ~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~----l~~~~a~---~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~ 452 (903)
T PRK04841 380 HGWSLFNQGELSLLEECLNALPWEVLLENPR----LVLLQAW---LAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQA 452 (903)
T ss_pred hHHHHHhcCChHHHHHHHHhCCHHHHhcCcc----hHHHHHH---HHHHCCCHHHHHHHHHHHHHhccccCcccchhHHH
Confidence 3344566788888777777653221111111 1111111 112368999999988876543110 001 1
Q ss_pred chHHHHHHHHhcCCChHHHHHhhhcC----CCch-----hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CC--cHH
Q 008265 192 DEEFRIVQLCVNKPDVNLAIRYACIV----PRAD-----ILFCNFVREFGKKRDLVSALRAYDASKKHLS---SP--NMY 257 (572)
Q Consensus 192 ~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~~--~~~ 257 (572)
.....+...+...|++++|...++.. +... ...+.+...+...|+++.|...+.+.....- .+ ...
T Consensus 453 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~ 532 (903)
T PRK04841 453 EFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALW 532 (903)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHH
Confidence 11122344566799999998877653 2221 3455677778889999999999988754311 11 123
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHH--HHHhcCChHHHHHHHHHHHHc--CCCC--CH
Q 008265 258 ICRTIIDVCGICGDYMKSRAIYEDLRSQ----NVT--L-NIYVFNSL--MNVNAHDLKFTLEVYKNMQKL--GVMA--DM 324 (572)
Q Consensus 258 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~--p-~~~~~~~l--l~~~~~~~~~a~~~~~~m~~~--~~~~--~~ 324 (572)
.+..+...+...|++++|...+++.... +.. + ....+..+ +....|++++|...+.+.... ...+ ..
T Consensus 533 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~ 612 (903)
T PRK04841 533 SLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQL 612 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHH
Confidence 4556667788899999999998886542 221 1 11222222 222348999999988877542 1112 23
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHccccHHHHHHHHHHHHHCCCCCch---h
Q 008265 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT--YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT---I 399 (572)
Q Consensus 325 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~---~ 399 (572)
..+..+...+...|+.++|.+.+.................. ....+..+...|+.+.|.+.+............ .
T Consensus 613 ~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~ 692 (903)
T PRK04841 613 QCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQG 692 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHH
Confidence 34444566778899999999999998764322211111101 111234455688999999998775542211111 1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHHhCCHhHHHHHHHHhhhcc
Q 008265 400 TWSSLINACANAGLVEQAMHLFEEMLQA----GCEPN-SQCCNILLQACVEACQFDRAFRLFRSWTLSK 463 (572)
Q Consensus 400 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 463 (572)
.+..+..++...|+.++|...+++.... |..++ ..+...+..++.+.|+.++|...+.+..+..
T Consensus 693 ~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 693 QWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 1345677788999999999999988652 32222 2456666778889999999999999887644
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.00072 Score=65.16 Aligned_cols=121 Identities=11% Similarity=0.064 Sum_probs=77.7
Q ss_pred hhhcccCCchhhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHh
Q 008265 60 LSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKL 139 (572)
Q Consensus 60 ~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m 139 (572)
-+.++.+|.. +.+|..||+-+-.. ..+++.+.++++...-+. +..++-.-+..-...++++....+|.+.
T Consensus 10 ~~rie~nP~d-i~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~--------s~r~W~~yi~~El~skdfe~VEkLF~RC 79 (656)
T KOG1914|consen 10 RERIEENPYD-IDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPS--------SPRAWKLYIERELASKDFESVEKLFSRC 79 (656)
T ss_pred HHHHhcCCcc-HHHHHHHHHHHccC-CHHHHHHHHHHHhccCCC--------CcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4556667776 99999999988776 999999999999876432 1333444566777889999999999888
Q ss_pred hhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHH----HHHHHHH-HHhCCCCCcccchHHHHH
Q 008265 140 NELGVAPLELFDGSGFKLLKNECQRLLDSGEVEM----FVGLMEV-LEEFRLPVKELDEEFRIV 198 (572)
Q Consensus 140 ~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~----a~~~~~~-~~~~~~~~~~~~~~~~ll 198 (572)
...-+.-| ++.+++.....- .|.... ....|+- +.+.|+.+.+...|+.-+
T Consensus 80 LvkvLnlD------LW~lYl~YVR~~--~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi 135 (656)
T KOG1914|consen 80 LVKVLNLD------LWKLYLSYVRET--KGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYI 135 (656)
T ss_pred HHHHhhHh------HHHHHHHHHHHH--ccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHH
Confidence 77644433 444455433332 222222 2223332 445566666666666443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=0.00065 Score=68.63 Aligned_cols=318 Identities=15% Similarity=0.151 Sum_probs=175.9
Q ss_pred hhhHHHHHHHhHhhcCChhHHHHHHHHHHhh-cC--------ChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhh
Q 008265 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVS-EG--------NVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLN 140 (572)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~--------~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~ 140 (572)
+...|..+.+.+.+.++++-|.-.+-.|... |. +|+. .+ ..........|.+++|+.+|.+.+
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e------~e--akvAvLAieLgMlEeA~~lYr~ck 827 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEE------DE--AKVAVLAIELGMLEEALILYRQCK 827 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcc------hh--hHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4678888999999999998888877777532 21 1111 00 112222457788888888888876
Q ss_pred hcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCc
Q 008265 141 ELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRA 220 (572)
Q Consensus 141 ~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 220 (572)
+.. ++|-+ +.. .|.|++|.++-+.--+ +..+ .+|..-.+-+...++.+.|+++|++....
T Consensus 828 R~D----------LlNKl---yQs---~g~w~eA~eiAE~~DR--iHLr--~Tyy~yA~~Lear~Di~~AleyyEK~~~h 887 (1416)
T KOG3617|consen 828 RYD----------LLNKL---YQS---QGMWSEAFEIAETKDR--IHLR--NTYYNYAKYLEARRDIEAALEYYEKAGVH 887 (1416)
T ss_pred HHH----------HHHHH---HHh---cccHHHHHHHHhhccc--eehh--hhHHHHHHHHHhhccHHHHHHHHHhcCCh
Confidence 641 22222 212 6888888887664322 2222 34555556666677788888877663111
Q ss_pred ------------------------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------------------CCCcH
Q 008265 221 ------------------------DILFCNFVREFGKKRDLVSALRAYDASKKHL--------------------SSPNM 256 (572)
Q Consensus 221 ------------------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--------------------~~~~~ 256 (572)
...|.-.....-..|+++.|+.+|......- -.-|.
T Consensus 888 afev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~ 967 (1416)
T KOG3617|consen 888 AFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDK 967 (1416)
T ss_pred HHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccH
Confidence 1233334444445677777777776554321 01245
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 008265 257 YICRTIIDVCGICGDYMKSRAIYEDLRSQN--------VTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYN 328 (572)
Q Consensus 257 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g--------~~p~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 328 (572)
...-.+.+.|-..|++.+|..+|.+.+.-. -..+...+|..+..-..+.-.|-+.|++.. .. +.
T Consensus 968 AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g---~~-----~~ 1039 (1416)
T KOG3617|consen 968 AACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELG---GY-----AH 1039 (1416)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcc---hh-----hh
Confidence 566678888888899999988887764210 112334444443333334444555554432 11 22
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHH-----HH-HhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHC----------
Q 008265 329 ILLKACCLAGNTVLAQEIYGEVKH-----LE-AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA---------- 392 (572)
Q Consensus 329 ~ll~~~~~~g~~~~a~~~~~~~~~-----~~-~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------- 392 (572)
..+..|-+.|.+.+|.++--.-.+ +. ++-....|....+--.+.|+...++++|..++-..++-
T Consensus 1040 ~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~ 1119 (1416)
T KOG3617|consen 1040 KAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNR 1119 (1416)
T ss_pred HHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334456777777776664211111 00 01112345556666666677777777777665544321
Q ss_pred CC----------------CCch----hhHHHHHHHHHHcCCHHHHHHHHHH
Q 008265 393 GV----------------TPNT----ITWSSLINACANAGLVEQAMHLFEE 423 (572)
Q Consensus 393 g~----------------~p~~----~~~~~li~~~~~~g~~~~a~~~~~~ 423 (572)
|+ .|+. .....+...|.+.|.+..|-+-|.+
T Consensus 1120 nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1120 NVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQ 1170 (1416)
T ss_pred CCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhh
Confidence 11 1222 2345666677777777666555543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.2e-05 Score=65.36 Aligned_cols=199 Identities=12% Similarity=-0.046 Sum_probs=102.1
Q ss_pred hhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchh
Q 008265 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (572)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 150 (572)
..+...|.-.|...|+...|..-+++.++. +|+. ..++..+...|.+.|..+.|.+.|++..+. .|+.-
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~------~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~G- 103 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEH--DPSY------YLAHLVRAHYYQKLGENDLADESYRKALSL--APNNG- 103 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Cccc------HHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCcc-
Confidence 445556666666777777777777776666 3332 223333444556666666666666666554 33211
Q ss_pred hhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHH
Q 008265 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230 (572)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~ 230 (572)
.++|-+-. =++..|++++|...|+.....-.-+. ...+|..+.-+
T Consensus 104 --dVLNNYG~---FLC~qg~~~eA~q~F~~Al~~P~Y~~------------------------------~s~t~eN~G~C 148 (250)
T COG3063 104 --DVLNNYGA---FLCAQGRPEEAMQQFERALADPAYGE------------------------------PSDTLENLGLC 148 (250)
T ss_pred --chhhhhhH---HHHhCCChHHHHHHHHHHHhCCCCCC------------------------------cchhhhhhHHH
Confidence 11111111 12335666666666665544321111 12455666666
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--hcCChHHH
Q 008265 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFT 308 (572)
Q Consensus 231 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~--~~~~~~~a 308 (572)
..+.|+.+.|.+.|.+..+.... .....-.+.....+.|++..|..+++.....+. ++..+.-..|.. ..|+.+.+
T Consensus 149 al~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a 226 (250)
T COG3063 149 ALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAA 226 (250)
T ss_pred HhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHH
Confidence 66666666666666665554322 123344555555666666666666666655543 444444333332 33555555
Q ss_pred HHHHHHHHH
Q 008265 309 LEVYKNMQK 317 (572)
Q Consensus 309 ~~~~~~m~~ 317 (572)
-+.=..+.+
T Consensus 227 ~~Y~~qL~r 235 (250)
T COG3063 227 QRYQAQLQR 235 (250)
T ss_pred HHHHHHHHH
Confidence 444444433
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.00065 Score=63.22 Aligned_cols=359 Identities=8% Similarity=0.007 Sum_probs=200.6
Q ss_pred HHHHhHhhcCChhHHHHHHHHHHhhcC---Ch---------hHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcC
Q 008265 76 DMASKLAKDGRLEEFAMIVESVVVSEG---NV---------SKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELG 143 (572)
Q Consensus 76 ~li~~~~~~g~~~~A~~~~~~m~~~~~---~p---------~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~ 143 (572)
.+++..-+...+..|.+.|........ .| .++-..+..+.....+..|...++-+.|+..+.......
T Consensus 48 yl~~~~~h~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~ 127 (564)
T KOG1174|consen 48 YLLNANYKERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTL 127 (564)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCccc
Confidence 344445555667777777777664321 11 112222334445556777777888888888887665543
Q ss_pred CCCcchhhhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHhCCCCCcccchHHHHHHHHh---cCCChHHHHHhhh-cCC
Q 008265 144 VAPLELFDGSGFKLLKNECQRLLDSG-EVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV---NKPDVNLAIRYAC-IVP 218 (572)
Q Consensus 144 ~~p~~~~~~~~~~~l~~~~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~---~~g~~~~a~~~~~-~~~ 218 (572)
-.| ..++.+.-... +.+ +.++....-+-+++- | ..... |.+.. -.|.-........ ..+
T Consensus 128 r~p-------~inlMla~l~~--~g~r~~~~vl~ykevvrec---p---~aL~~-i~~ll~l~v~g~e~~S~~m~~~~~~ 191 (564)
T KOG1174|consen 128 RSP-------RINLMLARLQH--HGSRHKEAVLAYKEVIREC---P---MALQV-IEALLELGVNGNEINSLVMHAATVP 191 (564)
T ss_pred cch-------hHHHHHHHHHh--ccccccHHHHhhhHHHHhc---c---hHHHH-HHHHHHHhhcchhhhhhhhhheecC
Confidence 333 23333221111 112 223333322222221 1 11111 11111 1111111111111 123
Q ss_pred CchhHHHHHHHHHH--hcCCHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---
Q 008265 219 RADILFCNFVREFG--KKRDLVSALRAYDASKKH-LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY--- 292 (572)
Q Consensus 219 ~~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--- 292 (572)
+........+.+++ ..++...|...+-.+... -++-|......+.+.+...|+.++|...|++.+.. .|+..
T Consensus 192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~M 269 (564)
T KOG1174|consen 192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAM 269 (564)
T ss_pred CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhH
Confidence 33334444444443 445555555555444332 35667889999999999999999999999998865 34332
Q ss_pred -HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008265 293 -VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371 (572)
Q Consensus 293 -~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~ 371 (572)
.|..++. .-|+++....+...+.... +-....|-.-........+++.|..+-++..+.. +.+...|-.-..
T Consensus 270 D~Ya~LL~-~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-----~r~~~alilKG~ 342 (564)
T KOG1174|consen 270 DLYAVLLG-QEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-----PRNHEALILKGR 342 (564)
T ss_pred HHHHHHHH-hccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-----cccchHHHhccH
Confidence 2333332 2356666666666655421 1234445444455566788899998888887631 223334444445
Q ss_pred HHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHH-hCCH
Q 008265 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL-QACVE-ACQF 449 (572)
Q Consensus 372 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li-~~~~~-~g~~ 449 (572)
.+...|+.++|.-.|+....... -+..+|..|+.+|...|++.+|.-+-++..+. +.-+..+...+. ..|.- ...-
T Consensus 343 lL~~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~r 420 (564)
T KOG1174|consen 343 LLIALERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMR 420 (564)
T ss_pred HHHhccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhH
Confidence 67778999999999999887621 26789999999999999999998887776543 233455554442 33332 2234
Q ss_pred hHHHHHHHHhhh
Q 008265 450 DRAFRLFRSWTL 461 (572)
Q Consensus 450 ~~A~~~~~~m~~ 461 (572)
++|.+++++-.+
T Consensus 421 EKAKkf~ek~L~ 432 (564)
T KOG1174|consen 421 EKAKKFAEKSLK 432 (564)
T ss_pred HHHHHHHHhhhc
Confidence 788888876543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.0013 Score=66.23 Aligned_cols=373 Identities=12% Similarity=0.029 Sum_probs=240.1
Q ss_pred hhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcch
Q 008265 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (572)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 149 (572)
+...|..+.-++.+.|++..+.+.|++...--.. ..+.+...-..+...|.-..|+.+++.-....-.|+..
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~--------~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~ 393 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG--------EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDI 393 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh--------hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcc
Confidence 4678888888889999999999999987643221 24445556667788888889999998766653234422
Q ss_pred hhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcc---cchHHHHHHHHhc----CCChH-------HHHHhhh
Q 008265 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKE---LDEEFRIVQLCVN----KPDVN-------LAIRYAC 215 (572)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~ll~~~~~----~g~~~-------~a~~~~~ 215 (572)
..+-+..+.|.. +.+.++++++.-.+..+......+ ...+..+.-+|.. ..... ++++.++
T Consensus 394 ---s~~Lmasklc~e--~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale 468 (799)
T KOG4162|consen 394 ---SVLLMASKLCIE--RLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALE 468 (799)
T ss_pred ---hHHHHHHHHHHh--chhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHH
Confidence 233223333322 356777777766665542111100 1223333322222 12211 2333333
Q ss_pred cC----CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCC
Q 008265 216 IV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ-NVTLN 290 (572)
Q Consensus 216 ~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~p~ 290 (572)
.. +.+..+...+---|+..++++.|.+...+..+-+..-+...|..+.-.+...+++.+|+.+.+..... |..-.
T Consensus 469 ~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~ 548 (799)
T KOG4162|consen 469 EAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHV 548 (799)
T ss_pred HHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhh
Confidence 32 44445555566678888999999999999988866778899999999999999999999998876543 21000
Q ss_pred ------------------HHHHHHHHHHh-------------------c------CChHHHH-------HHHH-HHHHcC
Q 008265 291 ------------------IYVFNSLMNVN-------------------A------HDLKFTL-------EVYK-NMQKLG 319 (572)
Q Consensus 291 ------------------~~~~~~ll~~~-------------------~------~~~~~a~-------~~~~-~m~~~~ 319 (572)
..|...++... + .+..++. .+.. +....|
T Consensus 549 l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~ 628 (799)
T KOG4162|consen 549 LMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAG 628 (799)
T ss_pred hchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcc
Confidence 01111111110 0 0111111 1111 001111
Q ss_pred ---------C--CCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHH
Q 008265 320 ---------V--MAD------MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382 (572)
Q Consensus 320 ---------~--~~~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 382 (572)
+ .|+ ...|......+.+.+..++|...+.+...+ .......|......+...|++++|
T Consensus 629 se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-----~~l~~~~~~~~G~~~~~~~~~~EA 703 (799)
T KOG4162|consen 629 SELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-----DPLSASVYYLRGLLLEVKGQLEEA 703 (799)
T ss_pred cccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-----chhhHHHHHHhhHHHHHHHhhHHH
Confidence 0 112 123445666778888888888777777653 345566777777788889999999
Q ss_pred HHHHHHHHHCCCCCc-hhhHHHHHHHHHHcCCHHHHHH--HHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHh
Q 008265 383 LKVKEDMLSAGVTPN-TITWSSLINACANAGLVEQAMH--LFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (572)
Q Consensus 383 ~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~--~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (572)
.+.|...... .|+ +....++..++.+.|+..-|.. ++.++.+.+ +.+...|-.+...+.+.|+.+.|-+.|...
T Consensus 704 ~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 704 KEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 9999988876 444 4678899999999998887777 999999886 668899999999999999999999999876
Q ss_pred hhcc
Q 008265 460 TLSK 463 (572)
Q Consensus 460 ~~~~ 463 (572)
.+..
T Consensus 781 ~qLe 784 (799)
T KOG4162|consen 781 LQLE 784 (799)
T ss_pred Hhhc
Confidence 6543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.56 E-value=9.7e-05 Score=65.46 Aligned_cols=295 Identities=12% Similarity=0.037 Sum_probs=191.9
Q ss_pred hhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchh
Q 008265 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (572)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 150 (572)
....+.|...|-...++..|...++++....+.-..|... -..++.+.+.+.+|+.+...|.+. |+...
T Consensus 44 rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY--------~AQSLY~A~i~ADALrV~~~~~D~---~~L~~ 112 (459)
T KOG4340|consen 44 RAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLY--------QAQSLYKACIYADALRVAFLLLDN---PALHS 112 (459)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH--------HHHHHHHhcccHHHHHHHHHhcCC---HHHHH
Confidence 6777888888889999999999999998886654443321 234566889999999999888763 32221
Q ss_pred hhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCc-----hhHHH
Q 008265 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRA-----DILFC 225 (572)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~~~ 225 (572)
...-+...| . ...+++..+..+++++...+ +..+.+...-...+.|++++|.+-|+....- ...|+
T Consensus 113 ~~lqLqaAI----k-Yse~Dl~g~rsLveQlp~en----~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYn 183 (459)
T KOG4340|consen 113 RVLQLQAAI----K-YSEGDLPGSRSLVEQLPSEN----EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYN 183 (459)
T ss_pred HHHHHHHHH----h-cccccCcchHHHHHhccCCC----ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHH
Confidence 111111111 1 34688888999988875322 2333344444455789999999988875332 25676
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------------cH---------------HHHHHHHHHHHhcCCHHHHHH
Q 008265 226 NFVREFGKKRDLVSALRAYDASKKHLSSP-------------NM---------------YICRTIIDVCGICGDYMKSRA 277 (572)
Q Consensus 226 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~-------------~~---------------~~~~~ll~~~~~~g~~~~a~~ 277 (572)
..+..| +.|+++.|++...++.++|++- |+ ..+|.-...+.+.|+++.|.+
T Consensus 184 iALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~e 262 (459)
T KOG4340|consen 184 LALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQE 262 (459)
T ss_pred HHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHH
Confidence 665544 5699999999999998887531 11 223333344567799999999
Q ss_pred HHHHHHhC-CCCCCHHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 008265 278 IYEDLRSQ-NVTLNIYVFNSLMNVN-AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA 355 (572)
Q Consensus 278 ~~~~m~~~-g~~p~~~~~~~ll~~~-~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 355 (572)
.+-+|.-+ ....|++|.+.+.-.- .+++....+-+.-+.+.+. -...||..++-.||+..-++.|-.++.+-..+.-
T Consensus 263 aLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTy 341 (459)
T KOG4340|consen 263 ALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTY 341 (459)
T ss_pred HhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhH
Confidence 99998643 3456777776664443 3566666666666666654 4578999999999999999999998876433210
Q ss_pred hCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHH
Q 008265 356 KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390 (572)
Q Consensus 356 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 390 (572)
.-.+.+.|+.|=....-.-..+++++-+..+.
T Consensus 342 ---k~L~~Yly~LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 342 ---KFLTPYLYDLLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred ---HHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 11244445443322233445666665555443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.00034 Score=68.40 Aligned_cols=227 Identities=9% Similarity=-0.042 Sum_probs=136.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHH---HHH
Q 008265 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGI----CGDYMKSRAIYEDLRSQNVTLNIYVFNSL---MNV 300 (572)
Q Consensus 228 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~l---l~~ 300 (572)
...+...|++++|.++++...+..+ .+...+.. ...+.. .|..+.+.+.+.. ..+..|+......+ +..
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~ 125 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLLDDYP-RDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLE 125 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHH
Confidence 4456678999999999998877532 23334442 222333 3455555555544 12223443322222 233
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHcccc
Q 008265 301 NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV--FTYSTIVKVFADAKW 378 (572)
Q Consensus 301 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~ 378 (572)
..|++++|...+++..+.... +...+..+...+...|++++|...+++...... ..++. ..|..+...+...|+
T Consensus 126 ~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~---~~~~~~~~~~~~la~~~~~~G~ 201 (355)
T cd05804 126 EAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD---CSSMLRGHNWWHLALFYLERGD 201 (355)
T ss_pred HcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC---CCcchhHHHHHHHHHHHHHCCC
Confidence 458999999999999886533 566778888999999999999999998876311 01232 345678888999999
Q ss_pred HHHHHHHHHHHHHCCC-CCchhhH-H--HHHHHHHHcCCHHHHHHH--HHHHHHcCCC--CCHHHHHHHHHHHHHhCCHh
Q 008265 379 WQMALKVKEDMLSAGV-TPNTITW-S--SLINACANAGLVEQAMHL--FEEMLQAGCE--PNSQCCNILLQACVEACQFD 450 (572)
Q Consensus 379 ~~~a~~~~~~m~~~g~-~p~~~~~-~--~li~~~~~~g~~~~a~~~--~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~ 450 (572)
+++|.+++++...... .+..... + .++.-+...|....+.+. +......... ...........++...|+.+
T Consensus 202 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 281 (355)
T cd05804 202 YEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKD 281 (355)
T ss_pred HHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHH
Confidence 9999999999864422 1111111 1 233334444433333322 1111111111 11122235667788899999
Q ss_pred HHHHHHHHhhhc
Q 008265 451 RAFRLFRSWTLS 462 (572)
Q Consensus 451 ~A~~~~~~m~~~ 462 (572)
.|..+++.+...
T Consensus 282 ~a~~~L~~l~~~ 293 (355)
T cd05804 282 ALDKLLAALKGR 293 (355)
T ss_pred HHHHHHHHHHHH
Confidence 999999988653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.53 E-value=8.8e-06 Score=75.53 Aligned_cols=147 Identities=13% Similarity=0.066 Sum_probs=62.5
Q ss_pred HHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH----hcCCHHH
Q 008265 199 QLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCG----ICGDYMK 274 (572)
Q Consensus 199 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~----~~g~~~~ 274 (572)
.++...|++++|++++... .+-......+..|.+.++++.|.+.++.|.+. ..|. +...+..+|. ....+.+
T Consensus 110 ~i~~~~~~~~~AL~~l~~~-~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~-~l~qLa~awv~l~~g~e~~~~ 185 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG-GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDS-ILTQLAEAWVNLATGGEKYQD 185 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT-TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCH-HHHHHHHHHHHHHHTTTCCCH
T ss_pred HHHHHcCCHHHHHHHHHcc-CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcH-HHHHHHHHHHHHHhCchhHHH
Confidence 3444556666666665554 22234444555555566666666666555543 2222 1222222222 1223555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHH--hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHH
Q 008265 275 SRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT-VLAQEIYGEVK 351 (572)
Q Consensus 275 a~~~~~~m~~~g~~p~~~~~~~ll~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~ 351 (572)
|..+|+++.+. ..++..+.+.+..+ ..|++++|.+++.+..+.+.. +..+...++.+....|+. +.+.+.+.+++
T Consensus 186 A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 186 AFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp HHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 55555555433 22333333333222 224555555554444332221 333444444444444444 33444444444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.0014 Score=64.56 Aligned_cols=328 Identities=11% Similarity=0.118 Sum_probs=196.2
Q ss_pred HhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHH
Q 008265 116 VASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEF 195 (572)
Q Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 195 (572)
+...+..+..+|++-.-...|+..... .|-.. +......+++-... .+-.+-++.++++.++. .|. ...
T Consensus 105 wl~Ylq~l~~Q~~iT~tR~tfdrALra--Lpvtq-H~rIW~lyl~Fv~~---~~lPets~rvyrRYLk~--~P~---~~e 173 (835)
T KOG2047|consen 105 WLDYLQFLIKQGLITRTRRTFDRALRA--LPVTQ-HDRIWDLYLKFVES---HGLPETSIRVYRRYLKV--APE---ARE 173 (835)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHh--CchHh-hccchHHHHHHHHh---CCChHHHHHHHHHHHhc--CHH---HHH
Confidence 334455566778887778888776664 22111 22244444442222 56677888888887753 333 355
Q ss_pred HHHHHHhcCCChHHHHHhhhcCCCch-----------hHHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCCCcHHHHHH
Q 008265 196 RIVQLCVNKPDVNLAIRYACIVPRAD-----------ILFCNFVREFGKKRDL---VSALRAYDASKKHLSSPNMYICRT 261 (572)
Q Consensus 196 ~ll~~~~~~g~~~~a~~~~~~~~~~~-----------~~~~~li~~~~~~g~~---~~a~~~~~~m~~~~~~~~~~~~~~ 261 (572)
--+..++..++.++|.+-+..+.+++ ..|..+-...++.-+. -....++..+..+-..-=...|+.
T Consensus 174 eyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~S 253 (835)
T KOG2047|consen 174 EYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCS 253 (835)
T ss_pred HHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHH
Confidence 56777888888888888776654432 4455444444443332 234445555544321122468999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc------------------C------ChHHHHHHHHHHHH
Q 008265 262 IIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA------------------H------DLKFTLEVYKNMQK 317 (572)
Q Consensus 262 ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~------------------~------~~~~a~~~~~~m~~ 317 (572)
|.+-|.+.|.+++|.++|++....- .+..-|+.+..+|+ + +++-.+..|+.+..
T Consensus 254 LAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~ 331 (835)
T KOG2047|consen 254 LADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMN 331 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHh
Confidence 9999999999999999999987762 33333444433332 1 23344555555544
Q ss_pred cCC-----------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHccccHH
Q 008265 318 LGV-----------MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD------VFTYSTIVKVFADAKWWQ 380 (572)
Q Consensus 318 ~~~-----------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~ 380 (572)
... +.+...|..-+.. ..|+..+-...|.+..+. +.|- ...|..+.+.|-..|+++
T Consensus 332 rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-----vdP~ka~Gs~~~Lw~~faklYe~~~~l~ 404 (835)
T KOG2047|consen 332 RRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-----VDPKKAVGSPGTLWVEFAKLYENNGDLD 404 (835)
T ss_pred ccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-----cCcccCCCChhhHHHHHHHHHHhcCcHH
Confidence 321 1233444443332 346677778888877653 2222 346888899999999999
Q ss_pred HHHHHHHHHHHCCCCCc---hhhHHHHHHHHHHcCCHHHHHHHHHHHHHc-----------CCCC------CHHHHHHHH
Q 008265 381 MALKVKEDMLSAGVTPN---TITWSSLINACANAGLVEQAMHLFEEMLQA-----------GCEP------NSQCCNILL 440 (572)
Q Consensus 381 ~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----------~~~p------~~~~~~~li 440 (572)
.|..+|++..+...+-- ..+|-.-...=.+..+++.|+++.+..... +.++ +...|...+
T Consensus 405 ~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~ 484 (835)
T KOG2047|consen 405 DARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYA 484 (835)
T ss_pred HHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHH
Confidence 99999999887643311 123333334444667788888877766421 1111 233455556
Q ss_pred HHHHHhCCHhHHHHHHHHhhhcc
Q 008265 441 QACVEACQFDRAFRLFRSWTLSK 463 (572)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~m~~~~ 463 (572)
+.--..|-++....+|+++.+..
T Consensus 485 DleEs~gtfestk~vYdriidLr 507 (835)
T KOG2047|consen 485 DLEESLGTFESTKAVYDRIIDLR 507 (835)
T ss_pred HHHHHhccHHHHHHHHHHHHHHh
Confidence 66666778888888888877644
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00015 Score=62.15 Aligned_cols=199 Identities=13% Similarity=-0.009 Sum_probs=111.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 008265 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (572)
Q Consensus 222 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 301 (572)
.+...|.-.|.+.|+...|..-+++..++... +..+|..+...|.+.|+.+.|.+-|+...+. .|+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~----------- 101 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSL--APN----------- 101 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCC-----------
Confidence 34445666677777777777777776665321 3446666666667777777777666666554 222
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHH
Q 008265 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381 (572)
Q Consensus 302 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 381 (572)
+..+.|....-+|..|++++|...|+..... ....--..+|..+.-+..+.|+.+.
T Consensus 102 ---------------------~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~---P~Y~~~s~t~eN~G~Cal~~gq~~~ 157 (250)
T COG3063 102 ---------------------NGDVLNNYGAFLCAQGRPEEAMQQFERALAD---PAYGEPSDTLENLGLCALKAGQFDQ 157 (250)
T ss_pred ---------------------ccchhhhhhHHHHhCCChHHHHHHHHHHHhC---CCCCCcchhhhhhHHHHhhcCCchh
Confidence 3444455555555666666666666665541 1111122355555555556666666
Q ss_pred HHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhh
Q 008265 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (572)
Q Consensus 382 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (572)
|.+.|++..+.... ...+.-.+.....+.|++-.|..+++.....+. ++..+....|+.-...|+-+.+-+.=..+.
T Consensus 158 A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 158 AEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 66666665554222 223444555555566666666666666655543 555555555555556666665555544443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00074 Score=61.30 Aligned_cols=330 Identities=12% Similarity=0.067 Sum_probs=198.0
Q ss_pred hhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchh
Q 008265 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (572)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 150 (572)
..-...+-..+..+|++.+|+..|...++- +|+.|.. +..-...|...|+-..|+.=|.+..+. .||
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~--dp~~Y~a------ifrRaT~yLAmGksk~al~Dl~rVlel--KpD--- 104 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEG--DPNNYQA------IFRRATVYLAMGKSKAALQDLSRVLEL--KPD--- 104 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--CchhHHH------HHHHHHHHhhhcCCccchhhHHHHHhc--Ccc---
Confidence 344455677788889999999999888766 6665443 333445577888888888888877774 676
Q ss_pred hhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHH
Q 008265 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230 (572)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~ 230 (572)
.+..-+.....+.+.|.+++|..=|+.+++... .+ |...+|.+-+..+.+ .......+..
T Consensus 105 ---F~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~--s~--------------~~~~eaqskl~~~~e-~~~l~~ql~s 164 (504)
T KOG0624|consen 105 ---FMAARIQRGVVLLKQGELEQAEADFDQVLQHEP--SN--------------GLVLEAQSKLALIQE-HWVLVQQLKS 164 (504)
T ss_pred ---HHHHHHHhchhhhhcccHHHHHHHHHHHHhcCC--Cc--------------chhHHHHHHHHhHHH-HHHHHHHHHH
Confidence 334444444455678999999999998887542 11 111111111111110 0222334555
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHhcCChHHHH
Q 008265 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL-MNVNAHDLKFTL 309 (572)
Q Consensus 231 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~~~~a~ 309 (572)
+...|+...|+.....+.+-. +-|+..|..-..+|...|++..|+.-+....+..-..+...|.+- +.-..|+.+..+
T Consensus 165 ~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL 243 (504)
T KOG0624|consen 165 ASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSL 243 (504)
T ss_pred HhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHH
Confidence 667799999999999888853 237778888888999999999888777666554222222222211 111236777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHH
Q 008265 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM 389 (572)
Q Consensus 310 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 389 (572)
...++..+. .||...+-. ....+.+..+.++.|.+ ....++|.++++..+..
T Consensus 244 ~~iRECLKl--dpdHK~Cf~------~YKklkKv~K~les~e~--------------------~ie~~~~t~cle~ge~v 295 (504)
T KOG0624|consen 244 KEIRECLKL--DPDHKLCFP------FYKKLKKVVKSLESAEQ--------------------AIEEKHWTECLEAGEKV 295 (504)
T ss_pred HHHHHHHcc--CcchhhHHH------HHHHHHHHHHHHHHHHH--------------------HHhhhhHHHHHHHHHHH
Confidence 777766653 344432211 11112222223333322 22345566666666665
Q ss_pred HHCCCCCchhh---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhcc
Q 008265 390 LSAGVTPNTIT---WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463 (572)
Q Consensus 390 ~~~g~~p~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 463 (572)
.+.......+. +..+-.++...|++.+|++.-.+..+.. +.|+.++.--..+|.-..+++.|+.-|+...+.+
T Consensus 296 lk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 296 LKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 55532212233 3445566677788888888888877652 2347777777788888888888888888776544
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.00039 Score=69.24 Aligned_cols=240 Identities=16% Similarity=0.058 Sum_probs=131.0
Q ss_pred HHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 008265 197 IVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276 (572)
Q Consensus 197 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 276 (572)
-++++...|+-+.|-++-. ++----+.|..|.+.|...+|.+....=.. +..|......+..++.+..-+++|=
T Consensus 595 y~q~l~dt~qd~ka~elk~----sdgd~laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkag 668 (1636)
T KOG3616|consen 595 YLQALMDTGQDEKAAELKE----SDGDGLAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAG 668 (1636)
T ss_pred HHHHHHhcCchhhhhhhcc----ccCccHHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhh
Confidence 3445555566555544321 111223457778888887777665432111 2235555555555555555555555
Q ss_pred HHHHHHHhCCC------CCCHHHHHHHHHHhc-----CChHHHHHHHHH-HHHcCCCC----CHHHHHHHHHHHHHcCCh
Q 008265 277 AIYEDLRSQNV------TLNIYVFNSLMNVNA-----HDLKFTLEVYKN-MQKLGVMA----DMASYNILLKACCLAGNT 340 (572)
Q Consensus 277 ~~~~~m~~~g~------~p~~~~~~~ll~~~~-----~~~~~a~~~~~~-m~~~~~~~----~~~~~~~ll~~~~~~g~~ 340 (572)
++|+++..-.- +-|.+.-..-+.-++ -.+++++...-. ..+..-.. ........+.+......|
T Consensus 669 dlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaai~akew 748 (1636)
T KOG3616|consen 669 DLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIGAKEW 748 (1636)
T ss_pred hHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhhhhh
Confidence 55555532100 001111000010011 022233221111 11100000 011122345566677888
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHH
Q 008265 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHL 420 (572)
Q Consensus 341 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 420 (572)
.+|+.+++.+... +.-..-|..+...|+..|+++.|.++|.+.- .++-.|..|.+.|+|++|.++
T Consensus 749 ~kai~ildniqdq------k~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kl 813 (1636)
T KOG3616|consen 749 KKAISILDNIQDQ------KTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKL 813 (1636)
T ss_pred hhhHhHHHHhhhh------ccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHH
Confidence 8899888888752 3334467778889999999999999987642 256678889999999999888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHh
Q 008265 421 FEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (572)
Q Consensus 421 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (572)
-.+.. |-......|.+-..-+-+.|++.+|.++|-.+
T Consensus 814 a~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti 850 (1636)
T KOG3616|consen 814 AEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITI 850 (1636)
T ss_pred HHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEc
Confidence 77664 22334555666666677888888888877543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.0021 Score=66.62 Aligned_cols=217 Identities=13% Similarity=0.107 Sum_probs=130.6
Q ss_pred CCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008265 204 KPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283 (572)
Q Consensus 204 ~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 283 (572)
-++.+.|.++-++... +.+|+.+..+-.+.|.+.+|.+-|-+. -|...|..+++...+.|.|++-.+.+...+
T Consensus 1088 i~~ldRA~efAe~~n~-p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaR 1160 (1666)
T KOG0985|consen 1088 IGSLDRAYEFAERCNE-PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMAR 1160 (1666)
T ss_pred hhhHHHHHHHHHhhCC-hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3455555555444433 257777777777777777777666432 255677777888888888888777777777
Q ss_pred hCCCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCH
Q 008265 284 SQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV 363 (572)
Q Consensus 284 ~~g~~p~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 363 (572)
++.-.|...+--.+..+..++..+..+++ .-||......+.+-|...|.++.|.-+|.. +
T Consensus 1161 kk~~E~~id~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~-------------v 1220 (1666)
T KOG0985|consen 1161 KKVREPYIDSELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSN-------------V 1220 (1666)
T ss_pred HhhcCccchHHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHH-------------h
Confidence 66555555443333323334544433332 235666666667777777777766666543 3
Q ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008265 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443 (572)
Q Consensus 364 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 443 (572)
.-|.-|...+...|++..|.+.-++.. +..||--+-.+|...+.+.- .+|...++-....-..-++.-|
T Consensus 1221 SN~a~La~TLV~LgeyQ~AVD~aRKAn------s~ktWK~VcfaCvd~~EFrl-----AQiCGL~iivhadeLeeli~~Y 1289 (1666)
T KOG0985|consen 1221 SNFAKLASTLVYLGEYQGAVDAARKAN------STKTWKEVCFACVDKEEFRL-----AQICGLNIIVHADELEELIEYY 1289 (1666)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHhchhhhhH-----HHhcCceEEEehHhHHHHHHHH
Confidence 345566666777777777766655432 55677777677665544332 2333333334445566677777
Q ss_pred HHhCCHhHHHHHHHH
Q 008265 444 VEACQFDRAFRLFRS 458 (572)
Q Consensus 444 ~~~g~~~~A~~~~~~ 458 (572)
...|.+++...+++.
T Consensus 1290 q~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1290 QDRGYFEELISLLEA 1304 (1666)
T ss_pred HhcCcHHHHHHHHHh
Confidence 777777777776654
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.0012 Score=66.70 Aligned_cols=324 Identities=12% Similarity=0.105 Sum_probs=189.3
Q ss_pred hHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhc-CC--------CCcchh
Q 008265 80 KLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL-GV--------APLELF 150 (572)
Q Consensus 80 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~-~~--------~p~~~~ 150 (572)
.|...|+.+.|.+-.+.+.+ -.++.++.+.+++..++|-|.-.+..|... |. .|+.
T Consensus 737 fyvtiG~MD~AfksI~~IkS-------------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e-- 801 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIKS-------------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEE-- 801 (1416)
T ss_pred EEEEeccHHHHHHHHHHHhh-------------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcc--
Confidence 34556777777766665543 233555666777777777766666555443 11 1111
Q ss_pred hhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCc--hhHHHHHH
Q 008265 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRA--DILFCNFV 228 (572)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~li 228 (572)
+..-...+ ....|.+++|+.+|.+-.+ +..|-+.|-..|.+++|.++-+.-..- ..+|..-.
T Consensus 802 ~eakvAvL------AieLgMlEeA~~lYr~ckR----------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA 865 (1416)
T KOG3617|consen 802 DEAKVAVL------AIELGMLEEALILYRQCKR----------YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYA 865 (1416)
T ss_pred hhhHHHHH------HHHHhhHHHHHHHHHHHHH----------HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHH
Confidence 11111111 1236999999999987654 444556677889999999986542211 15666667
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc----------CC---------CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 008265 229 REFGKKRDLVSALRAYDASKKH----------LS---------SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL 289 (572)
Q Consensus 229 ~~~~~~g~~~~a~~~~~~m~~~----------~~---------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p 289 (572)
..+-..+|.+.|++.|++...+ .+ ..|...|.-.-..+-..|+.|.|+.+|...++
T Consensus 866 ~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----- 940 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----- 940 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----
Confidence 7777788888888887753211 10 12444555555555566888888888887764
Q ss_pred CHHHHHHHHH--HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH------HhCCCCC
Q 008265 290 NIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE------AKGVLKL 361 (572)
Q Consensus 290 ~~~~~~~ll~--~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~ 361 (572)
|-.+++ ++.|+.++|-++-++-. |...+-.+...|-..|++.+|..+|-...... +.+ ..
T Consensus 941 ----~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEn--d~ 1008 (1416)
T KOG3617|consen 941 ----YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEN--DM 1008 (1416)
T ss_pred ----hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc--CH
Confidence 233333 45588888887766532 66677778889999999999988887665421 111 11
Q ss_pred CHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHH--------HHHcCC--CC
Q 008265 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE--------MLQAGC--EP 431 (572)
Q Consensus 362 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~--------m~~~~~--~p 431 (572)
+...+|..+ .....+.-.|-+.|++.. .. +...+-.|-+.|.+.+|+++-=+ +....+ ..
T Consensus 1009 ~d~L~nlal--~s~~~d~v~aArYyEe~g---~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~s 1078 (1416)
T KOG3617|consen 1009 KDRLANLAL--MSGGSDLVSAARYYEELG---GY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGS 1078 (1416)
T ss_pred HHHHHHHHh--hcCchhHHHHHHHHHHcc---hh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCC
Confidence 222222211 112222333444444321 11 23334456777777777665322 122223 33
Q ss_pred CHHHHHHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 432 NSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 432 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
|....+--.+-|....++++|..++-..++
T Consensus 1079 Dp~ll~RcadFF~~~~qyekAV~lL~~ar~ 1108 (1416)
T KOG3617|consen 1079 DPKLLRRCADFFENNQQYEKAVNLLCLARE 1108 (1416)
T ss_pred CHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 556666666777788888998888866543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=9.6e-05 Score=73.54 Aligned_cols=212 Identities=13% Similarity=0.053 Sum_probs=119.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcC
Q 008265 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH 303 (572)
Q Consensus 224 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 303 (572)
-..+...+...|-...|..+|+++ ..|.-+|.+|...|+..+|..+..+..++ +||...|..+......
T Consensus 401 q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccC
Confidence 334566666667777777666654 34555666666667666666666666653 5666666666555443
Q ss_pred --ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHH
Q 008265 304 --DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381 (572)
Q Consensus 304 --~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 381 (572)
-+++|+++.+..-.. .-..+.......++++++.+.|+.-.++ -+.-..+|-.+-.+..+.+++..
T Consensus 470 ~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~-----nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEI-----NPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhc-----CccchhHHHhccHHHHHHhhhHH
Confidence 256666666554321 0011111112245666666666655543 12234456666666666666666
Q ss_pred HHHHHHHHHHCCCCCch-hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhh
Q 008265 382 ALKVKEDMLSAGVTPNT-ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (572)
Q Consensus 382 a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (572)
|.+.|...... .||. ..||.+-.+|.+.|+..+|...+.+..+.+ .-+...|...+....+.|.+++|++.+.++.
T Consensus 538 av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 538 AVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 66666665544 3333 456666666666666666666666666554 3334445555555566666666666666654
Q ss_pred h
Q 008265 461 L 461 (572)
Q Consensus 461 ~ 461 (572)
.
T Consensus 615 ~ 615 (777)
T KOG1128|consen 615 D 615 (777)
T ss_pred H
Confidence 3
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.0032 Score=70.13 Aligned_cols=331 Identities=9% Similarity=-0.041 Sum_probs=190.4
Q ss_pred HhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHH
Q 008265 121 VKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQL 200 (572)
Q Consensus 121 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~ 200 (572)
..+...|++.+|.......... . .....+......+...|+++.+..+++.+.... ...+..........
T Consensus 349 ~~~~~~g~~~~Al~~a~~a~d~------~---~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~-~~~~~~l~~~~a~~ 418 (903)
T PRK04841 349 EAWLAQGFPSEAIHHALAAGDA------Q---LLRDILLQHGWSLFNQGELSLLEECLNALPWEV-LLENPRLVLLQAWL 418 (903)
T ss_pred HHHHHCCCHHHHHHHHHHCCCH------H---HHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHH-HhcCcchHHHHHHH
Confidence 3455566666665544333111 1 122333333334445677777777766542111 11111222334455
Q ss_pred HhcCCChHHHHHhhhcC----CC-----c----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc----HHHHHHHH
Q 008265 201 CVNKPDVNLAIRYACIV----PR-----A----DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPN----MYICRTII 263 (572)
Q Consensus 201 ~~~~g~~~~a~~~~~~~----~~-----~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~ll 263 (572)
+...|++++|...+... .. . ......+...+...|+++.|...++...+.....+ ....+.+.
T Consensus 419 ~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg 498 (903)
T PRK04841 419 AQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLG 498 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Confidence 56788999887776542 11 1 12222344566789999999999998765311112 12445566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCC--C-CCCH--HHHHHH--HHHhcCChHHHHHHHHHHHH----cCCC--C-CHHHHHH
Q 008265 264 DVCGICGDYMKSRAIYEDLRSQN--V-TLNI--YVFNSL--MNVNAHDLKFTLEVYKNMQK----LGVM--A-DMASYNI 329 (572)
Q Consensus 264 ~~~~~~g~~~~a~~~~~~m~~~g--~-~p~~--~~~~~l--l~~~~~~~~~a~~~~~~m~~----~~~~--~-~~~~~~~ 329 (572)
..+...|++++|...+++..... . .+.. ..+..+ +....|++++|...+++... .+.. + ....+..
T Consensus 499 ~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 578 (903)
T PRK04841 499 EVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRI 578 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 67788999999999998876431 1 1111 122211 22245899999988887654 2221 1 2233445
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCC-chhhH-----HH
Q 008265 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP-NTITW-----SS 403 (572)
Q Consensus 330 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~-----~~ 403 (572)
+...+...|++++|...+.+................+..+...+...|+.++|.+.+.+........ ....+ ..
T Consensus 579 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~ 658 (903)
T PRK04841 579 RAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKV 658 (903)
T ss_pred HHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHH
Confidence 5566777899999999999887643222111123345556667788999999999988875421111 11111 11
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 404 LINACANAGLVEQAMHLFEEMLQAGCEPN---SQCCNILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 404 li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
.+..+...|+.+.|...+........... ...+..+..++...|+.++|...+++...
T Consensus 659 ~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~ 719 (903)
T PRK04841 659 RLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNE 719 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22445567899999998877653221111 11245666778899999999999988764
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=5e-05 Score=75.52 Aligned_cols=230 Identities=10% Similarity=0.068 Sum_probs=178.5
Q ss_pred HHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHH
Q 008265 195 FRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMK 274 (572)
Q Consensus 195 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 274 (572)
-.+...+...|-...|..+|+++ ..|..+|.+|...|+..+|..+..+..+ -+||...|..+.+......-+++
T Consensus 402 ~~laell~slGitksAl~I~Erl----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~yEk 475 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERL----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLYEK 475 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhH----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHHHH
Confidence 35678888899999999999876 6788899999999999999999988877 36889999999998888888999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 008265 275 SRAIYEDLRSQNVTLNIYVFNSLMNVN-AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHL 353 (572)
Q Consensus 275 a~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 353 (572)
|+++++..-.+ -...++.. .+ .++++++.+.|+.-.+.+. .-..+|-.+-.+..+.++++.|.+.|.....
T Consensus 476 awElsn~~sar----A~r~~~~~--~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~q~av~aF~rcvt- 547 (777)
T KOG1128|consen 476 AWELSNYISAR----AQRSLALL--ILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEKEQAAVKAFHRCVT- 547 (777)
T ss_pred HHHHhhhhhHH----HHHhhccc--cccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhhhHHHHHHHHHHhh-
Confidence 99999886543 00111111 12 3688999998887766432 2467788888888899999999999999887
Q ss_pred HHhCCCCCCH-HHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCC
Q 008265 354 EAKGVLKLDV-FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG-CEP 431 (572)
Q Consensus 354 ~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p 431 (572)
..||. ..||.+-.+|.+.|+-.+|...+.+..+.. .-+-..|...+....+.|.+++|.+.+.++.+.. ..-
T Consensus 548 -----L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~ 621 (777)
T KOG1128|consen 548 -----LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK 621 (777)
T ss_pred -----cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcc
Confidence 45654 589999999999999999999999999886 3355667777778889999999999999886421 111
Q ss_pred CHHHHHHHHHHHH
Q 008265 432 NSQCCNILLQACV 444 (572)
Q Consensus 432 ~~~~~~~li~~~~ 444 (572)
|..+...++....
T Consensus 622 d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 622 DDEVLLIIVRTVL 634 (777)
T ss_pred cchhhHHHHHHHH
Confidence 4444444444433
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00033 Score=73.02 Aligned_cols=134 Identities=11% Similarity=-0.023 Sum_probs=112.2
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchh
Q 008265 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF-TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399 (572)
Q Consensus 321 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 399 (572)
..+...+..|.......|+.++|..+++...+ +.|+.. ....+...+.+.+++++|+...++....... +..
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~------~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~ 155 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQ------RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAR 155 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh------hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHH
Confidence 34688888899999999999999999999988 456544 7788889999999999999999999887432 445
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhc
Q 008265 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (572)
Q Consensus 400 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 462 (572)
....+..++.+.|++++|..+|+++...+ .-+..++..+..++...|+.++|...|++..+.
T Consensus 156 ~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 156 EILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 67778888899999999999999999843 345788899999999999999999999987653
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00056 Score=73.05 Aligned_cols=231 Identities=14% Similarity=0.066 Sum_probs=148.6
Q ss_pred HhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 008265 212 RYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKH-LSSPN---MYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287 (572)
Q Consensus 212 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 287 (572)
++...-|.+...|-..|....+.++.++|.+++++.... ++.-. ...|.++++.-...|.-+...++|++..+.
T Consensus 1449 rlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy-- 1526 (1710)
T KOG1070|consen 1449 RLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY-- 1526 (1710)
T ss_pred HHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--
Confidence 334444555667777777777777777777777776554 11111 235666666666667777777777777664
Q ss_pred CCCHH-HHHHHHHHhc--CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCC--
Q 008265 288 TLNIY-VFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-- 362 (572)
Q Consensus 288 ~p~~~-~~~~ll~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-- 362 (572)
.|.. .|..|...|. +..++|-++++.|.+.-- -....|...+..+.+..+-+.|..++.+..+ .-|.
T Consensus 1527 -cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~------~lPk~e 1598 (1710)
T KOG1070|consen 1527 -CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALK------SLPKQE 1598 (1710)
T ss_pred -cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHh------hcchhh
Confidence 2332 3444444444 567777777777765321 3566777788888888887888888877765 2333
Q ss_pred -HHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHH
Q 008265 363 -VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS--QCCNIL 439 (572)
Q Consensus 363 -~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~l 439 (572)
+....-.+..-.+.|+.+++..+|+.......+ -...|+..|+.=.++|+.+.+..+|++....++.|-. ..|.-.
T Consensus 1599 Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkw 1677 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKW 1677 (1710)
T ss_pred hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHH
Confidence 334445555566788888888888877765322 4467888888888888888888888888887776653 345555
Q ss_pred HHHHHHhCCHhHHH
Q 008265 440 LQACVEACQFDRAF 453 (572)
Q Consensus 440 i~~~~~~g~~~~A~ 453 (572)
+..=-+.|+-+.+.
T Consensus 1678 LeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1678 LEYEKSHGDEKNVE 1691 (1710)
T ss_pred HHHHHhcCchhhHH
Confidence 55555556544433
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.0021 Score=56.48 Aligned_cols=153 Identities=13% Similarity=0.140 Sum_probs=82.7
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----c
Q 008265 301 NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD----A 376 (572)
Q Consensus 301 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~ 376 (572)
..+++++|++...... +......=+..+.+..+.+-|++.++.|.+. -+..+.+-|..+|.+ .
T Consensus 120 ~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i-------ded~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 120 HDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI-------DEDATLTQLAQAWVKLATGG 186 (299)
T ss_pred cCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-------chHHHHHHHHHHHHHHhccc
Confidence 3355666665554411 2222333334455666666677777666642 234455555555443 3
Q ss_pred ccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC-HhHHHHH
Q 008265 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ-FDRAFRL 455 (572)
Q Consensus 377 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~~ 455 (572)
+.+..|.-+|++|.+. ..|+..+.+....++...|++++|..++++...+. .-+..+...+|.+-...|. .+-..+.
T Consensus 187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 4566677777776653 35566666667777777777777777777766553 2234444444443333443 3444555
Q ss_pred HHHhhhccccccc
Q 008265 456 FRSWTLSKTQVAL 468 (572)
Q Consensus 456 ~~~m~~~~~~~~~ 468 (572)
+.+++......+.
T Consensus 265 l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 265 LSQLKLSHPEHPF 277 (299)
T ss_pred HHHHHhcCCcchH
Confidence 5666555444333
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.0004 Score=60.86 Aligned_cols=126 Identities=12% Similarity=0.121 Sum_probs=94.3
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHcccc--H
Q 008265 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV-FADAKW--W 379 (572)
Q Consensus 303 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~--~ 379 (572)
++.+++...++...+.+. .|...|..+...|...|++++|...|+...++. +.+...+..+..+ +...|+ .
T Consensus 53 ~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-----P~~~~~~~~lA~aL~~~~g~~~~ 126 (198)
T PRK10370 53 QTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-----GENAELYAALATVLYYQAGQHMT 126 (198)
T ss_pred hhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHhcCCCCc
Confidence 345666666666665543 377888888889999999999999999888741 3356677777776 466676 5
Q ss_pred HHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 008265 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436 (572)
Q Consensus 380 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 436 (572)
++|.+++++..+.+.. +...+..+...+.+.|++++|...|+++.+.. .|+..-+
T Consensus 127 ~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r~ 181 (198)
T PRK10370 127 PQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVNRT 181 (198)
T ss_pred HHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccHH
Confidence 8999999998887544 66778888888899999999999999988764 5555443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00029 Score=64.21 Aligned_cols=192 Identities=8% Similarity=-0.024 Sum_probs=127.3
Q ss_pred hhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcch
Q 008265 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (572)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 149 (572)
....+..+...+...|++++|...|+.+....+. .. ....++..+...+...|++++|+..++++.+. .|+..
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~--~~---~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~ 104 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPF--SP---YAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHP 104 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ch---hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCC
Confidence 3677788888899999999999999999887442 11 11344566677888999999999999999886 44332
Q ss_pred hhhhhhHHHHHHHHHH-------hhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchh
Q 008265 150 FDGSGFKLLKNECQRL-------LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADI 222 (572)
Q Consensus 150 ~~~~~~~~l~~~~~~~-------~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 222 (572)
.....+ +..+.+.+ .+.|+.+.|.+.|+.+.+.. |.+...+..+..... ..... ..
T Consensus 105 ~~~~a~--~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~~~---------~~ 167 (235)
T TIGR03302 105 DADYAY--YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRNRL---------AG 167 (235)
T ss_pred chHHHH--HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHHHH---------HH
Confidence 111111 11111111 12378999999999987653 443333322211110 00000 01
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008265 223 LFCNFVREFGKKRDLVSALRAYDASKKHLS-SP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (572)
Q Consensus 223 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 285 (572)
....+...+.+.|++++|...++...+... .| ....+..+..++.+.|++++|...++.+...
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 122566778899999999999999877632 12 3568889999999999999999999888765
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.0011 Score=70.96 Aligned_cols=198 Identities=13% Similarity=0.045 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCH---HHHHHHHHH--hcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 008265 257 YICRTIIDVCGICGDYMKSRAIYEDLRSQ-NVTLNI---YVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNIL 330 (572)
Q Consensus 257 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~p~~---~~~~~ll~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 330 (572)
..|-..|....+.++.++|.+++++.... ++.-.. ..|.++++. ..|.-+...++|+++.+.. -....|..|
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~L 1536 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLKL 1536 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHHH
Confidence 34555555555555566666555555433 222222 223333332 1144445555555555421 012234555
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCc---hhhHHHHHHH
Q 008265 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN---TITWSSLINA 407 (572)
Q Consensus 331 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~ 407 (572)
...|.+.+..++|.++++.|.+. +.-....|...+..+.++++-++|.+++.+..+. -|. .......++.
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-----F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-----FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-----hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHH
Confidence 55555555556666666555542 1223445555555555555555555555555443 222 1222333333
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhccc
Q 008265 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKT 464 (572)
Q Consensus 408 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 464 (572)
-.+.|+.+.+..+|+.....- +--...|+..++.=.+.|+.+.++.+|++....++
T Consensus 1610 EFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 345555555555555555431 22344555555555555555555555555554443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00014 Score=70.61 Aligned_cols=248 Identities=13% Similarity=0.038 Sum_probs=166.2
Q ss_pred HHHHhcCCChHHHHHhhhcC----CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHH
Q 008265 198 VQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM 273 (572)
Q Consensus 198 l~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 273 (572)
..-+.+.|+..+|.-.|+.. |.+...|.-|.......++-..|+..+.+..+... -+....-.|.-.|...|.-.
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP-~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDP-TNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC-ccHHHHHHHHHHHhhhhhHH
Confidence 33444556666665555542 33336677777777777777778877777776432 24566677777788888888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHH--H-------HHhc--CChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHcCChH
Q 008265 274 KSRAIYEDLRSQNVTLNIYVFNSL--M-------NVNA--HDLKFTLEVYKNMQK-LGVMADMASYNILLKACCLAGNTV 341 (572)
Q Consensus 274 ~a~~~~~~m~~~g~~p~~~~~~~l--l-------~~~~--~~~~~a~~~~~~m~~-~~~~~~~~~~~~ll~~~~~~g~~~ 341 (572)
.|+..|+.-+.... . ..|... . .... .......++|-++.. .+..+|......|--.|.-.|+++
T Consensus 371 ~Al~~L~~Wi~~~p--~-y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 371 QALKMLDKWIRNKP--K-YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHHHhCc--c-chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 88888877754421 0 000000 0 0011 124555666666644 454567777888888888889999
Q ss_pred HHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCch-hhHHHHHHHHHHcCCHHHHHH
Q 008265 342 LAQEIYGEVKHLEAKGVLKLD-VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT-ITWSSLINACANAGLVEQAMH 419 (572)
Q Consensus 342 ~a~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~ 419 (572)
.|...|+.... ++|+ ..+||-|...++...+.++|+..|++..+. .|+- ....-|.-+|...|.+++|.+
T Consensus 448 raiDcf~~AL~------v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~ 519 (579)
T KOG1125|consen 448 RAVDCFEAALQ------VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVK 519 (579)
T ss_pred HHHHHHHHHHh------cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHH
Confidence 99999999887 4555 458999999999999999999999999886 5554 233446667788899999988
Q ss_pred HHHHHHH---c------CCCCCHHHHHHHHHHHHHhCCHhHHHHHHH
Q 008265 420 LFEEMLQ---A------GCEPNSQCCNILLQACVEACQFDRAFRLFR 457 (572)
Q Consensus 420 ~~~~m~~---~------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 457 (572)
.|-..+. . +..++...|..|=.++.-.++.|.+.+...
T Consensus 520 hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~~ 566 (579)
T KOG1125|consen 520 HLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAAP 566 (579)
T ss_pred HHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhcc
Confidence 8877543 1 123345778888778888888887766654
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.16 E-value=4.2e-06 Score=49.95 Aligned_cols=33 Identities=48% Similarity=0.855 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 008265 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432 (572)
Q Consensus 400 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 432 (572)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566666666666666666666666666666665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.0038 Score=58.97 Aligned_cols=229 Identities=12% Similarity=0.023 Sum_probs=153.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHH--HH
Q 008265 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG-DYMKSRAIYEDLRSQNVTLNIYVFNS--LM 298 (572)
Q Consensus 222 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~--ll 298 (572)
.++..+-..+...+..++|+.+.+.+.+.... +..+|+.--.++...| ++++++..++++.+...+ +...|+- .+
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~ 115 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHH
Confidence 45555666677778889999999988875321 3345665555666667 578999999998876432 2223432 22
Q ss_pred HHhcCC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 008265 299 NVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA 376 (572)
Q Consensus 299 ~~~~~~--~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 376 (572)
....+. .++++..++++.+...+ +..+|+...-++.+.|+++++++.++++.+.. ..|...|+.....+.+.
T Consensus 116 l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-----~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-----VRNNSAWNQRYFVITRS 189 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-----CCchhHHHHHHHHHHhc
Confidence 222233 36778888888876654 78888888888888999999999999998742 34566777666555544
Q ss_pred ---cc----HHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 008265 377 ---KW----WQMALKVKEDMLSAGVTPNTITWSSLINACANA----GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445 (572)
Q Consensus 377 ---g~----~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 445 (572)
|. .++.++...++..... -|...|+.+...+... ++..+|.+.+.+..+.+ ..+......|++.|+.
T Consensus 190 ~~l~~~~~~~e~el~y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 190 PLLGGLEAMRDSELKYTIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred cccccccccHHHHHHHHHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 22 2466777766666533 2667888888888773 34466888888876643 3466778888888876
Q ss_pred hC------------------CHhHHHHHHHHhh
Q 008265 446 AC------------------QFDRAFRLFRSWT 460 (572)
Q Consensus 446 ~g------------------~~~~A~~~~~~m~ 460 (572)
.. ..++|.+++..+.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 268 GLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred hhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 32 2366777777764
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0018 Score=67.13 Aligned_cols=375 Identities=10% Similarity=-0.025 Sum_probs=198.2
Q ss_pred hhhhcccCCchhhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHH
Q 008265 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (572)
Q Consensus 59 ~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 138 (572)
+++.++.+|.- ...|..|-..|+..-+...|...|+...+.. +. ...........|+...++++|..+.-.
T Consensus 481 li~alrld~~~-apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD--at------daeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 481 LIRALRLDVSL-APAFAFLGQIYRDSDDMKRAKKCFDKAFELD--AT------DAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHhcccch-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--ch------hhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 66777777776 7788888888888778888888888877653 32 133344556778899999999888433
Q ss_pred hhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcC-
Q 008265 139 LNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV- 217 (572)
Q Consensus 139 m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~- 217 (572)
.-+. .|-. ....+. ......+.+.++...|+.-|+..++ +.|.+...|..++.+|.+.|++..|++.|.+.
T Consensus 552 ~~qk--a~a~---~~k~nW-~~rG~yyLea~n~h~aV~~fQsALR--~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs 623 (1238)
T KOG1127|consen 552 AAQK--APAF---ACKENW-VQRGPYYLEAHNLHGAVCEFQSALR--TDPKDYNLWLGLGEAYPESGRYSHALKVFTKAS 623 (1238)
T ss_pred Hhhh--chHH---HHHhhh-hhccccccCccchhhHHHHHHHHhc--CCchhHHHHHHHHHHHHhcCceehHHHhhhhhH
Confidence 2222 1110 011111 1111123457888888888887775 57888899999999999999999999999764
Q ss_pred -CCchhHHHH--HHHHHHhcCCHHHHHHHHHHHHhc------CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----
Q 008265 218 -PRADILFCN--FVREFGKKRDLVSALRAYDASKKH------LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS---- 284 (572)
Q Consensus 218 -~~~~~~~~~--li~~~~~~g~~~~a~~~~~~m~~~------~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~---- 284 (572)
......|.. ..-.-+..|.+++|.+.+..+... +..--..++-.+...+.-.|-..++.+++++-++
T Consensus 624 ~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~ 703 (1238)
T KOG1127|consen 624 LLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIV 703 (1238)
T ss_pred hcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 222233333 233445678999999888876432 1111223344444444444544555555544432
Q ss_pred ---CCCCCCHHHHHHHHHHhc----CChH----HHHHHH-HHHHHcCCC--------------------CCHHHHHHHHH
Q 008265 285 ---QNVTLNIYVFNSLMNVNA----HDLK----FTLEVY-KNMQKLGVM--------------------ADMASYNILLK 332 (572)
Q Consensus 285 ---~g~~p~~~~~~~ll~~~~----~~~~----~a~~~~-~~m~~~~~~--------------------~~~~~~~~ll~ 332 (572)
....-+...|-.+-.++. -.++ ....++ .+....+.- .+..+|..+..
T Consensus 704 ~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGi 783 (1238)
T KOG1127|consen 704 SLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGI 783 (1238)
T ss_pred HHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhH
Confidence 111112222222211110 0000 001111 111111111 12223333333
Q ss_pred HHHH----c----CChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHH
Q 008265 333 ACCL----A----GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404 (572)
Q Consensus 333 ~~~~----~----g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 404 (572)
.|.+ . .+...|...+.+..+++ ..+..+|+.|--. ...|++.-+..-|-+-.... +....+|..+
T Consensus 784 nylr~f~~l~et~~~~~~Ai~c~KkaV~L~-----ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~Nl 856 (1238)
T KOG1127|consen 784 NYLRYFLLLGETMKDACTAIRCCKKAVSLC-----ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNL 856 (1238)
T ss_pred HHHHHHHHcCCcchhHHHHHHHHHHHHHHh-----hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheecc
Confidence 3333 0 11123444444444431 2233344444332 34445555544444433331 1244555555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHH
Q 008265 405 INACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (572)
Q Consensus 405 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 458 (572)
--.|.+..+++.|...|...+... +.|...|.-........|+.-++..+|..
T Consensus 857 gvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 857 GVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred ceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 555666677778888777776542 23444554444444566777777777765
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00071 Score=61.69 Aligned_cols=182 Identities=12% Similarity=-0.024 Sum_probs=108.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHH--hcCChHHHHHHHHHHHHcCCCCCH--HH
Q 008265 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI----YVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADM--AS 326 (572)
Q Consensus 255 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~--~~~~~~~a~~~~~~m~~~~~~~~~--~~ 326 (572)
....+-.+...+.+.|++++|...|+++.... |+. ..+..+-.+ ..+++++|...++++.+....... .+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 44566666677778888888888888776652 321 122222222 236777777777777664332111 23
Q ss_pred HHHHHHHHHHc--------CChHHHHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCc
Q 008265 327 YNILLKACCLA--------GNTVLAQEIYGEVKHLEAKGVLKLDV-FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397 (572)
Q Consensus 327 ~~~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 397 (572)
+..+..++.+. |+.++|.+.|+.+.. ..|+. ..+.++..... .... ..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~------~~p~~~~~~~a~~~~~~----~~~~------~~------- 166 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR------RYPNSEYAPDAKKRMDY----LRNR------LA------- 166 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH------HCCCChhHHHHHHHHHH----HHHH------HH-------
Confidence 44444555554 567777777777765 23443 22222211100 0000 00
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhc
Q 008265 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGC--EPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (572)
Q Consensus 398 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 462 (572)
.....+...|.+.|++++|...++...+..- +.....+..+..++.+.|++++|..+++.+...
T Consensus 167 -~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 167 -GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred -HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 0112455668888999999999999886521 223567888999999999999999998887643
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0015 Score=65.33 Aligned_cols=219 Identities=13% Similarity=0.125 Sum_probs=115.7
Q ss_pred HHHHhcCCChHHHHHhhhcCCCch---hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHH
Q 008265 198 VQLCVNKPDVNLAIRYACIVPRAD---ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMK 274 (572)
Q Consensus 198 l~~~~~~g~~~~a~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 274 (572)
+.+......+.+|+.+++.++... .-|..+...|+..|+++.|+++|-+. ..++-.|.+|.+.|+|+.
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHH
Confidence 445555666666666666554432 33555666777777777777776442 234555667777777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHH--hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008265 275 SRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (572)
Q Consensus 275 a~~~~~~m~~~g~~p~~~~~~~ll~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 352 (572)
|.++-++.... ......|-+-..- ..|++.+|.++|-.+.. |+. .|.+|-+.|..++.+++.+.--
T Consensus 810 a~kla~e~~~~--e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~~-----aiqmydk~~~~ddmirlv~k~h- 877 (1636)
T KOG3616|consen 810 AFKLAEECHGP--EATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PDK-----AIQMYDKHGLDDDMIRLVEKHH- 877 (1636)
T ss_pred HHHHHHHhcCc--hhHHHHHHHhHHhHHhhcchhhhhheeEEccC----chH-----HHHHHHhhCcchHHHHHHHHhC-
Confidence 77666554321 1122222221111 12455555555533321 332 4566777777766666655431
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 008265 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432 (572)
Q Consensus 353 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 432 (572)
| ..-..|...+..-|-..|++..|.+-|-+..+ |.+-+..|...+.|++|.++-+. .| ..|
T Consensus 878 ----~--d~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriakt---eg-g~n 938 (1636)
T KOG3616|consen 878 ----G--DHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKT---EG-GAN 938 (1636)
T ss_pred ----h--hhhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhc---cc-ccc
Confidence 1 11122445556666677777777776655432 55566677777777777655432 22 223
Q ss_pred HHHHHHHHHHHHHhCCHhHHHHHHHH
Q 008265 433 SQCCNILLQACVEACQFDRAFRLFRS 458 (572)
Q Consensus 433 ~~~~~~li~~~~~~g~~~~A~~~~~~ 458 (572)
..-....+ +++.=--+.|.+++++
T Consensus 939 ~~k~v~fl--waksiggdaavkllnk 962 (1636)
T KOG3616|consen 939 AEKHVAFL--WAKSIGGDAAVKLLNK 962 (1636)
T ss_pred HHHHHHHH--HHHhhCcHHHHHHHHh
Confidence 33333333 3333334566777664
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00097 Score=58.52 Aligned_cols=116 Identities=13% Similarity=0.038 Sum_probs=73.1
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHH
Q 008265 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382 (572)
Q Consensus 303 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 382 (572)
|++..|...+++..... ++|..+|+.+.-+|.+.|++++|..-|.+..++. .-+...+|.+.-.+.-.|+.+.|
T Consensus 114 g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-----~~~p~~~nNlgms~~L~gd~~~A 187 (257)
T COG5010 114 GNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARRAYRQALELA-----PNEPSIANNLGMSLLLRGDLEDA 187 (257)
T ss_pred cchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-----cCCchhhhhHHHHHHHcCCHHHH
Confidence 33444444444433322 3467777777777777777777777777777641 23445666777777777777777
Q ss_pred HHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008265 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425 (572)
Q Consensus 383 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 425 (572)
..++......+.. |...-..+.......|++++|..+...-.
T Consensus 188 ~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 188 ETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 7777777766433 44555556666677777777777655543
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.10 E-value=5.8e-06 Score=49.34 Aligned_cols=33 Identities=12% Similarity=0.259 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 008265 258 ICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN 290 (572)
Q Consensus 258 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~ 290 (572)
+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.09 E-value=6.4e-06 Score=48.76 Aligned_cols=33 Identities=15% Similarity=0.407 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 008265 257 YICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL 289 (572)
Q Consensus 257 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p 289 (572)
.+|+.+|++|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777665
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0089 Score=62.22 Aligned_cols=318 Identities=11% Similarity=0.062 Sum_probs=214.9
Q ss_pred hHHHHHHHhHhhcCChhHHH-----------HHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhh
Q 008265 72 DYYADMASKLAKDGRLEEFA-----------MIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLN 140 (572)
Q Consensus 72 ~~~~~li~~~~~~g~~~~A~-----------~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~ 140 (572)
..|-...+-+.++.+.+-=. .+.++..+.++.-. -+.+-.+..+.++...+-..+-+++++++.
T Consensus 937 SlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~-----~dPe~vS~tVkAfMtadLp~eLIELLEKIv 1011 (1666)
T KOG0985|consen 937 SLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPET-----QDPEEVSVTVKAFMTADLPNELIELLEKIV 1011 (1666)
T ss_pred hHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCcc-----CChHHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 45556666666665543222 33344444433110 012334445677778888888888888875
Q ss_pred hcCCCCcchhhhhhhH-HHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCC
Q 008265 141 ELGVAPLELFDGSGFK-LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR 219 (572)
Q Consensus 141 ~~~~~p~~~~~~~~~~-~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 219 (572)
-. |+.+..+..+. .++-... .-+-..+.+..+++-..+ . ..+...+..++-+++|..+|+....
T Consensus 1012 L~---~S~Fse~~nLQnLLiLtAi----kad~trVm~YI~rLdnyD--a------~~ia~iai~~~LyEEAF~ifkkf~~ 1076 (1666)
T KOG0985|consen 1012 LD---NSVFSENRNLQNLLILTAI----KADRTRVMEYINRLDNYD--A------PDIAEIAIENQLYEEAFAIFKKFDM 1076 (1666)
T ss_pred cC---CcccccchhhhhhHHHHHh----hcChHHHHHHHHHhccCC--c------hhHHHHHhhhhHHHHHHHHHHHhcc
Confidence 53 44443333322 2222111 235556666666664322 1 1356777788899999999998877
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008265 220 ADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299 (572)
Q Consensus 220 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 299 (572)
+....+.||.- -+.++.|.+.-++.. ....|..+..+-.+.|.+.+|.+-|-+.. |+..|..++.
T Consensus 1077 n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyikad------Dps~y~eVi~ 1141 (1666)
T KOG0985|consen 1077 NVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKAD------DPSNYLEVID 1141 (1666)
T ss_pred cHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhcC------CcHHHHHHHH
Confidence 76666666653 367777777766643 34689999999999999999988775543 6677888888
Q ss_pred Hh--cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccc
Q 008265 300 VN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK 377 (572)
Q Consensus 300 ~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 377 (572)
.. +|.+++-...+....+..-.|.. =+.+|-+|++.++..+.+++. .-||......+.+-|...|
T Consensus 1142 ~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi-----------~gpN~A~i~~vGdrcf~~~ 1208 (1666)
T KOG0985|consen 1142 VASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFI-----------AGPNVANIQQVGDRCFEEK 1208 (1666)
T ss_pred HHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHh-----------cCCCchhHHHHhHHHhhhh
Confidence 64 48899988888776665555544 456888999999988766654 3588888888899999999
Q ss_pred cHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHH
Q 008265 378 WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452 (572)
Q Consensus 378 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 452 (572)
.++.|.-++... .-|..|...+...|++..|.+.-++.. +..||..+-.+|...+.+..|
T Consensus 1209 ~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKAn------s~ktWK~VcfaCvd~~EFrlA 1268 (1666)
T KOG0985|consen 1209 MYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKAN------STKTWKEVCFACVDKEEFRLA 1268 (1666)
T ss_pred hhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHhchhhhhHH
Confidence 999998877654 348888888999999988887655543 567888888888776665544
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0021 Score=55.99 Aligned_cols=149 Identities=13% Similarity=0.046 Sum_probs=90.5
Q ss_pred cCChhHHHHHHHHHHhh---c-CChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHH
Q 008265 84 DGRLEEFAMIVESVVVS---E-GNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLK 159 (572)
Q Consensus 84 ~g~~~~A~~~~~~m~~~---~-~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~ 159 (572)
..+.++.++++.++... | ..++. +..+..++.+....|+.+.|...++.+... .|....-..+..+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~------w~l~EqV~IAAld~~~~~lAq~C~~~L~~~--fp~S~RV~~lkam~l 96 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEI------WTLYEQVFIAALDTGRDDLAQKCINQLRDR--FPGSKRVGKLKAMLL 96 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchH------HHHHHHHHHHHHHhcchHHHHHHHHHHHHh--CCCChhHHHHHHHHH
Confidence 35778899999888743 3 33443 556777888888999999999999998877 365443333444443
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHH----hhhcCCCchhHHHHHHHHHHhcC
Q 008265 160 NECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIR----YACIVPRADILFCNFVREFGKKR 235 (572)
Q Consensus 160 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~----~~~~~~~~~~~~~~li~~~~~~g 235 (572)
. -.|++++|+++++.+++.+ |.+.+.+..-+.+....|...+|++ +++.++.+...|.-+-..|...|
T Consensus 97 E------a~~~~~~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~ 168 (289)
T KOG3060|consen 97 E------ATGNYKEAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEG 168 (289)
T ss_pred H------HhhchhhHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHh
Confidence 3 2689999999999998765 5555555444444444444444433 22333444444444444444444
Q ss_pred CHHHHHHHHHHHH
Q 008265 236 DLVSALRAYDASK 248 (572)
Q Consensus 236 ~~~~a~~~~~~m~ 248 (572)
++++|.-.++++.
T Consensus 169 ~f~kA~fClEE~l 181 (289)
T KOG3060|consen 169 DFEKAAFCLEELL 181 (289)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.09 E-value=6.8e-06 Score=48.64 Aligned_cols=32 Identities=44% Similarity=0.847 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008265 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431 (572)
Q Consensus 400 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 431 (572)
+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44555555555555555555555555544444
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0062 Score=57.57 Aligned_cols=193 Identities=11% Similarity=0.070 Sum_probs=130.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHH---HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008265 258 ICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY-VFNS---LMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKA 333 (572)
Q Consensus 258 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~---ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 333 (572)
++..+-..+...++.++|+.++.++++. .|+.. .|+. ++.....++++++..++++.+.+.+ +..+|+.--..
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHH
Confidence 3444444555667889999999998876 34433 2221 2222223679999999999887654 55567665555
Q ss_pred HHHcCCh--HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHc
Q 008265 334 CCLAGNT--VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411 (572)
Q Consensus 334 ~~~~g~~--~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 411 (572)
+.+.|+. +++..+++.+.+.. +-|..+|+.....+...|+++++++.++++.+.+.. |...|+.....+.+.
T Consensus 116 l~~l~~~~~~~el~~~~kal~~d-----pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLD-----AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRS 189 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhC-----cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhc
Confidence 6666653 66788888887632 446778999888899999999999999999988655 667787776666554
Q ss_pred ---CCH----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh----CCHhHHHHHHHHhh
Q 008265 412 ---GLV----EQAMHLFEEMLQAGCEPNSQCCNILLQACVEA----CQFDRAFRLFRSWT 460 (572)
Q Consensus 412 ---g~~----~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~m~ 460 (572)
|.. ++..++..++.... +-|...|+.+...+... ++..+|.+++.+..
T Consensus 190 ~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~ 248 (320)
T PLN02789 190 PLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVL 248 (320)
T ss_pred cccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhh
Confidence 222 45667776666653 44667787777777662 33455777766644
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.014 Score=56.70 Aligned_cols=289 Identities=12% Similarity=0.076 Sum_probs=170.6
Q ss_pred hhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhh----hcCCCchhHHHHHHHHHHhcCCHHHHHH
Q 008265 167 DSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYA----CIVPRADILFCNFVREFGKKRDLVSALR 242 (572)
Q Consensus 167 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~----~~~~~~~~~~~~li~~~~~~g~~~~a~~ 242 (572)
..|+++.|+.+|-+... +.|.+.+.|..-..+|+..|++++|++-- +.-|.-..-|+....++.-.|++++|..
T Consensus 14 s~~d~~~ai~~~t~ai~--l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ 91 (539)
T KOG0548|consen 14 SSGDFETAIRLFTEAIM--LSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAIL 91 (539)
T ss_pred ccccHHHHHHHHHHHHc--cCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHH
Confidence 47999999999988764 56778899999999999999999887643 3335556789999999999999999999
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhcCCH------------------------HHH-HHHHHHHHhC----CCCC-CHH
Q 008265 243 AYDASKKHLSSPNMYICRTIIDVCGICGDY------------------------MKS-RAIYEDLRSQ----NVTL-NIY 292 (572)
Q Consensus 243 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~------------------------~~a-~~~~~~m~~~----g~~p-~~~ 292 (572)
-|.+-++.. +-+...++-+..++...... +.+ ..+++.+.+. +... |..
T Consensus 92 ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r 170 (539)
T KOG0548|consen 92 AYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPR 170 (539)
T ss_pred HHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHH
Confidence 999877753 22444555555554111000 000 0000000000 0000 000
Q ss_pred HHHH-------------------------------------------------------HHHH-hc-CChHHHHHHHHHH
Q 008265 293 VFNS-------------------------------------------------------LMNV-NA-HDLKFTLEVYKNM 315 (572)
Q Consensus 293 ~~~~-------------------------------------------------------ll~~-~~-~~~~~a~~~~~~m 315 (572)
...+ +.++ +. .+++.+.+-+...
T Consensus 171 ~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a 250 (539)
T KOG0548|consen 171 LMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKA 250 (539)
T ss_pred HHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 0000 0000 00 1344444444444
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccccHHHHHHHHHHHHHCC
Q 008265 316 QKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD--VFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393 (572)
Q Consensus 316 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 393 (572)
.+.. -+..-++..-.+|...|...++...-+...+.+.......+ ...+..+..+|.+.++++.++..|.+.....
T Consensus 251 ~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~ 328 (539)
T KOG0548|consen 251 LELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEH 328 (539)
T ss_pred HhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhh
Confidence 4432 24444555666777777777766666555442211100000 0112223335666778888888888876654
Q ss_pred CCCchhhH-------------------------HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC
Q 008265 394 VTPNTITW-------------------------SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448 (572)
Q Consensus 394 ~~p~~~~~-------------------------~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 448 (572)
..||..+= -.-...+.+.|++..|+..+.++++.. +-|...|.....+|.+.|.
T Consensus 329 Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~ 407 (539)
T KOG0548|consen 329 RTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGE 407 (539)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhh
Confidence 44444321 111334567788999999999988875 5567788888888999999
Q ss_pred HhHHHHHHHHhhh
Q 008265 449 FDRAFRLFRSWTL 461 (572)
Q Consensus 449 ~~~A~~~~~~m~~ 461 (572)
+..|.+=.+...+
T Consensus 408 ~~~aL~Da~~~ie 420 (539)
T KOG0548|consen 408 YPEALKDAKKCIE 420 (539)
T ss_pred HHHHHHHHHHHHh
Confidence 8888876555443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00056 Score=60.00 Aligned_cols=148 Identities=14% Similarity=0.013 Sum_probs=119.7
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHH
Q 008265 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382 (572)
Q Consensus 303 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 382 (572)
|+-+....+....... ...|.......+....+.|++.+|...|.+.... -++|...|+.+.-+|.+.|+.+.|
T Consensus 80 G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-----~p~d~~~~~~lgaaldq~Gr~~~A 153 (257)
T COG5010 80 GDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-----APTDWEAWNLLGAALDQLGRFDEA 153 (257)
T ss_pred ccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-----CCCChhhhhHHHHHHHHccChhHH
Confidence 5555555555554332 2336666777889999999999999999999864 378899999999999999999999
Q ss_pred HHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHH
Q 008265 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (572)
Q Consensus 383 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 458 (572)
..-|.+..+.... +...+|.|.-.|.-.|+.+.|..++......+ .-|..+-..+..+....|++++|..+...
T Consensus 154 r~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 154 RRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 9999999887433 44667777778888899999999999998775 44777788888899999999999998754
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00056 Score=66.52 Aligned_cols=247 Identities=10% Similarity=0.021 Sum_probs=181.2
Q ss_pred HHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcC----CCchhHHHHHHHHHHhcCCHHH
Q 008265 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVS 239 (572)
Q Consensus 164 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~ 239 (572)
.+.+.|++.+|.-.|+...+. .|.....|-.|...-..+++-..|+..+.+- |.+-...-.|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkq--dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQ--DPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhh--ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHH
Confidence 445688999999999987765 5788899999999999999988887776653 5555888889999999999999
Q ss_pred HHHHHHHHHhcCCC--------CcHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hCC--CCCCHHHHHHHHHHhcCChHHH
Q 008265 240 ALRAYDASKKHLSS--------PNMYICRTIIDVCGICGDYMKSRAIYEDLR-SQN--VTLNIYVFNSLMNVNAHDLKFT 308 (572)
Q Consensus 240 a~~~~~~m~~~~~~--------~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~-~~g--~~p~~~~~~~ll~~~~~~~~~a 308 (572)
|+.+++.=.+..++ ++...-+. ..+.....+.+..++|-++. ..+ +.||+.+--.+|.-..+++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 99998765432210 01000000 22233344556666666654 445 6677776666777777999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHccccHHHHHHHHH
Q 008265 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV-FTYSTIVKVFADAKWWQMALKVKE 387 (572)
Q Consensus 309 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~ 387 (572)
.+.|+........ |..+||-|...++...+.++|+..|.+..+ ++|+- .+...|.-+|...|.+++|.+.|-
T Consensus 450 iDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALq------LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 450 VDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQ------LQPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHh------cCCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 9999999886443 678899999999999999999999999998 56774 466677778999999999988877
Q ss_pred HHHHC---------CCCCchhhHHHHHHHHHHcCCHHHHHHHH
Q 008265 388 DMLSA---------GVTPNTITWSSLINACANAGLVEQAMHLF 421 (572)
Q Consensus 388 ~m~~~---------g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 421 (572)
..... +..++...|.+|=.++...++.|-+.+..
T Consensus 523 ~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 523 EALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred HHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 65432 11224467888888888888877555443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00032 Score=58.02 Aligned_cols=92 Identities=8% Similarity=-0.152 Sum_probs=51.8
Q ss_pred HHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Q 008265 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447 (572)
Q Consensus 368 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 447 (572)
.+...+...|++++|...|+........ +...|..+..++.+.|++++|...|+...+.. +.+...+..+..++.+.|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence 3445555566666666666665554221 44555555556666666666666666665543 334555555555666666
Q ss_pred CHhHHHHHHHHhhh
Q 008265 448 QFDRAFRLFRSWTL 461 (572)
Q Consensus 448 ~~~~A~~~~~~m~~ 461 (572)
+.++|...|+...+
T Consensus 107 ~~~eAi~~~~~Al~ 120 (144)
T PRK15359 107 EPGLAREAFQTAIK 120 (144)
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666655443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0066 Score=55.35 Aligned_cols=293 Identities=12% Similarity=0.063 Sum_probs=151.6
Q ss_pred hhhhcccCCchhhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHH
Q 008265 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (572)
Q Consensus 59 ~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 138 (572)
+-.++..+|+. -.++-.-...|...|+-..|+.=|...++. .|+-.. +...-...+.+.|.+++|..=|+.
T Consensus 61 yHaAve~dp~~-Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~------ARiQRg~vllK~Gele~A~~DF~~ 131 (504)
T KOG0624|consen 61 YHAAVEGDPNN-YQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMA------ARIQRGVVLLKQGELEQAEADFDQ 131 (504)
T ss_pred HHHHHcCCchh-HHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHH------HHHHhchhhhhcccHHHHHHHHHH
Confidence 44556666665 444444556677788888888888888876 444222 222233457799999999999999
Q ss_pred hhhcCCCCcchhhhhhhHHHH---------HHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHH
Q 008265 139 LNELGVAPLELFDGSGFKLLK---------NECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNL 209 (572)
Q Consensus 139 m~~~~~~p~~~~~~~~~~~l~---------~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 209 (572)
+.+. .|+.-+......-+. .......-.|+...|+.....+++ +.|.+...+..-...|...|.+..
T Consensus 132 vl~~--~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llE--i~~Wda~l~~~Rakc~i~~~e~k~ 207 (504)
T KOG0624|consen 132 VLQH--EPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLE--IQPWDASLRQARAKCYIAEGEPKK 207 (504)
T ss_pred HHhc--CCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHh--cCcchhHHHHHHHHHHHhcCcHHH
Confidence 9887 343211111111110 001111123555555555555554 234444444444444555555554
Q ss_pred HHHhhhcC---CC-chhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008265 210 AIRYACIV---PR-ADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (572)
Q Consensus 210 a~~~~~~~---~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 285 (572)
|+.-++.. .. +...+--+-..+...|+.+.++..+.+-.+ +.||...+ |.-...+.+..+.++.|.+.
T Consensus 208 AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~C------f~~YKklkKv~K~les~e~~ 279 (504)
T KOG0624|consen 208 AIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLC------FPFYKKLKKVVKSLESAEQA 279 (504)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhH------HHHHHHHHHHHHHHHHHHHH
Confidence 44333221 11 112233333344444444444444444433 22332211 00111112222222222211
Q ss_pred CCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCC
Q 008265 286 NVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMA---SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD 362 (572)
Q Consensus 286 g~~p~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 362 (572)
.-.++|.++++..+...+....-... .+..+-.++...|++.+|++...++.+ +.||
T Consensus 280 --------------ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~------~d~~ 339 (504)
T KOG0624|consen 280 --------------IEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD------IDPD 339 (504)
T ss_pred --------------HhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh------cCch
Confidence 01134566666666665543321222 234455666777888888888888876 3444
Q ss_pred -HHHHHHHHHHHHccccHHHHHHHHHHHHHC
Q 008265 363 -VFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (572)
Q Consensus 363 -~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 392 (572)
+.++.--..+|.-...+|.|+.-|+...+.
T Consensus 340 dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 340 DVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 667777778888888888888888887765
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00049 Score=56.89 Aligned_cols=108 Identities=9% Similarity=-0.031 Sum_probs=83.6
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHH
Q 008265 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM 389 (572)
Q Consensus 310 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 389 (572)
.++++..+. .|+ .+......+...|++++|...|+..... -+.+...|..+..++.+.|++++|...|+..
T Consensus 14 ~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~A 84 (144)
T PRK15359 14 DILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMA-----QPWSWRAHIALAGTWMMLKEYTTAINFYGHA 84 (144)
T ss_pred HHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 345555442 233 3445677788899999999999988863 1446678888888999999999999999999
Q ss_pred HHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 390 LSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 390 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
.+... .+...+..+..++...|+.++|...|+...+.
T Consensus 85 l~l~p-~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 85 LMLDA-SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HhcCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 87643 36678888888999999999999999998876
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0023 Score=67.71 Aligned_cols=134 Identities=13% Similarity=0.067 Sum_probs=65.6
Q ss_pred hhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 008265 167 DSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDA 246 (572)
Q Consensus 167 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 246 (572)
+.+++++|..+.+...+. .|.....|..+...+.+.++...+..+ .++.......++.-+..+...
T Consensus 43 ~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv------------~~l~~~~~~~~~~~ve~~~~~ 108 (906)
T PRK14720 43 SENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL------------NLIDSFSQNLKWAIVEHICDK 108 (906)
T ss_pred hcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh------------hhhhhcccccchhHHHHHHHH
Confidence 456666666666654432 344444444444445555554433221 334444444444444444444
Q ss_pred HHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc-CChHHHHHHHHHHHH
Q 008265 247 SKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA-HDLKFTLEVYKNMQK 317 (572)
Q Consensus 247 m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~~~~a~~~~~~m~~ 317 (572)
|.+.+ -+...+-.+..+|-+.|+.++|.++++++.+.. +-|....|.+-..++ .++++|++++.+...
T Consensus 109 i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~dL~KA~~m~~KAV~ 177 (906)
T PRK14720 109 ILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEEDKEKAITYLKKAIY 177 (906)
T ss_pred HHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 44422 223355556666666666666666666666554 223444444444333 255555555554443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0014 Score=68.40 Aligned_cols=126 Identities=2% Similarity=-0.117 Sum_probs=73.2
Q ss_pred hhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhc----CCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 008265 169 GEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKRDLVSALRAY 244 (572)
Q Consensus 169 g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~----~~~~~~~~~~li~~~~~~g~~~~a~~~~ 244 (572)
|++++|..+++...+. .|+.......+..++.+.+++++|+...++ -|.+......+..++.+.|++++|..+|
T Consensus 100 g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y 177 (694)
T PRK15179 100 HRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACF 177 (694)
T ss_pred CCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHH
Confidence 4444444444444332 333333344444444444444444333222 2344466777777888888888888888
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008265 245 DASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298 (572)
Q Consensus 245 ~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 298 (572)
++....+. -+..++..+-.++-+.|+.++|...|+...+.- .+....|+..+
T Consensus 178 ~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 178 ERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred HHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 88877332 246677777778888888888888888876552 23445554444
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00094 Score=54.73 Aligned_cols=106 Identities=8% Similarity=-0.009 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHH
Q 008265 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (572)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 403 (572)
......+...+...|++++|.+.|+.+... .+.+...+..+...+.+.|++++|...++...+.+. .+...+..
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~ 90 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAY-----DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP-DDPRPYFH 90 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CChHHHHH
Confidence 344556667777888888888888877653 134566777777888888888888888888776642 24566667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 008265 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCN 437 (572)
Q Consensus 404 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 437 (572)
+...|...|+.++|...|+...+. .|+...+.
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 122 (135)
T TIGR02552 91 AAECLLALGEPESALKALDLAIEI--CGENPEYS 122 (135)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--ccccchHH
Confidence 777888888888888888887765 35444433
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0073 Score=64.06 Aligned_cols=215 Identities=6% Similarity=-0.009 Sum_probs=126.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008265 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNM-YICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV 300 (572)
Q Consensus 222 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 300 (572)
..+..|+..+...+++++|.++.+...+. .|+. ..|-.+...+.+.++.+++..+ .+... .+..
T Consensus 32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~--~~~~--------- 96 (906)
T PRK14720 32 KELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLIDS--FSQN--------- 96 (906)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhhh--cccc---------
Confidence 56677777887888888888888766554 2332 2222222256666665555444 22211 1111
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHH
Q 008265 301 NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380 (572)
Q Consensus 301 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 380 (572)
.++..+..+.+.|...+ -+...+..+..+|-+.|+.+++..+|+++.+.. +-|..+.|.+...|... +++
T Consensus 97 --~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-----~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 97 --LKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-----RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred --cchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----cccHHHHHHHHHHHHHh-hHH
Confidence 12333344444554432 234467777788888888888888888888742 34566778888888877 888
Q ss_pred HHHHHHHHHHHCCCCCchhhHHHHHHHH---H--HcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHhCCHhHHHH
Q 008265 381 MALKVKEDMLSAGVTPNTITWSSLINAC---A--NAGLVEQAMHLFEEMLQA-GCEPNSQCCNILLQACVEACQFDRAFR 454 (572)
Q Consensus 381 ~a~~~~~~m~~~g~~p~~~~~~~li~~~---~--~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~ 454 (572)
+|++++.+....-+ +..-|+.+...+ + ...+++.-..+.+.+... |..--..++--+...|-..++|+++..
T Consensus 167 KA~~m~~KAV~~~i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~ 244 (906)
T PRK14720 167 KAITYLKKAIYRFI--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIY 244 (906)
T ss_pred HHHHHHHHHHHHHH--hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHH
Confidence 88888877765411 111222222211 1 112334444444444432 434445666777778888889999999
Q ss_pred HHHHhhhcc
Q 008265 455 LFRSWTLSK 463 (572)
Q Consensus 455 ~~~~m~~~~ 463 (572)
+|+.+.+..
T Consensus 245 iLK~iL~~~ 253 (906)
T PRK14720 245 ILKKILEHD 253 (906)
T ss_pred HHHHHHhcC
Confidence 999887643
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0058 Score=58.64 Aligned_cols=110 Identities=13% Similarity=0.053 Sum_probs=57.6
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccccHHH
Q 008265 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTIVKVFADAKWWQM 381 (572)
Q Consensus 303 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~ 381 (572)
+++++|+..++.+.+.-. -|...+....+.+.+.++.++|.+.++.+.. ..|+ ...+-.+..+|.+.|++.+
T Consensus 320 ~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~------l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 320 GQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALA------LDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred cccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHh------cCCCccHHHHHHHHHHHhcCChHH
Confidence 555555555555554322 2344444445555556666666666655554 2344 3344445555555666666
Q ss_pred HHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHH
Q 008265 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHL 420 (572)
Q Consensus 382 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 420 (572)
|..+++....... -|...|..|.++|...|+..++..-
T Consensus 393 ai~~L~~~~~~~p-~dp~~w~~LAqay~~~g~~~~a~~A 430 (484)
T COG4783 393 AIRILNRYLFNDP-EDPNGWDLLAQAYAELGNRAEALLA 430 (484)
T ss_pred HHHHHHHHhhcCC-CCchHHHHHHHHHHHhCchHHHHHH
Confidence 6655555554422 2455566666666655555554443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00059 Score=59.77 Aligned_cols=120 Identities=10% Similarity=0.068 Sum_probs=99.3
Q ss_pred cCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHH-HHcCC--
Q 008265 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC-ANAGL-- 413 (572)
Q Consensus 337 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~-~~~g~-- 413 (572)
.++.+++...++...+. -+.|...|..+...|...|++++|...|++..+.... +...+..+..++ ...|+
T Consensus 52 ~~~~~~~i~~l~~~L~~-----~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~ 125 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA-----NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHM 125 (198)
T ss_pred chhHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCC
Confidence 56667777777777663 2567889999999999999999999999999987543 667777777764 67777
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhcc
Q 008265 414 VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463 (572)
Q Consensus 414 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 463 (572)
.++|.+++++..+.+ +-+...+..+..++.+.|++++|...|+++.+..
T Consensus 126 ~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 126 TPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred cHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 599999999999875 4467888888899999999999999999998754
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00019 Score=69.28 Aligned_cols=127 Identities=13% Similarity=0.137 Sum_probs=105.0
Q ss_pred cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCc
Q 008265 318 LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397 (572)
Q Consensus 318 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 397 (572)
.+.+.+......+++.+....+.+++..++-..........+. ..|..++|+.|.+.|..+.++.+++.=...|+-||
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~--~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D 137 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLL--PSTHHALVRQCLELGAEDELLELLKNRLQYGIFPD 137 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCccccccc--CccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCC
Confidence 3455677888888998888888999999888887632122122 23556999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 008265 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446 (572)
Q Consensus 398 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 446 (572)
..++|.||+.+.+.|++..|.++..+|...+...+..|+..-+.+|.+.
T Consensus 138 ~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 138 NFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999999998877777888888777777766
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0013 Score=63.35 Aligned_cols=122 Identities=15% Similarity=0.138 Sum_probs=62.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 008265 260 RTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339 (572)
Q Consensus 260 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 339 (572)
..++..+...++++.|.++|+++.+.. |+....-+-+....++-.+|.+++++..+.... +......-...|.+.++
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PEVAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCC
Confidence 444555555566777777777766652 443322111111223444555555555543221 34444444455555666
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHccccHHHHHHHHHHHH
Q 008265 340 TVLAQEIYGEVKHLEAKGVLKLDVF-TYSTIVKVFADAKWWQMALKVKEDML 390 (572)
Q Consensus 340 ~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~ 390 (572)
.+.|..+.+++.+ ..|+.. +|..|..+|.+.|+++.|+..++.+.
T Consensus 250 ~~lAL~iAk~av~------lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 250 YELALEIAKKAVE------LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHH------hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 6666666666555 233333 56666666666666666665555543
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.043 Score=55.77 Aligned_cols=185 Identities=9% Similarity=-0.017 Sum_probs=124.9
Q ss_pred hhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcC-CCc-----hhHHHHHHHHHH-hcCCHH
Q 008265 166 LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV-PRA-----DILFCNFVREFG-KKRDLV 238 (572)
Q Consensus 166 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~-~~~-----~~~~~~li~~~~-~~g~~~ 238 (572)
..+|++..+.+.|++....-+ .....|..+...|...|.-..|..+++.- +.. ...+-..-..|. +.|.++
T Consensus 334 ~~~g~f~~lae~fE~~~~~~~--~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~e 411 (799)
T KOG4162|consen 334 SRCGQFEVLAEQFEQALPFSF--GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVE 411 (799)
T ss_pred HHHHHHHHHHHHHHHHhHhhh--hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhh
Confidence 347999999999988765332 34467888888888888888888887653 221 122222223333 346667
Q ss_pred HHHHHHHHHHhc--CC--CCcHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHhc
Q 008265 239 SALRAYDASKKH--LS--SPNMYICRTIIDVCGICG-----------DYMKSRAIYEDLRSQ-NVTLNIYVFNSLMNVNA 302 (572)
Q Consensus 239 ~a~~~~~~m~~~--~~--~~~~~~~~~ll~~~~~~g-----------~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~ 302 (572)
+++++-.+.... +. ......|-.+--+|...- ...++++.+++..+. +-.|+..-|-++-.+..
T Consensus 412 egldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~ 491 (799)
T KOG4162|consen 412 EGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQ 491 (799)
T ss_pred hHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Confidence 776666655441 11 122334444444443321 245677888887665 44567777777777888
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008265 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (572)
Q Consensus 303 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 352 (572)
++.+.|++..++..+.+-.-+...|..+.-.+...+++.+|+.+.+...+
T Consensus 492 R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~ 541 (799)
T KOG4162|consen 492 RQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALE 541 (799)
T ss_pred HhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 99999999999998876666888898888888899999999999887765
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00026 Score=53.30 Aligned_cols=73 Identities=22% Similarity=0.392 Sum_probs=38.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHhcC----------ChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008265 263 IDVCGICGDYMKSRAIYEDLRSQNV-TLNIYVFNSLMNVNAH----------DLKFTLEVYKNMQKLGVMADMASYNILL 331 (572)
Q Consensus 263 l~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~----------~~~~a~~~~~~m~~~~~~~~~~~~~~ll 331 (572)
|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.+. +.-..+.+|+.|...+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3334444555555555555555555 5555555555554331 1223455556666666666666666666
Q ss_pred HHHH
Q 008265 332 KACC 335 (572)
Q Consensus 332 ~~~~ 335 (572)
..+.
T Consensus 112 ~~Ll 115 (120)
T PF08579_consen 112 GSLL 115 (120)
T ss_pred HHHH
Confidence 5544
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00037 Score=52.51 Aligned_cols=79 Identities=11% Similarity=0.295 Sum_probs=60.6
Q ss_pred HHHHHHHHccccHHHHHHHHHHHHHCCC-CCchhhHHHHHHHHHHcC--------CHHHHHHHHHHHHHcCCCCCHHHHH
Q 008265 367 STIVKVFADAKWWQMALKVKEDMLSAGV-TPNTITWSSLINACANAG--------LVEQAMHLFEEMLQAGCEPNSQCCN 437 (572)
Q Consensus 367 ~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~~~~~~p~~~~~~ 437 (572)
...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. ++-+.+.+++.|...+++|+..||+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4445566666888888888888888888 788888888888777653 2446778888888888888888888
Q ss_pred HHHHHHHH
Q 008265 438 ILLQACVE 445 (572)
Q Consensus 438 ~li~~~~~ 445 (572)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 88887654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00097 Score=64.29 Aligned_cols=128 Identities=13% Similarity=0.102 Sum_probs=103.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHH
Q 008265 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (572)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 402 (572)
+......++..+...++++.|..+|+++.+ ..|+. ...++..+...++-.+|.+++++..+.. +-+...+.
T Consensus 168 ~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~------~~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~ 238 (395)
T PF09295_consen 168 NNYLVDTLLKYLSLTQRYDEAIELLEKLRE------RDPEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLN 238 (395)
T ss_pred chHHHHHHHHHHhhcccHHHHHHHHHHHHh------cCCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 345566777888888999999999999986 34654 4457788888888999999999988653 22566677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhh
Q 008265 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (572)
Q Consensus 403 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (572)
.-...|.+.++.+.|+++.+++.+.. +-+..+|..|..+|.+.|+++.|+..++.+.
T Consensus 239 ~Qa~fLl~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 239 LQAEFLLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 67777889999999999999999873 3355699999999999999999999998775
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.039 Score=53.73 Aligned_cols=358 Identities=9% Similarity=-0.024 Sum_probs=187.3
Q ss_pred HhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHH
Q 008265 79 SKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLL 158 (572)
Q Consensus 79 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l 158 (572)
.+....|++++|+.+|-+.+...+. + --.|++-..+|...|++++|+.=-.+-.+ +.|+ |...|.-.
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~-n-------hvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~---w~kgy~r~ 76 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPT-N-------HVLYSNRSAAYASLGSYEKALKDATKTRR--LNPD---WAKGYSRK 76 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCC-c-------cchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCc---hhhHHHHh
Confidence 4566789999999999988876433 2 12255566678889999888765555444 3564 44455544
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhh------cCCCc--------hhHH
Q 008265 159 KNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYAC------IVPRA--------DILF 224 (572)
Q Consensus 159 ~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~------~~~~~--------~~~~ 224 (572)
-.+..+ .|++++|+.-|.+=++. .|++...++.+.+++...... -+.|. .+..+ ...|
T Consensus 77 Gaa~~~---lg~~~eA~~ay~~GL~~--d~~n~~L~~gl~~a~~~~~~~---~~~~~~p~~~~~l~~~p~t~~~~~~~~~ 148 (539)
T KOG0548|consen 77 GAALFG---LGDYEEAILAYSEGLEK--DPSNKQLKTGLAQAYLEDYAA---DQLFTKPYFHEKLANLPLTNYSLSDPAY 148 (539)
T ss_pred HHHHHh---cccHHHHHHHHHHHhhc--CCchHHHHHhHHHhhhHHHHh---hhhccCcHHHHHhhcChhhhhhhccHHH
Confidence 444444 58999999999886653 456656666666665211000 11110 00000 0112
Q ss_pred HHHHHHHHhc----------CCHHHHHHHHHHH-----HhcC-------CCC----------------------cHHHHH
Q 008265 225 CNFVREFGKK----------RDLVSALRAYDAS-----KKHL-------SSP----------------------NMYICR 260 (572)
Q Consensus 225 ~~li~~~~~~----------g~~~~a~~~~~~m-----~~~~-------~~~----------------------~~~~~~ 260 (572)
..++..+-+. ..+..+.-++... ...| ..| -..-..
T Consensus 149 ~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek 228 (539)
T KOG0548|consen 149 VKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEK 228 (539)
T ss_pred HHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHH
Confidence 2222111110 0011111111000 0000 001 112345
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-hc---------CChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 008265 261 TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV-NA---------HDLKFTLEVYKNMQKLGVMADMASYNIL 330 (572)
Q Consensus 261 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~---------~~~~~a~~~~~~m~~~~~~~~~~~~~~l 330 (572)
.+.++..+..+++.|.+-+....... ...+|...+.+ +. +..+.|.+.-.++... .+.=...+..+
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~---~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad-~klIak~~~r~ 304 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELA---TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRAD-YKLIAKALARL 304 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHh---hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHH-HHHHHHHHHHh
Confidence 56666667777777777777766552 33333333332 22 2222222222222210 00000111223
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHhC--------------------CCCCCHH-HHHHHHHHHHccccHHHHHHHHHHH
Q 008265 331 LKACCLAGNTVLAQEIYGEVKHLEAKG--------------------VLKLDVF-TYSTIVKVFADAKWWQMALKVKEDM 389 (572)
Q Consensus 331 l~~~~~~g~~~~a~~~~~~~~~~~~~~--------------------~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m 389 (572)
..+|.+.++.+.++..|.+.....+.+ .+.|... -.-.-...+++.|++..|+..+.++
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteA 384 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEA 384 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 335555666666666666544311000 0112211 0111134567889999999999999
Q ss_pred HHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhcc
Q 008265 390 LSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463 (572)
Q Consensus 390 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 463 (572)
.+... -|...|....-+|.+.|.+..|+.-.+...+.. ++....|.-=..++.-..+++.|.+.|++-.+.+
T Consensus 385 Ikr~P-~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 385 IKRDP-EDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HhcCC-chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 88863 367889889999999999998888777776652 2233344444445555667888888888776655
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.81 E-value=2.8e-05 Score=44.77 Aligned_cols=27 Identities=33% Similarity=0.630 Sum_probs=11.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 401 WSSLINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 401 ~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
|+.+|++|++.|++++|.++|++|.+.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 444444444444444444444444433
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0011 Score=54.25 Aligned_cols=99 Identities=10% Similarity=0.050 Sum_probs=84.1
Q ss_pred CHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008265 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441 (572)
Q Consensus 362 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 441 (572)
+......+...+...|++++|.+.|+.+...+. .+...|..+...+...|++++|..+++...+.+ +.+...+..+..
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~ 93 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAE 93 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHH
Confidence 345667777888999999999999999988643 367888889999999999999999999988765 556788888888
Q ss_pred HHHHhCCHhHHHHHHHHhhhc
Q 008265 442 ACVEACQFDRAFRLFRSWTLS 462 (572)
Q Consensus 442 ~~~~~g~~~~A~~~~~~m~~~ 462 (572)
.+...|++++|...|++..+.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999987753
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.77 E-value=3.4e-05 Score=44.42 Aligned_cols=30 Identities=23% Similarity=0.499 Sum_probs=23.6
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHCCC
Q 008265 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGV 394 (572)
Q Consensus 365 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 394 (572)
+|+.+|++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 678888888888888888888888877663
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0018 Score=53.76 Aligned_cols=126 Identities=14% Similarity=0.157 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCch--h
Q 008265 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD---VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT--I 399 (572)
Q Consensus 325 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~ 399 (572)
..|..++..+ ..++...+...++.+... . +.+ ....-.+...+...|++++|...|+........|+. .
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~---~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~ 86 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKD---Y--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPL 86 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHH---C--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHH
Confidence 3455566555 488889998889888862 1 222 234444567788999999999999999987633322 2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHH
Q 008265 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (572)
Q Consensus 400 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 458 (572)
....+...+...|++++|+..++...... .....+....+.+.+.|++++|...|+.
T Consensus 87 a~l~LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 87 ARLRLARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 44557788889999999999997754433 3345667788889999999999999975
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.042 Score=52.28 Aligned_cols=95 Identities=19% Similarity=0.194 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHCC-CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHH
Q 008265 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAG-VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC-NILL 440 (572)
Q Consensus 363 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~li 440 (572)
..+|...|.+--+...++.|..+|-+..+.| +.+++..++++|..++. |+...|..+|+.-... -||...| .-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3567788888888888999999999999998 67888999999998776 6778899999876654 4555444 4556
Q ss_pred HHHHHhCCHhHHHHHHHHhh
Q 008265 441 QACVEACQFDRAFRLFRSWT 460 (572)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~m~ 460 (572)
.-+...++-+.|..+|+.-.
T Consensus 474 ~fLi~inde~naraLFetsv 493 (660)
T COG5107 474 LFLIRINDEENARALFETSV 493 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhH
Confidence 66778899999999998543
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.022 Score=50.38 Aligned_cols=47 Identities=9% Similarity=0.021 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008265 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (572)
Q Consensus 305 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 352 (572)
..+|.-+|++|-+. ..|+..+.+....++...|++++|..++++...
T Consensus 189 ~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~ 235 (299)
T KOG3081|consen 189 IQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD 235 (299)
T ss_pred hhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence 44444444444321 234444455444455555555555555555443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0011 Score=64.14 Aligned_cols=117 Identities=15% Similarity=0.203 Sum_probs=96.9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHC--CCCCchhhHHHHHHHHHHcCCHHHHHHHHHH
Q 008265 346 IYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA--GVTPNTITWSSLINACANAGLVEQAMHLFEE 423 (572)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 423 (572)
++..|.+.-..+ .+.+......+++.+....+++.+..++.+.+.. ....-..|..++|+.|...|..++++++++.
T Consensus 50 ~~~~l~~k~~~~-~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n 128 (429)
T PF10037_consen 50 LYSELDKKFERK-KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKN 128 (429)
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhC
Confidence 444444432222 4667788889999999999999999999999876 2222345667999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhcc
Q 008265 424 MLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463 (572)
Q Consensus 424 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 463 (572)
=...|+-||..+++.||+.+.+.|++..|.++...|...+
T Consensus 129 ~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe 168 (429)
T PF10037_consen 129 RLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQE 168 (429)
T ss_pred hhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999998887554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.014 Score=56.08 Aligned_cols=179 Identities=13% Similarity=0.025 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHHhC--CCCCCHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 008265 272 YMKSRAIYEDLRSQ--NVTLNIYVFNSLMNVNA-HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348 (572)
Q Consensus 272 ~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~-~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 348 (572)
+.++...-+.+... .-.|+...+...+.+.. .........+..+... ..-...-|.. ...+...|.+++|+..+.
T Consensus 253 Ia~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~aa~YG~-A~~~~~~~~~d~A~~~l~ 330 (484)
T COG4783 253 IADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSK-RGGLAAQYGR-ALQTYLAGQYDEALKLLQ 330 (484)
T ss_pred HHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhC-ccchHHHHHH-HHHHHHhcccchHHHHHH
Confidence 33444444444422 22455666666666533 2222222222222221 1112223333 345667899999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCc-hhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 349 EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN-TITWSSLINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
.+... .+-|...+......+.+.++.++|.+.++.+... .|+ ...+-.+..+|.+.|+..+|..+++.....
T Consensus 331 ~L~~~-----~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~ 403 (484)
T COG4783 331 PLIAA-----QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN 403 (484)
T ss_pred HHHHh-----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Confidence 98863 3556677788888999999999999999999987 666 566777889999999999999999999876
Q ss_pred CCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhh
Q 008265 428 GCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (572)
Q Consensus 428 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (572)
. +-|...|..|.++|...|+..+|..-..+..
T Consensus 404 ~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 404 D-PEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred C-CCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 4 6688999999999999999999888877654
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.13 Score=53.37 Aligned_cols=225 Identities=14% Similarity=0.156 Sum_probs=125.2
Q ss_pred hhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHh
Q 008265 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (572)
Q Consensus 123 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 202 (572)
....+++..|+.-..++.+. .||. .+...++++ .+.+.|+.++|..+++.....+ +++
T Consensus 19 ~ld~~qfkkal~~~~kllkk--~Pn~-----~~a~vLkaL-sl~r~gk~~ea~~~Le~~~~~~--~~D------------ 76 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKK--HPNA-----LYAKVLKAL-SLFRLGKGDEALKLLEALYGLK--GTD------------ 76 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHH--CCCc-----HHHHHHHHH-HHHHhcCchhHHHHHhhhccCC--CCc------------
Confidence 34667777788777777776 5654 233333333 2356778888887777665332 222
Q ss_pred cCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008265 203 NKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282 (572)
Q Consensus 203 ~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m 282 (572)
+.+...+-..|...|+.++|..+|+...+. -|+......+..+|.+-+++.+-.+.--+|
T Consensus 77 ------------------~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~L 136 (932)
T KOG2053|consen 77 ------------------DLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQL 136 (932)
T ss_pred ------------------hHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777777777777777777664 355666666667777777665544443333
Q ss_pred HhCCCCCCHHHHHHHHHHhc----C--------ChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008265 283 RSQNVTLNIYVFNSLMNVNA----H--------DLKFTLEVYKNMQKLG-VMADMASYNILLKACCLAGNTVLAQEIYGE 349 (572)
Q Consensus 283 ~~~g~~p~~~~~~~ll~~~~----~--------~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 349 (572)
-+. .+-+.+.|=+++.... + -...|...++.+.+.+ .--+..-.-.-+..+...|++++|..++..
T Consensus 137 yK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~ 215 (932)
T KOG2053|consen 137 YKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAI 215 (932)
T ss_pred HHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 332 2223344444443321 1 1223455555555433 211222223333445566777777777732
Q ss_pred -HHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCC
Q 008265 350 -VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394 (572)
Q Consensus 350 -~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 394 (572)
..+.. ..-+...-+--+..+...++|.+..++-.++...|.
T Consensus 216 ~la~~l----~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 216 TLAEKL----TSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HHHHhc----cccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 22210 222333444556667777777777777777777643
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.005 Score=48.92 Aligned_cols=101 Identities=11% Similarity=-0.048 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCC--CchhhHHH
Q 008265 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT--PNTITWSS 403 (572)
Q Consensus 326 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p~~~~~~~ 403 (572)
++..+...+.+.|++++|...|..+...... .......+..+..++.+.|++++|...|+.+...... .....+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPK--STYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--ccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4556667778888888888888888763100 0111345666788888888888888888888765221 11345677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC
Q 008265 404 LINACANAGLVEQAMHLFEEMLQAG 428 (572)
Q Consensus 404 li~~~~~~g~~~~a~~~~~~m~~~~ 428 (572)
+..++.+.|+.++|...++++.+..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHC
Confidence 7778888888888888888888763
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.059 Score=47.40 Aligned_cols=183 Identities=13% Similarity=0.105 Sum_probs=115.0
Q ss_pred CCHHHHHHHHHHHHhc---C-CCCcHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHhcCChH
Q 008265 235 RDLVSALRAYDASKKH---L-SSPNMY-ICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN---IYVFNSLMNVNAHDLK 306 (572)
Q Consensus 235 g~~~~a~~~~~~m~~~---~-~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~ 306 (572)
.+.++..+++..+... | ..++.. .|..++-+...+|+.+.|...++.+..+= |. +.-+..++---.|+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchh
Confidence 4556666666655322 3 344543 45566666777788888888888777652 32 2233333333347778
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHH
Q 008265 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK 386 (572)
Q Consensus 307 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 386 (572)
+|.++++.+.+.+ +-|..++.-=+...-..|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.+
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-----F~~D~EAW~eLaeiY~~~~~f~kA~fCl 177 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-----FMNDQEAWHELAEIYLSEGDFEKAAFCL 177 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-----hcCcHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 8888888887765 335666665555666667777777777766654 5678888888888888888888888888
Q ss_pred HHHHHCCCCCch-hhHHHHHHHHHH---cCCHHHHHHHHHHHHHc
Q 008265 387 EDMLSAGVTPNT-ITWSSLINACAN---AGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 387 ~~m~~~g~~p~~-~~~~~li~~~~~---~g~~~~a~~~~~~m~~~ 427 (572)
+++.-. .|.. -.+..+...+-- ..+++.+.++|.+..+.
T Consensus 178 EE~ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 178 EELLLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 888765 3433 333333333322 23456677777777765
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0026 Score=54.54 Aligned_cols=102 Identities=18% Similarity=0.237 Sum_probs=68.6
Q ss_pred CCCHHHHHHHHHHHHc-----cccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHc----------------CCHHHHH
Q 008265 360 KLDVFTYSTIVKVFAD-----AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA----------------GLVEQAM 418 (572)
Q Consensus 360 ~~~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~----------------g~~~~a~ 418 (572)
..+..+|..++..|.+ .|..+=....+..|.+-|+..|..+|+.|++.+=+. .+-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 3455566666666653 355565666666667777777777777777665331 2456789
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHhCC-HhHHHHHHHHhhh
Q 008265 419 HLFEEMLQAGCEPNSQCCNILLQACVEACQ-FDRAFRLFRSWTL 461 (572)
Q Consensus 419 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~ 461 (572)
+++++|...|+-||..|+..|++.|.+.+. ..+..++.--|.+
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpk 167 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPK 167 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 999999999999999999999999877665 3444444444443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.008 Score=49.84 Aligned_cols=14 Identities=7% Similarity=0.076 Sum_probs=5.2
Q ss_pred HHHccccHHHHHHH
Q 008265 372 VFADAKWWQMALKV 385 (572)
Q Consensus 372 ~~~~~g~~~~a~~~ 385 (572)
.|.+.|++++|...
T Consensus 127 i~~~~g~~~~A~~~ 140 (145)
T PF09976_consen 127 IYLAQGDYDEARAA 140 (145)
T ss_pred HHHHCCCHHHHHHH
Confidence 33333333333333
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.14 Score=50.21 Aligned_cols=117 Identities=18% Similarity=0.162 Sum_probs=82.7
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCC-chhhHHHHHHHHHHcCCHHHHH
Q 008265 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP-NTITWSSLINACANAGLVEQAM 418 (572)
Q Consensus 340 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~ 418 (572)
.+....+++++.... ...| ..+|..+|+.--+...+..|..+|.+..+.+..+ ++..++++|..||. ++.+-|.
T Consensus 347 ~~~~~~~~~~ll~~~---~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~Af 421 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIE---DIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAF 421 (656)
T ss_pred hhhhHHHHHHHHhhh---ccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHH
Confidence 444555565555432 1233 3467778888888888899999999998887777 67778888887776 6778888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhc
Q 008265 419 HLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (572)
Q Consensus 419 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 462 (572)
++|+.-.+. +.-+..-....++-+...++-..|..+|++....
T Consensus 422 rIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 422 RIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 988876554 1223334456777788888888899999887654
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0022 Score=54.98 Aligned_cols=114 Identities=13% Similarity=0.186 Sum_probs=76.4
Q ss_pred hHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008265 222 ILFCNFVREFGK-----KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS 296 (572)
Q Consensus 222 ~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 296 (572)
.+|..+++.|.+ .|.++-....+..|.+.|+.-|..+|+.||+.+-+ |.+- ....+.+
T Consensus 48 ~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv----------------p~n~fQ~ 110 (228)
T PF06239_consen 48 ATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV----------------PRNFFQA 110 (228)
T ss_pred HHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc----------------cccHHHH
Confidence 455566666654 47788888888888888998899999998887654 3221 1122223
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHH
Q 008265 297 LMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT-VLAQEIYGEVKH 352 (572)
Q Consensus 297 ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~ 352 (572)
+..-|-.+-+-|++++++|...|+-||..|+..+++.+.+.+.. .+..++.=.|.+
T Consensus 111 ~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpk 167 (228)
T PF06239_consen 111 EFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPK 167 (228)
T ss_pred HhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 33334456677888888888888888888888888888766653 233333333433
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0032 Score=47.36 Aligned_cols=89 Identities=18% Similarity=0.203 Sum_probs=39.8
Q ss_pred HHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC
Q 008265 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448 (572)
Q Consensus 369 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 448 (572)
+...+...|++++|...+++..+.... +...+..+...+...|++++|.+.++...+.. +.+..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHh
Confidence 333444444555555555444433111 22334444444444455555555555544432 2222344444445555555
Q ss_pred HhHHHHHHHHh
Q 008265 449 FDRAFRLFRSW 459 (572)
Q Consensus 449 ~~~A~~~~~~m 459 (572)
++.|...+...
T Consensus 84 ~~~a~~~~~~~ 94 (100)
T cd00189 84 YEEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHHH
Confidence 55555555443
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0045 Score=46.49 Aligned_cols=95 Identities=20% Similarity=0.145 Sum_probs=73.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHH
Q 008265 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406 (572)
Q Consensus 327 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 406 (572)
+..+...+...|++++|...++.+.+. .+.+...+..+...+...|++++|.+.++...+.... +..++..+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 76 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL-----DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGL 76 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc-----CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHH
Confidence 455667778889999999999988763 1334467777888888899999999999988876432 4467788888
Q ss_pred HHHHcCCHHHHHHHHHHHHHc
Q 008265 407 ACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 407 ~~~~~g~~~~a~~~~~~m~~~ 427 (572)
.+...|+.++|...+....+.
T Consensus 77 ~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 77 AYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHHHhHHHHHHHHHHHHcc
Confidence 889999999999998887654
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00053 Score=50.65 Aligned_cols=80 Identities=16% Similarity=0.195 Sum_probs=31.7
Q ss_pred CChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHH
Q 008265 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQA 417 (572)
Q Consensus 338 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 417 (572)
|+++.|+.+++++.+.... .++...+..+..+|.+.|++++|.++++. .+.+.. +....-.+..+|.+.|++++|
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~---~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPT---NPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCG---THHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHH
T ss_pred ccHHHHHHHHHHHHHHCCC---ChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHH
Confidence 4455555555555542100 01222333344555555555555555544 111111 112222334444555555555
Q ss_pred HHHHH
Q 008265 418 MHLFE 422 (572)
Q Consensus 418 ~~~~~ 422 (572)
.+.++
T Consensus 78 i~~l~ 82 (84)
T PF12895_consen 78 IKALE 82 (84)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55444
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.14 Score=48.45 Aligned_cols=108 Identities=17% Similarity=0.199 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHH
Q 008265 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405 (572)
Q Consensus 326 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 405 (572)
+.+..|.-+...|+...|.++-.+.+ .|+..-|-..+.+++..++|++..++... +..++-|...+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk--------v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv 244 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK--------VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFV 244 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC--------CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHH
Confidence 34444555566666666666655543 35666666666666666666665554322 12345566666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHH
Q 008265 406 NACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457 (572)
Q Consensus 406 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 457 (572)
.+|.+.|...+|..+...+ + +..-+..|.++|++.+|.+.--
T Consensus 245 ~~~~~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 245 EACLKYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HHHHHCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHH
Confidence 6666666666666655551 1 2334555666666666655543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0065 Score=56.61 Aligned_cols=130 Identities=12% Similarity=0.102 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008265 257 YICRTIIDVCGICGDYMKSRAIYEDLRSQN-VTLNIYVFNSLMNVNA-HDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334 (572)
Q Consensus 257 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~-~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 334 (572)
.+|..+|+...+.+..+.|..+|.+.++.+ ...+.+...++|.-++ ++.+.|..+|+...+. +..+...|...++.+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 467888888888888888888888888653 3456667777776664 5666788888888765 344677788888888
Q ss_pred HHcCChHHHHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHccccHHHHHHHHHHHHHC
Q 008265 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLD---VFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (572)
Q Consensus 335 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 392 (572)
.+.|+.+.+..+|+..... +.++ ...|...+..=.+.|+++.+..+.+.+.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-----l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-----LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-----SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-----cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8999999999999888752 2222 247888888888888888888888888765
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0063 Score=48.36 Aligned_cols=98 Identities=13% Similarity=0.010 Sum_probs=78.9
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHCCCCCc----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHH
Q 008265 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN----TITWSSLINACANAGLVEQAMHLFEEMLQAGC--EPNSQCCNI 438 (572)
Q Consensus 365 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~ 438 (572)
++..+...+.+.|++++|.+.|..+.... |+ ...+..+..++.+.|++++|...|+.+....- ......+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 55667778889999999999999998763 33 34566788999999999999999999987521 112456778
Q ss_pred HHHHHHHhCCHhHHHHHHHHhhhccc
Q 008265 439 LLQACVEACQFDRAFRLFRSWTLSKT 464 (572)
Q Consensus 439 li~~~~~~g~~~~A~~~~~~m~~~~~ 464 (572)
+..++.+.|+.++|...++++.+..+
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCc
Confidence 88889999999999999999887643
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.3 Score=50.89 Aligned_cols=68 Identities=19% Similarity=0.229 Sum_probs=48.4
Q ss_pred HHHHHHHHHHcCCHHH---HHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhcccccccc
Q 008265 401 WSSLINACANAGLVEQ---AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALG 469 (572)
Q Consensus 401 ~~~li~~~~~~g~~~~---a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 469 (572)
.+.|++.|.+.++... |+-+++...... +-|..+--.+|..|+-.|-+..|.++|..+.-..++.+..
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTl 509 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTL 509 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccc
Confidence 4678888888888764 333344433332 3455666788999999999999999999988777665543
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.13 Score=54.10 Aligned_cols=163 Identities=12% Similarity=0.027 Sum_probs=121.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008265 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV 300 (572)
Q Consensus 221 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 300 (572)
...|..|...|+..-+...|...|+...+... -+...+....+.|++..+++.|..+.-..-+. -+.....++.+-.+
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~l~~~qk-a~a~~~k~nW~~rG 569 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEICLRAAQK-APAFACKENWVQRG 569 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHHHHHhhh-chHHHHHhhhhhcc
Confidence 37899999999999999999999999877532 35678889999999999999999993222222 12233444444443
Q ss_pred ----hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHc
Q 008265 301 ----NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF-TYSTIVKVFAD 375 (572)
Q Consensus 301 ----~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~ 375 (572)
-+++...+..-|+...+..++ |...|..+..+|..+|++..|.++|.+... +.|+.. .---....-+.
T Consensus 570 ~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~------LrP~s~y~~fk~A~~ecd 642 (1238)
T KOG1127|consen 570 PYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASL------LRPLSKYGRFKEAVMECD 642 (1238)
T ss_pred ccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHh------cCcHhHHHHHHHHHHHHH
Confidence 236788888889888876554 788999999999999999999999999886 455432 21222234567
Q ss_pred cccHHHHHHHHHHHHHC
Q 008265 376 AKWWQMALKVKEDMLSA 392 (572)
Q Consensus 376 ~g~~~~a~~~~~~m~~~ 392 (572)
.|.+.+|+..+......
T Consensus 643 ~GkYkeald~l~~ii~~ 659 (1238)
T KOG1127|consen 643 NGKYKEALDALGLIIYA 659 (1238)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 89999999988887643
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.12 Score=45.60 Aligned_cols=140 Identities=8% Similarity=0.065 Sum_probs=96.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-
Q 008265 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV- 300 (572)
Q Consensus 222 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~- 300 (572)
.+.+.++....-.|.+.-...++++..+...+.+......+.+.-.+.|+.+.|...|++..+..-+.|..+++.++.-
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 5677788888888999999999999988877778888889999999999999999999988766444555555554431
Q ss_pred ----h--cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008265 301 ----N--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368 (572)
Q Consensus 301 ----~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (572)
+ ++++-.|...+.++...... |....|.=.-+..-.|+..+|.+..+.+.+ ..|...+-++
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~------~~P~~~l~es 324 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQ------QDPRHYLHES 324 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhc------cCCccchhhh
Confidence 2 24677777777777654322 344433322233345777888888887776 3455544443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0078 Score=56.08 Aligned_cols=130 Identities=10% Similarity=0.113 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHH
Q 008265 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404 (572)
Q Consensus 325 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 404 (572)
.+|..++...-+.+..+.|..+|.+..+ .+....+++...+++..+ ..++.+.|..+|+...+. +..+...|...
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~---~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y 76 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARK---DKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKK-FPSDPDFWLEY 76 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHH-HTT-HHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH-CCCCHHHHHHH
Confidence 3566677777777777777777777764 232233333334443322 245566677777777665 33355667777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 405 INACANAGLVEQAMHLFEEMLQAGCEPNS----QCCNILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 405 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
+..+.+.++.+.|..+|++.... .|.. ..|...++-=.+.|+++.+.++.+++.+
T Consensus 77 ~~~l~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 77 LDFLIKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHHHHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777777777654 2333 3677777777777777777777776654
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.058 Score=50.50 Aligned_cols=175 Identities=15% Similarity=0.102 Sum_probs=86.5
Q ss_pred hhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcch
Q 008265 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (572)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 149 (572)
....|......|-..|++++|.+.|...-.......... -....+......+ +..++++|++.+++...
T Consensus 34 Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~--~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~-------- 102 (282)
T PF14938_consen 34 AADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKF--EAAKAYEEAANCY-KKGDPDEAIECYEKAIE-------- 102 (282)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HH--HHHHHHHHHHHHH-HHTTHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHH-HhhCHHHHHHHHHHHHH--------
Confidence 467788888888888999999888887754322111000 0122222222222 22255555555544322
Q ss_pred hhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcC-CChHHHHHhhhcC-------CCc-
Q 008265 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNK-PDVNLAIRYACIV-------PRA- 220 (572)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-g~~~~a~~~~~~~-------~~~- 220 (572)
.+.+.|++..|-.++..+ ...|... |+++.|++.|... ...
T Consensus 103 --------------~y~~~G~~~~aA~~~~~l----------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~ 152 (282)
T PF14938_consen 103 --------------IYREAGRFSQAAKCLKEL----------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPH 152 (282)
T ss_dssp --------------HHHHCT-HHHHHHHHHHH----------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HH
T ss_pred --------------HHHhcCcHHHHHHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChh
Confidence 233456666665555443 3444455 5666666655432 100
Q ss_pred --hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----CcHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008265 221 --DILFCNFVREFGKKRDLVSALRAYDASKKHLSS-----PNMY-ICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (572)
Q Consensus 221 --~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-----~~~~-~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 285 (572)
...+..+...+.+.|++++|.++|+++...... .+.. .|-..+-++...|+.-.|.+.|++....
T Consensus 153 ~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 153 SAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 134555666677777777777777766543211 1111 1112222445556677777777666543
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.1 Score=48.84 Aligned_cols=207 Identities=10% Similarity=0.065 Sum_probs=113.5
Q ss_pred HhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHH
Q 008265 116 VASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEF 195 (572)
Q Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 195 (572)
+......|-..|++++|.+.|.+..+.-...+.. ...-..+..+...+ +..++++|+..++
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~--~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~---------------- 98 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDK--FEAAKAYEEAANCY-KKGDPDEAIECYE---------------- 98 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-H--HHHHHHHHHHHHHH-HHTTHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHH-HhhCHHHHHHHHH----------------
Confidence 4444455677888888888887765542111110 01112222221111 2235555554444
Q ss_pred HHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhc-CCHHHHHHHHHHHHhc----CCCC-cHHHHHHHHHHHHhc
Q 008265 196 RIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKK-RDLVSALRAYDASKKH----LSSP-NMYICRTIIDVCGIC 269 (572)
Q Consensus 196 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~ 269 (572)
..+..|...|++..|-+ .+..+...|-.. |++++|.+.|.+..+. |-.- -..++..+...+.+.
T Consensus 99 ~A~~~y~~~G~~~~aA~----------~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 99 KAIEIYREAGRFSQAAK----------CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL 168 (282)
T ss_dssp HHHHHHHHCT-HHHHHH----------HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCcHHHHHH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh
Confidence 34566778888887755 556778888888 8999999999876442 2111 134667778889999
Q ss_pred CCHHHHHHHHHHHHhCCCC-----CCHH--HHHHHHH-HhcCChHHHHHHHHHHHHc--CCCCC--HHHHHHHHHHHHH-
Q 008265 270 GDYMKSRAIYEDLRSQNVT-----LNIY--VFNSLMN-VNAHDLKFTLEVYKNMQKL--GVMAD--MASYNILLKACCL- 336 (572)
Q Consensus 270 g~~~~a~~~~~~m~~~g~~-----p~~~--~~~~ll~-~~~~~~~~a~~~~~~m~~~--~~~~~--~~~~~~ll~~~~~- 336 (572)
|++++|.++|++....-.. .+.. .+..+|. .+.||...|...++..... ++..+ ......||.+|-.
T Consensus 169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~ 248 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEG 248 (282)
T ss_dssp T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhC
Confidence 9999999999998765322 1221 2233333 2447888888888887653 22222 2344556666543
Q ss_pred -cCChHHHHHHHHHHH
Q 008265 337 -AGNTVLAQEIYGEVK 351 (572)
Q Consensus 337 -~g~~~~a~~~~~~~~ 351 (572)
...+.++..-|+.+.
T Consensus 249 D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 249 DVEAFTEAVAEYDSIS 264 (282)
T ss_dssp -CCCHHHHCHHHTTSS
T ss_pred CHHHHHHHHHHHcccC
Confidence 223445555554443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0012 Score=48.74 Aligned_cols=81 Identities=20% Similarity=0.317 Sum_probs=59.8
Q ss_pred cccHHHHHHHHHHHHHCCCC-CchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHH
Q 008265 376 AKWWQMALKVKEDMLSAGVT-PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454 (572)
Q Consensus 376 ~g~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 454 (572)
.|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|.++++. .+.+ ..+....-.+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 57899999999999887432 2455566689999999999999999988 3322 1233444556788999999999999
Q ss_pred HHHH
Q 008265 455 LFRS 458 (572)
Q Consensus 455 ~~~~ 458 (572)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 9875
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.17 Score=45.94 Aligned_cols=186 Identities=8% Similarity=-0.019 Sum_probs=107.1
Q ss_pred HHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhh
Q 008265 73 YYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDG 152 (572)
Q Consensus 73 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 152 (572)
.+-.....+...|++++|++.|+.+....+... ....+...+..++.+.+++++|+..+++..+. .|+.. .
T Consensus 34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~-----~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~--~ 104 (243)
T PRK10866 34 EIYATAQQKLQDGNWKQAITQLEALDNRYPFGP-----YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHP--N 104 (243)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh-----HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCC--c
Confidence 333455566779999999999999998755432 22444556778899999999999999999887 44332 1
Q ss_pred hhhHHHHHHHHHH-----------------hhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhh
Q 008265 153 SGFKLLKNECQRL-----------------LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYAC 215 (572)
Q Consensus 153 ~~~~~l~~~~~~~-----------------~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 215 (572)
.-+..++.+.+.+ .+......|+..|+.+.+.- |+ ..-..+|.....
T Consensus 105 ~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y--P~--------------S~ya~~A~~rl~ 168 (243)
T PRK10866 105 IDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY--PN--------------SQYTTDATKRLV 168 (243)
T ss_pred hHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC--cC--------------ChhHHHHHHHHH
Confidence 1222333322210 01111234445555444421 22 222233332222
Q ss_pred cCCCch-hHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008265 216 IVPRAD-ILFCNFVREFGKKRDLVSALRAYDASKKH--LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283 (572)
Q Consensus 216 ~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 283 (572)
.+...- ..--.+...|.+.|.+..|..-|+.+.+. +.+........++.+|.+.|..++|.+....+.
T Consensus 169 ~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 169 FLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 111110 11113566677778888887777777765 223344566677777888888877777665554
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.45 Score=48.15 Aligned_cols=77 Identities=12% Similarity=0.085 Sum_probs=44.9
Q ss_pred HHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 008265 197 IVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276 (572)
Q Consensus 197 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 276 (572)
.+..+.+...+++-+.+...+|++......+..++...|.-++|.+.|-+-.. | ...+..|...++|.+|.
T Consensus 828 ~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW~~av 898 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQWGEAV 898 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHHHHHHH
Confidence 34444455555555555555666666677777777777777777666533211 2 23345566666777776
Q ss_pred HHHHHH
Q 008265 277 AIYEDL 282 (572)
Q Consensus 277 ~~~~~m 282 (572)
++-+..
T Consensus 899 elaq~~ 904 (1189)
T KOG2041|consen 899 ELAQRF 904 (1189)
T ss_pred HHHHhc
Confidence 665544
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.026 Score=54.64 Aligned_cols=29 Identities=7% Similarity=0.122 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 008265 531 RVKALMNEMRTVGLSPNHISWTILIDACGGSG 562 (572)
Q Consensus 531 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 562 (572)
....+|+.|-..| |..|-.+|+..|..+|
T Consensus 297 ~~~~~f~~iY~~~---d~d~rram~KSf~eS~ 325 (356)
T PLN03088 297 ALNKFFREIYQNA---DEDTRRAMMKSFVESN 325 (356)
T ss_pred HHHHHHHHHHhcC---CHHHHHHHHHHhhhcC
Confidence 4556788777754 8888888998888765
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.021 Score=55.33 Aligned_cols=91 Identities=12% Similarity=0.097 Sum_probs=59.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHH
Q 008265 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410 (572)
Q Consensus 331 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 410 (572)
...+...|++++|+..|+++.+.. +.+...|..+..+|.+.|++++|+..++++.+.... +...|..+..+|..
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-----P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~ 82 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-----PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHH
Confidence 344556677777777777776631 334556666667777777777777777777665321 44556666667777
Q ss_pred cCCHHHHHHHHHHHHHc
Q 008265 411 AGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 411 ~g~~~~a~~~~~~m~~~ 427 (572)
.|++++|...|++..+.
T Consensus 83 lg~~~eA~~~~~~al~l 99 (356)
T PLN03088 83 LEEYQTAKAALEKGASL 99 (356)
T ss_pred hCCHHHHHHHHHHHHHh
Confidence 77777777777777664
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.099 Score=46.15 Aligned_cols=180 Identities=11% Similarity=0.009 Sum_probs=97.1
Q ss_pred hhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchh
Q 008265 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (572)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 150 (572)
...+-.....+...|++.+|++.|+.+....+... ....+...+..++.+.|+++.|...++...+. .|+...
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~-----~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~ 77 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSP-----YAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPK 77 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTST-----THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh-----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcc
Confidence 44555566778889999999999999998754321 23556667888999999999999999998886 444321
Q ss_pred hhhhhHHHHHHHHHH----------hhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCc
Q 008265 151 DGSGFKLLKNECQRL----------LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRA 220 (572)
Q Consensus 151 ~~~~~~~l~~~~~~~----------~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 220 (572)
- -...++.+.+.+ .+.+...+|+..|+.+.+. |=......+|......+...
T Consensus 78 ~--~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~----------------yP~S~y~~~A~~~l~~l~~~ 139 (203)
T PF13525_consen 78 A--DYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKR----------------YPNSEYAEEAKKRLAELRNR 139 (203)
T ss_dssp H--HHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-----------------TTSTTHHHHHHHHHHHHHH
T ss_pred h--hhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHH----------------CcCchHHHHHHHHHHHHHHH
Confidence 1 122222222221 1123344555555554432 22222333333322221110
Q ss_pred h-hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--cHHHHHHHHHHHHhcCCHHHH
Q 008265 221 D-ILFCNFVREFGKKRDLVSALRAYDASKKHLSSP--NMYICRTIIDVCGICGDYMKS 275 (572)
Q Consensus 221 ~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~--~~~~~~~ll~~~~~~g~~~~a 275 (572)
- ..--.+...|.+.|.+..|..-++.+.+.-... .....-.++.+|.+.|..+.+
T Consensus 140 la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 140 LAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 0 111225667777777777777777776652111 123456666777777766643
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.054 Score=44.93 Aligned_cols=109 Identities=19% Similarity=0.259 Sum_probs=69.4
Q ss_pred HHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCC
Q 008265 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413 (572)
Q Consensus 334 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 413 (572)
....|+.+.+...+.++..+- .|.+-++... ..-......-++.+. ......++..+...|+
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly-~G~~l~~~~~----------~~W~~~~r~~l~~~~-------~~~~~~l~~~~~~~~~ 77 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALY-RGDFLPDLDD----------EEWVEPERERLRELY-------LDALERLAEALLEAGD 77 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT---SSTTGGGTT----------STTHHHHHHHHHHHH-------HHHHHHHHHHHHHTT-
T ss_pred HHHCCCHHHHHHHHHHHHHHh-CCCCCCCCCc----------cHHHHHHHHHHHHHH-------HHHHHHHHHHHHhccC
Confidence 345677888888887777654 3433333222 111122222222221 2345667777888999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 414 VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 414 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
+++|..+...+.... +-+...|..+|.+|...|+...|.+.|+++.+
T Consensus 78 ~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 78 YEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 999999999998774 55788999999999999999999999988764
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.34 Score=45.80 Aligned_cols=86 Identities=13% Similarity=0.157 Sum_probs=68.0
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008265 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444 (572)
Q Consensus 365 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 444 (572)
+.+..|.-+...|+...|.++-.+.. -||..-|...+.+++..++|++..++... . -++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHH
Confidence 45555677778889888888877764 57999999999999999999987775432 1 23466889999999
Q ss_pred HhCCHhHHHHHHHHhh
Q 008265 445 EACQFDRAFRLFRSWT 460 (572)
Q Consensus 445 ~~g~~~~A~~~~~~m~ 460 (572)
+.|+..+|..+..++.
T Consensus 249 ~~~~~~eA~~yI~k~~ 264 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP 264 (319)
T ss_pred HCCCHHHHHHHHHhCC
Confidence 9999999999987754
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.035 Score=45.49 Aligned_cols=94 Identities=6% Similarity=-0.017 Sum_probs=65.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHH
Q 008265 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406 (572)
Q Consensus 327 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 406 (572)
.-.+..-+...|++++|..+|+.+.... +-+..-|-.|..++-..|++++|+..|.......+. |...+-.+..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~D-----p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~ 111 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYD-----AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-----cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHH
Confidence 3344455667788888888888777631 223445666667777778888888888877776543 6667777777
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 008265 407 ACANAGLVEQAMHLFEEMLQ 426 (572)
Q Consensus 407 ~~~~~g~~~~a~~~~~~m~~ 426 (572)
++...|+.+.|.+.|+....
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 88888888888888877665
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.058 Score=46.22 Aligned_cols=86 Identities=15% Similarity=0.073 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHH
Q 008265 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (572)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 402 (572)
...+..+...+...|++++|...|++....... .+ ....+..+...+.+.|++++|...+.+....... +...+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~ 110 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEED---PNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALN 110 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc---cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHH
Confidence 345667777788889999999999988763211 11 1357788888889999999999999988876322 445566
Q ss_pred HHHHHHHHcCC
Q 008265 403 SLINACANAGL 413 (572)
Q Consensus 403 ~li~~~~~~g~ 413 (572)
.+...+...|+
T Consensus 111 ~lg~~~~~~g~ 121 (172)
T PRK02603 111 NIAVIYHKRGE 121 (172)
T ss_pred HHHHHHHHcCC
Confidence 66677777666
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.65 Score=47.57 Aligned_cols=307 Identities=13% Similarity=0.041 Sum_probs=180.4
Q ss_pred hhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHH
Q 008265 118 SGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRI 197 (572)
Q Consensus 118 ~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 197 (572)
.++..+...+.+..|+.+-+.+...-..- .. .+.-+......-. ...-+++++.+++-++.. ..+..+|..+
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~----Vl~~Wa~~kI~~~-d~~d~~vld~I~~kls~~--~~~~iSy~~i 513 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQG-DR----VLLEWARRKIKQS-DKMDEEVLDKIDEKLSAK--LTPGISYAAI 513 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCccccc-cH----HHHHHHHHHHhcc-CccchHHHHHHHHHhccc--CCCceeHHHH
Confidence 34667777888888888877764432111 11 2222221111101 122333444333322222 2445788889
Q ss_pred HHHHhcCCChHHHHHhhhcCCCch---------hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHH-----
Q 008265 198 VQLCVNKPDVNLAIRYACIVPRAD---------ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTII----- 263 (572)
Q Consensus 198 l~~~~~~g~~~~a~~~~~~~~~~~---------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll----- 263 (572)
.+.....|+.+-|..+++.=|... .-+...+.-+.+.|+.+....++-.+... .+...+...+
T Consensus 514 A~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~l~~~p~ 590 (829)
T KOG2280|consen 514 ARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMTLRNQPL 590 (829)
T ss_pred HHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHHHHhchh
Confidence 999999999999999988765543 33556778888899999888887766543 1222222222
Q ss_pred -----HHHHhc------------CCHHHHHHHHH--HHH----hCCCCCCHHHH-HHHHHHhcC--------ChHHHHHH
Q 008265 264 -----DVCGIC------------GDYMKSRAIYE--DLR----SQNVTLNIYVF-NSLMNVNAH--------DLKFTLEV 311 (572)
Q Consensus 264 -----~~~~~~------------g~~~~a~~~~~--~m~----~~g~~p~~~~~-~~ll~~~~~--------~~~~a~~~ 311 (572)
.-+++. ++-.++...|. ... ..|..|+..+- +..-..... +...-+.+
T Consensus 591 a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~l 670 (829)
T KOG2280|consen 591 ALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKL 670 (829)
T ss_pred hhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence 111221 11111111111 000 01222222211 111111111 11112223
Q ss_pred HHHHHH-cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHH
Q 008265 312 YKNMQK-LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390 (572)
Q Consensus 312 ~~~m~~-~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 390 (572)
.+.+.. .|..-...+.+--+.-+...|+..+|.++-.+.+ -||...|-.-+.+++..++|++-+++-+.++
T Consensus 671 Q~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk--------ipdKr~~wLk~~aLa~~~kweeLekfAkskk 742 (829)
T KOG2280|consen 671 QRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK--------IPDKRLWWLKLTALADIKKWEELEKFAKSKK 742 (829)
T ss_pred HHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC--------CcchhhHHHHHHHHHhhhhHHHHHHHHhccC
Confidence 333322 2333344456666777888899999999988776 5899999999999999999998887766643
Q ss_pred HCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHH
Q 008265 391 SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (572)
Q Consensus 391 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 458 (572)
...-|.-.+.+|.+.|+.++|.+++.+.... . -.+.+|.+.|++.+|.++--+
T Consensus 743 ------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 743 ------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred ------CCCCchhHHHHHHhcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHHHH
Confidence 3677888999999999999999988776421 1 567889999999998887544
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.039 Score=47.09 Aligned_cols=98 Identities=16% Similarity=0.048 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHH
Q 008265 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (572)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 403 (572)
...+..+...+...|++++|...|+....... + ......+|..+...+...|++++|++.++....... ....++..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~-~-~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~-~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI-D-PYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP-FLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc-c-chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHH
Confidence 44556666677778888888888888775310 0 001234677777788888888888888888776521 12344555
Q ss_pred HHHHHH-------HcCCHHHHHHHHHHH
Q 008265 404 LINACA-------NAGLVEQAMHLFEEM 424 (572)
Q Consensus 404 li~~~~-------~~g~~~~a~~~~~~m 424 (572)
+...+. ..|++++|...+++.
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 555555 667766555555543
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.12 Score=52.45 Aligned_cols=134 Identities=13% Similarity=0.065 Sum_probs=65.2
Q ss_pred CCCCcHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHh------cC----ChHHHHHHHHH
Q 008265 251 LSSPNMYICRTIIDVCGICG-----DYMKSRAIYEDLRSQNVTLNI-YVFNSLMNVN------AH----DLKFTLEVYKN 314 (572)
Q Consensus 251 ~~~~~~~~~~~ll~~~~~~g-----~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~------~~----~~~~a~~~~~~ 314 (572)
+.+.+...|...+++..... +.+.|.++|++..+. .|+- ..|..+..++ .. +...+.+...+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 34556777777777754332 266777777777765 4552 2232222111 11 01122222222
Q ss_pred HHHc-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHC
Q 008265 315 MQKL-GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (572)
Q Consensus 315 m~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 392 (572)
.... ....+...+.++.-.....|++++|...+++... +.|+...|..+...+...|+.++|.+.+.+....
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~------L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID------LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 1111 1122334444443344445566666666665555 3455555555555555666666666665555543
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.14 Score=48.32 Aligned_cols=137 Identities=16% Similarity=0.039 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHH----HCCC-CCchh
Q 008265 326 SYNILLKACCLAGNTVLAQEIYGEVKHLE-AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML----SAGV-TPNTI 399 (572)
Q Consensus 326 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~g~-~p~~~ 399 (572)
.|..|-+.|.-.|+++.|+...+.-..+- ..|.-......+..+..++.-.|+++.|.+.++... +.|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45566666667778887776654433211 122212234466777777777788887777666542 2221 12234
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHH----cC-CCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhc
Q 008265 400 TWSSLINACANAGLVEQAMHLFEEMLQ----AG-CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (572)
Q Consensus 400 ~~~~li~~~~~~g~~~~a~~~~~~m~~----~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 462 (572)
+..+|...|.-..++++|+.++.+-.. .+ .--....+.+|..+|...|..++|+.+.+.-.+.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 455677777777778888887776432 11 1123456778888888888888888777665443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0076 Score=42.21 Aligned_cols=64 Identities=16% Similarity=0.123 Sum_probs=48.2
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008265 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298 (572)
Q Consensus 232 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 298 (572)
.+.|++++|.++|+.+.+.... +...+..+..+|.+.|++++|.++++.+... .|+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 4678889999999988776433 6677778889999999999999999988876 46655555443
|
... |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.053 Score=44.96 Aligned_cols=71 Identities=13% Similarity=0.073 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHH
Q 008265 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS-----QNVTLNIYV 293 (572)
Q Consensus 222 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~ 293 (572)
.....++..+...|+++.|.++...+.... +.+...|..+|.+|...|+..+|.++|+.+.+ .|+.|+..+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 356667888889999999999999998863 34778999999999999999999999998853 377776554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0068 Score=42.48 Aligned_cols=52 Identities=12% Similarity=0.040 Sum_probs=24.7
Q ss_pred HcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHC
Q 008265 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (572)
Q Consensus 336 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 392 (572)
+.|++++|.++|+.+... .+-+...+..+..+|.+.|++++|.++++.+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR-----NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH-----TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345555555555555442 1224444444555555555555555555555444
|
... |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.044 Score=44.94 Aligned_cols=96 Identities=10% Similarity=0.006 Sum_probs=79.9
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008265 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444 (572)
Q Consensus 365 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 444 (572)
..-.+..-+...|++++|..+|+-+...... +..-|-.|.-+|-..|++++|+..|....... +-|...+-.+-.++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 3334455567899999999999999887543 55677888889999999999999999998876 456788888899999
Q ss_pred HhCCHhHHHHHHHHhhhc
Q 008265 445 EACQFDRAFRLFRSWTLS 462 (572)
Q Consensus 445 ~~g~~~~A~~~~~~m~~~ 462 (572)
..|+.+.|.+.|+.....
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999999987653
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.2 Score=51.05 Aligned_cols=148 Identities=13% Similarity=0.105 Sum_probs=97.1
Q ss_pred HHHHhhhcCCCchhHHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHHhc--------CCHHH
Q 008265 209 LAIRYACIVPRADILFCNFVREFGKK-----RDLVSALRAYDASKKHLSSPN-MYICRTIIDVCGIC--------GDYMK 274 (572)
Q Consensus 209 ~a~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~--------g~~~~ 274 (572)
+..+.-...+.+...|...+++.... ++.+.|.++|++..+. .|+ ...|..+..++... .++..
T Consensus 325 e~~~~~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~ 402 (517)
T PRK10153 325 MQERLQQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAA 402 (517)
T ss_pred HHHHHhccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHH
Confidence 34444455666667888877765442 2377999999999885 354 34444433333222 12334
Q ss_pred HHHHHHHHHhCC-CCCCHHHHHH--HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008265 275 SRAIYEDLRSQN-VTLNIYVFNS--LMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351 (572)
Q Consensus 275 a~~~~~~m~~~g-~~p~~~~~~~--ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 351 (572)
+.+......... ...+...|.+ ++....|++++|...+++....+ |+...|..+...+...|+.++|.+.+++..
T Consensus 403 a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 403 LSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAF 480 (517)
T ss_pred HHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444433321 2233444544 34446699999999999999865 688899999999999999999999999998
Q ss_pred HHHHhCCCCCCHHHH
Q 008265 352 HLEAKGVLKLDVFTY 366 (572)
Q Consensus 352 ~~~~~~~~~~~~~~~ 366 (572)
. +.|...+|
T Consensus 481 ~------L~P~~pt~ 489 (517)
T PRK10153 481 N------LRPGENTL 489 (517)
T ss_pred h------cCCCCchH
Confidence 7 45554444
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.075 Score=45.51 Aligned_cols=86 Identities=15% Similarity=0.141 Sum_probs=67.3
Q ss_pred CHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCc--hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 008265 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN--TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439 (572)
Q Consensus 362 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 439 (572)
....+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+..+.. +-+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 344677788888999999999999999987643332 3578889999999999999999999998753 2345666677
Q ss_pred HHHHHHhCC
Q 008265 440 LQACVEACQ 448 (572)
Q Consensus 440 i~~~~~~g~ 448 (572)
..++...|+
T Consensus 113 g~~~~~~g~ 121 (172)
T PRK02603 113 AVIYHKRGE 121 (172)
T ss_pred HHHHHHcCC
Confidence 777777666
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.014 Score=40.45 Aligned_cols=54 Identities=19% Similarity=0.242 Sum_probs=23.8
Q ss_pred HHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008265 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426 (572)
Q Consensus 372 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 426 (572)
.+.+.|++++|++.|+++.+.... +...+..+..++...|++++|...|+++.+
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444444444444444211 334444444444444444444444444443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.017 Score=40.02 Aligned_cols=58 Identities=19% Similarity=0.156 Sum_probs=45.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008265 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (572)
Q Consensus 227 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 285 (572)
+...+.+.|++++|.+.|+.+.+... -+...+..+..++...|++++|...|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDP-DNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCST-THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45677888899999999998888652 26678888888888999999999999888765
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.2 Score=39.46 Aligned_cols=86 Identities=19% Similarity=0.164 Sum_probs=45.4
Q ss_pred HHHHccccHHHHHHHHHHHHHCCCCCc--hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHH
Q 008265 371 KVFADAKWWQMALKVKEDMLSAGVTPN--TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN----SQCCNILLQACV 444 (572)
Q Consensus 371 ~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~ 444 (572)
.++-..|+.++|+.+|++....|.... ...+-.+.+.+...|++++|..+|++.... .|+ ......+..++.
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHH
Confidence 344556666666666666666655433 223444555566666666666666666543 122 111112223455
Q ss_pred HhCCHhHHHHHHHH
Q 008265 445 EACQFDRAFRLFRS 458 (572)
Q Consensus 445 ~~g~~~~A~~~~~~ 458 (572)
..|+.++|.+.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 56666666665543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.1 Score=44.47 Aligned_cols=96 Identities=16% Similarity=0.103 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCC--chhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008265 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP--NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440 (572)
Q Consensus 363 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 440 (572)
...|..+...+...|++++|+..|++.......+ ...+|..+...+...|+.++|...++...... +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4567777888888999999999999998663332 23578889999999999999999999988752 33345566666
Q ss_pred HHHH-------HhCCHhHHHHHHHHh
Q 008265 441 QACV-------EACQFDRAFRLFRSW 459 (572)
Q Consensus 441 ~~~~-------~~g~~~~A~~~~~~m 459 (572)
..+. +.|+++.|...+++-
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 6666 788888777766654
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.064 Score=48.48 Aligned_cols=82 Identities=12% Similarity=0.093 Sum_probs=38.5
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccccHHH
Q 008265 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTIVKVFADAKWWQM 381 (572)
Q Consensus 303 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~ 381 (572)
+++++|+..|.+.++.... |.+-|..-..+|++.|.++.|++-.+.... +.|. ..+|..|-.+|...|++++
T Consensus 95 ~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~------iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 95 KDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALS------IDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred hhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHh------cChHHHHHHHHHHHHHHccCcHHH
Confidence 3455555555555543322 344444444555555555555544444443 2222 2245555555555555555
Q ss_pred HHHHHHHHHH
Q 008265 382 ALKVKEDMLS 391 (572)
Q Consensus 382 a~~~~~~m~~ 391 (572)
|++.|++..+
T Consensus 168 A~~aykKaLe 177 (304)
T KOG0553|consen 168 AIEAYKKALE 177 (304)
T ss_pred HHHHHHhhhc
Confidence 5555554444
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.077 Score=48.62 Aligned_cols=92 Identities=9% Similarity=-0.031 Sum_probs=40.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCc----h
Q 008265 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV----FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN----T 398 (572)
Q Consensus 327 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~ 398 (572)
|...+..+.+.|++++|...|+.+.+ ..|+. ..+-.+..+|...|++++|...|+.+.+. .|+ .
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~------~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~ 217 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVK------KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAA 217 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH------HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchh
Confidence 43433333444555555555555544 12322 23444444455555555555555555443 121 1
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008265 399 ITWSSLINACANAGLVEQAMHLFEEMLQ 426 (572)
Q Consensus 399 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 426 (572)
..+-.+...+...|+.++|..+|+.+.+
T Consensus 218 dAl~klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 218 DAMFKVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2222233344444555555555554444
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.05 Score=43.32 Aligned_cols=98 Identities=13% Similarity=0.047 Sum_probs=56.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHH
Q 008265 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (572)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 402 (572)
|..++..+|.++++.|+.+....+.+..=.....|....+. --......|+..+..
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~------------------------~~~~spl~Pt~~lL~ 56 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGD------------------------YPPSSPLYPTSRLLI 56 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCc------------------------cCCCCCCCCCHHHHH
Confidence 34567777777777777777777665543211111000000 112234566777777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHH
Q 008265 403 SLINACANAGLVEQAMHLFEEMLQ-AGCEPNSQCCNILLQACV 444 (572)
Q Consensus 403 ~li~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~ 444 (572)
+++.+|+..|++..|.++.+...+ .+++.+..+|..|+.=+.
T Consensus 57 AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 57 AIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 777777777777777777776653 456666667776666443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.41 Score=37.76 Aligned_cols=22 Identities=18% Similarity=-0.008 Sum_probs=10.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHH
Q 008265 330 LLKACCLAGNTVLAQEIYGEVK 351 (572)
Q Consensus 330 ll~~~~~~g~~~~a~~~~~~~~ 351 (572)
+...+...|++++|..++++..
T Consensus 44 lastlr~LG~~deA~~~L~~~~ 65 (120)
T PF12688_consen 44 LASTLRNLGRYDEALALLEEAL 65 (120)
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444455555555554444
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.086 Score=48.31 Aligned_cols=99 Identities=10% Similarity=0.044 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCch----hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHH
Q 008265 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT----ITWSSLINACANAGLVEQAMHLFEEMLQAGC--EPNSQCCN 437 (572)
Q Consensus 364 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~ 437 (572)
..|...+..+.+.|++++|...|+.+.+. .|+. ..+..+...|...|++++|...|+.+.+.-- ......+-
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34555555556668888888888888876 4443 4566778888888888888888888876410 11234444
Q ss_pred HHHHHHHHhCCHhHHHHHHHHhhhccc
Q 008265 438 ILLQACVEACQFDRAFRLFRSWTLSKT 464 (572)
Q Consensus 438 ~li~~~~~~g~~~~A~~~~~~m~~~~~ 464 (572)
.+...+...|+.++|.++|+++.+..+
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 556667788888888888888776543
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.016 Score=41.92 Aligned_cols=70 Identities=13% Similarity=0.006 Sum_probs=54.3
Q ss_pred hhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhh
Q 008265 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNE 141 (572)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~ 141 (572)
..+|+.+...+...|++++|+..|++..+. .............++..+...+...|++++|+..+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 678899999999999999999999998865 2111112223466788889999999999999999988654
|
... |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.25 E-value=1 Score=42.03 Aligned_cols=59 Identities=10% Similarity=-0.017 Sum_probs=37.9
Q ss_pred hhcCChhHHHHHHHHHHhhc--CChhHHHhHHHHHHHhhhhHhhhhhC-ChhHHHHHHHHhhhc
Q 008265 82 AKDGRLEEFAMIVESVVVSE--GNVSKFASMLSLEMVASGIVKSIREG-RIDCVVGVLKKLNEL 142 (572)
Q Consensus 82 ~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~m~~~ 142 (572)
.+.|+.+.|..++.+..... ..|+.. ..+ ...+..+.......+ +++.|...+++..+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~-~~L-a~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~ 65 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMA-EEL-ARVCYNIGKSLLSKKDKYEEAVKWLQRAYDI 65 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHH-HHH-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 46799999999999887653 244332 233 334444445555666 888888887765543
|
It is also involved in sporulation []. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.025 Score=39.67 Aligned_cols=60 Identities=20% Similarity=0.269 Sum_probs=28.8
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC-CHhHHHHHHHHh
Q 008265 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC-QFDRAFRLFRSW 459 (572)
Q Consensus 399 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m 459 (572)
..|..+...+...|++++|+..|++..+.. +-+...|..+..++.+.| ++++|.+.+++.
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 344444445555555555555555554442 223344444444555555 355555555443
|
... |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.069 Score=48.28 Aligned_cols=101 Identities=18% Similarity=0.180 Sum_probs=78.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHc
Q 008265 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411 (572)
Q Consensus 332 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 411 (572)
+-..+.+++.+|+..|.+..++ .+-|.+-|..-..+|.+.|.++.|++-.+........ -..+|..|-.+|...
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l-----~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIEL-----DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhc-----CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHcc
Confidence 4578888999999999999874 2456667788888899999999998888887765221 346788899999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008265 412 GLVEQAMHLFEEMLQAGCEPNSQCCNILL 440 (572)
Q Consensus 412 g~~~~a~~~~~~m~~~~~~p~~~~~~~li 440 (572)
|++++|.+.|++.++. .|+-.+|..=+
T Consensus 163 gk~~~A~~aykKaLel--dP~Ne~~K~nL 189 (304)
T KOG0553|consen 163 GKYEEAIEAYKKALEL--DPDNESYKSNL 189 (304)
T ss_pred CcHHHHHHHHHhhhcc--CCCcHHHHHHH
Confidence 9999999998888764 77777664433
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.23 E-value=1 Score=41.98 Aligned_cols=177 Identities=11% Similarity=0.013 Sum_probs=105.4
Q ss_pred hhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHhC----C-CCCcccchHHH
Q 008265 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSG-EVEMFVGLMEVLEEF----R-LPVKELDEEFR 196 (572)
Q Consensus 123 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g-~~~~a~~~~~~~~~~----~-~~~~~~~~~~~ 196 (572)
..+.|+++.|..++.+........++.....+-.++......+.+.+ +++.|...+++..+. + ..... ..+.
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~-~~~~- 80 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLS-PDGS- 80 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccC-CcHH-
Confidence 45889999999999988776312222223344445555555556667 888888777765432 0 00000 0000
Q ss_pred HHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHH---HHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHH
Q 008265 197 IVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVS---ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM 273 (572)
Q Consensus 197 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 273 (572)
-++ -.++..++.+|...+..+. |..+++.+...... ...++-.-++.+.+.++.+
T Consensus 81 -------------elr--------~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~ 138 (278)
T PF08631_consen 81 -------------ELR--------LSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEE 138 (278)
T ss_pred -------------HHH--------HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChh
Confidence 000 1567778888888887654 55566666444222 2445556677777799999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHh---c-CChHHHHHHHHHHHHcCCCCCH
Q 008265 274 KSRAIYEDLRSQNVTLNIYVFNSLMNVN---A-HDLKFTLEVYKNMQKLGVMADM 324 (572)
Q Consensus 274 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~---~-~~~~~a~~~~~~m~~~~~~~~~ 324 (572)
++.+.+.+|...- .-....+..++... . .....+...++.+....+.|..
T Consensus 139 ~~~~~L~~mi~~~-~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 139 EYEEILMRMIRSV-DHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHHHHhc-ccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 9999999999762 11334455554443 2 4566777777777655555554
|
It is also involved in sporulation []. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.6 Score=39.19 Aligned_cols=132 Identities=14% Similarity=0.116 Sum_probs=101.5
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCC---CCC
Q 008265 320 VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG---VTP 396 (572)
Q Consensus 320 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~p 396 (572)
+.|+...--.|..+..+.|+..+|...|.+.. .|...-|......+..+....+++..|...++++-+.. -.|
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qal----sG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p 160 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQAL----SGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP 160 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHh----ccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC
Confidence 45677777788899999999999999999987 57677788888899999999999999999999988763 233
Q ss_pred chhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHh
Q 008265 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (572)
Q Consensus 397 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (572)
| +.-.+.+.|...|...+|+.-|+..... -|+...-...-..+.+.|+.+++..-+..+
T Consensus 161 d--~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 161 D--GHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred C--chHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 3 3455678889999999999999999876 455544444444566788777666554443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.046 Score=38.31 Aligned_cols=63 Identities=14% Similarity=0.118 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccc-cHHHHHHHHHHHHH
Q 008265 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK-WWQMALKVKEDMLS 391 (572)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~ 391 (572)
...|..+...+...|++++|+..|.+..+.. +.+...|..+..+|.+.| ++++|++.+++..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-----p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-----PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-----TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3455555556666666666666666665531 223445555556666666 56666666655543
|
... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.42 Score=43.55 Aligned_cols=111 Identities=16% Similarity=0.098 Sum_probs=84.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc---ccHHHHHHHHHHHHHCCCCCchh
Q 008265 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA---KWWQMALKVKEDMLSAGVTPNTI 399 (572)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~g~~p~~~ 399 (572)
|...|-.|...|...|+.+.|...|.+..++ . .++...+..+..++... ..-.++.++|+++...... |..
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~---g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~ir 228 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRL--A---GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIR 228 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHh--C---CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHH
Confidence 7889999999999999999999999999885 2 34555666666655432 2356889999999887433 566
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008265 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441 (572)
Q Consensus 400 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 441 (572)
....|...+...|++.+|...|+.|.+.. |....+..+|.
T Consensus 229 al~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie 268 (287)
T COG4235 229 ALSLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence 67778888999999999999999999863 33344545544
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.23 Score=39.56 Aligned_cols=100 Identities=11% Similarity=0.057 Sum_probs=73.2
Q ss_pred CHHHHHHHHHHHHHhCCHhHHHHHHHHhhhcccccccccccCCchHHHHhhhhhccccccCCCCcccCCccchhhhhcCC
Q 008265 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSF 511 (572)
Q Consensus 432 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (572)
|..++..+|.++++.|+++....+++....-+........ .+-...+.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~--------------------------------~~~~~spl 48 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEG--------------------------------DYPPSSPL 48 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccC--------------------------------ccCCCCCC
Confidence 5678899999999999999999998876532211000000 01234457
Q ss_pred CCCHHHHHHHHHHHhh--cHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHccCC
Q 008265 512 KPTTTTYNILMKACCT--DYYRVKALMNEMRTV-GLSPNHISWTILIDACGGSGN 563 (572)
Q Consensus 512 ~p~~~~~~~ll~a~~~--~~~~a~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~ 563 (572)
.|+..+..+++.+|+. +...|.++.+...+. +++-+..+|..|+.-+...-+
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 8999999999999986 567999999988765 888889999999966655444
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=95.91 E-value=1.3 Score=40.27 Aligned_cols=56 Identities=11% Similarity=0.097 Sum_probs=31.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHh
Q 008265 404 LINACANAGLVEQAMHLFEEMLQA--GCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (572)
Q Consensus 404 li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (572)
+..-|.+.|.+..|..-++.+.+. +.+........++.+|.+.|..++|..+...+
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 344456666666666666666543 22223444555666666666666666655443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.45 Score=45.64 Aligned_cols=50 Identities=10% Similarity=0.150 Sum_probs=41.9
Q ss_pred CccccccchhhhcccCCchhhhHHHHHHHhHhhcCChhHHHHHHHHHHhhc
Q 008265 51 TVHSSQTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSE 101 (572)
Q Consensus 51 ~~~~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 101 (572)
.++.-.+.+.+.++.+|+. +.+|-.|++-+...|..++..+++++|...-
T Consensus 23 ~i~~D~lrLRerIkdNPtn-I~S~fqLiq~~~tq~s~~~~re~yeq~~~pf 72 (660)
T COG5107 23 NIHGDELRLRERIKDNPTN-ILSYFQLIQYLETQESMDAEREMYEQLSSPF 72 (660)
T ss_pred CCCchHHHHHHHhhcCchh-HHHHHHHHHHHhhhhhHHHHHHHHHHhcCCC
Confidence 3444455778888888887 9999999999999999999999999998653
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.81 E-value=1.2 Score=39.22 Aligned_cols=171 Identities=15% Similarity=0.105 Sum_probs=85.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCC--CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHh
Q 008265 226 NFVREFGKKRDLVSALRAYDASKKHLSS--PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI--YVFNSLMNVN 301 (572)
Q Consensus 226 ~li~~~~~~g~~~~a~~~~~~m~~~~~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~ 301 (572)
.....+.+.|++++|.+.|+.+...... --....-.+..++.+.|+++.|...++++.+. -|+. .-+...+.+.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHH
Confidence 3455566778899999999888765321 22345566778888889999999999888765 2221 1222222221
Q ss_pred cCChHHHHHHHHHHHHc-CCCCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008265 302 AHDLKFTLEVYKNMQKL-GVMAD-------MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVF 373 (572)
Q Consensus 302 ~~~~~~a~~~~~~m~~~-~~~~~-------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 373 (572)
+ .+...... ....| ...+..++.-|=...-..+|...+..+.... - ..--.+..-|
T Consensus 88 ~--------~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~l-------a-~~e~~ia~~Y 151 (203)
T PF13525_consen 88 S--------YYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRL-------A-EHELYIARFY 151 (203)
T ss_dssp H--------HHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHH-------H-HHHHHHHHHH
T ss_pred H--------HHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHH-------H-HHHHHHHHHH
Confidence 1 01110000 00001 1123344444444445555555554444311 0 1111244556
Q ss_pred HccccHHHHHHHHHHHHHCCCCCchh----hHHHHHHHHHHcCCHHH
Q 008265 374 ADAKWWQMALKVKEDMLSAGVTPNTI----TWSSLINACANAGLVEQ 416 (572)
Q Consensus 374 ~~~g~~~~a~~~~~~m~~~g~~p~~~----~~~~li~~~~~~g~~~~ 416 (572)
.+.|.+..|..-++.+.+. -|+.. ..-.++.+|.+.|..+.
T Consensus 152 ~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~ 196 (203)
T PF13525_consen 152 YKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQA 196 (203)
T ss_dssp HCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHH
Confidence 6777777777777776665 33332 34556666666666553
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.81 E-value=1.8 Score=41.19 Aligned_cols=56 Identities=5% Similarity=-0.128 Sum_probs=45.0
Q ss_pred HHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHH
Q 008265 78 ASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLK 137 (572)
Q Consensus 78 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 137 (572)
-.-+++.|+...-+.+|+..++.|-+--. ....+|..+-.+|.-.+++++|+++..
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~----tLSAIYsQLGNAyfyL~DY~kAl~yH~ 79 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLS----TLSAIYSQLGNAYFYLKDYEKALKYHT 79 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHH----HHHHHHHHhcchhhhHhhHHHHHhhhh
Confidence 45689999999999999999998866321 225667888888999999999998764
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.75 E-value=1.6 Score=44.02 Aligned_cols=74 Identities=19% Similarity=0.194 Sum_probs=45.4
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHH-H----------HHHHHH
Q 008265 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT-Y----------STIVKV 372 (572)
Q Consensus 304 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-~----------~~li~~ 372 (572)
.+..|-++|.+|-. ...+++.....++|.+|..+-+...+ +.||++. | .-.-.+
T Consensus 762 ~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe------~~~dVy~pyaqwLAE~DrFeEAqkA 826 (1081)
T KOG1538|consen 762 SPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPE------FKDDVYMPYAQWLAENDRFEEAQKA 826 (1081)
T ss_pred ccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCcc------ccccccchHHHHhhhhhhHHHHHHH
Confidence 45566677766643 23456777778888888877776655 4455432 1 122345
Q ss_pred HHccccHHHHHHHHHHHHHC
Q 008265 373 FADAKWWQMALKVKEDMLSA 392 (572)
Q Consensus 373 ~~~~g~~~~a~~~~~~m~~~ 392 (572)
|.+.|+-.+|.++++++...
T Consensus 827 fhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 827 FHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHHhcchHHHHHHHHHhhhh
Confidence 66667777777777776543
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.88 Score=45.94 Aligned_cols=174 Identities=11% Similarity=0.024 Sum_probs=100.3
Q ss_pred hHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhh----hCChhHHHHHHHHhhhcCCCCc
Q 008265 72 DYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIR----EGRIDCVVGVLKKLNELGVAPL 147 (572)
Q Consensus 72 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~m~~~~~~p~ 147 (572)
.....+++.+.=.|+-+.+++++....+.+---.....+. .=.|..++..++. ....+.|.++++.+.+. .|+
T Consensus 189 p~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~-LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~ 265 (468)
T PF10300_consen 189 PKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALV-LLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPN 265 (468)
T ss_pred HHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHH-HHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCC
Confidence 3567777888888999999999988765422112222222 2233333333333 45667889999988886 676
Q ss_pred chhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHH
Q 008265 148 ELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNF 227 (572)
Q Consensus 148 ~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~l 227 (572)
.. .+...-.-+ ....|++++|++.|+...... ..|..+- ...+--+
T Consensus 266 s~----lfl~~~gR~--~~~~g~~~~Ai~~~~~a~~~q------~~~~Ql~----------------------~l~~~El 311 (468)
T PF10300_consen 266 SA----LFLFFEGRL--ERLKGNLEEAIESFERAIESQ------SEWKQLH----------------------HLCYFEL 311 (468)
T ss_pred cH----HHHHHHHHH--HHHhcCHHHHHHHHHHhccch------hhHHhHH----------------------HHHHHHH
Confidence 54 332222222 233788999999888654211 1111110 1344556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHH-HHHHhcCCH-------HHHHHHHHHHH
Q 008265 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTII-DVCGICGDY-------MKSRAIYEDLR 283 (572)
Q Consensus 228 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll-~~~~~~g~~-------~~a~~~~~~m~ 283 (572)
.-.+.-.++|++|.+.|..+.+..-. +...|.-+. .++...|+. ++|.++|.+..
T Consensus 312 ~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 312 AWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 66777788999999999888775221 222333322 233445666 66666666654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.70 E-value=2.2 Score=41.31 Aligned_cols=193 Identities=14% Similarity=0.143 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-------HHHhcC------ChHHHHHHHHHHHHcCCCCC
Q 008265 257 YICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL-------MNVNAH------DLKFTLEVYKNMQKLGVMAD 323 (572)
Q Consensus 257 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l-------l~~~~~------~~~~a~~~~~~m~~~~~~~~ 323 (572)
.++..++....+.++...|.+.+.-+.-- .|+...-.-+ -...++ +...-+.++.......+..-
T Consensus 299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrq 376 (549)
T PF07079_consen 299 DRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQ 376 (549)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHH
Confidence 45666666677777777776666655543 3333221111 111221 23334555555555443311
Q ss_pred HHHHHHHH---HHHHHcCC-hHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH----HHH---ccccHHHHHHHHHHHHHC
Q 008265 324 MASYNILL---KACCLAGN-TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK----VFA---DAKWWQMALKVKEDMLSA 392 (572)
Q Consensus 324 ~~~~~~ll---~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~----~~~---~~g~~~~a~~~~~~m~~~ 392 (572)
....-++ .-+-+.|. -++|.++++.+.+. ..-|...-|.+.. +|. ....+.+-+.+-+-+.+.
T Consensus 377 -QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~f-----t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~ 450 (549)
T PF07079_consen 377 -QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQF-----TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEV 450 (549)
T ss_pred -HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh-----ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 1122222 23444555 78899999998873 2334444333322 222 234566667777777888
Q ss_pred CCCCchhh----HHHHHHH--HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHh
Q 008265 393 GVTPNTIT----WSSLINA--CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (572)
Q Consensus 393 g~~p~~~~----~~~li~~--~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (572)
|+.|-.+. -|.|.+| +...|++.++.-.-..+.+ +.|+..+|..+.-+.....++++|+.++.++
T Consensus 451 gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 451 GLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred CCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 98875544 3333332 4567899988877776665 5899999999999999999999999999875
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.64 E-value=2.8 Score=42.43 Aligned_cols=200 Identities=13% Similarity=0.148 Sum_probs=115.6
Q ss_pred HHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 008265 174 FVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSS 253 (572)
Q Consensus 174 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 253 (572)
.+.-++++.+.|-.|++. .+...|+-.|.+.+|.++|.+-... +..+..|...+.++.|.+++..-
T Consensus 619 li~EL~~~k~rge~P~~i----LlA~~~Ay~gKF~EAAklFk~~G~e----nRAlEmyTDlRMFD~aQE~~~~g------ 684 (1081)
T KOG1538|consen 619 LISELEERKKRGETPNDL----LLADVFAYQGKFHEAAKLFKRSGHE----NRALEMYTDLRMFDYAQEFLGSG------ 684 (1081)
T ss_pred HHHHHHHHHhcCCCchHH----HHHHHHHhhhhHHHHHHHHHHcCch----hhHHHHHHHHHHHHHHHHHhhcC------
Confidence 334456777777666542 3567788889999998888654322 33455555555555555544321
Q ss_pred CcHHHHHHHHH-----------------HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008265 254 PNMYICRTIID-----------------VCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQ 316 (572)
Q Consensus 254 ~~~~~~~~ll~-----------------~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~a~~~~~~m~ 316 (572)
+...-..+++ .+...|+.++|..+. +-.|-.+.+.++-.++.
T Consensus 685 -~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~--------------------~d~gW~d~lidI~rkld 743 (1081)
T KOG1538|consen 685 -DPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEIC--------------------GDHGWVDMLIDIARKLD 743 (1081)
T ss_pred -ChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhh--------------------hcccHHHHHHHHHhhcc
Confidence 1111122221 122223333322221 11122233333333332
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCC
Q 008265 317 KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396 (572)
Q Consensus 317 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 396 (572)
. .+..+...+..-+.+...+..|.++|..|-.+ ..++......++|++|..+-+...+. .|
T Consensus 744 ~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~-------------ksiVqlHve~~~W~eAFalAe~hPe~--~~ 804 (1081)
T KOG1538|consen 744 K----AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL-------------KSLVQLHVETQRWDEAFALAEKHPEF--KD 804 (1081)
T ss_pred h----hhhhHHHHHHHHHhhccccchHHHHHHHhccH-------------HHHhhheeecccchHhHhhhhhCccc--cc
Confidence 2 24445555555566677788899999887642 24567788899999999998887664 45
Q ss_pred chhh-----------HHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 397 NTIT-----------WSSLINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 397 ~~~~-----------~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
|+.. |.-.=.+|.+.|+-.+|.++++++...
T Consensus 805 dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 805 DVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred cccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 5432 344556788999999999999998654
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.44 Score=47.32 Aligned_cols=159 Identities=9% Similarity=0.082 Sum_probs=97.6
Q ss_pred HhHhhcCChhHHHHHHH-HHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHH
Q 008265 79 SKLAKDGRLEEFAMIVE-SVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKL 157 (572)
Q Consensus 79 ~~~~~~g~~~~A~~~~~-~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~ 157 (572)
....-+++++++.++.+ .-.-..++ ......++.-+-+.|..+.|+.+-.+-.. -|++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~---------~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeL 327 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIP---------KDQGQSIARFLEKKGYPELALQFVTDPDH------------RFEL 327 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG-----------HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHH
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCC---------hhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHH
Confidence 34445788888766664 11111122 22344556667788888888888765322 4555
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCH
Q 008265 158 LKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDL 237 (572)
Q Consensus 158 l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~ 237 (572)
.+. .|+++.|.++.++ .++...|..|.+...+.|+++-|++.|.+.. -+..|+-.|.-.|+.
T Consensus 328 Al~-------lg~L~~A~~~a~~-------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~----d~~~L~lLy~~~g~~ 389 (443)
T PF04053_consen 328 ALQ-------LGNLDIALEIAKE-------LDDPEKWKQLGDEALRQGNIELAEECYQKAK----DFSGLLLLYSSTGDR 389 (443)
T ss_dssp HHH-------CT-HHHHHHHCCC-------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-----HHHHHHHHHHCT-H
T ss_pred HHh-------cCCHHHHHHHHHh-------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc----CccccHHHHHHhCCH
Confidence 544 7999999887653 2345678899999999999999988887764 466777778888888
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008265 238 VSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282 (572)
Q Consensus 238 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m 282 (572)
+.-.++-+....+| -+|....++.-.|+.++..+++.+-
T Consensus 390 ~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 390 EKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 87777777666553 2455566666678888877776554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.11 Score=36.85 Aligned_cols=57 Identities=11% Similarity=-0.007 Sum_probs=46.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008265 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (572)
Q Consensus 228 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 285 (572)
-..|.+.+++++|.++++.+.+.++. +...|...-.++.+.|++++|.+.|+...+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35678889999999999988886433 5667777888889999999999999988876
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.11 Score=37.34 Aligned_cols=66 Identities=20% Similarity=0.195 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh-CCCCCC-HHHHHHHHHHHHccccHHHHHHHHHHHH
Q 008265 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAK-GVLKLD-VFTYSTIVKVFADAKWWQMALKVKEDML 390 (572)
Q Consensus 325 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 390 (572)
.+++.+...|...|++++|+..|++..+..+. |.-.|+ ..++..+...|...|++++|++.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45667777777888888888888777765321 211122 3456666777777777777777777654
|
... |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.29 Score=43.84 Aligned_cols=51 Identities=14% Similarity=0.120 Sum_probs=34.8
Q ss_pred CchhhHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 008265 396 PNTITWSSLINACAN-----AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446 (572)
Q Consensus 396 p~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 446 (572)
.|..+|-..+..+.. .+.++-....++.|.+.|+.-|..+|+.|+..+=+.
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKg 120 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKG 120 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccc
Confidence 355556666655543 245666677778888888888888888888776443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.46 E-value=1.6 Score=41.67 Aligned_cols=248 Identities=12% Similarity=0.027 Sum_probs=130.1
Q ss_pred hhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcC----CCchhHHHHHHHHHHhcCCHHHHHHH
Q 008265 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRA 243 (572)
Q Consensus 168 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~ 243 (572)
..++..|+..+....+. -|++...|..-...+...|+++.|.--.+.- +.........-.++...++..+|.+.
T Consensus 62 ~k~Y~nal~~yt~Ai~~--~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~ 139 (486)
T KOG0550|consen 62 QKTYGNALKNYTFAIDM--CPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEK 139 (486)
T ss_pred HhhHHHHHHHHHHHHHh--CccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHH
Confidence 45566666666555543 3555566666666666666666654433221 11111122222233333333333332
Q ss_pred HH---------------HHHhcC-CCCcHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH----hc
Q 008265 244 YD---------------ASKKHL-SSPNMYICRTI-IDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV----NA 302 (572)
Q Consensus 244 ~~---------------~m~~~~-~~~~~~~~~~l-l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~----~~ 302 (572)
++ ...... -+|....|..+ ..++.-.|++++|.+.-....+.. ....+..++++ |.
T Consensus 140 ~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~ 216 (486)
T KOG0550|consen 140 LKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYN 216 (486)
T ss_pred hhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccc
Confidence 22 111111 11333333332 234556688888888777766542 23445555665 33
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHH---HHHHHH----------HHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008265 303 HDLKFTLEVYKNMQKLGVMADMASYN---ILLKAC----------CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369 (572)
Q Consensus 303 ~~~~~a~~~~~~m~~~~~~~~~~~~~---~ll~~~----------~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 369 (572)
.+.+.+...|++.+..+ |+...-. .....| .+.|++.+|.+.|.+........ ..++...|...
T Consensus 217 ~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n-~~~naklY~nr 293 (486)
T KOG0550|consen 217 DNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN-KKTNAKLYGNR 293 (486)
T ss_pred cchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc-cchhHHHHHHh
Confidence 67788888888777643 3433222 222222 35667777777777777755443 55666667666
Q ss_pred HHHHHccccHHHHHHHHHHHHHCCCCCchhh-HHHH--HHHHHHcCCHHHHHHHHHHHHHc
Q 008265 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTIT-WSSL--INACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 370 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~-~~~l--i~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
.....+.|+..+|+.--++..+. |... ...+ ..++.-.++|++|++-++...+.
T Consensus 294 a~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 294 ALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 67777777777777777766643 3322 2222 22344456677777777666554
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.3 Score=43.78 Aligned_cols=114 Identities=15% Similarity=0.115 Sum_probs=77.1
Q ss_pred hHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008265 222 ILFCNFVREFGK-----KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS 296 (572)
Q Consensus 222 ~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 296 (572)
.+|-+.+..+.. .+.++-....+..|.+.|+..|..+|+.||+.+-+-. +.|. ..+..
T Consensus 68 ~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~-nvfQ~ 130 (406)
T KOG3941|consen 68 DSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQ-NVFQK 130 (406)
T ss_pred HHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccH-HHHHH
Confidence 556666655543 3667777777888888888888888888887643322 2222 23333
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHH
Q 008265 297 LMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT-VLAQEIYGEVKH 352 (572)
Q Consensus 297 ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~ 352 (572)
+.-.|-+.-+-+..++++|...|+.||..+-..+++++.+.+-. .+..++.-.|.+
T Consensus 131 ~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 131 VFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 33345556677889999999999999999999999999877653 334444444444
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.65 Score=42.38 Aligned_cols=98 Identities=8% Similarity=-0.078 Sum_probs=65.2
Q ss_pred CCcccchHHHHHHHHhcCCChHHHHHhhhc----CCCchhHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCCCcHHHH
Q 008265 187 PVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKK---RDLVSALRAYDASKKHLSSPNMYIC 259 (572)
Q Consensus 187 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~----~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~~~~~~~~~~ 259 (572)
.|.+...|..|..+|...|+.+.|...|.. .+++...+..+..++..+ .+-.++..+|+++.+.. +-|+...
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 577777788888888888888877776654 355555555555444433 33567777777776643 2245566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008265 260 RTIIDVCGICGDYMKSRAIYEDLRSQ 285 (572)
Q Consensus 260 ~~ll~~~~~~g~~~~a~~~~~~m~~~ 285 (572)
..+-..+...|++.+|...++.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 66666777778888888888777766
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.16 Score=36.01 Aligned_cols=55 Identities=15% Similarity=0.002 Sum_probs=25.5
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHC
Q 008265 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (572)
Q Consensus 333 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 392 (572)
.|.+.+++++|.++++.+... .+.+...|.....++.+.|++++|.+.|+...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~-----~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALEL-----DPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHh-----CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 344455555555555555442 1223334444444455555555555555554443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.56 Score=45.66 Aligned_cols=65 Identities=12% Similarity=-0.068 Sum_probs=56.5
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHccccHHHHHHHHHHHHHC
Q 008265 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV----FTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (572)
Q Consensus 322 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 392 (572)
.+...++.+..+|.+.|++++|+..|++..+ +.|+. .+|..+..+|...|+.++|++.+++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALe------L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALE------LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567889999999999999999999999887 46664 35899999999999999999999998875
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.17 E-value=3.1 Score=39.77 Aligned_cols=153 Identities=9% Similarity=-0.043 Sum_probs=105.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH---H--
Q 008265 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDV--CGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN---V-- 300 (572)
Q Consensus 228 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~--~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~---~-- 300 (572)
...+.-.|++++|.++-..+.+.. ....+...+++ +--.++.+.+...|++-... .|+...-...-. .
T Consensus 176 a~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 176 AECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHH
Confidence 355667799999999887776642 22344444443 34457789999999988866 466544332211 1
Q ss_pred ----------hcCChHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHH
Q 008265 301 ----------NAHDLKFTLEVYKNMQKL---GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367 (572)
Q Consensus 301 ----------~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 367 (572)
..|++..|.+.|.+.+.. +++++...|........+.|+.++|+.--++...+ .+ .++..
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i------D~-syika 323 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI------DS-SYIKA 323 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc------CH-HHHHH
Confidence 126789999999988764 45667777888888889999999999999988762 22 22333
Q ss_pred HH--HHHHHccccHHHHHHHHHHHHHC
Q 008265 368 TI--VKVFADAKWWQMALKVKEDMLSA 392 (572)
Q Consensus 368 ~l--i~~~~~~g~~~~a~~~~~~m~~~ 392 (572)
.+ ..++...++|++|.+-++...+.
T Consensus 324 ll~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 324 LLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33 34555678899999999887765
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.15 E-value=2.3 Score=38.05 Aligned_cols=59 Identities=10% Similarity=0.127 Sum_probs=27.4
Q ss_pred HHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008265 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425 (572)
Q Consensus 367 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 425 (572)
+.++......|.+.-.+.++.+..+...+-+......|.+.-.+.|+.+.|..+|+...
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~ve 239 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVE 239 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 33444444444444444445544444333344444444444444555555555555443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.88 Score=37.71 Aligned_cols=88 Identities=10% Similarity=-0.105 Sum_probs=67.9
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcC
Q 008265 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412 (572)
Q Consensus 333 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 412 (572)
-+...|++++|..+|.-+.... .-+..-|..|..++-..+++++|+..|......+.. |...+-....+|...|
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d-----~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD-----FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-----cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhC
Confidence 4457899999999998887632 234555677777777889999999999887766543 5566667788899999
Q ss_pred CHHHHHHHHHHHHH
Q 008265 413 LVEQAMHLFEEMLQ 426 (572)
Q Consensus 413 ~~~~a~~~~~~m~~ 426 (572)
+.+.|...|....+
T Consensus 120 ~~~~A~~~f~~a~~ 133 (165)
T PRK15331 120 KAAKARQCFELVNE 133 (165)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999988876
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.97 E-value=2.6 Score=37.77 Aligned_cols=186 Identities=11% Similarity=0.032 Sum_probs=110.6
Q ss_pred hHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhc-CCCCcchh
Q 008265 72 DYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL-GVAPLELF 150 (572)
Q Consensus 72 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~ 150 (572)
..|+.- ..-.+.|++++|...|+.+....+- +.....+...++-++-+.+++++|+...++..+. +-+||.
T Consensus 36 ~LY~~g-~~~L~~gn~~~A~~~fe~l~~~~p~-----s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-- 107 (254)
T COG4105 36 ELYNEG-LTELQKGNYEEAIKYFEALDSRHPF-----SPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-- 107 (254)
T ss_pred HHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCC-----CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh--
Confidence 444444 4566789999999999999977543 1123666777888899999999999999888776 334443
Q ss_pred hhhhhHHHHHHHHHHh-------hhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCch-h
Q 008265 151 DGSGFKLLKNECQRLL-------DSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRAD-I 222 (572)
Q Consensus 151 ~~~~~~~l~~~~~~~~-------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~ 222 (572)
-|-.++++.+.+. +......|..-|+++.+.- |++.. ...|..-...+...- .
T Consensus 108 ---dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry--PnS~Y--------------a~dA~~~i~~~~d~LA~ 168 (254)
T COG4105 108 ---DYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY--PNSRY--------------APDAKARIVKLNDALAG 168 (254)
T ss_pred ---hHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC--CCCcc--------------hhhHHHHHHHHHHHHHH
Confidence 5566666555431 1222333334444443321 22211 111111110000000 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008265 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSP---NMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (572)
Q Consensus 223 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 285 (572)
.=-.+.+.|.+.|.+..|..-+++|.+. .+- ....+-.+..+|...|-.++|.+.-.-+...
T Consensus 169 ~Em~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 169 HEMAIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 1123677888888888888888888776 221 2235566677788888888777776666544
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.96 E-value=3.5 Score=39.19 Aligned_cols=120 Identities=13% Similarity=0.005 Sum_probs=56.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCh
Q 008265 263 IDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKL-GVMA-DMASYNILLKACCLAGNT 340 (572)
Q Consensus 263 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~a~~~~~~m~~~-~~~~-~~~~~~~ll~~~~~~g~~ 340 (572)
.+++.+.|+..++-.+++.+.+. .|....+...+.+..|+. ++.-++...+. ..+| +....-.+..+-...|++
T Consensus 270 Aralf~d~~~rKg~~ilE~aWK~--ePHP~ia~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~ 345 (531)
T COG3898 270 ARALFRDGNLRKGSKILETAWKA--EPHPDIALLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEF 345 (531)
T ss_pred HHHHHhccchhhhhhHHHHHHhc--CCChHHHHHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccch
Confidence 34556666666666666666655 344444444444444432 11111111110 1122 233444455555556666
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc-cccHHHHHHHHHHHHHC
Q 008265 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD-AKWWQMALKVKEDMLSA 392 (572)
Q Consensus 341 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~ 392 (572)
..|..--+.... ..|....|..|.+.-.. .|+-.++...+.+..+.
T Consensus 346 ~~ARa~Aeaa~r------~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 346 SAARAKAEAAAR------EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHHHHhh------hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 555554444443 34555555555544332 35556665555555544
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.62 Score=45.36 Aligned_cols=70 Identities=9% Similarity=0.021 Sum_probs=57.3
Q ss_pred CchhhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhc
Q 008265 67 LSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL 142 (572)
Q Consensus 67 p~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~ 142 (572)
|+. ...++.+..+|...|++++|+..|+..++..++.. . ...++.++...|...|++++|++.+++..+.
T Consensus 72 P~~-a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~a--e---A~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKT-AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPD--E---AQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch--H---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444 78899999999999999999999999998854421 1 0134677888899999999999999999885
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.21 Score=44.83 Aligned_cols=102 Identities=12% Similarity=0.008 Sum_probs=79.3
Q ss_pred hHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhh
Q 008265 72 DYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFD 151 (572)
Q Consensus 72 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 151 (572)
..|+.-+. +.+.|++..|...|...++..++ +....+++..+...+...|++++|..+|..+.+. .|+...
T Consensus 143 ~~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~-----s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~--~P~s~K- 213 (262)
T COG1729 143 KLYNAALD-LYKSGDYAEAEQAFQAFIKKYPN-----STYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD--YPKSPK- 213 (262)
T ss_pred HHHHHHHH-HHHcCCHHHHHHHHHHHHHcCCC-----CcccchhHHHHHHHHHhcccchHHHHHHHHHHHh--CCCCCC-
Confidence 46776655 56778899999999999998765 2234777888999999999999999999999886 343221
Q ss_pred hhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhC
Q 008265 152 GSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEF 184 (572)
Q Consensus 152 ~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 184 (572)
.=+.+++....+.+.|+.++|...|+++.+.
T Consensus 214 --ApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 214 --APDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred --ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3345566555667789999999999999875
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=94.74 E-value=4.2 Score=39.13 Aligned_cols=161 Identities=15% Similarity=0.094 Sum_probs=83.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHH----HHHHHHHH--hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008265 261 TIIDVCGICGDYMKSRAIYEDLRSQNV--TLNIY----VFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLK 332 (572)
Q Consensus 261 ~ll~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~----~~~~ll~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 332 (572)
.++-+|....+++...++.+.|....- .++.. .|...+.- ..|+.++|++++..+....-.++..++..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 333347777788888888887776410 00100 11111111 13677788888777555555567777766665
Q ss_pred HHHH---------cCChHHHHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHcc-ccHHHHHHHH---H-HHHHCCC-
Q 008265 333 ACCL---------AGNTVLAQEIYGEVKHLEAKGVLKLDVFT---YSTIVKVFADA-KWWQMALKVK---E-DMLSAGV- 394 (572)
Q Consensus 333 ~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~---~~~li~~~~~~-g~~~~a~~~~---~-~m~~~g~- 394 (572)
.|-. ...++.|+..|.+.-+ +.||.+. +.+|+...... ..-.+..++- . .+.+.|.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe------~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFE------IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHc------CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 5432 1125667777766554 3444432 22222222211 1111222222 1 1122222
Q ss_pred --CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 395 --TPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 395 --~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
..|--.+.+++.++.-.|+.++|.+..++|.+.
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 223334567777888888888888888888765
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=94.72 E-value=6.7 Score=41.40 Aligned_cols=370 Identities=14% Similarity=0.081 Sum_probs=164.3
Q ss_pred cCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCC----CCcc-hhhhhhhHHH
Q 008265 84 DGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGV----APLE-LFDGSGFKLL 158 (572)
Q Consensus 84 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~----~p~~-~~~~~~~~~l 158 (572)
.+++..|.+.++.+...--....+...+....+..++ ..+.+..+++++.++.+..... .|+. ...-..+..+
T Consensus 152 ~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l--~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~ll 229 (608)
T PF10345_consen 152 HKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALL--HLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLL 229 (608)
T ss_pred cccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHH--HhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHH
Confidence 3799999999998876532222222111122222222 2355667778887777644321 1111 1123355566
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHh---CCCCCcccchHH--HHHHHHhcCCC--hHHHHHhhhcCCCch-hHHHHHH--
Q 008265 159 KNECQRLLDSGEVEMFVGLMEVLEE---FRLPVKELDEEF--RIVQLCVNKPD--VNLAIRYACIVPRAD-ILFCNFV-- 228 (572)
Q Consensus 159 ~~~~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~--~ll~~~~~~g~--~~~a~~~~~~~~~~~-~~~~~li-- 228 (572)
++.++.+ ..|+++.+...+.++.+ ..........|. ..+..-...+. .+...-.|.+++..+ .+..-++
T Consensus 230 l~l~~~l-~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~ 308 (608)
T PF10345_consen 230 LDLCCSL-QQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSG 308 (608)
T ss_pred HHHHHHH-HcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHH
Confidence 6666554 45666666655554432 221111000000 00000000000 000033566666655 1111122
Q ss_pred HHHHhcCCHHHHHHHHH-------HHH-hcCCCCc--------HHHHHHHHHH---------HHhcCCHHHHHHHHHHHH
Q 008265 229 REFGKKRDLVSALRAYD-------ASK-KHLSSPN--------MYICRTIIDV---------CGICGDYMKSRAIYEDLR 283 (572)
Q Consensus 229 ~~~~~~g~~~~a~~~~~-------~m~-~~~~~~~--------~~~~~~ll~~---------~~~~g~~~~a~~~~~~m~ 283 (572)
-..+..+..++|.++++ ... .....+. ...|...+.. .+-.|++..|.+.++.|.
T Consensus 309 l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~ 388 (608)
T PF10345_consen 309 LHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMR 388 (608)
T ss_pred HHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 22223343335554444 444 1111111 1222222222 244588999999999887
Q ss_pred hCCC-CC-----CHHHHHHHHHH----hcCChHHHHHHHH--------HHHHcCCCCCHHHHHHH--HHHHHHcC--ChH
Q 008265 284 SQNV-TL-----NIYVFNSLMNV----NAHDLKFTLEVYK--------NMQKLGVMADMASYNIL--LKACCLAG--NTV 341 (572)
Q Consensus 284 ~~g~-~p-----~~~~~~~ll~~----~~~~~~~a~~~~~--------~m~~~~~~~~~~~~~~l--l~~~~~~g--~~~ 341 (572)
+..- .| ....+...+.+ ..|+.+.|+..|. .....+...+..++..+ +-.+...+ ..+
T Consensus 389 ~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~ 468 (608)
T PF10345_consen 389 QLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDS 468 (608)
T ss_pred HHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchh
Confidence 5421 11 12233333333 3489999999997 44455555455444332 11222222 223
Q ss_pred H--HHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHcccc---------HHHHHHHHHHHHHCCCCC-chhhHHHHHHHH
Q 008265 342 L--AQEIYGEVKHLEAKGVLKLDVFTYSTI-VKVFADAKW---------WQMALKVKEDMLSAGVTP-NTITWSSLINAC 408 (572)
Q Consensus 342 ~--a~~~~~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~---------~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~ 408 (572)
+ ..++++.+....... ...+..++..+ +.++..... +.++++.. ..+.|..- -..+++.|-.-+
T Consensus 469 ~~~~~~l~~~i~p~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~--~~~~~n~~l~~~~L~lm~~~l 545 (608)
T PF10345_consen 469 ESELNELLEQIEPLCSNS-PNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMA--NNKLGNSQLLAILLNLMGHRL 545 (608)
T ss_pred hhHHHHHHHhcCccccCC-ccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHH--HHhhccchHHHHHHHHHHHHH
Confidence 3 677777665432111 12233344444 333332211 22333333 01211111 112233333333
Q ss_pred HHcCCHHHHHHHHHHHHH---cCCCCCHHHHH-----HHHHHHHHhCCHhHHHHHHHHhh
Q 008265 409 ANAGLVEQAMHLFEEMLQ---AGCEPNSQCCN-----ILLQACVEACQFDRAFRLFRSWT 460 (572)
Q Consensus 409 ~~~g~~~~a~~~~~~m~~---~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~ 460 (572)
. .|+..+..+....... +..+-....|. .+.+.+...|+.++|..+..+..
T Consensus 546 f-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 546 F-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred H-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 3 5777765555544322 11112344553 34445777899999999887654
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.44 E-value=4.4 Score=38.00 Aligned_cols=148 Identities=16% Similarity=0.217 Sum_probs=86.3
Q ss_pred HHHHHHHHHHhcCC----hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--cCC----hHHHHHHHHHHHHHHHhCCCC
Q 008265 291 IYVFNSLMNVNAHD----LKFTLEVYKNMQKLGVMADMASYNILLKACCL--AGN----TVLAQEIYGEVKHLEAKGVLK 360 (572)
Q Consensus 291 ~~~~~~ll~~~~~~----~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--~g~----~~~a~~~~~~~~~~~~~~~~~ 360 (572)
..++.+++.....+ +.+.+.+++.|.+.|.+-+..+|-+..-.... ..+ ...+..+|+.|++...-= ..
T Consensus 60 ~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fL-Ts 138 (297)
T PF13170_consen 60 RFILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFL-TS 138 (297)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccc-cC
Confidence 44555555554443 44566778888888888777766553333332 222 456778888888632111 23
Q ss_pred CCHHHHHHHHHHHHcccc----HHHHHHHHHHHHHCCCCCchh-hHHHHHHHHHHc-CC--HHHHHHHHHHHHHcCCCCC
Q 008265 361 LDVFTYSTIVKVFADAKW----WQMALKVKEDMLSAGVTPNTI-TWSSLINACANA-GL--VEQAMHLFEEMLQAGCEPN 432 (572)
Q Consensus 361 ~~~~~~~~li~~~~~~g~----~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~-g~--~~~a~~~~~~m~~~~~~p~ 432 (572)
++..++.+++.. ..++ .+.++.+++.+.+.|+..+.. -+.+-+-++... .. +.++.++++.+.+.|+++.
T Consensus 139 ~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik 216 (297)
T PF13170_consen 139 PEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIK 216 (297)
T ss_pred ccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccc
Confidence 455566666544 3333 356777888888877765443 222222222221 11 4577888888888888887
Q ss_pred HHHHHHHHH
Q 008265 433 SQCCNILLQ 441 (572)
Q Consensus 433 ~~~~~~li~ 441 (572)
...|..+.-
T Consensus 217 ~~~yp~lGl 225 (297)
T PF13170_consen 217 YMHYPTLGL 225 (297)
T ss_pred cccccHHHH
Confidence 777665543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.30 E-value=2.9 Score=41.68 Aligned_cols=158 Identities=18% Similarity=0.145 Sum_probs=77.2
Q ss_pred HHHHHhcCCHHHHHHHHH--HHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCh
Q 008265 228 VREFGKKRDLVSALRAYD--ASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDL 305 (572)
Q Consensus 228 i~~~~~~g~~~~a~~~~~--~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 305 (572)
.....-.|+++.+.++.. .+... -+....+.++..+-+.|..+.|+++-.+-..+ -=+...+|++
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~~---i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~r----------FeLAl~lg~L 334 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLPN---IPKDQGQSIARFLEKKGYPELALQFVTDPDHR----------FELALQLGNL 334 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGGG-----HHHHHHHHHHHHHTT-HHHHHHHSS-HHHH----------HHHHHHCT-H
T ss_pred HHHHHHcCChhhhhhhhhhhhhccc---CChhHHHHHHHHHHHCCCHHHHHhhcCChHHH----------hHHHHhcCCH
Confidence 445556688888777765 22211 12456788888888899988888876554322 1111223444
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHH
Q 008265 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385 (572)
Q Consensus 306 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 385 (572)
+.|.++.++. .+...|..|.+...+.|+++-|++.|.+... |..|+--|.-.|+.+...++
T Consensus 335 ~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-------------~~~L~lLy~~~g~~~~L~kl 395 (443)
T PF04053_consen 335 DIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD-------------FSGLLLLYSSTGDREKLSKL 395 (443)
T ss_dssp HHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT--------------HHHHHHHHHHCT-HHHHHHH
T ss_pred HHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-------------ccccHHHHHHhCCHHHHHHH
Confidence 4444433222 2455666666666666666666666654331 23344444555555555555
Q ss_pred HHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHH
Q 008265 386 KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE 423 (572)
Q Consensus 386 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 423 (572)
.+.....|- ++..+.++.-.|++++..+++.+
T Consensus 396 ~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 396 AKIAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 555444322 34445555555665555555443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.22 E-value=3.7 Score=36.34 Aligned_cols=201 Identities=13% Similarity=0.106 Sum_probs=104.2
Q ss_pred hhHHHHHHHhHhhcCChhHHHHHHHHHHhh-cCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcch
Q 008265 71 NDYYADMASKLAKDGRLEEFAMIVESVVVS-EGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (572)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 149 (572)
...|.....+|....++++|...+.+..+- .-+.+-|. ..+.++.|.-+.++|.+.
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfh----------------AAKayEqaamLake~~kl------- 87 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFH----------------AAKAYEQAAMLAKELSKL------- 87 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHH----------------HHHHHHHHHHHHHHHHHh-------
Confidence 566777888888889999988877766532 11111111 223344444444444442
Q ss_pred hhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcC----CCc-----
Q 008265 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRA----- 220 (572)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~----- 220 (572)
+.....+-+++..+..+|..+-|-..+++.-+. .++-+++.|++++.+. ..+
T Consensus 88 --sEvvdl~eKAs~lY~E~GspdtAAmaleKAak~-----------------lenv~Pd~AlqlYqralavve~~dr~~m 148 (308)
T KOG1585|consen 88 --SEVVDLYEKASELYVECGSPDTAAMALEKAAKA-----------------LENVKPDDALQLYQRALAVVEEDDRDQM 148 (308)
T ss_pred --HHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHH-----------------hhcCCHHHHHHHHHHHHHHHhccchHHH
Confidence 113333344444455556655555555443211 1122233333333221 111
Q ss_pred -hhHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCCcH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCH
Q 008265 221 -DILFCNFVREFGKKRDLVSALRAYDASKK----HLSSPNM-YICRTIIDVCGICGDYMKSRAIYEDLRSQN---VTLNI 291 (572)
Q Consensus 221 -~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g---~~p~~ 291 (572)
...+..+-+.+.+...+++|-..|.+-.. ..--++. ..|-..|-.|.-..++..|...++.--+.+ -.-+.
T Consensus 149 a~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~ 228 (308)
T KOG1585|consen 149 AFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDS 228 (308)
T ss_pred HHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHH
Confidence 13445556666666777666555443211 1111222 235555556666778888888888744432 23356
Q ss_pred HHHHHHHHHhc-CChHHHHHHHH
Q 008265 292 YVFNSLMNVNA-HDLKFTLEVYK 313 (572)
Q Consensus 292 ~~~~~ll~~~~-~~~~~a~~~~~ 313 (572)
.+...||.+|- |+.+++..++.
T Consensus 229 r~lenLL~ayd~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 229 RSLENLLTAYDEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHHHhccCCHHHHHHHHc
Confidence 77888888876 67777665543
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.10 E-value=2.1 Score=35.63 Aligned_cols=122 Identities=9% Similarity=0.022 Sum_probs=64.8
Q ss_pred HHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCch--------hHHHHHHHHHHhcC
Q 008265 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRAD--------ILFCNFVREFGKKR 235 (572)
Q Consensus 164 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~li~~~~~~g 235 (572)
.++..+..++|+.-|..+.+.|..--.+...........+.|+...|...|+.+..+. ..--.-.-.+...|
T Consensus 67 ~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 67 KLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccc
Confidence 3456789999999999998877543222223334445556666666666666542221 11111122334455
Q ss_pred CHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008265 236 DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (572)
Q Consensus 236 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 285 (572)
.++....-.+-+...+-+.-...-..|--+-.+.|++.+|.+.|..+...
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 66665555555444332222333334444445556666666666665543
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.97 E-value=5.9 Score=37.71 Aligned_cols=281 Identities=12% Similarity=0.049 Sum_probs=181.6
Q ss_pred hhhHHHHHHHHHHHHhCCCCCcccchHHHHH--HHHhcCCChHHHHHhhhcCCCchhHHH----HHHHHHHhcCCHHHHH
Q 008265 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIV--QLCVNKPDVNLAIRYACIVPRADILFC----NFVREFGKKRDLVSAL 241 (572)
Q Consensus 168 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll--~~~~~~g~~~~a~~~~~~~~~~~~~~~----~li~~~~~~g~~~~a~ 241 (572)
.|+-..|.++-.+-.+. -..+......++ ++..-.|+++.|.+-|+.|..+..+-. .|.-..-+.|+.+-|.
T Consensus 97 AGda~lARkmt~~~~~l--lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr 174 (531)
T COG3898 97 AGDASLARKMTARASKL--LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAAR 174 (531)
T ss_pred cCchHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHH
Confidence 67777777765543211 111222233343 344457999999999999988775433 3444456779999999
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCH--HHHHHHHHHhc-----CChHHHHHHHH
Q 008265 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN-VTLNI--YVFNSLMNVNA-----HDLKFTLEVYK 313 (572)
Q Consensus 242 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-~~p~~--~~~~~ll~~~~-----~~~~~a~~~~~ 313 (572)
+.-+..-+.-.. -...+...+...+..|+|+.|+++.+.-+... +.++. ..-..|+.+.+ -+...|...-.
T Consensus 175 ~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~ 253 (531)
T COG3898 175 HYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDAL 253 (531)
T ss_pred HHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 888877654222 24578899999999999999999998876542 34443 33445566544 25556666555
Q ss_pred HHHHcCCCCCHHH-HHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHC
Q 008265 314 NMQKLGVMADMAS-YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (572)
Q Consensus 314 ~m~~~~~~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 392 (572)
+..+ ..||..- --....++.+.|+..++-.+++.+-+ ..|....+...+ +.+.|+. ++.-++...+.
T Consensus 254 ~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK------~ePHP~ia~lY~--~ar~gdt--a~dRlkRa~~L 321 (531)
T COG3898 254 EANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWK------AEPHPDIALLYV--RARSGDT--ALDRLKRAKKL 321 (531)
T ss_pred HHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHh------cCCChHHHHHHH--HhcCCCc--HHHHHHHHHHH
Confidence 5544 4555433 23345778899999999999999876 456666654433 4455542 22222221110
Q ss_pred -CCCC-chhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HhCCHhHHHHHHHHhhhcccc
Q 008265 393 -GVTP-NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV-EACQFDRAFRLFRSWTLSKTQ 465 (572)
Q Consensus 393 -g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~ 465 (572)
.++| +..+.-.+..+-...|++..|..--+..... .|....|..|.+.-. ..|+-.++...+.+-.+..-.
T Consensus 322 ~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrd 395 (531)
T COG3898 322 ESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRD 395 (531)
T ss_pred HhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCC
Confidence 1233 4466677778888889998888776666554 788888888877644 449999999888876654433
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.97 E-value=3.2 Score=34.61 Aligned_cols=139 Identities=12% Similarity=0.048 Sum_probs=86.9
Q ss_pred hhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcch
Q 008265 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (572)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 149 (572)
+.+.|...+. ++..+..++|+..|..+...|... |.. -..........+.|+-..|+..|.++-.....|...
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~--Ypv----LA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~ 130 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGS--YPV----LARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIG 130 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCc--chH----HHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchh
Confidence 3566666554 677888999999999999887641 111 112223344668899999999999987775555443
Q ss_pred hhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHH
Q 008265 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVR 229 (572)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~ 229 (572)
.+..- +++.-.+.+.|.+++.....+.+...+-+.+. ..-..|.-
T Consensus 131 rd~AR----lraa~lLvD~gsy~dV~srvepLa~d~n~mR~-------------------------------sArEALgl 175 (221)
T COG4649 131 RDLAR----LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRH-------------------------------SAREALGL 175 (221)
T ss_pred hHHHH----HHHHHHHhccccHHHHHHHhhhccCCCChhHH-------------------------------HHHHHHhH
Confidence 22222 22223456678888887777766544322211 23344556
Q ss_pred HHHhcCCHHHHHHHHHHHHhc
Q 008265 230 EFGKKRDLVSALRAYDASKKH 250 (572)
Q Consensus 230 ~~~~~g~~~~a~~~~~~m~~~ 250 (572)
+..+.|++.+|.+.|..+...
T Consensus 176 Aa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 176 AAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHhccchHHHHHHHHHHHcc
Confidence 666778888888888777654
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.90 E-value=3 Score=34.08 Aligned_cols=83 Identities=17% Similarity=0.093 Sum_probs=37.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 008265 261 TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH-DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339 (572)
Q Consensus 261 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 339 (572)
.++..+.+.+.......+++.+...+ ..+...++.++..++. +.+..++.+.. ..+......++..|.+.+.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDPQKEIERLDN------KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCHHHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence 34444444455555555555554443 1344444444444442 22233333321 1122233345556666666
Q ss_pred hHHHHHHHHHH
Q 008265 340 TVLAQEIYGEV 350 (572)
Q Consensus 340 ~~~a~~~~~~~ 350 (572)
++++..++..+
T Consensus 85 ~~~~~~l~~k~ 95 (140)
T smart00299 85 YEEAVELYKKD 95 (140)
T ss_pred HHHHHHHHHhh
Confidence 66666666544
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.89 E-value=1.8 Score=35.00 Aligned_cols=68 Identities=10% Similarity=0.065 Sum_probs=54.2
Q ss_pred hhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhc
Q 008265 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL 142 (572)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~ 142 (572)
+...+-.-.....+.|++++|++.|+.+..+-+... + ...+...++.++.+.+++++|+..+++.++.
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~-y----a~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGE-Y----AEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCc-c----cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 345555556677789999999999999998754321 2 2566777889999999999999999999887
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.88 E-value=6.7 Score=39.73 Aligned_cols=156 Identities=13% Similarity=0.031 Sum_probs=104.8
Q ss_pred HhcCChHHHHHHHHHHHHc-CCCCCH-----HHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008265 300 VNAHDLKFTLEVYKNMQKL-GVMADM-----ASYNILLKACCL----AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369 (572)
Q Consensus 300 ~~~~~~~~a~~~~~~m~~~-~~~~~~-----~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 369 (572)
++.||-+.+++.+.+..+. ++.-.. ..|..++..++. ..+.+.|.+++..+.+ .-|+...|...
T Consensus 199 GF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~------~yP~s~lfl~~ 272 (468)
T PF10300_consen 199 GFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLK------RYPNSALFLFF 272 (468)
T ss_pred CcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHH------hCCCcHHHHHH
Confidence 3558888898888877653 333211 124444444433 4567889999999987 35777766544
Q ss_pred H-HHHHccccHHHHHHHHHHHHHCCC---CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HH
Q 008265 370 V-KVFADAKWWQMALKVKEDMLSAGV---TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA-CV 444 (572)
Q Consensus 370 i-~~~~~~g~~~~a~~~~~~m~~~g~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~ 444 (572)
- +.+...|++++|++.|+....... ......+--+..++....++++|.+.|..+.+.. .-+..+|.-+..+ +.
T Consensus 273 ~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~ 351 (468)
T PF10300_consen 273 EGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACLL 351 (468)
T ss_pred HHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHH
Confidence 3 456678999999999997653211 1233455667778888999999999999998754 3345555555444 44
Q ss_pred HhCCH-------hHHHHHHHHhhhc
Q 008265 445 EACQF-------DRAFRLFRSWTLS 462 (572)
Q Consensus 445 ~~g~~-------~~A~~~~~~m~~~ 462 (572)
..|+. ++|.++|.+....
T Consensus 352 ~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 352 MLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred hhccchhhhhhHHHHHHHHHHHHHH
Confidence 56777 8888898887643
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.9 Score=37.67 Aligned_cols=89 Identities=11% Similarity=-0.051 Sum_probs=70.9
Q ss_pred HHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHh
Q 008265 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFD 450 (572)
Q Consensus 371 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 450 (572)
.-+...|++++|..+|+-+...+.. +..-|..|..+|-..+++++|...|...-..+ .-|...+-....++...|+.+
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHH
Confidence 3456789999999999998877554 56667888888999999999999999876543 223333555677899999999
Q ss_pred HHHHHHHHhhh
Q 008265 451 RAFRLFRSWTL 461 (572)
Q Consensus 451 ~A~~~~~~m~~ 461 (572)
.|...|+...+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999988775
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.64 E-value=3 Score=33.75 Aligned_cols=78 Identities=8% Similarity=0.039 Sum_probs=47.0
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHc
Q 008265 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411 (572)
Q Consensus 332 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 411 (572)
....+.|++++|.+.|+.+...-..| +-....--.|+.+|.+.+++++|...+++..+....--.+-|-..+.+++..
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g--~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFG--EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 34455677777777777776542222 2233455567777777788888777777777664332234455555555443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=93.33 E-value=8.5 Score=37.51 Aligned_cols=157 Identities=12% Similarity=-0.023 Sum_probs=80.5
Q ss_pred HhhcCChhHHHHHHHHHHhhcC-ChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHH
Q 008265 81 LAKDGRLEEFAMIVESVVVSEG-NVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLK 159 (572)
Q Consensus 81 ~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~ 159 (572)
+-+.++..+|.++|.++.+..- .| ..+..+.+...|....-..+.+.....+..+.+. .|... +-.++..+.
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~----f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~--~~~s~-~l~LF~~L~ 88 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSP----FLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQ--FGKSA-YLPLFKALV 88 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcch----HHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHh--cCCch-HHHHHHHHH
Confidence 3456899999999999886532 22 2233344444433334445566666666666554 23221 333444443
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHhC--CCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCH
Q 008265 160 NECQRLLDSGEVEMFVGLMEVLEEF--RLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDL 237 (572)
Q Consensus 160 ~~~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~ 237 (572)
. -+.+.++.|++.+..-... +..+.- .+.= +...-.+-..-+..++.+...|.+
T Consensus 89 ~-----Y~~k~~~kal~~ls~w~~~~~~~~~~~---Ld~n----------------i~~l~~df~l~~i~a~sLIe~g~f 144 (549)
T PF07079_consen 89 A-----YKQKEYRKALQALSVWKEQIKGTESPW---LDTN----------------IQQLFSDFFLDEIEAHSLIETGRF 144 (549)
T ss_pred H-----HHhhhHHHHHHHHHHHHhhhcccccch---hhhh----------------HHHHhhHHHHHHHHHHHHHhcCCc
Confidence 2 3578899998887765543 211110 0000 000000112233455666666777
Q ss_pred HHHHHHHHHHHhcCCC----CcHHHHHHHHHHHHh
Q 008265 238 VSALRAYDASKKHLSS----PNMYICRTIIDVCGI 268 (572)
Q Consensus 238 ~~a~~~~~~m~~~~~~----~~~~~~~~ll~~~~~ 268 (572)
.++..++++|...-++ -+..+|+.++-.+++
T Consensus 145 ~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsr 179 (549)
T PF07079_consen 145 SEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSR 179 (549)
T ss_pred chHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhH
Confidence 7776666666544322 455666654444433
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.27 E-value=2.8 Score=40.04 Aligned_cols=128 Identities=13% Similarity=0.131 Sum_probs=87.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHhCC----------CCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhH
Q 008265 332 KACCLAGNTVLAQEIYGEVKHLEAKGV----------LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401 (572)
Q Consensus 332 ~~~~~~g~~~~a~~~~~~~~~~~~~~~----------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 401 (572)
+.|.+.|++..|...|+.....-.... ...-..+++.+.-+|.+.+++.+|++.-....+.+. +|....
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP-NNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-CchhHH
Confidence 445666777776666666443211000 112245677888889999999999999999888753 477777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHHhCCH-hHHHHHHHHhhhc
Q 008265 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQC-CNILLQACVEACQF-DRAFRLFRSWTLS 462 (572)
Q Consensus 402 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~li~~~~~~g~~-~~A~~~~~~m~~~ 462 (572)
----.+|...|+++.|+..|+.+++. .|+... -+.|+..-.+.... +...++|..|-..
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 77788999999999999999999986 555444 44454444444443 4557888888653
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.10 E-value=2.3 Score=40.64 Aligned_cols=122 Identities=14% Similarity=0.062 Sum_probs=89.9
Q ss_pred HHHHccccHHHHHHHHHHHHHC-----CC---------CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 008265 371 KVFADAKWWQMALKVKEDMLSA-----GV---------TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436 (572)
Q Consensus 371 ~~~~~~g~~~~a~~~~~~m~~~-----g~---------~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 436 (572)
+.|.+.|++..|...|+..... +. ..-..++..+.-+|.+.+++.+|++.-+..+..+ ++|....
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 4577788888887777765432 11 1122356778888999999999999999998876 6677666
Q ss_pred HHHHHHHHHhCCHhHHHHHHHHhhhcccccccccccCCchHHHHhhhhhccccccCCCCcccCCccchhhhhcCCCCCHH
Q 008265 437 NILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTT 516 (572)
Q Consensus 437 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 516 (572)
--=-.+|...|+++.|+..|+++.+ +.|+..
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k-------------------------------------------------~~P~Nk 325 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALK-------------------------------------------------LEPSNK 325 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHH-------------------------------------------------hCCCcH
Confidence 6667889999999999999999886 467666
Q ss_pred HHHHHHHHHhhc----HHHHHHHHHHHHhC
Q 008265 517 TYNILMKACCTD----YYRVKALMNEMRTV 542 (572)
Q Consensus 517 ~~~~ll~a~~~~----~~~a~~~~~~m~~~ 542 (572)
.-+.=|..|.+. -+...++|..|...
T Consensus 326 a~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 326 AARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 666666666542 35667788888753
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.93 E-value=1.3 Score=40.64 Aligned_cols=62 Identities=15% Similarity=0.208 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 399 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
.++..++..+...|+.+.+.+.++++.... +-+...|..+|.+|.+.|+...|+..|+++.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 345566666777777777777777777654 44667777777777777777777777777664
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.80 E-value=15 Score=38.84 Aligned_cols=179 Identities=12% Similarity=0.070 Sum_probs=119.6
Q ss_pred HHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhh
Q 008265 74 YADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGS 153 (572)
Q Consensus 74 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 153 (572)
...-|..+.+...++.|+.+-+. .+..++. ..++......-+.+.|++++|...|-+-... +.|..
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~-----~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s~----- 402 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKS---QHLDEDT-----LAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPSE----- 402 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHh---cCCCHHH-----HHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChHH-----
Confidence 34445555666666666655442 2333321 1333444455567889999999988765543 34422
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCch--hHHHHHHHHH
Q 008265 154 GFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRAD--ILFCNFVREF 231 (572)
Q Consensus 154 ~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~li~~~ 231 (572)
. + ..+.+..+..+-..+++.+.+.|+.-.+ ....|+..|.+.++.+.-.++.+..+... .-....+..+
T Consensus 403 V----i---~kfLdaq~IknLt~YLe~L~~~gla~~d--httlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Il 473 (933)
T KOG2114|consen 403 V----I---KKFLDAQRIKNLTSYLEALHKKGLANSD--HTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEIL 473 (933)
T ss_pred H----H---HHhcCHHHHHHHHHHHHHHHHcccccch--hHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHH
Confidence 1 1 2345577888888999999999886554 45679999999999999999888877332 2366788888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008265 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283 (572)
Q Consensus 232 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 283 (572)
.+.+-.++|..+-..... .......+ +-..|++++|++.+..|.
T Consensus 474 r~snyl~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 474 RKSNYLDEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHhChHHHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCC
Confidence 888888888877665443 33333444 346788999999988774
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=92.72 E-value=4.1 Score=32.26 Aligned_cols=67 Identities=12% Similarity=0.046 Sum_probs=47.8
Q ss_pred chhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhccc
Q 008265 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKT 464 (572)
Q Consensus 397 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 464 (572)
+.......+..+...|+-++-.+++.++.+.+ .++......+..||.+.|+..++.+++.+.=+.|.
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 44556777888888899999889988887644 77888888999999999999999999988776664
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=92.62 E-value=4.3 Score=32.18 Aligned_cols=138 Identities=13% Similarity=0.127 Sum_probs=67.4
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHH
Q 008265 234 KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYK 313 (572)
Q Consensus 234 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~a~~~~~ 313 (572)
.|.+++..+++.+.... .+..-||.+|.-....-+-+-..++++..-+- .|. ..++++.....-+-
T Consensus 15 dG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDi--------s~C~NlKrVi~C~~ 80 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDI--------SKCGNLKRVIECYA 80 (161)
T ss_dssp TT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-G--------GG-S-THHHHHHHH
T ss_pred hchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc--------hhhcchHHHHHHHH
Confidence 36666666666666553 34555666665555555555555555544332 110 01233333333332
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCC
Q 008265 314 NMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393 (572)
Q Consensus 314 ~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 393 (572)
.+- .+...+...+....+.|+-+.-.+++.++.+ . -.++....-.+..+|.+.|+..++.+++.+.-+.|
T Consensus 81 ~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~k---n--~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 81 KRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKK---N--EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH----------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred Hhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhh---c--cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 221 2344555666666777777766666666653 1 14556666666677777777777777777776666
Q ss_pred CC
Q 008265 394 VT 395 (572)
Q Consensus 394 ~~ 395 (572)
++
T Consensus 151 ~k 152 (161)
T PF09205_consen 151 LK 152 (161)
T ss_dssp -H
T ss_pred hH
Confidence 53
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=92.50 E-value=5 Score=32.72 Aligned_cols=110 Identities=11% Similarity=0.118 Sum_probs=65.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHH
Q 008265 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407 (572)
Q Consensus 328 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 407 (572)
..++..+.+.+........++.+.. .+ ..+...++.++..|++.+ ..+.++.+.. ..+......++..
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~---~~--~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~ 78 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALK---LN--SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKL 78 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHc---cC--ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHH
Confidence 4566666667777777777777664 22 245567777777777653 3344444442 1244555667777
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh-CCHhHHHHHHHH
Q 008265 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA-CQFDRAFRLFRS 458 (572)
Q Consensus 408 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~ 458 (572)
|.+.+.++++..++..+.. +...+..+.+. ++.+.|.+++.+
T Consensus 79 c~~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 79 CEKAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred HHHcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh
Confidence 7777777777777766532 22223333333 677777776653
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=92.45 E-value=20 Score=39.54 Aligned_cols=113 Identities=15% Similarity=0.059 Sum_probs=67.7
Q ss_pred CCCHHHHHHHHHHhc------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCC
Q 008265 288 TLNIYVFNSLMNVNA------HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL 361 (572)
Q Consensus 288 ~p~~~~~~~ll~~~~------~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 361 (572)
.|+...+..+..+|+ ..+++|--.|...-+ ..-.+.+|..+|+|++|..+-.++.. .-
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~-------~~ 995 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSE-------GK 995 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcC-------CH
Confidence 567777776666554 245555555544332 22346778888888888888776652 12
Q ss_pred CHHH--HHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 008265 362 DVFT--YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424 (572)
Q Consensus 362 ~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 424 (572)
+... --.|+.-+...++.-+|-++..+.... ..-.+..|++...+++|.++-..-
T Consensus 996 de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 996 DELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 2222 255667777788887777777776542 222344455556677776665544
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.95 E-value=5.3 Score=37.14 Aligned_cols=152 Identities=10% Similarity=0.038 Sum_probs=91.9
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHh----cCChHHH
Q 008265 234 KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ-NVTLNIYVFNSLMNVN----AHDLKFT 308 (572)
Q Consensus 234 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~----~~~~~~a 308 (572)
.|+..+|...++++.+. .+.|...++-.=++|.-.|+.+.-...++++... +-.....+|..=|.++ +|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 46777777777777764 4557777777778888888888888888777644 3222334444434443 2677888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHH
Q 008265 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388 (572)
Q Consensus 309 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 388 (572)
.+.-++..+.+. -|.-.-.++.+.+--.|++.++.++..+-...-+.+.... ..-|-...-.+...+.++.|+++|+.
T Consensus 195 Ek~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mla-sHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 195 EKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLA-SHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHH-hhhhHHHHHhhhcccchhHHHHHHHH
Confidence 877777766542 2555666677777778888888877655433111110001 11122222234455788888888874
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=91.87 E-value=6.9 Score=32.88 Aligned_cols=133 Identities=11% Similarity=0.037 Sum_probs=74.3
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 008265 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVM 321 (572)
Q Consensus 242 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~ 321 (572)
+.+..+.+.++.|+...|..+++.+.+.|++... ..+...++-+|.......+-...+....+.++--+|.+.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkR--- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKR--- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHH---
Confidence 3455566678888888888899988888876543 444555566666655555544444444444443344331
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHH
Q 008265 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390 (572)
Q Consensus 322 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 390 (572)
=...+..++..+...|++-+|.++.+.... .+......++.+..+.++..--..+++-..
T Consensus 88 -L~~~~~~iievLL~~g~vl~ALr~ar~~~~--------~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 88 -LGTAYEEIIEVLLSKGQVLEALRYARQYHK--------VDSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred -hhhhHHHHHHHHHhCCCHHHHHHHHHHcCC--------cccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 011355566677777777777777665421 122222344555555555444444443333
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.79 E-value=2.8 Score=37.92 Aligned_cols=99 Identities=11% Similarity=0.085 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCC-CC-chhhHHH
Q 008265 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV-TP-NTITWSS 403 (572)
Q Consensus 326 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p-~~~~~~~ 403 (572)
.|+..+.. .+.|++.+|...|....+.-..+...| ..+--|..++...|+++.|..+|..+.+.-. .| -...+--
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~--nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTP--NAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccc--hhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 45555443 345667777777777765332222222 2344466677777777777777777665411 11 1134555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 404 LINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 404 li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
|..+..+.|+.++|..+|+++.+.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 566666777777777777777654
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.67 E-value=8.7 Score=35.82 Aligned_cols=153 Identities=5% Similarity=-0.058 Sum_probs=87.2
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH--HHHhcCChHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHcCChH
Q 008265 267 GICGDYMKSRAIYEDLRSQNVTLNIYVFNSL--MNVNAHDLKFTLEVYKNMQKL---GVMADMASYNILLKACCLAGNTV 341 (572)
Q Consensus 267 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l--l~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~ll~~~~~~g~~~ 341 (572)
-..|+..+|-..++++.+. .+-|...++.. ...|.|+.+.-...++++... +++...+.-....-++..+|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3457777777777777765 23344444333 333557777777777776542 22222223333444555788888
Q ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCC---CchhhHHHHHHHHHHcCCHHHHH
Q 008265 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT---PNTITWSSLINACANAGLVEQAM 418 (572)
Q Consensus 342 ~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~---p~~~~~~~li~~~~~~g~~~~a~ 418 (572)
+|++.-++..++ -+.|.-.-.+....+--.|++.++.+.+.+-...=-. .-..-|-...-.+...+.++.|+
T Consensus 193 dAEk~A~ralqi-----N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~al 267 (491)
T KOG2610|consen 193 DAEKQADRALQI-----NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKAL 267 (491)
T ss_pred hHHHHHHhhccC-----CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHH
Confidence 888888777763 1345555566666666778888888877664432000 00011222233345557888888
Q ss_pred HHHHHHH
Q 008265 419 HLFEEML 425 (572)
Q Consensus 419 ~~~~~m~ 425 (572)
++|+.-.
T Consensus 268 eIyD~ei 274 (491)
T KOG2610|consen 268 EIYDREI 274 (491)
T ss_pred HHHHHHH
Confidence 8887543
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=91.64 E-value=14 Score=35.80 Aligned_cols=204 Identities=15% Similarity=0.079 Sum_probs=101.0
Q ss_pred HHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHH
Q 008265 131 CVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLA 210 (572)
Q Consensus 131 ~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 210 (572)
+..+.+..|.++=-.|... .-.+++.....+.+..+++..+++++.|... |.....
T Consensus 121 ~l~~~L~~i~~rLd~~~~l----s~div~~lllSyRdiqdydamI~Lve~l~~~---p~~~~~----------------- 176 (374)
T PF13281_consen 121 ELAKELRRIRQRLDDPELL----SPDIVINLLLSYRDIQDYDAMIKLVETLEAL---PTCDVA----------------- 176 (374)
T ss_pred HHHHHHHHHHHhhCCHhhc----ChhHHHHHHHHhhhhhhHHHHHHHHHHhhcc---Cccchh-----------------
Confidence 4444555555542233333 2223333334566678999999999988653 111010
Q ss_pred HHhhhcCCCchhHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 008265 211 IRYACIVPRADILFCNFVREFGK---KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287 (572)
Q Consensus 211 ~~~~~~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 287 (572)
....+-....-++-+ .|+.++|++++..+......++..+|..+.+.|-.. ....-
T Consensus 177 --------~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~-------------~~~s~ 235 (374)
T PF13281_consen 177 --------NQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDL-------------FLESN 235 (374)
T ss_pred --------cchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHH-------------HHHcC
Confidence 011122223334444 789999999998866665667778887777655322 11100
Q ss_pred CCCHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh----HHHHHHHHHHHH-HHHhCCC--C
Q 008265 288 TLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT----VLAQEIYGEVKH-LEAKGVL--K 360 (572)
Q Consensus 288 ~p~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~----~~a~~~~~~~~~-~~~~~~~--~ 360 (572)
.-|... .++|...|.+.-+. .||...--.++..+.-.|.. .+..++--.+.. .++.|.. .
T Consensus 236 ~~d~~~-----------ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 236 FTDRES-----------LDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred ccchHH-----------HHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 001111 34444444443332 23332222222222222221 111222111110 1112222 2
Q ss_pred CCHHHHHHHHHHHHccccHHHHHHHHHHHHHC
Q 008265 361 LDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (572)
Q Consensus 361 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 392 (572)
.+--.+.+++.++.-.|+.++|.+..++|.+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 34446677888888899999999999998865
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=91.56 E-value=7.8 Score=32.87 Aligned_cols=98 Identities=9% Similarity=0.113 Sum_probs=48.1
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc--CChHHHHHHHHHHHHcC---CCCCHHHH
Q 008265 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLG---VMADMASY 327 (572)
Q Consensus 253 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~~---~~~~~~~~ 327 (572)
.|+...--.+..+..+.|+..+|...|++...--+.-|....-.+-++.- ++.-.+..+++.+.+.+ -.||. .
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~--~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG--H 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc--h
Confidence 35555556666777777777777777777665333333333333333321 34444444444444322 11221 2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHH
Q 008265 328 NILLKACCLAGNTVLAQEIYGEVKH 352 (572)
Q Consensus 328 ~~ll~~~~~~g~~~~a~~~~~~~~~ 352 (572)
-.+...+...|+..+|+..|+....
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHH
Confidence 2233444445555555555555443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.31 E-value=2.8 Score=38.49 Aligned_cols=77 Identities=9% Similarity=0.190 Sum_probs=47.0
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHHHHHH
Q 008265 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ-----AGCEPNSQCCNIL 439 (572)
Q Consensus 365 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~~~l 439 (572)
++..++..+...|+++.+.+.++++...... +...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 4555566666666666666666666655322 555666666666666666666666665543 5677776665555
Q ss_pred HHH
Q 008265 440 LQA 442 (572)
Q Consensus 440 i~~ 442 (572)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 544
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.27 E-value=20 Score=37.06 Aligned_cols=56 Identities=5% Similarity=-0.142 Sum_probs=40.4
Q ss_pred CcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008265 188 VKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDAS 247 (572)
Q Consensus 188 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 247 (572)
|.+....-.+.+++...|..++|.+.|-+.... ...+..|...++|.+|.++-...
T Consensus 849 pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~p----kaAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 849 PEDSELLPVMADMFTSVGMCDQAVEAYLRRSLP----KAAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred CcccchHHHHHHHHHhhchHHHHHHHHHhccCc----HHHHHHHHHHHHHHHHHHHHHhc
Confidence 555566778899999999999998876554222 24567778888888888776543
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.03 E-value=6.2 Score=32.72 Aligned_cols=31 Identities=16% Similarity=0.064 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHHHhC
Q 008265 154 GFKLLKNECQRLLDSGEVEMFVGLMEVLEEF 184 (572)
Q Consensus 154 ~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 184 (572)
+++.++.....-.+.++.+++..+++-+.-.
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvL 39 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVL 39 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHh
Confidence 4455555544445567888888888877653
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=90.98 E-value=2.5 Score=36.16 Aligned_cols=64 Identities=25% Similarity=0.422 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008265 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPN--MYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (572)
Q Consensus 222 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 285 (572)
..+..+...|.+.|+.++|.+.|.++.+....+. ...+-.+|+...-.|++..+.....+....
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 5677889999999999999999999988754443 346778888888899999988888776643
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.87 E-value=3.8 Score=37.70 Aligned_cols=102 Identities=14% Similarity=0.093 Sum_probs=73.2
Q ss_pred CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCCHHH
Q 008265 251 LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN---VTLNIYVFNSLMNVNA-HDLKFTLEVYKNMQKLGVMADMAS 326 (572)
Q Consensus 251 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~~~~~ll~~~~-~~~~~a~~~~~~m~~~~~~~~~~~ 326 (572)
|......+...++..-....+.+.+...+-+++... ..|+... .++++-+. -++++++.++..=++.|+-||..+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlllky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLLKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHHccChHHHHHHHhCcchhccccchhh
Confidence 444455555666665566677888888888887641 2222222 22333322 367788888888889999999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHH
Q 008265 327 YNILLKACCLAGNTVLAQEIYGEVKHL 353 (572)
Q Consensus 327 ~~~ll~~~~~~g~~~~a~~~~~~~~~~ 353 (572)
++.+|+.+.+.+++.+|.++.-.|...
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999999999988887754
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=90.76 E-value=30 Score=38.26 Aligned_cols=116 Identities=14% Similarity=0.168 Sum_probs=74.6
Q ss_pred CCCHHHHHHHHHHH----HHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCC
Q 008265 321 MADMASYNILLKAC----CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396 (572)
Q Consensus 321 ~~~~~~~~~ll~~~----~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 396 (572)
.|+...+..+..+| .....+++|.-+|+..-++ .-.+.+|..+|+|.+|+.+..++... .
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl-------------ekAl~a~~~~~dWr~~l~~a~ql~~~---~ 995 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL-------------EKALKAYKECGDWREALSLAAQLSEG---K 995 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH-------------HHHHHHHHHhccHHHHHHHHHhhcCC---H
Confidence 45555555444443 3456667776666654331 12357778888888888888877532 2
Q ss_pred chhh--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhh
Q 008265 397 NTIT--WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (572)
Q Consensus 397 ~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (572)
|... -..|+.-+...++.-+|-++..+.... ..-.+..+++...|++|.++-..-.
T Consensus 996 de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 996 DELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 3322 256778888888888888888877643 2334456677778888888776554
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.68 E-value=6.3 Score=31.17 Aligned_cols=92 Identities=14% Similarity=-0.006 Sum_probs=56.4
Q ss_pred HHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHHhCC
Q 008265 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQC---CNILLQACVEACQ 448 (572)
Q Consensus 372 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~ 448 (572)
+.+..|+++.|++.|.+....-. -....||.-.+++.-.|+.++|++=+++..+..-.-+... |..-...|-..|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P-~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAP-ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcc-cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 45566777777777777665422 2456677777777777777777777777665321222222 2222233556777
Q ss_pred HhHHHHHHHHhhhccc
Q 008265 449 FDRAFRLFRSWTLSKT 464 (572)
Q Consensus 449 ~~~A~~~~~~m~~~~~ 464 (572)
.+.|..=|+..-+.|.
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 7888777777666553
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.56 E-value=12 Score=34.34 Aligned_cols=51 Identities=10% Similarity=0.141 Sum_probs=22.2
Q ss_pred hhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCC
Q 008265 166 LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVP 218 (572)
Q Consensus 166 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 218 (572)
...|++.+|..+|....+.. +.+......+...|...|+.+.|..++..+|
T Consensus 145 ~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 34455555555555544431 2222233334444444444444444444443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.55 E-value=13 Score=33.53 Aligned_cols=71 Identities=11% Similarity=-0.021 Sum_probs=45.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008265 230 EFGKKRDLVSALRAYDASKKHL--SSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV 300 (572)
Q Consensus 230 ~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 300 (572)
.-.+.|++++|.+.|+.+..+- -+-...+.-.++.++-+.+++++|...+++....-..-...-|...|.+
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylkg 115 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKG 115 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHH
Confidence 3446688888888888887552 1223456667777888888888888888887765222222334444443
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=90.40 E-value=4.8 Score=32.73 Aligned_cols=64 Identities=13% Similarity=-0.027 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCC
Q 008265 154 GFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR 219 (572)
Q Consensus 154 ~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 219 (572)
..+.++.....-...++.+++..+++.|.-.. |.....-..-.-.+...|++++|.++|+.+..
T Consensus 9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLr--P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 9 LLGGLIEVLMYALRSADPYDAQAMLDALRVLR--PNLKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 44444444444444688888888888876543 33322211122233344445555444444433
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.26 E-value=7.8 Score=30.67 Aligned_cols=91 Identities=19% Similarity=0.057 Sum_probs=55.6
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhh---HHHHHHHHH
Q 008265 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT---WSSLINACA 409 (572)
Q Consensus 333 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~---~~~li~~~~ 409 (572)
+.+..|+++.|++.|.+...+ .+-....||.-..++--.|+.++|++=+++..+..-..+... |.--...|.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-----~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-----APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-----cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 456677777777777777653 234556777777777777777777777776655421112211 222222355
Q ss_pred HcCCHHHHHHHHHHHHHcC
Q 008265 410 NAGLVEQAMHLFEEMLQAG 428 (572)
Q Consensus 410 ~~g~~~~a~~~~~~m~~~~ 428 (572)
..|+-+.|..=|+..-+.|
T Consensus 127 l~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HhCchHHHHHhHHHHHHhC
Confidence 5677777777777666555
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=90.14 E-value=10 Score=31.86 Aligned_cols=135 Identities=13% Similarity=0.190 Sum_probs=86.0
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccc--cHHHHHHHH
Q 008265 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK--WWQMALKVK 386 (572)
Q Consensus 309 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~ 386 (572)
.+.++.+.+.++.|+...+..+++.+.+.|++.....++.- + +-+|.......+-.+.... -..-|++++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~-------~-Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDML 85 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY-------H-VIPDSKPLACQLLSLGNQYPPAYQLGLDML 85 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh-------c-ccCCcHHHHHHHHHhHccChHHHHHHHHHH
Confidence 45667777889999999999999999999998766665542 2 3344443333333332211 133445555
Q ss_pred HHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhcc
Q 008265 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463 (572)
Q Consensus 387 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 463 (572)
.++.. .+..++..+...|++-+|.++.+..... +......++++-.+.++...=..+|+-..+.+
T Consensus 86 kRL~~--------~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 86 KRLGT--------AYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred HHhhh--------hHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 55442 3567788889999999999998876432 12223556777777777666556655554443
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.42 E-value=16 Score=33.58 Aligned_cols=154 Identities=13% Similarity=0.093 Sum_probs=82.4
Q ss_pred CCHHHHHHHHHH-hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHH
Q 008265 289 LNIYVFNSLMNV-NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367 (572)
Q Consensus 289 p~~~~~~~ll~~-~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 367 (572)
+....+...... -.++..+|..+|+........ +....-.+..+|...|+.+.|..++..+.... -........
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~----~~~~~~~l~ 207 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQA----QDKAAHGLQ 207 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccc----hhhHHHHHH
Confidence 334444443333 336777788877777665433 34555567777788888888888887765311 001111111
Q ss_pred HHHHHHHccccHHHHHHHHHHHHHCCCCC-chhhHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHH
Q 008265 368 TIVKVFADAKWWQMALKVKEDMLSAGVTP-NTITWSSLINACANAGLVEQAMHLFEEMLQA--GCEPNSQCCNILLQACV 444 (572)
Q Consensus 368 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~ 444 (572)
+-|..+.+.....+...+-..... .| |...-..+...+...|+.++|.+.+-.+.++ | .-|...-..++..+.
T Consensus 208 a~i~ll~qaa~~~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~-~~d~~~Rk~lle~f~ 283 (304)
T COG3118 208 AQIELLEQAAATPEIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRG-FEDGEARKTLLELFE 283 (304)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-ccCcHHHHHHHHHHH
Confidence 223333333333333334334333 34 4555556677777778887777766665543 3 224445556666655
Q ss_pred HhCCHhH
Q 008265 445 EACQFDR 451 (572)
Q Consensus 445 ~~g~~~~ 451 (572)
-.|..+-
T Consensus 284 ~~g~~Dp 290 (304)
T COG3118 284 AFGPADP 290 (304)
T ss_pred hcCCCCH
Confidence 5554433
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=89.37 E-value=6.1 Score=33.82 Aligned_cols=102 Identities=17% Similarity=0.029 Sum_probs=70.8
Q ss_pred hhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchh
Q 008265 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (572)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 150 (572)
...+..+..-|++.|+.+.|.+.|..+...-..+.+ ..+++..+++.....+++..+...+.+....--.+...
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~-----~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~- 109 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGH-----KIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDW- 109 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHH-----HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchH-
Confidence 467889999999999999999999999887555442 36778889999999999999988887776652222222
Q ss_pred hhhhhHHHHHHHHHH--hhhhhHHHHHHHHHHH
Q 008265 151 DGSGFKLLKNECQRL--LDSGEVEMFVGLMEVL 181 (572)
Q Consensus 151 ~~~~~~~l~~~~~~~--~~~g~~~~a~~~~~~~ 181 (572)
....-++++.++ ...+++..|-++|-+.
T Consensus 110 ---~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 110 ---ERRNRLKVYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred ---HHHHHHHHHHHHHHHHhchHHHHHHHHHcc
Confidence 111112222222 2357788887777654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.00 E-value=16 Score=32.31 Aligned_cols=198 Identities=16% Similarity=0.071 Sum_probs=93.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHH-HH
Q 008265 223 LFCNFVREFGKKRDLVSALRAYDASKKH-LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL-NIYVFNSL-MN 299 (572)
Q Consensus 223 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~l-l~ 299 (572)
.+......+...+++..+...+...... ........+......+...+++..+...+.........+ ....+... +.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGAL 140 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHH
Confidence 3444455555555555555555554431 122333444455555555555666666666655442222 11222222 22
Q ss_pred HhcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcc
Q 008265 300 VNAHDLKFTLEVYKNMQKLGV--MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFADA 376 (572)
Q Consensus 300 ~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~ 376 (572)
...++.+.+...+.+...... ......+......+...++.+.+...+...... ... ....+..+...+...
T Consensus 141 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 141 YELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL-----NPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh-----CcccchHHHHHhhHHHHHc
Confidence 333555555555555533111 012222333333355566666666666666542 112 244555555556666
Q ss_pred ccHHHHHHHHHHHHHCCCCCc-hhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 377 KWWQMALKVKEDMLSAGVTPN-TITWSSLINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 377 g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
++++.+...+...... .|+ ...+..+...+...+..+++...+.+....
T Consensus 216 ~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 216 GKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred ccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6666666666665554 222 222333333333445556666555555543
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=88.90 E-value=1.5 Score=27.17 Aligned_cols=22 Identities=18% Similarity=0.126 Sum_probs=8.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHH
Q 008265 330 LLKACCLAGNTVLAQEIYGEVK 351 (572)
Q Consensus 330 ll~~~~~~g~~~~a~~~~~~~~ 351 (572)
+..+|...|++++|+++|+++.
T Consensus 7 la~~~~~~G~~~~A~~~~~~~l 28 (44)
T PF13428_consen 7 LARAYRRLGQPDEAERLLRRAL 28 (44)
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 3333333333333333333333
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.78 E-value=15 Score=32.01 Aligned_cols=29 Identities=10% Similarity=-0.031 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008265 257 YICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (572)
Q Consensus 257 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 285 (572)
.+|--+.+.+...|+.++|..+|+-....
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 45666677777777777777777766654
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=88.74 E-value=2.2 Score=26.47 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=13.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 401 WSSLINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 401 ~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
|..+...|.+.|++++|.++|++..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344444555555555555555555443
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=88.71 E-value=27 Score=34.77 Aligned_cols=159 Identities=11% Similarity=0.055 Sum_probs=110.0
Q ss_pred chHHHHHHHHhcCCChHHHHHhhhcC---CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Q 008265 192 DEEFRIVQLCVNKPDVNLAIRYACIV---PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGI 268 (572)
Q Consensus 192 ~~~~~ll~~~~~~g~~~~a~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 268 (572)
...-+++..+..+....-...+-.+| .++...+-.++..|... .-+.-..+|+++.+..+. |+..-..+.. +..
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~-~yE 143 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD-KYE 143 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH-HHH
Confidence 44556777777776666655554443 34457788888999888 667788889988876543 3333344444 444
Q ss_pred cCCHHHHHHHHHHHHhCCCC-----CCHHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHcCChHH
Q 008265 269 CGDYMKSRAIYEDLRSQNVT-----LNIYVFNSLMNVNAHDLKFTLEVYKNMQK-LGVMADMASYNILLKACCLAGNTVL 342 (572)
Q Consensus 269 ~g~~~~a~~~~~~m~~~g~~-----p~~~~~~~ll~~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~ll~~~~~~g~~~~ 342 (572)
.++.+.+..+|.....+=++ .-...|.-+..-...+.+..+.+..++.. .|...-...+.-+-.-|....++.+
T Consensus 144 kik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~e 223 (711)
T COG1747 144 KIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTE 223 (711)
T ss_pred HhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHH
Confidence 58888898888888755322 11346777776666788888888888865 4555556667777788889999999
Q ss_pred HHHHHHHHHHH
Q 008265 343 AQEIYGEVKHL 353 (572)
Q Consensus 343 a~~~~~~~~~~ 353 (572)
|++++..+.++
T Consensus 224 ai~Ilk~il~~ 234 (711)
T COG1747 224 AIRILKHILEH 234 (711)
T ss_pred HHHHHHHHhhh
Confidence 99999977764
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=88.65 E-value=13 Score=30.91 Aligned_cols=119 Identities=15% Similarity=0.188 Sum_probs=65.1
Q ss_pred HHHHHHHHHH---HHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHccccHHHHHHHHHHHHHCCCCCchh
Q 008265 324 MASYNILLKA---CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY-STIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399 (572)
Q Consensus 324 ~~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 399 (572)
..+.+.|+.. -.+.++.+++..++..+.-+ .|..... ..-...+...|+|++|+++|+++.+.+ |...
T Consensus 7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p 78 (160)
T PF09613_consen 7 DEIVGGLIEVLSVALRLGDPDDAEALLDALRVL------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFP 78 (160)
T ss_pred HHHHHHHHHHHHHHHccCChHHHHHHHHHHHHh------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCCh
Confidence 3444455443 34678899999999999874 4554322 222334668899999999999987763 3333
Q ss_pred hHHHHHHHHHHcCCHHHHHHH-HHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHH
Q 008265 400 TWSSLINACANAGLVEQAMHL-FEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454 (572)
Q Consensus 400 ~~~~li~~~~~~g~~~~a~~~-~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 454 (572)
.-..|+..|....+ +..++. -+++.+.+-.|+. ..++..+....+...|..
T Consensus 79 ~~kALlA~CL~~~~-D~~Wr~~A~evle~~~d~~a---~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 79 YAKALLALCLYALG-DPSWRRYADEVLESGADPDA---RALVRALLARADLEPAHE 130 (160)
T ss_pred HHHHHHHHHHHHcC-ChHHHHHHHHHHhcCCChHH---HHHHHHHHHhccccchhh
Confidence 23334443333222 233333 3345555433332 234555555555544444
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=88.57 E-value=1.2 Score=26.27 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=12.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 008265 224 FCNFVREFGKKRDLVSALRAYDA 246 (572)
Q Consensus 224 ~~~li~~~~~~g~~~~a~~~~~~ 246 (572)
++.|...|.+.|++++|.++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44555555555555555555555
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=88.28 E-value=28 Score=34.43 Aligned_cols=114 Identities=11% Similarity=0.089 Sum_probs=78.6
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHhcCChHHHHHHH
Q 008265 234 KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN-VTLNIYVFNSLMNVNAHDLKFTLEVY 312 (572)
Q Consensus 234 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~a~~~~ 312 (572)
..+..+|.+.-+...+.+. -|......+-.+..-.|+++.|...|++....+ -.++...|..++.+++|+.++|.+.+
T Consensus 317 ~~~~~~a~~~A~rAveld~-~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 317 ELAAQKALELLDYVSDITT-VDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred hHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3456677777777777643 367777777777788888999999999988763 12345678888889999999999999
Q ss_pred HHHHHcCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008265 313 KNMQKLGVM-ADMASYNILLKACCLAGNTVLAQEIYGE 349 (572)
Q Consensus 313 ~~m~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 349 (572)
++..+..+. .........++.|+..+ .++++++|-+
T Consensus 396 ~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 396 DKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred HHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHHhh
Confidence 997664322 22233344455666544 6777777644
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.71 E-value=12 Score=37.96 Aligned_cols=97 Identities=13% Similarity=0.122 Sum_probs=60.0
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHH
Q 008265 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382 (572)
Q Consensus 303 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 382 (572)
|+++.|.++..+.. +..-|..|.++....|++..|.+.|..... |..|+-.+...|+-+..
T Consensus 651 grl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-------------~~~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 651 GRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD-------------LGSLLLLYTSSGNAEGL 711 (794)
T ss_pred CcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc-------------hhhhhhhhhhcCChhHH
Confidence 45555555444432 455677777888888888888777765542 34555566666766655
Q ss_pred HHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 008265 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424 (572)
Q Consensus 383 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 424 (572)
..+-....+.|.. |...-+|...|+++++.+++..-
T Consensus 712 ~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 712 AVLASLAKKQGKN------NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHHhhccc------chHHHHHHHcCCHHHHHHHHHhc
Confidence 5555555555432 44455666778888777776544
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.48 E-value=21 Score=31.93 Aligned_cols=121 Identities=12% Similarity=0.033 Sum_probs=68.0
Q ss_pred HcCChHHHHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHC----CCCCch-hhHHHHHHHHH
Q 008265 336 LAGNTVLAQEIYGEVKHLEAKG-VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA----GVTPNT-ITWSSLINACA 409 (572)
Q Consensus 336 ~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~~-~~~~~li~~~~ 409 (572)
+.-++++|+++|.+....-..+ ...--...+..+-+.+.+...+++|-..+.+-... .-.++. ..|-..|-.+.
T Consensus 122 env~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L 201 (308)
T KOG1585|consen 122 ENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYL 201 (308)
T ss_pred hcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHh
Confidence 3445666777766655432221 01111224455556667777777665544432211 111222 23455555666
Q ss_pred HcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHhCCHhHHHHHHH
Q 008265 410 NAGLVEQAMHLFEEMLQAG---CEPNSQCCNILLQACVEACQFDRAFRLFR 457 (572)
Q Consensus 410 ~~g~~~~a~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 457 (572)
-..++..|..+++.-.+.+ -.-+..+...|+.+| ..|+.+++.+++.
T Consensus 202 ~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 202 YAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred hHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 6778889999988854422 133567788888887 5788888777653
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=87.20 E-value=1.6 Score=25.65 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008265 258 ICRTIIDVCGICGDYMKSRAIYEDLR 283 (572)
Q Consensus 258 ~~~~ll~~~~~~g~~~~a~~~~~~m~ 283 (572)
+|+.|-..|.+.|++++|.++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47788999999999999999999854
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=86.01 E-value=23 Score=35.28 Aligned_cols=18 Identities=22% Similarity=0.215 Sum_probs=12.5
Q ss_pred cCChHHHHHHHHHHHHHH
Q 008265 337 AGNTVLAQEIYGEVKHLE 354 (572)
Q Consensus 337 ~g~~~~a~~~~~~~~~~~ 354 (572)
+....+++++|++..+..
T Consensus 213 A~Ti~Eae~l~rqAvkAg 230 (539)
T PF04184_consen 213 ASTIVEAEELLRQAVKAG 230 (539)
T ss_pred ccCHHHHHHHHHHHHHHH
Confidence 445677888888777644
|
The molecular function of this protein is uncertain. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=86.01 E-value=31 Score=32.46 Aligned_cols=130 Identities=14% Similarity=0.241 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHH--hc--C----ChHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHcCCh
Q 008265 272 YMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NA--H----DLKFTLEVYKNMQKLGV---MADMASYNILLKACCLAGNT 340 (572)
Q Consensus 272 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~--~~--~----~~~~a~~~~~~m~~~~~---~~~~~~~~~ll~~~~~~g~~ 340 (572)
+++.+.+++.|.+.|+.-+.++|-+.... .. . ....+..+|+.|++... .++...+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45566777778888877777666553332 21 1 35667888888887653 3444556555544 33333
Q ss_pred ----HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc-c--cHHHHHHHHHHHHHCCCCCchhhHHHHHH
Q 008265 341 ----VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA-K--WWQMALKVKEDMLSAGVTPNTITWSSLIN 406 (572)
Q Consensus 341 ----~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g--~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 406 (572)
+.++..|+.+.. .|..+-|..-+.+-+-++... . ...++.++++.+.+.|+++....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~---~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLAD---AGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHH---hCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 456667777665 343333443333333333322 1 14578888999999998887777665443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=85.79 E-value=33 Score=32.61 Aligned_cols=136 Identities=14% Similarity=0.052 Sum_probs=61.5
Q ss_pred hHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhc-CCCCcchh
Q 008265 72 DYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL-GVAPLELF 150 (572)
Q Consensus 72 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~ 150 (572)
.+|..+..+.++.|++.+++..--.-++.-.+. -.+..-..++.++.+++-+.-++.+++.+-+.-... |..|...
T Consensus 44 ~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~--~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~- 120 (518)
T KOG1941|consen 44 RVLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL--EDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQL- 120 (518)
T ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccc-
Confidence 445555566666666665543322222111110 112222455555666555555666666555443332 3233211
Q ss_pred hhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCc----ccchHHHHHHHHhcCCChHHHHHh
Q 008265 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVK----ELDEEFRIVQLCVNKPDVNLAIRY 213 (572)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~ll~~~~~~g~~~~a~~~ 213 (572)
-....-++-.+..+ .+.++++++.|+...+.--... +...+-.|...|.+..++++|.-+
T Consensus 121 ~gq~~l~~~~Ahlg---ls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f 184 (518)
T KOG1941|consen 121 GGQVSLSMGNAHLG---LSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFF 184 (518)
T ss_pred cchhhhhHHHHhhh---HHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhh
Confidence 11111222233333 4778888888877654322211 122344555555555565555443
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=85.67 E-value=0.69 Score=26.87 Aligned_cols=32 Identities=16% Similarity=0.269 Sum_probs=27.0
Q ss_pred hhhcccCCchhhhHHHHHHHhHhhcCChhHHHH
Q 008265 60 LSTVRRDLSSRNDYYADMASKLAKDGRLEEFAM 92 (572)
Q Consensus 60 ~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~ 92 (572)
.+.++.+|+. ..+|+.+...+...|++++|++
T Consensus 3 ~kAie~~P~n-~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 3 KKAIELNPNN-AEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred HHHHHHCCCC-HHHHHHHHHHHHHCcCHHhhcC
Confidence 3566777887 8999999999999999999863
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=85.29 E-value=19 Score=29.43 Aligned_cols=105 Identities=11% Similarity=-0.005 Sum_probs=61.6
Q ss_pred hhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHH
Q 008265 119 GIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIV 198 (572)
Q Consensus 119 ~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll 198 (572)
++..-...++++++..+++.|.-. .|+.. -..++..++. ...|+|++|+.+|+++.+.+... .+..-+
T Consensus 16 ~~~~aL~~~d~~D~e~lLdALrvL--rP~~~-e~d~~dg~l~-----i~rg~w~eA~rvlr~l~~~~~~~----p~~kAL 83 (153)
T TIGR02561 16 VLMYALRSADPYDAQAMLDALRVL--RPNLK-ELDMFDGWLL-----IARGNYDEAARILRELLSSAGAP----PYGKAL 83 (153)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh--CCCcc-ccchhHHHHH-----HHcCCHHHHHHHHHhhhccCCCc----hHHHHH
Confidence 344445588999999999998765 55543 2235555543 34799999999999998764221 122222
Q ss_pred HHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008265 199 QLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASK 248 (572)
Q Consensus 199 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 248 (572)
.++| ..-..+..|..........+...++..+.+.+.
T Consensus 84 ~A~C-------------L~al~Dp~Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 84 LALC-------------LNAKGDAEWHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred HHHH-------------HHhcCChHHHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 2222 111112345555555555666666666666555
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.84 E-value=6.4 Score=39.71 Aligned_cols=153 Identities=10% Similarity=0.029 Sum_probs=95.9
Q ss_pred HhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHH
Q 008265 81 LAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKN 160 (572)
Q Consensus 81 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~ 160 (572)
+.-.|+++.|..++..+.+. ....+..-+-++|..++|+++- ..|+. -|.+.++
T Consensus 596 ~vmrrd~~~a~~vLp~I~k~--------------~rt~va~Fle~~g~~e~AL~~s-------~D~d~-----rFelal~ 649 (794)
T KOG0276|consen 596 LVLRRDLEVADGVLPTIPKE--------------IRTKVAHFLESQGMKEQALELS-------TDPDQ-----RFELALK 649 (794)
T ss_pred HhhhccccccccccccCchh--------------hhhhHHhHhhhccchHhhhhcC-------CChhh-----hhhhhhh
Confidence 34467777777766555422 1222333444666666665543 22332 4555543
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHH
Q 008265 161 ECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSA 240 (572)
Q Consensus 161 ~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 240 (572)
.|+++.|.++..+. ++..-|..|.++....+++..|.+.|... .-|..|+-.+...|+-+..
T Consensus 650 -------lgrl~iA~~la~e~-------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a----~d~~~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 650 -------LGRLDIAFDLAVEA-------NSEVKWRQLGDAALSAGELPLASECFLRA----RDLGSLLLLYTSSGNAEGL 711 (794)
T ss_pred -------cCcHHHHHHHHHhh-------cchHHHHHHHHHHhhcccchhHHHHHHhh----cchhhhhhhhhhcCChhHH
Confidence 69999998876654 33456888888888888888888888664 3466677777777777765
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008265 241 LRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283 (572)
Q Consensus 241 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 283 (572)
..+-....+.|. .|...-+|...|+++++.+++.+-.
T Consensus 712 ~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 712 AVLASLAKKQGK------NNLAFLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred HHHHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHhcC
Confidence 555555555442 2334445667788888888776553
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=84.56 E-value=1.4 Score=25.61 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=15.0
Q ss_pred CCcccchHHHHHHHHhcCCChHHHH
Q 008265 187 PVKELDEEFRIVQLCVNKPDVNLAI 211 (572)
Q Consensus 187 ~~~~~~~~~~ll~~~~~~g~~~~a~ 211 (572)
.|++...|+.+...|...|+.++|+
T Consensus 9 ~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 4666666666666666666665553
|
|
| >KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.01 E-value=43 Score=32.43 Aligned_cols=160 Identities=13% Similarity=0.104 Sum_probs=86.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------CCCC
Q 008265 222 ILFCNFVREFGKKRDLVSALRAYDASKKHL--SSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN---------VTLN 290 (572)
Q Consensus 222 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g---------~~p~ 290 (572)
..+.-+...|..+|+++.|++.|.+.+... .+-.+..|-.+|..-...|+|.++..+..+..+.- +.+-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 456668888999999999999998865542 12234566667777778899888888877776541 2222
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHHcCChHHHHHH-----HHHHHHHHHhCCC
Q 008265 291 IYVFNSLMNVNAHDLKFTLEVYKNMQKLG------VMADMASYNILLKACCLAGNTVLAQEI-----YGEVKHLEAKGVL 359 (572)
Q Consensus 291 ~~~~~~ll~~~~~~~~~a~~~~~~m~~~~------~~~~~~~~~~ll~~~~~~g~~~~a~~~-----~~~~~~~~~~~~~ 359 (572)
...+..+.....+++..|...|-...... +.|...+....+.+++-.++-+--..+ |+...
T Consensus 231 l~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~fl-------- 302 (466)
T KOG0686|consen 231 LKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFL-------- 302 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHH--------
Confidence 23333333333345555544443222111 223333333334444433333222222 22222
Q ss_pred CCCHHHHHHHHHHHHccccHHHHHHHHHHHHH
Q 008265 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391 (572)
Q Consensus 360 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 391 (572)
......+..+..-| .+++...++++++++.
T Consensus 303 el~Pqlr~il~~fy--~sky~~cl~~L~~~k~ 332 (466)
T KOG0686|consen 303 ELEPQLREILFKFY--SSKYASCLELLREIKP 332 (466)
T ss_pred hcChHHHHHHHHHh--hhhHHHHHHHHHHhcc
Confidence 22334444444444 3567888888888764
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.00 E-value=33 Score=31.09 Aligned_cols=56 Identities=18% Similarity=0.208 Sum_probs=46.6
Q ss_pred hcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhc
Q 008265 83 KDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL 142 (572)
Q Consensus 83 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~ 142 (572)
+...+++|+.-|+...+...+-..|. +.++-.++..+.+.+++++..+.|.+|...
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWG----FKALKQmiKI~f~l~~~~eMm~~Y~qlLTY 94 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWG----FKALKQMIKINFRLGNYKEMMERYKQLLTY 94 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhH----HHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 34578999999999998866666676 778889999999999999999999888654
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.57 E-value=4 Score=37.51 Aligned_cols=124 Identities=13% Similarity=0.204 Sum_probs=65.9
Q ss_pred HHHHHHccccHHHHHHHHHHHHHC----------CCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCCHHH
Q 008265 369 IVKVFADAKWWQMALKVKEDMLSA----------GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA---GCEPNSQC 435 (572)
Q Consensus 369 li~~~~~~g~~~~a~~~~~~m~~~----------g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~ 435 (572)
|.++|.....|+.-......+... |......+...++..-....++++++.++-.++.. -..|+...
T Consensus 25 LsS~fs~e~~w~~r~~~~~kla~~g~~~~kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~ 104 (418)
T KOG4570|consen 25 LSSAFSDEHKWEAREKEHYKLADLGSLMDKKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI 104 (418)
T ss_pred hHHHhhhhhhhhHHHHHHHHHhcccccchhhhhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH
Confidence 445566555555433333233222 33445555666666666667778887777777642 12222211
Q ss_pred HHHHHHHHHHhCCHhHHHHHHHHhhhcccccccccccCCchHHHHhhhhhccccccCCCCcccCCccchhhhhcCCCCCH
Q 008265 436 CNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTT 515 (572)
Q Consensus 436 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 515 (572)
+ .+++-| -.-+.++++-++..=. ..|+-||-
T Consensus 105 ~-~~irll-lky~pq~~i~~l~npI-----------------------------------------------qYGiF~dq 135 (418)
T KOG4570|consen 105 H-TWIRLL-LKYDPQKAIYTLVNPI-----------------------------------------------QYGIFPDQ 135 (418)
T ss_pred H-HHHHHH-HccChHHHHHHHhCcc-----------------------------------------------hhccccch
Confidence 1 122222 2234455555544322 33578888
Q ss_pred HHHHHHHHHHhh--cHHHHHHHHHHHHh
Q 008265 516 TTYNILMKACCT--DYYRVKALMNEMRT 541 (572)
Q Consensus 516 ~~~~~ll~a~~~--~~~~a~~~~~~m~~ 541 (572)
++++.+|+.+.+ +..+|..+.-.|..
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 888888888887 45555555544443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=83.54 E-value=50 Score=32.82 Aligned_cols=129 Identities=12% Similarity=0.077 Sum_probs=72.2
Q ss_pred HHH--HHHHHHHHhcC-----CHHHHHHHHHHHH-hCCCCCCH-HHHHHHHHH-----hcC------ChHHHHHHHHHHH
Q 008265 257 YIC--RTIIDVCGICG-----DYMKSRAIYEDLR-SQNVTLNI-YVFNSLMNV-----NAH------DLKFTLEVYKNMQ 316 (572)
Q Consensus 257 ~~~--~~ll~~~~~~g-----~~~~a~~~~~~m~-~~g~~p~~-~~~~~ll~~-----~~~------~~~~a~~~~~~m~ 316 (572)
..| ...+++..... ..+.|+.+|.+.. .+.+.|+- ..|..+-.+ ..| +..+|.++-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 445 55566554422 3567888888877 22345552 223222222 111 2345556666666
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHccccHHHHHHHHHHHHHC
Q 008265 317 KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF-TYSTIVKVFADAKWWQMALKVKEDMLSA 392 (572)
Q Consensus 317 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~ 392 (572)
+.+.. |......+..+....++++.|..+|++... +.||.. +|.......+-.|+.++|.+.+++..+.
T Consensus 332 eld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~------L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 332 DITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKI------HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred hcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhh------cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 65533 666666666666666777777777777776 345433 4444444445567777777777775544
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=83.37 E-value=13 Score=27.68 Aligned_cols=46 Identities=17% Similarity=0.192 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008265 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (572)
Q Consensus 307 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 352 (572)
++.+-++.+......|++....+.+++|-+.+|+..|.++|+-++.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4445555556666778888888888888888888888888887764
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=83.36 E-value=12 Score=27.91 Aligned_cols=45 Identities=16% Similarity=0.287 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhh
Q 008265 416 QAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (572)
Q Consensus 416 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (572)
++.+-++.+....+-|+..+..+.++||-+.+++..|.++|+.++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444445555555566666666666666666666666666666554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=82.71 E-value=0.32 Score=40.04 Aligned_cols=86 Identities=12% Similarity=0.170 Sum_probs=59.8
Q ss_pred HHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC
Q 008265 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448 (572)
Q Consensus 369 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 448 (572)
+|..+.+.+.+......++.+...+..-+....+.++..|++.++.++..++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 45666677778888888888887665566778888888888887777777777611 11223456777788888
Q ss_pred HhHHHHHHHHhhh
Q 008265 449 FDRAFRLFRSWTL 461 (572)
Q Consensus 449 ~~~A~~~~~~m~~ 461 (572)
+++|.-++.++..
T Consensus 86 ~~~a~~Ly~~~~~ 98 (143)
T PF00637_consen 86 YEEAVYLYSKLGN 98 (143)
T ss_dssp HHHHHHHHHCCTT
T ss_pred HHHHHHHHHHccc
Confidence 8888888877644
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=82.69 E-value=4 Score=23.29 Aligned_cols=27 Identities=26% Similarity=0.186 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008265 326 SYNILLKACCLAGNTVLAQEIYGEVKH 352 (572)
Q Consensus 326 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 352 (572)
+|..+..+|...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455556666666666666666666655
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.64 E-value=51 Score=34.35 Aligned_cols=17 Identities=12% Similarity=-0.039 Sum_probs=9.7
Q ss_pred HcCChHHHHHHHHHHHH
Q 008265 336 LAGNTVLAQEIYGEVKH 352 (572)
Q Consensus 336 ~~g~~~~a~~~~~~~~~ 352 (572)
...|.+.|...|+.+..
T Consensus 261 ~~~d~e~a~~~l~~aa~ 277 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAE 277 (552)
T ss_pred ccccHHHHHHHHHHHHH
Confidence 34456666666665554
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=82.55 E-value=31 Score=29.73 Aligned_cols=90 Identities=18% Similarity=0.069 Sum_probs=58.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHH-----HHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHH
Q 008265 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST-----IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404 (572)
Q Consensus 330 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 404 (572)
+...+...|++++|+..++.... .|....+.. |.+.....|.+|+|+.+++...+.+. .......-
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~-------~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elr 165 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALA-------QTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELR 165 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHc-------cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHh
Confidence 34567788888888888887764 222233333 33455667888888888887765533 22223334
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcC
Q 008265 405 INACANAGLVEQAMHLFEEMLQAG 428 (572)
Q Consensus 405 i~~~~~~g~~~~a~~~~~~m~~~~ 428 (572)
-+.+...|+-++|..-|....+.+
T Consensus 166 GDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 166 GDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred hhHHHHcCchHHHHHHHHHHHHcc
Confidence 556777888888888888877664
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=82.42 E-value=57 Score=32.67 Aligned_cols=82 Identities=6% Similarity=0.011 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCC-chhhHH
Q 008265 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP-NTITWS 402 (572)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~ 402 (572)
..+-..+..++-+.|+.++|++.|+++.+.. . ...+..+...|+.++...+.+.++..++.+..+..... -..+|+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~--p-~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YT 335 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEF--P-NLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYT 335 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhC--C-ccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHH
Confidence 3333455666678899999999999997521 0 11233477889999999999999999999876543222 235566
Q ss_pred HHHHHH
Q 008265 403 SLINAC 408 (572)
Q Consensus 403 ~li~~~ 408 (572)
..+--+
T Consensus 336 aALLka 341 (539)
T PF04184_consen 336 AALLKA 341 (539)
T ss_pred HHHHHH
Confidence 655433
|
The molecular function of this protein is uncertain. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=81.58 E-value=14 Score=32.07 Aligned_cols=69 Identities=10% Similarity=-0.047 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhc-CChHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHcCChHH
Q 008265 274 KSRAIYEDLRSQNVTLNIYVFNSLMNVNA-HDLKFTLEVYKNMQKL---GVMADMASYNILLKACCLAGNTVL 342 (572)
Q Consensus 274 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~~~~a~~~~~~m~~~---~~~~~~~~~~~ll~~~~~~g~~~~ 342 (572)
.|.+.|-.+...+.--++...-.+-..|. .+.++++.++....+. +-.+|+..+..|...+.+.|+++.
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 34444444444433333333333333332 2344444444433321 113344444444444444444433
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.44 E-value=76 Score=33.47 Aligned_cols=60 Identities=12% Similarity=0.109 Sum_probs=45.2
Q ss_pred CchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHh
Q 008265 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (572)
Q Consensus 396 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (572)
...-+.+--+.-+...|+..+|.++-.+.+ -||...|-.=+.+++..++|++-+++-+.+
T Consensus 682 f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAksk 741 (829)
T KOG2280|consen 682 FVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSK 741 (829)
T ss_pred cccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhcc
Confidence 344455666667777888888888887776 678888888888899999988877765543
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.42 E-value=39 Score=30.08 Aligned_cols=18 Identities=11% Similarity=0.298 Sum_probs=10.0
Q ss_pred HHhCCHhHHHHHHHHhhh
Q 008265 444 VEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 444 ~~~g~~~~A~~~~~~m~~ 461 (572)
+..+++.+|.++|+++..
T Consensus 165 a~leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVAR 182 (288)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555666666655544
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=81.11 E-value=46 Score=30.75 Aligned_cols=129 Identities=9% Similarity=0.031 Sum_probs=79.8
Q ss_pred cCCChHHHHHhhhc------CCCchhHHHHHHHHHHh-cC-CHHHHHHHHHHHHh-cCCCCcHHHHHHHHHHHHhcCCHH
Q 008265 203 NKPDVNLAIRYACI------VPRADILFCNFVREFGK-KR-DLVSALRAYDASKK-HLSSPNMYICRTIIDVCGICGDYM 273 (572)
Q Consensus 203 ~~g~~~~a~~~~~~------~~~~~~~~~~li~~~~~-~g-~~~~a~~~~~~m~~-~~~~~~~~~~~~ll~~~~~~g~~~ 273 (572)
++..+.+|+++|+. +..++.+...+++.... .+ ....-.++.+.+.. .|..++..+...+|..+++.++|.
T Consensus 140 ~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~ 219 (292)
T PF13929_consen 140 RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWN 219 (292)
T ss_pred hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHH
Confidence 44556677777773 33345666677776665 22 23333344444433 345677778888899999999999
Q ss_pred HHHHHHHHHHhC-CCCCCHHHHHHHHHHhc--CChHHHHHHHHH-----HHHcCCCCCHHHHHHHH
Q 008265 274 KSRAIYEDLRSQ-NVTLNIYVFNSLMNVNA--HDLKFTLEVYKN-----MQKLGVMADMASYNILL 331 (572)
Q Consensus 274 ~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~--~~~~~a~~~~~~-----m~~~~~~~~~~~~~~ll 331 (572)
+.+++++..... +..-|...|..+|.... |+..-...+.++ +++.|+..+...-..+-
T Consensus 220 kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~ 285 (292)
T PF13929_consen 220 KLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLS 285 (292)
T ss_pred HHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHH
Confidence 998888887655 56667888888888644 565554444432 23344555554444443
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=80.41 E-value=12 Score=28.11 Aligned_cols=46 Identities=17% Similarity=0.181 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008265 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (572)
Q Consensus 307 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 352 (572)
+..+-++.+....+.|++....+.+.+|-+.+++..|.++|+-++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444455555566777788888888888888888888888877765
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.05 E-value=41 Score=29.54 Aligned_cols=78 Identities=13% Similarity=0.043 Sum_probs=42.1
Q ss_pred CCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008265 204 KPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283 (572)
Q Consensus 204 ~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 283 (572)
..++..++.+.-.| ..+||-|.-.+...|+++.|.+.|+...+....-+-...|.-|.. ---|++.-|.+-|-..-
T Consensus 85 R~DftQaLai~P~m---~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~-YY~gR~~LAq~d~~~fY 160 (297)
T COG4785 85 RNDFSQALAIRPDM---PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL-YYGGRYKLAQDDLLAFY 160 (297)
T ss_pred hhhhhhhhhcCCCc---HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee-eecCchHhhHHHHHHHH
Confidence 34455555544333 357777777777777777777777777664332222222222222 22366666665555544
Q ss_pred hC
Q 008265 284 SQ 285 (572)
Q Consensus 284 ~~ 285 (572)
+.
T Consensus 161 Q~ 162 (297)
T COG4785 161 QD 162 (297)
T ss_pred hc
Confidence 33
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 67.6 bits (164), Expect = 6e-12
Identities = 80/514 (15%), Positives = 169/514 (32%), Gaps = 116/514 (22%)
Query: 16 VATQTRLYNHRNKPNKHPVTKLFPL----ASSSSLSSIP--TVH----SSQTALLSTVRR 65
+ + RLYN K+ V++L P + L + S +T + V
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172
Query: 66 DLS--SRND---YYADMASKLAKDGRLE---EFAMIVESVVVSEGNVSKFASMLSLEMVA 117
+ D ++ ++ + + + LE + ++ S + S L + +
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS-NIKLRIHSIQ 231
Query: 118 SGIVKSIREGR-IDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLL---DSGEVEM 173
+ + + ++ +C++ VL + F+ S C+ LL +
Sbjct: 232 AELRRLLKSKPYENCLL-VLLNVQNAKA--WNAFNLS--------CKILLTTRFKQVTDF 280
Query: 174 FVGLME---VLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYAC-IVPRADILFCNFVR 229
L+ + + DE ++ ++ +L R PR + +R
Sbjct: 281 LSAATTTHISLDHHSMTLTP-DEVKSLLLKYLDCRPQDLP-REVLTTNPRRLSIIAESIR 338
Query: 230 EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL----RSQ 285
+ D + + K TII+ + + R +++ L S
Sbjct: 339 DGLATWD---NWKHVNCDKLT----------TIIESSLNVLEPAEYRKMFDRLSVFPPSA 385
Query: 286 NV---TLNIY-----------VFNSLMN---VNAHDLKFTLEVY----KNMQKLGVMADM 324
++ L++ V N L V + T+ + + KL +
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445
Query: 325 -----ASYNILLKACCLAGNTVLAQE----IYGEVK-HL-EAKGVLKLDVFTYSTIVKVF 373
YNI + ++ Y + HL + ++ +F VF
Sbjct: 446 HRSIVDHYNIPKTFDS---DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR-----MVF 497
Query: 374 ADAKWWQMALKVKEDMLS---AGVTPNTIT----WSSLINACANAGLVEQAMHLFEEMLQ 426
D ++ + K++ D + +G NT+ + I C N E+ ++ + L
Sbjct: 498 LDFRF--LEQKIRHDSTAWNASGSILNTLQQLKFYKPYI--CDNDPKYERLVNAILDFLP 553
Query: 427 AGCEPN---SQCCNIL---LQACVEACQFDRAFR 454
E N S+ ++L L A EA F+ A +
Sbjct: 554 -KIEENLICSKYTDLLRIALMAEDEAI-FEEAHK 585
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.8 bits (136), Expect = 1e-08
Identities = 61/362 (16%), Positives = 114/362 (31%), Gaps = 71/362 (19%)
Query: 221 DILFCN---FVREFGKKRDLVSALRAYDASK--KH-LSSPNMYICRTIIDVCGICGDYMK 274
DIL FV F K D+ ++ + + H + S +
Sbjct: 20 DILSVFEDAFVDNFDCK-DVQDMPKSILSKEEIDHIIMSKD---------------AVSG 63
Query: 275 SRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334
+ ++ L S+ + + F + V + KF + K Q+ Y
Sbjct: 64 TLRLFWTLLSKQEEM-VQKF--VEEVLRINYKFLMSPIKTEQR-QPSMMTRMYIEQRDRL 119
Query: 335 CLAGNTVLAQ-EIYGEVKHLEAKGVL-KLDVFTYSTIVKVFADA---KWWQMALKVKEDM 389
N V A+ + +L+ + L +L V + K W +AL V
Sbjct: 120 Y-NDNQVFAKYNVSRLQPYLKLRQALLELRPAKN---VLIDGVLGSGKTW-VALDVCLSY 174
Query: 390 LSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQF 449
I W +L N + ++E L ++ + NI L+ + + Q
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR--IHSIQ- 231
Query: 450 DRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEH--------------KDKQSITNTPN 495
RL +S + L + N + + K +T+ +
Sbjct: 232 AELRRLLKSKPYENCLLVL--------LNVQNAKAWNAFNLSCKILLTTRFK-QVTDFLS 282
Query: 496 FVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILI 555
+H S + P ++L+K D R + L E+ T +P +S +I
Sbjct: 283 AATTTHISLDHHSMTLTPDEVK-SLLLK--YLD-CRPQDLPREVLTT--NPRRLS---II 333
Query: 556 DA 557
Sbjct: 334 AE 335
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 1e-05
Identities = 42/341 (12%), Positives = 102/341 (29%), Gaps = 103/341 (30%)
Query: 2 RVVFGSSSSSSSAIVATQTRLY---NHRNKPNKHPVTK-LFPLASSSSLSSIP----TVH 53
+++ + + ++ T + +H + K L +P T +
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 54 SSQTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSL 113
+ ++++ RD + D + K ++ I+ES SL
Sbjct: 327 PRRLSIIAESIRDGLATWDNW--------KHVNCDKLTTIIES---------------SL 363
Query: 114 EMVASGIVKSIREGRIDCVV---------GVLKKL-NELGVAPLELFDGSGFKLLKNECQ 163
++ + + + V +L + ++ + + + N+
Sbjct: 364 NVLEPAEYRKMFD---RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV--------NKLH 412
Query: 164 R--LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRY---ACIVP 218
+ L++ E + + + E + +L+ E+ + + V+ N+ + I P
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELK---VKLENEYALHRSIVDH--YNIPKTFDSDDLIPP 467
Query: 219 RADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI 278
D F + + + HL + R +
Sbjct: 468 YLDQYFYSHI--------------GH-----HLKNIEHP------------ERMTLFRMV 496
Query: 279 YEDLR--SQ---NVTLNIYVFNSLMNVNAHDLKFTLEVYKN 314
+ D R Q + + S++N LKF YK
Sbjct: 497 FLDFRFLEQKIRHDSTAWNASGSILNT-LQQLKF----YKP 532
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 58.3 bits (139), Expect = 6e-09
Identities = 18/202 (8%), Positives = 46/202 (22%), Gaps = 13/202 (6%)
Query: 350 VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV---KEDMLSAGVTPNTITWSSLIN 406
++ L K +A + +++++
Sbjct: 114 PSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVML 173
Query: 407 ACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQV 466
A G ++ +++ + AG P+ LQ Q Q+
Sbjct: 174 GWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERC------LEQM 227
Query: 467 ALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC 526
+ + +D+ ++ + V + P T +L
Sbjct: 228 SQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQL----PPPVNTSKLLRDVYA 283
Query: 527 TDYYRVKALMNEMRTVGLSPNH 548
D ++
Sbjct: 284 KDGRVSYPKLHLPLKTLQCLFE 305
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 54.1 bits (128), Expect = 1e-07
Identities = 26/180 (14%), Positives = 55/180 (30%), Gaps = 8/180 (4%)
Query: 260 RTIIDVCGICGDYMKSRAI---YEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKN 314
C + + + + R + L + ++N++M A F + V
Sbjct: 131 LAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFM 190
Query: 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374
++ G+ D+ SY L+ E ++ + +G+ +F + ++
Sbjct: 191 VKDAGLTPDLLSYAAALQCMGRQDQDAGTIERC--LEQMSQEGLKLQALF-TAVLLSEED 247
Query: 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
A + KVK P + S L+ L + C Q
Sbjct: 248 RATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQ 307
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 53.7 bits (127), Expect = 1e-07
Identities = 25/192 (13%), Positives = 50/192 (26%), Gaps = 46/192 (23%)
Query: 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439
QMA +++ A +P + L+ ++ + QA Q
Sbjct: 74 QMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAF 133
Query: 440 LQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPN 499
+ C+ Q A L K K
Sbjct: 134 FKCCLLTDQLPLAHHLL--------------------VVHHGQRQKRKL----------- 162
Query: 500 SHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDA 557
T YN +M + + ++ ++ GL+P+ +S+ +
Sbjct: 163 -------------LTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209
Query: 558 CGGSGNVEGALQ 569
G G ++
Sbjct: 210 MGRQDQDAGTIE 221
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 572 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.98 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.94 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.93 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.87 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.86 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.86 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.85 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.83 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.82 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.79 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.78 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.77 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.77 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.74 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.72 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.71 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.7 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.69 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.68 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.68 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.67 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.66 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.66 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.66 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.65 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.64 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.6 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.59 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.58 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.56 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.55 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.53 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.53 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.52 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.51 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.48 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.45 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.43 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.42 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.41 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.41 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.4 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.4 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.4 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.4 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.38 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.37 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.36 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.35 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.35 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.34 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.34 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.33 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.32 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.31 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.3 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.29 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.26 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.25 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.24 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.23 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.22 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.22 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.22 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.21 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.2 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.2 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.2 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.19 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.18 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.17 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.13 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.11 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.06 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.06 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.05 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.03 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.02 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.0 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.99 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.93 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.93 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.9 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.89 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.89 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.87 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.82 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.76 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.69 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.68 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.68 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.67 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.59 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.57 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.57 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.55 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.55 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.54 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.54 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.53 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.51 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.51 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.5 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.49 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.48 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.46 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.44 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.43 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.42 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.41 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.41 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.39 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.36 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.36 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.36 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.35 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.34 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.31 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.3 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.29 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.29 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.28 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.28 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.28 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.25 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.25 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.24 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.23 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.22 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.21 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.2 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.19 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.17 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.16 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.15 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.11 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.11 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.09 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.09 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.09 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.07 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.07 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.06 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.04 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.99 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.99 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.99 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 97.99 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.99 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.98 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.98 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 97.96 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.96 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 97.96 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 97.95 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 97.95 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 97.94 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.93 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 97.93 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 97.92 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.92 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.92 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.91 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.91 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 97.88 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.84 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.83 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.82 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.81 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.79 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.78 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.75 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.73 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.7 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.68 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.67 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.66 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.66 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.61 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.6 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.58 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.57 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.43 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.42 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.41 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.39 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.33 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.32 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.22 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.15 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.12 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.04 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 96.99 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.95 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.94 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.94 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 96.93 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 96.91 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.89 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 96.82 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.73 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.68 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.68 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.67 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.54 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.29 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.23 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.22 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.18 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.16 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.14 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.08 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.91 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.8 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.54 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.06 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.94 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.74 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 94.6 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 94.39 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.19 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 93.86 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 93.61 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 93.55 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 93.27 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 93.16 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 92.93 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 92.86 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 92.74 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 91.95 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 91.92 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 91.0 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 89.72 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 88.95 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 88.72 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 87.05 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 85.29 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 84.59 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 81.97 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-34 Score=299.90 Aligned_cols=431 Identities=11% Similarity=-0.035 Sum_probs=355.5
Q ss_pred CchhhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCC
Q 008265 67 LSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAP 146 (572)
Q Consensus 67 p~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p 146 (572)
|.++...|+.++..+.+.|++++|+.+|++|....+++ ..+..+...|.+.|++++|+.+|+++... .+
T Consensus 80 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~---------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~ 148 (597)
T 2xpi_A 80 SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNP---------NDAFWLAQVYCCTGDYARAKCLLTKEDLY--NR 148 (597)
T ss_dssp --CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCH---------HHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GT
T ss_pred hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCc---------hHHHHHHHHHHHcCcHHHHHHHHHHHhcc--cc
Confidence 44567889999999999999999999999999764432 23455788899999999999999998654 33
Q ss_pred cchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCC--------------CCCcccchHHHHHHHHhcCCChHHHHH
Q 008265 147 LELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR--------------LPVKELDEEFRIVQLCVNKPDVNLAIR 212 (572)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~--------------~~~~~~~~~~~ll~~~~~~g~~~~a~~ 212 (572)
+.. .+..+..++ .+.|++++|+.+|+++.... -.+.+..+|+.++.+|.+.|++++|++
T Consensus 149 ~~~----~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 221 (597)
T 2xpi_A 149 SSA----CRYLAAFCL---VKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKE 221 (597)
T ss_dssp CHH----HHHHHHHHH---HHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred chh----HHHHHHHHH---HHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHH
Confidence 333 455555544 44899999999998532211 012346789999999999999999999
Q ss_pred hhhcC----CCchhHH--------------------------------------HHHHHHHHhcCCHHHHHHHHHHHHhc
Q 008265 213 YACIV----PRADILF--------------------------------------CNFVREFGKKRDLVSALRAYDASKKH 250 (572)
Q Consensus 213 ~~~~~----~~~~~~~--------------------------------------~~li~~~~~~g~~~~a~~~~~~m~~~ 250 (572)
+|+.+ |.....+ +.++..|.+.|++++|.++|+.+.+.
T Consensus 222 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 301 (597)
T 2xpi_A 222 CYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL 301 (597)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG
T ss_pred HHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC
Confidence 99886 3332332 22356677889999999999998875
Q ss_pred CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc--CChHHHHHHHHHHHHcCCCCCHHHHH
Q 008265 251 LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYN 328 (572)
Q Consensus 251 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~ 328 (572)
.++..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+++.++.++. |++++|..+++++.+.. +.+..+++
T Consensus 302 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 377 (597)
T 2xpi_A 302 --EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWL 377 (597)
T ss_dssp --GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHH
T ss_pred --CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHH
Confidence 4789999999999999999999999999999765 236677888877755 89999999999998654 34788999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHH
Q 008265 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408 (572)
Q Consensus 329 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 408 (572)
.++.+|.+.|++++|.++|+++.+. .+.+..+|+.++.+|.+.|++++|+++|+++.+.+. .+..+|+.++.+|
T Consensus 378 ~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~ 451 (597)
T 2xpi_A 378 AVGIYYLCVNKISEARRYFSKSSTM-----DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQH 451 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHH
Confidence 9999999999999999999999874 245688999999999999999999999999998743 3788999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhcccccccccccCCchHHHHhhhhhccc
Q 008265 409 ANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488 (572)
Q Consensus 409 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (572)
.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+..
T Consensus 452 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------------------------- 505 (597)
T 2xpi_A 452 MQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLV------------------------- 505 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh-------------------------
Confidence 99999999999999999864 5578999999999999999999999999987532
Q ss_pred cccCCCCcccCCccchhhhhcCCCCC--HHHHHHHHHHHhh--cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCc
Q 008265 489 SITNTPNFVPNSHYSSFDKRFSFKPT--TTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNV 564 (572)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~ll~a~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 564 (572)
...+..|+ ..+|..+..+|.+ +.++|.++++++.+.+ +.+..+|..+..+|.+.|++
T Consensus 506 ------------------~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~ 566 (597)
T 2xpi_A 506 ------------------KKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIP 566 (597)
T ss_dssp ------------------HHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCH
T ss_pred ------------------hccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCH
Confidence 12245677 7899999999987 6789999999998854 34788999999999999999
Q ss_pred cccccc
Q 008265 565 EGALQC 570 (572)
Q Consensus 565 ~~a~~~ 570 (572)
++|.++
T Consensus 567 ~~A~~~ 572 (597)
T 2xpi_A 567 GLAITH 572 (597)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999764
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-32 Score=282.13 Aligned_cols=406 Identities=9% Similarity=-0.010 Sum_probs=329.5
Q ss_pred hcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHH
Q 008265 83 KDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNEC 162 (572)
Q Consensus 83 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~ 162 (572)
..|....+...+..+... + ...+..++..+.+.|++++|+.+|++|... .|+.. .+..+..++
T Consensus 65 ~~~~~~~~~~~~~~~~~~----~-------~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~----~~~~l~~~~ 127 (597)
T 2xpi_A 65 TDGSFLKERNAQNTDSLS----R-------EDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPN----DAFWLAQVY 127 (597)
T ss_dssp -----------------C----H-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHH----HHHHHHHHH
T ss_pred ccCccCCCCCccccchHH----H-------HHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCch----HHHHHHHHH
Confidence 445555565555544321 1 455778888999999999999999999864 56543 444455544
Q ss_pred HHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhc-CCCc-------------------hh
Q 008265 163 QRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI-VPRA-------------------DI 222 (572)
Q Consensus 163 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~-~~~~-------------------~~ 222 (572)
. +.|++++|+.+|+.+... +.+..+++.++.+|.+.|++++|+++|+. ++.. ..
T Consensus 128 ~---~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (597)
T 2xpi_A 128 C---CTGDYARAKCLLTKEDLY---NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEAS 201 (597)
T ss_dssp H---HTTCHHHHHHHHHHTCGG---GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHH
T ss_pred H---HcCcHHHHHHHHHHHhcc---ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHH
Confidence 4 479999999999988643 55678899999999999999999999994 4544 57
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHH--------------------------------------HHHH
Q 008265 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICR--------------------------------------TIID 264 (572)
Q Consensus 223 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~--------------------------------------~ll~ 264 (572)
+|+.++.+|.+.|++++|.++|++|.+.+.. +...+. .++.
T Consensus 202 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 280 (597)
T 2xpi_A 202 MCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLN 280 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHH
Confidence 8999999999999999999999999886532 233332 3355
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc--CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHH
Q 008265 265 VCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVL 342 (572)
Q Consensus 265 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 342 (572)
.|.+.|++++|.++|+++.+. +++..+|+.++.++. |++++|+.+|+++.+.+.. +..++..++.+|.+.|++++
T Consensus 281 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~ 357 (597)
T 2xpi_A 281 KTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNK 357 (597)
T ss_dssp TTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHH
T ss_pred HHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHH
Confidence 677889999999999999876 578999999988765 8999999999999987644 77889999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHH
Q 008265 343 AQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422 (572)
Q Consensus 343 a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 422 (572)
|..+++++.+. .+.+..+|+.++..|.+.|++++|.++|+++.+... .+..+|+.++.+|.+.|++++|.++|+
T Consensus 358 A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 431 (597)
T 2xpi_A 358 LYLISNDLVDR-----HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYT 431 (597)
T ss_dssp HHHHHHHHHHH-----CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHhh-----CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999863 256788999999999999999999999999987532 367899999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhcccccccccccCCchHHHHhhhhhccccccCCCCcccCCcc
Q 008265 423 EMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHY 502 (572)
Q Consensus 423 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (572)
++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.+..
T Consensus 432 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------------------------------------- 471 (597)
T 2xpi_A 432 TAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF--------------------------------------- 471 (597)
T ss_dssp HHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---------------------------------------
T ss_pred HHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------------------------------
Confidence 999874 5578999999999999999999999999987532
Q ss_pred chhhhhcCCCCCHHHHHHHHHHHhh--cHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHccCCccccccc
Q 008265 503 SSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTV----GLSPN--HISWTILIDACGGSGNVEGALQC 570 (572)
Q Consensus 503 ~~~~~~~~~~p~~~~~~~ll~a~~~--~~~~a~~~~~~m~~~----g~~p~--~~~~~~l~~~~~~~g~~~~a~~~ 570 (572)
..+..+|+.+...|.+ +.++|.++|+++.+. +..|+ ..+|..+..+|.+.|++++|+++
T Consensus 472 ---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~ 538 (597)
T 2xpi_A 472 ---------QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDA 538 (597)
T ss_dssp ---------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ---------CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 3478899999999987 679999999999876 77888 78999999999999999999764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.98 E-value=9.4e-31 Score=262.75 Aligned_cols=205 Identities=15% Similarity=0.233 Sum_probs=177.5
Q ss_pred HHHHHHHHHHHhcCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcC-----------Ch
Q 008265 238 VSALRAYDASKKHLSSPN-MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH-----------DL 305 (572)
Q Consensus 238 ~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-----------~~ 305 (572)
..+..+...+.+.+..+. ...++.+|++|++.|++++|+++|++|.+.|+.||..+||++|.+|+. +.
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 345556677777666544 346888999999999999999999999999999999999999998762 26
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHH
Q 008265 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385 (572)
Q Consensus 306 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 385 (572)
+.|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+ .| +.||..+|+++|.+|++.|++++|.++
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~---~g-~~Pd~~tyn~lI~~~~~~g~~~~A~~l 162 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKA---FG-IQPRLRSYGPALFGFCRKGDADKAYEV 162 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---TT-CCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cC-CCCccceehHHHHHHHHCCCHHHHHHH
Confidence 88999999999999999999999999999999999999999999987 55 899999999999999999999999999
Q ss_pred HHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 008265 386 KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446 (572)
Q Consensus 386 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 446 (572)
|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.|+..||+.++..|...
T Consensus 163 ~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 163 DAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999998764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=7.6e-31 Score=263.42 Aligned_cols=183 Identities=15% Similarity=0.254 Sum_probs=92.3
Q ss_pred HHHHHHHHHhCCCCCCH-HHHHHHHHHhc--CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC---------hHH
Q 008265 275 SRAIYEDLRSQNVTLNI-YVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN---------TVL 342 (572)
Q Consensus 275 a~~~~~~m~~~g~~p~~-~~~~~ll~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~---------~~~ 342 (572)
+..+.+++.++++.+.. ..++.+|.+|+ |++++|+++|++|.+.|+.||..||++||.+|++.+. +++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 33444445444443322 23455555544 4555555555555555555555555555555555554 344
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHH
Q 008265 343 AQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422 (572)
Q Consensus 343 a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 422 (572)
|.++|++|.. .| +.||..+|++||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|+
T Consensus 89 A~~lf~~M~~---~G-~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~ 164 (501)
T 4g26_A 89 GFDIFKQMIV---DK-VVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDA 164 (501)
T ss_dssp HHHHHHHHHH---TT-CCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHH---hC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHH
Confidence 5555555553 33 4555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 423 EMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 423 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
+|.+.|+.||..||++||.+|++.|++++|.++|++|++
T Consensus 165 ~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 165 HMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 555555555555555555555555555555555555543
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.3e-22 Score=197.22 Aligned_cols=372 Identities=12% Similarity=0.050 Sum_probs=306.2
Q ss_pred HhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHH
Q 008265 121 VKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQL 200 (572)
Q Consensus 121 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~ 200 (572)
..+.+.|++++|+..+.++.+. .|+... .+..+.. .+...|++++|...++...+. .|.+...|..+...
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~--~p~~~~---~~~~l~~---~~~~~~~~~~a~~~~~~a~~~--~p~~~~~~~~lg~~ 76 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQ--EPDNTG---VLLLLSS---IHFQCRRLDRSAHFSTLAIKQ--NPLLAEAYSNLGNV 76 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHH---HHHHHHH---HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHH---HHHHHHH---HHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHH
Confidence 4567899999999999998876 465431 2222222 234479999999999988764 46777889999999
Q ss_pred HhcCCChHHHHHhhhcC----CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 008265 201 CVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276 (572)
Q Consensus 201 ~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 276 (572)
+.+.|++++|+..|+.+ |.....+..+...+.+.|++++|.+.|+.+.+..+. +...+..+...+...|++++|.
T Consensus 77 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 155 (388)
T 1w3b_A 77 YKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAK 155 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHH
Confidence 99999999999998874 555678999999999999999999999999886432 4567788888999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhc--CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008265 277 AIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354 (572)
Q Consensus 277 ~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 354 (572)
+.|+++.+.. +-+..+|..+...+. |++++|...|+++.+.+.. +...+..+...+...|++++|...|++....
T Consensus 156 ~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~- 232 (388)
T 1w3b_A 156 ACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSL- 232 (388)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH-
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-
Confidence 9999998763 234667777766654 7999999999999987543 6778899999999999999999999999874
Q ss_pred HhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 008265 355 AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434 (572)
Q Consensus 355 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 434 (572)
.+.+..++..+...|.+.|++++|++.|+++.+.+.. +..+|..+..++.+.|++++|.+.++++.+.. +.+..
T Consensus 233 ----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 306 (388)
T 1w3b_A 233 ----SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHAD 306 (388)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHH
T ss_pred ----CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHH
Confidence 1345789999999999999999999999999987432 56789999999999999999999999999874 66889
Q ss_pred HHHHHHHHHHHhCCHhHHHHHHHHhhhcccccccccccCCchHHHHhhhhhccccccCCCCcccCCccchhhhhcCCCCC
Q 008265 435 CCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT 514 (572)
Q Consensus 435 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 514 (572)
++..+...+.+.|++++|.+.++++.+.. ..+
T Consensus 307 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------------------------------------------p~~ 338 (388)
T 1w3b_A 307 SLNNLANIKREQGNIEEAVRLYRKALEVF------------------------------------------------PEF 338 (388)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHTTSC------------------------------------------------TTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC------------------------------------------------CCc
Confidence 99999999999999999999999886521 335
Q ss_pred HHHHHHHHHHHhh--cHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccC
Q 008265 515 TTTYNILMKACCT--DYYRVKALMNEMRTVGLSPN-HISWTILIDACGGSG 562 (572)
Q Consensus 515 ~~~~~~ll~a~~~--~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g 562 (572)
..+|..+...+.+ +.++|...++++.+ +.|+ ...|..+...+...|
T Consensus 339 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 339 AAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHHHHHHHcc
Confidence 7788889888886 56899999999987 4565 567777777776655
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=3.5e-22 Score=197.00 Aligned_cols=357 Identities=13% Similarity=0.055 Sum_probs=293.5
Q ss_pred HHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhH
Q 008265 77 MASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFK 156 (572)
Q Consensus 77 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~ 156 (572)
+...+.+.|++++|++.++.+.+..+ +. ...+..+...+...|++++|...++...+. .|+. ...+.
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p--~~------~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~--~p~~---~~~~~ 71 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEP--DN------TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--NPLL---AEAYS 71 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT--TC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC---HHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC--CC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCc---hHHHH
Confidence 34567788999999999999988744 32 223444556678899999999999988876 3432 12344
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcC----CCchhHHHHHHHHHH
Q 008265 157 LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFG 232 (572)
Q Consensus 157 ~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~ 232 (572)
.+..+ +.+.|++++|+..|+++.+. .|+....|..+..++...|++++|.+.++.+ |.....+..+...+.
T Consensus 72 ~lg~~---~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 146 (388)
T 1w3b_A 72 NLGNV---YKERGQLQEAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLK 146 (388)
T ss_dssp HHHHH---HHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHH---HHHCCCHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 44443 34479999999999999874 5777778999999999999999999988774 555678888999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh--cCChHHHHH
Q 008265 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLE 310 (572)
Q Consensus 233 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~~~~a~~ 310 (572)
..|++++|.++|+.+.+... .+..+|..+...+.+.|++++|...|+++.+.+ +-+...|..+-..+ .+++++|..
T Consensus 147 ~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~ 224 (388)
T 1w3b_A 147 ALGRLEEAKACYLKAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVA 224 (388)
T ss_dssp TTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHH
T ss_pred HccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999988642 357899999999999999999999999998863 22345555555544 379999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHH
Q 008265 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390 (572)
Q Consensus 311 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 390 (572)
.+.+..+.... +..++..+...|.+.|++++|...|+++.+. .+.+..+|..+...+.+.|++++|++.|+++.
T Consensus 225 ~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 298 (388)
T 1w3b_A 225 AYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIEL-----QPHFPDAYCNLANALKEKGSVAEAEDCYNTAL 298 (388)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999876433 6788999999999999999999999999873 13356789999999999999999999999998
Q ss_pred HCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 391 SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 391 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
+.. +.+..+|..+...+.+.|++++|...++++.+.. +.+..++..+..++.+.|++++|.+.|+++.+
T Consensus 299 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 299 RLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred hhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 874 3477899999999999999999999999998763 45678999999999999999999999999875
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=7e-19 Score=180.15 Aligned_cols=367 Identities=12% Similarity=-0.006 Sum_probs=281.4
Q ss_pred hhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchh
Q 008265 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (572)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 150 (572)
...+......+.+.|++++|+..|+++.+..++ ..++..+...+...|++++|+..++++.+. .|+..
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~- 73 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKED---------PVFYSNLSACYVSVGDLKKVVEMSTKALEL--KPDYS- 73 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCC---------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CSCCH-
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc---------HHHHHhHHHHHHHHhhHHHHHHHHHHHhcc--ChHHH-
Confidence 456777778888888888888888888887543 334556667788888888888888888776 34421
Q ss_pred hhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCC-------------------------------------------
Q 008265 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLP------------------------------------------- 187 (572)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~------------------------------------------- 187 (572)
..+..+.. .+.+.|++++|+..|+.+.+.+..
T Consensus 74 --~~~~~l~~---~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 148 (514)
T 2gw1_A 74 --KVLLRRAS---ANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPA 148 (514)
T ss_dssp --HHHHHHHH---HHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-------------------
T ss_pred --HHHHHHHH---HHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChh
Confidence 13333333 334478888888888887665421
Q ss_pred ----------------------------------CcccchHHHHHHHHh---cCCChHHHHHhhhcCCC-----------
Q 008265 188 ----------------------------------VKELDEEFRIVQLCV---NKPDVNLAIRYACIVPR----------- 219 (572)
Q Consensus 188 ----------------------------------~~~~~~~~~ll~~~~---~~g~~~~a~~~~~~~~~----------- 219 (572)
|.+...+......+. +.|++++|+.+++.+..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 228 (514)
T 2gw1_A 149 KERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNE 228 (514)
T ss_dssp --------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTT
T ss_pred hHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCcc
Confidence 111222233333333 38999999998876432
Q ss_pred -------chhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 008265 220 -------ADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292 (572)
Q Consensus 220 -------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 292 (572)
...++..+...+...|++++|...|+.+.+.... ...|..+...+...|++++|...|+++.+.. +.+..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 305 (514)
T 2gw1_A 229 DEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSS 305 (514)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTH
T ss_pred ccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHH
Confidence 2367888999999999999999999999886544 8889999999999999999999999998763 22445
Q ss_pred HHHHHHHHh--cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008265 293 VFNSLMNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370 (572)
Q Consensus 293 ~~~~ll~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li 370 (572)
.+..+...+ .|++++|...++++.+.... +...+..+...+...|++++|...++.+.+. .+.+...+..+.
T Consensus 306 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~la 379 (514)
T 2gw1_A 306 VYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRK-----FPEAPEVPNFFA 379 (514)
T ss_dssp HHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH-----STTCSHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----cccCHHHHHHHH
Confidence 555555543 48999999999999886544 5678888999999999999999999999874 234567889999
Q ss_pred HHHHccccHHHHHHHHHHHHHCCCC-Cc----hhhHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008265 371 KVFADAKWWQMALKVKEDMLSAGVT-PN----TITWSSLINACAN---AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442 (572)
Q Consensus 371 ~~~~~~g~~~~a~~~~~~m~~~g~~-p~----~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 442 (572)
..|.+.|++++|...++++.+.... ++ ...|..+...+.. .|++++|...++++.+.. +.+..++..+...
T Consensus 380 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 458 (514)
T 2gw1_A 380 EILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQM 458 (514)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 9999999999999999998765221 11 2378899999999 999999999999998864 4567888999999
Q ss_pred HHHhCCHhHHHHHHHHhhhccc
Q 008265 443 CVEACQFDRAFRLFRSWTLSKT 464 (572)
Q Consensus 443 ~~~~g~~~~A~~~~~~m~~~~~ 464 (572)
+.+.|++++|.+.|++..+...
T Consensus 459 ~~~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 459 KLQQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCS
T ss_pred HHHhcCHHHHHHHHHHHHHhcc
Confidence 9999999999999999876543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.2e-18 Score=173.30 Aligned_cols=335 Identities=12% Similarity=0.037 Sum_probs=241.3
Q ss_pred hhhhcccCCchhhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHH
Q 008265 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (572)
Q Consensus 59 ~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 138 (572)
+.+.+..+|.. ...+..+...+.+.|++++|+.+|+.+.+..+. . ..++..+...+...|++++|+..|++
T Consensus 15 ~~~~~~~~p~~-~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~--~------~~~~~~l~~~~~~~g~~~~A~~~~~~ 85 (450)
T 2y4t_A 15 TENLYFQSMAD-VEKHLELGKKLLAAGQLADALSQFHAAVDGDPD--N------YIAYYRRATVFLAMGKSKAALPDLTK 85 (450)
T ss_dssp --------CHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccccccccHHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc--c------HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34445555655 789999999999999999999999999987432 1 44566677788999999999999999
Q ss_pred hhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCccc---chHHHHHHHHhcCCChHHHHHhhh
Q 008265 139 LNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKEL---DEEFRIVQLCVNKPDVNLAIRYAC 215 (572)
Q Consensus 139 m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~ 215 (572)
+.+.+ |+.. ..+..+..+ +.+.|++++|+..|+++.+. .|.+. ..+..+...+..
T Consensus 86 al~~~--p~~~---~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~------------ 143 (450)
T 2y4t_A 86 VIQLK--MDFT---AARLQRGHL---LLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEM------------ 143 (450)
T ss_dssp HHHHC--TTCH---HHHHHHHHH---HHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHH------------
T ss_pred HHhcC--CCcH---HHHHHHHHH---HHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHH------------
Confidence 98873 4321 233333333 34589999999999999874 35544 455555443211
Q ss_pred cCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 008265 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFN 295 (572)
Q Consensus 216 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 295 (572)
..+..+...+.+.|++++|...|+.+.+.. +.+...+..+..+|.+.|++++|.+.|+++.+.. +.+...|.
T Consensus 144 ------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 215 (450)
T 2y4t_A 144 ------QRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFY 215 (450)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHH
T ss_pred ------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 223345566777788888888888877653 2366777888888888888888888888877642 23456666
Q ss_pred HHHHHhc--CChHHHHHHHHHHHHcCCCCCHHHHHHH------------HHHHHHcCChHHHHHHHHHHHHHHHhCCCCC
Q 008265 296 SLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNIL------------LKACCLAGNTVLAQEIYGEVKHLEAKGVLKL 361 (572)
Q Consensus 296 ~ll~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 361 (572)
.+...+. |++++|+..|+++.+.... +...+..+ ...|.+.|++++|...|+++.+. .|
T Consensus 216 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~------~p 288 (450)
T 2y4t_A 216 KISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT------EP 288 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CC
Confidence 6655543 7788888888887765322 33444443 78899999999999999999873 34
Q ss_pred C-----HHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHH
Q 008265 362 D-----VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP-NSQC 435 (572)
Q Consensus 362 ~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~ 435 (572)
+ ...|..+...+.+.|++++|+..++++.+.. +.+...|..+..+|...|++++|...++++.+. .| +...
T Consensus 289 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~ 365 (450)
T 2y4t_A 289 SIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQI 365 (450)
T ss_dssp SSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHH
T ss_pred cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHH
Confidence 4 4578889999999999999999999988763 236788999999999999999999999999875 44 4555
Q ss_pred HHHHHHH
Q 008265 436 CNILLQA 442 (572)
Q Consensus 436 ~~~li~~ 442 (572)
+..+..+
T Consensus 366 ~~~l~~~ 372 (450)
T 2y4t_A 366 REGLEKA 372 (450)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555533
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.86 E-value=5.4e-18 Score=170.45 Aligned_cols=286 Identities=12% Similarity=0.043 Sum_probs=238.8
Q ss_pred HHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcC----CCchhHHHHHHHHHHhcCCHHH
Q 008265 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVS 239 (572)
Q Consensus 164 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~ 239 (572)
.+.+.|++++|+.+|+.+.+. .|.+...|..+..++...|++++|+..|+.+ |.....+..+...|.+.|++++
T Consensus 35 ~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 112 (450)
T 2y4t_A 35 KLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDE 112 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Confidence 445589999999999999875 4667788999999999999999999998874 5566889999999999999999
Q ss_pred HHHHHHHHHhcCCCCcH---HHHHHHH------------HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh--c
Q 008265 240 ALRAYDASKKHLSSPNM---YICRTII------------DVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--A 302 (572)
Q Consensus 240 a~~~~~~m~~~~~~~~~---~~~~~ll------------~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~--~ 302 (572)
|.+.|+.+.+... .+. ..+..+. ..+.+.|++++|...|+++.+.. +.+...+..+..++ .
T Consensus 113 A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 190 (450)
T 2y4t_A 113 AEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKE 190 (450)
T ss_dssp HHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHC
Confidence 9999999988532 233 5555553 44899999999999999998763 33566677776665 4
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHH------------H
Q 008265 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI------------V 370 (572)
Q Consensus 303 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l------------i 370 (572)
|++++|...|+++.+... .+..++..+...|...|++++|...|+++... .+.+...+..+ .
T Consensus 191 g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~~~~~~~~~~~~ 264 (450)
T 2y4t_A 191 GEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKL-----DQDHKRCFAHYKQVKKLNKLIESA 264 (450)
T ss_dssp TCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCChHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999987643 36889999999999999999999999999874 13344455554 7
Q ss_pred HHHHccccHHHHHHHHHHHHHCCCCCc-----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 008265 371 KVFADAKWWQMALKVKEDMLSAGVTPN-----TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445 (572)
Q Consensus 371 ~~~~~~g~~~~a~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 445 (572)
..|.+.|++++|++.|+++.+. .|+ ...|..+..++.+.|++++|...++++.+.. +.+..+|..+..+|..
T Consensus 265 ~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~ 341 (450)
T 2y4t_A 265 EELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLI 341 (450)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 8899999999999999999886 444 3478889999999999999999999998763 4478999999999999
Q ss_pred hCCHhHHHHHHHHhhhc
Q 008265 446 ACQFDRAFRLFRSWTLS 462 (572)
Q Consensus 446 ~g~~~~A~~~~~~m~~~ 462 (572)
.|++++|.+.|++..+.
T Consensus 342 ~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 342 EEMYDEAIQDYETAQEH 358 (450)
T ss_dssp TTCHHHHHHHHHHHHTT
T ss_pred hcCHHHHHHHHHHHHHh
Confidence 99999999999998764
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.2e-18 Score=174.34 Aligned_cols=366 Identities=8% Similarity=-0.069 Sum_probs=278.8
Q ss_pred HHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccch
Q 008265 114 EMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDE 193 (572)
Q Consensus 114 ~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 193 (572)
..+......+.+.|++++|+..|+++.+.. |+.. .+..+..++ .+.|++++|+..++.+.+. .|.+...
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~----~~~~la~~~---~~~g~~~~A~~~~~~al~~--~p~~~~~ 75 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPV----FYSNLSACY---VSVGDLKKVVEMSTKALEL--KPDYSKV 75 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHH----HHHHHHHHH---HHHTCHHHHHHHHHHHHHH--CSCCHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHH----HHHhHHHHH---HHHhhHHHHHHHHHHHhcc--ChHHHHH
Confidence 345555667889999999999999999974 6533 343344433 3479999999999999875 4777788
Q ss_pred HHHHHHHHhcCCChHHHHHhhhcC----CCc-------------------------------------------------
Q 008265 194 EFRIVQLCVNKPDVNLAIRYACIV----PRA------------------------------------------------- 220 (572)
Q Consensus 194 ~~~ll~~~~~~g~~~~a~~~~~~~----~~~------------------------------------------------- 220 (572)
+..+..++...|++++|...|+.+ +.+
T Consensus 76 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (514)
T 2gw1_A 76 LLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQ 155 (514)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC--------------------------
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhc
Confidence 999999999999999999988654 111
Q ss_pred ------------------------------hhHHHHHHHHHH---hcCCHHHHHHHHHHHHh-----c--CC------CC
Q 008265 221 ------------------------------DILFCNFVREFG---KKRDLVSALRAYDASKK-----H--LS------SP 254 (572)
Q Consensus 221 ------------------------------~~~~~~li~~~~---~~g~~~~a~~~~~~m~~-----~--~~------~~ 254 (572)
...+......+. +.|++++|..+|+.+.+ . .. +.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (514)
T 2gw1_A 156 ENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEK 235 (514)
T ss_dssp -CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHH
T ss_pred cCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChH
Confidence 122222333333 38999999999998877 2 11 12
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008265 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLK 332 (572)
Q Consensus 255 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 332 (572)
+...+..+...+...|++++|...|+++.+.. |+...+..+..++ .|++++|...++++.+.... +...+..+..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 312 (514)
T 2gw1_A 236 LAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQ 312 (514)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHH
Confidence 35678888899999999999999999998764 3455565555554 37899999999998876433 5678888899
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcC
Q 008265 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412 (572)
Q Consensus 333 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 412 (572)
.+...|++++|...|+++.+. .+.+...+..+...|...|++++|+..++++.+... .+...|..+...|.+.|
T Consensus 313 ~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~ 386 (514)
T 2gw1_A 313 MNFILQNYDQAGKDFDKAKEL-----DPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKN 386 (514)
T ss_dssp HHHHTTCTTHHHHHHHHHHHT-----CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHHh-----ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCC
Confidence 999999999999999998873 233566888899999999999999999999887632 25678888999999999
Q ss_pred CHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHH---hCCHhHHHHHHHHhhhcccccccccccCCchHHHHhhhh
Q 008265 413 LVEQAMHLFEEMLQAGC-EPN----SQCCNILLQACVE---ACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEH 484 (572)
Q Consensus 413 ~~~~a~~~~~~m~~~~~-~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (572)
++++|...++++.+... .++ ...+..+...+.+ .|++++|.+.|++..+..
T Consensus 387 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~--------------------- 445 (514)
T 2gw1_A 387 DFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD--------------------- 445 (514)
T ss_dssp CHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC---------------------
T ss_pred CHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC---------------------
Confidence 99999999999876421 112 3478888899999 999999999999876532
Q ss_pred hccccccCCCCcccCCccchhhhhcCCCCCHHHHHHHHHHHhh--cHHHHHHHHHHHHhCCCCCCHH
Q 008265 485 KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHI 549 (572)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~a~~~--~~~~a~~~~~~m~~~g~~p~~~ 549 (572)
..+..+|..+...|.. +.++|...+++..+ +.|+..
T Consensus 446 ---------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~ 483 (514)
T 2gw1_A 446 ---------------------------PRSEQAKIGLAQMKLQQEDIDEAITLFEESAD--LARTME 483 (514)
T ss_dssp ---------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSHH
T ss_pred ---------------------------cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hccccH
Confidence 2356677777777765 67899999999988 457654
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-16 Score=163.74 Aligned_cols=397 Identities=9% Similarity=-0.023 Sum_probs=282.6
Q ss_pred hhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcch
Q 008265 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (572)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 149 (572)
....|..+...+.+.|++++|+..|+.+.+..+. . ...+..+...+...|++++|+..|+++.+. .|+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~ 93 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN--E------PVFYSNISACYISTGDLEKVIEFTTKALEI--KPDHS 93 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT--C------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC--C------cHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchH
Confidence 3577888899999999999999999999987533 1 445666777889999999999999999886 35422
Q ss_pred hhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchH----------------------------------H
Q 008265 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEE----------------------------------F 195 (572)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----------------------------------~ 195 (572)
..+..+.. .+...|++++|+..|+.+.. .|.....+ .
T Consensus 94 ---~~~~~la~---~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~ 164 (537)
T 3fp2_A 94 ---KALLRRAS---ANESLGNFTDAMFDLSVLSL---NGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN 164 (537)
T ss_dssp ---HHHHHHHH---HHHHHTCHHHHHHHHHHHC--------------CHHHHHHHHHHHHHHHHHCC-------CCCCCH
T ss_pred ---HHHHHHHH---HHHHcCCHHHHHHHHHHHhc---CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH
Confidence 23333333 33457999999999964421 12111111 1
Q ss_pred HHHHHHhcCCChHHHHHhhhcCCCchh----HHHHHHHHHHh--------cCCHHHHHHHHHHHHhcCCCCc------HH
Q 008265 196 RIVQLCVNKPDVNLAIRYACIVPRADI----LFCNFVREFGK--------KRDLVSALRAYDASKKHLSSPN------MY 257 (572)
Q Consensus 196 ~ll~~~~~~g~~~~a~~~~~~~~~~~~----~~~~li~~~~~--------~g~~~~a~~~~~~m~~~~~~~~------~~ 257 (572)
..+..+....+.+.+...+........ ....+...+.. .|++++|..+|+.+.+...... ..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~ 244 (537)
T 3fp2_A 165 TSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAAL 244 (537)
T ss_dssp HHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHH
T ss_pred hHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHH
Confidence 122233333344444444433322222 22233333222 2589999999999987543211 33
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc--CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008265 258 ICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335 (572)
Q Consensus 258 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 335 (572)
.+..+...+...|++++|...|++..+. .|+...+..+...+. |++++|...++++.+.... +..++..+...+.
T Consensus 245 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 321 (537)
T 3fp2_A 245 ALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYF 321 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHH
Confidence 5777778889999999999999999986 456666666666654 7999999999999886543 6788999999999
Q ss_pred HcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHH
Q 008265 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415 (572)
Q Consensus 336 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 415 (572)
..|++++|...|+++.+.. +.+...+..+...|...|++++|++.++++.+... .+...+..+...+...|+++
T Consensus 322 ~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~ 395 (537)
T 3fp2_A 322 ILQDYKNAKEDFQKAQSLN-----PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP-TLPEVPTFFAEILTDRGDFD 395 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHC-----TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHH
T ss_pred hcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHH
Confidence 9999999999999998742 33567889999999999999999999999988742 25678899999999999999
Q ss_pred HHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHHh----------CCHhHHHHHHHHhhhcccccccccccCCchHHHH
Q 008265 416 QAMHLFEEMLQAG-----CEPNSQCCNILLQACVEA----------CQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRIS 480 (572)
Q Consensus 416 ~a~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 480 (572)
+|...++++.+.. .......+......+.+. |++++|...|++..+..
T Consensus 396 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~----------------- 458 (537)
T 3fp2_A 396 TAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD----------------- 458 (537)
T ss_dssp HHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-----------------
Confidence 9999999987632 122233455556777888 99999999999887532
Q ss_pred hhhhhccccccCCCCcccCCccchhhhhcCCCCCHHHHHHHHHHHhh--cHHHHHHHHHHHHhC
Q 008265 481 NMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTV 542 (572)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~a~~~--~~~~a~~~~~~m~~~ 542 (572)
..+...|..+...|.. +.++|...|++..+.
T Consensus 459 -------------------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 459 -------------------------------PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp -------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------------------------------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 2356677777777775 678999999998874
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-17 Score=171.06 Aligned_cols=394 Identities=10% Similarity=-0.002 Sum_probs=283.1
Q ss_pred HHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccc
Q 008265 113 LEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELD 192 (572)
Q Consensus 113 ~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 192 (572)
...+......+.+.|++++|+..|+++.+. .|+.. ..+..+..+ +.+.|++++|+..+++..+. .|.+..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~---~~~~~la~~---~~~~g~~~~A~~~~~~al~~--~p~~~~ 94 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIEL--DPNEP---VFYSNISAC---YISTGDLEKVIEFTTKALEI--KPDHSK 94 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHH--CTTCH---HHHHHHHHH---HHHHTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhh--CCCCc---HHHHHHHHH---HHHcCCHHHHHHHHHHHHhc--CCchHH
Confidence 445666777889999999999999999887 34422 233333333 34479999999999999875 477778
Q ss_pred hHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCcHH---------
Q 008265 193 EEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHL------SSPNMY--------- 257 (572)
Q Consensus 193 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~------~~~~~~--------- 257 (572)
.+..+...+...|++++|+..|+.+...+......+..+...+....|...++.+.... ..|+..
T Consensus 95 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 174 (537)
T 3fp2_A 95 ALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIF 174 (537)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhc
Confidence 89999999999999999999997665444444455666667777788888888875431 112222
Q ss_pred ---------------------HHHHHHHHHHh--------cCCHHHHHHHHHHHHhCCCCCC-HHH-------HHHHHHH
Q 008265 258 ---------------------ICRTIIDVCGI--------CGDYMKSRAIYEDLRSQNVTLN-IYV-------FNSLMNV 300 (572)
Q Consensus 258 ---------------------~~~~ll~~~~~--------~g~~~~a~~~~~~m~~~g~~p~-~~~-------~~~ll~~ 300 (572)
....+...+.. .|++++|..+|+++.+.. |+ ... +..+-..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~ 252 (537)
T 3fp2_A 175 DSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIF 252 (537)
T ss_dssp CHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHH
Confidence 12222222221 247899999999998763 33 222 2222222
Q ss_pred --hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcccc
Q 008265 301 --NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378 (572)
Q Consensus 301 --~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 378 (572)
..|++++|...++++.+.. |+...+..+...+...|++++|...|+++.+. .+.+..+|..+...+...|+
T Consensus 253 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~ 325 (537)
T 3fp2_A 253 HFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDL-----NPEYPPTYYHRGQMYFILQD 325 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTC
T ss_pred HHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhcc-----CCCCHHHHHHHHHHHHhcCC
Confidence 3489999999999998864 55788888999999999999999999999874 24567889999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHH
Q 008265 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (572)
Q Consensus 379 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 458 (572)
+++|++.++++.+.... +...|..+...|...|++++|..+++++.+.. +.+...+..+...+.+.|++++|.+.|++
T Consensus 326 ~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 403 (537)
T 3fp2_A 326 YKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDI 403 (537)
T ss_dssp HHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999999999886432 56788999999999999999999999998874 45677899999999999999999999999
Q ss_pred hhhcccccccccccCCchHHHHhhhhhccccccCCCCcccCCccchhhhhcCCCCCHHHHHHHHHHHh------------
Q 008265 459 WTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC------------ 526 (572)
Q Consensus 459 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~a~~------------ 526 (572)
+.+....... .......+......+.
T Consensus 404 a~~~~~~~~~------------------------------------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 441 (537)
T 3fp2_A 404 AKRLEEVQEK------------------------------------------IHVGIGPLIGKATILARQSSQDPTQLDE 441 (537)
T ss_dssp HHHHHHHCSS------------------------------------------CSSTTHHHHHHHHHHHHHHTC----CCH
T ss_pred HHHcCCcchh------------------------------------------hHHHHHHHHHHHHHHHHHhhccchhhhH
Confidence 8764422100 1111112222222222
Q ss_pred hcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCccccccc
Q 008265 527 TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQC 570 (572)
Q Consensus 527 ~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~ 570 (572)
++.++|...++...+.. +.+..++..+...|.+.|++++|.+.
T Consensus 442 ~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 484 (537)
T 3fp2_A 442 EKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIEL 484 (537)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHH
Confidence 45689999999998743 23567899999999999999998764
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.4e-19 Score=184.72 Aligned_cols=133 Identities=16% Similarity=0.190 Sum_probs=119.8
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhh
Q 008265 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400 (572)
Q Consensus 321 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 400 (572)
.--..||+++|++|++.|++++|.++|++|.++...| +.||+.|||+||.+||+.|++++|.++|++|.+.|+.||.+|
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG-~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKR-KLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHH-TTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcC-CCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 3345799999999999999999999999998765566 799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHH
Q 008265 401 WSSLINACANAGL-VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454 (572)
Q Consensus 401 ~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 454 (572)
||+||.++++.|+ .++|.++|++|.+.|+.||..+|++++.++.+.+-++.+.+
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrk 257 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHK 257 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGG
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHH
Confidence 9999999999998 57899999999999999999999999987776644444433
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.8e-19 Score=184.22 Aligned_cols=154 Identities=12% Similarity=0.021 Sum_probs=129.5
Q ss_pred CCCHHHHHHHHHHHHccccHHHHHHHHHHHHH---CCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 008265 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLS---AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436 (572)
Q Consensus 360 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 436 (572)
..-..+||+||++||+.|++++|.++|.+|.+ .|+.||.+|||+||.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 34456999999999999999999999988764 589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCC-HhHHHHHHHHhhhcccccccccccCCchHHHHhhhhhccccccCCCCcccCCccchhhhhcCCCCCH
Q 008265 437 NILLQACVEACQ-FDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTT 515 (572)
Q Consensus 437 ~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 515 (572)
++||.++++.|+ .++|.++|++|.+.| +.||.
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG-----------------------------------------------~~PD~ 236 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEG-----------------------------------------------LKLQA 236 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHT-----------------------------------------------CCSHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcC-----------------------------------------------CCCCh
Confidence 999999999998 478999999998665 79999
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHccCC
Q 008265 516 TTYNILMKACCTDYYRVKALMNEMRTVGLSPN------HISWTILIDACGGSGN 563 (572)
Q Consensus 516 ~~~~~ll~a~~~~~~~a~~~~~~m~~~g~~p~------~~~~~~l~~~~~~~g~ 563 (572)
.+|++++.++.++ .+.+..+++ .-++.|+ ..|...|.+.|.+.+.
T Consensus 237 vtY~~ll~~~eR~--~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~dl~s~d~~ 287 (1134)
T 3spa_A 237 LFTAVLLSEEDRA--TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRDVYAKDGR 287 (1134)
T ss_dssp HHHHSCCCHHHHH--HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHHHHCCCSC
T ss_pred hhcccccChhhHH--HHHHHHHHh-CcccCCCCCCcccccchHHHHHHHccCCC
Confidence 9999998766543 344444444 3466665 4456667777776653
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=6.3e-15 Score=142.91 Aligned_cols=288 Identities=10% Similarity=0.023 Sum_probs=232.4
Q ss_pred HHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcC----CCchhHHHHHHHHHHhcCCHHH
Q 008265 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVS 239 (572)
Q Consensus 164 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~ 239 (572)
.+...|++++|+..|+++.+. .|.+...+..+...+...|++++|+..++.. |.....+..+...+...|++++
T Consensus 12 ~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 89 (359)
T 3ieg_A 12 KLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDE 89 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHH
Confidence 345589999999999999875 4667788999999999999999999998774 5566889999999999999999
Q ss_pred HHHHHHHHHhcCCC--CcHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh--cC
Q 008265 240 ALRAYDASKKHLSS--PNMYICRTI------------IDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AH 303 (572)
Q Consensus 240 a~~~~~~m~~~~~~--~~~~~~~~l------------l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~--~~ 303 (572)
|...|+...+.... .+...+..+ ...+...|++++|.+.|+++.+.. +.+...+..+...+ .|
T Consensus 90 A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 168 (359)
T 3ieg_A 90 AEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEG 168 (359)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCC
Confidence 99999999885320 134444444 578899999999999999998763 23455555555543 48
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHH------------HHHH
Q 008265 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS------------TIVK 371 (572)
Q Consensus 304 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~------------~li~ 371 (572)
++++|...++++.+... .+..++..+...+...|++++|...|+...+.. +.+...+. .+..
T Consensus 169 ~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~ 242 (359)
T 3ieg_A 169 EPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-----QDHKRCFAHYKQVKKLNKLIESAE 242 (359)
T ss_dssp CHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----ccchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988653 378889999999999999999999999998741 23333333 2366
Q ss_pred HHHccccHHHHHHHHHHHHHCCCCCch----hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Q 008265 372 VFADAKWWQMALKVKEDMLSAGVTPNT----ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447 (572)
Q Consensus 372 ~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 447 (572)
.+.+.|++++|...++++.+.... +. ..+..+..++...|++++|...+++..+.. +.+..++..+...+.+.|
T Consensus 243 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g 320 (359)
T 3ieg_A 243 ELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEE 320 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcC
Confidence 688999999999999999886432 22 235567789999999999999999998863 447889999999999999
Q ss_pred CHhHHHHHHHHhhhc
Q 008265 448 QFDRAFRLFRSWTLS 462 (572)
Q Consensus 448 ~~~~A~~~~~~m~~~ 462 (572)
++++|.+.|++..+.
T Consensus 321 ~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 321 MYDEAIQDYEAAQEH 335 (359)
T ss_dssp CHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999998753
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.9e-15 Score=143.72 Aligned_cols=327 Identities=13% Similarity=0.041 Sum_probs=220.3
Q ss_pred hhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchh
Q 008265 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (572)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 150 (572)
...+..+...+...|++++|+..|+.+.+..+. . ...+..+...+...|++++|+..|+++.+. .|+..
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~--~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~- 71 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPD--N------YIAYYRRATVFLAMGKSKAALPDLTKVIAL--KMDFT- 71 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc--c------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCcc-
Confidence 567888889999999999999999999987443 1 345666777888999999999999998886 34322
Q ss_pred hhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCC---cccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHH
Q 008265 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPV---KELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNF 227 (572)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~l 227 (572)
..+..+.. .+...|++++|+..|+...+. .| .+...+..+..... ...+..+
T Consensus 72 --~~~~~l~~---~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~------------------~~~~~~~ 126 (359)
T 3ieg_A 72 --AARLQRGH---LLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADE------------------MQRLRSQ 126 (359)
T ss_dssp --HHHHHHHH---HHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH------------------HHHHHHH
T ss_pred --hHHHHHHH---HHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHH------------------HHHHHHH
Confidence 23333333 334479999999999998865 34 33333433321110 0123334
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh--cCCh
Q 008265 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDL 305 (572)
Q Consensus 228 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~~ 305 (572)
...+...|++++|.++++.+.+... .+...+..+...+...|++++|...+++..+.. +.+...+..+...+ .|++
T Consensus 127 a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 204 (359)
T 3ieg_A 127 ALDAFDGADYTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDH 204 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 5566667777777777776665432 345666666677777777777777777766542 22344444444433 2667
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHH------------HHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCC-H----HHHHH
Q 008265 306 KFTLEVYKNMQKLGVMADMASYN------------ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-V----FTYST 368 (572)
Q Consensus 306 ~~a~~~~~~m~~~~~~~~~~~~~------------~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~----~~~~~ 368 (572)
++|...++...+.... +...+. .+...+.+.|++++|...++++.+. .|+ . ..+..
T Consensus 205 ~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~~~ 277 (359)
T 3ieg_A 205 ELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT------EPSVAEYTVRSKER 277 (359)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCchHHHHHHHHH
Confidence 7777777766654322 222222 3366788999999999999998874 233 2 23556
Q ss_pred HHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008265 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444 (572)
Q Consensus 369 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 444 (572)
+...+.+.|++++|++.+++..+.. +.+...|..+...|...|++++|.+.|++..+.. +-+...+..+..+..
T Consensus 278 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 278 ICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 7788999999999999999998863 2267888999999999999999999999998763 334555666555543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.74 E-value=9.8e-16 Score=149.44 Aligned_cols=283 Identities=12% Similarity=0.006 Sum_probs=208.7
Q ss_pred hhHHHHHH-HHHHHHhCCCC--CcccchHHHHHHHHhcCCChHHHHHhhhcC----CCchhHHHHHHHHHHhcCCHHHHH
Q 008265 169 GEVEMFVG-LMEVLEEFRLP--VKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSAL 241 (572)
Q Consensus 169 g~~~~a~~-~~~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~ 241 (572)
|++++|+. .+++....... ..+...+..+...+...|++++|+..++.+ |.+..++..+...+.+.|++++|.
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 118 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAI 118 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 56666665 55543332111 112344556666666777777776666553 444577888888999999999999
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH---------------HHH--HhcCC
Q 008265 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS---------------LMN--VNAHD 304 (572)
Q Consensus 242 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~---------------ll~--~~~~~ 304 (572)
..|+.+.+... .+...+..+...|...|++++|.+.|+++.+...... ..+.. .+. ...|+
T Consensus 119 ~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (368)
T 1fch_A 119 SALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYA-HLVTPAEEGAGGAGLGPSKRILGSLLSDSL 196 (368)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTG-GGCC---------------CTTHHHHHHHH
T ss_pred HHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHhhhhcccHHHHHHHHHhhccc
Confidence 99998887642 3677888899999999999999999999887632111 11110 011 13478
Q ss_pred hHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHH
Q 008265 305 LKFTLEVYKNMQKLGVMA-DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383 (572)
Q Consensus 305 ~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 383 (572)
+++|...++++.+..... +..++..+...|.+.|++++|...|+++... .+.+...|..+...+.+.|++++|+
T Consensus 197 ~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 197 FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV-----RPNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999998764332 5788999999999999999999999999874 2446789999999999999999999
Q ss_pred HHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----------CCHHHHHHHHHHHHHhCCHhHHH
Q 008265 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE----------PNSQCCNILLQACVEACQFDRAF 453 (572)
Q Consensus 384 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~----------p~~~~~~~li~~~~~~g~~~~A~ 453 (572)
+.++++.+... .+...+..+..+|.+.|++++|...|+++.+.... ....+|..+..+|.+.|+.++|.
T Consensus 272 ~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 272 AAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 99999987632 35678999999999999999999999998764211 12688999999999999999999
Q ss_pred HHHHHh
Q 008265 454 RLFRSW 459 (572)
Q Consensus 454 ~~~~~m 459 (572)
.++++-
T Consensus 351 ~~~~~~ 356 (368)
T 1fch_A 351 AADARD 356 (368)
T ss_dssp HHHTTC
T ss_pred HhHHHH
Confidence 998743
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.9e-14 Score=137.81 Aligned_cols=261 Identities=11% Similarity=0.025 Sum_probs=188.3
Q ss_pred chHHHHHHHHhcCCChHHHHHhhhcC----CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q 008265 192 DEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCG 267 (572)
Q Consensus 192 ~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 267 (572)
..+..+...+...|++++|+++++.+ |.+...+..++..+...|++++|..+++.+.+... .+...|..+...+.
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 101 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAVGCYYL 101 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHH
Confidence 44455555555666666666655543 33345566667777777888888888887776532 24567777777788
Q ss_pred hcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHH
Q 008265 268 ICG-DYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQ 344 (572)
Q Consensus 268 ~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 344 (572)
..| ++++|.+.|++..+.. +.+...|..+...+ .|++++|...++++.+.... +...+..+...|...|++++|.
T Consensus 102 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~ 179 (330)
T 3hym_B 102 MVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKLAE 179 (330)
T ss_dssp HSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHHHH
Confidence 888 7888888888877653 12344455444443 37888888888887765433 4556666888888899999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCC--------CCCchhhHHHHHHHHHHcCCHHH
Q 008265 345 EIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG--------VTPNTITWSSLINACANAGLVEQ 416 (572)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--------~~p~~~~~~~li~~~~~~g~~~~ 416 (572)
..++++.+. .+.+...+..+...+...|++++|...+++..+.. ...+..+|..+..+|...|++++
T Consensus 180 ~~~~~al~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 180 RFFSQALSI-----APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHTT-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHh-----CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 999888763 24456788888888999999999999998887642 12234678888889999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 417 AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 417 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
|...+++..+.. +.+...+..+...+.+.|++++|.+.|++..+
T Consensus 255 A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 255 ALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 999999988764 44677888888899999999999999987654
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-14 Score=138.80 Aligned_cols=278 Identities=10% Similarity=-0.056 Sum_probs=224.2
Q ss_pred HhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcC----CCchhHHHHHHHHHHhcC-CHHH
Q 008265 165 LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKR-DLVS 239 (572)
Q Consensus 165 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g-~~~~ 239 (572)
+...|++++|+.+|+++.+. .|.+...+..++..+...|++++|..+++.+ |.+...+..+...+...| ++++
T Consensus 32 ~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 109 (330)
T 3hym_B 32 HYYNCDFKMCYKLTSVVMEK--DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEH 109 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHc--CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHH
Confidence 34479999999999999875 4566677888889999999999999988764 566688999999999999 9999
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--hcCChHHHHHHHHHHHH
Q 008265 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQK 317 (572)
Q Consensus 240 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~--~~~~~~~a~~~~~~m~~ 317 (572)
|.+.|+...+... .+...|..+...+...|++++|.+.|++..+.... +...+..+... ..|++++|...+++..+
T Consensus 110 A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 187 (330)
T 3hym_B 110 ARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKLAERFFSQALS 187 (330)
T ss_dssp HHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999987643 35678999999999999999999999999876422 23334334333 45899999999999988
Q ss_pred cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCC
Q 008265 318 LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV----LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393 (572)
Q Consensus 318 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 393 (572)
.... +...+..+...+...|++++|...++++.+...... .+.+..++..+...|.+.|++++|+..+++..+..
T Consensus 188 ~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 266 (330)
T 3hym_B 188 IAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI 266 (330)
T ss_dssp TCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Confidence 6533 678899999999999999999999999987532110 13345689999999999999999999999998764
Q ss_pred CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCH
Q 008265 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC-VEACQF 449 (572)
Q Consensus 394 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~~ 449 (572)
.. +...|..+..+|.+.|++++|.+.+++..+.. +.+...+..+..++ ...|+.
T Consensus 267 ~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 267 PQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp TT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC-
T ss_pred cc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCch
Confidence 32 66789999999999999999999999998763 34677777777777 345554
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.8e-15 Score=147.60 Aligned_cols=288 Identities=12% Similarity=-0.004 Sum_probs=213.4
Q ss_pred hhhhCChhHHHH-HHHHhhhcCCCCcch-hhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHH
Q 008265 123 SIREGRIDCVVG-VLKKLNELGVAPLEL-FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQL 200 (572)
Q Consensus 123 ~~~~g~~~~A~~-~~~~m~~~~~~p~~~-~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~ 200 (572)
+...|++++|++ .|++.... .|+.. .....+ ......+.+.|++++|+..|+++.+. .|.+...+..+...
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~--~~~~~~~~~~~~---~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~ 107 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQF--EEENPLRDHPQP---FEEGLRRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTT 107 (368)
T ss_dssp -----------CHHHHCCCCC--CSSCTTTTCSSH---HHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhHHHhc--CCCCcccchHHH---HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 345578899998 88876654 33221 111122 22222345589999999999999875 46677889999999
Q ss_pred HhcCCChHHHHHhhhcC----CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHH---------------
Q 008265 201 CVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRT--------------- 261 (572)
Q Consensus 201 ~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~--------------- 261 (572)
+...|++++|+..++.. |.+..++..+...+...|++++|.+.|+.+.+...... ..+..
T Consensus 108 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 186 (368)
T 1fch_A 108 QAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYA-HLVTPAEEGAGGAGLGPSKR 186 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTG-GGCC---------------C
T ss_pred HHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHhhhhcccHHHH
Confidence 99999999999988764 66678899999999999999999999999987643221 12211
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 008265 262 IIDVCGICGDYMKSRAIYEDLRSQNVTL-NIYVFNSLMNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAG 338 (572)
Q Consensus 262 ll~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 338 (572)
.+..+...|++++|...|+++.+..... +...+..+...+ .|++++|...++++.+... .+...+..+...+.+.|
T Consensus 187 ~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g 265 (368)
T 1fch_A 187 ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGN 265 (368)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHcC
Confidence 2444448899999999999998763221 466776666654 4899999999999987643 36788999999999999
Q ss_pred ChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCC----------chhhHHHHHHHH
Q 008265 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP----------NTITWSSLINAC 408 (572)
Q Consensus 339 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p----------~~~~~~~li~~~ 408 (572)
++++|...|+++.+. .+.+...+..+...|.+.|++++|...|+++.+..... ...+|..+..+|
T Consensus 266 ~~~~A~~~~~~al~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 340 (368)
T 1fch_A 266 QSEEAVAAYRRALEL-----QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLAL 340 (368)
T ss_dssp CHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHH
Confidence 999999999999874 24567799999999999999999999999987652211 157899999999
Q ss_pred HHcCCHHHHHHHHHHH
Q 008265 409 ANAGLVEQAMHLFEEM 424 (572)
Q Consensus 409 ~~~g~~~~a~~~~~~m 424 (572)
...|+.++|..++.+.
T Consensus 341 ~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 341 SMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHTCGGGHHHHHTTC
T ss_pred HHhCChHhHHHhHHHH
Confidence 9999999999887643
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.5e-15 Score=143.99 Aligned_cols=258 Identities=12% Similarity=-0.008 Sum_probs=200.9
Q ss_pred chHHHHHHHHhcCCChHHHHHhhhcC----CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q 008265 192 DEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCG 267 (572)
Q Consensus 192 ~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 267 (572)
..+..+...+.+.|++++|+.+|+.+ |.+..++..+...|.+.|++++|...|++..+.. +.+...|..+...|.
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYT 144 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34556666666666666666666553 4455788889999999999999999999988764 235788999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHH-H----------HHHHHHh--cCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHH
Q 008265 268 ICGDYMKSRAIYEDLRSQNVTLNIYV-F----------NSLMNVN--AHDLKFTLEVYKNMQKLGVM-ADMASYNILLKA 333 (572)
Q Consensus 268 ~~g~~~~a~~~~~~m~~~g~~p~~~~-~----------~~ll~~~--~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~ 333 (572)
..|++++|...|+++.+.. |+... + ..+...+ .|++++|...++++.+.... .+..++..+...
T Consensus 145 ~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 9999999999999988752 33211 1 1122222 36899999999999886433 268889999999
Q ss_pred HHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCC
Q 008265 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413 (572)
Q Consensus 334 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 413 (572)
|...|++++|...|+++.+. .+.+..+|..+..+|.+.|++++|+..|+++.+... .+..+|..+..+|.+.|+
T Consensus 223 ~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTV-----RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP-GFIRSRYNLGISCINLGA 296 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTC
T ss_pred HHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCC
Confidence 99999999999999999874 245678999999999999999999999999988632 247889999999999999
Q ss_pred HHHHHHHHHHHHHcCC---C--------CCHHHHHHHHHHHHHhCCHhHHHHHHHH
Q 008265 414 VEQAMHLFEEMLQAGC---E--------PNSQCCNILLQACVEACQFDRAFRLFRS 458 (572)
Q Consensus 414 ~~~a~~~~~~m~~~~~---~--------p~~~~~~~li~~~~~~g~~~~A~~~~~~ 458 (572)
+++|...|+++.+..- . .+..+|..+..++...|+.+.+.++..+
T Consensus 297 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 297 YREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999876420 1 1357899999999999999999888764
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.68 E-value=6.8e-13 Score=136.05 Aligned_cols=373 Identities=10% Similarity=0.009 Sum_probs=207.3
Q ss_pred hcccCCchhhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhh
Q 008265 62 TVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNE 141 (572)
Q Consensus 62 ~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~ 141 (572)
.+..+|.. ...|..++. +.+.|++++|..+|+.+.+..+ .. ...+...+..+.+.|++++|..+|++...
T Consensus 5 al~~~P~~-~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P--~~------~~~w~~~~~~~~~~~~~~~a~~~~~ral~ 74 (530)
T 2ooe_A 5 KLEENPYD-LDAWSILIR-EAQNQPIDKARKTYERLVAQFP--SS------GRFWKLYIEAEIKAKNYDKVEKLFQRCLM 74 (530)
T ss_dssp HHHHCTTC-HHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCT--TC------HHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HhhhCCCC-HHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCC--CC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 44556665 788999988 4788999999999999998743 32 44455566677788999999999999988
Q ss_pred cCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHH----HHHHHHh-CCCCCcccchHHHHHHHHhc---------CCCh
Q 008265 142 LGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVG----LMEVLEE-FRLPVKELDEEFRIVQLCVN---------KPDV 207 (572)
Q Consensus 142 ~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~----~~~~~~~-~~~~~~~~~~~~~ll~~~~~---------~g~~ 207 (572)
. .|+.. ++..++.... ...|+.+.|.+ +|+.... .|..+.+...|...+..... .|++
T Consensus 75 ~--~p~~~----lw~~~~~~~~--~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 146 (530)
T 2ooe_A 75 K--VLHID----LWKCYLSYVR--ETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRI 146 (530)
T ss_dssp T--CCCHH----HHHHHHHHHH--HHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHH
T ss_pred c--CCChH----HHHHHHHHHH--HHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHH
Confidence 6 46433 2222221111 12455555554 6666544 35556666667666665443 5677
Q ss_pred HHHHHhhhcCCC---ch--hHHHHHHHHH-------------HhcCCHHHHHHHHHHHH------hcC---CCCc-----
Q 008265 208 NLAIRYACIVPR---AD--ILFCNFVREF-------------GKKRDLVSALRAYDASK------KHL---SSPN----- 255 (572)
Q Consensus 208 ~~a~~~~~~~~~---~~--~~~~~li~~~-------------~~~g~~~~a~~~~~~m~------~~~---~~~~----- 255 (572)
+.|..+|+.... .. ..|....... .+.++++.|..++..+. +.. +.|+
T Consensus 147 ~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~ 226 (530)
T 2ooe_A 147 TAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQE 226 (530)
T ss_dssp HHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCH
T ss_pred HHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhH
Confidence 777777766322 11 2232222211 12344555655555421 111 1222
Q ss_pred ---HHHHHHHHHHHHhc----CCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHh---------cCChH-------HH
Q 008265 256 ---MYICRTIIDVCGIC----GDY----MKSRAIYEDLRSQNVTLNIYVFNSLMNVN---------AHDLK-------FT 308 (572)
Q Consensus 256 ---~~~~~~ll~~~~~~----g~~----~~a~~~~~~m~~~g~~p~~~~~~~ll~~~---------~~~~~-------~a 308 (572)
...|...+...... ++. +.+..+|++..... +-+...|......+ .|+.+ +|
T Consensus 227 ~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A 305 (530)
T 2ooe_A 227 AQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEA 305 (530)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHH
Confidence 23444444332221 121 35556666665541 12344444443332 35554 66
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccccHHHHHHHH
Q 008265 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD--VFTYSTIVKVFADAKWWQMALKVK 386 (572)
Q Consensus 309 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~ 386 (572)
..+|+...+.-.+-+...|..++..+.+.|++++|..+|+.+.+ ..|+ ...|..++..+.+.|++++|.++|
T Consensus 306 ~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~------~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~ 379 (530)
T 2ooe_A 306 ANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA------IEDIDPTLVYIQYMKFARRAEGIKSGRMIF 379 (530)
T ss_dssp HHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------SSSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC------ccccCchHHHHHHHHHHHHhcCHHHHHHHH
Confidence 66666665421222456666666666666777777777766665 2343 235666666666666677777777
Q ss_pred HHHHHCCCCCchhhHHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 387 EDMLSAGVTPNTITWSSLINA-CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 387 ~~m~~~g~~p~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
++..+.... +...|...... +...|+.++|..+|+...+.. +-+...|..++..+.+.|+.++|..+|++...
T Consensus 380 ~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~ 453 (530)
T 2ooe_A 380 KKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 453 (530)
T ss_dssp HHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHh
Confidence 666654211 11222211111 224666677777776666542 22456666666666666777777777666543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.9e-14 Score=137.66 Aligned_cols=256 Identities=8% Similarity=-0.082 Sum_probs=194.8
Q ss_pred HHHHHHhcCCChHHHHHhhhcC----CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC
Q 008265 196 RIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGD 271 (572)
Q Consensus 196 ~ll~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 271 (572)
.+...+...|++++|..+++.+ |.+...+..+...+...|++++|...|+.+.+.. +.+...+..+...|...|+
T Consensus 26 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~ 104 (327)
T 3cv0_A 26 EEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 104 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCC
Confidence 3344444444444444444332 3334667778888888899999999998887763 3367788888888999999
Q ss_pred HHHHHHHHHHHHhCCCCCCH-HHHHHH--------------H---HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008265 272 YMKSRAIYEDLRSQNVTLNI-YVFNSL--------------M---NVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKA 333 (572)
Q Consensus 272 ~~~a~~~~~~m~~~g~~p~~-~~~~~l--------------l---~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 333 (572)
+++|.+.|+++.+.. |+. ..+..+ . ....|++++|...++++.+.... +...+..+...
T Consensus 105 ~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~ 181 (327)
T 3cv0_A 105 ANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLGVL 181 (327)
T ss_dssp HHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 999999999888763 222 122221 1 11226789999999999876543 78889999999
Q ss_pred HHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCC
Q 008265 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413 (572)
Q Consensus 334 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 413 (572)
+.+.|++++|...++++.+. .+.+...+..+...+...|++++|.+.++++.+... .+...|..+...|...|+
T Consensus 182 ~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 182 YNLSNNYDSAAANLRRAVEL-----RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINP-GYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHhccHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcc
Confidence 99999999999999999874 244677899999999999999999999999887642 256789999999999999
Q ss_pred HHHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 414 VEQAMHLFEEMLQAGCEP-----------NSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 414 ~~~a~~~~~~m~~~~~~p-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
+++|.+.++++.+..... +..+|..+..++.+.|+.++|..++++..+
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 999999999998753221 467899999999999999999999876543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.67 E-value=8.7e-15 Score=142.61 Aligned_cols=252 Identities=13% Similarity=-0.003 Sum_probs=192.2
Q ss_pred CChHHHHHhhhcCCCch----hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008265 205 PDVNLAIRYACIVPRAD----ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280 (572)
Q Consensus 205 g~~~~a~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 280 (572)
+....+...+...+.+. ..+..+...+.+.|++++|.++|+.+.+... .+...|..+...|.+.|++++|...|+
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~ 123 (365)
T 4eqf_A 45 VTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQ 123 (365)
T ss_dssp --------CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhhHHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 33444555555444443 4488899999999999999999999988643 468899999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHhc--CChHHHHHHHHHHHHcCCC---------CCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008265 281 DLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVM---------ADMASYNILLKACCLAGNTVLAQEIYGE 349 (572)
Q Consensus 281 ~m~~~g~~p~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~~~~---------~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 349 (572)
+..+.. +.+...|..+..++. |++++|...++++.+.... .....+..+...+.+.|++++|...|++
T Consensus 124 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 202 (365)
T 4eqf_A 124 RCLELQ-PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLE 202 (365)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHH
T ss_pred HHHhcC-CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 998763 234667777766654 8999999999999874311 0122334557889999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 008265 350 VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429 (572)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 429 (572)
+.+.. . ...+..++..+...|...|++++|++.|+++.+... .+..+|..+..+|...|++++|...|+++.+..
T Consensus 203 al~~~--p-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~- 277 (365)
T 4eqf_A 203 AAHQN--G-DMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ- 277 (365)
T ss_dssp HHHHS--C-SSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHhC--c-CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence 98842 1 112688999999999999999999999999988643 367889999999999999999999999998874
Q ss_pred CCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhcc
Q 008265 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463 (572)
Q Consensus 430 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 463 (572)
+.+..++..+..+|.+.|++++|...|++..+..
T Consensus 278 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 311 (365)
T 4eqf_A 278 PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQ 311 (365)
T ss_dssp TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 4458899999999999999999999999987643
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.66 E-value=2e-12 Score=138.12 Aligned_cols=374 Identities=13% Similarity=0.125 Sum_probs=248.0
Q ss_pred HHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhh
Q 008265 75 ADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSG 154 (572)
Q Consensus 75 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ 154 (572)
...+.+|+..|.+.+|+++++.+.-. |+.|+..-.. .+.++....+. +..+..++..++... ..++
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~---~s~fs~n~~L--qnlLi~tAIka-D~~Rv~eyI~kLd~~-d~~e------- 1054 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLD---NSVFSEHRNL--QNLLILTAIKA-DRTRVMEYINRLDNY-DAPD------- 1054 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcC---CCcccccHHH--HHHHHHHHHHh-ChhhHHHHHHHhhhc-cHHH-------
Confidence 45566677778888888888877732 2222211112 22233333343 344444454444321 0110
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHh-cCCChHHHHHhhhcCCCchhHHHHHHHHHHh
Q 008265 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV-NKPDVNLAIRYACIVPRADILFCNFVREFGK 233 (572)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~ 233 (572)
+.. .+...|.+++|..+|++.. .+...+..+. ..+++++|.++.+++.. ..+|..+..++.+
T Consensus 1055 ---IA~---Iai~lglyEEAf~IYkKa~----------~~~~A~~VLie~i~nldrAiE~Aervn~-p~vWsqLAKAql~ 1117 (1630)
T 1xi4_A 1055 ---IAN---IAISNELFEEAFAIFRKFD----------VNTSAVQVLIEHIGNLDRAYEFAERCNE-PAVWSQLAKAQLQ 1117 (1630)
T ss_pred ---HHH---HHHhCCCHHHHHHHHHHcC----------CHHHHHHHHHHHHhhHHHHHHHHHhcCC-HHHHHHHHHHHHh
Confidence 111 1233688888888888752 1111122223 67788888888877633 5788899999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc--CChHHHHHH
Q 008265 234 KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEV 311 (572)
Q Consensus 234 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~a~~~ 311 (572)
.|++++|.+.|.+. -|...|..++.++.+.|++++|.+.|...++..-.|...+ .+..+|+ +++++....
T Consensus 1118 ~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt--~LafaYAKl~rleele~f 1189 (1630)
T 1xi4_A 1118 KGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVET--ELIFALAKTNRLAELEEF 1189 (1630)
T ss_pred CCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccH--HHHHHHHhhcCHHHHHHH
Confidence 99999999988653 3677888889999999999999999988776542222333 3555554 455543222
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHH
Q 008265 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391 (572)
Q Consensus 312 ~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 391 (572)
.+ .++...+..+...|...|++++|..+|... ..|..+..+|++.|++++|.+.+++..
T Consensus 1190 ----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-------------~ny~rLA~tLvkLge~q~AIEaarKA~- 1248 (1630)
T 1xi4_A 1190 ----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------------SNFGRLASTLVHLGEYQAAVDGARKAN- 1248 (1630)
T ss_pred ----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-------------hHHHHHHHHHHHhCCHHHHHHHHHHhC-
Confidence 22 345667777888888999999999998763 378888899999999999999998763
Q ss_pred CCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhcccccccccc
Q 008265 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED 471 (572)
Q Consensus 392 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 471 (572)
+..+|.-+-.+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++.-....
T Consensus 1249 -----n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-------- 1310 (1630)
T 1xi4_A 1249 -----STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-------- 1310 (1630)
T ss_pred -----CHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--------
Confidence 6688888888898888888888766542 3456667788999999999999999997654211
Q ss_pred cCCchHHHHhhhhhccccccCCCCcccCCccchhhhhcCCCCCHHHHHHHHHHHhh-cH---HHHHHHHHHHHhCCCCC-
Q 008265 472 YDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT-DY---YRVKALMNEMRTVGLSP- 546 (572)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~a~~~-~~---~~a~~~~~~m~~~g~~p- 546 (572)
......|+-|-..|++ .. .++.++|..- -.++|
T Consensus 1311 ----------------------------------------raH~gmftELaiLyaKy~peklmEhlk~f~~r--ini~k~ 1348 (1630)
T 1xi4_A 1311 ----------------------------------------RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKV 1348 (1630)
T ss_pred ----------------------------------------hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHh--cccchH
Confidence 1244566667677776 33 3444444422 12333
Q ss_pred -----CHHHHHHHHHHHHccCCccccc
Q 008265 547 -----NHISWTILIDACGGSGNVEGAL 568 (572)
Q Consensus 547 -----~~~~~~~l~~~~~~~g~~~~a~ 568 (572)
+...|.-++-.|.+.|+++.|.
T Consensus 1349 ~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1349 LRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred hHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 4567999999999999999887
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.66 E-value=6.1e-16 Score=148.04 Aligned_cols=235 Identities=13% Similarity=0.100 Sum_probs=59.5
Q ss_pred hhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 008265 167 DSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDA 246 (572)
Q Consensus 167 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 246 (572)
+.|++++|.+.++++. ....|..++.++.+.|++++|++.|.+.+ +...|..++..+...|++++|..+++.
T Consensus 15 ~~~~ld~A~~fae~~~-------~~~vWs~La~A~l~~g~~~eAIdsfika~-D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIKAD-DPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHcCC-CHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4677888888888762 12467788888888888888888776653 334777777777777888888876666
Q ss_pred HHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc--CChHHHHHHHHHHHHcCCCCCH
Q 008265 247 SKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADM 324 (572)
Q Consensus 247 m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~~~~~~~ 324 (572)
.++. .++..+.+.++.+|.+.|+++++.++++ .|+..+|..+...+. |.+++|...|..+
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------- 148 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------- 148 (449)
T ss_dssp ------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------
Confidence 5553 3445667777778888887777776663 144444444444433 4455555555543
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHH
Q 008265 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404 (572)
Q Consensus 325 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 404 (572)
..|..+..++.+.|++++|.+.+.++. ++.+|..++.+|...|+++.|......+. ..|+. ...+
T Consensus 149 ~n~~~LA~~L~~Lg~yq~AVea~~KA~----------~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~ad~--l~~l 213 (449)
T 1b89_A 149 SNFGRLASTLVHLGEYQAAVDGARKAN----------STRTWKEVCFACVDGKEFRLAQMCGLHIV---VHADE--LEEL 213 (449)
T ss_dssp TCHHHHHHHHHTTTCHHHHHHHHHHHT----------CHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCHHH--HHHH
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHcC----------CchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCHhh--HHHH
Confidence 134555555555555555555554431 34455555555555555555533332211 11221 2234
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008265 405 INACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443 (572)
Q Consensus 405 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 443 (572)
+..|.+.|++++|..+++...... +-....|+-+--+|
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~ 251 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILY 251 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHH
Confidence 445555555555555555544332 22334444443333
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-11 Score=124.85 Aligned_cols=350 Identities=12% Similarity=0.008 Sum_probs=270.2
Q ss_pred hhHHHHHHHhHhh----cCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhh----hCChhHHHHHHHHhhhc
Q 008265 71 NDYYADMASKLAK----DGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIR----EGRIDCVVGVLKKLNEL 142 (572)
Q Consensus 71 ~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~m~~~ 142 (572)
...+..+...+.. .+++++|+..|+...+.|.. .++..+...|.. .+++++|+..|++..+.
T Consensus 39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~----------~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 108 (490)
T 2xm6_A 39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYT----------PAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK 108 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 4667777777777 89999999999999877532 223334444555 88999999999999886
Q ss_pred CCCCcchhhhhhhHHHHHHHHH-HhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhc----CCChHHHHHhhhcC
Q 008265 143 GVAPLELFDGSGFKLLKNECQR-LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVN----KPDVNLAIRYACIV 217 (572)
Q Consensus 143 ~~~p~~~~~~~~~~~l~~~~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~ 217 (572)
| .++ ....+-..+.. ..-.+++++|+..|++..+.+ +...+..+...|.. .++.++|.+.|+..
T Consensus 109 ~-~~~------a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a 177 (490)
T 2xm6_A 109 G-LPQ------AQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG----RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKA 177 (490)
T ss_dssp T-CHH------HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred C-CHH------HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 5 221 22222221111 011579999999999988765 34567778888887 78999999999875
Q ss_pred --CCchhHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCC
Q 008265 218 --PRADILFCNFVREFGK----KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGI----CGDYMKSRAIYEDLRSQNV 287 (572)
Q Consensus 218 --~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~ 287 (572)
..+...+..+...|.. .++.++|.++|+...+.| +...+..+...|.. .+++++|...|++..+.|.
T Consensus 178 ~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~ 254 (490)
T 2xm6_A 178 AEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGN 254 (490)
T ss_dssp HHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTC
T ss_pred HHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 2345778888888888 899999999999998864 56677788888876 7899999999999988753
Q ss_pred CCCHHHHHHH--HHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHHHHh
Q 008265 288 TLNIYVFNSL--MNVN----AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA-----GNTVLAQEIYGEVKHLEAK 356 (572)
Q Consensus 288 ~p~~~~~~~l--l~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~ 356 (572)
...+..+ +... .++.++|...|++..+.| +...+..+...|... ++.++|...|++..+.
T Consensus 255 ---~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--- 325 (490)
T 2xm6_A 255 ---SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--- 325 (490)
T ss_dssp ---HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT---
T ss_pred ---HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc---
Confidence 2333222 2222 478999999999998764 566777888888887 8999999999998862
Q ss_pred CCCCCCHHHHHHHHHHHHccc---cHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHH----cCCHHHHHHHHHHHHHcCC
Q 008265 357 GVLKLDVFTYSTIVKVFADAK---WWQMALKVKEDMLSAGVTPNTITWSSLINACAN----AGLVEQAMHLFEEMLQAGC 429 (572)
Q Consensus 357 ~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~ 429 (572)
-+...+..+...|...| ++++|++.|++..+.| +...+..+...|.. .++.++|.+.|++..+.|
T Consensus 326 ----~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~- 397 (490)
T 2xm6_A 326 ----GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG- 397 (490)
T ss_dssp ----TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred ----CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC-
Confidence 25567777877887755 8999999999999873 66788888999988 899999999999999876
Q ss_pred CCCHHHHHHHHHHHHH----hCCHhHHHHHHHHhhhcc
Q 008265 430 EPNSQCCNILLQACVE----ACQFDRAFRLFRSWTLSK 463 (572)
Q Consensus 430 ~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 463 (572)
+...+..|...|.+ .++.++|...|++..+.+
T Consensus 398 --~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 398 --LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 57788888888888 899999999999987654
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.65 E-value=8.5e-14 Score=130.32 Aligned_cols=251 Identities=8% Similarity=0.023 Sum_probs=142.2
Q ss_pred HhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHH
Q 008265 79 SKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLL 158 (572)
Q Consensus 79 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l 158 (572)
+..-..|++..|+..++..... .|+. ..+....+.+.|...|+++.|+..++.. .|. ....+..+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~-----~~e~~~~l~r~yi~~g~~~~al~~~~~~-----~~~---~~~a~~~l 71 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS--SPER-----DVERDVFLYRAYLAQRKYGVVLDEIKPS-----SAP---ELQAVRMF 71 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC--SHHH-----HHHHHHHHHHHHHHTTCHHHHHHHSCTT-----SCH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccC--Cchh-----hHHHHHHHHHHHHHCCCHHHHHHHhccc-----CCh---hHHHHHHH
Confidence 4455678889999888765443 3432 1223334567888999999888766441 221 12244444
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHH
Q 008265 159 KNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLV 238 (572)
Q Consensus 159 ~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~ 238 (572)
... +...++.++|++.++++...+..|.+...+..+..++...|++++|++.++. +.+...+..++..+.+.|+++
T Consensus 72 a~~---~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-~~~~~~~~~l~~~~~~~g~~~ 147 (291)
T 3mkr_A 72 AEY---LASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-GDSLECMAMTVQILLKLDRLD 147 (291)
T ss_dssp HHH---HHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-CCSHHHHHHHHHHHHHTTCHH
T ss_pred HHH---HcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHH
Confidence 332 3447889999999998887766677766666667777777777777777776 555566666677777777777
Q ss_pred HHHHHHHHHHhcCCCCcHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh--cCChHHHHHHHH
Q 008265 239 SALRAYDASKKHLSSPNMYIC---RTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLEVYK 313 (572)
Q Consensus 239 ~a~~~~~~m~~~~~~~~~~~~---~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~~~~a~~~~~ 313 (572)
+|.+.|+.+.+.. |+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++ .|++++|...|+
T Consensus 148 ~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~ 224 (291)
T 3mkr_A 148 LARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQ 224 (291)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7777777766643 332111 12223333345666666666666554 122333343333332 244555555555
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCChHH-HHHHHHHHHH
Q 008265 314 NMQKLGVMADMASYNILLKACCLAGNTVL-AQEIYGEVKH 352 (572)
Q Consensus 314 ~m~~~~~~~~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~ 352 (572)
+..+.... +..++..++..+...|+.++ +.++++++.+
T Consensus 225 ~al~~~p~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 225 EALDKDSG-HPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 54443221 34444444444444454433 3344444443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.64 E-value=9e-14 Score=130.13 Aligned_cols=219 Identities=12% Similarity=0.081 Sum_probs=108.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HH--hcC
Q 008265 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM-NV--NAH 303 (572)
Q Consensus 227 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll-~~--~~~ 303 (572)
+.++|...|+++.|...++. .-.|+..++..+...+...|+.++|++.++++...+..|+...+...+ .. ..|
T Consensus 40 l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g 115 (291)
T 3mkr_A 40 LYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQ 115 (291)
T ss_dssp HHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCC
Confidence 34455555555555443322 122344444555555555555555555555555444333322222221 11 224
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHccccHH
Q 008265 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT---YSTIVKVFADAKWWQ 380 (572)
Q Consensus 304 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~ 380 (572)
++++|+..+++ ..+...+..+...+.+.|++++|.+.|+.+.+. .|+... ....+..+...|+++
T Consensus 116 ~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~------~p~~~~~~l~~a~~~l~~~~~~~~ 183 (291)
T 3mkr_A 116 NPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ------DEDATLTQLATAWVSLAAGGEKLQ 183 (291)
T ss_dssp CHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHCTTHHH
T ss_pred CHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh------CcCcHHHHHHHHHHHHHhCchHHH
Confidence 55555555544 234555555566666666666666666666542 233211 111223333345666
Q ss_pred HHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhH-HHHHHHHh
Q 008265 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR-AFRLFRSW 459 (572)
Q Consensus 381 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m 459 (572)
+|..+|+++.+.. +.+...|+.+..++.+.|++++|...|++..+.. +-+..++..++..+...|+.++ +.++++++
T Consensus 184 eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~ 261 (291)
T 3mkr_A 184 DAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQL 261 (291)
T ss_dssp HHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 6666666665542 2344555666666666666666666666655542 3345555566666666666543 44555555
Q ss_pred hhcc
Q 008265 460 TLSK 463 (572)
Q Consensus 460 ~~~~ 463 (572)
.+.+
T Consensus 262 ~~~~ 265 (291)
T 3mkr_A 262 KDAH 265 (291)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 5443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.60 E-value=2.3e-13 Score=130.06 Aligned_cols=251 Identities=10% Similarity=0.026 Sum_probs=202.4
Q ss_pred HHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcC----CCchhHHHHHHHHHHhcCCHHH
Q 008265 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVS 239 (572)
Q Consensus 164 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~ 239 (572)
.+...|++++|+.+|+++.+. .|.+...+..+...+...|++++|...++.+ |.+..++..+...+...|++++
T Consensus 30 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~ 107 (327)
T 3cv0_A 30 SMLKLANLAEAALAFEAVCQA--APEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANA 107 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHH
Confidence 345589999999999998875 4667778889999999999999999988764 5666889999999999999999
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh--c
Q 008265 240 ALRAYDASKKHLSSPNMYICRTI--------------ID-VCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--A 302 (572)
Q Consensus 240 a~~~~~~m~~~~~~~~~~~~~~l--------------l~-~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~--~ 302 (572)
|.+.++.+.+.... +...+..+ .. .+...|++++|.+.++++.+.. +.+...+..+...+ .
T Consensus 108 A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 185 (327)
T 3cv0_A 108 ALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLS 185 (327)
T ss_dssp HHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHh
Confidence 99999999875322 22222222 22 3778899999999999998763 23556666665554 4
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHH
Q 008265 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382 (572)
Q Consensus 303 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 382 (572)
|++++|...++++.+... .+..++..+...+...|++++|...|+++.+. .+.+...+..+...|.+.|++++|
T Consensus 186 ~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~l~~~~~~~g~~~~A 259 (327)
T 3cv0_A 186 NNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDI-----NPGYVRVMYNMAVSYSNMSQYDLA 259 (327)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHhccHHHH
Confidence 899999999999987653 36788999999999999999999999999874 244677899999999999999999
Q ss_pred HHHHHHHHHCCCCC-----------chhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 008265 383 LKVKEDMLSAGVTP-----------NTITWSSLINACANAGLVEQAMHLFEEM 424 (572)
Q Consensus 383 ~~~~~~m~~~g~~p-----------~~~~~~~li~~~~~~g~~~~a~~~~~~m 424 (572)
.+.++++.+..... +...|..+..++.+.|+.++|..++++.
T Consensus 260 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 260 AKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999988763221 4678999999999999999999998754
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.7e-12 Score=131.02 Aligned_cols=372 Identities=10% Similarity=-0.048 Sum_probs=232.3
Q ss_pred hhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcC--ChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcC---C
Q 008265 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEG--NVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELG---V 144 (572)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~---~ 144 (572)
....|+.+...+...|++++|++.|++..+... .++.. ..-...++.++...|...|++++|...+++..+.. .
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~-~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQA-EIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGC-TTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCcccc-chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 367899999999999999999999998765310 00000 00013456777888999999999999998876541 1
Q ss_pred CCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHH---HhcCCChHHHHHhhhc----C
Q 008265 145 APLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQL---CVNKPDVNLAIRYACI----V 217 (572)
Q Consensus 145 ~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~g~~~~a~~~~~~----~ 217 (572)
.+.......++...-.+... ...+++++|+..|++..+. .|++...+..+..+ +...++.++|++.++. -
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~-~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLK-CGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHH-HCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred cccchhhHHHHHHHHHHHHH-HccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 11111011122111111111 1246899999999998875 46666666655544 3445677777776654 3
Q ss_pred CCchhHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HH
Q 008265 218 PRADILFCNFVREFGK----KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN-IY 292 (572)
Q Consensus 218 ~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~ 292 (572)
|.+..++..+...+.. .|++++|.+++++..+... .+...+..+...|.+.|++++|...|++..+. .|+ ..
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~ 282 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAY 282 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHH
Confidence 5555666666655554 4678899999998877643 46678899999999999999999999999876 344 44
Q ss_pred HHHHHHHHhc---------------------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008265 293 VFNSLMNVNA---------------------HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351 (572)
Q Consensus 293 ~~~~ll~~~~---------------------~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 351 (572)
.+..+-.++. +..+.|...+.+..+.... +..++..+...|...|++++|+..|++..
T Consensus 283 ~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL 361 (472)
T 4g1t_A 283 LHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEF 361 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHH
Confidence 4443332221 1356677777777665432 45567788889999999999999999987
Q ss_pred HHHHhCCCCCCHHH----HHHHHH-HHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008265 352 HLEAKGVLKLDVFT----YSTIVK-VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426 (572)
Q Consensus 352 ~~~~~~~~~~~~~~----~~~li~-~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 426 (572)
. ..|+... +..+.. .....|+.++|+..|.+..+. .|+...... ....+.++++...+
T Consensus 362 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~l~~~~~~~l~ 424 (472)
T 4g1t_A 362 S------KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDKLQKIAKMRLS 424 (472)
T ss_dssp H------SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHHHHHHHHHHHH
T ss_pred h------cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHHHHHHHHHHHH
Confidence 6 3344322 222222 245678999999999998876 454433222 22344555666555
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhcccccc
Q 008265 427 AGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVA 467 (572)
Q Consensus 427 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 467 (572)
.. +.+..+|..+...|...|++++|.+.|++..+.+...+
T Consensus 425 ~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p 464 (472)
T 4g1t_A 425 KN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIP 464 (472)
T ss_dssp HC-C-CTTHHHHHHHHHHHHHHCC-----------------
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 43 55678899999999999999999999999887665443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.58 E-value=5.9e-15 Score=141.29 Aligned_cols=204 Identities=12% Similarity=0.145 Sum_probs=62.6
Q ss_pred hhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCc---hhHHHHHHHHHHhcCCHHHHHHHH
Q 008265 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRA---DILFCNFVREFGKKRDLVSALRAY 244 (572)
Q Consensus 168 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~ 244 (572)
.|++++|++.|.+. ++...|..++.++...|++++|+++++...++ ..+.+.++.+|.+.|+++++.+++
T Consensus 45 ~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~ 117 (449)
T 1b89_A 45 KGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI 117 (449)
T ss_dssp -----------------------------------------------------------------------CHHHHTTTT
T ss_pred cCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHH
Confidence 45555555555431 23344555555555556666555555443222 144555555666666655555555
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc--CChHHHHHHHHHHHHcCCCC
Q 008265 245 DASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMA 322 (572)
Q Consensus 245 ~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~~~~~ 322 (572)
+ .|+..+|+.+...|...|.+++|..+|..+ ..|..+..++. |++++|.+.+.++ .
T Consensus 118 ~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~ 175 (449)
T 1b89_A 118 N-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------N 175 (449)
T ss_dssp T-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------T
T ss_pred c-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------C
Confidence 3 144445555556666666666666665544 23444444432 5555555555555 1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHH
Q 008265 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (572)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 402 (572)
++.+|..++.+|...|+++.|......+. .+..-...++..|.+.|++++|..+++...... +-....|+
T Consensus 176 ~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---------~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ft 245 (449)
T 1b89_A 176 STRTWKEVCFACVDGKEFRLAQMCGLHIV---------VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFT 245 (449)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHTTTTTT---------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHH
T ss_pred CchhHHHHHHHHHHcCcHHHHHHHHHHHH---------hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHH
Confidence 45555556666666666655543333211 122223345555555566666655555554332 22334455
Q ss_pred HHHHHHHH
Q 008265 403 SLINACAN 410 (572)
Q Consensus 403 ~li~~~~~ 410 (572)
-|.-.|++
T Consensus 246 el~il~~k 253 (449)
T 1b89_A 246 ELAILYSK 253 (449)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 45444444
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.7e-10 Score=115.48 Aligned_cols=300 Identities=13% Similarity=0.064 Sum_probs=237.6
Q ss_pred hCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhh----hhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHH
Q 008265 126 EGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLD----SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLC 201 (572)
Q Consensus 126 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~ 201 (572)
.+++++|+..|++..+.|..+ ....+-. .+.. .++.++|+..|++..+.+ +...+..|...|
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~-------a~~~Lg~---~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y 121 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTP-------AEYVLGL---RYMNGEGVPQDYAQAVIWYKKAALKG----LPQAQQNLGVMY 121 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHH-------HHHHHHH---HHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHCCCHH-------HHHHHHH---HHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHH
Confidence 789999999999988764221 2222222 1223 689999999999988764 345677788888
Q ss_pred hc----CCChHHHHHhhhcC--CCchhHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh---
Q 008265 202 VN----KPDVNLAIRYACIV--PRADILFCNFVREFGK----KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGI--- 268 (572)
Q Consensus 202 ~~----~g~~~~a~~~~~~~--~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--- 268 (572)
.. .+++++|.+.|+.. ..+...+..|...|.. .+++++|.+.|+...+.| +...+..+...|..
T Consensus 122 ~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g 198 (490)
T 2xm6_A 122 HEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLG 198 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSS
T ss_pred HcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCC
Confidence 88 88999999999875 3344677778888887 889999999999998864 67788888888888
Q ss_pred -cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh------cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----c
Q 008265 269 -CGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN------AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL----A 337 (572)
Q Consensus 269 -~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~------~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~ 337 (572)
.++.++|.+.|++..+.| +...+..+-..+ .++.++|...|++..+.| +...+..+...|.. .
T Consensus 199 ~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~ 272 (490)
T 2xm6_A 199 VERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGA 272 (490)
T ss_dssp SCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSS
T ss_pred CCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCC
Confidence 899999999999999876 334444443332 468999999999998764 56677777778887 8
Q ss_pred CChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc-----ccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcC
Q 008265 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA-----KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412 (572)
Q Consensus 338 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 412 (572)
++.++|...|+...+ .-+...+..+...|... +++++|+..+++..+.| +...+..+...|...|
T Consensus 273 ~d~~~A~~~~~~a~~-------~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g 342 (490)
T 2xm6_A 273 KEPLKALEWYRKSAE-------QGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLG 342 (490)
T ss_dssp CCHHHHHHHHHHHHT-------TTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCC
Confidence 999999999999875 23566777788888877 89999999999999875 4566777888887766
Q ss_pred ---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----hCCHhHHHHHHHHhhh
Q 008265 413 ---LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE----ACQFDRAFRLFRSWTL 461 (572)
Q Consensus 413 ---~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~ 461 (572)
+.++|.++|++..+.| +...+..+...|.. .++.++|.+.|++..+
T Consensus 343 ~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 343 SEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395 (490)
T ss_dssp CHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence 7899999999998874 67788888888988 8999999999998765
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.55 E-value=6.8e-11 Score=121.14 Aligned_cols=380 Identities=12% Similarity=0.028 Sum_probs=253.6
Q ss_pred hhhhcccCCchhhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHH----
Q 008265 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVG---- 134 (572)
Q Consensus 59 ~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~---- 134 (572)
+-+.+...|.. ...|...+..+.+.|++++|..+|++.+...+.++-|. .+... .....|+++.|.+
T Consensus 35 ~e~al~~~P~~-~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~------~~~~~--~~~~~~~~~~a~~~~~~ 105 (530)
T 2ooe_A 35 YERLVAQFPSS-GRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWK------CYLSY--VRETKGKLPSYKEKMAQ 105 (530)
T ss_dssp HHHHHTTCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHH------HHHHH--HHHHTTTSTTHHHHHHH
T ss_pred HHHHHHHCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHH------HHHHH--HHHHccchhhHHHHHHH
Confidence 44445566765 78999999999999999999999999998865433221 12111 1123466766665
Q ss_pred HHHHhhhc-CCCCcchhhhhhhHHHHHHHHH------HhhhhhHHHHHHHHHHHHhCCCCCccc--chHHHHHHH---H-
Q 008265 135 VLKKLNEL-GVAPLELFDGSGFKLLKNECQR------LLDSGEVEMFVGLMEVLEEFRLPVKEL--DEEFRIVQL---C- 201 (572)
Q Consensus 135 ~~~~m~~~-~~~p~~~~~~~~~~~l~~~~~~------~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~ll~~---~- 201 (572)
+|++.... |..|+.. ..+..++..... +.+.|+++.|..+|++..+. |... ..|...... +
T Consensus 106 ~~~~al~~~g~~~~~~---~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~~~~~~~~~~~~~e~~~~ 179 (530)
T 2ooe_A 106 AYDFALDKIGMEIMSY---QIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMINIEQLWRDYNKYEEGIN 179 (530)
T ss_dssp HHHHHHHHTTTSTTCH---HHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCCcccH---HHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhhhHHHHHHHHHHHHHhhc
Confidence 67666543 5555421 122223221111 01268999999999998872 2221 223221111 0
Q ss_pred ---------hcCCChHHHHHhhhc--------------CCCc--------hhHHHHHHHHHHhc----CCH----HHHHH
Q 008265 202 ---------VNKPDVNLAIRYACI--------------VPRA--------DILFCNFVREFGKK----RDL----VSALR 242 (572)
Q Consensus 202 ---------~~~g~~~~a~~~~~~--------------~~~~--------~~~~~~li~~~~~~----g~~----~~a~~ 242 (572)
...+++..|..++.. +++. ...|...+...... ++. +.+..
T Consensus 180 ~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~ 259 (530)
T 2ooe_A 180 IHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMF 259 (530)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHH
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHH
Confidence 123456666654332 2332 13455555443322 232 47778
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhCCCCCCHHHHHHHHHHh--cCChH
Q 008265 243 AYDASKKHLSSPNMYICRTIIDVCGI-------CGDYM-------KSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDLK 306 (572)
Q Consensus 243 ~~~~m~~~~~~~~~~~~~~ll~~~~~-------~g~~~-------~a~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~~~ 306 (572)
+|++..... +-+...|......+.+ .|+++ +|.++|++..+.-.+-+...|..+...+ .|+++
T Consensus 260 ~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~ 338 (530)
T 2ooe_A 260 AYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYE 338 (530)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHH
Confidence 898887752 3367788888888775 79987 8999999998632233466777666654 48999
Q ss_pred HHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCC-HHHHHHHHH-HHHccccHHHH
Q 008265 307 FTLEVYKNMQKLGVMAD--MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTIVK-VFADAKWWQMA 382 (572)
Q Consensus 307 ~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~li~-~~~~~g~~~~a 382 (572)
+|..+|+++.+. .|+ ...|...+..+.+.|++++|.++|+...+. .|+ ...|..... .+...|+.++|
T Consensus 339 ~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~------~~~~~~~~~~~a~~~~~~~~~~~~A 410 (530)
T 2ooe_A 339 KVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED------ARTRHHVYVTAALMEYYCSKDKSVA 410 (530)
T ss_dssp HHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------TTCCTHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc------cCCchHHHHHHHHHHHHHcCChhHH
Confidence 999999999985 343 357888889899999999999999999862 232 223322222 23468999999
Q ss_pred HHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHHhCCHhHHHHHHHHh
Q 008265 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG-CEP--NSQCCNILLQACVEACQFDRAFRLFRSW 459 (572)
Q Consensus 383 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (572)
..+|+...+... -+...|..++..+.+.|+.++|..+|++....+ ..| ....|...+....+.|+.+.+..+++++
T Consensus 411 ~~~~e~al~~~p-~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 411 FKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC-CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999887632 256889999999999999999999999998863 233 2557888888888899999999999988
Q ss_pred hhcc
Q 008265 460 TLSK 463 (572)
Q Consensus 460 ~~~~ 463 (572)
.+..
T Consensus 490 ~~~~ 493 (530)
T 2ooe_A 490 FTAF 493 (530)
T ss_dssp HHHT
T ss_pred HHHC
Confidence 7643
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.8e-11 Score=122.14 Aligned_cols=296 Identities=12% Similarity=-0.057 Sum_probs=204.9
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHHHhC-------CCCCcccchHHHHHHHHhcCCChHHHHHhhhcC---------
Q 008265 154 GFKLLKNECQRLLDSGEVEMFVGLMEVLEEF-------RLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV--------- 217 (572)
Q Consensus 154 ~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~--------- 217 (572)
.++.+-..+. ..|+.++|++.|++..+. ...+....+|+.+..+|...|++++|...++..
T Consensus 53 ~yn~Lg~~~~---~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 53 MCNLLAYLKH---LKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp HHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHH---HCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4555544333 379999999999876542 124555678899999999999999999887653
Q ss_pred ---CCchhHHHHHHHHHHhc--CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHH---HHhcCCHHHHHHHHHHHHhCCCCC
Q 008265 218 ---PRADILFCNFVREFGKK--RDLVSALRAYDASKKHLSSPNMYICRTIIDV---CGICGDYMKSRAIYEDLRSQNVTL 289 (572)
Q Consensus 218 ---~~~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~---~~~~g~~~~a~~~~~~m~~~g~~p 289 (572)
+....++..+..++.+. +++++|.+.|++..+..+. +...+..+..+ +...++.++|++.|++..+.. +.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~ 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence 12235666666666554 5799999999998875432 34444444433 456688889999998887653 22
Q ss_pred CHHHHHHHHHH------hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCH
Q 008265 290 NIYVFNSLMNV------NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV 363 (572)
Q Consensus 290 ~~~~~~~ll~~------~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 363 (572)
+...+..+... ..++.++|...+++....... +...+..+...|...|++++|...+++..+. .+-+.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~ 281 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEY-----IPNNA 281 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHh-----CCChH
Confidence 34444433322 125788999999998876543 6778889999999999999999999999874 23455
Q ss_pred HHHHHHHHHHHc-------------------cccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 008265 364 FTYSTIVKVFAD-------------------AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424 (572)
Q Consensus 364 ~~~~~li~~~~~-------------------~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 424 (572)
.++..+...|.. .+..+.|...+++..+... .+...+..+...|...|++++|.+.|++.
T Consensus 282 ~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~ka 360 (472)
T 4g1t_A 282 YLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKE 360 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHH
Confidence 667666665543 2346778888888776532 25577888999999999999999999999
Q ss_pred HHcCCCCCHH--HHHHHHH-HHHHhCCHhHHHHHHHHhhh
Q 008265 425 LQAGCEPNSQ--CCNILLQ-ACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 425 ~~~~~~p~~~--~~~~li~-~~~~~g~~~~A~~~~~~m~~ 461 (572)
.+....+... .+..+.. ...+.|+.++|...|++..+
T Consensus 361 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~ 400 (472)
T 4g1t_A 361 FSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK 400 (472)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 8864333221 2222222 23467899999999988764
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.53 E-value=2.3e-10 Score=122.66 Aligned_cols=333 Identities=9% Similarity=0.020 Sum_probs=239.4
Q ss_pred HhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHH-HHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchH
Q 008265 116 VASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKL-LKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEE 194 (572)
Q Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~-l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 194 (572)
....++.|...|.+.+|+++|++.... |+.+..+..+.. ++.+..+ . +..+..+..+.+.. ...
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~---~s~fs~n~~LqnlLi~tAIk-a---D~~Rv~eyI~kLd~--------~d~ 1052 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLD---NSVFSEHRNLQNLLILTAIK-A---DRTRVMEYINRLDN--------YDA 1052 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcC---CCcccccHHHHHHHHHHHHH-h---ChhhHHHHHHHhhh--------ccH
Confidence 345677888999999999999998843 443333333333 3332222 2 33444444444321 113
Q ss_pred HHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHH
Q 008265 195 FRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMK 274 (572)
Q Consensus 195 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 274 (572)
..+...+...|.+++|..+|++........+.++. ..|++++|.++.++.. +..+|..+..++.+.|++++
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kE 1123 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKE 1123 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHH
Confidence 44788889999999999999998654444455544 6788999999988652 46789999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhc--CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008265 275 SRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (572)
Q Consensus 275 a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 352 (572)
|.+.|.+. -|...|..++.++. |++++|.+.+....+.. ++....+.++.+|++.+++++..... .
T Consensus 1124 AIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~ 1191 (1630)
T 1xi4_A 1124 AIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N 1191 (1630)
T ss_pred HHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h
Confidence 99999664 36677777777654 89999999998877654 33333445888999999888644332 1
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 008265 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432 (572)
Q Consensus 353 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 432 (572)
.++...|..+...|...|++++|...|... ..|..+..+|.+.|++++|.+.+++. -+
T Consensus 1192 -------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n 1249 (1630)
T 1xi4_A 1192 -------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NS 1249 (1630)
T ss_pred -------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CC
Confidence 356677778999999999999999999985 37999999999999999999999877 35
Q ss_pred HHHHHHHHHHHHHhCCHhHHHHHHHHhhhcccccccccccCCchHHHHhhhhhccccccCCCCcccCCccchhhhhcCCC
Q 008265 433 SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK 512 (572)
Q Consensus 433 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (572)
..+|..+-.+|...|+++.|......+ .
T Consensus 1250 ~~aWkev~~acve~~Ef~LA~~cgl~I----------------------------------------------------i 1277 (1630)
T 1xi4_A 1250 TRTWKEVCFACVDGKEFRLAQMCGLHI----------------------------------------------------V 1277 (1630)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhh----------------------------------------------------h
Confidence 688999999999999999998876432 3
Q ss_pred CCHHHHHHHHHHHhh--cHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHc
Q 008265 513 PTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNH-ISWTILIDACGG 560 (572)
Q Consensus 513 p~~~~~~~ll~a~~~--~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~ 560 (572)
.+...+..++..|.+ ..++|..+++.-.. +.|.. ..|.-|..+|++
T Consensus 1278 v~~deLeeli~yYe~~G~feEAI~LlE~aL~--LeraH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1278 VHADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSK 1326 (1630)
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cChhHhHHHHHHHHHHHh
Confidence 445566677888876 46899999876654 33332 355445555544
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.2e-12 Score=116.58 Aligned_cols=224 Identities=13% Similarity=0.033 Sum_probs=177.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCC----HHHHH
Q 008265 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN--VTLN----IYVFN 295 (572)
Q Consensus 222 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g--~~p~----~~~~~ 295 (572)
..+..+...+...|++++|...|+...+.. .+...|..+..+|...|++++|...|++..+.. ..++ ...+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 467778888888899999999998888776 677888888888999999999999998887642 1112 34455
Q ss_pred HHHHHh--cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008265 296 SLMNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVF 373 (572)
Q Consensus 296 ~ll~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 373 (572)
.+...+ .|++++|...|++..+.. |+. ..+.+.|++++|...++.+... .+.+...+..+...+
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~ 149 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYV-----NPEKAEEARLEGKEY 149 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHc-----CcchHHHHHHHHHHH
Confidence 554443 378999999998888753 342 3566778899999999998862 123455788888999
Q ss_pred HccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHH
Q 008265 374 ADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453 (572)
Q Consensus 374 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 453 (572)
...|++++|+..+++..+.... +...|..+..+|...|++++|...+++..+.. +.+...+..+..++.+.|++++|.
T Consensus 150 ~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 227 (258)
T 3uq3_A 150 FTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASAL 227 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999999998876432 67788899999999999999999999998864 446788999999999999999999
Q ss_pred HHHHHhhhcc
Q 008265 454 RLFRSWTLSK 463 (572)
Q Consensus 454 ~~~~~m~~~~ 463 (572)
+.|++..+..
T Consensus 228 ~~~~~a~~~~ 237 (258)
T 3uq3_A 228 ETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 9999887654
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.51 E-value=3.2e-12 Score=114.09 Aligned_cols=201 Identities=11% Similarity=-0.032 Sum_probs=139.6
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008265 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS 296 (572)
Q Consensus 217 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 296 (572)
||++...+..+...+.+.|++++|...|+...+..+ .+...|..+...+.+.|++++|...|++..+.. |+
T Consensus 1 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~------ 71 (217)
T 2pl2_A 1 MQTAEQNPLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVART--PR------ 71 (217)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT------
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC------
Confidence 355556677777778888888888888887776532 356677777777888888888888887776652 32
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-----------CChHHHHHHHHHHHHHHHhCCCCCCHHH
Q 008265 297 LMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA-----------GNTVLAQEIYGEVKHLEAKGVLKLDVFT 365 (572)
Q Consensus 297 ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 365 (572)
+...+..+..++... |++++|+..|++..+. -+-+...
T Consensus 72 --------------------------~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~P~~~~~ 120 (217)
T 2pl2_A 72 --------------------------YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV-----NPRYAPL 120 (217)
T ss_dssp --------------------------CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH-----CTTCHHH
T ss_pred --------------------------cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh-----CcccHHH
Confidence 223333333333333 8999999999998874 1335678
Q ss_pred HHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 008265 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445 (572)
Q Consensus 366 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 445 (572)
+..+...+...|++++|+..|++..+.. .+...+..+..+|...|++++|...|++..+.. +.+...+..+...+.+
T Consensus 121 ~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~ 197 (217)
T 2pl2_A 121 HLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLL 197 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 8888899999999999999999998877 578888999999999999999999999998864 4467888888899999
Q ss_pred hCCHhHHHHHHHHhh
Q 008265 446 ACQFDRAFRLFRSWT 460 (572)
Q Consensus 446 ~g~~~~A~~~~~~m~ 460 (572)
.|++++|.+.|++..
T Consensus 198 ~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 198 KGKAEEAARAAALEH 212 (217)
T ss_dssp ---------------
T ss_pred ccCHHHHHHHHHHHh
Confidence 999999999988754
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-11 Score=113.43 Aligned_cols=192 Identities=10% Similarity=0.014 Sum_probs=149.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--Cc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 008265 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSS--PN----MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFN 295 (572)
Q Consensus 222 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--~~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 295 (572)
..+..+...+...|++++|...++...+.... ++ ...|..+...|.+.|++++|...|++..+. .|+...+.
T Consensus 39 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~ 116 (258)
T 3uq3_A 39 TYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTADILT 116 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CchhHHHH
Confidence 56677777777888888888888777654211 12 567888888888889999998888888875 34433222
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 008265 296 SLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD 375 (572)
Q Consensus 296 ~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 375 (572)
..+++++|...++.+...... +...+..+...+...|++++|...|+++... .+.+...|..+...|.+
T Consensus 117 -----~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~l~~~~~~ 185 (258)
T 3uq3_A 117 -----KLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKSDWPNAVKAYTEMIKR-----APEDARGYSNRAAALAK 185 (258)
T ss_dssp -----HHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHH
T ss_pred -----HHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CcccHHHHHHHHHHHHH
Confidence 236688888888888775322 4567888888999999999999999999874 24567889999999999
Q ss_pred cccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 376 AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 376 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
.|++++|+..+++..+... .+...|..+..++.+.|++++|.+.+++..+.
T Consensus 186 ~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 186 LMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 9999999999999987642 25678889999999999999999999998764
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1.6e-11 Score=112.41 Aligned_cols=202 Identities=11% Similarity=-0.025 Sum_probs=136.0
Q ss_pred CchhhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCC
Q 008265 67 LSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAP 146 (572)
Q Consensus 67 p~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p 146 (572)
|......|..+...+...|++++|++.|+.+.+.... . ..++..+...+...|++++|+..|+++.+.. |
T Consensus 33 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~--~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~ 102 (252)
T 2ho1_A 33 RDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS--S------ADAHAALAVVFQTEMEPKLADEEYRKALASD--S 102 (252)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT--C------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T
T ss_pred hHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--h------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--c
Confidence 4434688899999999999999999999999987433 1 3445666777889999999999999998863 3
Q ss_pred cchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcC----CCchh
Q 008265 147 LELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADI 222 (572)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~ 222 (572)
+. ...+..+.. .+...|++++|+..++++.+.+..|.....+..+...+...|++++|...++.. |.+..
T Consensus 103 ~~---~~~~~~la~---~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 176 (252)
T 2ho1_A 103 RN---ARVLNNYGG---FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPS 176 (252)
T ss_dssp TC---HHHHHHHHH---HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH
T ss_pred Cc---HHHHHHHHH---HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHH
Confidence 32 113333333 334579999999999998873344555555666666666666666666665542 33445
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008265 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (572)
Q Consensus 223 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 285 (572)
.+..+...+...|++++|...++...+.. +.+...+..+...+.+.|++++|.+.++++.+.
T Consensus 177 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 177 VALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 56666666666666666666666665542 234455566666666666666666666666554
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=7e-12 Score=116.43 Aligned_cols=245 Identities=9% Similarity=-0.036 Sum_probs=141.5
Q ss_pred hhhHHHHHHHHHHHHhCCC--CCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 008265 168 SGEVEMFVGLMEVLEEFRL--PVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYD 245 (572)
Q Consensus 168 ~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 245 (572)
.|++++|+..++++.+... +|... .++..+...+...|++++|...|+
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~------------------------------~~~~~l~~~~~~~~~~~~A~~~~~ 67 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERA------------------------------QLLYERGVLYDSLGLRALARNDFS 67 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHH------------------------------HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhH------------------------------HHHHHHHHHHHHcccHHHHHHHHH
Confidence 6899999999999887532 12222 345555556666666666666666
Q ss_pred HHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCC
Q 008265 246 ASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLEVYKNMQKLGVMAD 323 (572)
Q Consensus 246 ~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~~~~a~~~~~~m~~~~~~~~ 323 (572)
...+... .+...|..+...|...|++++|...|++..+.. +.+...+..+...+ .|++++|...++++.+.. |+
T Consensus 68 ~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~ 143 (275)
T 1xnf_A 68 QALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PN 143 (275)
T ss_dssp HHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT
T ss_pred HHHHcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CC
Confidence 6555422 245556666666666666666666666665542 11233343333332 356666666666665532 33
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCC---chhh
Q 008265 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP---NTIT 400 (572)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~~ 400 (572)
.......+..+...|++++|...+.+.... .+++...+ .++..+...++.++|++.+.+..+..... +...
T Consensus 144 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 217 (275)
T 1xnf_A 144 DPFRSLWLYLAEQKLDEKQAKEVLKQHFEK-----SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSET 217 (275)
T ss_dssp CHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-----SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHH
Confidence 333333444445667777777777666652 12333333 35666667777777777777766542110 1466
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHH
Q 008265 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456 (572)
Q Consensus 401 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 456 (572)
|..+...|.+.|++++|...|++..+.. |+. +.....++...|++++|.+.+
T Consensus 218 ~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 218 NFYLGKYYLSLGDLDSATALFKLAVANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 7777778888888888888888877653 422 223345666777777777665
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=4.6e-10 Score=104.05 Aligned_cols=221 Identities=12% Similarity=0.027 Sum_probs=178.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008265 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGI----CGDYMKSRAIYEDLRSQNVTLNIYVFNSL 297 (572)
Q Consensus 222 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 297 (572)
..+..+...+...|++++|.+.|+...+. -+...+..+...|.. .|++++|...|++..+.+ +...+..+
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 56677788888888899999888888773 345677778888888 899999999999888876 44444444
Q ss_pred HHH--h----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHhCCCCCCHHHHH
Q 008265 298 MNV--N----AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL----AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367 (572)
Q Consensus 298 l~~--~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 367 (572)
-.. . .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+. -+...+.
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-------~~~~a~~ 150 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-------NDGDGCT 150 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-------TCHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-------CcHHHHH
Confidence 333 3 578899999999888764 67788888888988 99999999999998862 2566777
Q ss_pred HHHHHHHc----cccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 008265 368 TIVKVFAD----AKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN----AGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439 (572)
Q Consensus 368 ~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 439 (572)
.+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 224 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNL 224 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHH
Confidence 88888887 899999999999998864 45777888888999 999999999999998875 26677788
Q ss_pred HHHHHH----hCCHhHHHHHHHHhhhccc
Q 008265 440 LQACVE----ACQFDRAFRLFRSWTLSKT 464 (572)
Q Consensus 440 i~~~~~----~g~~~~A~~~~~~m~~~~~ 464 (572)
...|.+ .+++++|.+.|++..+.+.
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 888888 8999999999998877654
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=5.5e-12 Score=117.13 Aligned_cols=256 Identities=9% Similarity=-0.107 Sum_probs=134.2
Q ss_pred hHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHH
Q 008265 120 IVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQ 199 (572)
Q Consensus 120 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~ 199 (572)
...+...|++++|+..|+++.+.....+.. ....+..+.. .+...|++++|+..|++..+.. |.+..
T Consensus 12 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~l~~---~~~~~~~~~~A~~~~~~al~~~--~~~~~------- 78 (275)
T 1xnf_A 12 AVPLQPTLQQEVILARMEQILASRALTDDE-RAQLLYERGV---LYDSLGLRALARNDFSQALAIR--PDMPE------- 78 (275)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTSSCCCHHH-HHHHHHHHHH---HHHHTTCHHHHHHHHHHHHHHC--CCCHH-------
T ss_pred eeccCccchHHHHHHHHHHHHhcccccCch-hHHHHHHHHH---HHHHcccHHHHHHHHHHHHHcC--CCcHH-------
Confidence 334567799999999999998873222211 2223333333 3445899999999999987643 44433
Q ss_pred HHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 008265 200 LCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIY 279 (572)
Q Consensus 200 ~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 279 (572)
++..+...|...|++++|.+.|+...+... .+...+..+...|.+.|++++|...|
T Consensus 79 -----------------------~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~ 134 (275)
T 1xnf_A 79 -----------------------VFNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDL 134 (275)
T ss_dssp -----------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHccCHHHHHHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHH
Confidence 444455555555555555555555554321 13445555555566666666666666
Q ss_pred HHHHhCCCCCCHHHHHHHHH--HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhC
Q 008265 280 EDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357 (572)
Q Consensus 280 ~~m~~~g~~p~~~~~~~ll~--~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 357 (572)
+++.+.. |+.......+. ...|++++|...+.+...... ++...+ .++..+...++.++|...+..........
T Consensus 135 ~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 210 (275)
T 1xnf_A 135 LAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD-KEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSL 210 (275)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC-CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHH
T ss_pred HHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccc
Confidence 6555432 22221111111 122556666666655544321 122222 24445555566666666666654321000
Q ss_pred CCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHH
Q 008265 358 VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421 (572)
Q Consensus 358 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 421 (572)
.+.+...+..+...|.+.|++++|...|++..+. .|+. +.....++...|++++|.+.+
T Consensus 211 -~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 211 -AEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred -cccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 0011355666666666777777777777776665 2322 222244555566666666554
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.41 E-value=1.1e-10 Score=106.70 Aligned_cols=198 Identities=8% Similarity=-0.053 Sum_probs=122.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 008265 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (572)
Q Consensus 222 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 301 (572)
..+..+...+...|++++|.+.|+.+.+.. +.+...+..+...|...|++++|.+.|+++.+.. +.+...+..+...+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 455666677777777777777777776643 2345667777777777777777777777776542 11333343333332
Q ss_pred --cCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcccc
Q 008265 302 --AHDLKFTLEVYKNMQKLGVMA-DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378 (572)
Q Consensus 302 --~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 378 (572)
.|++++|...++++.+.+..| +...+..+...+...|++++|...|+++.+. .+.+...+..+...|...|+
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~la~~~~~~g~ 190 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL-----NRNQPSVALEMADLLYKERE 190 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSCCHHHHHHHHHHHHHTTC
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CcccHHHHHHHHHHHHHcCC
Confidence 256666666666655422223 3445566666677777777777777776653 13345566667777777777
Q ss_pred HHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 379 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
+++|...++++.+... .+...+..+...+...|+.++|.++++++.+.
T Consensus 191 ~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 191 YVPARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 7777777777665432 24455666666677777777777777776654
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.2e-10 Score=101.44 Aligned_cols=199 Identities=8% Similarity=-0.098 Sum_probs=112.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-
Q 008265 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV- 300 (572)
Q Consensus 222 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~- 300 (572)
..+..+...+...|++++|.+.|+.+.+.. +.+...|..+...|...|++++|.+.|++..+.. +.+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 456666777777777777777777766643 2245666777777777777777777777766542 1123333333222
Q ss_pred -hc-CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccc
Q 008265 301 -NA-HDLKFTLEVYKNMQKLGVMAD-MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK 377 (572)
Q Consensus 301 -~~-~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 377 (572)
.. |++++|...++++.+.+..|+ ...+..+...+...|++++|...|+++.+. .+.+...+..+...+.+.|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA-----QPQFPPAFKELARTKMLAG 161 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHHT
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCchHHHHHHHHHHHcC
Confidence 33 455555555555554222222 344555556666666666666666666542 1223555566666666666
Q ss_pred cHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 378 WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 378 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
++++|.+.++++.+.....+...+..+...+...|+.+++..+++.+.+.
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 66666666666555422124444555555556666666666666665543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.7e-10 Score=103.24 Aligned_cols=205 Identities=9% Similarity=-0.064 Sum_probs=151.6
Q ss_pred cccchHHHHHHHHhcCCChHHHHHhhhcC----CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 008265 189 KELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIID 264 (572)
Q Consensus 189 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 264 (572)
.+...+..+...+...|++++|.+.++.. |.+...+..+...+...|++++|.+.|+...+.. +.+...+..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 33444555566666666666666655542 4445677888888888899999999998887753 235678888888
Q ss_pred HHHhc-CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh
Q 008265 265 VCGIC-GDYMKSRAIYEDLRSQNVTLN-IYVFNSLMNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340 (572)
Q Consensus 265 ~~~~~-g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 340 (572)
.+... |++++|...|+++.+.+..|+ ...+..+..++ .|++++|...++++.+.... +...+..+...+.+.|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCH
Confidence 88999 999999999999887433343 34454444443 47899999999888776433 577888899999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHH
Q 008265 341 VLAQEIYGEVKHLEAKGVLK-LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (572)
Q Consensus 341 ~~a~~~~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 402 (572)
++|...++++.+.. + .+...+..+...+...|+.+++...++.+.+. .|+.....
T Consensus 164 ~~A~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~ 219 (225)
T 2vq2_A 164 GDADYYFKKYQSRV-----EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEELQ 219 (225)
T ss_dssp HHHHHHHHHHHHHH-----CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred HHHHHHHHHHHHhC-----CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHH
Confidence 99999999988742 3 46777888888889999999999999998765 45544433
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=3.3e-10 Score=105.04 Aligned_cols=218 Identities=16% Similarity=0.059 Sum_probs=167.2
Q ss_pred chHHHHHHHHhcCCChHHHHHhhhcC--CCchhHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 008265 192 DEEFRIVQLCVNKPDVNLAIRYACIV--PRADILFCNFVREFGK----KRDLVSALRAYDASKKHLSSPNMYICRTIIDV 265 (572)
Q Consensus 192 ~~~~~ll~~~~~~g~~~~a~~~~~~~--~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 265 (572)
..+..+...+...|++++|+..|+.. +.+...+..+...|.. .+++++|...|++..+.+ +...+..+...
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 83 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNL 83 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 44455555566666666666665543 3334567777888888 889999999998888765 67778888888
Q ss_pred HHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--h----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008265 266 CGI----CGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--N----AHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335 (572)
Q Consensus 266 ~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~--~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 335 (572)
|.. .+++++|...|++..+.+ +...+..+-.. . .+++++|+..|++..+.+ +...+..+...|.
T Consensus 84 ~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~ 157 (273)
T 1ouv_A 84 YYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYD 157 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHH
Confidence 888 899999999999888875 44444444333 3 578899999999888865 5667777888888
Q ss_pred H----cCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cccHHHHHHHHHHHHHCCCCCchhhHHHHHHH
Q 008265 336 L----AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD----AKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407 (572)
Q Consensus 336 ~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 407 (572)
. .+++++|...|++..+. .+...+..+...|.. .+++++|++.|++..+.+ +...+..+...
T Consensus 158 ~~~~~~~~~~~A~~~~~~a~~~-------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~ 227 (273)
T 1ouv_A 158 AGRGTPKDLKKALASYDKACDL-------KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAM 227 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHH
Confidence 8 89999999999988762 256778888888888 999999999999988874 25667778888
Q ss_pred HHH----cCCHHHHHHHHHHHHHcC
Q 008265 408 CAN----AGLVEQAMHLFEEMLQAG 428 (572)
Q Consensus 408 ~~~----~g~~~~a~~~~~~m~~~~ 428 (572)
|.. .++.++|.+.|++..+.|
T Consensus 228 ~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 228 QYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHcCCCcccCHHHHHHHHHHHHHcC
Confidence 888 899999999999988775
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.40 E-value=4.1e-11 Score=106.86 Aligned_cols=192 Identities=9% Similarity=-0.097 Sum_probs=107.2
Q ss_pred CcccchHHHHHHHHhcCCChHHHHHhhhcC----CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHH
Q 008265 188 VKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTII 263 (572)
Q Consensus 188 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll 263 (572)
|++...+..+...+.+.|++++|+..|+.. |.+...+..+...+.+.|++++|...|++..+..+ .+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHH
Confidence 344455666677777777777777766653 45557888888899999999999999998887643 2566777888
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHH--hcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 008265 264 DVCGIC-----------GDYMKSRAIYEDLRSQNVTLN-IYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNI 329 (572)
Q Consensus 264 ~~~~~~-----------g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 329 (572)
..+.+. |++++|...|++..+. .|+ ...+..+-.+ ..|++++|+..|++..+.. .+...+..
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 888777 6666666666666654 222 2222222222 2245555555555555444 34555555
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHH
Q 008265 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM 389 (572)
Q Consensus 330 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 389 (572)
+..+|...|++++|...|++..+. -+.+...+..+...+.+.|++++|++.+++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~-----~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQ-----APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 555555555555555555555542 1223445555555555555555555555443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.38 E-value=1.5e-10 Score=111.94 Aligned_cols=240 Identities=10% Similarity=0.008 Sum_probs=161.3
Q ss_pred HHHHHHHHhcCCChHHHHHhhhcC----CCchhHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Q 008265 194 EFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRD-LVSALRAYDASKKHLSSPNMYICRTIIDVCGI 268 (572)
Q Consensus 194 ~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 268 (572)
|..+...+...|++++|+..++.. |.+...|+.+..++...|+ +++|+..|++..+.... +...|+.+-.++.+
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~~~~ 178 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLVEW 178 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHH
Confidence 333444444445555554444432 3444677777777888885 88888888888775432 56778888888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCChHHH--
Q 008265 269 CGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL-AGNTVLA-- 343 (572)
Q Consensus 269 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~g~~~~a-- 343 (572)
.|++++|+..|+++.+.. +-+...|..+-.++ .|++++|+..++++.+.... +...|+.+..++.+ .|..++|
T Consensus 179 ~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA~~ 256 (382)
T 2h6f_A 179 LRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRAVL 256 (382)
T ss_dssp HTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHHH
T ss_pred ccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchHHHH
Confidence 888888888888887653 12344554444433 37888888888888876544 67788888888888 5555777
Q ss_pred ---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccc--cHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcC------
Q 008265 344 ---QEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK--WWQMALKVKEDMLSAGVTPNTITWSSLINACANAG------ 412 (572)
Q Consensus 344 ---~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g------ 412 (572)
+..|++...+ -+-+...|+.+...+.+.| ++++|++.+.++ +. ...+...+..+..+|.+.|
T Consensus 257 ~~el~~~~~Al~l-----~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 257 EREVQYTLEMIKL-----VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHH-----STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccc
Confidence 4778777764 1335668888888888877 688888888887 33 2335577788888888764
Q ss_pred ---CHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHH
Q 008265 413 ---LVEQAMHLFEEM-LQAGCEPNSQCCNILLQACV 444 (572)
Q Consensus 413 ---~~~~a~~~~~~m-~~~~~~p~~~~~~~li~~~~ 444 (572)
..++|.++++++ .+.. +.....|..+...+.
T Consensus 330 ~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKD-TIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHHH
Confidence 258899999888 5542 223455655555443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=7.7e-11 Score=107.05 Aligned_cols=199 Identities=9% Similarity=0.017 Sum_probs=121.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 008265 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (572)
Q Consensus 222 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 301 (572)
..+..+...+...|++++|...|+...+.. +.+...+..+...+.+.|++++|.+.|++..+.
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---------------- 86 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALEL---------------- 86 (243)
T ss_dssp ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----------------
Confidence 345555566666666666666666665532 224555555666666666666666666555443
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHH
Q 008265 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381 (572)
Q Consensus 302 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 381 (572)
.. .+...+..+...+...|++++|...++++.+. .+.+...+..+...+.+.|++++
T Consensus 87 -----------------~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~~ 143 (243)
T 2q7f_A 87 -----------------DS-SAATAYYGAGNVYVVKEMYKEAKDMFEKALRA-----GMENGDLFYMLGTVLVKLEQPKL 143 (243)
T ss_dssp -----------------CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----TCCSHHHHHHHHHHHHHTSCHHH
T ss_pred -----------------CC-cchHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhccHHH
Confidence 21 24566666777777778888888877777663 13456677777777777888888
Q ss_pred HHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 382 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
|+..++++.+... .+...+..+...+.+.|++++|...++++.+.. +.+..++..+..++.+.|++++|.+.+++..+
T Consensus 144 A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 144 ALPYLQRAVELNE-NDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 8888877766532 255667777777888888888888888777653 34566777777888888888888888887765
Q ss_pred c
Q 008265 462 S 462 (572)
Q Consensus 462 ~ 462 (572)
.
T Consensus 222 ~ 222 (243)
T 2q7f_A 222 I 222 (243)
T ss_dssp H
T ss_pred c
Confidence 4
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=7.9e-11 Score=106.98 Aligned_cols=196 Identities=13% Similarity=0.034 Sum_probs=119.3
Q ss_pred cchHHHHHHHHhcCCChHHHHHhhhcC----CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 008265 191 LDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVC 266 (572)
Q Consensus 191 ~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 266 (572)
...+..+...+...|++++|...++.. |.+...+..+...+...|++++|...|+...+... .+...+..+...+
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~ 101 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGNVY 101 (243)
T ss_dssp -------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHHHH
Confidence 355777888999999999998888764 55668888999999999999999999999987643 3678888999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 008265 267 GICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEI 346 (572)
Q Consensus 267 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 346 (572)
...|++++|.+.|+++.+.. |+ +...+..+...+.+.|++++|...
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~--~~--------------------------------~~~~~~~~a~~~~~~~~~~~A~~~ 147 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAG--ME--------------------------------NGDLFYMLGTVLVKLEQPKLALPY 147 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHT--CC--------------------------------SHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC--CC--------------------------------CHHHHHHHHHHHHHhccHHHHHHH
Confidence 99999999999999887652 11 223344455555556666666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008265 347 YGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426 (572)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 426 (572)
++++.+. .+.+...+..+...+.+.|++++|++.++++.+... .+..++..+..+|...|++++|.+.++++.+
T Consensus 148 ~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 148 LQRAVEL-----NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHH-----CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHh-----CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 6655542 123445555555566666666666666665554421 1344555566666666666666666666655
Q ss_pred c
Q 008265 427 A 427 (572)
Q Consensus 427 ~ 427 (572)
.
T Consensus 222 ~ 222 (243)
T 2q7f_A 222 I 222 (243)
T ss_dssp H
T ss_pred c
Confidence 4
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.3e-10 Score=114.58 Aligned_cols=319 Identities=14% Similarity=0.011 Sum_probs=206.8
Q ss_pred hhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCC-Ccc
Q 008265 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVA-PLE 148 (572)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~ 148 (572)
....+......+...|++++|+..|+...+....... ....++..+...+...|++++|+..+++.....-. .+.
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 83 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLK----TLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ 83 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHH----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHH----HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccc
Confidence 3566777888899999999999999999987543111 12345667777888999999999999887654110 111
Q ss_pred hhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHH
Q 008265 149 LFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFV 228 (572)
Q Consensus 149 ~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li 228 (572)
.. ...++......+...|++++|+..+++..+......+ .. ....++..+.
T Consensus 84 ~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----------------~~----------~~~~~~~~l~ 134 (406)
T 3sf4_A 84 LG---EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND----------------KV----------GEARALYNLG 134 (406)
T ss_dssp HH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC----------------HH----------HHHHHHHHHH
T ss_pred HH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc----------------cc----------chHHHHHHHH
Confidence 11 1222222222334578888888888776542110000 00 0014667777
Q ss_pred HHHHhcCC--------------------HHHHHHHHHHHHhc----CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008265 229 REFGKKRD--------------------LVSALRAYDASKKH----LSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLR 283 (572)
Q Consensus 229 ~~~~~~g~--------------------~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 283 (572)
..|...|+ +++|.+.++...+. +..+ ....+..+...|...|++++|.+.|++..
T Consensus 135 ~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 214 (406)
T 3sf4_A 135 NVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 214 (406)
T ss_dssp HHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHH
T ss_pred HHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 78888888 88888887765432 1111 23467777788888888888888887776
Q ss_pred hCCCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCC-
Q 008265 284 SQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGV-MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL- 361 (572)
Q Consensus 284 ~~g~~p~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~- 361 (572)
+. .. +.+. .....++..+...|...|++++|...+++...........+
T Consensus 215 ~~--------------------------~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 265 (406)
T 3sf4_A 215 LI--------------------------AK---EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 265 (406)
T ss_dssp HH--------------------------HH---HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HH--------------------------HH---hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchH
Confidence 42 00 0000 00134677788888999999999999998876542221111
Q ss_pred CHHHHHHHHHHHHccccHHHHHHHHHHHHHC----CCCC-chhhHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-
Q 008265 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSA----GVTP-NTITWSSLINACANAGLVEQAMHLFEEMLQA----GCEP- 431 (572)
Q Consensus 362 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p- 431 (572)
...++..+...|...|++++|.+.+++..+. +..+ ...++..+...|...|++++|.+.+++..+. +..+
T Consensus 266 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 345 (406)
T 3sf4_A 266 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSG 345 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcc
Confidence 1457788888999999999999999887653 1111 1456788888999999999999999987642 2111
Q ss_pred CHHHHHHHHHHHHHhCCHh
Q 008265 432 NSQCCNILLQACVEACQFD 450 (572)
Q Consensus 432 ~~~~~~~li~~~~~~g~~~ 450 (572)
...++..+...+...|+..
T Consensus 346 ~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 346 ELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTS
T ss_pred hhHHHHHHHHHHHHhhHhH
Confidence 2455667777777777653
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.3e-10 Score=107.65 Aligned_cols=232 Identities=10% Similarity=-0.003 Sum_probs=153.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHH-
Q 008265 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN--IYVFNSLMNV- 300 (572)
Q Consensus 224 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~- 300 (572)
+......+...|++++|...|+...+... .+...+..+...|...|++++|...|++..+.+..++ ...|..+-..
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 34455666677777777777777766432 2334566666677777777777777777766432222 1223333333
Q ss_pred -hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccH
Q 008265 301 -NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW 379 (572)
Q Consensus 301 -~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 379 (572)
..|++++|+..|++..+.... +...+..+...|...|++++|...|++..+. .+.+...|..+...+...+++
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-----TTTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-----SCCCHHHHHHHHHHHHHTTCH
T ss_pred HHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-----CCCcHHHHHHHHHHHHHHHHH
Confidence 336777777777777665433 5567888888888888888888888887652 233555666666233344588
Q ss_pred HHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCC---HHHHHHHHHHHHHcC-CCCC------HHHHHHHHHHHHHhCCH
Q 008265 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGL---VEQAMHLFEEMLQAG-CEPN------SQCCNILLQACVEACQF 449 (572)
Q Consensus 380 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~-~~p~------~~~~~~li~~~~~~g~~ 449 (572)
++|++.|+++.+.... +...+..+..++...|+ .++|...+++..+.. -.|+ ..+|..+...|.+.|++
T Consensus 159 ~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 159 VKADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 8888888888776322 35667777777777777 777888888776531 1232 25677788888888999
Q ss_pred hHHHHHHHHhhhcc
Q 008265 450 DRAFRLFRSWTLSK 463 (572)
Q Consensus 450 ~~A~~~~~~m~~~~ 463 (572)
++|.+.|++..+..
T Consensus 238 ~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 238 VKADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcC
Confidence 99999888887654
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.1e-10 Score=115.39 Aligned_cols=288 Identities=12% Similarity=0.004 Sum_probs=190.3
Q ss_pred HhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcch-hhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchH
Q 008265 116 VASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL-FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEE 194 (572)
Q Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 194 (572)
+......+...|++++|+..|++..+. .|+.. .....+..+.. .+...|++++|+..+++..+.....
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~lg~---~~~~~g~~~~A~~~~~~al~~~~~~------ 119 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQA--GTEDLRTLSAIYSQLGN---AYFYLGDYNKAMQYHKHDLTLAKSM------ 119 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHH---HHHHHTCHHHHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHh--cccChhHHHHHHHHHHH---HHHHCCCHHHHHHHHHHHHHHHHHc------
Confidence 334555678899999999999999887 33321 11112222222 3345799999999988765421000
Q ss_pred HHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CC-CCcHHHHHHHHHHHHhc
Q 008265 195 FRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKH----LS-SPNMYICRTIIDVCGIC 269 (572)
Q Consensus 195 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~-~~~~~~~~~ll~~~~~~ 269 (572)
++. +.....+..+...|...|++++|...|++..+. +- ......+..+...|...
T Consensus 120 ----------~~~----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 179 (411)
T 4a1s_A 120 ----------NDR----------LGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAK 179 (411)
T ss_dssp ----------TCH----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ----------cCc----------hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHc
Confidence 000 001256677788888888888888888776543 11 11244677788888888
Q ss_pred CC-----------------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008265 270 GD-----------------YMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLK 332 (572)
Q Consensus 270 g~-----------------~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 332 (572)
|+ +++|.+.+++.. .+...... ......++..+..
T Consensus 180 g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al--------------------------~~~~~~~~--~~~~~~~~~~la~ 231 (411)
T 4a1s_A 180 GKHLGQRNPGKFGDDVKEALTRAVEFYQENL--------------------------KLMRDLGD--RGAQGRACGNLGN 231 (411)
T ss_dssp HHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH--------------------------HHHHHHTC--HHHHHHHHHHHHH
T ss_pred CcccccccchhhhhhhhHHHHHHHHHHHHHH--------------------------HHHHHcCC--HHHHHHHHHHHHH
Confidence 88 555555555433 22222210 0112346777888
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCC-----CchhhHHHHHH
Q 008265 333 ACCLAGNTVLAQEIYGEVKHLEAKGV-LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT-----PNTITWSSLIN 406 (572)
Q Consensus 333 ~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-----p~~~~~~~li~ 406 (572)
.|...|++++|...+++..+...... .......+..+...|...|++++|.+.+++..+.... ....++..+..
T Consensus 232 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 311 (411)
T 4a1s_A 232 TYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGN 311 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 89999999999999999877542210 0111237788889999999999999999887654110 11467888899
Q ss_pred HHHHcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhc
Q 008265 407 ACANAGLVEQAMHLFEEMLQA----GCE-PNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (572)
Q Consensus 407 ~~~~~g~~~~a~~~~~~m~~~----~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 462 (572)
.|...|++++|...+++..+. +.. ....++..+...|.+.|++++|.+.|++..+.
T Consensus 312 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 312 TYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 999999999999999988653 111 12357788889999999999999999987653
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.5e-10 Score=104.73 Aligned_cols=185 Identities=14% Similarity=0.029 Sum_probs=98.2
Q ss_pred HHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcC---CCch----hHHHHHHHHHHhcC
Q 008265 163 QRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV---PRAD----ILFCNFVREFGKKR 235 (572)
Q Consensus 163 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~---~~~~----~~~~~li~~~~~~g 235 (572)
..+...|++++|+..|++..+. .|.+...+..+...+...|++++|+..++.. +.+. ..|..+...+...|
T Consensus 11 ~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~ 88 (272)
T 3u4t_A 11 DFLFKNNNYAEAIEVFNKLEAK--KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKG 88 (272)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHT--TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcc
Confidence 3445678888888888887764 3455556666666666666666666665543 1111 23556666666666
Q ss_pred CHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHhc-CChHHHHHHHH
Q 008265 236 DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM-NVNA-HDLKFTLEVYK 313 (572)
Q Consensus 236 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll-~~~~-~~~~~a~~~~~ 313 (572)
++++|...|+...+... .+...|..+...|...|++++|...|++..+.. +.+...|..+- ..+. +++++|...|+
T Consensus 89 ~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 166 (272)
T 3u4t_A 89 QDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFV 166 (272)
T ss_dssp CHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666655422 234556666666666666666666666665541 11222332222 2221 34455555555
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHH
Q 008265 314 NMQKLGVMADMASYNILLKACCLAGN---TVLAQEIYGEVKH 352 (572)
Q Consensus 314 ~m~~~~~~~~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~ 352 (572)
++.+.... +...+..+..++...|+ +++|...++++.+
T Consensus 167 ~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 207 (272)
T 3u4t_A 167 KVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207 (272)
T ss_dssp HHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHH
T ss_pred HHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH
Confidence 44443211 23334444444444444 4444444444444
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.33 E-value=2.9e-10 Score=110.03 Aligned_cols=231 Identities=8% Similarity=0.025 Sum_probs=187.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008265 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGD-YMKSRAIYEDLRSQNVTLNIYVFNSLMNV 300 (572)
Q Consensus 222 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 300 (572)
..|..+...+.+.|++++|+..|+...+... -+...|+.+..++...|+ +++|+..|++..+... -+...|+.+-.+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHH
Confidence 6788899999999999999999999988643 357889999999999997 9999999999998632 244555555444
Q ss_pred --hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc-cc
Q 008265 301 --NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD-AK 377 (572)
Q Consensus 301 --~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g 377 (572)
..|++++|+..|+++.+.... +...|..+..++.+.|++++|+..|+++.+.. +-+...|+.+..++.+ .|
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-----P~~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-----VRNNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTC
T ss_pred HHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHhcC
Confidence 348999999999999987654 78899999999999999999999999999842 4467799999999998 66
Q ss_pred cHHHH-----HHHHHHHHHCCCCCchhhHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC---
Q 008265 378 WWQMA-----LKVKEDMLSAGVTPNTITWSSLINACANAG--LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC--- 447 (572)
Q Consensus 378 ~~~~a-----~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--- 447 (572)
..++| ++.+++..+.... +...|+.+...+...| +.++|.+.+.++ +. -..+...+..+...|.+.|
T Consensus 250 ~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~ 326 (382)
T 2h6f_A 250 YNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQ 326 (382)
T ss_dssp SCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhccc
Confidence 65777 5888888776332 5678888888888888 689999999888 33 2456788889999998874
Q ss_pred ------CHhHHHHHHHHh-hhcc
Q 008265 448 ------QFDRAFRLFRSW-TLSK 463 (572)
Q Consensus 448 ------~~~~A~~~~~~m-~~~~ 463 (572)
..++|.++|+++ .+.+
T Consensus 327 ~~~~~~~~~~A~~~~~~l~~~~D 349 (382)
T 2h6f_A 327 CDNKEDILNKALELCEILAKEKD 349 (382)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTC
T ss_pred ccchHHHHHHHHHHHHHHHHHhC
Confidence 358999999998 5544
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.32 E-value=2e-10 Score=109.75 Aligned_cols=295 Identities=14% Similarity=0.015 Sum_probs=174.1
Q ss_pred hhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCC-Ccch
Q 008265 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVA-PLEL 149 (572)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~ 149 (572)
...+......+...|++++|+..|++..+...... .....++..+...+...|++++|+..+++..+.... ++..
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 80 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDL----KTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 80 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccH----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccH
Confidence 34555667778889999999999999988744311 112445667777888999999999999887654100 1111
Q ss_pred hhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHH
Q 008265 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVR 229 (572)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~ 229 (572)
. ...++......+...|++++|+..+++..+......+ .. ....++..+..
T Consensus 81 ~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----------------~~----------~~~~~~~~l~~ 131 (338)
T 3ro2_A 81 G---EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND----------------KV----------GEARALYNLGN 131 (338)
T ss_dssp H---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----------------HH----------HHHHHHHHHHH
T ss_pred H---HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC----------------ch----------HHHHHHHHHHH
Confidence 1 1222222222334578888888887765442110000 00 00136667777
Q ss_pred HHHhcCC--------------------HHHHHHHHHHHHhc----CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008265 230 EFGKKRD--------------------LVSALRAYDASKKH----LSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (572)
Q Consensus 230 ~~~~~g~--------------------~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 284 (572)
.+...|+ +++|.+.++...+. +..+ ....+..+...+...|++++|.+.+++..+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 211 (338)
T 3ro2_A 132 VYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 211 (338)
T ss_dssp HHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7777777 77887777665332 1111 234667777778888888888888877654
Q ss_pred CCCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCC-CH
Q 008265 285 QNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DV 363 (572)
Q Consensus 285 ~g~~p~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~ 363 (572)
. .... ........++..+...+...|++++|...+++...........+ ..
T Consensus 212 ~--------------------------~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (338)
T 3ro2_A 212 I--------------------------AKEF--GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 263 (338)
T ss_dssp H--------------------------HHHH--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred H--------------------------HHhc--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 2 0000 00001123566777788888888888888888776432211011 13
Q ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHCC----CCC-chhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008265 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAG----VTP-NTITWSSLINACANAGLVEQAMHLFEEMLQ 426 (572)
Q Consensus 364 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 426 (572)
.++..+...|...|++++|...+++..+.. ..+ ...++..+...|.+.|++++|...+++..+
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 456666677777777777777777664321 000 123455566666666666666666666654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.31 E-value=4.8e-10 Score=107.06 Aligned_cols=288 Identities=11% Similarity=-0.014 Sum_probs=186.4
Q ss_pred hhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHH
Q 008265 117 ASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFR 196 (572)
Q Consensus 117 ~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 196 (572)
......+...|++++|+..|+++.+. .|+... ....++......+...|++++|+..+++..+.....
T Consensus 9 ~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-------- 76 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGVSFFEAAVQV--GTEDLK--TLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI-------- 76 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhh--CcccHH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc--------
Confidence 33445677888999999999888876 333210 011222222223344788888888877654321000
Q ss_pred HHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCc----HHHHHHHHHHHHhcCC
Q 008265 197 IVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLS-SPN----MYICRTIIDVCGICGD 271 (572)
Q Consensus 197 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~----~~~~~~ll~~~~~~g~ 271 (572)
++. +....++..+...+...|++++|...+++..+... .++ ..++..+...|...|+
T Consensus 77 --------~~~----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 138 (338)
T 3ro2_A 77 --------GDQ----------LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 138 (338)
T ss_dssp --------TCH----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred --------ccc----------HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence 000 00124667778888888888888888887654311 112 3367777777888887
Q ss_pred --------------------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008265 272 --------------------YMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILL 331 (572)
Q Consensus 272 --------------------~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 331 (572)
+++|.+.+++..+ +..... ........+..+.
T Consensus 139 ~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~--------------------------~~~~~~--~~~~~~~~~~~l~ 190 (338)
T 3ro2_A 139 SFGCPGPQDTGEFPEDVRNALQAAVDLYEENLS--------------------------LVTALG--DRAAQGRAFGNLG 190 (338)
T ss_dssp TSSSSSCC----CCHHHHHHHHHHHHHHHHHHH--------------------------HHHHHT--CHHHHHHHHHHHH
T ss_pred ccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH--------------------------HHHhcC--CHHHHHHHHHHHH
Confidence 5555555554432 111110 0011234677788
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHC----CCCC-chhhHHHHH
Q 008265 332 KACCLAGNTVLAQEIYGEVKHLEAKGV-LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA----GVTP-NTITWSSLI 405 (572)
Q Consensus 332 ~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li 405 (572)
..+...|++++|...+++..+...... ......++..+...+...|++++|.+.+++..+. +..+ ...++..+.
T Consensus 191 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 270 (338)
T 3ro2_A 191 NTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLG 270 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Confidence 889999999999999999876532211 1112337888889999999999999999987643 1111 145678888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHhCCHhHHHHHHHHhhhc
Q 008265 406 NACANAGLVEQAMHLFEEMLQA----GCEP-NSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (572)
Q Consensus 406 ~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 462 (572)
..|...|++++|...+++..+. +-.+ ...++..+...+.+.|++++|.+.+++..+.
T Consensus 271 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 271 NTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999999999999999988653 1111 1447788899999999999999999987653
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.30 E-value=3.6e-10 Score=111.68 Aligned_cols=296 Identities=14% Similarity=0.018 Sum_probs=197.4
Q ss_pred hhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCC-CCcch
Q 008265 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGV-APLEL 149 (572)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~ 149 (572)
...+..+...+...|++++|+..|++..+....-. .....++..+...+...|++++|+..+++..+..- ..+..
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 123 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDL----RTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRL 123 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH----HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccCh----hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCch
Confidence 55666778888999999999999999998754311 11134566777888999999999999988766410 01111
Q ss_pred hhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHH
Q 008265 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVR 229 (572)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~ 229 (572)
. ....+......+...|++++|+..+++..+..... ++. +....++..+..
T Consensus 124 ~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----------------~~~----------~~~~~~~~~l~~ 174 (411)
T 4a1s_A 124 G---EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL----------------GDR----------LSEGRALYNLGN 174 (411)
T ss_dssp H---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----------------TCH----------HHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh----------------hch----------HHHHHHHHHHHH
Confidence 1 22222222233445788888888888765421000 000 001246677778
Q ss_pred HHHhcCC-----------------HHHHHHHHHHHHhc----CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 008265 230 EFGKKRD-----------------LVSALRAYDASKKH----LSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287 (572)
Q Consensus 230 ~~~~~g~-----------------~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 287 (572)
.|...|+ +++|.+.+++..+. +..+ ....+..+...|...|++++|.+.|++..+.
T Consensus 175 ~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-- 252 (411)
T 4a1s_A 175 VYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRI-- 252 (411)
T ss_dssp HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--
Confidence 8888888 88888887765432 1111 2347777888888999999999888877643
Q ss_pred CCCHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCC-CCCCHHHH
Q 008265 288 TLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV-LKLDVFTY 366 (572)
Q Consensus 288 ~p~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~~ 366 (572)
..... ........+..+...|...|++++|...+++......... ......++
T Consensus 253 ------------------------~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 306 (411)
T 4a1s_A 253 ------------------------AREFG--DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSC 306 (411)
T ss_dssp ------------------------HHHHT--CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ------------------------HHhcC--CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 00000 0000134677788889999999999999998877543211 01124578
Q ss_pred HHHHHHHHccccHHHHHHHHHHHHHCC----CC-CchhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 367 STIVKVFADAKWWQMALKVKEDMLSAG----VT-PNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 367 ~~li~~~~~~g~~~~a~~~~~~m~~~g----~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
..+...|...|++++|.+.+++..+.. .. ....++..+...|.+.|++++|.+.+++..+.
T Consensus 307 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 307 YSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 888899999999999999999876541 11 11346788899999999999999999998764
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.2e-10 Score=112.89 Aligned_cols=271 Identities=15% Similarity=0.070 Sum_probs=172.4
Q ss_pred HHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 008265 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRA 243 (572)
Q Consensus 164 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 243 (572)
.+...|++++|+..|++..+.. |.+.... ..++..+...+...|++++|...
T Consensus 18 ~~~~~g~~~~A~~~~~~al~~~--~~~~~~~--------------------------~~~~~~l~~~~~~~g~~~~A~~~ 69 (406)
T 3sf4_A 18 RLCKSGDCRAGVSFFEAAVQVG--TEDLKTL--------------------------SAIYSQLGNAYFYLHDYAKALEY 69 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CSCHHHH--------------------------HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhcC--cccHHHH--------------------------HHHHHHHHHHHHHhcCHHHHHHH
Confidence 4455677777777777766642 2221100 13455556666666666666666
Q ss_pred HHHHHhc----CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHh--cCC-------
Q 008265 244 YDASKKH----LSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV-TLN----IYVFNSLMNVN--AHD------- 304 (572)
Q Consensus 244 ~~~m~~~----~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~--~~~------- 304 (572)
++...+. +..| ....+..+...|...|++++|...+++..+... .++ ..++..+-..+ .|+
T Consensus 70 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~ 149 (406)
T 3sf4_A 70 HHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGP 149 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC----
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCccccccc
Confidence 6654321 1111 134556666666777777777777666543200 011 11222222222 255
Q ss_pred -------------hHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCC-CHHH
Q 008265 305 -------------LKFTLEVYKNMQKL----GVMA-DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DVFT 365 (572)
Q Consensus 305 -------------~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~ 365 (572)
+++|...+.+..+. +..+ ...++..+...|...|++++|...+++..+........+ ...+
T Consensus 150 ~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 229 (406)
T 3sf4_A 150 QDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRA 229 (406)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 66676666655431 1111 234677888899999999999999999887543321111 1337
Q ss_pred HHHHHHHHHccccHHHHHHHHHHHHHC----CCCCc-hhhHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHH
Q 008265 366 YSTIVKVFADAKWWQMALKVKEDMLSA----GVTPN-TITWSSLINACANAGLVEQAMHLFEEMLQA----GCEP-NSQC 435 (572)
Q Consensus 366 ~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~ 435 (572)
+..+...|...|++++|...+++..+. +..+. ..++..+...|...|++++|...+++..+. +-.+ ...+
T Consensus 230 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 309 (406)
T 3sf4_A 230 YSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRA 309 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 888899999999999999999987643 11111 457888999999999999999999998753 1111 1557
Q ss_pred HHHHHHHHHHhCCHhHHHHHHHHhhhc
Q 008265 436 CNILLQACVEACQFDRAFRLFRSWTLS 462 (572)
Q Consensus 436 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 462 (572)
+..+...|.+.|++++|.+.+++..+.
T Consensus 310 ~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 310 CWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888889999999999999999987653
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=4.8e-10 Score=105.91 Aligned_cols=239 Identities=10% Similarity=-0.006 Sum_probs=158.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCC
Q 008265 222 ILFCNFVREFGKKRDLVSALRAYDASKKH-------LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ------NVT 288 (572)
Q Consensus 222 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~------g~~ 288 (572)
.++..+...+...|++++|..+|+.+.+. ........+..+...|...|++++|...|++..+. +-.
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 67888899999999999999999988763 22334567888999999999999999999988754 212
Q ss_pred C-CHHHHHHHHHHh--cCChHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhC-
Q 008265 289 L-NIYVFNSLMNVN--AHDLKFTLEVYKNMQKL------GVMA-DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG- 357 (572)
Q Consensus 289 p-~~~~~~~ll~~~--~~~~~~a~~~~~~m~~~------~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~- 357 (572)
| ....+..+...+ .|++++|...+++..+. +..| ....+..+...+...|++++|...|+++.......
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 2 234444444443 37899999999888764 2222 34567778888889999999999999988753221
Q ss_pred -CCCC-CHHHHHHHHHHHHccccHHHHHHHHHHHHHC-------CCCCchhhHH-------HHHHHHHHcCCHHHHHHHH
Q 008265 358 -VLKL-DVFTYSTIVKVFADAKWWQMALKVKEDMLSA-------GVTPNTITWS-------SLINACANAGLVEQAMHLF 421 (572)
Q Consensus 358 -~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------g~~p~~~~~~-------~li~~~~~~g~~~~a~~~~ 421 (572)
...| ...++..+...|...|++++|.+.++++.+. ...+...... .+...+...+.+.++...+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 267 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY 267 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence 0122 2347788888899999999999999988753 1122222222 2222233334444555555
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 422 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
....... ..+..++..+..+|.+.|++++|.+.|++..+
T Consensus 268 ~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 268 KACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5554332 33457788999999999999999999998764
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.25 E-value=4.3e-09 Score=104.98 Aligned_cols=346 Identities=9% Similarity=-0.081 Sum_probs=215.3
Q ss_pred HHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCCh---hHHHHHHHHhhhcCCCCcchhhh
Q 008265 76 DMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRI---DCVVGVLKKLNELGVAPLELFDG 152 (572)
Q Consensus 76 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~---~~A~~~~~~m~~~~~~p~~~~~~ 152 (572)
.+...+.+.|++++|.++|+...+.|.... +..+...+...|+. ++|+..|++..+. .|+..
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g~~~A----------~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~--~~~A~--- 72 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELGYSEA----------QVGLADIQVGTRDPAQIKQAEATYRAAADT--SPRAQ--- 72 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCTG----------GGTCC------------------------------CH---
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCHHH----------HHHHHHHHHccCCCCCHHHHHHHHHHHHhC--CHHHH---
Confidence 356677889999999999999987763322 23344445667777 8999999988765 44322
Q ss_pred hhhHHHHHHHHHH--hhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHH---HHhhhcCC--CchhHHH
Q 008265 153 SGFKLLKNECQRL--LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLA---IRYACIVP--RADILFC 225 (572)
Q Consensus 153 ~~~~~l~~~~~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a---~~~~~~~~--~~~~~~~ 225 (572)
..+-..+... ...++.++|+..|++..+.|. ...+..|...|...+..+.+ .+.+.... .......
T Consensus 73 ---~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~----~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~ 145 (452)
T 3e4b_A 73 ---ARLGRLLAAKPGATEAEHHEAESLLKKAFANGE----GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGL 145 (452)
T ss_dssp ---HHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTC----SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHH
T ss_pred ---HHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCC----HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHH
Confidence 1111111110 012589999999999887552 34677888888877665443 33333221 2235677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc
Q 008265 226 NFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG---DYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA 302 (572)
Q Consensus 226 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 302 (572)
.|...|...+.++.+......+.+.-...+...+..+-..|.+.| +.++|++.|++..+.|. ++...+..+-..+.
T Consensus 146 ~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~ 224 (452)
T 3e4b_A 146 AQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLG 224 (452)
T ss_dssp HHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHh
Confidence 788888888855544444333322211223337788888889999 99999999999999874 34443233322222
Q ss_pred ------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008265 303 ------HDLKFTLEVYKNMQKLGVMADMASYNILLKA-C--CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVF 373 (572)
Q Consensus 303 ------~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 373 (572)
++.++|...|++.. .| +...+..+... + ...+++++|...|++..+ . -+...+..|...|
T Consensus 225 ~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~---~----g~~~A~~~Lg~~y 293 (452)
T 3e4b_A 225 DATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA---A----DQPRAELLLGKLY 293 (452)
T ss_dssp CGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH---T----TCHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---C----CCHHHHHHHHHHH
Confidence 58999999999987 33 45566666666 3 468999999999999886 2 2677777787777
Q ss_pred Hccc-----cHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008265 374 ADAK-----WWQMALKVKEDMLSAGVTPNTITWSSLINACAN----AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444 (572)
Q Consensus 374 ~~~g-----~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 444 (572)
. .| ++++|++.|++.. . -+...+..|-..|.. ..+.++|...|++..+.|. ++ ....|...|.
T Consensus 294 ~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~ 365 (452)
T 3e4b_A 294 Y-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ-NS--ADFAIAQLFS 365 (452)
T ss_dssp H-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC-TT--HHHHHHHHHH
T ss_pred H-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh-HH--HHHHHHHHHH
Confidence 7 55 9999999999887 3 355667777777766 3489999999999988773 33 3445555554
Q ss_pred H----hCCHhHHHHHHHHhhhcc
Q 008265 445 E----ACQFDRAFRLFRSWTLSK 463 (572)
Q Consensus 445 ~----~g~~~~A~~~~~~m~~~~ 463 (572)
. ..+.++|...|+...+.|
T Consensus 366 ~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 366 QGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp SCTTBCCCHHHHHHHHHHHHTTC
T ss_pred hCCCCCCCHHHHHHHHHHHHHCC
Confidence 3 458899999998876654
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.24 E-value=2.8e-09 Score=92.14 Aligned_cols=166 Identities=14% Similarity=0.070 Sum_probs=103.6
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008265 219 RADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298 (572)
Q Consensus 219 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 298 (572)
++..+|..+...|.+.|++++|.+.|++..+..+ -+...|..+..+|.+.|++++|...+......... +...+..+-
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHH
Confidence 3456788888888889999999999988877643 25678888888888888888888888887765211 122222221
Q ss_pred H--HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 008265 299 N--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA 376 (572)
Q Consensus 299 ~--~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 376 (572)
. ...++++.+...+.+..+.... +...+..+...|.+.|++++|++.|++..+. -+.+..+|..+..+|.+.
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~~lg~~~~~~ 154 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISI-----KPGFIRAYQSIGLAYEGK 154 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHh-----cchhhhHHHHHHHHHHHC
Confidence 1 2235566666666655554322 4555555566666666666666666665553 123444556666666666
Q ss_pred ccHHHHHHHHHHHHHC
Q 008265 377 KWWQMALKVKEDMLSA 392 (572)
Q Consensus 377 g~~~~a~~~~~~m~~~ 392 (572)
|++++|++.|++..+.
T Consensus 155 g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 155 GLRDEAVKYFKKALEK 170 (184)
T ss_dssp TCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhC
Confidence 6666666666665543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.23 E-value=4e-09 Score=103.04 Aligned_cols=238 Identities=8% Similarity=-0.062 Sum_probs=122.6
Q ss_pred hhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 008265 166 LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYD 245 (572)
Q Consensus 166 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 245 (572)
...|++++|+..+++..+.-...++.. ....++..+...|...|++++|...+.
T Consensus 114 ~~~g~~~~A~~~~~~al~~~~~~~~~~--------------------------~~a~~~~~lg~~~~~~~~~~~A~~~~~ 167 (383)
T 3ulq_A 114 LDQREYLSAIKFFKKAESKLIFVKDRI--------------------------EKAEFFFKMSESYYYMKQTYFSMDYAR 167 (383)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHH--------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCCCHH--------------------------HHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 456888888888887665311111100 011466677777777788877777777
Q ss_pred HHHhcC--C----CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 008265 246 ASKKHL--S----SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV-TLNIYVFNSLMNVNAHDLKFTLEVYKNMQKL 318 (572)
Q Consensus 246 ~m~~~~--~----~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~~~a~~~~~~m~~~ 318 (572)
+..+.. . .....+++.+...|...|++++|...|++..+..- .++..
T Consensus 168 ~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------- 221 (383)
T 3ulq_A 168 QAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQ-------------------------- 221 (383)
T ss_dssp HHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH--------------------------
T ss_pred HHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChH--------------------------
Confidence 654421 1 01234677777888888888888888877654200 00100
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHC----C
Q 008265 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL-KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA----G 393 (572)
Q Consensus 319 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g 393 (572)
....++..+...|...|++++|...|++..+....... +....++..+...|.+.|++++|.+.+++..+. +
T Consensus 222 ---~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 298 (383)
T 3ulq_A 222 ---LMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAG 298 (383)
T ss_dssp ---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC
Confidence 01123444455555555555555555555443222112 223445555555555555555555555544322 1
Q ss_pred CCCchhhHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 394 VTPNTITWSSLINACANAGL---VEQAMHLFEEMLQAGCEPN-SQCCNILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 394 ~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
-......+..+...|...|+ .++|..++++. +..|+ ...+..+...|.+.|++++|.+.|++..+
T Consensus 299 ~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 299 DVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp CHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11111223444455555555 44444444443 21222 23445555666666666666666665544
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=4.4e-10 Score=106.15 Aligned_cols=245 Identities=9% Similarity=-0.024 Sum_probs=148.7
Q ss_pred hhhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCC---C
Q 008265 69 SRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGV---A 145 (572)
Q Consensus 69 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~---~ 145 (572)
.....+..+...+...|++++|+.+|+.+.+...............++..+...+...|++++|+..+++..+..- .
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 3478899999999999999999999999987421100000111355667778889999999999999998877510 0
Q ss_pred CcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhC------CCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCC
Q 008265 146 PLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEF------RLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR 219 (572)
Q Consensus 146 p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 219 (572)
++... ....+......+...|++++|+..+++..+. +..+.....+..+...+...|++++|+++++....
T Consensus 105 ~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 181 (311)
T 3nf1_A 105 KDHPA---VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE 181 (311)
T ss_dssp TTCHH---HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCChH---HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11111 2222233333445689999999999988765 33344556677888888999999998888766311
Q ss_pred ---------c---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------CCC-------cHHHHHHHHHHHHhcCCHH
Q 008265 220 ---------A---DILFCNFVREFGKKRDLVSALRAYDASKKHL-------SSP-------NMYICRTIIDVCGICGDYM 273 (572)
Q Consensus 220 ---------~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-------~~~-------~~~~~~~ll~~~~~~g~~~ 273 (572)
. ..++..+...|...|++++|.+.|++..+.. ..+ ....+..+...+...+.+.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (311)
T 3nf1_A 182 IYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFG 261 (311)
T ss_dssp HHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSC
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHH
Confidence 1 2567778888889999999999888876521 111 1112222333334444455
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhc--CChHHHHHHHHHHHH
Q 008265 274 KSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQK 317 (572)
Q Consensus 274 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~a~~~~~~m~~ 317 (572)
++...+....... +.+..++..+..++. |++++|...|++..+
T Consensus 262 ~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 262 EYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp CCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5555555554331 122344555544443 788888888887765
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.22 E-value=1.8e-08 Score=95.05 Aligned_cols=182 Identities=15% Similarity=0.095 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-H-HHHHHHHHh--cCChHHHHHHHH
Q 008265 238 VSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI-Y-VFNSLMNVN--AHDLKFTLEVYK 313 (572)
Q Consensus 238 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~-~~~~ll~~~--~~~~~~a~~~~~ 313 (572)
++|..+|++..+.-.+-+...|..+...+.+.|++++|.++|++..+. .|+. . .|..+...+ .|++++|..+|+
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 158 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 677777777666311224456777777777777777777777777664 3321 1 333333332 244555555555
Q ss_pred HHHHcCCCCCHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHC
Q 008265 314 NMQKLGVMADMASYNILLKACC-LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (572)
Q Consensus 314 ~m~~~~~~~~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 392 (572)
+..+.... +...|........ ..|+.++|..+|+...+.. +-+...|..++..+.+.|++++|..+|++....
T Consensus 159 ~a~~~~p~-~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-----GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHhcCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 55443221 2222322222211 1455666666665555431 223445555555555555666666666555554
Q ss_pred C-CCC--chhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 393 G-VTP--NTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 393 g-~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
. +.| ....|..++..+.+.|+.++|..+++++.+.
T Consensus 233 ~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 233 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp SSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2 232 2334555555555555555555555555543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.1e-09 Score=105.12 Aligned_cols=210 Identities=8% Similarity=-0.047 Sum_probs=152.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008265 224 FCNFVREFGKKRDLVSALRAYDASKKH----LSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298 (572)
Q Consensus 224 ~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 298 (572)
+......+...|++++|...|+...+. +-.+ ...+|..+...|...|++++|...+++..+.
T Consensus 106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~------------- 172 (383)
T 3ulq_A 106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEI------------- 172 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------------
Confidence 334667788889999999999988663 1111 2457888888899999999999988876542
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccc
Q 008265 299 NVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFADAK 377 (572)
Q Consensus 299 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g 377 (572)
+..... .......+++.+...|...|++++|...|.+..+......-.+ ...++..+...|...|
T Consensus 173 -------------~~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g 238 (383)
T 3ulq_A 173 -------------YKEHEA-YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQS 238 (383)
T ss_dssp -------------HHTCST-THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred -------------HHhCcc-chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCC
Confidence 111000 0001234677888899999999999999999887643321111 2348999999999999
Q ss_pred cHHHHHHHHHHHHHC----CC-CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHHhCC
Q 008265 378 WWQMALKVKEDMLSA----GV-TPNTITWSSLINACANAGLVEQAMHLFEEMLQA----GCEPNSQCCNILLQACVEACQ 448 (572)
Q Consensus 378 ~~~~a~~~~~~m~~~----g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~~li~~~~~~g~ 448 (572)
++++|++.+++..+. +. .....++..+...|.+.|++++|...+++..+. +-+.....+..+...+...|+
T Consensus 239 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~ 318 (383)
T 3ulq_A 239 QYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPD 318 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCC
T ss_pred CHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc
Confidence 999999999998772 33 334577899999999999999999999988652 212223345677778888888
Q ss_pred ---HhHHHHHHHHhh
Q 008265 449 ---FDRAFRLFRSWT 460 (572)
Q Consensus 449 ---~~~A~~~~~~m~ 460 (572)
+++|..++++..
T Consensus 319 ~~~~~~al~~~~~~~ 333 (383)
T 3ulq_A 319 EEAIQGFFDFLESKM 333 (383)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCc
Confidence 888888888764
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.21 E-value=1.5e-08 Score=95.68 Aligned_cols=217 Identities=15% Similarity=0.092 Sum_probs=168.3
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-------hcCCH-------HHHHHHHHHHHhCCCCC-CHHHHHHHHHHh-
Q 008265 238 VSALRAYDASKKHLSSPNMYICRTIIDVCG-------ICGDY-------MKSRAIYEDLRSQNVTL-NIYVFNSLMNVN- 301 (572)
Q Consensus 238 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~-------~~g~~-------~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~- 301 (572)
+.|..+|++..+.. +-+...|..+...+. +.|++ ++|..+|++..+. +.| +...|..+...+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHH
Confidence 67888998887753 346677877777765 35886 9999999999983 134 455677766654
Q ss_pred -cCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-cccc
Q 008265 302 -AHDLKFTLEVYKNMQKLGVMADMA-SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA-DAKW 378 (572)
Q Consensus 302 -~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~ 378 (572)
.|++++|..+|++..+.... +.. .|..+...+.+.|++++|..+|++..+.. +.+...|........ ..|+
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-----p~~~~~~~~~a~~~~~~~~~ 184 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-----RTRHHVYVTAALMEYYCSKD 184 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-----TCCTHHHHHHHHHHHHTSCC
T ss_pred hcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHHcCC
Confidence 48999999999999985322 233 89999999999999999999999998631 234445544433322 3699
Q ss_pred HHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHHhCCHhHHHHH
Q 008265 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG-CEP--NSQCCNILLQACVEACQFDRAFRL 455 (572)
Q Consensus 379 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p--~~~~~~~li~~~~~~g~~~~A~~~ 455 (572)
+++|..+|++..+... -+...|..++..+.+.|+.++|..+|++..+.. +.| ....|..++....+.|+.+.|..+
T Consensus 185 ~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~ 263 (308)
T 2ond_A 185 KSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKV 263 (308)
T ss_dssp HHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999987632 256788999999999999999999999999863 455 467899999999999999999999
Q ss_pred HHHhhhcc
Q 008265 456 FRSWTLSK 463 (572)
Q Consensus 456 ~~~m~~~~ 463 (572)
++++.+..
T Consensus 264 ~~~a~~~~ 271 (308)
T 2ond_A 264 EKRRFTAF 271 (308)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 99987654
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.20 E-value=6e-09 Score=89.97 Aligned_cols=167 Identities=14% Similarity=0.032 Sum_probs=103.8
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008265 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334 (572)
Q Consensus 255 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 334 (572)
+...|..+-..|.+.|++++|++.|++..+.. |+ +...+..+..+|
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~--p~--------------------------------~~~~~~~la~~~ 49 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD--PN--------------------------------NVETLLKLGKTY 49 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TT--------------------------------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC--------------------------------CHHHHHHHHHHH
Confidence 45677777777777788888877777776541 22 344555566666
Q ss_pred HHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCH
Q 008265 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414 (572)
Q Consensus 335 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 414 (572)
.+.|++++|...+...... .+.+...+..+...+...++++.|.+.+.+..+.... +...+..+...|.+.|++
T Consensus 50 ~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~ 123 (184)
T 3vtx_A 50 MDIGLPNDAIESLKKFVVL-----DTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEH 123 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHCCCHHHHHHHHHHHHhc-----CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCc
Confidence 6666666666666666542 1334445555556666666666666666666554222 445566666666666666
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhc
Q 008265 415 EQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (572)
Q Consensus 415 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 462 (572)
++|++.|++..+.. +.+..+|..+..+|.+.|++++|.+.|++..+.
T Consensus 124 ~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 124 DKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 66666666666543 334566666666666667777776666665543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.7e-09 Score=108.68 Aligned_cols=215 Identities=9% Similarity=-0.052 Sum_probs=143.8
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHhc--CChHHHHHHHH
Q 008265 237 LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDY-MKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYK 313 (572)
Q Consensus 237 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~a~~~~~ 313 (572)
++++...++..... .+.+...|..+...|...|++ ++|.+.|++..+.. +-+...|..+-.++. |++++|...|+
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34444444443332 122445555555555566666 66666665555442 112334443333322 55666666666
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc--------
Q 008265 314 NMQKLGVMADMASYNILLKACCLA---------GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA-------- 376 (572)
Q Consensus 314 ~m~~~~~~~~~~~~~~ll~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-------- 376 (572)
+..+. .|+...+..+...|... |++++|+..|++..+. .+.+...|..+..+|...
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~~~~~~~~~ 234 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM-----DVLDGRSWYILGNAYLSLYFNTGQNP 234 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHHHhhcccc
Confidence 65553 34556666677777777 8889999999988874 234577888888888888
Q ss_pred ccHHHHHHHHHHHHHCCCC--CchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHH
Q 008265 377 KWWQMALKVKEDMLSAGVT--PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454 (572)
Q Consensus 377 g~~~~a~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 454 (572)
|++++|++.|++..+.... -+...|..+..+|...|++++|.+.|++..+.. +-+...+..+..++...|++++|.+
T Consensus 235 g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 235 KISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999998876220 266788889999999999999999999988764 4456778888888888999998888
Q ss_pred HHHHhhh
Q 008265 455 LFRSWTL 461 (572)
Q Consensus 455 ~~~~m~~ 461 (572)
.+.++..
T Consensus 314 ~~~~~~~ 320 (474)
T 4abn_A 314 SKGKTKP 320 (474)
T ss_dssp HTTTCCH
T ss_pred HhccccC
Confidence 7765543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.20 E-value=7e-10 Score=111.48 Aligned_cols=215 Identities=12% Similarity=-0.017 Sum_probs=136.6
Q ss_pred hhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCH-HHHHHHHHH
Q 008265 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDL-VSALRAYDA 246 (572)
Q Consensus 168 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~ 246 (572)
.+.+++++..++..... .+.+...+..+...+...| ++ ++|++.|++
T Consensus 81 ~~~~~~al~~l~~~~~~--~~~~a~~~~~lg~~~~~~g------------------------------~~~~~A~~~~~~ 128 (474)
T 4abn_A 81 QEEMEKTLQQMEEVLGS--AQVEAQALMLKGKALNVTP------------------------------DYSPEAEVLLSK 128 (474)
T ss_dssp HHHHHHHHHHHHHHHTT--CCCCHHHHHHHHHHHTSSS------------------------------SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc--CchhHHHHHHHHHHHHhcc------------------------------ccHHHHHHHHHH
Confidence 35677788877776543 3444444444444444444 44 455555554
Q ss_pred HHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh--c---------CChHHHHHHHHHH
Q 008265 247 SKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--A---------HDLKFTLEVYKNM 315 (572)
Q Consensus 247 m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~--~---------~~~~~a~~~~~~m 315 (572)
..+... -+...|..+...|.+.|++++|.+.|++..+. .|+...+..+-..+ . |++++|+..|++.
T Consensus 129 al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~a 205 (474)
T 4abn_A 129 AVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLA 205 (474)
T ss_dssp HHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHH
Confidence 444321 13445555555555555555555555555544 23333333332222 2 3456666666666
Q ss_pred HHcCCCCCHHHHHHHHHHHHHc--------CChHHHHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHccccHHHHHH
Q 008265 316 QKLGVMADMASYNILLKACCLA--------GNTVLAQEIYGEVKHLEAKGVLK---LDVFTYSTIVKVFADAKWWQMALK 384 (572)
Q Consensus 316 ~~~~~~~~~~~~~~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~ 384 (572)
.+.... +...|..+..+|... |++++|...|++..+.. + .+...|..+..+|...|++++|++
T Consensus 206 l~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~~~~lg~~~~~~g~~~~A~~ 279 (474)
T 4abn_A 206 VQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-----RKASSNPDLHLNRATLHKYEESYGEALE 279 (474)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-----GGGGGCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-----CCcccCHHHHHHHHHHHHHcCCHHHHHH
Confidence 654332 567788888888887 88999999999998741 2 377889999999999999999999
Q ss_pred HHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 008265 385 VKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424 (572)
Q Consensus 385 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 424 (572)
.|++..+.... +...+..+...+...|++++|.+.+..+
T Consensus 280 ~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 280 GFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99998876322 4567888888888888888888765443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.19 E-value=5.6e-07 Score=93.09 Aligned_cols=385 Identities=8% Similarity=-0.017 Sum_probs=231.6
Q ss_pred chhhhcccCCchhhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCC---hhHHHH
Q 008265 58 ALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGR---IDCVVG 134 (572)
Q Consensus 58 ~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~---~~~A~~ 134 (572)
.+-+.+..+|.. ...|..++..+.+.+.++.+..+|+.+...-+.. ...+...+..-.+.++ ++.+..
T Consensus 54 ~lE~~l~~np~d-~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~--------~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 54 KLNDMIEEQPTD-IFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLM--------ANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp HHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred HHHHHHHHCcCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCC--------HHHHHHHHHHHHhhCCcchHHHHHH
Confidence 366677777865 9999999999999999999999999999884431 2223333444456677 999999
Q ss_pred HHHHhhhcCC-CCcchhhhhhhHHHHHHHHHHhh-----hhhHHHHHHHHHHHHh-CCC-CCcccchHHHHHHHHhc---
Q 008265 135 VLKKLNELGV-APLELFDGSGFKLLKNECQRLLD-----SGEVEMFVGLMEVLEE-FRL-PVKELDEEFRIVQLCVN--- 203 (572)
Q Consensus 135 ~~~~m~~~~~-~p~~~~~~~~~~~l~~~~~~~~~-----~g~~~~a~~~~~~~~~-~~~-~~~~~~~~~~ll~~~~~--- 203 (572)
+|++...... .|+.. +...+++-...... .+..+...++|+..+. .|. .+.....|...+.-...
T Consensus 125 lfeRal~~~~~~~sv~----LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~ 200 (679)
T 4e6h_A 125 VLARCLSKELGNNDLS----LWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKP 200 (679)
T ss_dssp HHHHHTCSSSCCCCHH----HHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHhcCCCCCHH----HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccc
Confidence 9999988741 24443 33333332222111 1123445577776443 465 56655667766654432
Q ss_pred ------CCChHHHHHhhhcCCC---c--hhHHH---HHHHHH----------HhcCCHHHHHHHHHHHHhc--CCC----
Q 008265 204 ------KPDVNLAIRYACIVPR---A--DILFC---NFVREF----------GKKRDLVSALRAYDASKKH--LSS---- 253 (572)
Q Consensus 204 ------~g~~~~a~~~~~~~~~---~--~~~~~---~li~~~----------~~~g~~~~a~~~~~~m~~~--~~~---- 253 (572)
+++++.+.++|+.... . ..+|. .+-... -...+++.|..++.++... ++.
T Consensus 201 ~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p 280 (679)
T 4e6h_A 201 VNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLP 280 (679)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCC
T ss_pred cCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccc
Confidence 3346677777776432 2 12332 221111 0112344455555543211 111
Q ss_pred -----------C-----c---HHHHHHHHHHHHhcC-------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--hcCCh
Q 008265 254 -----------P-----N---MYICRTIIDVCGICG-------DYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDL 305 (572)
Q Consensus 254 -----------~-----~---~~~~~~ll~~~~~~g-------~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~--~~~~~ 305 (572)
| + ...|...+..--..+ ..+.+..+|++.... ++-+...|-..... ..++.
T Consensus 281 ~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~ 359 (679)
T 4e6h_A 281 ITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTD 359 (679)
T ss_dssp SSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCC
T ss_pred cccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcH
Confidence 1 0 235555555433322 123455667776654 12244444444443 23677
Q ss_pred HHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH-------hCCCCC------------CHHH
Q 008265 306 KFTL-EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA-------KGVLKL------------DVFT 365 (572)
Q Consensus 306 ~~a~-~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~------------~~~~ 365 (572)
++|. .+|+..... ++.+...|-..+...-+.|+++.|..+|+.+..... .+ .| ...+
T Consensus 360 ~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~--~p~~~~~~~~~~~~~~~v 436 (679)
T 4e6h_A 360 STVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMED--DPTNESAINQLKSKLTYV 436 (679)
T ss_dssp TTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhc--cCcchhhhhhhccchHHH
Confidence 7886 889888764 334666677788888889999999999998876310 00 13 1346
Q ss_pred HHHHHHHHHccccHHHHHHHHHHHHHC-CCCCchhhHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008265 366 YSTIVKVFADAKWWQMALKVKEDMLSA-GVTPNTITWSSLINACANA-GLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443 (572)
Q Consensus 366 ~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 443 (572)
|...+....+.|+.+.|..+|....+. +. .....|...+..-.+. ++.+.|..+|+...+. ++-+...+...++-.
T Consensus 437 Wi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe 514 (679)
T 4e6h_A 437 YCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFL 514 (679)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHH
Confidence 888888888889999999999998875 21 1222332222222233 4589999999998876 344666677888888
Q ss_pred HHhCCHhHHHHHHHHhhh
Q 008265 444 VEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 444 ~~~g~~~~A~~~~~~m~~ 461 (572)
...|+.+.|..+|++...
T Consensus 515 ~~~~~~~~AR~lferal~ 532 (679)
T 4e6h_A 515 IYVNEESQVKSLFESSID 532 (679)
T ss_dssp HHHTCHHHHHHHHHHHTT
T ss_pred HhCCCHHHHHHHHHHHHH
Confidence 888999999999988764
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.18 E-value=3.4e-08 Score=96.26 Aligned_cols=209 Identities=11% Similarity=0.029 Sum_probs=117.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CC-CC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 008265 222 ILFCNFVREFGKKRDLVSALRAYDASKKH----LS-SP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFN 295 (572)
Q Consensus 222 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~-~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 295 (572)
.++..+...|...|+++.|...+.+..+. +. .+ ...+++.+...|...|++++|.+.|++..+.
T Consensus 142 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~---------- 211 (378)
T 3q15_A 142 EFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALEL---------- 211 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH----------
Confidence 56777888888888888888888776542 11 11 2457778888888889999998888877542
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008265 296 SLMNVNAHDLKFTLEVYKNMQKLGVM-ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374 (572)
Q Consensus 296 ~ll~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 374 (572)
. .+.+-. ....++..+...|...|++++|...|++..........+....++..+...|.
T Consensus 212 ----------------~---~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 272 (378)
T 3q15_A 212 ----------------A---MDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLC 272 (378)
T ss_dssp ----------------H---HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred ----------------H---HHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHH
Confidence 0 000000 01234455555666666666666666665543221112223456666666666
Q ss_pred ccccHHHHHHHHHHHHHCCC----CCchhhHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHh
Q 008265 375 DAKWWQMALKVKEDMLSAGV----TPNTITWSSLINACANAGL---VEQAMHLFEEMLQAGCEPN-SQCCNILLQACVEA 446 (572)
Q Consensus 375 ~~g~~~~a~~~~~~m~~~g~----~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~ 446 (572)
+.|++++|...+++..+... ......+..+...|...++ +.+|..++++ .+..|+ ...+..+...|.+.
T Consensus 273 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~ 349 (378)
T 3q15_A 273 KAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESS 349 (378)
T ss_dssp HTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHC
Confidence 66666666666666554321 1112233444444445555 4455554444 221222 23445566666777
Q ss_pred CCHhHHHHHHHHhhhc
Q 008265 447 CQFDRAFRLFRSWTLS 462 (572)
Q Consensus 447 g~~~~A~~~~~~m~~~ 462 (572)
|++++|...|++..+.
T Consensus 350 g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 350 CHFEQAAAFYRKVLKA 365 (378)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 7777777777665543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.17 E-value=6.5e-07 Score=92.61 Aligned_cols=413 Identities=8% Similarity=0.009 Sum_probs=255.0
Q ss_pred hhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHh
Q 008265 87 LEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLL 166 (572)
Q Consensus 87 ~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~ 166 (572)
..+.+..|+..+...+ . +...+..++..+.+.+.++.+..+|+.+... .|. ....+.+.+..-.
T Consensus 48 ~~d~i~~lE~~l~~np--~------d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~------~~~lW~~Yi~~E~ 111 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQP--T------DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPL------MANIWCMRLSLEF 111 (679)
T ss_dssp CSCHHHHHHHHHHHCT--T------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT------CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCc--C------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCC------CHHHHHHHHHHHH
Confidence 3445555666655533 2 1445556666667788999999999999887 454 3333333333334
Q ss_pred hhhh---HHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCCh--------HHHHHhhhc--------CCCchhHHHHH
Q 008265 167 DSGE---VEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDV--------NLAIRYACI--------VPRADILFCNF 227 (572)
Q Consensus 167 ~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~--------~~a~~~~~~--------~~~~~~~~~~l 227 (572)
+.++ .+.+..+|++.......++++..|..-+.-..+.++. +...++|+. -+.....|...
T Consensus 112 ~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Y 191 (679)
T 4e6h_A 112 DKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEY 191 (679)
T ss_dssp TC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHH
T ss_pred hhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 5677 9999999999887653235556777666544443332 223345543 23445778777
Q ss_pred HHHHH---------hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh-------------cCCHHHHHHHHHHHHhC
Q 008265 228 VREFG---------KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGI-------------CGDYMKSRAIYEDLRSQ 285 (572)
Q Consensus 228 i~~~~---------~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-------------~g~~~~a~~~~~~m~~~ 285 (572)
+.... ..++++.+..+|+.........-..+|......-.. ..+++.|...+.++...
T Consensus 192 i~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~ 271 (679)
T 4e6h_A 192 LHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNI 271 (679)
T ss_dssp HHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 76654 244678899999998863111122344322221111 11234455555543211
Q ss_pred --CCC---------------C-----C---HHHHHHHHHHhcCC---------hHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008265 286 --NVT---------------L-----N---IYVFNSLMNVNAHD---------LKFTLEVYKNMQKLGVMADMASYNILL 331 (572)
Q Consensus 286 --g~~---------------p-----~---~~~~~~ll~~~~~~---------~~~a~~~~~~m~~~~~~~~~~~~~~ll 331 (572)
++. | + ...|...+.---.+ ...+..+|++..... +-+...|-..+
T Consensus 272 ~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya 350 (679)
T 4e6h_A 272 TKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMA 350 (679)
T ss_dssp TTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHH
T ss_pred HHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHH
Confidence 211 1 1 13444444432222 233556788877653 33778888888
Q ss_pred HHHHHcCChHHHH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCC---------CCc----
Q 008265 332 KACCLAGNTVLAQ-EIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV---------TPN---- 397 (572)
Q Consensus 332 ~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~---------~p~---- 397 (572)
.-+...|+.++|. .+|+..... ++.+...|-..+....+.|++++|.++|+.+.+... .|+
T Consensus 351 ~~~~~~~~~~~a~r~il~rAi~~-----~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~ 425 (679)
T 4e6h_A 351 NYQGEKNTDSTVITKYLKLGQQC-----IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESA 425 (679)
T ss_dssp HHHHHHSCCTTHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhh
Confidence 8888899999996 999998763 455677788888889999999999999999876410 132
Q ss_pred --------hhhHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHh-CCHhHHHHHHHHhhhcccccc
Q 008265 398 --------TITWSSLINACANAGLVEQAMHLFEEMLQA-GCEPNSQCCNILLQACVEA-CQFDRAFRLFRSWTLSKTQVA 467 (572)
Q Consensus 398 --------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~ 467 (572)
...|...+....+.|..+.|..+|.+..+. + ......|......-.+. ++.+.|.++|+...+.-
T Consensus 426 ~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~---- 500 (679)
T 4e6h_A 426 INQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF---- 500 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH----
T ss_pred hhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC----
Confidence 236888888888899999999999999875 2 22333443332222333 45899999999876531
Q ss_pred cccccCCchHHHHhhhhhccccccCCCCcccCCccchhhhhcCCCCCHHHHHHHHHHHhh--cHHHHHHHHHHHHhCCCC
Q 008265 468 LGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLS 545 (572)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~a~~~--~~~~a~~~~~~m~~~g~~ 545 (572)
.-+...|..+++-... +.+.|..+|++.......
T Consensus 501 --------------------------------------------p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 501 --------------------------------------------ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp --------------------------------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred --------------------------------------------CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 2345556666654443 568888899888775432
Q ss_pred C--CHHHHHHHHHHHHccCCccccccc
Q 008265 546 P--NHISWTILIDACGGSGNVEGALQC 570 (572)
Q Consensus 546 p--~~~~~~~l~~~~~~~g~~~~a~~~ 570 (572)
+ ....|...+.--.+.|+.+.+.++
T Consensus 537 ~~~~~~lw~~~~~fE~~~G~~~~~~~v 563 (679)
T 4e6h_A 537 SHLLKMIFQKVIFFESKVGSLNSVRTL 563 (679)
T ss_dssp TTHHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 2 234677777777778888776554
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.13 E-value=3.2e-08 Score=96.18 Aligned_cols=284 Identities=14% Similarity=0.002 Sum_probs=179.5
Q ss_pred hhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHH
Q 008265 119 GIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIV 198 (572)
Q Consensus 119 ~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll 198 (572)
....+...|++++|...+++........+.......+..+. ..+...|++++|...+++........
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~---~~~~~~g~~~~A~~~~~~al~~~~~~---------- 86 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLG---EVLHCKGELTRSLALMQQTEQMARQH---------- 86 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHH---HHHHHHTCHHHHHHHHHHHHHHHHHT----------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHH---HHHHhcCcHHHHHHHHHHHHHHHHhc----------
Confidence 34456688999999999999877531111111111222222 22344799999999888765421110
Q ss_pred HHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC--C-cHHHHHHHHHHHHhcCC
Q 008265 199 QLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKH----LSS--P-NMYICRTIIDVCGICGD 271 (572)
Q Consensus 199 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~--~-~~~~~~~ll~~~~~~g~ 271 (572)
|+... ...++..+...+...|++++|.+.++...+. +.. | ....+..+...+...|+
T Consensus 87 ------~~~~~----------~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 150 (373)
T 1hz4_A 87 ------DVWHY----------ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR 150 (373)
T ss_dssp ------TCHHH----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTC
T ss_pred ------CcHHH----------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcC
Confidence 11000 0134566778888889999999888876542 221 2 23456667788888999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008265 272 YMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351 (572)
Q Consensus 272 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 351 (572)
+++|...+++........ +......++..+...+...|++++|...+++..
T Consensus 151 ~~~A~~~~~~al~~~~~~-----------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~ 201 (373)
T 1hz4_A 151 LDEAEASARSGIEVLSSY-----------------------------QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLE 201 (373)
T ss_dssp HHHHHHHHHHHHHHTTTS-----------------------------CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcc-----------------------------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999988876531100 111123456667778888899999999998887
Q ss_pred HHHHhCCCCCCHHHHH----HHHHHHHccccHHHHHHHHHHHHHCCCCCc---hhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 008265 352 HLEAKGVLKLDVFTYS----TIVKVFADAKWWQMALKVKEDMLSAGVTPN---TITWSSLINACANAGLVEQAMHLFEEM 424 (572)
Q Consensus 352 ~~~~~~~~~~~~~~~~----~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m 424 (572)
....... .+ ..... ..+..+...|++++|...+++.......+. ...+..+...+...|++++|...+++.
T Consensus 202 ~~~~~~~-~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a 279 (373)
T 1hz4_A 202 NLLGNGK-YH-SDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEEL 279 (373)
T ss_dssp HHHTTSC-CC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhccC-cc-hhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6532211 11 11111 233447788999999999988765432211 224567778888999999999999887
Q ss_pred HHc----CCCCCH-HHHHHHHHHHHHhCCHhHHHHHHHHhhhc
Q 008265 425 LQA----GCEPNS-QCCNILLQACVEACQFDRAFRLFRSWTLS 462 (572)
Q Consensus 425 ~~~----~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 462 (572)
... |..++. .++..+..++...|+.++|...+++....
T Consensus 280 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 280 NENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 642 222222 35666777888999999999999887653
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.2e-07 Score=94.63 Aligned_cols=270 Identities=12% Similarity=0.036 Sum_probs=167.6
Q ss_pred hhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCCh---HHHHHhhhcCCC-chhHHHHHHHHHHhcC-----C
Q 008265 166 LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDV---NLAIRYACIVPR-ADILFCNFVREFGKKR-----D 236 (572)
Q Consensus 166 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~---~~a~~~~~~~~~-~~~~~~~li~~~~~~g-----~ 236 (572)
.+.|++++|+.+|++..+.| +...+..+...|...|+. ++|...|+.... +...+..|...+...| +
T Consensus 14 ~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~ 89 (452)
T 3e4b_A 14 LKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAE 89 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHT----CCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHH
T ss_pred HhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcC
Confidence 34799999999999988765 334566677777778888 899999887643 3345666666555555 7
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHhcC----ChHHHH
Q 008265 237 LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM---KSRAIYEDLRSQNVTLNIYVFNSLMNVNAH----DLKFTL 309 (572)
Q Consensus 237 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~---~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~a~ 309 (572)
+++|...|+...+.|... .+..+...|...+..+ ++.+.+......|. |.....-..+....+ +.+.+.
T Consensus 90 ~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~-~~a~~~Lg~~y~~~~~~~~~~~~a~ 165 (452)
T 3e4b_A 90 HHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY-PEAGLAQVLLYRTQGTYDQHLDDVE 165 (452)
T ss_dssp HHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC-TTHHHHHHHHHHHHTCGGGGHHHHH
T ss_pred HHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC-HHHHHHHHHHHHcCCCcccCHHHHH
Confidence 899999999998876432 5566666676665433 45555555555554 333332223332223 344444
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc----ccHHHH
Q 008265 310 EVYKNMQKLGVMADMASYNILLKACCLAG---NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA----KWWQMA 382 (572)
Q Consensus 310 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~a 382 (572)
.++...... +...+..+...|.+.| +.++|...|+...+ .| .++...+..|...|... +++++|
T Consensus 166 ~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~---~g--~~~a~~~~~Lg~~y~~g~~~~~d~~~A 236 (452)
T 3e4b_A 166 RICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVS---RG--TVTAQRVDSVARVLGDATLGTPDEKTA 236 (452)
T ss_dssp HHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---TT--CSCHHHHHHHHHHHTCGGGSSCCHHHH
T ss_pred HHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHH---CC--CHHHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 444444332 3337778888888899 88889999988876 33 45666656777777654 689999
Q ss_pred HHHHHHHHHCCCCCchhhHHHHHHH-H--HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC-----CHhHHHH
Q 008265 383 LKVKEDMLSAGVTPNTITWSSLINA-C--ANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC-----QFDRAFR 454 (572)
Q Consensus 383 ~~~~~~m~~~g~~p~~~~~~~li~~-~--~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~ 454 (572)
++.|++.. . -+...+..|... + ...++.++|.+.|++..+.| +...+..|...|. .| ++++|.+
T Consensus 237 ~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 237 QALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp HHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred HHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 99999987 3 244556666665 3 45889999999999998876 5667777777776 55 8999999
Q ss_pred HHHHhh
Q 008265 455 LFRSWT 460 (572)
Q Consensus 455 ~~~~m~ 460 (572)
.|++..
T Consensus 309 ~~~~Aa 314 (452)
T 3e4b_A 309 HFEKAV 314 (452)
T ss_dssp HHHTTT
T ss_pred HHHHHh
Confidence 998765
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.06 E-value=1.6e-07 Score=91.21 Aligned_cols=290 Identities=12% Similarity=0.007 Sum_probs=166.5
Q ss_pred hHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCC-Ccchh
Q 008265 72 DYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVA-PLELF 150 (572)
Q Consensus 72 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~ 150 (572)
..+......+...|++++|...+++........+.+ ....++..+...+...|++++|...+++....... ++..
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~- 90 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFY---SRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH- 90 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHH---HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchh---HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHH-
Confidence 334445556677899999999999988764322211 12334555666788899999999999887764211 1111
Q ss_pred hhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHH
Q 008265 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230 (572)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~ 230 (572)
.....+......+...|++++|...+++..+......... .+.....+..+...
T Consensus 91 --~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~------------------------~~~~~~~~~~la~~ 144 (373)
T 1hz4_A 91 --YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQ------------------------LPMHEFLVRIRAQL 144 (373)
T ss_dssp --HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTT------------------------STHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc------------------------CcHHHHHHHHHHHH
Confidence 0111122222233457999999998887654311000000 00011345566777
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCC----CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHH----HHH--
Q 008265 231 FGKKRDLVSALRAYDASKKHLSS----PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN--IYVFN----SLM-- 298 (572)
Q Consensus 231 ~~~~g~~~~a~~~~~~m~~~~~~----~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~----~ll-- 298 (572)
+...|++++|...+++..+.... .....+..+...+...|++++|...+++.....-.++ ..... ...
T Consensus 145 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 224 (373)
T 1hz4_A 145 LWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIY 224 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHH
Confidence 77788888888888776543221 1235667777778888888888888887654311111 11111 111
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHH
Q 008265 299 NVNAHDLKFTLEVYKNMQKLGVMA---DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV-FTYSTIVKVFA 374 (572)
Q Consensus 299 ~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~li~~~~ 374 (572)
....|+.++|...+++.......+ ....+..+...+...|++++|...++............++. ..+..+..++.
T Consensus 225 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~ 304 (373)
T 1hz4_A 225 WQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYW 304 (373)
T ss_dssp HHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHH
Confidence 113467777777776665432111 12245566677778888888888887776543222111122 24555566666
Q ss_pred ccccHHHHHHHHHHHHH
Q 008265 375 DAKWWQMALKVKEDMLS 391 (572)
Q Consensus 375 ~~g~~~~a~~~~~~m~~ 391 (572)
..|+.++|...+++...
T Consensus 305 ~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 305 QAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHTCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHH
Confidence 77777777777766653
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.06 E-value=3.2e-08 Score=85.12 Aligned_cols=134 Identities=13% Similarity=0.046 Sum_probs=103.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHH
Q 008265 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (572)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 402 (572)
+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.++++.+... .+...+.
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ 114 (186)
T 3as5_A 41 DVDVALHLGIAYVKTGAVDRGTELLERSLAD-----APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANP-INFNVRF 114 (186)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-HhHHHHH
Confidence 4566677777788888888888888887763 234566777788888888888888888888776532 3566777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhcc
Q 008265 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463 (572)
Q Consensus 403 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 463 (572)
.+...+...|++++|.++++++.+.. +.+...+..+...+.+.|++++|.+.+++..+..
T Consensus 115 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 115 RLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD 174 (186)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 78888888888888888888887764 4467788888888888899999998888876543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.05 E-value=3e-08 Score=96.56 Aligned_cols=208 Identities=12% Similarity=-0.020 Sum_probs=150.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CC----cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008265 224 FCNFVREFGKKRDLVSALRAYDASKKHLS-SP----NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298 (572)
Q Consensus 224 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 298 (572)
+......+...|++++|...|++..+... .+ ....+..+...|...|+++.|...+++..+.
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~------------- 170 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDI------------- 170 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-------------
Confidence 34456667788999999999988765411 12 2457778888888999999998888876542
Q ss_pred HHhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHcc
Q 008265 299 NVNAHDLKFTLEVYKNMQKLGVM-ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK-GVLKLDVFTYSTIVKVFADA 376 (572)
Q Consensus 299 ~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~ 376 (572)
+.... +.. ....+++.+...|...|++++|...|.+..+.... +.......++..+...|...
T Consensus 171 -------------~~~~~--~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~ 235 (378)
T 3q15_A 171 -------------YQNHP--LYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRS 235 (378)
T ss_dssp -------------HHTST--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred -------------HHhCC--CchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 11000 000 12456777888899999999999999888775332 32334556899999999999
Q ss_pred ccHHHHHHHHHHHHH-----CCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHHhC
Q 008265 377 KWWQMALKVKEDMLS-----AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG----CEPNSQCCNILLQACVEAC 447 (572)
Q Consensus 377 g~~~~a~~~~~~m~~-----~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~p~~~~~~~li~~~~~~g 447 (572)
|++++|++.+++..+ .... ...++..+...|.+.|++++|...+++..+.. -+.....+..+...+...+
T Consensus 236 ~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~ 314 (378)
T 3q15_A 236 GDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETV 314 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSC
T ss_pred CCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCC
Confidence 999999999999887 4322 36778889999999999999999999988632 1222345566666677777
Q ss_pred C---HhHHHHHHHHhh
Q 008265 448 Q---FDRAFRLFRSWT 460 (572)
Q Consensus 448 ~---~~~A~~~~~~m~ 460 (572)
+ +++|..++++..
T Consensus 315 ~~~~~~~al~~~~~~~ 330 (378)
T 3q15_A 315 DERKIHDLLSYFEKKN 330 (378)
T ss_dssp CHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHhCC
Confidence 7 888888887643
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.03 E-value=4.6e-08 Score=84.10 Aligned_cols=164 Identities=9% Similarity=-0.002 Sum_probs=94.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 008265 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (572)
Q Consensus 222 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 301 (572)
..+..+...+...|++++|...|+.+.+.. +.+...+..+...+...|++++|...++++.+.. |
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~------------ 73 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA--P------------ 73 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T------------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--C------------
Confidence 345556666667777777777776665542 2345566666677777777777777776665431 1
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHH
Q 008265 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381 (572)
Q Consensus 302 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 381 (572)
.+...+..+...+...|++++|...++++... .+.+...+..+...+...|++++
T Consensus 74 --------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~~ 128 (186)
T 3as5_A 74 --------------------DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA-----NPINFNVRFRLGVALDNLGRFDE 128 (186)
T ss_dssp --------------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred --------------------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CcHhHHHHHHHHHHHHHcCcHHH
Confidence 13344445555555556666666666555542 12344555555555666666666
Q ss_pred HHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008265 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426 (572)
Q Consensus 382 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 426 (572)
|.+.++++.+... .+...+..+...+...|++++|.+.+++..+
T Consensus 129 A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 129 AIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666665554421 2345555566666666666666666665543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.02 E-value=7.7e-09 Score=95.93 Aligned_cols=223 Identities=12% Similarity=0.052 Sum_probs=140.1
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCCC-HHHHHHHHHHh--cCChHHH
Q 008265 238 VSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ------NVTLN-IYVFNSLMNVN--AHDLKFT 308 (572)
Q Consensus 238 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~------g~~p~-~~~~~~ll~~~--~~~~~~a 308 (572)
++|++++........+....++..+...|...|++++|...|++..+. +-.|. ..++..+-..+ .|++++|
T Consensus 25 ~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 104 (283)
T 3edt_B 25 KQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEA 104 (283)
T ss_dssp HHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHH
Confidence 345555555543322334668889999999999999999999988754 22222 33444444443 3789999
Q ss_pred HHHHHHHHHc-----CC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh--CCCCC-CHHHHHHHHHHHHcccc
Q 008265 309 LEVYKNMQKL-----GV--MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK--GVLKL-DVFTYSTIVKVFADAKW 378 (572)
Q Consensus 309 ~~~~~~m~~~-----~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~-~~~~~~~li~~~~~~g~ 378 (572)
...+.+..+. +. +....++..+...|...|++++|...++++.+.... +...| ...++..+...|...|+
T Consensus 105 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 184 (283)
T 3edt_B 105 EPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGK 184 (283)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC
Confidence 9999888764 22 122456777888888999999999999998875211 10122 34578888888999999
Q ss_pred HHHHHHHHHHHHHC-------CCCCchh-hHHHHHHHHHHcCCH------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008265 379 WQMALKVKEDMLSA-------GVTPNTI-TWSSLINACANAGLV------EQAMHLFEEMLQAGCEPNSQCCNILLQACV 444 (572)
Q Consensus 379 ~~~a~~~~~~m~~~-------g~~p~~~-~~~~li~~~~~~g~~------~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 444 (572)
+++|.+.+++..+. ...+... .|..+...+...+.. .++...+..... .......++..+...|.
T Consensus 185 ~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~ 263 (283)
T 3edt_B 185 YQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTVNTTLRSLGALYR 263 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHH
Confidence 99999999888753 1222222 233333333322222 222222211110 11223457888899999
Q ss_pred HhCCHhHHHHHHHHhhh
Q 008265 445 EACQFDRAFRLFRSWTL 461 (572)
Q Consensus 445 ~~g~~~~A~~~~~~m~~ 461 (572)
+.|++++|..+|++..+
T Consensus 264 ~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 264 RQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999988654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=3.4e-08 Score=103.38 Aligned_cols=130 Identities=14% Similarity=0.081 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHH
Q 008265 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (572)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 403 (572)
..++..+..+|.+.|++++|++.|++..++. +-+...|..+..+|.+.|++++|++.|++..+.... +...|+.
T Consensus 43 ~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-----P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~ 116 (723)
T 4gyw_A 43 AAAHSNLASVLQQQGKLQEALMHYKEAIRIS-----PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA-FADAHSN 116 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 3444455555555555555555555555421 123445555555555555555555555555544211 3345555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhh
Q 008265 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (572)
Q Consensus 404 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (572)
+..+|.+.|++++|++.|++..+.. +-+...+..+..++...|++++|.+.+++..
T Consensus 117 Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal 172 (723)
T 4gyw_A 117 LASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDYDERMKKLV 172 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHHHHHHHHHH
Confidence 5555555555555555555555542 2234555555555556666655555555543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=2.8e-08 Score=104.00 Aligned_cols=164 Identities=9% Similarity=0.005 Sum_probs=95.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008265 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV 300 (572)
Q Consensus 221 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 300 (572)
...++.|...|.+.|++++|++.|++..+... -+...|+.+..+|.+.|++++|++.|++..+. .|+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~---------- 75 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPT---------- 75 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT----------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC----------
Confidence 35677777777777777777777777766432 24567777777777777777777777776654 222
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHH
Q 008265 301 NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380 (572)
Q Consensus 301 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 380 (572)
+...|..+..+|.+.|++++|++.|++..++. +-+...|+.+..+|.+.|+++
T Consensus 76 ----------------------~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~-----P~~~~a~~~Lg~~~~~~g~~~ 128 (723)
T 4gyw_A 76 ----------------------FADAYSNMGNTLKEMQDVQGALQCYTRAIQIN-----PAFADAHSNLASIHKDSGNIP 128 (723)
T ss_dssp ----------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHH
T ss_pred ----------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcCCHH
Confidence 23445555555555555555555555555421 223445555555555555555
Q ss_pred HHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008265 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425 (572)
Q Consensus 381 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 425 (572)
+|++.|++..+.... +...|..+..+|...|++++|.+.+++..
T Consensus 129 eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A~~~~~kal 172 (723)
T 4gyw_A 129 EAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDYDERMKKLV 172 (723)
T ss_dssp HHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHHHHHHHHHH
Confidence 555555555544211 33445555555555555555555555443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.93 E-value=3.9e-07 Score=83.64 Aligned_cols=207 Identities=12% Similarity=0.013 Sum_probs=138.8
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHH
Q 008265 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEV 311 (572)
Q Consensus 232 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~a~~~ 311 (572)
--.|.+..++.-. .+.........---+.++|...|+++.. ..-.|....+..+.....++ ++..
T Consensus 24 fy~G~yq~~i~e~---~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~~~~---a~~~ 88 (310)
T 3mv2_B 24 YYTGNFVQCLQEI---EKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFLDTK---NIEE 88 (310)
T ss_dssp HTTTCHHHHTHHH---HTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHHTTT---CCHH
T ss_pred HHhhHHHHHHHHH---HhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHhccc---HHHH
Confidence 3456776666622 2211122223333455777777776532 11234433444444433333 6677
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHH
Q 008265 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391 (572)
Q Consensus 312 ~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 391 (572)
|++....+ .++..++..+..++...|++++|++++.+... .+...-+...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 89 l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~---~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 89 LENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGID---NDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp HHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---SSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhc---cCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77776654 45666667888999999999999999998754 220013566888899999999999999999999987
Q ss_pred CCCCC-----chhhHHHHHHHH--HHcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 392 AGVTP-----NTITWSSLINAC--ANAG--LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 392 ~g~~p-----~~~~~~~li~~~--~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
. .| +..+...+..++ ...| +..+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6 56 356666666663 3334 899999999999765 46644444555589999999999999997764
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.93 E-value=1.5e-08 Score=93.87 Aligned_cols=159 Identities=9% Similarity=-0.042 Sum_probs=108.7
Q ss_pred hhcCChhHHHHHHHHHHhhc-----C-ChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcC---CCCcchhhh
Q 008265 82 AKDGRLEEFAMIVESVVVSE-----G-NVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELG---VAPLELFDG 152 (572)
Q Consensus 82 ~~~g~~~~A~~~~~~m~~~~-----~-~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~ 152 (572)
...|++++|+.+|++..+.- . .|. ...++..+...+...|++++|+..+++..+.. ..++...
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-- 83 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPD------VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPA-- 83 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH--
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchH--
Confidence 44677888888887776532 1 122 35567778888999999999999999887751 0011111
Q ss_pred hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhC------CCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCC-------
Q 008265 153 SGFKLLKNECQRLLDSGEVEMFVGLMEVLEEF------RLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR------- 219 (572)
Q Consensus 153 ~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~------- 219 (572)
...++......+...|++++|+..+++..+. ...|.....+..+...+...|++++|...++....
T Consensus 84 -~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 162 (283)
T 3edt_B 84 -VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLG 162 (283)
T ss_dssp -HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred -HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 2222333333445689999999999988764 11344556677888888888998888887765311
Q ss_pred -----chhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008265 220 -----ADILFCNFVREFGKKRDLVSALRAYDASKK 249 (572)
Q Consensus 220 -----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 249 (572)
...++..+...|...|++++|...+++..+
T Consensus 163 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 163 PDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 125677788888888888888888887765
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.90 E-value=1.5e-07 Score=86.44 Aligned_cols=184 Identities=13% Similarity=0.021 Sum_probs=111.5
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHH--hcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008265 275 SRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGV-MADMASYNILLKACCLAGNTVLAQEIYGEVK 351 (572)
Q Consensus 275 a~~~~~~m~~~g~~p~~~~~~~ll~~--~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 351 (572)
|...|+++.+.+ .++...+..+-.+ ..|++++|++++.+....|. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555555443 2333333222222 22666666666666554443 1245667777788888888888888888887
Q ss_pred HHHHhCCCCC-----CHHHHHHHHHHHHc----cccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHH
Q 008265 352 HLEAKGVLKL-----DVFTYSTIVKVFAD----AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422 (572)
Q Consensus 352 ~~~~~~~~~~-----~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 422 (572)
+ ..| +..+...|+.++.. .++..+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++
T Consensus 164 ~------~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~ 235 (310)
T 3mv2_B 164 N------AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVE 235 (310)
T ss_dssp H------HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred h------cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHH
Confidence 6 355 24555555555332 33788888888888665 4443333444447788888888888888
Q ss_pred HHHHc-----CC----CCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhcccccccc
Q 008265 423 EMLQA-----GC----EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALG 469 (572)
Q Consensus 423 ~m~~~-----~~----~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 469 (572)
.+.+. +. +-+..+...+|......|+ +|.++++++++..+..+..
T Consensus 236 ~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 236 LLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred HHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 66542 10 2345666566655556676 7788888887766544443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.89 E-value=1.3e-07 Score=76.33 Aligned_cols=130 Identities=15% Similarity=0.163 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHH
Q 008265 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405 (572)
Q Consensus 326 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 405 (572)
.+..+...+...|++++|..+++++.+. .+.+...+..+...+...|++++|...++++.+.+. .+...+..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~ 76 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLG 76 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc-----CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHH
Confidence 4566777888889999999999888763 134667788888888888999999999988877642 2566778888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhc
Q 008265 406 NACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (572)
Q Consensus 406 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 462 (572)
..+...|++++|.++++++.+.. +.+..++..+...+.+.|++++|...++++.+.
T Consensus 77 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 77 NAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 88888999999999999888764 446777888888888999999999998887653
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.89 E-value=4.9e-07 Score=80.87 Aligned_cols=190 Identities=11% Similarity=0.016 Sum_probs=111.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHH
Q 008265 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN-IYVFNSLMN 299 (572)
Q Consensus 221 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~ 299 (572)
...+......+.+.|++++|...|+...+....++...+..+..++...|++++|...|++..+. .|+ ...|..+-.
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~ 84 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHHH
Confidence 35667777788888888888888888777654356666666777888888888888888887765 333 233333333
Q ss_pred Hh--cCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCC---HHHHH
Q 008265 300 VN--AHDLKFTLEVYKNMQKLGVMADM-------ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD---VFTYS 367 (572)
Q Consensus 300 ~~--~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~~~~ 367 (572)
++ .|++++|+..+++..+.... +. ..|..+...+...|++++|+..|++..+ ..|+ ...|.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~~~ 157 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD------VTSKKWKTDALY 157 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT------SSCHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh------cCCCcccHHHHH
Confidence 32 36677777777776654322 33 3455566666667777777777776665 3444 33555
Q ss_pred HHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 368 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
.+...|...|+ .+++++...+.. +...|.... ....+.+++|...+++..+.
T Consensus 158 ~l~~~~~~~~~-----~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 158 SLGVLFYNNGA-----DVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHHHHHH-----HHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----HHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 55555544332 233333332211 222232222 22334466777777776665
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.87 E-value=5.6e-07 Score=80.49 Aligned_cols=192 Identities=10% Similarity=-0.004 Sum_probs=139.9
Q ss_pred CcccchHHHHHHHHhcCCChHHHHHhhhcC----C-CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHH
Q 008265 188 VKELDEEFRIVQLCVNKPDVNLAIRYACIV----P-RADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTI 262 (572)
Q Consensus 188 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 262 (572)
+.++..+..+...+...|++++|+..|+.. | .+...+..+..++...|++++|...|+...+.... +...|..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHH
Confidence 344567888999999999999999998863 4 55667777999999999999999999999886432 56788999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHH-------HHHHHHH--hcCChHHHHHHHHHHHHcCCCCC---HHHHHH
Q 008265 263 IDVCGICGDYMKSRAIYEDLRSQNVTLN-IYV-------FNSLMNV--NAHDLKFTLEVYKNMQKLGVMAD---MASYNI 329 (572)
Q Consensus 263 l~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~-------~~~ll~~--~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~ 329 (572)
...|...|++++|...|++..+. .|+ ... |..+-.. ..|++++|...|++..+ ..|+ ...+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~ 158 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYS 158 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHH
Confidence 99999999999999999999876 343 312 2222222 34899999999999875 6665 345666
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCch
Q 008265 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398 (572)
Q Consensus 330 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 398 (572)
+..+|...| ..+++++... ...+...|.... ....+.+++|+..+++..+. .|+.
T Consensus 159 l~~~~~~~~-----~~~~~~a~~~-----~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~ 213 (228)
T 4i17_A 159 LGVLFYNNG-----ADVLRKATPL-----ASSNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNR 213 (228)
T ss_dssp HHHHHHHHH-----HHHHHHHGGG-----TTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHHHHHH-----HHHHHHHHhc-----ccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCC
Confidence 666665443 4455555543 123444444443 33467789999999999876 4544
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=4.6e-07 Score=84.54 Aligned_cols=209 Identities=9% Similarity=-0.042 Sum_probs=142.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008265 224 FCNFVREFGKKRDLVSALRAYDASKKH----LSSPN-MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298 (572)
Q Consensus 224 ~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 298 (572)
|......|...|++++|...|.+..+. |-.++ ..+|+.+..+|.+.|++++|+..|++..+..
T Consensus 40 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~------------ 107 (292)
T 1qqe_A 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIF------------ 107 (292)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH------------
Confidence 344466777888888888888766442 21111 4578888888888889988888888776420
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcc
Q 008265 299 NVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA-GNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTIVKVFADA 376 (572)
Q Consensus 299 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~ 376 (572)
...|+...+ ..++..+...|... |++++|+..|++..++......... ..++..+...+.+.
T Consensus 108 -~~~g~~~~~---------------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~ 171 (292)
T 1qqe_A 108 -THRGQFRRG---------------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALD 171 (292)
T ss_dssp -HHTTCHHHH---------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred -HHcCCHHHH---------------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHh
Confidence 001111111 33567778888886 9999999999999875422210111 35688889999999
Q ss_pred ccHHHHHHHHHHHHHCCCCCchh------hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHH
Q 008265 377 KWWQMALKVKEDMLSAGVTPNTI------TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS------QCCNILLQACV 444 (572)
Q Consensus 377 g~~~~a~~~~~~m~~~g~~p~~~------~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~------~~~~~li~~~~ 444 (572)
|++++|+..|++..+........ .|..+..++...|++++|...|++..+. .|+. ..+..++.++.
T Consensus 172 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~ 249 (292)
T 1qqe_A 172 GQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVN 249 (292)
T ss_dssp TCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHH
Confidence 99999999999998864332221 5677888899999999999999998753 3332 23445566664
Q ss_pred --HhCCHhHHHHHHHHhhhc
Q 008265 445 --EACQFDRAFRLFRSWTLS 462 (572)
Q Consensus 445 --~~g~~~~A~~~~~~m~~~ 462 (572)
..+++++|...|+++...
T Consensus 250 ~~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 250 EGDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp TTCTTTHHHHHHHHTTSSCC
T ss_pred cCCHHHHHHHHHHhccCCcc
Confidence 356788898888776543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.76 E-value=6.9e-07 Score=83.37 Aligned_cols=159 Identities=10% Similarity=0.023 Sum_probs=116.9
Q ss_pred cCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHH
Q 008265 302 AHDLKFTLEVYKNMQKL----GVMAD-MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL--DVFTYSTIVKVFA 374 (572)
Q Consensus 302 ~~~~~~a~~~~~~m~~~----~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~~~~~li~~~~ 374 (572)
.|++++|...|.+..+. |-.++ ..+|+.+..+|.+.|++++|+..|++..++....+ .+ -..+++.+...|.
T Consensus 50 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~lg~~~~ 128 (292)
T 1qqe_A 50 RKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG-QFRRGANFKFELGEILE 128 (292)
T ss_dssp TTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHH
Confidence 35566666555554332 21111 45788889999999999999999999887543221 11 1457888999999
Q ss_pred cc-ccHHHHHHHHHHHHHCCCCC-c----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHH
Q 008265 375 DA-KWWQMALKVKEDMLSAGVTP-N----TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS------QCCNILLQA 442 (572)
Q Consensus 375 ~~-g~~~~a~~~~~~m~~~g~~p-~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~------~~~~~li~~ 442 (572)
.. |++++|+..|++..+..... + ..++..+...+.+.|++++|...|++..+....... ..|..+..+
T Consensus 129 ~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 208 (292)
T 1qqe_A 129 NDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLC 208 (292)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHH
T ss_pred HhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHH
Confidence 96 99999999999887641110 1 356888999999999999999999999875432221 257778888
Q ss_pred HHHhCCHhHHHHHHHHhhh
Q 008265 443 CVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 443 ~~~~g~~~~A~~~~~~m~~ 461 (572)
+...|++++|...|++..+
T Consensus 209 ~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 209 QLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHTTCHHHHHHHHHGGGC
T ss_pred HHHcCCHHHHHHHHHHHHh
Confidence 9999999999999998764
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.69 E-value=3.3e-06 Score=75.30 Aligned_cols=194 Identities=6% Similarity=-0.050 Sum_probs=126.9
Q ss_pred hhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchh
Q 008265 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (572)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 150 (572)
...+..+...+...|++++|+..|+.+.+..+... ....++..+...+.+.|++++|+..|+++.+. .|+...
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~-----~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~ 76 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGP-----YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPN 76 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST-----THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-----HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCc
Confidence 35566677888999999999999999998744311 11345666778899999999999999999886 454321
Q ss_pred hhhhhHHHHHHHHH---------------HhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhh
Q 008265 151 DGSGFKLLKNECQR---------------LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYAC 215 (572)
Q Consensus 151 ~~~~~~~l~~~~~~---------------~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 215 (572)
....+-.+..++.. ..+.|+.++|+..|+++.+. .|.+...+........ .....
T Consensus 77 ~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~----~~~~~---- 146 (225)
T 2yhc_A 77 IDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVF----LKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHH----HHHHH----
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHH----HHHHH----
Confidence 11111111111111 11357899999999988865 3554443332211100 00000
Q ss_pred cCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008265 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPN--MYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286 (572)
Q Consensus 216 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 286 (572)
......+...|.+.|++++|...|+.+.+...... ...+..+..+|.+.|++++|.+.++.+...+
T Consensus 147 -----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 -----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred -----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 01223567788899999999999999887643211 2567888899999999999999999888763
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.8e-06 Score=79.00 Aligned_cols=185 Identities=11% Similarity=-0.005 Sum_probs=86.9
Q ss_pred CcccchHHHHHHHHhcCCChHHHHHhhhcC----CCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CC-cHHH
Q 008265 188 VKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRA---DILFCNFVREFGKKRDLVSALRAYDASKKHLS-SP-NMYI 258 (572)
Q Consensus 188 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~-~~~~ 258 (572)
+.+...+..+...+.+.|++++|+..|+.+ |.+ ...+..+..+|.+.|++++|...|+...+... .| ....
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 334444445555555555555555555443 222 23445555555555555555555555554321 11 1233
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 008265 259 CRTIIDVCGI--------CGDYMKSRAIYEDLRSQNVTLNI-YVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNI 329 (572)
Q Consensus 259 ~~~ll~~~~~--------~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 329 (572)
+..+..++.+ .|++++|...|+++.+.. |+. ... .+...+..+... ....+..
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~------------~a~~~~~~~~~~----~~~~~~~ 153 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVD------------DATQKIRELRAK----LARKQYE 153 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHH------------HHHHHHHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHH------------HHHHHHHHHHHH----HHHHHHH
Confidence 4444444555 555555555555554431 211 000 000000000000 0111344
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc----------ccHHHHHHHHHHHHHC
Q 008265 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA----------KWWQMALKVKEDMLSA 392 (572)
Q Consensus 330 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~ 392 (572)
+...|.+.|++++|+..|+.+.+..... ......+..+..+|... |++++|...|+++.+.
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDT--PWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTS--TTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCC--chHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 5566667777777777777766521000 01233555556666544 6666777777666654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.68 E-value=2e-06 Score=69.06 Aligned_cols=130 Identities=15% Similarity=0.155 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 008265 258 ICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337 (572)
Q Consensus 258 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 337 (572)
.|..+...+...|++++|..+|+++.+. +. .+...+..+...+...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------------------------------~~-~~~~~~~~~a~~~~~~ 48 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL---------------------------------DP-RSAEAWYNLGNAYYKQ 48 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH---------------------------------CT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc---------------------------------CC-cchhHHHHHHHHHHHh
Confidence 3455555666666666666666665543 21 1344555556666666
Q ss_pred CChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHH
Q 008265 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQA 417 (572)
Q Consensus 338 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 417 (572)
|++++|...++++... .+.+...+..+...+...|++++|.+.++++.+... .+...+..+...+.+.|++++|
T Consensus 49 ~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A 122 (136)
T 2fo7_A 49 GDYDEAIEYYQKALEL-----DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEA 122 (136)
T ss_dssp TCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHH
T ss_pred cCHHHHHHHHHHHHHH-----CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHH
Confidence 6666666666666542 133455566666666666677777666666665432 2445566666666667777777
Q ss_pred HHHHHHHHHc
Q 008265 418 MHLFEEMLQA 427 (572)
Q Consensus 418 ~~~~~~m~~~ 427 (572)
...++++.+.
T Consensus 123 ~~~~~~~~~~ 132 (136)
T 2fo7_A 123 IEYYQKALEL 132 (136)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHcc
Confidence 7776666543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.5e-06 Score=79.45 Aligned_cols=194 Identities=10% Similarity=-0.013 Sum_probs=132.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCC-C---HHHHHHHHHHHHccccHHHHHHHHHHHHHCCC-CC-
Q 008265 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-D---VFTYSTIVKVFADAKWWQMALKVKEDMLSAGV-TP- 396 (572)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p- 396 (572)
+...+-.+...+.+.|++++|...|+.+.+. .| + ...+..+..+|.+.|++++|+..|++..+... .|
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 87 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTY------GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG------CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh------CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence 4556666777788888888888888888763 23 2 56777788888888888888888888877522 11
Q ss_pred chhhHHHHHHHHHH--------cCCHHHHHHHHHHHHHcCCCCCHHHH-----------------HHHHHHHHHhCCHhH
Q 008265 397 NTITWSSLINACAN--------AGLVEQAMHLFEEMLQAGCEPNSQCC-----------------NILLQACVEACQFDR 451 (572)
Q Consensus 397 ~~~~~~~li~~~~~--------~g~~~~a~~~~~~m~~~~~~p~~~~~-----------------~~li~~~~~~g~~~~ 451 (572)
....+..+..++.. .|++++|...|+++.+.. +-+.... ..+...|.+.|++++
T Consensus 88 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 166 (261)
T 3qky_A 88 VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEA 166 (261)
T ss_dssp HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHH
Confidence 23456667777777 888888888888887753 1122222 456778999999999
Q ss_pred HHHHHHHhhhcccccccccccCCchHHHHhhhhhccccccCCCCcccCCccchhhhhcCCCCCHHHHHHHHHHHh-----
Q 008265 452 AFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC----- 526 (572)
Q Consensus 452 A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~a~~----- 526 (572)
|...|+++.+.... .......+..+..+|.
T Consensus 167 A~~~~~~~l~~~p~---------------------------------------------~~~~~~a~~~l~~~~~~~g~~ 201 (261)
T 3qky_A 167 AAVTYEAVFDAYPD---------------------------------------------TPWADDALVGAMRAYIAYAEQ 201 (261)
T ss_dssp HHHHHHHHHHHCTT---------------------------------------------STTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCC---------------------------------------------CchHHHHHHHHHHHHHHhccc
Confidence 99999998754211 0112345555555664
Q ss_pred -------hcHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHccCCccccccc
Q 008265 527 -------TDYYRVKALMNEMRTVGLSPNH----ISWTILIDACGGSGNVEGALQC 570 (572)
Q Consensus 527 -------~~~~~a~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~g~~~~a~~~ 570 (572)
++.++|...++...+. .|+. .....+-..+.+.|+++++..+
T Consensus 202 ~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~l~~~~~~~~~~~~~~~~ 254 (261)
T 3qky_A 202 SVRARQPERYRRAVELYERLLQI--FPDSPLLRTAEELYTRARQRLTELEGDASL 254 (261)
T ss_dssp SCGGGHHHHHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred chhhcccchHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 4568999999999874 4654 3555666666666666665543
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.59 E-value=3e-06 Score=79.67 Aligned_cols=96 Identities=13% Similarity=-0.014 Sum_probs=65.6
Q ss_pred hhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008265 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDAS 247 (572)
Q Consensus 168 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 247 (572)
.|++++|.+++++..+... ... +...++++.|...| ..+...|...|++++|...|.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~--~~~---------~~~~~~~~~A~~~~----------~~a~~~~~~~g~~~~A~~~~~~a 62 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK--TSF---------MKWKPDYDSAASEY----------AKAAVAFKNAKQLEQAKDAYLQE 62 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC--CCS---------SSCSCCHHHHHHHH----------HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc--ccc---------cCCCCCHHHHHHHH----------HHHHHHHHHcCCHHHHHHHHHHH
Confidence 5899999999987665321 110 11146777777654 45577888899999999998876
Q ss_pred Hhc----CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008265 248 KKH----LSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (572)
Q Consensus 248 ~~~----~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 284 (572)
.+. +-.. -...|+.+...|.+.|++++|...|++..+
T Consensus 63 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~ 104 (307)
T 2ifu_A 63 AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASV 104 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 543 1111 134777788888888888888888887653
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=1.8e-06 Score=88.98 Aligned_cols=151 Identities=8% Similarity=-0.099 Sum_probs=92.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 008265 269 CGDYMKSRAIYEDLRSQNVTL-NIYVFNSLMNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQE 345 (572)
Q Consensus 269 ~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 345 (572)
.|++++|.+.|++..+. .| +...|..+-..+ .|++++|...+++..+.... +...+..+..+|...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHH
Confidence 36778888888777654 23 344444444443 37788888888887765432 56677777778888888888888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHc---CCHHHHHHHHH
Q 008265 346 IYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA---GLVEQAMHLFE 422 (572)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~a~~~~~ 422 (572)
.|++..+. .+.+...+..+..+|.+.|++++|.+.+++..+.... +...+..+..++... |+.++|.+.++
T Consensus 79 ~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~ 152 (568)
T 2vsy_A 79 LLQQASDA-----APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVR 152 (568)
T ss_dssp HHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred HHHHHHhc-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 88877763 1335667777778888888888888888877765322 456677777777777 88888888888
Q ss_pred HHHHcC
Q 008265 423 EMLQAG 428 (572)
Q Consensus 423 ~m~~~~ 428 (572)
+..+.+
T Consensus 153 ~al~~~ 158 (568)
T 2vsy_A 153 AAVAQG 158 (568)
T ss_dssp HHHHHT
T ss_pred HHHhcC
Confidence 877654
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.57 E-value=5.9e-06 Score=73.61 Aligned_cols=183 Identities=11% Similarity=0.033 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC-HHHHHHHHHH--hcCChHHHHHHHHHHHHcCCCCCH--HHHHHH
Q 008265 257 YICRTIIDVCGICGDYMKSRAIYEDLRSQNVT-LN-IYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADM--ASYNIL 330 (572)
Q Consensus 257 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-p~-~~~~~~ll~~--~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~l 330 (572)
..+..+...+.+.|++++|...|+++.+.... |. ...+..+..+ ..|++++|...|+++.+....... ..+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 34445555667777777777777777654211 11 1122222222 225666666666665554322111 122223
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchh-hH--------
Q 008265 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI-TW-------- 401 (572)
Q Consensus 331 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~-------- 401 (572)
..++.+.|.. .+. .|..+...+...|++++|+..|+++.+. .|+.. .+
T Consensus 85 g~~~~~~~~~-----~~~----------------~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~ 141 (225)
T 2yhc_A 85 GLTNMALDDS-----ALQ----------------GFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVF 141 (225)
T ss_dssp HHHHHHHHC-----------------------------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHH
T ss_pred HHHHHhhhhh-----hhh----------------hhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHH
Confidence 3333321100 000 0001111122345666666666666554 23321 11
Q ss_pred ---------HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHhCCHhHHHHHHHHhhhccc
Q 008265 402 ---------SSLINACANAGLVEQAMHLFEEMLQAGCEPN----SQCCNILLQACVEACQFDRAFRLFRSWTLSKT 464 (572)
Q Consensus 402 ---------~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 464 (572)
..+...|.+.|++++|...|+++.+. .|+ ...+..+..++.+.|++++|.+.++.+...+.
T Consensus 142 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 142 LKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 24566788999999999999999876 343 25688889999999999999999998876543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.3e-05 Score=70.31 Aligned_cols=111 Identities=15% Similarity=0.160 Sum_probs=71.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCC-HHHHHH----------------HHHHHHccccHHHHHHHHHHHHHC
Q 008265 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYST----------------IVKVFADAKWWQMALKVKEDMLSA 392 (572)
Q Consensus 330 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~----------------li~~~~~~g~~~~a~~~~~~m~~~ 392 (572)
....+...|++++|+..|++..+. .|+ ...|.. +..+|.+.|++++|+..|++..+.
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIAL------NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH------CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh------CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 334455667777777777766652 232 334444 667777777777777777777765
Q ss_pred CCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC
Q 008265 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448 (572)
Q Consensus 393 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 448 (572)
... +...|..+..++...|++++|...|++..+.. +-+...+..+..+|...|+
T Consensus 84 ~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 84 APN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp CTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence 322 55667777777777777777777777777653 3356666666666655443
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.55 E-value=3.3e-05 Score=71.54 Aligned_cols=231 Identities=11% Similarity=0.042 Sum_probs=124.7
Q ss_pred hhHHHHHHHHHHhhhhh-HHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCC--ChHHHHHhhhcC----CCchhHHHH
Q 008265 154 GFKLLKNECQRLLDSGE-VEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKP--DVNLAIRYACIV----PRADILFCN 226 (572)
Q Consensus 154 ~~~~l~~~~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~----~~~~~~~~~ 226 (572)
-|.-++..+....+.|. .++|+.+++.++.. .|.....|+.--..+...| ++++++.+++.+ |++..+|+.
T Consensus 31 ~y~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~ 108 (306)
T 3dra_A 31 DYKQIMGLLLALMKAEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNY 108 (306)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHH
Confidence 34444444444444444 46888888888764 5667677777666666666 777777666553 444455554
Q ss_pred HHHHH----Hhc---CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhCCCCCCHHHHHHH
Q 008265 227 FVREF----GKK---RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM--KSRAIYEDLRSQNVTLNIYVFNSL 297 (572)
Q Consensus 227 li~~~----~~~---g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~--~a~~~~~~m~~~g~~p~~~~~~~l 297 (572)
-...+ ... +++++++++++.+.+... -+-.+|+.-.-.+.+.|.++ ++++.++++.+... -|...|+-.
T Consensus 109 R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~p-kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R 186 (306)
T 3dra_A 109 RQLIIGQIMELNNNDFDPYREFDILEAMLSSDP-KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHR 186 (306)
T ss_dssp HHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred HHHHHHHHHHhccccCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHH
Confidence 32222 333 566777777777666532 25566666666666666666 66666666665532 233333322
Q ss_pred HHH--hcCC------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008265 298 MNV--NAHD------LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVL-AQEIYGEVKHLEAKGVLKLDVFTYST 368 (572)
Q Consensus 298 l~~--~~~~------~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (572)
-.. ..+. ++++++.++++....+. |...|+-+-..+.+.|+..+ +..+..++...+. . -..+...+..
T Consensus 187 ~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~-~-~~~s~~al~~ 263 (306)
T 3dra_A 187 FFLLFSKKHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEK-D-QVTSSFALET 263 (306)
T ss_dssp HHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGG-T-EESCHHHHHH
T ss_pred HHHHHhccccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccC-C-CCCCHHHHHH
Confidence 221 1122 55566666655554433 55566555555555555332 3334443332110 0 1234455555
Q ss_pred HHHHHHccccHHHHHHHHHHHHH
Q 008265 369 IVKVFADAKWWQMALKVKEDMLS 391 (572)
Q Consensus 369 li~~~~~~g~~~~a~~~~~~m~~ 391 (572)
+...|.+.|+.++|.++++.+.+
T Consensus 264 la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 264 LAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHccCCHHHHHHHHHHHHh
Confidence 55566555666666666666554
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.9e-06 Score=90.53 Aligned_cols=152 Identities=10% Similarity=-0.075 Sum_probs=129.2
Q ss_pred hcCChHHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008265 301 NAHDLKFTLEVYKNMQ--------KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372 (572)
Q Consensus 301 ~~~~~~~a~~~~~~m~--------~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 372 (572)
..+++++|++.+++.. +.. +.+...+..+..++.+.|++++|...|+++.+.. +.+...|..+..+
T Consensus 403 ~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-----p~~~~a~~~lg~~ 476 (681)
T 2pzi_A 403 VLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-----GWRWRLVWYRAVA 476 (681)
T ss_dssp TTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----CCCHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-----cchHHHHHHHHHH
Confidence 4488999999999988 432 2356778888899999999999999999998752 4467799999999
Q ss_pred HHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHH
Q 008265 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452 (572)
Q Consensus 373 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 452 (572)
|...|++++|++.|++..+.... +...|..+..+|.+.|++++ .+.|++..+.. +-+...|..+..++.+.|++++|
T Consensus 477 ~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A 553 (681)
T 2pzi_A 477 ELLTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGA 553 (681)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999887322 56778899999999999999 99999998864 44678899999999999999999
Q ss_pred HHHHHHhhh
Q 008265 453 FRLFRSWTL 461 (572)
Q Consensus 453 ~~~~~~m~~ 461 (572)
.+.|++..+
T Consensus 554 ~~~~~~al~ 562 (681)
T 2pzi_A 554 VRTLDEVPP 562 (681)
T ss_dssp HHHHHTSCT
T ss_pred HHHHHhhcc
Confidence 999988764
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.54 E-value=5.2e-06 Score=72.92 Aligned_cols=178 Identities=10% Similarity=-0.075 Sum_probs=113.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 008265 258 ICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337 (572)
Q Consensus 258 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 337 (572)
.+-.....+.+.|++++|...|++..+. .|+........ ....... ........+..+|.+.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~-~~~~~~~---------------~~~~~~~~lg~~~~~~ 67 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWT-NVDKNSE---------------ISSKLATELALAYKKN 67 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHH-HSCTTSH---------------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHh-hhcchhh---------------hhHHHHHHHHHHHHHC
Confidence 3444455677889999999999988775 34322111110 1111110 1122234577788899
Q ss_pred CChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCC--HH
Q 008265 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL--VE 415 (572)
Q Consensus 338 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~ 415 (572)
|++++|+..|++..+. -+-+...+..+...|...|++++|+..|++..+.... +...|..+..+|...|+ .+
T Consensus 68 g~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~ 141 (208)
T 3urz_A 68 RNYDKAYLFYKELLQK-----APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKK 141 (208)
T ss_dssp TCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999998874 1346778888889999999999999999998876332 55677777777765543 33
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 416 QAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 416 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
.+...+..... ..|....+.....++...|++++|...|++..+
T Consensus 142 ~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 142 KLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44555555431 122223344445566778899999999988765
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.2e-06 Score=74.78 Aligned_cols=156 Identities=8% Similarity=-0.037 Sum_probs=78.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-hc
Q 008265 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV-NA 302 (572)
Q Consensus 224 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~ 302 (572)
+..+...+.+.|++++|...|+...+.. +.+...+..+...+.+.|++++|...|+...... |+...+...... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 3345556666677777777776655432 1245566677777777777777777777665442 232222111100 00
Q ss_pred --CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHccc
Q 008265 303 --HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD---VFTYSTIVKVFADAK 377 (572)
Q Consensus 303 --~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g 377 (572)
+....+...+++..+.... +...+..+...+...|++++|...|+++.+ ..|+ ...+..+...+...|
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~------~~p~~~~~~a~~~l~~~~~~~g 158 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILK------VNLGAQDGEVKKTFMDILSALG 158 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------TCTTTTTTHHHHHHHHHHHHHC
T ss_pred hhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHH------hCcccChHHHHHHHHHHHHHhC
Confidence 1112234444444443221 344455555555555555555555555544 1222 234455555555555
Q ss_pred cHHHHHHHHHHH
Q 008265 378 WWQMALKVKEDM 389 (572)
Q Consensus 378 ~~~~a~~~~~~m 389 (572)
+.++|...|++.
T Consensus 159 ~~~~A~~~y~~a 170 (176)
T 2r5s_A 159 QGNAIASKYRRQ 170 (176)
T ss_dssp SSCHHHHHHHHH
T ss_pred CCCcHHHHHHHH
Confidence 555555555443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=5.1e-06 Score=77.13 Aligned_cols=164 Identities=9% Similarity=-0.030 Sum_probs=83.8
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008265 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334 (572)
Q Consensus 255 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 334 (572)
+...+..+...+.+.|++++|.+.|++..+. .|+ +...+..+...+
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~--------------------------------~~~a~~~la~~~ 161 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQ--------------------------------NGEIGLLLAETL 161 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTS--------------------------------CHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCc--------------------------------chhHHHHHHHHH
Confidence 3344455555556666666666666665543 121 344455555555
Q ss_pred HHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCC
Q 008265 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST-IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413 (572)
Q Consensus 335 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 413 (572)
.+.|++++|...++.+.. ..|+...... ....+.+.++.++|.+.+++..+... .+...+..+...+...|+
T Consensus 162 ~~~g~~~~A~~~l~~~~~------~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~ 234 (287)
T 3qou_A 162 IALNRSEDAEAVLXTIPL------QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGR 234 (287)
T ss_dssp HHTTCHHHHHHHHTTSCG------GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHCCCHHHHHHHHHhCch------hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHccc
Confidence 566666666666555543 2233332211 11224444555555555555554421 134455555566666666
Q ss_pred HHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCHhHHHHHHHHh
Q 008265 414 VEQAMHLFEEMLQAGCE-PNSQCCNILLQACVEACQFDRAFRLFRSW 459 (572)
Q Consensus 414 ~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (572)
+++|...|.++.+..-. .+...+..+...+...|+.++|...|++.
T Consensus 235 ~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 235 NEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp HHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 66666666666554211 11445566666666666666666655543
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=3.3e-06 Score=78.39 Aligned_cols=163 Identities=12% Similarity=0.001 Sum_probs=113.8
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008265 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL 297 (572)
Q Consensus 218 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 297 (572)
|.+...+..+...+.+.|++++|...|+...+... -+...+..+...+.+.|++++|...+++.... .|+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 34445667788888999999999999999887643 25678888999999999999999999988765 3554332222
Q ss_pred HHH---hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCC---HHHHHHHHH
Q 008265 298 MNV---NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD---VFTYSTIVK 371 (572)
Q Consensus 298 l~~---~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~~~~~li~ 371 (572)
... ..++.+.|...+++..+.... +...+..+...+...|++++|...|.++.+. .|+ ...+..+..
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~------~p~~~~~~a~~~l~~ 263 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRX------DLTAADGQTRXTFQE 263 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTGGGGHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc------ccccccchHHHHHHH
Confidence 221 124566667777776665432 5666777777777777777777777777763 232 456777777
Q ss_pred HHHccccHHHHHHHHHHHH
Q 008265 372 VFADAKWWQMALKVKEDML 390 (572)
Q Consensus 372 ~~~~~g~~~~a~~~~~~m~ 390 (572)
.|...|+.++|...+++..
T Consensus 264 ~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 264 ILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHCTTCHHHHHHHHHH
T ss_pred HHHHcCCCCcHHHHHHHHH
Confidence 7777777777776666543
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.50 E-value=2.3e-06 Score=80.44 Aligned_cols=133 Identities=7% Similarity=-0.061 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccccHHHHHHHHHHHHHCC----CCC-ch
Q 008265 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD--VFTYSTIVKVFADAKWWQMALKVKEDMLSAG----VTP-NT 398 (572)
Q Consensus 326 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~p-~~ 398 (572)
+|+.+...|.+.|++++|...|++..++..... .+. ..+++.+...|.. |++++|++.|++..+.. -.. ..
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~ 155 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAA 155 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHH
Confidence 455566666666777777776666655421110 111 2355566666666 77777777666654321 000 12
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHHhCCHhHHHHHHHHhh
Q 008265 399 ITWSSLINACANAGLVEQAMHLFEEMLQA----GCEPN-SQCCNILLQACVEACQFDRAFRLFRSWT 460 (572)
Q Consensus 399 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (572)
.++..+...|.+.|++++|...|++..+. +..+. ...+..+..++...|++++|...|++..
T Consensus 156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 45666666677777777777777766542 11111 1244555555666677777777776655
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.49 E-value=0.00012 Score=67.81 Aligned_cols=226 Identities=10% Similarity=0.016 Sum_probs=167.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHH--HHHH---
Q 008265 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG--DYMKSRAIYEDLRSQNVTLNIYVFN--SLMN--- 299 (572)
Q Consensus 227 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~~~~--~ll~--- 299 (572)
+.....+....++|+++++.+....+. +...|+.--..+...| ++++++++++.+.....+- ...|+ ..+-
T Consensus 39 ~~a~~~~~e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~-y~aW~~R~~iL~~~ 116 (306)
T 3dra_A 39 LLALMKAEEYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKN-YQIWNYRQLIIGQI 116 (306)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTC-CHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCccc-HHHHHHHHHHHHHH
Confidence 333444444557899999998886432 4567787777778888 8999999999988764222 22222 2211
Q ss_pred -Hhc---CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChH--HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008265 300 -VNA---HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV--LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVF 373 (572)
Q Consensus 300 -~~~---~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 373 (572)
... +++++++.+++.+.+...+ +..+|+.-.-.+.+.|+++ ++.+.++.+.+. -+-|...|+.....+
T Consensus 117 ~~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~-----d~~N~sAW~~R~~ll 190 (306)
T 3dra_A 117 MELNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT-----DLKNNSAWSHRFFLL 190 (306)
T ss_dssp HHHTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-----CTTCHHHHHHHHHHH
T ss_pred HHhccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh-----CCCCHHHHHHHHHHH
Confidence 122 6789999999999887655 7888888878888889888 999999999874 245777888877777
Q ss_pred Hcccc------HHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHH-HHHHHHHHHHcC--CCCCHHHHHHHHHHHH
Q 008265 374 ADAKW------WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ-AMHLFEEMLQAG--CEPNSQCCNILLQACV 444 (572)
Q Consensus 374 ~~~g~------~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~~--~~p~~~~~~~li~~~~ 444 (572)
.+.+. ++++++.++++...... |...|+.+-..+.+.|+..+ +..+..++.+.+ -..+...+..+.+++.
T Consensus 191 ~~l~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~ 269 (306)
T 3dra_A 191 FSKKHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYT 269 (306)
T ss_dssp HSSGGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHH
T ss_pred HhccccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHH
Confidence 77776 89999999998887554 77889988888888887444 455666654432 1346788899999999
Q ss_pred HhCCHhHHHHHHHHhhh
Q 008265 445 EACQFDRAFRLFRSWTL 461 (572)
Q Consensus 445 ~~g~~~~A~~~~~~m~~ 461 (572)
+.|+.++|.++++.+.+
T Consensus 270 ~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 270 QQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHh
Confidence 99999999999999875
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.48 E-value=3.2e-05 Score=68.02 Aligned_cols=173 Identities=12% Similarity=0.009 Sum_probs=113.9
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc-C----ChHHHHHHHH
Q 008265 239 SALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA-H----DLKFTLEVYK 313 (572)
Q Consensus 239 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-~----~~~~a~~~~~ 313 (572)
+|.+.|....+.| +...+..+-..|...+++++|...|++..+.| +...+..+-..+. + +.++|...|+
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIRNPQQADYPQARQLAE 77 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTSSTTSCCHHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 4556666666653 56666777777777778888888887777765 3333333333322 3 6777777777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHc----cccHHHH
Q 008265 314 NMQKLGVMADMASYNILLKACCL----AGNTVLAQEIYGEVKHLEAKGVLKLD---VFTYSTIVKVFAD----AKWWQMA 382 (572)
Q Consensus 314 ~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~---~~~~~~li~~~~~----~g~~~~a 382 (572)
+..+.| +...+..+...|.. .+++++|...|++..+ ..++ ...+..|...|.. .+++++|
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~------~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A 148 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR------DSESDAAVDAQMLLGLIYASGVHGPEDDVKA 148 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS------STTSHHHHHHHHHHHHHHHHTSSSSCCHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH------cCCCcchHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 776654 55666666666665 6778888888887765 2232 5677777777776 6778888
Q ss_pred HHHHHHHHHCCCCCchhhHHHHHHHHHHc-C-----CHHHHHHHHHHHHHcC
Q 008265 383 LKVKEDMLSAGVTPNTITWSSLINACANA-G-----LVEQAMHLFEEMLQAG 428 (572)
Q Consensus 383 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g-----~~~~a~~~~~~m~~~~ 428 (572)
+..|++..+. ..+...+..|-..|... | +.++|...|+...+.|
T Consensus 149 ~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 149 SEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 8888887775 22344566666666543 2 7788888888877766
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.6e-06 Score=91.05 Aligned_cols=181 Identities=10% Similarity=-0.057 Sum_probs=131.7
Q ss_pred HhcCCHHHHHHHHHHHH--------hCCCCC-CHHHHHHHHHH--hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008265 267 GICGDYMKSRAIYEDLR--------SQNVTL-NIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335 (572)
Q Consensus 267 ~~~g~~~~a~~~~~~m~--------~~g~~p-~~~~~~~ll~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 335 (572)
...|++++|++.|++.. +. .| +...+..+-.+ ..|++++|+..|++..+.... +...+..+..+|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD--FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C--CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc--cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHH
Confidence 67788899999988887 32 23 23344443333 348899999999888876433 6778888888999
Q ss_pred HcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHH
Q 008265 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415 (572)
Q Consensus 336 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 415 (572)
..|++++|+..|++..+.. +-+...|..+..+|.+.|++++ ++.|++..+.... +...|..+..++.+.|+++
T Consensus 479 ~~g~~~~A~~~~~~al~l~-----P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~ 551 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTF-----PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRV 551 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHS-----TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HcCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHH
Confidence 9999999999999988741 3356688888889999999999 9999998876432 5677888899999999999
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHhCC--------HhHHHHHHHHh
Q 008265 416 QAMHLFEEMLQAGCEPN-SQCCNILLQACVEACQ--------FDRAFRLFRSW 459 (572)
Q Consensus 416 ~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~--------~~~A~~~~~~m 459 (572)
+|.+.|++..+. .|+ ...+..+..++...++ +++|.+.+..+
T Consensus 552 ~A~~~~~~al~l--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 552 GAVRTLDEVPPT--SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HHHHHHHTSCTT--STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred HHHHHHHhhccc--CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 999999988765 454 4567777777666444 45555555443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.44 E-value=1.4e-05 Score=66.83 Aligned_cols=131 Identities=11% Similarity=0.044 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHH
Q 008265 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (572)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 403 (572)
...+..+...+...|++++|...|...... .+.+...+..+...+...|++++|++.+++..+... .+...|..
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~ 86 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIEL-----NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYR 86 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHH
Confidence 345677788889999999999999998874 244678899999999999999999999999887642 25678888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCN--ILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 404 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
+..++...|++++|...+++..+.. +.+...+. .....+.+.|++++|.+.+.+...
T Consensus 87 ~a~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 87 RAASNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999999999998764 33455553 344447788999999999987654
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=8.3e-06 Score=83.98 Aligned_cols=151 Identities=12% Similarity=0.002 Sum_probs=96.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh--cCChHHHHHHH
Q 008265 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLEVY 312 (572)
Q Consensus 235 g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~~~~a~~~~ 312 (572)
|++++|.+.|++..+... -+...|..+...|.+.|++++|.+.|++..+.. +-+...+..+-.++ .|++++|...+
T Consensus 3 g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 566666666666554321 235566666666777777777777777766542 11234444443332 36677777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc---ccHHHHHHHHHHH
Q 008265 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA---KWWQMALKVKEDM 389 (572)
Q Consensus 313 ~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m 389 (572)
++..+.... +...+..+..+|.+.|++++|.+.|++..+. .+.+...+..+...+... |+.++|.+.+++.
T Consensus 81 ~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQL-----LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 776665432 5778899999999999999999999999874 234577889999999999 9999999999999
Q ss_pred HHCC
Q 008265 390 LSAG 393 (572)
Q Consensus 390 ~~~g 393 (572)
.+.+
T Consensus 155 l~~~ 158 (568)
T 2vsy_A 155 VAQG 158 (568)
T ss_dssp HHHT
T ss_pred HhcC
Confidence 8874
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.42 E-value=6e-06 Score=70.31 Aligned_cols=154 Identities=9% Similarity=-0.049 Sum_probs=90.3
Q ss_pred HHHHHHHHhcCCChHHHHHhhhcC----CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHH-HHh
Q 008265 194 EFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDV-CGI 268 (572)
Q Consensus 194 ~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~~~ 268 (572)
+..+...+...|++++|+..++.. |.+...+..+...+.+.|++++|...|+...+... +...+..+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHh
Confidence 444555566666666666666554 33345666677777777777777777776655432 33322222111 112
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHH--hcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChHHHH
Q 008265 269 CGDYMKSRAIYEDLRSQNVTLN-IYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMA-DMASYNILLKACCLAGNTVLAQ 344 (572)
Q Consensus 269 ~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~--~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~ 344 (572)
.+...+|...|++..+. .|+ ...+..+-.+ ..|++++|...|+++.+....+ +...+..+...+...|+.++|.
T Consensus 87 ~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 87 QAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 22333456667666654 233 3444443333 3377777777777777654432 3557777888888888888888
Q ss_pred HHHHHHH
Q 008265 345 EIYGEVK 351 (572)
Q Consensus 345 ~~~~~~~ 351 (572)
..|++..
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887665
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.41 E-value=1.8e-05 Score=71.58 Aligned_cols=200 Identities=9% Similarity=-0.082 Sum_probs=130.9
Q ss_pred hcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhh-------hHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhh-
Q 008265 83 KDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASG-------IVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSG- 154 (572)
Q Consensus 83 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~-------~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~- 154 (572)
..++...|.+.|.+..+..+.. .+.+... ...+.+.++..+++..+..-.. +.|+.......
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~--------~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~ 87 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESA--------CDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAI 87 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTC--------HHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEEC
T ss_pred cCCCHHHHHHHHHHHHHhChhh--------hHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhcc
Confidence 5799999999999999885531 2233322 2334444555555555554433 34443211111
Q ss_pred --------------hHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCc
Q 008265 155 --------------FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRA 220 (572)
Q Consensus 155 --------------~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 220 (572)
-.+.+.....+...|++++|.++|+.+...+ |.+. ....+...+.+.+++++|+..|+.....
T Consensus 88 ~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~ 164 (282)
T 4f3v_A 88 GGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKW 164 (282)
T ss_dssp CTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGC
T ss_pred CCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchH-HHHHHHHHHHHcCCHHHHHHHHHHhhcc
Confidence 1122222334556899999999998877643 4444 5556667888999999999988765332
Q ss_pred ------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 008265 221 ------DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPN--MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292 (572)
Q Consensus 221 ------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 292 (572)
...+..+..++.+.|++++|++.|++.......|. .........++.+.|+.++|..+|+++... .|+..
T Consensus 165 ~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~ 242 (282)
T 4f3v_A 165 PDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPK 242 (282)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHH
T ss_pred CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHH
Confidence 24677788899999999999999998875332243 345566677788889999999999999876 45544
Q ss_pred HHHHH
Q 008265 293 VFNSL 297 (572)
Q Consensus 293 ~~~~l 297 (572)
.+..|
T Consensus 243 ~~~aL 247 (282)
T 4f3v_A 243 VAAAL 247 (282)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.41 E-value=2.2e-05 Score=61.81 Aligned_cols=116 Identities=17% Similarity=0.165 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHH
Q 008265 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (572)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 403 (572)
...+..+...+...|++++|...|+++... .+.+...+..+...+.+.|++++|...++++.+... .+..++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 82 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYN 82 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHH
Confidence 456777888888899999999999888763 234567888888888899999999999988877632 35677888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 008265 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446 (572)
Q Consensus 404 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 446 (572)
+...|...|++++|...++++.+.. +.+...+..+...+.+.
T Consensus 83 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 83 LGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhc
Confidence 8888899999999999999887763 33455555555555443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=1.9e-06 Score=71.13 Aligned_cols=135 Identities=7% Similarity=-0.088 Sum_probs=84.3
Q ss_pred ChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHH
Q 008265 304 DLKFTLEVYKNMQKLGVMA-DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382 (572)
Q Consensus 304 ~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 382 (572)
++++|+..+...... .| +...+..+...|.+.|++++|++.|++..+. -+-+..+|..+..+|.+.|++++|
T Consensus 12 ~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~-----~p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 12 DVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV-----QERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp HHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCchHHH
Confidence 455555555554332 12 2233455667777888888888888877764 133566777777788888888888
Q ss_pred HHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHH-HHHHHHcCCCCCHHHHHHHHHHHHHhC
Q 008265 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHL-FEEMLQAGCEPNSQCCNILLQACVEAC 447 (572)
Q Consensus 383 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~-~~~m~~~~~~p~~~~~~~li~~~~~~g 447 (572)
+..|++..+.... +...|..+...|.+.|+.++|.+. +++..+.. +-+..+|......+...|
T Consensus 85 ~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 85 VECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 8888877765322 456677777777777777665544 46666542 234555555555554444
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.36 E-value=1.7e-05 Score=69.73 Aligned_cols=130 Identities=10% Similarity=-0.100 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHH
Q 008265 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405 (572)
Q Consensus 326 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 405 (572)
.+..+...+...|++++|...|++.. .|+...|..+...|.+.|++++|++.+++..+... .+...|..+.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg 78 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRG 78 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHH
Confidence 34556677888999999999998663 56888999999999999999999999999887642 3567888899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCC--------------CC-CHHHHHHHHHHHHHhCCHhHHHHHHHHhhhccc
Q 008265 406 NACANAGLVEQAMHLFEEMLQAGC--------------EP-NSQCCNILLQACVEACQFDRAFRLFRSWTLSKT 464 (572)
Q Consensus 406 ~~~~~~g~~~~a~~~~~~m~~~~~--------------~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 464 (572)
.+|...|++++|.+.|++..+..- .| ....+..+..++.+.|++++|.+.|++..+...
T Consensus 79 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 79 MLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 999999999999999999987531 11 236788899999999999999999999876543
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.36 E-value=0.0012 Score=65.94 Aligned_cols=353 Identities=7% Similarity=-0.097 Sum_probs=204.1
Q ss_pred hhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhC-ChhHHHHHHHHhhhc-CCCCcc
Q 008265 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREG-RIDCVVGVLKKLNEL-GVAPLE 148 (572)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~m~~~-~~~p~~ 148 (572)
..+|...+..+-. |+++.+..+|+..+..-+..+-|.. |..... +.+ ..+....+|+..... |..|+.
T Consensus 15 R~vyer~l~~~P~-~~~e~~~~iferal~~~ps~~LW~~------Y~~f~~---~~~~~~~~i~~~fe~al~~vg~d~~s 84 (493)
T 2uy1_A 15 SAIMEHARRLYMS-KDYRSLESLFGRCLKKSYNLDLWML------YIEYVR---KVSQKKFKLYEVYEFTLGQFENYWDS 84 (493)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHSTTCCCHHHHHH------HHHHHH---HHC----CTHHHHHHHHHHSTTCTTC
T ss_pred HHHHHHHHHHCCC-CCHHHHHHHHHHHhccCCCHHHHHH------HHHHHH---HhCchHHHHHHHHHHHHHHcCCCccc
Confidence 5667766666644 8899999999999987554443332 222222 222 235567777776664 444432
Q ss_pred hhhhhhhHHHHHHHHHH-hhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhc---CCCh--------------HHH
Q 008265 149 LFDGSGFKLLKNECQRL-LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVN---KPDV--------------NLA 210 (572)
Q Consensus 149 ~~~~~~~~~l~~~~~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~---~g~~--------------~~a 210 (572)
. .+...++.-+... ...++.+.+..+|+..+.. ++.. +..+...|.. ..+. ..|
T Consensus 85 ~---~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~~---~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~a 156 (493)
T 2uy1_A 85 Y---GLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT--PMGS---LSELWKDFENFELELNKITGKKIVGDTLPIFQSS 156 (493)
T ss_dssp H---HHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS--CCTT---HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC--hhhh---HHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHH
Confidence 1 2333332211000 1357899999999999873 3222 2222222221 1111 122
Q ss_pred HHhhhcCC----C-chhHHHHHHHHHHhcC--C-----HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 008265 211 IRYACIVP----R-ADILFCNFVREFGKKR--D-----LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI 278 (572)
Q Consensus 211 ~~~~~~~~----~-~~~~~~~li~~~~~~g--~-----~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 278 (572)
..+++... . +...|...+..-...+ - .+.+..+|++..... +.+...|-..+..+.+.|+.++|..+
T Consensus 157 r~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i 235 (493)
T 2uy1_A 157 FQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKV 235 (493)
T ss_dssp HHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 22221110 0 1124444444432211 1 345677888887753 34577888888888999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHcC---------CCC---CHHHHHHHHHHHHHcCChHHHHHH
Q 008265 279 YEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLG---------VMA---DMASYNILLKACCLAGNTVLAQEI 346 (572)
Q Consensus 279 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~---------~~~---~~~~~~~ll~~~~~~g~~~~a~~~ 346 (572)
|++.... +.+...|...... ...++. ++.+.+.- ..+ ....|...+....+.++.+.|..+
T Consensus 236 ~erAi~~--P~~~~l~~~y~~~--~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i 308 (493)
T 2uy1_A 236 VERGIEM--SDGMFLSLYYGLV--MDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKL 308 (493)
T ss_dssp HHHHHHH--CCSSHHHHHHHHH--TTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHhC--CCcHHHHHHHHhh--cchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999887 3333333221111 112222 22222110 001 124566666767677889999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccc-cHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008265 347 YGEVKHLEAKGVLKLDVFTYSTIVKVFADAK-WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425 (572)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 425 (572)
|+.. . .. ..+...|......-...+ +.+.|..+|+...+.... +...|...++...+.|+.+.|..+|+.+.
T Consensus 309 ~~~A-~---~~--~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er~~ 381 (493)
T 2uy1_A 309 FIEL-G---NE--GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD-STLLKEEFFLFLLRIGDEENARALFKRLE 381 (493)
T ss_dssp HHHH-T---TS--CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHSC
T ss_pred HHHh-h---CC--CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9988 3 11 123444433222222233 699999999998875321 34456667777788899999999999973
Q ss_pred HcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 426 QAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 426 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
.....|...+.-=...|+.+.+..++++...
T Consensus 382 -----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 382 -----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp -----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2467788888777788999999999988764
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.36 E-value=2.2e-05 Score=62.39 Aligned_cols=120 Identities=11% Similarity=0.053 Sum_probs=96.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHH
Q 008265 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (572)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 402 (572)
+...+..+...+...|++++|...|++.... .+.+...+..+...+...|++++|.+.+.+..+... .+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ 84 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL-----NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYG 84 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHH
Confidence 3456777788888999999999999998864 234677888888999999999999999999887632 2467788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCH
Q 008265 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQF 449 (572)
Q Consensus 403 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 449 (572)
.+...+...|++++|...+++..+.. +.+...+..+..++.+.|++
T Consensus 85 ~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 85 RMGLALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 88889999999999999999988764 34667777888888777764
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.35 E-value=4.4e-05 Score=67.11 Aligned_cols=175 Identities=10% Similarity=-0.023 Sum_probs=136.2
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHH--HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----ChHHHHHHH
Q 008265 274 KSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAG----NTVLAQEIY 347 (572)
Q Consensus 274 ~a~~~~~~m~~~g~~p~~~~~~~ll~--~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g----~~~~a~~~~ 347 (572)
+|++.|++..+.| +...+..+-. ...+++++|...|++..+.| +...+..+-..|.. + ++++|...|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4677888887775 3444443333 34589999999999998865 66777788888887 6 899999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHc----cccHHHHHHHHHHHHHCCCC-CchhhHHHHHHHHHH----cCCHHHHH
Q 008265 348 GEVKHLEAKGVLKLDVFTYSTIVKVFAD----AKWWQMALKVKEDMLSAGVT-PNTITWSSLINACAN----AGLVEQAM 418 (572)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~----~g~~~~a~ 418 (572)
++..+ .-+...+..|...|.. .+++++|++.|++..+.|.. .+...+..|-..|.. .++.++|.
T Consensus 77 ~~A~~-------~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~ 149 (212)
T 3rjv_A 77 EKAVE-------AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKAS 149 (212)
T ss_dssp HHHHH-------TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHH
T ss_pred HHHHH-------CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 99975 2367788888888887 88999999999999987542 126778888888988 88999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHh-C-----CHhHHHHHHHHhhhccc
Q 008265 419 HLFEEMLQAGCEPNSQCCNILLQACVEA-C-----QFDRAFRLFRSWTLSKT 464 (572)
Q Consensus 419 ~~~~~m~~~~~~p~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~~~ 464 (572)
..|++..+. ..+...+..|-..|.+. | +.++|...|++..+.|.
T Consensus 150 ~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 150 EYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999999886 23445677777777664 3 89999999999877663
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=3.1e-06 Score=69.88 Aligned_cols=122 Identities=7% Similarity=-0.069 Sum_probs=97.8
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHH
Q 008265 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410 (572)
Q Consensus 332 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 410 (572)
..+...|++++|+..+..... ..|+ ...+..+...|.+.|++++|++.|++..+.... +...|..+..+|.+
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~------~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 77 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTP------SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYEL 77 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSC------SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHHhcc------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 344566788999988888764 2333 346677889999999999999999999887433 67889999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHH-HHHhhh
Q 008265 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL-FRSWTL 461 (572)
Q Consensus 411 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~ 461 (572)
.|++++|...|++..+.. +-+...+..+...|.+.|++++|.+. +++..+
T Consensus 78 ~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 78 EENTDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999874 34678899999999999999876665 566654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.31 E-value=3.4e-05 Score=61.33 Aligned_cols=108 Identities=13% Similarity=0.035 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHH
Q 008265 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404 (572)
Q Consensus 325 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 404 (572)
..+......|.+.|++++|+..|++..+. -+.+...|..+..+|.+.|++++|++.+++..+.... +...|..+
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l 87 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKR-----DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRK 87 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHH
Confidence 45667778888899999999999888774 2446778888888888999999999999888876432 56778888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 008265 405 INACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439 (572)
Q Consensus 405 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 439 (572)
..+|...|++++|.+.|++..+.. +-+...+..+
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l 121 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQVD-PSNEEAREGV 121 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHC-cCCHHHHHHH
Confidence 888889999999999998888763 2234444333
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.30 E-value=0.00012 Score=68.00 Aligned_cols=99 Identities=10% Similarity=-0.041 Sum_probs=54.1
Q ss_pred HHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcc----
Q 008265 115 MVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKE---- 190 (572)
Q Consensus 115 ~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---- 190 (572)
.+...+..+...|++++|++.+.+..+....... ..............+...|++++|+..+++..+......+
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPE--FQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHH--HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChh--HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 3445566788999999999999887775322111 1111111111222334567999999999887754322211
Q ss_pred cchHHHHHHHHhcCCChHHHHHhhh
Q 008265 191 LDEEFRIVQLCVNKPDVNLAIRYAC 215 (572)
Q Consensus 191 ~~~~~~ll~~~~~~g~~~~a~~~~~ 215 (572)
...++.+...|...|++++|+.+++
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~ 179 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFE 179 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1234444444444555554444443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.29 E-value=2.3e-05 Score=62.70 Aligned_cols=119 Identities=14% Similarity=0.091 Sum_probs=90.8
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhH
Q 008265 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401 (572)
Q Consensus 322 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 401 (572)
.+...+..+...+...|++++|...|++..+. .+.+...+..+...|...|++++|++.+++..+... .+...+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~ 87 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKR-----NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGY 87 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT-----CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHH
Confidence 35567778888888999999999999988763 134677888888888899999999999998887632 256778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Q 008265 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447 (572)
Q Consensus 402 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 447 (572)
..+..++.+.|++++|.+.|++..+.. +-+...+..+..++.+.|
T Consensus 88 ~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 88 TRKAAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 888888999999999999999887753 223455666666665554
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.29 E-value=0.00014 Score=67.57 Aligned_cols=166 Identities=7% Similarity=-0.072 Sum_probs=95.0
Q ss_pred HhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCccc----
Q 008265 116 VASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKEL---- 191 (572)
Q Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---- 191 (572)
+...+..+...|++++|..++++..+.. +...........+......+...|++++|+..+++..+......+.
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~ 155 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKE--EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC--CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccc--cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHH
Confidence 3445667889999999999999987752 2111111111111112223345679999999999988754333332
Q ss_pred chHHHHHHHHhcCCChHHHHHhhhcCC-------Cch----hHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCc-
Q 008265 192 DEEFRIVQLCVNKPDVNLAIRYACIVP-------RAD----ILFCNFVREFGKKRDLVSALRAYDASKKH----LSSPN- 255 (572)
Q Consensus 192 ~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~~- 255 (572)
..++.+...|...|++++|+.+++... .+. .++..+...|.+.|++++|...+++..+. +..+.
T Consensus 156 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~ 235 (293)
T 3u3w_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 135666666666677666666655432 211 35556666666666666666666654331 11111
Q ss_pred HHHHHHHHHHHHhcCC-HHHHHHHHHHHH
Q 008265 256 MYICRTIIDVCGICGD-YMKSRAIYEDLR 283 (572)
Q Consensus 256 ~~~~~~ll~~~~~~g~-~~~a~~~~~~m~ 283 (572)
..+|..+..+|.+.|+ +++|.+.|++..
T Consensus 236 ~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 4456666666666663 466666665543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.28 E-value=1.7e-05 Score=68.98 Aligned_cols=158 Identities=10% Similarity=-0.020 Sum_probs=104.8
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHccccHHH
Q 008265 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLK-LDVFTYSTIVKVFADAKWWQM 381 (572)
Q Consensus 303 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~ 381 (572)
|++++|.+.++.+.. ........+..+...+...|++++|...+++........... ....++..+...|...|++++
T Consensus 6 g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 84 (203)
T 3gw4_A 6 HDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDA 84 (203)
T ss_dssp -CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 556666664433332 112245667777788888888888888888877643322111 223467777788888899988
Q ss_pred HHHHHHHHHHC----CCCC--chhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCC--HHHHHHHHHHHHHhCCHh
Q 008265 382 ALKVKEDMLSA----GVTP--NTITWSSLINACANAGLVEQAMHLFEEMLQAG---CEPN--SQCCNILLQACVEACQFD 450 (572)
Q Consensus 382 a~~~~~~m~~~----g~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~p~--~~~~~~li~~~~~~g~~~ 450 (572)
|.+.+++..+. +-.+ ....+..+...+...|++++|...+++..+.. -.+. ..++..+...+...|+++
T Consensus 85 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 164 (203)
T 3gw4_A 85 ARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLL 164 (203)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHH
Confidence 88888876543 2111 23457777888888899999998888876421 0111 234577778888999999
Q ss_pred HHHHHHHHhhh
Q 008265 451 RAFRLFRSWTL 461 (572)
Q Consensus 451 ~A~~~~~~m~~ 461 (572)
+|.+.+++..+
T Consensus 165 ~A~~~~~~al~ 175 (203)
T 3gw4_A 165 EAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998887764
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.28 E-value=2.7e-05 Score=63.99 Aligned_cols=103 Identities=11% Similarity=-0.014 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHH
Q 008265 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (572)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 403 (572)
...+..+...+.+.|++++|...|+.+... -+.+...|..+..+|...|++++|++.|++..+.... +...|..
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-----~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~ 109 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIY-----DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFH 109 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHH
Confidence 345667777888889999999999988874 1446778888888889999999999999988876432 4577888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 008265 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434 (572)
Q Consensus 404 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 434 (572)
+..+|.+.|++++|...|++..+. .|+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 888899999999999999988876 45543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.28 E-value=7.1e-05 Score=69.60 Aligned_cols=164 Identities=12% Similarity=-0.004 Sum_probs=78.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCC-CCcH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHH
Q 008265 226 NFVREFGKKRDLVSALRAYDASKKHLS-SPNM----YICRTIIDVCGICGDYMKSRAIYEDLRSQNVT-LN----IYVFN 295 (572)
Q Consensus 226 ~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-p~----~~~~~ 295 (572)
..+..+...|++++|..+++...+... .|+. ..+..+...+...|++++|+..|++..+.... ++ ...++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346667777778888877777765321 2221 12334555556666777777777776653211 11 11222
Q ss_pred HHHHHh--cCChHHHHHHHHHHHH----c-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCC-HHHH
Q 008265 296 SLMNVN--AHDLKFTLEVYKNMQK----L-GVMAD-MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTY 366 (572)
Q Consensus 296 ~ll~~~--~~~~~~a~~~~~~m~~----~-~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~~ 366 (572)
.+-.++ .|++++|+..|+++.+ . +..+. ..++..+...|.+.|++++|...+++..+........+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 222222 1444444444444432 1 11111 124445555555555555555555555543222111111 3345
Q ss_pred HHHHHHHHccc-cHHHHHHHHHHH
Q 008265 367 STIVKVFADAK-WWQMALKVKEDM 389 (572)
Q Consensus 367 ~~li~~~~~~g-~~~~a~~~~~~m 389 (572)
..+..+|.+.| .+++|.+.+++.
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHH
Confidence 55555555555 235555554444
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.25 E-value=0.00012 Score=67.57 Aligned_cols=194 Identities=9% Similarity=-0.117 Sum_probs=113.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 008265 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (572)
Q Consensus 222 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 301 (572)
..+..+...+.+.|++++|...|+...+... .+...|..+..+|.+.|++++|...+++..+.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---------------- 67 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALEL---------------- 67 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS----------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----------------
Confidence 3455566666666666667666666655422 24556666666666666666666666665543
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHH
Q 008265 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381 (572)
Q Consensus 302 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 381 (572)
. +-+...+..+..+|...|++++|...|....+.............+..+ ...+..
T Consensus 68 -----------------~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--~~~~~~---- 123 (281)
T 2c2l_A 68 -----------------D-GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--RIAKKK---- 123 (281)
T ss_dssp -----------------C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--HHHHHH----
T ss_pred -----------------C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--HHHHHH----
Confidence 1 1245677788889999999999999999988754332111111222222 111111
Q ss_pred HHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHh-CCHhHHHHHHHHh
Q 008265 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC-NILLQACVEA-CQFDRAFRLFRSW 459 (572)
Q Consensus 382 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~li~~~~~~-g~~~~A~~~~~~m 459 (572)
.+..........+......+ ..+ ..|+.++|.+.+++..+. .|+.... ..+-..+.+. +.+++|.++|.+.
T Consensus 124 ---~~~~~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a 196 (281)
T 2c2l_A 124 ---RWNSIEERRIHQESELHSYL-TRL-IAAERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQV 196 (281)
T ss_dssp ---HHHHHHHTCCCCCCHHHHHH-HHH-HHHHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ---HHHHHHHHHHhhhHHHHHHH-HHH-HHHHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 12223333334344443333 333 358889998888887755 5554433 3333334444 6788999999988
Q ss_pred hhcc
Q 008265 460 TLSK 463 (572)
Q Consensus 460 ~~~~ 463 (572)
.+..
T Consensus 197 ~~~~ 200 (281)
T 2c2l_A 197 DEKR 200 (281)
T ss_dssp SCTT
T ss_pred hccc
Confidence 7643
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.25 E-value=1.9e-05 Score=75.15 Aligned_cols=131 Identities=12% Similarity=-0.044 Sum_probs=111.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHHHccccHHHHHHHH
Q 008265 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD----------------VFTYSTIVKVFADAKWWQMALKVK 386 (572)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----------------~~~~~~li~~~~~~g~~~~a~~~~ 386 (572)
+...+..+...|.+.|++++|...|++.... .|+ ...|..+..+|.+.|++++|+..+
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~------~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~ 219 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSW------LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESC 219 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3556778888899999999999999999874 333 478999999999999999999999
Q ss_pred HHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHH-HHHHHHhhh
Q 008265 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA-FRLFRSWTL 461 (572)
Q Consensus 387 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A-~~~~~~m~~ 461 (572)
++..+.... +...|..+..+|...|++++|...|++..+.. +-+...+..+..++.+.|+.++| ..+|+.|..
T Consensus 220 ~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 220 NKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999887432 67889999999999999999999999998874 44678889999999999999988 557777654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.24 E-value=0.0033 Score=62.83 Aligned_cols=324 Identities=9% Similarity=-0.045 Sum_probs=163.0
Q ss_pred HHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhC-CCCCccc
Q 008265 113 LEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEF-RLPVKEL 191 (572)
Q Consensus 113 ~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~ 191 (572)
..++...+..+-. |+++.+..+|++.... .|+.. ++..+++-.... ....+....+|+..... |..+.+.
T Consensus 15 R~vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~----LW~~Y~~f~~~~--~~~~~~i~~~fe~al~~vg~d~~s~ 85 (493)
T 2uy1_A 15 SAIMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLD----LWMLYIEYVRKV--SQKKFKLYEVYEFTLGQFENYWDSY 85 (493)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHH----HHHHHHHHHHHH--C----CTHHHHHHHHHHSTTCTTCH
T ss_pred HHHHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHH----HHHHHHHHHHHh--CchHHHHHHHHHHHHHHcCCCcccH
Confidence 3445555555544 8999999999998885 46544 444444433332 11234566677765543 5556666
Q ss_pred chHHHHHHHHhc----CCChHHHHHhhhcC---CCch--hHHHHHHHHHHh-------------cCCHHHHHHHHHHHHh
Q 008265 192 DEEFRIVQLCVN----KPDVNLAIRYACIV---PRAD--ILFCNFVREFGK-------------KRDLVSALRAYDASKK 249 (572)
Q Consensus 192 ~~~~~ll~~~~~----~g~~~~a~~~~~~~---~~~~--~~~~~li~~~~~-------------~g~~~~a~~~~~~m~~ 249 (572)
..|...+.-+.. +++.+.+.++|+.. |... ..|......-.. .+.+..|..+++.+..
T Consensus 86 ~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~ 165 (493)
T 2uy1_A 86 GLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQP 165 (493)
T ss_dssp HHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 777777765542 35667777777664 3221 233332221111 1122333444444332
Q ss_pred cCCCCcHHHHHHHHHHHHhcC--C-----HHHHHHHHHHHHhCCCCCCHHHHHHHHHH--hcCChHHHHHHHHHHHHcCC
Q 008265 250 HLSSPNMYICRTIIDVCGICG--D-----YMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGV 320 (572)
Q Consensus 250 ~~~~~~~~~~~~ll~~~~~~g--~-----~~~a~~~~~~m~~~g~~p~~~~~~~ll~~--~~~~~~~a~~~~~~m~~~~~ 320 (572)
.-...+...|...+..-...+ - .+.+..+|+++.... +.+...|-..+.. ..|+.+.|..+++.....
T Consensus 166 ~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-- 242 (493)
T 2uy1_A 166 LIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-- 242 (493)
T ss_dssp HHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--
Confidence 100013335555444322211 1 234566777766542 2234444444332 336778888888887776
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH---H--hCCC---CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHC
Q 008265 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLE---A--KGVL---KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (572)
Q Consensus 321 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~--~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 392 (572)
+.+...+. .|....+.++. ++.+.+.. . .+.. .....+|...+....+.++++.|..+|... +.
T Consensus 243 P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~ 314 (493)
T 2uy1_A 243 SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN 314 (493)
T ss_dssp CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT
T ss_pred CCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC
Confidence 22322222 23322222211 22222110 0 0000 011235666666666677888888888887 22
Q ss_pred CCCCchhhHHH--HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHh
Q 008265 393 GVTPNTITWSS--LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (572)
Q Consensus 393 g~~p~~~~~~~--li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (572)
. ..+...|.. .+... ..++.+.|..+|+...+.- +-+...+...++-..+.|+.+.|..+|++.
T Consensus 315 ~-~~~~~v~i~~A~lE~~-~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 315 E-GVGPHVFIYCAFIEYY-ATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp S-CCCHHHHHHHHHHHHH-HHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred C-CCChHHHHHHHHHHHH-HCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1 112233322 22221 2236888888888887652 223445566666667788888888888764
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.23 E-value=8.8e-05 Score=65.06 Aligned_cols=70 Identities=16% Similarity=-0.027 Sum_probs=39.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCC----------CCC-CHHHHHHHHHHHHccccHHHHHHHHHHHHH
Q 008265 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV----------LKL-DVFTYSTIVKVFADAKWWQMALKVKEDMLS 391 (572)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----------~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 391 (572)
+...+..+..+|...|++++|...|+...+...... ..| ....+..+..+|.+.|++++|.+.|++..+
T Consensus 70 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 70 LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 345556666666666777777666666665311000 001 124555666666666666666666666665
Q ss_pred C
Q 008265 392 A 392 (572)
Q Consensus 392 ~ 392 (572)
.
T Consensus 150 ~ 150 (213)
T 1hh8_A 150 M 150 (213)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.22 E-value=2e-05 Score=66.95 Aligned_cols=118 Identities=10% Similarity=0.124 Sum_probs=89.6
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHccccH--
Q 008265 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV-FADAKWW-- 379 (572)
Q Consensus 303 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~-- 379 (572)
+++++|...+....+... .+...+..+...|...|++++|...|++..+.. +.+...+..+..+ +...|++
T Consensus 24 ~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-----GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp ---CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred cCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCHHHHHHHHHHHHHhcCCcch
Confidence 467777777777766543 366788888888889999999999998888752 3456677777777 7788888
Q ss_pred HHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 380 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
++|+..+++..+.... +...+..+...|...|++++|...|++..+.
T Consensus 98 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 98 AQTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 9999999888876322 4567778888888899999999999888875
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.21 E-value=2.5e-05 Score=64.23 Aligned_cols=100 Identities=11% Similarity=-0.112 Sum_probs=87.3
Q ss_pred CHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008265 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441 (572)
Q Consensus 362 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 441 (572)
+...+..+...+.+.|++++|+..|++..+.... +...|..+..+|...|++++|...|++..+.. +-+...|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 3447788888999999999999999999987432 67889999999999999999999999999874 446788999999
Q ss_pred HHHHhCCHhHHHHHHHHhhhcc
Q 008265 442 ACVEACQFDRAFRLFRSWTLSK 463 (572)
Q Consensus 442 ~~~~~g~~~~A~~~~~~m~~~~ 463 (572)
+|.+.|++++|...|++..+..
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999987653
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.20 E-value=0.00018 Score=66.86 Aligned_cols=123 Identities=7% Similarity=-0.019 Sum_probs=70.6
Q ss_pred CChHHHHHHHHHHHHcC---CCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHc
Q 008265 303 HDLKFTLEVYKNMQKLG---VMAD--MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL--DVFTYSTIVKVFAD 375 (572)
Q Consensus 303 ~~~~~a~~~~~~m~~~~---~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~~~~~li~~~~~ 375 (572)
|++++|+..+.+..+.. ..+. ..+++.+...|...|++++|...|++..+......-.+ ...++..+...|.+
T Consensus 129 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~ 208 (293)
T 2qfc_A 129 VDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL 208 (293)
T ss_dssp SCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHH
Confidence 34555555555544321 1111 34667777777888888888888877764321110011 12466777777777
Q ss_pred cccHHHHHHHHHHHHHCC----CCC-chhhHHHHHHHHHHcCCHHHH-HHHHHHHH
Q 008265 376 AKWWQMALKVKEDMLSAG----VTP-NTITWSSLINACANAGLVEQA-MHLFEEML 425 (572)
Q Consensus 376 ~g~~~~a~~~~~~m~~~g----~~p-~~~~~~~li~~~~~~g~~~~a-~~~~~~m~ 425 (572)
.|++++|+..+++..+.. ... -..+|..+..+|.+.|+.++| ...+++..
T Consensus 209 ~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 209 DSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 777777777777665431 111 134566666777777777777 55565544
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.19 E-value=7.5e-05 Score=59.25 Aligned_cols=102 Identities=8% Similarity=0.028 Sum_probs=88.0
Q ss_pred CCCCH-HHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 008265 359 LKLDV-FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCN 437 (572)
Q Consensus 359 ~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 437 (572)
+.|+. ..+......|.+.|++++|++.|++..+... .+...|..+..+|.+.|++++|+..+++..+.. +.+...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP-ENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHH
Confidence 34443 4677888999999999999999999987743 267889999999999999999999999999874 45688899
Q ss_pred HHHHHHHHhCCHhHHHHHHHHhhhc
Q 008265 438 ILLQACVEACQFDRAFRLFRSWTLS 462 (572)
Q Consensus 438 ~li~~~~~~g~~~~A~~~~~~m~~~ 462 (572)
.+..++...|++++|.+.|++..+.
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999988764
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.17 E-value=6.1e-05 Score=65.42 Aligned_cols=156 Identities=12% Similarity=0.008 Sum_probs=67.8
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHH--hcCCh
Q 008265 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ----NVTLN-IYVFNSLMNV--NAHDL 305 (572)
Q Consensus 233 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~~~~~ll~~--~~~~~ 305 (572)
..|++++|.++++.+... .......+..+...+...|++++|...+++..+. +..+. ...+..+-.. ..|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 345555555533333221 1123445555555556666666666655554431 11111 1111111111 12344
Q ss_pred HHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccc
Q 008265 306 KFTLEVYKNMQKL----GVMA--DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD--VFTYSTIVKVFADAK 377 (572)
Q Consensus 306 ~~a~~~~~~m~~~----~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g 377 (572)
++|...+++..+. +-.+ ....+..+...+...|++++|...+++......... .+. ..++..+...+...|
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD-DQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHCc
Confidence 4444444433221 1111 123455556666666777777776666654322110 111 123445555556666
Q ss_pred cHHHHHHHHHHHH
Q 008265 378 WWQMALKVKEDML 390 (572)
Q Consensus 378 ~~~~a~~~~~~m~ 390 (572)
++++|.+.+++..
T Consensus 162 ~~~~A~~~~~~al 174 (203)
T 3gw4_A 162 NLLEAQQHWLRAR 174 (203)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 6666665555543
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.16 E-value=7.8e-05 Score=58.52 Aligned_cols=98 Identities=15% Similarity=0.204 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008265 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442 (572)
Q Consensus 363 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 442 (572)
...|..+...+...|++++|.+.++++.+... .+...+..+...+...|++++|..+++++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 56788889999999999999999999987642 356788899999999999999999999998864 4577889999999
Q ss_pred HHHhCCHhHHHHHHHHhhhc
Q 008265 443 CVEACQFDRAFRLFRSWTLS 462 (572)
Q Consensus 443 ~~~~g~~~~A~~~~~~m~~~ 462 (572)
+.+.|++++|...|+++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 99999999999999988653
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.15 E-value=0.0001 Score=66.69 Aligned_cols=183 Identities=8% Similarity=-0.121 Sum_probs=84.6
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-------------
Q 008265 233 KKRDLVSALRAYDASKKHLSSPNMYICRTI-------IDVCGICGDYMKSRAIYEDLRSQNVTLNIY------------- 292 (572)
Q Consensus 233 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l-------l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~------------- 292 (572)
..++...|.+.|.+..+.... ....|..+ ...+.+.++..+++..+..-.+ +.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 578888888888888775322 34566655 2333333333333333333222 222210
Q ss_pred ---------HHHHHHHH--hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCC
Q 008265 293 ---------VFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL 361 (572)
Q Consensus 293 ---------~~~~ll~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 361 (572)
..-.+... -.|++++|.++|..+...+ |+......+...+.+.+++++|+..|+.... .|
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~-------~~ 165 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGK-------WP 165 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG-------CS
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhc-------cC
Confidence 00011111 1245555555555554332 2222333333455555555555555553322 11
Q ss_pred C----HHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCc--hhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 362 D----VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN--TITWSSLINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 362 ~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
+ ...+..+-.++.+.|++++|++.|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 166 d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 166 DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 1 12344455555555555555555555543221132 123344444555555555555555555554
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=1.8e-05 Score=65.04 Aligned_cols=95 Identities=7% Similarity=-0.080 Sum_probs=49.9
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008265 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444 (572)
Q Consensus 365 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 444 (572)
.+..+...+.+.|++++|+..|+........ +...|..+..+|...|++++|...|++..+.. +.+...+..+..++.
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 4444455555555555555555555544211 44455555555555555555555555555442 223445555555555
Q ss_pred HhCCHhHHHHHHHHhhh
Q 008265 445 EACQFDRAFRLFRSWTL 461 (572)
Q Consensus 445 ~~g~~~~A~~~~~~m~~ 461 (572)
..|++++|.+.|++..+
T Consensus 101 ~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQE 117 (148)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555543
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00014 Score=57.48 Aligned_cols=98 Identities=11% Similarity=-0.007 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHH
Q 008265 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (572)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 403 (572)
...+..+...+.+.|++++|...|++..+. .+.+...|..+..+|.+.|++++|+..+++..+.... +...|..
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~ 77 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKR-----APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIR 77 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHH
Confidence 345666777888888899999888888774 2345678888888888888888888888888876432 4667888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 404 LINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 404 li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
+..++...|++++|...|++..+.
T Consensus 78 lg~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 78 KATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHh
Confidence 888888888888888888888764
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00026 Score=58.98 Aligned_cols=61 Identities=15% Similarity=0.049 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHccccHHHHHHHHHHH
Q 008265 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY--STIVKVFADAKWWQMALKVKEDM 389 (572)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~m 389 (572)
...+..+..++...|++++|...|++..+.. +.+...+ ..+...+.+.|++++|++.+...
T Consensus 81 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-----p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 81 IKGYYRRAASNMALGKFRAALRDYETVVKVK-----PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 4445555556666666666666666665521 1223333 22222344556666666555544
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.09 E-value=3.3e-05 Score=65.61 Aligned_cols=122 Identities=9% Similarity=0.045 Sum_probs=98.7
Q ss_pred HHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHH-HHHcCC
Q 008265 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA-CANAGL 413 (572)
Q Consensus 335 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~ 413 (572)
...|++++|...++..... .+.+...|..+...|...|++++|+..|++..+.... +...+..+..+ +...|+
T Consensus 21 ~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~ 94 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA-----NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQ 94 (177)
T ss_dssp C-----CCCCHHHHHHHHH-----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTT
T ss_pred hhccCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCC
Confidence 4568889999999988763 2456789999999999999999999999999876432 56677778888 778999
Q ss_pred H--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhcc
Q 008265 414 V--EQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463 (572)
Q Consensus 414 ~--~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 463 (572)
+ ++|...+++..+.. +.+...+..+...+...|++++|...|++..+..
T Consensus 95 ~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 95 HMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp CCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred cchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 8 99999999998874 4457888899999999999999999999987654
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00011 Score=58.35 Aligned_cols=107 Identities=15% Similarity=0.109 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCC--Cc----h
Q 008265 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT--PN----T 398 (572)
Q Consensus 325 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p~----~ 398 (572)
..+..+...+.+.|++++|+..|++..++ -+.+...|..+..+|.+.|++++|++.+++..+.... ++ .
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~-----~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a 83 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIEL-----DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIA 83 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHH
Confidence 45667788888999999999999988874 2345678888888999999999999998887754211 11 1
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 008265 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438 (572)
Q Consensus 399 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 438 (572)
.+|..+..++...|++++|.+.|++..+. .||..+...
T Consensus 84 ~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~ 121 (127)
T 4gcn_A 84 KAMSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKK 121 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHH
Confidence 35666777888889999999999888764 566555443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00019 Score=55.61 Aligned_cols=98 Identities=18% Similarity=0.067 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHH
Q 008265 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (572)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 403 (572)
...+..+...+...|++++|...|+..... .+.+...+..+...+...|++++|...+++..+.... +...+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 77 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL-----DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSR 77 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH-----CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHH
Confidence 455667777888888888888888888763 1346677788888888888888888888888776322 4667777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 404 LINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 404 li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
+..++...|++++|.+.+++..+.
T Consensus 78 ~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 78 KAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHc
Confidence 888888888888888888888765
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.07 E-value=8.4e-05 Score=58.98 Aligned_cols=112 Identities=13% Similarity=0.117 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCC--Cc----
Q 008265 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT--PN---- 397 (572)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p~---- 397 (572)
...+..+...+...|++++|...|.+.... .+.+...+..+...|...|++++|...+++..+.... ++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 78 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL-----DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQI 78 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHH
Confidence 345667778888889999999999888764 2446677888888888899999999888887765221 11
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008265 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442 (572)
Q Consensus 398 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 442 (572)
..+|..+..++...|++++|.+.|++..+. .|+......+...
T Consensus 79 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 121 (131)
T 1elr_A 79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHH
Confidence 567778888888999999999999888876 3566555554444
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=2.6e-05 Score=64.01 Aligned_cols=99 Identities=8% Similarity=-0.075 Sum_probs=80.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHH
Q 008265 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (572)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 402 (572)
+...+..+...+.+.|++++|...|+..... -+.+...|..+..+|...|++++|+..|++....... +...|.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~ 93 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVL-----DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPF 93 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-----CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHH
Confidence 3445667778888999999999999998874 2446778888889999999999999999998876422 557788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 403 SLINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 403 ~li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
.+..+|...|++++|...|+...+.
T Consensus 94 ~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 94 HAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8889999999999999999988764
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=0.0021 Score=60.24 Aligned_cols=230 Identities=11% Similarity=-0.000 Sum_probs=157.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHH---H
Q 008265 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG-DYMKSRAIYEDLRSQNVTLNIYVFNSL---M 298 (572)
Q Consensus 223 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~l---l 298 (572)
.++.+-....+.+..++|+++++.+...... +..+|+.--..+...| .+++++++++.+..... -+...|+-- +
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL 133 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHH
Confidence 4444444555556667899999988876433 4567777777777778 59999999999887642 233344332 3
Q ss_pred HHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChH--------HHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008265 299 NVNAH-DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV--------LAQEIYGEVKHLEAKGVLKLDVFTYSTI 369 (572)
Q Consensus 299 ~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~~~~~l 369 (572)
....+ ++++++++++.+.+...+ |...|+--.-.+.+.|.++ ++.+.++++.+. -+-|...|+..
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~-----dp~N~SAW~~R 207 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV-----DGRNNSAWGWR 207 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH-----CTTCHHHHHHH
T ss_pred HHhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh-----CCCCHHHHHHH
Confidence 33335 788899999998876544 7777776665666656555 888888888764 24577788888
Q ss_pred HHHHHcccc-------HHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCH--------------------HHHHHHHH
Q 008265 370 VKVFADAKW-------WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV--------------------EQAMHLFE 422 (572)
Q Consensus 370 i~~~~~~g~-------~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~--------------------~~a~~~~~ 422 (572)
...+.+.++ ++++++.++++...... |...|+.+-..+.+.|+. .+..+...
T Consensus 208 ~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (349)
T 3q7a_A 208 WYLRVSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGF 286 (349)
T ss_dssp HHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------C
T ss_pred HHHHHhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHH
Confidence 888877775 78899999888876443 777888777777776653 22333333
Q ss_pred HHHHcC-----CCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 423 EMLQAG-----CEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 423 ~m~~~~-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
++...+ -.+....+..+.+.|...|+.++|.++++.+.+
T Consensus 287 ~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 287 PMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 332221 135778888999999999999999999999863
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00022 Score=58.01 Aligned_cols=99 Identities=9% Similarity=-0.015 Sum_probs=78.6
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCc
Q 008265 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD----VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397 (572)
Q Consensus 322 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 397 (572)
.+...+..+...+...|++++|...|++..+ ..|+ ...|..+..+|...|++++|+..+++..+... .+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~------~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~ 98 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALG------LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-GD 98 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHT------SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-CC
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH------HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-cC
Confidence 3566777788888888999999999988876 4565 56778888888888999999988888877632 25
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 398 TITWSSLINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 398 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
...|..+..+|...|++++|...|++..+.
T Consensus 99 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 99 VKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 667778888888889999999888888775
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.99 E-value=0.0001 Score=63.93 Aligned_cols=50 Identities=14% Similarity=-0.073 Sum_probs=22.9
Q ss_pred HHhcCCChHHHHHhhhcCCCc----hhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008265 200 LCVNKPDVNLAIRYACIVPRA----DILFCNFVREFGKKRDLVSALRAYDASKK 249 (572)
Q Consensus 200 ~~~~~g~~~~a~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 249 (572)
.....|.++.+.+.++..... ...+..+...+.+.|++++|...|+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 66 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALD 66 (198)
T ss_dssp ---------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333445555555555433211 13455566666666777777776666655
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.99 E-value=6.7e-05 Score=57.63 Aligned_cols=99 Identities=14% Similarity=-0.016 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHH
Q 008265 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP--NSQCCNILL 440 (572)
Q Consensus 363 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li 440 (572)
...+..+...+...|++++|...+++..+... .+...|..+...+...|++++|...+++..+.. +. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 34555666667777777777777777665532 245566667777777777777777777776653 22 466677777
Q ss_pred HHHHHh-CCHhHHHHHHHHhhhcc
Q 008265 441 QACVEA-CQFDRAFRLFRSWTLSK 463 (572)
Q Consensus 441 ~~~~~~-g~~~~A~~~~~~m~~~~ 463 (572)
.++.+. |++++|.+.+++.....
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcc
Confidence 777777 77777777777766543
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00013 Score=57.85 Aligned_cols=99 Identities=11% Similarity=0.045 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008265 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442 (572)
Q Consensus 363 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 442 (572)
...|..+...+.+.|++++|+..|++..+.... +...|..+..+|.+.|++++|...+++..+.. +.+...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 456777888899999999999999999887432 67889999999999999999999999999874 4467889999999
Q ss_pred HHHhCCHhHHHHHHHHhhhcc
Q 008265 443 CVEACQFDRAFRLFRSWTLSK 463 (572)
Q Consensus 443 ~~~~g~~~~A~~~~~~m~~~~ 463 (572)
+...|++++|.+.|++..+..
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhC
Confidence 999999999999999887654
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00042 Score=55.53 Aligned_cols=100 Identities=10% Similarity=-0.030 Sum_probs=78.0
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhH
Q 008265 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401 (572)
Q Consensus 322 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 401 (572)
.+...+..+...+...|++++|...|...... .+.+...|..+..++...|++++|+..+++..+.... +...|
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~ 80 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR-----NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAH 80 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh-----CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHH
Confidence 35677778888888888888888888888764 2345677888888888888888888888888776432 56678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 402 SSLINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 402 ~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
..+..+|...|++++|...|++..+.
T Consensus 81 ~~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 81 FFLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 88888888888888888888887653
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00028 Score=58.87 Aligned_cols=99 Identities=13% Similarity=0.060 Sum_probs=83.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHH
Q 008265 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (572)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 402 (572)
+...+..+...+.+.|++++|+..|++..+. .+.+...|..+..+|.+.|++++|+..|++..+.... +...|.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~ 83 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI-----APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWS 83 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 4556777888899999999999999999874 2346778899999999999999999999998887432 567888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 403 SLINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 403 ~li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
.+..+|...|++++|...|++..+.
T Consensus 84 ~lg~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 84 RLGLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHh
Confidence 8999999999999999999998875
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00015 Score=62.82 Aligned_cols=136 Identities=12% Similarity=-0.058 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCC-----------HHHHHHHHHHHHccccHHHHHHHHHHHHHC
Q 008265 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-----------VFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (572)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-----------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 392 (572)
...+..+...+.+.|++++|...|++............. ...|..+..+|.+.|++++|+..+++..+.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 345667778888999999999999998874211100001 267888889999999999999999998876
Q ss_pred CCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHH-HHHHHhhh
Q 008265 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF-RLFRSWTL 461 (572)
Q Consensus 393 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~ 461 (572)
.. .+...+..+..+|...|++++|...|++..+.. +-+...+..+..++...++.+++. ..+..|..
T Consensus 118 ~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 118 DK-NNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp ST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred Cc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 32 356788889999999999999999999998763 346677888888888877777666 55555543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=0.0039 Score=58.36 Aligned_cols=198 Identities=10% Similarity=0.006 Sum_probs=112.2
Q ss_pred hHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc-C-CHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008265 222 ILFCNFVREFGKKR-DLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC-G-DYMKSRAIYEDLRSQNVTLNIYVFNSLM 298 (572)
Q Consensus 222 ~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-g-~~~~a~~~~~~m~~~g~~p~~~~~~~ll 298 (572)
.+|+.--..+...| .+++++++++.+.....+ +..+|+.--..+.+. + ++++++++++.+.+.. +-|-..|+---
T Consensus 89 taWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~ 166 (349)
T 3q7a_A 89 TVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLH 166 (349)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 33444333344445 477777777777665432 455666655555555 5 6677777777776553 12333333221
Q ss_pred H--HhcCCh--------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-------hHHHHHHHHHHHHHHHhCCCCC
Q 008265 299 N--VNAHDL--------KFTLEVYKNMQKLGVMADMASYNILLKACCLAGN-------TVLAQEIYGEVKHLEAKGVLKL 361 (572)
Q Consensus 299 ~--~~~~~~--------~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~ 361 (572)
. ...+.+ .++++.++++.+..+. |...|+.....+.+.++ ++++.+.++++... .+-
T Consensus 167 wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~-----~P~ 240 (349)
T 3q7a_A 167 WLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL-----IPH 240 (349)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH-----CTT
T ss_pred HHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh-----CCC
Confidence 1 111222 3677777777776544 67777776666666665 56677777766653 244
Q ss_pred CHHHHHHHHHHHHccccH--------------------HHHHHHHHHHHHCC-----CCCchhhHHHHHHHHHHcCCHHH
Q 008265 362 DVFTYSTIVKVFADAKWW--------------------QMALKVKEDMLSAG-----VTPNTITWSSLINACANAGLVEQ 416 (572)
Q Consensus 362 ~~~~~~~li~~~~~~g~~--------------------~~a~~~~~~m~~~g-----~~p~~~~~~~li~~~~~~g~~~~ 416 (572)
|...|+-+-..+.+.|+. ....+...++...+ -.++...+..++..|...|+.++
T Consensus 241 n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~ 320 (349)
T 3q7a_A 241 NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDD 320 (349)
T ss_dssp CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHH
Confidence 566676655555544432 22333333332221 12466778888888888888889
Q ss_pred HHHHHHHHHHc
Q 008265 417 AMHLFEEMLQA 427 (572)
Q Consensus 417 a~~~~~~m~~~ 427 (572)
|.++++.+.+.
T Consensus 321 a~~~~~~l~~~ 331 (349)
T 3q7a_A 321 AAKVFEKLSSE 331 (349)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhh
Confidence 99998888643
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00021 Score=57.43 Aligned_cols=102 Identities=10% Similarity=-0.018 Sum_probs=89.5
Q ss_pred CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 008265 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439 (572)
Q Consensus 360 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 439 (572)
+.+...|..+...+...|++++|+..|.+..+.... +...|..+..++...|++++|...+++..+.. +.+...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 456788999999999999999999999998877432 56789999999999999999999999998874 4467889999
Q ss_pred HHHHHHhCCHhHHHHHHHHhhhcc
Q 008265 440 LQACVEACQFDRAFRLFRSWTLSK 463 (572)
Q Consensus 440 i~~~~~~g~~~~A~~~~~~m~~~~ 463 (572)
..++...|++++|...|++..+..
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHC
Confidence 999999999999999999987654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00012 Score=59.40 Aligned_cols=93 Identities=14% Similarity=-0.042 Sum_probs=43.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHH
Q 008265 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407 (572)
Q Consensus 328 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 407 (572)
..+...+.+.|++++|...|+..... -+.+...|..+..+|.+.|++++|+..|++....... +...|..+..+
T Consensus 22 ~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 95 (142)
T 2xcb_A 22 YALGFNQYQAGKWDDAQKIFQALCML-----DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHh-----CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHH
Confidence 33444444555555555555555442 1223444444455555555555555555554443211 23344444445
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 008265 408 CANAGLVEQAMHLFEEMLQ 426 (572)
Q Consensus 408 ~~~~g~~~~a~~~~~~m~~ 426 (572)
|...|++++|...|+...+
T Consensus 96 ~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5555555555555554443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=97.95 E-value=0.0004 Score=54.86 Aligned_cols=99 Identities=10% Similarity=0.014 Sum_probs=85.5
Q ss_pred CHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008265 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441 (572)
Q Consensus 362 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 441 (572)
+...+..+...+...|++++|.+.+++..+... .+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 456788888999999999999999999887632 266788899999999999999999999998864 446788899999
Q ss_pred HHHHhCCHhHHHHHHHHhhhc
Q 008265 442 ACVEACQFDRAFRLFRSWTLS 462 (572)
Q Consensus 442 ~~~~~g~~~~A~~~~~~m~~~ 462 (572)
.+.+.|++++|...|++..+.
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhc
Confidence 999999999999999987653
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00014 Score=67.05 Aligned_cols=92 Identities=11% Similarity=-0.113 Sum_probs=69.0
Q ss_pred hHHHHHHHHhcCCChHHHHHhhhcC----CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Q 008265 193 EEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGI 268 (572)
Q Consensus 193 ~~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 268 (572)
.+..+...+...|++++|+..++.. |.+...+..+...|.+.|++++|...++...+... .+...+..+..+|..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~ 84 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQCQLE 84 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 3444555555566666665555442 44557788889999999999999999999887532 357788888999999
Q ss_pred cCCHHHHHHHHHHHHhC
Q 008265 269 CGDYMKSRAIYEDLRSQ 285 (572)
Q Consensus 269 ~g~~~~a~~~~~~m~~~ 285 (572)
.|++++|...|++..+.
T Consensus 85 ~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 85 MESYDEAIANLQRAYSL 101 (281)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999887754
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00047 Score=53.25 Aligned_cols=99 Identities=13% Similarity=-0.021 Sum_probs=84.9
Q ss_pred CHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008265 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441 (572)
Q Consensus 362 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 441 (572)
....+..+...+...|++++|...+++..+... .+...+..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 345677888899999999999999999987632 267788889999999999999999999998864 446788899999
Q ss_pred HHHHhCCHhHHHHHHHHhhhc
Q 008265 442 ACVEACQFDRAFRLFRSWTLS 462 (572)
Q Consensus 442 ~~~~~g~~~~A~~~~~~m~~~ 462 (572)
++.+.|++++|.+.+++..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhhHHHHHHHHHHHHHc
Confidence 999999999999999987653
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00062 Score=67.12 Aligned_cols=214 Identities=6% Similarity=-0.085 Sum_probs=127.1
Q ss_pred HHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHH
Q 008265 163 QRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALR 242 (572)
Q Consensus 163 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 242 (572)
..+.+.|++++|++.|..+.+......+.... .+....... .....+..+...|.+.|++++|.+
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~---------~~~~~~~~~------~~~~al~~l~~~y~~~~~~~~a~~ 76 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAG---------ASVDDKRRN------EQETSILELGQLYVTMGAKDKLRE 76 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSS---------SSBCSHHHH------HHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHH---------HHHHHHHhh------hHHHHHHHHHHHHHHCCCHHHHHH
Confidence 34556899999999999988764332221110 000000000 001345667777788888888887
Q ss_pred HHHHHHhc-CCCCcH----HHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHh--cCChHHHHH
Q 008265 243 AYDASKKH-LSSPNM----YICRTIIDVCGICGDYMKSRAIYEDLRS----QNVTLN-IYVFNSLMNVN--AHDLKFTLE 310 (572)
Q Consensus 243 ~~~~m~~~-~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~m~~----~g~~p~-~~~~~~ll~~~--~~~~~~a~~ 310 (572)
.+..+.+. +..++. .+.+.+-..+...|++++|..+++.... .+..+. ..++..+...+ .|++++|..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 156 (434)
T 4b4t_Q 77 FIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLA 156 (434)
T ss_dssp HHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHH
Confidence 77765442 111222 1223333334455777888777776643 222232 23344444443 377888888
Q ss_pred HHHHHHHc----CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccccHHHHH
Q 008265 311 VYKNMQKL----GVMA-DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD--VFTYSTIVKVFADAKWWQMAL 383 (572)
Q Consensus 311 ~~~~m~~~----~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~ 383 (572)
+++++... +-++ ....+..++..|...|++++|..+++........-..++. ...+..+...+...|++++|.
T Consensus 157 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~ 236 (434)
T 4b4t_Q 157 LINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAF 236 (434)
T ss_dssp HHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHH
T ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 77776542 1111 2456788889999999999999999988765433211222 245667777788899999998
Q ss_pred HHHHHHHH
Q 008265 384 KVKEDMLS 391 (572)
Q Consensus 384 ~~~~~m~~ 391 (572)
..|.+..+
T Consensus 237 ~~~~~a~~ 244 (434)
T 4b4t_Q 237 SYFFESFE 244 (434)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877653
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00021 Score=58.03 Aligned_cols=99 Identities=14% Similarity=-0.000 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008265 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442 (572)
Q Consensus 363 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 442 (572)
...+..+...+.+.|++++|+..|++....... +...|..+..+|.+.|++++|...|++..+.. +.+...+..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence 335566667778888888888888888776332 56677778888888888888888888887764 3456677778888
Q ss_pred HHHhCCHhHHHHHHHHhhhcc
Q 008265 443 CVEACQFDRAFRLFRSWTLSK 463 (572)
Q Consensus 443 ~~~~g~~~~A~~~~~~m~~~~ 463 (572)
+...|++++|.+.|++..+..
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC
Confidence 888888888888888877654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00049 Score=54.62 Aligned_cols=95 Identities=13% Similarity=0.170 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc--CChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008265 256 MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKA 333 (572)
Q Consensus 256 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 333 (572)
...|..+...+.+.|++++|...|++..+.. +.+...+..+..++. +++++|+..+++..+... .+...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHHHH
Confidence 3444455555555555555555555554431 011222222222111 333333333333333221 134445555555
Q ss_pred HHHcCChHHHHHHHHHHHH
Q 008265 334 CCLAGNTVLAQEIYGEVKH 352 (572)
Q Consensus 334 ~~~~g~~~~a~~~~~~~~~ 352 (572)
+.+.|++++|...|++..+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 5566666666666655554
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00015 Score=55.68 Aligned_cols=98 Identities=9% Similarity=0.014 Sum_probs=68.2
Q ss_pred CcccchHHHHHHHHhcCCChHHHHHhhhcC----CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CcHHHHHHH
Q 008265 188 VKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSS-PNMYICRTI 262 (572)
Q Consensus 188 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~l 262 (572)
|.+...+..+...+...|++++|...++.. +.+...+..+...+...|++++|...|+...+.... .+...+..+
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 444455666666677777777776666542 444566777777888888888888888877765321 146677777
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHhC
Q 008265 263 IDVCGIC-GDYMKSRAIYEDLRSQ 285 (572)
Q Consensus 263 l~~~~~~-g~~~~a~~~~~~m~~~ 285 (572)
...+.+. |++++|.+.|+...+.
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc
Confidence 7888888 8888888888887765
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.0012 Score=65.11 Aligned_cols=199 Identities=11% Similarity=-0.104 Sum_probs=138.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCc----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCC
Q 008265 228 VREFGKKRDLVSALRAYDASKKHLSSPN----------------MYICRTIIDVCGICGDYMKSRAIYEDLRSQ-NVTLN 290 (572)
Q Consensus 228 i~~~~~~g~~~~a~~~~~~m~~~~~~~~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~p~ 290 (572)
...+.+.|++++|.+.|..+.+...... ...+..+...|.+.|++++|.+.+..+... +-.++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3456778999999999998876532211 134778899999999999999999887643 11122
Q ss_pred HH---HHHHHHHHh---cCChHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCC
Q 008265 291 IY---VFNSLMNVN---AHDLKFTLEVYKNMQK----LGVMAD-MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL 359 (572)
Q Consensus 291 ~~---~~~~ll~~~---~~~~~~a~~~~~~m~~----~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 359 (572)
.. .....+... .++.+.+..++..... .+..+. ..++..+...|...|++++|..++.++........-
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 22 222223322 2678999888887653 333333 456778899999999999999999988764322111
Q ss_pred CC-CHHHHHHHHHHHHccccHHHHHHHHHHHHHC----CCCCc--hhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008265 360 KL-DVFTYSTIVKVFADAKWWQMALKVKEDMLSA----GVTPN--TITWSSLINACANAGLVEQAMHLFEEMLQ 426 (572)
Q Consensus 360 ~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 426 (572)
.+ ....+..++..|...|++++|..++++.... +..+. ...+..+...+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 12 2447888999999999999999999887643 11111 24566667777888999999988887754
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00013 Score=60.30 Aligned_cols=137 Identities=15% Similarity=0.026 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHC----CCCC-ch
Q 008265 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG-VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA----GVTP-NT 398 (572)
Q Consensus 325 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~ 398 (572)
.++..+...+...|++++|...+.+..+..... ....-..++..+...+...|++++|.+.+++..+. +..+ ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 457778888999999999999999988754321 10111247788888999999999999999987653 1111 13
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 399 ITWSSLINACANAGLVEQAMHLFEEMLQA----GCEP-NSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 399 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
..+..+...+...|++++|.+.+++..+. +..+ ...++..+...+...|++++|.+.+++..+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 46778888999999999999999988642 2111 135677888889999999999999988764
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00017 Score=60.18 Aligned_cols=101 Identities=16% Similarity=0.049 Sum_probs=88.6
Q ss_pred CCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008265 361 LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440 (572)
Q Consensus 361 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 440 (572)
.+...+..+...+.+.|++++|++.|++..+.... +...|..+..+|.+.|++++|...|++..+.. +-+...|..+.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 35667888889999999999999999999887432 67889999999999999999999999999874 44688899999
Q ss_pred HHHHHhCCHhHHHHHHHHhhhcc
Q 008265 441 QACVEACQFDRAFRLFRSWTLSK 463 (572)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~m~~~~ 463 (572)
.++.+.|++++|.+.|++..+..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC
Confidence 99999999999999999987654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00052 Score=65.07 Aligned_cols=86 Identities=12% Similarity=-0.129 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHH
Q 008265 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405 (572)
Q Consensus 326 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 405 (572)
.+..+..+|.+.|++++|+..|++..+. -+.+...|..+..+|...|++++|+..|++..+.... +...+..+.
T Consensus 198 ~~~nla~~~~~~g~~~~A~~~~~~al~~-----~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~ 271 (336)
T 1p5q_A 198 SHLNLAMCHLKLQAFSAAIESCNKALEL-----DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLA 271 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHH
Confidence 3444455555555555555555555542 1223445555555555555555555555555544221 334445555
Q ss_pred HHHHHcCCHHHH
Q 008265 406 NACANAGLVEQA 417 (572)
Q Consensus 406 ~~~~~~g~~~~a 417 (572)
.++.+.|+.+++
T Consensus 272 ~~~~~~~~~~~a 283 (336)
T 1p5q_A 272 VCQQRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555554
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00046 Score=56.08 Aligned_cols=101 Identities=9% Similarity=-0.052 Sum_probs=87.6
Q ss_pred CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCc----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 008265 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN----TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQC 435 (572)
Q Consensus 360 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 435 (572)
+.+...+..+...+...|++++|.+.|++..+. .|+ ...|..+..+|...|++++|...+++..+.. +.+...
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 101 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKA 101 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHH
Confidence 346778888999999999999999999999886 455 6788889999999999999999999998763 446788
Q ss_pred HHHHHHHHHHhCCHhHHHHHHHHhhhcc
Q 008265 436 CNILLQACVEACQFDRAFRLFRSWTLSK 463 (572)
Q Consensus 436 ~~~li~~~~~~g~~~~A~~~~~~m~~~~ 463 (572)
+..+..++...|++++|...|++..+..
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 8899999999999999999999887653
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00033 Score=55.53 Aligned_cols=98 Identities=8% Similarity=0.062 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCC----HHHH
Q 008265 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG--CEPN----SQCC 436 (572)
Q Consensus 363 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~----~~~~ 436 (572)
...+..+...+.+.|++++|++.|++..+.... +...|..+..+|.+.|++++|++.+++..+.. ..++ ..+|
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 346778889999999999999999999886432 56788999999999999999999999987632 1222 2467
Q ss_pred HHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 437 NILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 437 ~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
..+..++...|++++|.+.|++...
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7788889999999999999988654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00023 Score=55.90 Aligned_cols=92 Identities=13% Similarity=0.029 Sum_probs=50.1
Q ss_pred HHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Q 008265 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447 (572)
Q Consensus 368 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 447 (572)
.+...+.+.|++++|+..|++..+.... +...|..+..++...|++++|...|++..+.. +-+...+..+..++.+.|
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 3444555556666666666655554211 44455555555566666666666666655542 224455555555566666
Q ss_pred CHhHHHHHHHHhhh
Q 008265 448 QFDRAFRLFRSWTL 461 (572)
Q Consensus 448 ~~~~A~~~~~~m~~ 461 (572)
++++|...|++..+
T Consensus 100 ~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 100 NANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666655543
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00044 Score=54.67 Aligned_cols=98 Identities=10% Similarity=0.091 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCC----HHHH
Q 008265 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC--EPN----SQCC 436 (572)
Q Consensus 363 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~----~~~~ 436 (572)
...+..+...+...|++++|...|.+..+... .+...+..+...+...|++++|...+++..+... .++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 35677888899999999999999999987642 3667888899999999999999999999886531 222 6788
Q ss_pred HHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 437 NILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 437 ~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
..+..++.+.|++++|.+.|++..+
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHH
Confidence 8899999999999999999998765
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00027 Score=55.49 Aligned_cols=95 Identities=9% Similarity=-0.085 Sum_probs=71.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHH
Q 008265 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406 (572)
Q Consensus 327 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 406 (572)
+..+...+.+.|++++|...|+...+. -+.+...|..+..++...|++++|+..|++..+.... +...+..+..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~-----~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~ 93 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK-----EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAV 93 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 344556777888888888888888763 1346677888888888888888888888888776332 4567777888
Q ss_pred HHHHcCCHHHHHHHHHHHHHc
Q 008265 407 ACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 407 ~~~~~g~~~~a~~~~~~m~~~ 427 (572)
++...|++++|...+++..+.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 94 SHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888887754
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.0006 Score=53.91 Aligned_cols=92 Identities=13% Similarity=0.018 Sum_probs=70.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCC-H---HHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCc---hhhH
Q 008265 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-V---FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN---TITW 401 (572)
Q Consensus 329 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~ 401 (572)
.+...+...|++++|...|+.+.+. .|+ . ..+..+..++.+.|++++|...|++..+.... + ...+
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~ 79 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLEL------YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGL 79 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH------CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH------CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHH
Confidence 3456677889999999999988763 232 2 46777788888899999999999988876322 2 4557
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 402 SSLINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 402 ~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
..+..++...|++++|...|+++.+.
T Consensus 80 ~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 80 LKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77888888899999999999988876
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00047 Score=56.86 Aligned_cols=149 Identities=7% Similarity=-0.075 Sum_probs=92.9
Q ss_pred hhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCC-Ccc
Q 008265 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVA-PLE 148 (572)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~ 148 (572)
....+..+...+...|++++|+..+++..+...... .......++..+...+...|++++|+..+++..+..-. ++.
T Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 85 (164)
T 3ro3_A 8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG--DKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 85 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhC--CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Confidence 356788888999999999999999999886532211 11112445667778889999999999999887764211 111
Q ss_pred hhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHH
Q 008265 149 LFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFV 228 (572)
Q Consensus 149 ~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li 228 (572)
.. ....+......+...|++++|...+++..+..... ++.. .....+..+.
T Consensus 86 ~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----------------~~~~----------~~~~~~~~la 136 (164)
T 3ro3_A 86 AV---EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL----------------KDRI----------GEGRACWSLG 136 (164)
T ss_dssp HH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----------------TCHH----------HHHHHHHHHH
T ss_pred HH---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc----------------cchH----------hHHHHHHHHH
Confidence 11 11222222233345788888888877654321000 0000 0014566777
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 008265 229 REFGKKRDLVSALRAYDASKK 249 (572)
Q Consensus 229 ~~~~~~g~~~~a~~~~~~m~~ 249 (572)
..+...|++++|.+.+++..+
T Consensus 137 ~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 137 NAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHH
Confidence 888888888888888877654
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00032 Score=69.73 Aligned_cols=132 Identities=13% Similarity=0.082 Sum_probs=105.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCC---------------HHHHHHHHHHHHccccHHHHHHHHH
Q 008265 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD---------------VFTYSTIVKVFADAKWWQMALKVKE 387 (572)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---------------~~~~~~li~~~~~~g~~~~a~~~~~ 387 (572)
....+..+...|.+.|++++|...|++..+.. +.+ ...|..+..+|.+.|++++|+..++
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-----p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~ 341 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-----EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCD 341 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-----cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 34567788889999999999999999998753 122 5788999999999999999999999
Q ss_pred HHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHH-HHHHHhhh
Q 008265 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF-RLFRSWTL 461 (572)
Q Consensus 388 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~ 461 (572)
+..+.... +...|..+..+|...|++++|...|++..+.. +-+...+..+..++.+.++.+++. .++..|..
T Consensus 342 ~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 342 KALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99887433 67788999999999999999999999998763 335567888888888999888776 45565543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00015 Score=72.34 Aligned_cols=120 Identities=12% Similarity=0.087 Sum_probs=87.9
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHc
Q 008265 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411 (572)
Q Consensus 332 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 411 (572)
..+.+.|++++|.+.|++..+. .+.+...|..+..+|.+.|++++|++.+++..+.... +...|..+..+|.+.
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIEL-----NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMAL 87 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHh-----CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 3456788999999999988874 1345778888889999999999999999998887432 567788888899999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHHhCCHhHHHHHHHH
Q 008265 412 GLVEQAMHLFEEMLQAGCEPNSQCCNILLQA--CVEACQFDRAFRLFRS 458 (572)
Q Consensus 412 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~ 458 (572)
|++++|.+.|++..+.. +-+...+..+..+ +.+.|++++|.+.+++
T Consensus 88 g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 88 GKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999988753 2233344444444 7888999999998873
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00083 Score=64.50 Aligned_cols=129 Identities=12% Similarity=0.006 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhC-----------CCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCC
Q 008265 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG-----------VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393 (572)
Q Consensus 325 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 393 (572)
..+..+...+.+.|++++|+..|++..+..... .-+.+..+|..+..+|.+.|++++|++.+++..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 346677788889999999999998887621110 012345688889999999999999999999999864
Q ss_pred CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHH
Q 008265 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455 (572)
Q Consensus 394 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 455 (572)
.. +...|..+..+|...|++++|...|++..+.. +-+...+..+..++.+.++.+++.+.
T Consensus 304 p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 304 PS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 56788889999999999999999999998863 33667777777777777777766543
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00076 Score=53.31 Aligned_cols=94 Identities=10% Similarity=-0.081 Sum_probs=78.0
Q ss_pred HHHHHHHHccccHHHHHHHHHHHHHCCCCCch----hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHH
Q 008265 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNT----ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN---SQCCNIL 439 (572)
Q Consensus 367 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~l 439 (572)
..+...+...|++++|...|+.+.+.. |+. ..+..+..++.+.|++++|...|++..+.. +.+ ...+..+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~l 82 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHH
Confidence 345667888999999999999998863 333 477788899999999999999999998863 223 5678888
Q ss_pred HHHHHHhCCHhHHHHHHHHhhhcc
Q 008265 440 LQACVEACQFDRAFRLFRSWTLSK 463 (572)
Q Consensus 440 i~~~~~~g~~~~A~~~~~~m~~~~ 463 (572)
..++.+.|++++|...|+++.+..
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC
Confidence 899999999999999999987653
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.0001 Score=57.56 Aligned_cols=83 Identities=8% Similarity=0.041 Sum_probs=36.5
Q ss_pred ccHHHHHHHHHHHHHCCC--CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHH
Q 008265 377 KWWQMALKVKEDMLSAGV--TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454 (572)
Q Consensus 377 g~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 454 (572)
|++++|+..|++..+.+. +-+...|..+..+|...|++++|...|++..+.. +-+...+..+..++.+.|++++|..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHH
Confidence 444444444444444320 1122334444445555555555555555554432 2234444445555555555555555
Q ss_pred HHHHhh
Q 008265 455 LFRSWT 460 (572)
Q Consensus 455 ~~~~m~ 460 (572)
.|++..
T Consensus 83 ~~~~al 88 (117)
T 3k9i_A 83 LLLKII 88 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.0013 Score=54.63 Aligned_cols=103 Identities=10% Similarity=0.026 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh----CC---------CCCCHHHHHHHHHHHHccccHHHHHHHHHHHH
Q 008265 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAK----GV---------LKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390 (572)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----~~---------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 390 (572)
...+......+.+.|++++|...|......... .. -+.+...|..+..+|.+.|++++|+..+++..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345667778888999999999999988774110 00 01234578888888999999999999999888
Q ss_pred HCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 391 SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 391 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
+... .+...|..+..+|...|++++|...|++..+.
T Consensus 91 ~~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KREE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 7642 25677888888999999999999999988876
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00074 Score=67.07 Aligned_cols=136 Identities=13% Similarity=-0.003 Sum_probs=86.8
Q ss_pred hHhhhhhCChhHHHHHHHHhhhcC---CCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCC---CCCcccch
Q 008265 120 IVKSIREGRIDCVVGVLKKLNELG---VAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR---LPVKELDE 193 (572)
Q Consensus 120 ~~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~ 193 (572)
+..+...|++++|+.++++..+.. +.|+.. .+..++-.....+...|++++|+.++++.+... ..++.
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp---~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H--- 389 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQEPVFADTNL---YVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNN--- 389 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTC---
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCC---
Confidence 445678899999999998876651 223322 233333333334455789999988888765421 01111
Q ss_pred HHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCC-Cc-HHHHHHHHHHH
Q 008265 194 EFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKK-----HLSS-PN-MYICRTIIDVC 266 (572)
Q Consensus 194 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~-~~-~~~~~~ll~~~ 266 (572)
|....+++.|...|...|++++|+.++++..+ .|.. |+ ..+.+.+-.++
T Consensus 390 ------------------------p~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~ 445 (490)
T 3n71_A 390 ------------------------AQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTE 445 (490)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHH
T ss_pred ------------------------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 11126778888888888888888888876532 2322 22 34556777778
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 008265 267 GICGDYMKSRAIYEDLRSQ 285 (572)
Q Consensus 267 ~~~g~~~~a~~~~~~m~~~ 285 (572)
...|.+++|..+|..+++.
T Consensus 446 ~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 446 MELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888899999999888753
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0026 Score=51.78 Aligned_cols=115 Identities=16% Similarity=0.115 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCC--CCCC-----HHHHHHHHHHHHccccHHHHHHHHHHHHHC-----
Q 008265 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV--LKLD-----VFTYSTIVKVFADAKWWQMALKVKEDMLSA----- 392 (572)
Q Consensus 325 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----- 392 (572)
..+......+.+.|++++|+..|++..+...... -..+ ...|..+..++.+.|++++|+..+++..+.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 4456667778889999999999999988531100 0002 237888888888888888888888888764
Q ss_pred CCCC-chhhH----HHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHHHHHH
Q 008265 393 GVTP-NTITW----SSLINACANAGLVEQAMHLFEEMLQ-----AGCEPNSQCCNIL 439 (572)
Q Consensus 393 g~~p-~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~~~l 439 (572)
.+.| +...| .....++...|++++|+..|++..+ .|+.+........
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~ 148 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEV 148 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 1134 34566 7778888888888888888888764 3455554444333
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00062 Score=67.63 Aligned_cols=130 Identities=12% Similarity=0.032 Sum_probs=97.8
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHh--CCCCCC-HHHHHHHHHHHHccccHHHHHHHHHHHHHC-----CC-CCch-hhHH
Q 008265 333 ACCLAGNTVLAQEIYGEVKHLEAK--GVLKLD-VFTYSTIVKVFADAKWWQMALKVKEDMLSA-----GV-TPNT-ITWS 402 (572)
Q Consensus 333 ~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~-~p~~-~~~~ 402 (572)
.+...|++++|+.++++..+.... |.-.|+ ..+++.|...|...|++++|+.++++..+. |. .|+. .+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 455789999999999988875432 211233 347899999999999999999999887543 22 3333 5789
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH-----cCC-CCC-HHHHHHHHHHHHHhCCHhHHHHHHHHhhhc
Q 008265 403 SLINACANAGLVEQAMHLFEEMLQ-----AGC-EPN-SQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (572)
Q Consensus 403 ~li~~~~~~g~~~~a~~~~~~m~~-----~~~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 462 (572)
.|...|...|++++|+.++++..+ .|- .|+ ..+.+.+-.++...+.+++|..+|+++++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998764 231 222 345667777888999999999999998764
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00025 Score=55.31 Aligned_cols=89 Identities=15% Similarity=-0.000 Sum_probs=62.7
Q ss_pred HcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHH
Q 008265 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415 (572)
Q Consensus 336 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 415 (572)
..|++++|+..|++..+.. ..-+.+...+..+..+|...|++++|+..|++..+.... +...+..+..++...|+++
T Consensus 2 ~~g~~~~A~~~~~~al~~~--~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~ 78 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASG--LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYE 78 (117)
T ss_dssp -----CCCHHHHHHHHSSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHH
T ss_pred CCCcHHHHHHHHHHHHHcC--CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHH
Confidence 3577888888888887620 000223457788888888888999999888888876433 4667778888888889999
Q ss_pred HHHHHHHHHHHc
Q 008265 416 QAMHLFEEMLQA 427 (572)
Q Consensus 416 ~a~~~~~~m~~~ 427 (572)
+|...+++..+.
T Consensus 79 ~A~~~~~~al~~ 90 (117)
T 3k9i_A 79 QGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999888888765
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.078 Score=49.29 Aligned_cols=180 Identities=7% Similarity=0.012 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHH--HHHHhcCC-hHHHHHH
Q 008265 237 LVSALRAYDASKKHLSSPNMYICRTIIDVCGICG--DYMKSRAIYEDLRSQNVTLNIYVFNS--LMNVNAHD-LKFTLEV 311 (572)
Q Consensus 237 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~~~~~--ll~~~~~~-~~~a~~~ 311 (572)
+++++.+++.+....++ +..+|+.-...+.+.| .+++++++++.+.+.. +-|-..|+- .+-...+. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 56777777777765433 5667777666667777 4788888888887753 223334332 22233355 5788888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHc--------------CChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc-
Q 008265 312 YKNMQKLGVMADMASYNILLKACCLA--------------GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA- 376 (572)
Q Consensus 312 ~~~m~~~~~~~~~~~~~~ll~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~- 376 (572)
++.+.+..+. |...|+.....+.+. +.++++.+.+...... -+-|...|+-+-..+.+.
T Consensus 168 ~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~-----~P~d~SaW~Y~r~ll~~~~ 241 (331)
T 3dss_A 168 TDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT-----DPNDQSAWFYHRWLLGAGS 241 (331)
T ss_dssp HHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHSSS
T ss_pred HHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHhcc
Confidence 8888776654 677777666555554 3467777777777764 244666776554444443
Q ss_pred ----------ccHHHHHHHHHHHHHCCCCCchhhHHHHHHH-----HHHcCCHHHHHHHHHHHHHc
Q 008265 377 ----------KWWQMALKVKEDMLSAGVTPNTITWSSLINA-----CANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 377 ----------g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-----~~~~g~~~~a~~~~~~m~~~ 427 (572)
+.++++++.++++.+. .||. .|..+-.+ ....|..+++...+.++.+.
T Consensus 242 ~~~~~~~~~~~~l~~el~~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 242 GRCELSVEKSTVLQSELESCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred CccccchHHHHHHHHHHHHHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 4567777777777765 4543 33322111 11235555666666666654
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00033 Score=66.50 Aligned_cols=95 Identities=14% Similarity=0.088 Sum_probs=48.9
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH-
Q 008265 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN-SQCCNILLQA- 442 (572)
Q Consensus 365 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~- 442 (572)
.|..+..+|.+.|++++|+..+++..+... .+...|..+..+|...|++++|...|++..+. .|+ ...+..+...
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~ 308 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALA 308 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHH
Confidence 677788888888888888888888877632 25677888888888888888888888887654 343 3344444433
Q ss_pred HHHhCCHhHHHHHHHHhhhc
Q 008265 443 CVEACQFDRAFRLFRSWTLS 462 (572)
Q Consensus 443 ~~~~g~~~~A~~~~~~m~~~ 462 (572)
....+..+.+..+|.+|...
T Consensus 309 ~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 309 EQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHhhCC
Confidence 23345667777777777644
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0016 Score=54.00 Aligned_cols=101 Identities=17% Similarity=0.106 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHC--------CC---------CCchhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008265 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSA--------GV---------TPNTITWSSLINACANAGLVEQAMHLFEEML 425 (572)
Q Consensus 363 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--------g~---------~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 425 (572)
...+......+.+.|++++|+..|.+..+. .. .-+...|..+..+|.+.|++++|...+++..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 446777788899999999999999988764 00 1133678889999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhccc
Q 008265 426 QAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKT 464 (572)
Q Consensus 426 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 464 (572)
+.. +.+...|..+..+|...|++++|...|++..+..+
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p 128 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP 128 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCC
Confidence 874 45688899999999999999999999999876543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00067 Score=67.72 Aligned_cols=113 Identities=13% Similarity=-0.016 Sum_probs=81.4
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHH
Q 008265 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382 (572)
Q Consensus 303 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 382 (572)
|++++|...|++..+.... +...+..+..+|.+.|++++|+..+++..+. -+.+...|..+..+|.+.|++++|
T Consensus 20 g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-----~p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 20 KDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIEL-----DKKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-----CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 5677777777777665332 5778888888999999999999999988873 134567888888899999999999
Q ss_pred HHHHHHHHHCCCCCchhhHHHHHHH--HHHcCCHHHHHHHHH
Q 008265 383 LKVKEDMLSAGVTPNTITWSSLINA--CANAGLVEQAMHLFE 422 (572)
Q Consensus 383 ~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~a~~~~~ 422 (572)
++.|++..+.... +...+..+..+ +.+.|++++|.+.++
T Consensus 94 ~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999988776322 33455555555 777888899988887
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0032 Score=51.25 Aligned_cols=99 Identities=11% Similarity=-0.015 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCc-------------hhhHHHHHHHHHHcCCHHHHHHHHHHHHHc--
Q 008265 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN-------------TITWSSLINACANAGLVEQAMHLFEEMLQA-- 427 (572)
Q Consensus 363 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-- 427 (572)
...+......+.+.|++++|+..|++..+. .|+ ...|+.+..++.+.|++++|+..+++..+.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 345566677888999999999999999876 333 228999999999999999999999999875
Q ss_pred ---CCCCC-HHHH----HHHHHHHHHhCCHhHHHHHHHHhhhcc
Q 008265 428 ---GCEPN-SQCC----NILLQACVEACQFDRAFRLFRSWTLSK 463 (572)
Q Consensus 428 ---~~~p~-~~~~----~~li~~~~~~g~~~~A~~~~~~m~~~~ 463 (572)
.+.|+ ...| .....++...|++++|+..|++..+..
T Consensus 89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 22454 4677 888899999999999999999987643
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.1 Score=48.45 Aligned_cols=222 Identities=8% Similarity=0.007 Sum_probs=149.7
Q ss_pred HhcCCH-HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHH--H
Q 008265 232 GKKRDL-VSALRAYDASKKHLSSPNMYICRTIIDVCGICGD----------YMKSRAIYEDLRSQNVTLNIYVFNSL--M 298 (572)
Q Consensus 232 ~~~g~~-~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~----------~~~a~~~~~~m~~~g~~p~~~~~~~l--l 298 (572)
.+.|.+ ++|+++++.+....+. +...|+.--..+...|. +++++.+++.+..... -+...|+-- +
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P-Kny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 345554 4788888888875432 34455543333333332 6889999999887632 234444432 2
Q ss_pred HHhcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 008265 299 NVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN-TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD 375 (572)
Q Consensus 299 ~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 375 (572)
-...+ .+++++.+++.+.+...+ |...|+.-.-.+...|. ++++.+.++.+.+. -+-|...|+.....+.+
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~-----~p~N~SAW~~R~~ll~~ 191 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITR-----NFSNYSSWHYRSCLLPQ 191 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-----CSCCHHHHHHHHHHHHH
T ss_pred HhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHH
Confidence 22234 589999999999987755 88888887778888888 58999999998874 25577788777666655
Q ss_pred c--------------ccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHc-----------CCHHHHHHHHHHHHHcCCC
Q 008265 376 A--------------KWWQMALKVKEDMLSAGVTPNTITWSSLINACANA-----------GLVEQAMHLFEEMLQAGCE 430 (572)
Q Consensus 376 ~--------------g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~~~~ 430 (572)
. +.++++++.+......... |...|+.+-..+.+. +.++++++.++++.+. .
T Consensus 192 l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~ 268 (331)
T 3dss_A 192 LHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--E 268 (331)
T ss_dssp HSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--C
T ss_pred hhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--C
Confidence 4 5689999999998877443 677787665555554 4578999999999886 4
Q ss_pred CCH-HHHHHHHH---HHHHhCCHhHHHHHHHHhhhccc
Q 008265 431 PNS-QCCNILLQ---ACVEACQFDRAFRLFRSWTLSKT 464 (572)
Q Consensus 431 p~~-~~~~~li~---~~~~~g~~~~A~~~~~~m~~~~~ 464 (572)
||. ..+..++. +....|..+++...+.++.+-++
T Consensus 269 pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 269 PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp TTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred cccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCc
Confidence 543 33322222 22235677888888988876543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00048 Score=52.75 Aligned_cols=91 Identities=13% Similarity=0.053 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-------HHH
Q 008265 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN-------SQC 435 (572)
Q Consensus 363 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-------~~~ 435 (572)
...+..+...+.+.|++++|++.|++..+... .+...|..+..++.+.|++++|.+.+++..+. .|+ ...
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHHH
Confidence 44556666666677777777777776665522 24556666677777777777777777777654 333 334
Q ss_pred HHHHHHHHHHhCCHhHHHHHH
Q 008265 436 CNILLQACVEACQFDRAFRLF 456 (572)
Q Consensus 436 ~~~li~~~~~~g~~~~A~~~~ 456 (572)
+..+..++...|+.+.|.+.+
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHhHhhhHhHH
Confidence 444555555555555544443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0079 Score=59.60 Aligned_cols=145 Identities=14% Similarity=-0.003 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008265 256 MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335 (572)
Q Consensus 256 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 335 (572)
...|..+-..|.+.|++++|...|++..+.. |+...+ ..+... ++.. .....|..+..+|.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~---------~~~~~~----~~~~----~~~~~~~nla~~~~ 328 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGL---------SEKESK----ASES----FLLAAFLNLAMCYL 328 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSC---------CHHHHH----HHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccC---------ChHHHH----HHHH----HHHHHHHHHHHHHH
Confidence 3455566666667777777777776665431 110000 000000 0100 02355667777788
Q ss_pred HcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHH
Q 008265 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415 (572)
Q Consensus 336 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 415 (572)
+.|++++|+..++++.++. +.+...|..+..+|...|++++|+..|++..+.... +...+..+..++.+.++.+
T Consensus 329 ~~g~~~~A~~~~~~al~~~-----p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~ 402 (457)
T 1kt0_A 329 KLREYTKAVECCDKALGLD-----SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHN 402 (457)
T ss_dssp HTTCHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-----CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHH
Confidence 8888888888888887641 345667777888888888888888888888776322 4466777777777777777
Q ss_pred HHHH-HHHHHH
Q 008265 416 QAMH-LFEEML 425 (572)
Q Consensus 416 ~a~~-~~~~m~ 425 (572)
++.. ++..|.
T Consensus 403 ~a~~~~~~~~f 413 (457)
T 1kt0_A 403 ERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHHH
Confidence 6653 444443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0017 Score=61.56 Aligned_cols=115 Identities=15% Similarity=-0.026 Sum_probs=91.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHH
Q 008265 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (572)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 402 (572)
....+..+...+.+.|++++|...|.+... ..|+... +...++.+++...+. ...|.
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~------~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~ 234 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIA------YMGDDFM-------FQLYGKYQDMALAVK----------NPCHL 234 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHH------HSCHHHH-------HTCCHHHHHHHHHHH----------THHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH------Hhccchh-------hhhcccHHHHHHHHH----------HHHHH
Confidence 466778888888899999999999999886 3555432 334455555543331 23688
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 403 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
.+..+|.+.|++++|...+++..+.. +.+...|..+..+|...|++++|...|++..+
T Consensus 235 nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 235 NIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 89999999999999999999998864 44788999999999999999999999998765
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0092 Score=43.28 Aligned_cols=79 Identities=16% Similarity=0.197 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008265 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443 (572)
Q Consensus 364 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 443 (572)
..+..+...+...|++++|+..+++..+... .+...+..+..++.+.|++++|...+++..+.. +.+...+..+..++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 3444555555555566666655555554421 134445555555666666666666666655542 22344444444443
Q ss_pred H
Q 008265 444 V 444 (572)
Q Consensus 444 ~ 444 (572)
.
T Consensus 88 ~ 88 (91)
T 1na3_A 88 Q 88 (91)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=96.99 E-value=0.012 Score=56.26 Aligned_cols=90 Identities=7% Similarity=-0.092 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHH
Q 008265 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (572)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 403 (572)
...|..+..+|.+.|++++|+..+++..+. -+.+...|..+..+|...|++++|++.|++..+.... +...+..
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~-----~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~ 346 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEI-----DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAE 346 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHh-----CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 445666666777777777777777777652 1234556666777777777777777777776666322 4455566
Q ss_pred HHHHHHHcCCHHHHHH
Q 008265 404 LINACANAGLVEQAMH 419 (572)
Q Consensus 404 li~~~~~~g~~~~a~~ 419 (572)
+..++...++.+++.+
T Consensus 347 l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 347 LLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666666655543
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.95 E-value=0.03 Score=44.71 Aligned_cols=110 Identities=15% Similarity=-0.009 Sum_probs=51.6
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cccH
Q 008265 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD----AKWW 379 (572)
Q Consensus 304 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~ 379 (572)
+.++|+..|.+..+.| .++.. +-..|...+..++|.+.|++..+. -+...+..|-..|.. .+++
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~-------g~~~a~~~Lg~~y~~G~g~~~d~ 77 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL-------NSGNGCRFLGDFYENGKYVKKDL 77 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHCSSSCCCH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC-------CCHHHHHHHHHHHHcCCCCCccH
Confidence 3444555555554444 11222 333444444455555555555431 234444444444444 4555
Q ss_pred HHHHHHHHHHHHCCCCCchhhHHHHHHHHHH----cCCHHHHHHHHHHHHHcC
Q 008265 380 QMALKVKEDMLSAGVTPNTITWSSLINACAN----AGLVEQAMHLFEEMLQAG 428 (572)
Q Consensus 380 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~ 428 (572)
++|++.|++..+.| +...+..|-..|.. .++.++|.+.|++..+.|
T Consensus 78 ~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 78 RKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 55555555555442 33344444444544 455555555555555444
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0064 Score=46.78 Aligned_cols=79 Identities=18% Similarity=0.130 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHH
Q 008265 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421 (572)
Q Consensus 342 ~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 421 (572)
++...|++..+. -+.+...+..+...|...|++++|+..|++..+.... +...|..+..+|...|++++|...|
T Consensus 3 ~a~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~ 76 (115)
T 2kat_A 3 AITERLEAMLAQ-----GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAW 76 (115)
T ss_dssp CHHHHHHHHHTT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 456667666652 1345667777777888888888888888877765322 4566777777788888888888887
Q ss_pred HHHHH
Q 008265 422 EEMLQ 426 (572)
Q Consensus 422 ~~m~~ 426 (572)
++..+
T Consensus 77 ~~al~ 81 (115)
T 2kat_A 77 ESGLA 81 (115)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77765
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0091 Score=45.88 Aligned_cols=80 Identities=15% Similarity=-0.060 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHH
Q 008265 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK 386 (572)
Q Consensus 307 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 386 (572)
.++..|++..+... .+...+..+...|...|++++|...|++..+. .+.+...|..+..+|...|++++|...|
T Consensus 3 ~a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~ 76 (115)
T 2kat_A 3 AITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDF-----DPTYSVAWKWLGKTLQGQGDRAGARQAW 76 (115)
T ss_dssp CHHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-----CCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 46677777776543 26778888888999999999999999998874 1345678888899999999999999999
Q ss_pred HHHHHC
Q 008265 387 EDMLSA 392 (572)
Q Consensus 387 ~~m~~~ 392 (572)
++..+.
T Consensus 77 ~~al~~ 82 (115)
T 2kat_A 77 ESGLAA 82 (115)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988754
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0033 Score=47.86 Aligned_cols=88 Identities=14% Similarity=0.024 Sum_probs=64.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCc-----
Q 008265 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN----- 397 (572)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----- 397 (572)
+...+..+...+...|++++|...|++..+. .+.+...|..+..++.+.|++++|++.+++..+. .|+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 75 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA-----QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVA 75 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHH
Confidence 4556777888889999999999999998874 2446778888899999999999999999998876 444
Q ss_pred --hhhHHHHHHHHHHcCCHHHH
Q 008265 398 --TITWSSLINACANAGLVEQA 417 (572)
Q Consensus 398 --~~~~~~li~~~~~~g~~~~a 417 (572)
...+..+..++...|+.+.|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~a 97 (111)
T 2l6j_A 76 IRSKLQYRLELAQGAVGSVQIP 97 (111)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHHHHHhHhhh
Confidence 23344444444444444333
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.18 Score=51.26 Aligned_cols=173 Identities=12% Similarity=0.063 Sum_probs=124.1
Q ss_pred HcCC-hHHHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcccc----------HHHHHHHHHHHHHCCCCCchhhHHH
Q 008265 336 LAGN-TVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFADAKW----------WQMALKVKEDMLSAGVTPNTITWSS 403 (572)
Q Consensus 336 ~~g~-~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~g~~p~~~~~~~ 403 (572)
+.|+ -++|.+.++++... .| +..+|+.--..+.+.|+ ++++++.++.+.+...+ +...|+.
T Consensus 40 ~~~~~~eeal~~~~~~l~~------nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~h 112 (567)
T 1dce_A 40 QAGELDESVLELTSQILGA------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHH 112 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH------CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 3444 45678888888873 34 34567776666666666 88999999998877544 6678888
Q ss_pred HHHHHHHcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC-CHhHHHHHHHHhhhcccccccccccCCchHHHH
Q 008265 404 LINACANAG--LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC-QFDRAFRLFRSWTLSKTQVALGEDYDGNTDRIS 480 (572)
Q Consensus 404 li~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 480 (572)
-...+.+.| +++++++.++++.+.. .-+...|+.-..++.+.| .++++.+.++++.+.++
T Consensus 113 R~w~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p---------------- 175 (567)
T 1dce_A 113 RCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF---------------- 175 (567)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC----------------
T ss_pred HHHHHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC----------------
Confidence 888888888 7799999999998875 457888888888888888 78888888888765432
Q ss_pred hhhhhccccccCCCCcccCCccchhhhhcCCCCCHHHHHHHHHHHhh----------------cHHHHHHHHHHHHhCCC
Q 008265 481 NMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT----------------DYYRVKALMNEMRTVGL 544 (572)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~a~~~----------------~~~~a~~~~~~m~~~g~ 544 (572)
-|...|+-.-..+.+ ..+++.+.+..... +
T Consensus 176 --------------------------------~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~--~ 221 (567)
T 1dce_A 176 --------------------------------SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF--T 221 (567)
T ss_dssp --------------------------------CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHH--H
T ss_pred --------------------------------CCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHh--h
Confidence 244455444333221 24788888888776 4
Q ss_pred CC-CHHHHHHHHHHHHccCCccc
Q 008265 545 SP-NHISWTILIDACGGSGNVEG 566 (572)
Q Consensus 545 ~p-~~~~~~~l~~~~~~~g~~~~ 566 (572)
.| |...|.-+-..+.+.|..++
T Consensus 222 ~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 222 DPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCSHHHHHHHHHHSCCCCCSC
T ss_pred CCCCccHHHHHHHHHhcCCCccc
Confidence 46 56788888888888877555
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.89 E-value=0.014 Score=42.26 Aligned_cols=81 Identities=16% Similarity=0.081 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHH
Q 008265 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (572)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 403 (572)
...+..+...+...|++++|...|++..+. .+.+...+..+...+.+.|++++|+..+++..+.... +...+..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~ 82 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQN 82 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHH
Confidence 456777788888999999999999998874 1346678888888999999999999999998876322 4455555
Q ss_pred HHHHHHH
Q 008265 404 LINACAN 410 (572)
Q Consensus 404 li~~~~~ 410 (572)
+..++.+
T Consensus 83 l~~~~~~ 89 (91)
T 1na3_A 83 LGNAKQK 89 (91)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555544
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.093 Score=53.29 Aligned_cols=151 Identities=9% Similarity=0.011 Sum_probs=88.8
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008265 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN----------TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374 (572)
Q Consensus 305 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 374 (572)
.++|++.++++.+.+.. +...|+.--.++.+.|+ ++++.+.++.+.+. -+-+..+|+.-...+.
T Consensus 45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~-----~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV-----NPKSYGTWHHRCWLLS 118 (567)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHH
Confidence 34555555555554332 33444444444444444 66677777766653 1334556666666666
Q ss_pred ccc--cHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh-----
Q 008265 375 DAK--WWQMALKVKEDMLSAGVTPNTITWSSLINACANAG-LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA----- 446 (572)
Q Consensus 375 ~~g--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~----- 446 (572)
+.+ +++++++.++++.+...+ +...|+.-...+.+.| ..+++.+.++++.+.. .-|...|+.....+.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCC
T ss_pred HcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccc
Confidence 666 567777777777766443 5666766666666666 6777777777766553 33566666665555553
Q ss_pred ---------CCHhHHHHHHHHhhhcc
Q 008265 447 ---------CQFDRAFRLFRSWTLSK 463 (572)
Q Consensus 447 ---------g~~~~A~~~~~~m~~~~ 463 (572)
+.++++.+.+++.....
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~~ 222 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFTD 222 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHHC
T ss_pred ccccccccHHHHHHHHHHHHHHHhhC
Confidence 34567777776665433
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.73 E-value=0.061 Score=42.89 Aligned_cols=111 Identities=14% Similarity=-0.032 Sum_probs=63.4
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChHHHHHH
Q 008265 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL----AGNTVLAQEI 346 (572)
Q Consensus 271 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~ 346 (572)
++++|++.|++..+.| .++.. -..+....+..++|...|++..+.| +...+..+-..|.. .+++++|...
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 4555566665555554 22222 1111111134555666666665543 45556666666666 6677777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cccHHHHHHHHHHHHHCCC
Q 008265 347 YGEVKHLEAKGVLKLDVFTYSTIVKVFAD----AKWWQMALKVKEDMLSAGV 394 (572)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~ 394 (572)
|+...+ . -+...+..|...|.. .+++++|.+.|++..+.|.
T Consensus 84 ~~~Aa~---~----g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 84 YSKACG---L----NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHH---T----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHc---C----CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 777665 1 255566666666666 6777777777777776653
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0085 Score=48.64 Aligned_cols=98 Identities=13% Similarity=0.002 Sum_probs=60.3
Q ss_pred HcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcccc----------HHHHHHHHHHHHHCCCCCchhhHHHHH
Q 008265 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW----------WQMALKVKEDMLSAGVTPNTITWSSLI 405 (572)
Q Consensus 336 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~g~~p~~~~~~~li 405 (572)
+.+.+++|.+.++...+. -+.+...|+.+..++...++ +++|+..|++..+.... +...|..+-
T Consensus 14 r~~~feeA~~~~~~Ai~l-----~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG 87 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKS-----NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIG 87 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHH
Confidence 445566677777666653 13355566666666665554 34777777777665322 445666677
Q ss_pred HHHHHc-----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008265 406 NACANA-----------GLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441 (572)
Q Consensus 406 ~~~~~~-----------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 441 (572)
.+|... |++++|.+.|++..+. .|+...|...+.
T Consensus 88 ~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 88 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 777665 3788888888888775 566555544433
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.68 E-value=0.03 Score=45.42 Aligned_cols=110 Identities=10% Similarity=0.032 Sum_probs=76.7
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008265 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT----------VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVF 373 (572)
Q Consensus 304 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~----------~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 373 (572)
.+++|...++...+.... +...|..+..++...+++ ++|+..|++..++. +-+...|..+..+|
T Consensus 17 ~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-----P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-----PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-----cCcHHHHHHHHHHH
Confidence 356677777777665543 677777777777776654 58999999988841 33556888888888
Q ss_pred Hccc-----------cHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 374 ADAK-----------WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 374 ~~~g-----------~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
...| ++++|++.|++..+. .|+...|...+.. .++|-+++-++...
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~------~~ka~el~~~~~~~ 147 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEM------TAKAPQLHAEAYKQ 147 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH------HHTHHHHHHHHHHS
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHH------HHhCHhccCccccc
Confidence 8764 899999999999886 6776666555443 34555555555543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.67 E-value=0.011 Score=44.08 Aligned_cols=63 Identities=14% Similarity=0.131 Sum_probs=35.3
Q ss_pred CHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008265 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425 (572)
Q Consensus 362 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 425 (572)
+...+..+...|.+.|++++|++.|++..+.... +...|..+..+|...|++++|.+.|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555555666666666666666665554221 33455555666666666666666665554
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.54 E-value=0.015 Score=43.42 Aligned_cols=64 Identities=8% Similarity=-0.045 Sum_probs=48.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008265 220 ADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (572)
Q Consensus 220 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 284 (572)
+...+..+...|.+.|++++|...|+...+.... +...|..+..+|.+.|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3466777788888888888888888888776432 455777888888888888888888887764
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.29 E-value=0.1 Score=55.90 Aligned_cols=153 Identities=13% Similarity=0.071 Sum_probs=95.1
Q ss_pred HhcCCHHHHHH-HHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHH
Q 008265 232 GKKRDLVSALR-AYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLE 310 (572)
Q Consensus 232 ~~~g~~~~a~~-~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~a~~ 310 (572)
...+++++|.+ ++..+ ++......++..+.+.|.+++|+++.++- ....-+....|++++|++
T Consensus 610 ~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~----------~~~f~~~l~~~~~~~A~~ 673 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQ----------DQKFELALKVGQLTLARD 673 (814)
T ss_dssp HHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCH----------HHHHHHHHHHTCHHHHHH
T ss_pred HHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCc----------chheehhhhcCCHHHHHH
Confidence 44677777766 44221 10122366666777777777777655321 111223345578888877
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHH
Q 008265 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390 (572)
Q Consensus 311 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 390 (572)
+.+.+ .+...|..+...+.+.|+++.|++.|..+.. |..+...|...|+.+...++-+...
T Consensus 674 ~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d-------------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 674 LLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD-------------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-------------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC-------------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 75443 3678899999999999999999999987753 2234444555677777666666665
Q ss_pred HCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008265 391 SAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425 (572)
Q Consensus 391 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 425 (572)
..|. ++....+|.+.|++++|.+++.++.
T Consensus 735 ~~~~------~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 735 TTGK------FNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HTTC------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HcCc------hHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 5432 3444555666777777777776653
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.028 Score=54.74 Aligned_cols=89 Identities=11% Similarity=0.050 Sum_probs=49.2
Q ss_pred cCChHHHHHHHHHHHHHHHh--CCCCCC-HHHHHHHHHHHHccccHHHHHHHHHHHHHC-----C-CCCch-hhHHHHHH
Q 008265 337 AGNTVLAQEIYGEVKHLEAK--GVLKLD-VFTYSTIVKVFADAKWWQMALKVKEDMLSA-----G-VTPNT-ITWSSLIN 406 (572)
Q Consensus 337 ~g~~~~a~~~~~~~~~~~~~--~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g-~~p~~-~~~~~li~ 406 (572)
.|++++|+.++++..+.... |.-.|+ ..+++.|...|...|++++|+.++++..+- | -.|+. .+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46677777777666654321 111122 235666666666667777666666665422 1 12222 34566666
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 008265 407 ACANAGLVEQAMHLFEEML 425 (572)
Q Consensus 407 ~~~~~g~~~~a~~~~~~m~ 425 (572)
.|...|++++|+.++++..
T Consensus 391 ~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 6666666666666666554
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.017 Score=56.31 Aligned_cols=102 Identities=9% Similarity=0.003 Sum_probs=70.4
Q ss_pred HHHHhHhhcCChhHHHHHHHHHHhhc---CChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhc---CCCCcch
Q 008265 76 DMASKLAKDGRLEEFAMIVESVVVSE---GNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL---GVAPLEL 149 (572)
Q Consensus 76 ~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~ 149 (572)
..+..+...|++++|++++++.++.. ..|+ +.....+++++...|...|++++|+.++++.... -+.|+..
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~---h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp 368 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDI---NIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHP 368 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTT---SHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCcc---chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCCh
Confidence 34566778899999999999998653 2333 3335778999999999999999999999887764 1223221
Q ss_pred hhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 008265 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEE 183 (572)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 183 (572)
.+...+.+....+...|++++|+.++++.++
T Consensus 369 ---~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 369 ---VRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp ---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 2333333333344557888888888776543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.18 E-value=0.31 Score=45.60 Aligned_cols=47 Identities=6% Similarity=-0.080 Sum_probs=29.8
Q ss_pred hhhHHHHHHHHHHhh--hhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHH
Q 008265 153 SGFKLLKNECQRLLD--SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLC 201 (572)
Q Consensus 153 ~~~~~l~~~~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~ 201 (572)
..|..++.+...+.+ .....+|+.+|++..+. .|.....|..+.-+|
T Consensus 195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~ 243 (372)
T 3ly7_A 195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVD 243 (372)
T ss_dssp GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 377777776554432 45678999999998875 455555555443333
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.16 E-value=0.2 Score=46.97 Aligned_cols=72 Identities=15% Similarity=0.098 Sum_probs=41.5
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhH
Q 008265 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401 (572)
Q Consensus 322 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 401 (572)
.+..++..+...+...|++++|...++++.. +.|+...|..+...+.-.|++++|.+.+.+.... .|...+|
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~------Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~ 346 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGID------LEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTL 346 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH------HCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh------cCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChH
Confidence 3455555555555555666666666666665 2355555656666666666666666666665554 3444443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.012 Score=57.35 Aligned_cols=95 Identities=8% Similarity=-0.094 Sum_probs=64.8
Q ss_pred hcCChhHHHHHHHHHHhhc---CChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhc---CCCCcchhhhhhhH
Q 008265 83 KDGRLEEFAMIVESVVVSE---GNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL---GVAPLELFDGSGFK 156 (572)
Q Consensus 83 ~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~~~~ 156 (572)
..|++++|+.++++.++.. ..|+ +.....+++++...|...|++++|+.++++.... -+-|+.. .+..
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~---Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp---~~a~ 383 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDS---NVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSL---NVAS 383 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTT---SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCH---HHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChh---chHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCCh---HHHH
Confidence 4578999999999987643 2333 3335778999999999999999999999888764 1222211 1333
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 008265 157 LLKNECQRLLDSGEVEMFVGLMEVLEE 183 (572)
Q Consensus 157 ~l~~~~~~~~~~g~~~~a~~~~~~~~~ 183 (572)
.+.+....+...|++++|+.++++.++
T Consensus 384 ~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 384 MWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 333333344557888888888876554
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.057 Score=52.65 Aligned_cols=101 Identities=8% Similarity=0.012 Sum_probs=64.9
Q ss_pred hhhHhhhhhCChhHHHHHHHHhhhc---CCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCC---CCCccc
Q 008265 118 SGIVKSIREGRIDCVVGVLKKLNEL---GVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR---LPVKEL 191 (572)
Q Consensus 118 ~~~~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~ 191 (572)
..+..+.+.|++++|+.++++..+. -+.|+......+++.+.. .+...|++++|+.++++.+... ..+..
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~---~y~~~g~~~eA~~~~~~~L~i~~~~lg~~H- 367 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMD---ACINLGLLEEALFYGTRTMEPYRIFFPGSH- 367 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHH---HHHHHTCHHHHHHHHHHHHHHHHHHSCSSC-
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHH---HHHhhccHHHHHHHHHHHHHhHHHHcCCCC-
Confidence 3455677889999999999988765 233443322233444443 4455799999999988765421 11111
Q ss_pred chHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008265 192 DEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASK 248 (572)
Q Consensus 192 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 248 (572)
|....+++.|...|...|++++|+.++++..
T Consensus 368 --------------------------p~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 368 --------------------------PVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --------------------------hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 1112677788888888888888888887653
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.026 Score=41.68 Aligned_cols=55 Identities=15% Similarity=0.155 Sum_probs=29.1
Q ss_pred HHHccccHHHHHHHHHHHHHCCCCCchh-hHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 372 VFADAKWWQMALKVKEDMLSAGVTPNTI-TWSSLINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 372 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
.+.+.|++++|++.+++..+.... +.. .|..+..+|...|++++|.+.|++..+.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 444555555555555555544211 233 4555555555566666666666655554
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.80 E-value=0.55 Score=50.10 Aligned_cols=76 Identities=9% Similarity=-0.073 Sum_probs=50.9
Q ss_pred HHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHH
Q 008265 195 FRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMK 274 (572)
Q Consensus 195 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 274 (572)
..++..+...|..+.|+++.+.- ..-...+...|+++.|.++.+.+ .+...|..+...+.+.|+++.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~-------~~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~ 699 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQ-------DQKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKL 699 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCH-------HHHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhCCChHHheecCCCc-------chheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHH
Confidence 55666666777777777665321 11133456678888888775443 356788888888888888888
Q ss_pred HHHHHHHHH
Q 008265 275 SRAIYEDLR 283 (572)
Q Consensus 275 a~~~~~~m~ 283 (572)
|.+.|..+.
T Consensus 700 A~~~y~~~~ 708 (814)
T 3mkq_A 700 AIEAFTNAH 708 (814)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHcc
Confidence 888888765
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.43 Score=39.30 Aligned_cols=125 Identities=14% Similarity=0.130 Sum_probs=73.6
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHH
Q 008265 301 NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380 (572)
Q Consensus 301 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 380 (572)
..|+++.|.++.+.+ -+...|..|.......|+++-|++.|..... +..+.--|.-.|+.+
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-------------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS-------------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-------------HHHHHHHHHHHTCHH
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-------------HHHHHHHHHHhCCHH
Confidence 347777777776655 2777777777777777777777777766542 223333444556666
Q ss_pred HHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHh
Q 008265 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (572)
Q Consensus 381 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (572)
...++-+.....| -++....++.-.|+++++.++|.+..+ -|... -.....|-.+.|.++.+.+
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---LPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---HHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---hHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 6665555555443 245556666667777777777744321 11111 1112245667777776655
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.06 E-value=0.16 Score=37.21 Aligned_cols=58 Identities=16% Similarity=0.125 Sum_probs=44.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHccccHHHHHHHHHHHHHC
Q 008265 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF-TYSTIVKVFADAKWWQMALKVKEDMLSA 392 (572)
Q Consensus 330 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~ 392 (572)
....+.+.|++++|...|++..+. .+.+.. .+..+..+|...|++++|++.|++..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT-----EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH-----CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH-----CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 345667788888888888888763 133556 7788888888888888888888888776
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.43 Score=39.26 Aligned_cols=98 Identities=9% Similarity=0.009 Sum_probs=64.3
Q ss_pred hhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008265 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDAS 247 (572)
Q Consensus 168 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 247 (572)
.|+++.|.++.+.+ ++...|..|.+.....|+++-|.+.|..... +..+.-.|.-.|+.+.-.++-+..
T Consensus 18 lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----~~~L~~Ly~~tg~~e~L~kla~iA 86 (177)
T 3mkq_B 18 YGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQHS----FDKLSFLYLVTGDVNKLSKMQNIA 86 (177)
T ss_dssp TTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----HHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 79999999988766 2345688888888888888888888776643 444555555566666655554444
Q ss_pred HhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008265 248 KKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282 (572)
Q Consensus 248 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m 282 (572)
...| -++.....+.-.|+++++.++|.+.
T Consensus 87 ~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 87 QTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 3332 2344455556667777777776443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.74 E-value=1.1 Score=34.69 Aligned_cols=138 Identities=12% Similarity=-0.018 Sum_probs=86.0
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHH
Q 008265 234 KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYK 313 (572)
Q Consensus 234 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~a~~~~~ 313 (572)
.|.+++..++..+.... .+..-||.+|.-....-+-+-..++++..-+- .|. ..++++.....-+-
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi--------s~C~NlKrVi~C~~ 85 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL--------DKCQNLKSVVECGV 85 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG--------GGCSCTHHHHHHHH
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc--------HhhhcHHHHHHHHH
Confidence 47777777777776654 35566677776666666666666666655432 110 12344544444443
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCC
Q 008265 314 NMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393 (572)
Q Consensus 314 ~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 393 (572)
.+- .+...+...++.+...|+.+.-.+++.++.. . .+|+....-.+..+|.+.|+..++.+++.+.-+.|
T Consensus 86 ~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~---n--~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 86 INN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK---N--NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC-------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred Hhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc---c--CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 332 2455666677777777777777777776422 1 35667777777777777787777777777777777
Q ss_pred CC
Q 008265 394 VT 395 (572)
Q Consensus 394 ~~ 395 (572)
++
T Consensus 156 ~k 157 (172)
T 1wy6_A 156 EK 157 (172)
T ss_dssp CH
T ss_pred hH
Confidence 64
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=94.60 E-value=0.58 Score=33.99 Aligned_cols=66 Identities=12% Similarity=-0.011 Sum_probs=42.5
Q ss_pred CCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHC
Q 008265 322 ADMASYNILLKACCLAGN---TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (572)
Q Consensus 322 ~~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 392 (572)
.+...+..+..++...++ .++|..++++..+.. +-+......+...+.+.|++++|+..|+++.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-----p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-----PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-----cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345556666666654443 577777777777631 334556666667777777777777777777765
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.39 E-value=0.26 Score=39.44 Aligned_cols=67 Identities=15% Similarity=0.065 Sum_probs=45.0
Q ss_pred CCCHHHHHHHHHHHHccc---cHHHHHHHHHHHHHCCCCC--chhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 360 KLDVFTYSTIVKVFADAK---WWQMALKVKEDMLSAGVTP--NTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 360 ~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
.++..+...+..++++.+ ++++++.+|++..+.. .| ....+-.+.-+|.+.|++++|.++++.+.+.
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 356666666667777766 5667777777777653 23 3445555666777777777777777777765
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.19 E-value=0.36 Score=35.97 Aligned_cols=64 Identities=9% Similarity=-0.038 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008265 222 ILFCNFVREFGKKRDLVSALRAYDASKKHL------SSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (572)
Q Consensus 222 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 285 (572)
..+..|...+.+.|+++.|...|+...+.- ..+....+..+..+|.+.|+++.|...+++..+.
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 445678888888999999999988776531 2245678889999999999999999999998865
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=93.86 E-value=0.58 Score=42.02 Aligned_cols=79 Identities=9% Similarity=0.001 Sum_probs=60.4
Q ss_pred hhHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCC--CCHH
Q 008265 221 DILFCNFVREFGK-----KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC-GDYMKSRAIYEDLRSQNVT--LNIY 292 (572)
Q Consensus 221 ~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-g~~~~a~~~~~~m~~~g~~--p~~~ 292 (572)
+..|..+...|.+ .|+.++|.+.|++..+.+..-+..++......++.. |+.+++.+.+++....... |+..
T Consensus 199 GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~ 278 (301)
T 3u64_A 199 GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNK 278 (301)
T ss_dssp HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCH
T ss_pred CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChh
Confidence 3567777788888 599999999999998865432467777788888884 9999999999999988666 6655
Q ss_pred HHHHHHH
Q 008265 293 VFNSLMN 299 (572)
Q Consensus 293 ~~~~ll~ 299 (572)
..+.+-+
T Consensus 279 lan~~~q 285 (301)
T 3u64_A 279 LLVILSQ 285 (301)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.61 E-value=0.95 Score=36.23 Aligned_cols=84 Identities=14% Similarity=0.100 Sum_probs=47.2
Q ss_pred cHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHhCCHhHH
Q 008265 378 WWQMALKVKEDMLSAGVTPNTITWSSLINACANAG---LVEQAMHLFEEMLQAGCEP--NSQCCNILLQACVEACQFDRA 452 (572)
Q Consensus 378 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A 452 (572)
.+..+.+-|.+..+.|. ++..+...+..++++.+ +++++..+|++..+.+ .| +...+-.+.-+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 34455555555555443 45555555666666665 4556666666666553 23 233444444556666666666
Q ss_pred HHHHHHhhhcc
Q 008265 453 FRLFRSWTLSK 463 (572)
Q Consensus 453 ~~~~~~m~~~~ 463 (572)
.+.++.+.+..
T Consensus 91 ~~y~~~lL~ie 101 (152)
T 1pc2_A 91 LKYVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcC
Confidence 66666665544
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=93.55 E-value=0.76 Score=34.14 Aligned_cols=70 Identities=10% Similarity=-0.054 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHC
Q 008265 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV--LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (572)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 392 (572)
+..-+..+...+.+.|+++.|...|+...+...... -.+...++..|..+|.+.|+++.|+..+++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 344455566666666666666666666655322110 0123345555555555555555555555555543
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=93.27 E-value=1.2 Score=34.43 Aligned_cols=84 Identities=7% Similarity=-0.061 Sum_probs=64.6
Q ss_pred CCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008265 204 KPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283 (572)
Q Consensus 204 ~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 283 (572)
.|+.......+-.+-.....+...+.....+|+-+.-.+++..+.. +-+|++...-.+..+|.+.|+..+|.+++.+.-
T Consensus 74 C~NlKrVi~C~~~~n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC 152 (172)
T 1wy6_A 74 CQNLKSVVECGVINNTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEAC 152 (172)
T ss_dssp CSCTHHHHHHHHHTTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhcHHHHHHHHHHhcchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 3445555555555555556778888999999999999999988644 345778888889999999999999999999999
Q ss_pred hCCCC
Q 008265 284 SQNVT 288 (572)
Q Consensus 284 ~~g~~ 288 (572)
++|++
T Consensus 153 ~kG~k 157 (172)
T 1wy6_A 153 KKGEK 157 (172)
T ss_dssp HTTCH
T ss_pred HhhhH
Confidence 98863
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=93.16 E-value=0.66 Score=33.67 Aligned_cols=66 Identities=11% Similarity=-0.015 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHHcccc---HHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 361 LDVFTYSTIVKVFADAKW---WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 361 ~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
.|...+..+..++...++ .++|..++++..+.... +......+...+.+.|++++|...|+.+.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 455555555555543333 56677777666665322 4455555666666677777777777776654
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=92.93 E-value=1.4 Score=34.83 Aligned_cols=112 Identities=13% Similarity=0.058 Sum_probs=70.8
Q ss_pred CHHHHHHHHHHHHHcCCh------HHHHHHHHHHHHHHHhCCCCCCHH-HHHHHHH------HHHccccHHHHHHHHHHH
Q 008265 323 DMASYNILLKACCLAGNT------VLAQEIYGEVKHLEAKGVLKLDVF-TYSTIVK------VFADAKWWQMALKVKEDM 389 (572)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~------~~a~~~~~~~~~~~~~~~~~~~~~-~~~~li~------~~~~~g~~~~a~~~~~~m 389 (572)
|..+|-..+...-+.|+. +...++|+..... ++|+.. .|...|. .+...+++++|.++|+.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-----~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-----LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMA 86 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-----SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-----CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 566666666666666777 6777788777653 455421 1111111 123347888899999988
Q ss_pred HHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008265 390 LSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441 (572)
Q Consensus 390 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 441 (572)
.+.+-+. ...|....+--.+.|++..|.+++......+.+| ...+...+.
T Consensus 87 ~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~ 136 (161)
T 4h7y_A 87 RANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALR 136 (161)
T ss_dssp HHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHH
T ss_pred HHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHH
Confidence 7653333 5666666666678899999999999888876544 344444433
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=92.86 E-value=0.82 Score=41.05 Aligned_cols=81 Identities=11% Similarity=0.006 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHc-----CChHHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHcc
Q 008265 307 FTLEVYKNMQKLGVMAD---MASYNILLKACCLA-----GNTVLAQEIYGEVKHLEAKGVLKLD--VFTYSTIVKVFADA 376 (572)
Q Consensus 307 ~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~ 376 (572)
.|...+++..+ +.|+ ...|..+...|.+. |+.++|.+.|++..++ .|+ ..++......++..
T Consensus 181 ~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L------nP~~~id~~v~YA~~l~~~ 252 (301)
T 3u64_A 181 AAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY------CSAHDPDHHITYADALCIP 252 (301)
T ss_dssp HHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH------CCTTCSHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh------CCCCCchHHHHHHHHHHHh
Confidence 33444444433 5555 34566666666663 6666666666666652 342 44555555555553
Q ss_pred -ccHHHHHHHHHHHHHCCCC
Q 008265 377 -KWWQMALKVKEDMLSAGVT 395 (572)
Q Consensus 377 -g~~~~a~~~~~~m~~~g~~ 395 (572)
|+.+++.+.+++.......
T Consensus 253 ~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 253 LNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp TTCHHHHHHHHHHHHHCCGG
T ss_pred cCCHHHHHHHHHHHHcCCCC
Confidence 6666666666666665444
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.74 E-value=6.6 Score=38.22 Aligned_cols=56 Identities=13% Similarity=-0.047 Sum_probs=36.5
Q ss_pred CChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhc
Q 008265 85 GRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL 142 (572)
Q Consensus 85 g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~ 142 (572)
|+++.|++.+..+.+.....+. ..-+...+..++..+...|+|+...+.+.-+.+.
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d--~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskk 85 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASD--LASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKK 85 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCS--TTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhhhccc--hhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 6788888877666644221110 0012556777888899999999988877766554
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=91.95 E-value=3.4 Score=39.40 Aligned_cols=130 Identities=7% Similarity=-0.076 Sum_probs=81.2
Q ss_pred chhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhC--CCCCccc--chHHHHHHHHhcCCChHHHHHhhhcCCCchhH
Q 008265 148 ELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEF--RLPVKEL--DEEFRIVQLCVNKPDVNLAIRYACIVPRADIL 223 (572)
Q Consensus 148 ~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 223 (572)
...|...|..++.........|+.+.|...+++.... |-...+. ..|. ......++.. .-..
T Consensus 108 ~~~D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~------------~~~r~~l~~~--~~~a 173 (388)
T 2ff4_A 108 NTCDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFV------------EPFATALVED--KVLA 173 (388)
T ss_dssp GGBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTH------------HHHHHHHHHH--HHHH
T ss_pred ccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHH------------HHHHHHHHHH--HHHH
Confidence 3345555555555444434457788888888877654 2111111 0111 0000111100 0134
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCHH
Q 008265 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ-----NVTLNIY 292 (572)
Q Consensus 224 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-----g~~p~~~ 292 (572)
...++..+...|+++++...+..+.... +.+...|..+|.++.+.|+..+|++.|+.+.+. |+.|...
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 5567788889999999999888887653 347789999999999999999999999987642 6666543
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=91.92 E-value=12 Score=38.05 Aligned_cols=249 Identities=10% Similarity=-0.000 Sum_probs=142.8
Q ss_pred HHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHH-
Q 008265 195 FRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM- 273 (572)
Q Consensus 195 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~- 273 (572)
..-+..+.+.+++...+.++...|.+...-.....+....|+...|......+=..|. .....+..++..+.+.|.+.
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~g~lt~ 154 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGKQDP 154 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHhCCCHHHHHHhccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHCCCCCH
Confidence 3456777778899999998887566666667788888889998888777766644432 23446788888888777643
Q ss_pred -HHHHHHHHHHhCCCCCCHHHHHHHHHH--------------hcCChHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHH
Q 008265 274 -KSRAIYEDLRSQNVTLNIYVFNSLMNV--------------NAHDLKFTLEVYKNMQKLGVMADMAS---YNILLKACC 335 (572)
Q Consensus 274 -~a~~~~~~m~~~g~~p~~~~~~~ll~~--------------~~~~~~~a~~~~~~m~~~~~~~~~~~---~~~ll~~~~ 335 (572)
...+-++.+...| +...-..++.. ..++...+...... +.++... +...+.-+.
T Consensus 155 ~~~~~R~~~al~~~---~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~~~~~rla 226 (618)
T 1qsa_A 155 LAYLERIRLAMKAG---NTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFART-----TGATDFTRQMAAVAFASVA 226 (618)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHH-----SCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhc-----cCCChhhHHHHHHHHHHHH
Confidence 3444444444443 11111112111 11222222222111 1223222 122233333
Q ss_pred HcCChHHHHHHHHHHHHHHHhCCCCCCHHH----HHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHc
Q 008265 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFT----YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411 (572)
Q Consensus 336 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~----~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 411 (572)
+ .+.+.|...+..... .. ..+... +..+.......+...++...+....... .+.......+....+.
T Consensus 227 r-~d~~~A~~~~~~~~~---~~--~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~ 298 (618)
T 1qsa_A 227 R-QDAENARLMIPSLAQ---AQ--QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGT 298 (618)
T ss_dssp H-HCHHHHHHHHHHHHH---HT--TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHH
T ss_pred h-cCHHHHHHHHHhhhh---cc--CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHC
Confidence 3 377888888888764 22 223332 2333333444553455666666655442 3333344455555677
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 412 GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 412 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
|+++.|...|..|...... ...-.--+..++.+.|+.++|..+|+.+.+
T Consensus 299 ~d~~~a~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 299 GDRRGLNTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp TCHHHHHHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999999999988653211 232233445577889999999999998864
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.00 E-value=2.7 Score=43.69 Aligned_cols=127 Identities=11% Similarity=-0.037 Sum_probs=79.1
Q ss_pred hhhhhHHHHHHHHHHhhhhh-HHHHHHHHHHHHhCCCCCcccch-HHHHHHHHhcCCC-hHHHHHhhhc-----------
Q 008265 151 DGSGFKLLKNECQRLLDSGE-VEMFVGLMEVLEEFRLPVKELDE-EFRIVQLCVNKPD-VNLAIRYACI----------- 216 (572)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~g~-~~~a~~~~~~----------- 216 (572)
.+.+...+++.+.. .++ .+.|+.+|+++.... |..... ...++..+...++ --+|.++...
T Consensus 247 ~N~L~~~Ll~~~~~---t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~ 321 (754)
T 4gns_B 247 NNYLMYSLKSFIAI---TPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLND 321 (754)
T ss_dssp SSHHHHHHHHHHHT---CGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcc---cccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhh
Confidence 44455555554322 555 688999999988753 221111 2233333333332 1223333221
Q ss_pred CCCch-----------hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008265 217 VPRAD-----------ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283 (572)
Q Consensus 217 ~~~~~-----------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 283 (572)
+++.+ .....-...+...|+++.|+.+-.+....- +-+-.+|..|..+|.+.|+++.|+-.++.+.
T Consensus 322 l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 322 LPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred hcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 22221 123333567788999999999999988752 2356799999999999999999999999874
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=89.72 E-value=3.3 Score=31.83 Aligned_cols=66 Identities=14% Similarity=0.087 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHHHHccccHHH---HHHHHHHHHHCCCCC--chhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 361 LDVFTYSTIVKVFADAKWWQM---ALKVKEDMLSAGVTP--NTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 361 ~~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
++..+-..+..++.+..+... ++.++.++.+.+ .| .....-.|.-++.+.|++++|.++++.+.+.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 555555555666666554443 677777766553 12 3344455666677777777777777777765
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=88.95 E-value=1.8 Score=41.30 Aligned_cols=60 Identities=12% Similarity=0.046 Sum_probs=47.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 401 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
...++..+...|+.+++...+..+.... +-+...|..+|.++.+.|+..+|.+.|++..+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4456777778888888888888887653 55778888888888888998888888887764
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=88.72 E-value=2.1 Score=32.86 Aligned_cols=92 Identities=13% Similarity=0.102 Sum_probs=65.3
Q ss_pred HHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHH---HHHHHHHHHHcCCCC--CHHHHHHHHHHHHH
Q 008265 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ---AMHLFEEMLQAGCEP--NSQCCNILLQACVE 445 (572)
Q Consensus 371 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~~~~p--~~~~~~~li~~~~~ 445 (572)
..-.....+..+.+-+......|. ++..+--.+.+++.+.....+ ++.+++++.+.+ .| .....-.|.-++.+
T Consensus 9 ~~~~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yk 86 (126)
T 1nzn_A 9 NELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYR 86 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHH
Confidence 333334455666667776665554 677777778888888887666 888899887764 23 33444556668999
Q ss_pred hCCHhHHHHHHHHhhhccc
Q 008265 446 ACQFDRAFRLFRSWTLSKT 464 (572)
Q Consensus 446 ~g~~~~A~~~~~~m~~~~~ 464 (572)
.|++++|.+.++.+.+..+
T Consensus 87 lg~Y~~A~~~~~~lL~~eP 105 (126)
T 1nzn_A 87 LKEYEKALKYVRGLLQTEP 105 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCT
T ss_pred hhhHHHHHHHHHHHHHhCC
Confidence 9999999999999887543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.05 E-value=5.3 Score=41.50 Aligned_cols=126 Identities=12% Similarity=0.083 Sum_probs=75.1
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcC---ChHHHHHHHHHHHHc------CCC-CCH----
Q 008265 260 RTIIDVCGICGD-YMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH---DLKFTLEVYKNMQKL------GVM-ADM---- 324 (572)
Q Consensus 260 ~~ll~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~---~~~~a~~~~~~m~~~------~~~-~~~---- 324 (572)
..+++.+...|+ ++.|..+|+++.+.....+......++..... +--+|.+++.+..+. ... .+.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 445555555566 57788888888776321122222233332221 122344444433221 111 111
Q ss_pred ------HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHH
Q 008265 325 ------ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390 (572)
Q Consensus 325 ------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 390 (572)
.....-.+.|...|+++.|..+-++.... .+.+-.+|..|..+|.+.|+++.|+-.++.+.
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~-----aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL-----ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc-----CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 12222244567889999999999998873 24446699999999999999999999888873
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=85.29 E-value=12 Score=29.60 Aligned_cols=92 Identities=10% Similarity=0.090 Sum_probs=45.9
Q ss_pred hHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHH
Q 008265 130 DCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNL 209 (572)
Q Consensus 130 ~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 209 (572)
++.+++|++.... +.|+.......|-.+.--++.+...++.++|.++|+.+++.. .. +
T Consensus 36 ~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h---Kk----------------F-- 93 (161)
T 4h7y_A 36 NKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC---KK----------------F-- 93 (161)
T ss_dssp HHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC---TT----------------B--
T ss_pred HHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---HH----------------H--
Confidence 6777777776664 455433222222222222223333455566666665554320 00 0
Q ss_pred HHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 008265 210 AIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP 254 (572)
Q Consensus 210 a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 254 (572)
..+|-.....=.+.|++..|.+++......+..|
T Consensus 94 -----------AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 94 -----------AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp -----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred -----------HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 1344445555556666666666666666655444
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=84.59 E-value=6.3 Score=28.64 Aligned_cols=60 Identities=13% Similarity=0.105 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008265 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371 (572)
Q Consensus 307 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~ 371 (572)
+..+-++.+....+.|++....+.+.+|-+.+++..|.++|+-++.. . .....+|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~---~~~~~iY~~~lq 87 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--A---GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--T---TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--h---cCchhhHHHHHH
Confidence 44555556666677788888888888888888888888888887753 2 233345665553
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=81.97 E-value=58 Score=34.78 Aligned_cols=152 Identities=9% Similarity=-0.059 Sum_probs=76.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-H--Hh
Q 008265 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVC--GICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM-N--VN 301 (572)
Q Consensus 227 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~--~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll-~--~~ 301 (572)
|...+.-.|+-+-...++..+.+. .+......+.-++ .-.|+.+.+..+.+.+... .....-|...+ . +|
T Consensus 496 LGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~--~dp~vRygaa~alglAy 570 (963)
T 4ady_A 496 MGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINYGRQELADDLITKMLAS--DESLLRYGGAFTIALAY 570 (963)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC--SCHHHHHHHHHHHHHHT
T ss_pred HhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHh
Confidence 444455667777777777766553 1223333333333 3567777777777777654 11223333222 2 34
Q ss_pred c--CChHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccc
Q 008265 302 A--HDLKFTLEVYKNMQKLGVMADMASYNILLK--ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK 377 (572)
Q Consensus 302 ~--~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 377 (572)
+ |+......++..+... ++..+-...+. ++...|+.+.+.++++.+.+ .+ .|.+.--.++.-+....|
T Consensus 571 aGTGn~~aIq~LL~~~~~d---~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~---~~--d~~VR~gAalALGli~aG 642 (963)
T 4ady_A 571 AGTGNNSAVKRLLHVAVSD---SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK---SH--NAHVRCGTAFALGIACAG 642 (963)
T ss_dssp TTSCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG---CS--CHHHHHHHHHHHHHHTSS
T ss_pred cCCCCHHHHHHHHHHhccC---CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh---cC--CHHHHHHHHHHHHHhccC
Confidence 4 4555555577777653 23233333333 33345666555666654443 22 344443333333433333
Q ss_pred cH-HHHHHHHHHHHH
Q 008265 378 WW-QMALKVKEDMLS 391 (572)
Q Consensus 378 ~~-~~a~~~~~~m~~ 391 (572)
.. .++.+++..+..
T Consensus 643 n~~~~aid~L~~L~~ 657 (963)
T 4ady_A 643 KGLQSAIDVLDPLTK 657 (963)
T ss_dssp SCCHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHcc
Confidence 32 566667777754
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 572 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.81 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.8 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.42 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.36 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.0 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.98 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.87 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.82 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.81 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.8 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.65 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.64 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.56 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.48 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.31 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.2 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.15 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.14 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.07 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.06 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.01 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 97.99 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 97.93 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.89 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.86 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 97.8 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.78 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.74 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.68 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.66 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.6 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.56 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.54 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.53 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.45 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.44 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.44 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.37 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.34 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.32 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.28 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.25 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.18 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.15 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.1 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.09 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.86 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.69 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.66 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.65 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.54 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.25 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 95.67 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.91 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 94.89 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 93.01 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 92.99 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 89.7 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 88.56 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 86.77 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 83.07 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 82.89 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=7.9e-16 Score=148.52 Aligned_cols=372 Identities=13% Similarity=0.072 Sum_probs=283.9
Q ss_pred hHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHH
Q 008265 120 IVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQ 199 (572)
Q Consensus 120 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~ 199 (572)
...+.+.|++++|+..|+++.+. .|+.. ..+..+..+ +.+.|++++|+..|++..+. .|....+|..+..
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~--~p~~~---~~~~~la~~---~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~l~~ 75 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNT---GVLLLLSSI---HFQCRRLDRSAHFSTLAIKQ--NPLLAEAYSNLGN 75 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCH---HHHHHHHHH---HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCH---HHHHHHHHH---HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 34567889999999999999886 45422 233333333 34479999999999998875 4677788999999
Q ss_pred HHhcCCChHHHHHhhhcC----CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHH
Q 008265 200 LCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKS 275 (572)
Q Consensus 200 ~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a 275 (572)
.+.+.|++++|+..+... +................+....+............ ................+....+
T Consensus 76 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 154 (388)
T d1w3ba_ 76 VYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEA 154 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHH
T ss_pred Hhhhhcccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccchhhhh
Confidence 999999999999887764 33344555555556666666666666655554433 3344555666667788888888
Q ss_pred HHHHHHHHhCCCCCC-HHHHHHHHHH--hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008265 276 RAIYEDLRSQNVTLN-IYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (572)
Q Consensus 276 ~~~~~~m~~~g~~p~-~~~~~~ll~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 352 (572)
...+....... |+ ...+..+... ..++.++|...+.+..+.... +...+..+...+...|++++|...+.....
T Consensus 155 ~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 231 (388)
T d1w3ba_ 155 KACYLKAIETQ--PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALS 231 (388)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHhhccC--cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhhhhhccccHHHHHHHHHHhHH
Confidence 88888877652 33 3344443333 448899999999998876533 577888899999999999999999999887
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 008265 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432 (572)
Q Consensus 353 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 432 (572)
. .+.+...+..+...+.+.|++++|+..|++..+.... +...|..+...+...|++++|.+.++...... +.+
T Consensus 232 ~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 304 (388)
T d1w3ba_ 232 L-----SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTH 304 (388)
T ss_dssp H-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTC
T ss_pred H-----hhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-Ccc
Confidence 4 2456778888999999999999999999999886432 56788899999999999999999999988764 667
Q ss_pred HHHHHHHHHHHHHhCCHhHHHHHHHHhhhcccccccccccCCchHHHHhhhhhccccccCCCCcccCCccchhhhhcCCC
Q 008265 433 SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK 512 (572)
Q Consensus 433 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (572)
...+..+...+.+.|++++|.+.|++..+. .
T Consensus 305 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-------------------------------------------------~ 335 (388)
T d1w3ba_ 305 ADSLNNLANIKREQGNIEEAVRLYRKALEV-------------------------------------------------F 335 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-------------------------------------------------C
T ss_pred chhhhHHHHHHHHCCCHHHHHHHHHHHHHh-------------------------------------------------C
Confidence 888999999999999999999999987642 3
Q ss_pred C-CHHHHHHHHHHHhh--cHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCC
Q 008265 513 P-TTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPN-HISWTILIDACGGSGN 563 (572)
Q Consensus 513 p-~~~~~~~ll~a~~~--~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~ 563 (572)
| +..+|..+-..|.+ +.++|...|++..+ +.|+ ...|..|..+|.+.||
T Consensus 336 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 336 PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCC
Confidence 4 46677777777765 56899999999887 5675 6689999999988775
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=9.8e-16 Score=147.85 Aligned_cols=357 Identities=13% Similarity=0.055 Sum_probs=268.8
Q ss_pred HHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhH
Q 008265 77 MASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFK 156 (572)
Q Consensus 77 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~ 156 (572)
+...+-+.|++++|++.|+++.+.. |+. ..++..+...+.+.|++++|+..|++..+. .|+.. ..+.
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~--p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~---~a~~ 71 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE--PDN------TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--NPLLA---EAYS 71 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--TTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH---HHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCH---HHHH
Confidence 4456778899999999999999874 432 344556677788999999999999999886 45432 2333
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhh----cCCCchhHHHHHHHHHH
Q 008265 157 LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYAC----IVPRADILFCNFVREFG 232 (572)
Q Consensus 157 ~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~----~~~~~~~~~~~li~~~~ 232 (572)
.+..+ +.+.|++++|+..+....+... .....+..........+....+..... .................
T Consensus 72 ~l~~~---~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (388)
T d1w3ba_ 72 NLGNV---YKERGQLQEAIEHYRHALRLKP--DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLK 146 (388)
T ss_dssp HHHHH---HHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHH---hhhhcccccccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 33333 3457999999999999887543 333334444444444444444333322 22333456666777788
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh--cCChHHHHH
Q 008265 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLE 310 (572)
Q Consensus 233 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~~~~a~~ 310 (572)
..+....+...+....... +-+...+..+...+...|++++|...++...+.. +-+...|..+...+ .+++++|..
T Consensus 147 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~ 224 (388)
T d1w3ba_ 147 ALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVA 224 (388)
T ss_dssp TTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHH
T ss_pred ccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHH
Confidence 8899999998888877653 2356778888899999999999999999987752 12345555555543 489999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHH
Q 008265 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390 (572)
Q Consensus 311 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 390 (572)
.+......+.. +...+..+...+.+.|++++|...|++..+. .+-+..++..+...+...|++++|++.++...
T Consensus 225 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 298 (388)
T d1w3ba_ 225 AYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIEL-----QPHFPDAYCNLANALKEKGSVAEAEDCYNTAL 298 (388)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHhHHHhhh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhh
Confidence 99998876543 6777888889999999999999999998873 13456788999999999999999999999987
Q ss_pred HCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 391 SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 391 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
... +.+...+..+...+...|++++|.+.|++..+.. +-+..++..+..+|.+.|++++|.+.|++..+
T Consensus 299 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 367 (388)
T d1w3ba_ 299 RLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred ccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 763 3466788889999999999999999999988753 33577888999999999999999999998764
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=1.5e-10 Score=108.05 Aligned_cols=225 Identities=13% Similarity=-0.020 Sum_probs=154.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH--------
Q 008265 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYV-------- 293 (572)
Q Consensus 222 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~-------- 293 (572)
..|..+..++...|++++|...|.+..+... -+...|..+...|...|++++|.+.++...... |+...
T Consensus 54 ~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~ 130 (323)
T d1fcha_ 54 EAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEG 130 (323)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC-----
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHhhhcccc-ccccccccccccccccccccccccchhhHHHhc--cchHHHHHhhhhh
Confidence 4566666677777777777777776665432 245666667777777777777777777766542 11100
Q ss_pred --HHHHHH------H--hcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCC
Q 008265 294 --FNSLMN------V--NAHDLKFTLEVYKNMQKLGV-MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD 362 (572)
Q Consensus 294 --~~~ll~------~--~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 362 (572)
...+-. . ..+...++...+.+..+... ..+...+..+...+...|++++|+..|++.... .+-+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~p~~ 205 (323)
T d1fcha_ 131 AGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV-----RPND 205 (323)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC
T ss_pred hhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhccccccccc-----cccc
Confidence 000000 0 01345667777777765432 346777888888999999999999999998874 2345
Q ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHc----------CCCCC
Q 008265 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA----------GCEPN 432 (572)
Q Consensus 363 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----------~~~p~ 432 (572)
...|..+...|.+.|++++|++.|++..+.... +...|..+..+|.+.|++++|.+.|++..+. .....
T Consensus 206 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~ 284 (323)
T d1fcha_ 206 YLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMS 284 (323)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCC
T ss_pred ccchhhhhhcccccccchhHHHHHHHHHHHhhc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHH
Confidence 778999999999999999999999998876322 4567888999999999999999999988752 11222
Q ss_pred HHHHHHHHHHHHHhCCHhHHHHH
Q 008265 433 SQCCNILLQACVEACQFDRAFRL 455 (572)
Q Consensus 433 ~~~~~~li~~~~~~g~~~~A~~~ 455 (572)
...|..+-.++...|+.+.+...
T Consensus 285 ~~~~~~l~~al~~~~~~d~~~~~ 307 (323)
T d1fcha_ 285 ENIWSTLRLALSMLGQSDAYGAA 307 (323)
T ss_dssp HHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHH
Confidence 34566666677777777655444
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=2.6e-10 Score=106.38 Aligned_cols=230 Identities=12% Similarity=0.041 Sum_probs=177.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh--cC
Q 008265 226 NFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AH 303 (572)
Q Consensus 226 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~--~~ 303 (572)
.....+.+.|++++|...|+...+..+ -+...|..+..+|...|++++|...|++..+.. +-+...|..+...+ .|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 356678899999999999999988643 257789999999999999999999999988753 12345555554444 48
Q ss_pred ChHHHHHHHHHHHHcCCCC--------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008265 304 DLKFTLEVYKNMQKLGVMA--------------DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369 (572)
Q Consensus 304 ~~~~a~~~~~~m~~~~~~~--------------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 369 (572)
++++|.+.++......... +.......+..+...+.+.++...|....... . -..+..++..+
T Consensus 102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~--p-~~~~~~~~~~l 178 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD--P-TSIDPDVQCGL 178 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHS--T-TSCCHHHHHHH
T ss_pred cccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHh--h-cccccccchhh
Confidence 9999999999987643210 00111122334455667788888888877632 1 23456788888
Q ss_pred HHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCH
Q 008265 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQF 449 (572)
Q Consensus 370 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 449 (572)
...+...|++++|+..|++....... +...|..+..+|...|++++|.+.|++..+.. +-+..+|..+..+|.+.|++
T Consensus 179 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~ 256 (323)
T d1fcha_ 179 GVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAH 256 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHh-hccHHHHHHHHHHHHHCCCH
Confidence 99999999999999999998876432 56788999999999999999999999998763 33577899999999999999
Q ss_pred hHHHHHHHHhhhc
Q 008265 450 DRAFRLFRSWTLS 462 (572)
Q Consensus 450 ~~A~~~~~~m~~~ 462 (572)
++|.+.|++..+.
T Consensus 257 ~~A~~~~~~al~l 269 (323)
T d1fcha_ 257 REAVEHFLEALNM 269 (323)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987764
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.00 E-value=1.1e-07 Score=89.20 Aligned_cols=290 Identities=12% Similarity=0.004 Sum_probs=176.3
Q ss_pred hHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCC-Ccchh
Q 008265 72 DYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVA-PLELF 150 (572)
Q Consensus 72 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~ 150 (572)
.........+...|++++|++++++..+..+..+.. ....++..+...+...|++++|+..|++..+.... ++.
T Consensus 13 e~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~---~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-- 87 (366)
T d1hz4a_ 13 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFY---SRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW-- 87 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHH---HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH--
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcH---HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcch--
Confidence 444455667788999999999999988764332211 12345666777888999999999999988764211 111
Q ss_pred hhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHH
Q 008265 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230 (572)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~ 230 (572)
......+......+...|++..+...+............. ..+.....+..+...
T Consensus 88 -~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~------------------------~~~~~~~~~~~la~~ 142 (366)
T d1hz4a_ 88 -HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLE------------------------QLPMHEFLVRIRAQL 142 (366)
T ss_dssp -HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCT------------------------TSTHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccc------------------------hhhHHHHHHHHHHHH
Confidence 1122223333334445788888888777654321000000 000011345566777
Q ss_pred HHhcCCHHHHHHHHHHHHhcC----CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCHH--HHHHHH--
Q 008265 231 FGKKRDLVSALRAYDASKKHL----SSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ----NVTLNIY--VFNSLM-- 298 (572)
Q Consensus 231 ~~~~g~~~~a~~~~~~m~~~~----~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~p~~~--~~~~ll-- 298 (572)
+...|+++.+...+....... .......+......+...|+...+...+.+.... +..+... .+....
T Consensus 143 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 222 (366)
T d1hz4a_ 143 LWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIY 222 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred HHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 888888888888888775532 2233456666777788888888888887765432 1111111 111111
Q ss_pred HHhcCChHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 008265 299 NVNAHDLKFTLEVYKNMQKLGVM---ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTIVKVFA 374 (572)
Q Consensus 299 ~~~~~~~~~a~~~~~~m~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~ 374 (572)
....++.+.|...+....+.... .....+..+..++...|++++|...++............|+ ...+..+...|.
T Consensus 223 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 302 (366)
T d1hz4a_ 223 WQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYW 302 (366)
T ss_dssp HHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHH
Confidence 12337788888887766543222 22345566777888889999999888887654332222333 346677777888
Q ss_pred ccccHHHHHHHHHHHHH
Q 008265 375 DAKWWQMALKVKEDMLS 391 (572)
Q Consensus 375 ~~g~~~~a~~~~~~m~~ 391 (572)
+.|++++|.+.+++..+
T Consensus 303 ~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 303 QAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 88888888888877643
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.98 E-value=3.1e-07 Score=85.85 Aligned_cols=304 Identities=13% Similarity=0.054 Sum_probs=193.2
Q ss_pred hhHhhhhhCChhHHHHHHHHhhhcCCCCcchh--hhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHH
Q 008265 119 GIVKSIREGRIDCVVGVLKKLNELGVAPLELF--DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFR 196 (572)
Q Consensus 119 ~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~--~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 196 (572)
....+...|++++|+.++++..+. .|+... ....+..+.. .+...|++++|+..|++..+......+. ..
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~--~~~~~~~~~~~a~~~lg~---~~~~~g~~~~A~~~~~~a~~~~~~~~~~--~~- 89 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEE--LPPGWFYSRIVATSVLGE---VLHCKGELTRSLALMQQTEQMARQHDVW--HY- 89 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHT--CCTTCHHHHHHHHHHHHH---HHHHHTCHHHHHHHHHHHHHHHHHTTCH--HH-
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhh--CcCCCcHHHHHHHHHHHH---HHHHCCCHHHHHHHHHHHHHHHHhhcch--HH-
Confidence 455677999999999999998775 333211 1112222222 2344799999999998776432111110 00
Q ss_pred HHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCC--Cc-HHHHHHHHHHHHhc
Q 008265 197 IVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKK----HLSS--PN-MYICRTIIDVCGIC 269 (572)
Q Consensus 197 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~--~~-~~~~~~ll~~~~~~ 269 (572)
....+..+...+...|++..+...+..... .+.. +. ...+..+...+...
T Consensus 90 -----------------------~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 146 (366)
T d1hz4a_ 90 -----------------------ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAW 146 (366)
T ss_dssp -----------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHT
T ss_pred -----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHh
Confidence 013455677788888998888888876543 1111 11 23556677888999
Q ss_pred CCHHHHHHHHHHHHhCCC----CCCHHHHHHHHHH--hcCChHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHHc
Q 008265 270 GDYMKSRAIYEDLRSQNV----TLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKL----GVMAD--MASYNILLKACCLA 337 (572)
Q Consensus 270 g~~~~a~~~~~~m~~~g~----~p~~~~~~~ll~~--~~~~~~~a~~~~~~m~~~----~~~~~--~~~~~~ll~~~~~~ 337 (572)
|+++.+...+........ ......+...... ..++...+...+.+.... +..+. ...+..+...+...
T Consensus 147 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (366)
T d1hz4a_ 147 ARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMT 226 (366)
T ss_dssp TCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT
T ss_pred cchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhc
Confidence 999999999988875421 1122233322222 237778877777665432 11111 23455666778899
Q ss_pred CChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHH----CCCCCch-hhHHHHHHHHHHcC
Q 008265 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS----AGVTPNT-ITWSSLINACANAG 412 (572)
Q Consensus 338 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~~-~~~~~li~~~~~~g 412 (572)
|++++|...+.......... .......+..+...+...|++++|...+++... .+..|+. ..+..+...|.+.|
T Consensus 227 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 305 (366)
T d1hz4a_ 227 GDKAAAANWLRHTAKPEFAN-NHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAG 305 (366)
T ss_dssp TCHHHHHHHHHHSCCCCCTT-CGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCC
Confidence 99999999998876532111 122344667788899999999999999998753 3444443 56788889999999
Q ss_pred CHHHHHHHHHHHHH----cCCCC----CHHHHHHHHHHHHHhCCHhHHHH
Q 008265 413 LVEQAMHLFEEMLQ----AGCEP----NSQCCNILLQACVEACQFDRAFR 454 (572)
Q Consensus 413 ~~~~a~~~~~~m~~----~~~~p----~~~~~~~li~~~~~~g~~~~A~~ 454 (572)
++++|.+.+++..+ .|... ....+..++..+.+.++.+++.+
T Consensus 306 ~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 306 RKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred CHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 99999999998754 23211 22345556667777777776654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.87 E-value=6e-07 Score=82.20 Aligned_cols=185 Identities=14% Similarity=0.085 Sum_probs=88.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc--CChHHHHHHH
Q 008265 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVY 312 (572)
Q Consensus 235 g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~a~~~~ 312 (572)
+..++|..+|+...+...+.+...|...+..+.+.|+++.|..+|+.+.+.........|...+.... ++.+.|..+|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34566777777766543444555666667777777777777777777765422222233444443322 3455555555
Q ss_pred HHHHHcCCCCCHHHHHHHHHH-HHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHH
Q 008265 313 KNMQKLGVMADMASYNILLKA-CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391 (572)
Q Consensus 313 ~~m~~~~~~~~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 391 (572)
..+.+.+.. +...|...... +...|+.+.|..+|+.+... .+.+...|...+..+.+.|++++|..+|++..+
T Consensus 158 ~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-----~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~ 231 (308)
T d2onda1 158 KKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-----YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 231 (308)
T ss_dssp HHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-----hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 555443322 11222221111 22234555555555555442 123344455555555555555555555555444
Q ss_pred CC-CCCc--hhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008265 392 AG-VTPN--TITWSSLINACANAGLVEQAMHLFEEML 425 (572)
Q Consensus 392 ~g-~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~ 425 (572)
.. ..|+ ...|...+..-...|+.+.+..+++++.
T Consensus 232 ~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~ 268 (308)
T d2onda1 232 SGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp SSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 32 1221 1234444444444455555555544443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.82 E-value=1.9e-06 Score=78.90 Aligned_cols=128 Identities=7% Similarity=-0.060 Sum_probs=69.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008265 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG-DYMKSRAIYEDLRSQNVTLNIYVFNSLMNV 300 (572)
Q Consensus 222 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 300 (572)
..++.+...+.+.+.+++|+++++.+.+..+. +...|+....++...| ++++|+..++...+... -+...|+.+-..
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p-~~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH-hhhhHHHHHhHH
Confidence 55666666777777777777777777765322 4556666666666654 36777777766655421 122233322222
Q ss_pred --hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008265 301 --NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (572)
Q Consensus 301 --~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 352 (572)
..|++++|+..++++.+.... +...|..+...+.+.|++++|...++.+.+
T Consensus 122 ~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~ 174 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLK 174 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred HHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 224555555555555443322 344555555555555555555555555544
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.81 E-value=8.9e-07 Score=81.02 Aligned_cols=187 Identities=13% Similarity=0.090 Sum_probs=142.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 008265 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347 (572)
Q Consensus 270 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 347 (572)
+..++|..+|++..+...+-+...|...... ..++.+.|..+|+.+.+.........|...+..+.+.|+.+.|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 3468889999998876444455555555444 44889999999999987655444567899999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHH-HHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008265 348 GEVKHLEAKGVLKLDVFTYSTIVKV-FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426 (572)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 426 (572)
+.+.+. + +.+...|...... +...|+.+.|..+|+.+.+.. ..+...|...+..+.+.|+++.|..+|++..+
T Consensus 158 ~~al~~---~--~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~ 231 (308)
T d2onda1 158 KKARED---A--RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 231 (308)
T ss_dssp HHHHTS---T--TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHh---C--CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 998862 1 2334444443332 345689999999999998862 23567899999999999999999999999887
Q ss_pred cC-CCCC--HHHHHHHHHHHHHhCCHhHHHHHHHHhhhc
Q 008265 427 AG-CEPN--SQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (572)
Q Consensus 427 ~~-~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 462 (572)
.. ..|+ ...|...+.--...|+.+.+.++++++.+.
T Consensus 232 ~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 232 SGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp SSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 53 3433 467888888778899999999999988653
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.80 E-value=1.3e-06 Score=79.96 Aligned_cols=196 Identities=10% Similarity=-0.031 Sum_probs=147.9
Q ss_pred CcccchHHHHHHHHhcCCChHHHHHhhhcC----CCchhHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCcHHHHHHH
Q 008265 188 VKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKR-DLVSALRAYDASKKHLSSPNMYICRTI 262 (572)
Q Consensus 188 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~l 262 (572)
|.-...++.+...+.+.+..++|+++++.+ |.+...|+....++...| ++++|...++...+.... +..+|+.+
T Consensus 40 p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~ 118 (315)
T d2h6fa1 40 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHR 118 (315)
T ss_dssp HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHH
Confidence 333456777888888999999999998875 777788999999988876 599999999999886433 67899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc--CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-
Q 008265 263 IDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN- 339 (572)
Q Consensus 263 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~- 339 (572)
...+.+.|++++|+..++.+.+.. +-+...|..+...+. +++++|+..++++.+.++. +...|+.+...+.+.+.
T Consensus 119 ~~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~ 196 (315)
T d2h6fa1 119 RVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGY 196 (315)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCS
T ss_pred hHHHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHcccc
Confidence 999999999999999999998763 234666766655544 8999999999999987654 67788877777766665
Q ss_pred -----hHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHC
Q 008265 340 -----TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (572)
Q Consensus 340 -----~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 392 (572)
+++|...+....+. .+.+...|+.+...+... ..+++.+.+....+.
T Consensus 197 ~~~~~~~~ai~~~~~al~~-----~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l 248 (315)
T d2h6fa1 197 NDRAVLEREVQYTLEMIKL-----VPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDL 248 (315)
T ss_dssp CSHHHHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHH
T ss_pred chhhhhHHhHHHHHHHHHh-----CCCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHh
Confidence 46777777777763 133566676665554443 346666666666554
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.65 E-value=7.9e-07 Score=79.04 Aligned_cols=88 Identities=8% Similarity=-0.089 Sum_probs=45.5
Q ss_pred HhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 008265 165 LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAY 244 (572)
Q Consensus 165 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 244 (572)
+.+.|++++|+..|++.++. .|++.. +|..+..+|.+.|++++|.+.|
T Consensus 47 y~~~g~~~~A~~~~~~al~l--~p~~~~------------------------------a~~~lg~~~~~~g~~~~A~~~~ 94 (259)
T d1xnfa_ 47 YDSLGLRALARNDFSQALAI--RPDMPE------------------------------VFNYLGIYLTQAGNFDAAYEAF 94 (259)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CCCCHH------------------------------HHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHhhcc--CCCCHH------------------------------HHhhhchHHHHHHHHHHhhhhh
Confidence 34466777777777666553 344444 4444555555555555555555
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008265 245 DASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (572)
Q Consensus 245 ~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 285 (572)
++..+.... +...|..+..+|...|++++|...|+...+.
T Consensus 95 ~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 134 (259)
T d1xnfa_ 95 DSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQD 134 (259)
T ss_dssp HHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHhh-hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 555443221 2334444445555555555555555555443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.64 E-value=6.3e-07 Score=79.67 Aligned_cols=193 Identities=9% Similarity=-0.038 Sum_probs=126.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 008265 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN-IYVFNSLMNV 300 (572)
Q Consensus 222 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~ 300 (572)
.++..+...|.+.|++++|.+.|++..+..+ -+..+|+.+..+|.+.|++++|+..|++..+.. |+ ...+..+-.+
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~ 114 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAHLNRGIA 114 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccCC-CCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH--hhhhhhHHHHHHH
Confidence 5677788999999999999999999988643 367899999999999999999999999998863 33 3344444333
Q ss_pred --hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc---
Q 008265 301 --NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD--- 375 (572)
Q Consensus 301 --~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~--- 375 (572)
..|++++|...|+...+.... +......+..++.+.+..+....+...... ..++...++ ++..+..
T Consensus 115 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-~~~~~~~~~~ 186 (259)
T d1xnfa_ 115 LYYGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHFEK------SDKEQWGWN-IVEFYLGNIS 186 (259)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHH------SCCCSTHHH-HHHHHTTSSC
T ss_pred HHHHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHhhc------cchhhhhhh-HHHHHHHHHH
Confidence 448899999999988876432 444444444555566666555555555544 222222222 2222222
Q ss_pred -cccHHHHHHHHHHHHHCCCCCc-hhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 376 -AKWWQMALKVKEDMLSAGVTPN-TITWSSLINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 376 -~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
.+..+.+...+...... .|+ ..+|..+...|...|++++|.+.|+...+.
T Consensus 187 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 187 EQTLMERLKADATDNTSL--AEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp HHHHHHHHHHHCCSHHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhhc--CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 12233333333222211 122 245667888888999999999999988865
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.56 E-value=1.1e-07 Score=88.40 Aligned_cols=258 Identities=5% Similarity=-0.133 Sum_probs=139.8
Q ss_pred hHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008265 170 EVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKK 249 (572)
Q Consensus 170 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 249 (572)
..++|+++++...+. .|+....|+..-..+.. .......+...|.+++|+.+++...+
T Consensus 44 ~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~--------------------l~~~~~~~~~~~~~~~al~~~~~~l~ 101 (334)
T d1dcea1 44 LDESVLELTSQILGA--NPDFATLWNCRREVLQH--------------------LETEKSPEESAALVKAELGFLESCLR 101 (334)
T ss_dssp CSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH--------------------HHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHH--------------------HhhhcchHHHHHHHHHHHHHHHHHHH
Confidence 348899999988764 46665556533222111 11111123334556666667766665
Q ss_pred cCCCCcHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHH-H--hcCChHHHHHHHHHHHHcCCCCCH
Q 008265 250 HLSSPNMYICRTIIDVCGICG--DYMKSRAIYEDLRSQNVTLNIYVFNSLMN-V--NAHDLKFTLEVYKNMQKLGVMADM 324 (572)
Q Consensus 250 ~~~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~~~~~ll~-~--~~~~~~~a~~~~~~m~~~~~~~~~ 324 (572)
..+ -+...|..+..++...+ ++++|...++...+.. +++...+...+. . ..+..++|+..++.+.+.+.. +.
T Consensus 102 ~~p-k~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~ 178 (334)
T d1dcea1 102 VNP-KSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NY 178 (334)
T ss_dssp HCT-TCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CH
T ss_pred hCC-CcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CH
Confidence 432 24455555555555544 3667777777766542 122333322221 2 235667777777766665443 56
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHH
Q 008265 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404 (572)
Q Consensus 325 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 404 (572)
..|..+...+.+.|++++|...+...... .|+. ..+...+...+..+++...+........ ++...+..+
T Consensus 179 ~a~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~~-~~~~~~~~l 248 (334)
T d1dcea1 179 SSWHYRSCLLPQLHPQPDSGPQGRLPENV------LLKE---LELVQNAFFTDPNDQSAWFYHRWLLGRA-EPLFRCELS 248 (334)
T ss_dssp HHHHHHHHHHHHHSCCCCSSSCCSSCHHH------HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSCC-CCSSSCCCC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHh------HHHH---HHHHHHHHHhcchhHHHHHHHHHHHhCc-chhhHHHHH
Confidence 66777777777777776665555544432 1111 1122233444555566666666555432 234445555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhcc
Q 008265 405 INACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463 (572)
Q Consensus 405 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 463 (572)
...+...|+.++|...+.+..+.. +-+..++..+..++.+.|+.++|.+.|++..+.+
T Consensus 249 ~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld 306 (334)
T d1dcea1 249 VEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 306 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 566666666777777666665442 2234556666666777777777777777666544
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.48 E-value=1.9e-06 Score=79.82 Aligned_cols=251 Identities=10% Similarity=-0.079 Sum_probs=119.9
Q ss_pred hhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHH-------HhhhhhHHHHHHHHHHHHhCCCCCcccchHHHH
Q 008265 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQR-------LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRI 197 (572)
Q Consensus 125 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~-------~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 197 (572)
..+..++|++++++..+. .|+... .++..-..+.. ....|++++|+.+++...+. .|++...|..+
T Consensus 41 ~~~~~~~al~~~~~~l~~--~P~~~~---a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~--~pk~~~~~~~~ 113 (334)
T d1dcea1 41 AGELDESVLELTSQILGA--NPDFAT---LWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHR 113 (334)
T ss_dssp TTCCSHHHHHHHHHHHHH--CTTCHH---HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred cccccHHHHHHHHHHHHH--CCCcHH---HHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHh--CCCcHHHHHHh
Confidence 334458999999999875 566431 11111111111 12356788888888887764 45555555544
Q ss_pred HHHHhcCC--ChHHHHHhhhcC----CCchhHH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC
Q 008265 198 VQLCVNKP--DVNLAIRYACIV----PRADILF-CNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG 270 (572)
Q Consensus 198 l~~~~~~g--~~~~a~~~~~~~----~~~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 270 (572)
..++...+ +.++|...+... |+....+ ......+...|.+++|...++...+..+ -+...|+.+...+.+.|
T Consensus 114 ~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p-~~~~a~~~l~~~~~~~~ 192 (334)
T d1dcea1 114 CWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLH 192 (334)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHS
T ss_pred hHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhc
Confidence 44443333 234444433332 2222222 1222333344444444444444433321 13334444444444444
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008265 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350 (572)
Q Consensus 271 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 350 (572)
++++|...+.... .++.. ...+...+...+..+++...+...
T Consensus 193 ~~~~A~~~~~~~~--------------------------~~~~~------------~~~~~~~~~~l~~~~~a~~~~~~~ 234 (334)
T d1dcea1 193 PQPDSGPQGRLPE--------------------------NVLLK------------ELELVQNAFFTDPNDQSAWFYHRW 234 (334)
T ss_dssp CCCCSSSCCSSCH--------------------------HHHHH------------HHHHHHHHHHHCSSCSHHHHHHHH
T ss_pred CHHHHHHHHHHhH--------------------------HhHHH------------HHHHHHHHHHhcchhHHHHHHHHH
Confidence 4443332222211 11111 011222334445555555555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
... -+++...+..+...+...|+.++|...+.+..+.... +...|..+..++...|+.++|.+.++...+.
T Consensus 235 l~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 235 LLG-----RAEPLFRCELSVEKSTVLQSELESCKELQELEPENKW-CLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp HHS-----CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred HHh-----CcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 431 1233334455555556666666666666666544211 3345566666666667777777777766654
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.31 E-value=1.5e-05 Score=71.88 Aligned_cols=211 Identities=9% Similarity=-0.047 Sum_probs=126.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008265 223 LFCNFVREFGKKRDLVSALRAYDASKKH----LSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL 297 (572)
Q Consensus 223 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 297 (572)
.|......|...|++++|.+.|.+..+. +-.+ -..+|..+..+|.+.|++++|...++...+.-
T Consensus 39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~----------- 107 (290)
T d1qqea_ 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIF----------- 107 (290)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHh-----------
Confidence 4555667777778888888777766442 1111 23577788888888899998888887665420
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHc
Q 008265 298 MNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC-LAGNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFAD 375 (572)
Q Consensus 298 l~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~ 375 (572)
...++...+ ..++..+...|. ..|++++|.+.+.+..++.......+ -..++..+...|.+
T Consensus 108 --~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~ 170 (290)
T d1qqea_ 108 --THRGQFRRG---------------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL 170 (290)
T ss_dssp --HHTTCHHHH---------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred --hhcccchhH---------------HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHH
Confidence 001111111 233444444553 35888888888887766432221111 13357777888888
Q ss_pred cccHHHHHHHHHHHHHCCCCCch------hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-C---CHHHHHHHHHHHHH
Q 008265 376 AKWWQMALKVKEDMLSAGVTPNT------ITWSSLINACANAGLVEQAMHLFEEMLQAGCE-P---NSQCCNILLQACVE 445 (572)
Q Consensus 376 ~g~~~~a~~~~~~m~~~g~~p~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p---~~~~~~~li~~~~~ 445 (572)
.|++++|+..|+++......... ..+...+..+...|+.+.|...+++..+.... + .......++.++..
T Consensus 171 ~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~ 250 (290)
T d1qqea_ 171 DGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNE 250 (290)
T ss_dssp TTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHT
T ss_pred cChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHh
Confidence 88999999988887765322111 12334455666788888888888887654211 1 12345566666554
Q ss_pred --hCCHhHHHHHHHHhhh
Q 008265 446 --ACQFDRAFRLFRSWTL 461 (572)
Q Consensus 446 --~g~~~~A~~~~~~m~~ 461 (572)
.+.+++|..-|+++.+
T Consensus 251 ~d~e~~~eai~~y~~~~~ 268 (290)
T d1qqea_ 251 GDSEQLSEHCKEFDNFMR 268 (290)
T ss_dssp TCTTTHHHHHHHHTTSSC
T ss_pred cCHHHHHHHHHHHHHHhh
Confidence 2347777777766554
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.20 E-value=3.3e-05 Score=69.52 Aligned_cols=216 Identities=11% Similarity=-0.015 Sum_probs=125.8
Q ss_pred hhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhcCCCCcchh
Q 008265 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (572)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 150 (572)
...|......|...|++++|.+.|.+........... .-....+..+...|.+.|++++|+..+++..+.....+.
T Consensus 37 a~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~--~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~-- 112 (290)
T d1qqea_ 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNE--DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ-- 112 (290)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhccc--
Confidence 5678999999999999999999999987642211100 012456777788899999999999999887664111110
Q ss_pred hhhhhHHHHHHHHHH-hhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHH
Q 008265 151 DGSGFKLLKNECQRL-LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVR 229 (572)
Q Consensus 151 ~~~~~~~l~~~~~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~ 229 (572)
.......+......+ ...|++++|+..+++..+.. ...++... ...++..+..
T Consensus 113 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~----------------~~~~~~~~----------~~~~~~~la~ 166 (290)
T d1qqea_ 113 FRRGANFKFELGEILENDLHDYAKAIDCYELAGEWY----------------AQDQSVAL----------SNKCFIKCAD 166 (290)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH----------------HHTTCHHH----------HHHHHHHHHH
T ss_pred chhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHH----------------HhcCchhh----------hhhHHHHHHH
Confidence 111122222222122 22477888888777654310 00111110 0145667778
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCC-----cH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC---HHHHHHHHH
Q 008265 230 EFGKKRDLVSALRAYDASKKHLSSP-----NM-YICRTIIDVCGICGDYMKSRAIYEDLRSQNVT-LN---IYVFNSLMN 299 (572)
Q Consensus 230 ~~~~~g~~~~a~~~~~~m~~~~~~~-----~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-p~---~~~~~~ll~ 299 (572)
.+.+.|++++|...|+......... .. ..+...+-.+...|+++.|...|+...+.... ++ ......++.
T Consensus 167 ~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~ 246 (290)
T d1qqea_ 167 LKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLID 246 (290)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHH
Confidence 8888888888888888776542211 11 22334444566778888888888877655211 11 223455555
Q ss_pred Hhc----CChHHHHHHHHHHH
Q 008265 300 VNA----HDLKFTLEVYKNMQ 316 (572)
Q Consensus 300 ~~~----~~~~~a~~~~~~m~ 316 (572)
++. +.+++|+..|+.+.
T Consensus 247 a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 247 AVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHhcCHHHHHHHHHHHHHHh
Confidence 543 23667777666544
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=9e-05 Score=61.72 Aligned_cols=118 Identities=10% Similarity=-0.012 Sum_probs=85.1
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHH
Q 008265 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381 (572)
Q Consensus 302 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 381 (572)
.|+++.|++.|.++ .+|+..+|..+..+|...|++++|++.|++..++. +.+...|..+..+|.+.|++++
T Consensus 18 ~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-----p~~~~a~~~~g~~~~~~g~~~~ 88 (192)
T d1hh8a_ 18 KKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-----KHLAVAYFQRGMLYYQTEKYDL 88 (192)
T ss_dssp TTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHH
T ss_pred CCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-----hhhhhhHHHHHHHHHhhccHHH
Confidence 36777777777654 24566777788888888888888888888888742 3456688888888888888888
Q ss_pred HHHHHHHHHHCCCC--------------Cc-hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 008265 382 ALKVKEDMLSAGVT--------------PN-TITWSSLINACANAGLVEQAMHLFEEMLQAG 428 (572)
Q Consensus 382 a~~~~~~m~~~g~~--------------p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 428 (572)
|++.|++....... ++ ..++..+..++.+.|++++|.+.+....+..
T Consensus 89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 88888887653110 01 1345566777888889999988888877653
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=8.2e-05 Score=59.86 Aligned_cols=120 Identities=12% Similarity=0.089 Sum_probs=92.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHH
Q 008265 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408 (572)
Q Consensus 329 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 408 (572)
.....|.+.|++++|+..|.+..++ -+.+...|..+..+|...|++++|++.|++..+.... +...|..+..+|
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~ 88 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIEL-----NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASN 88 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHhhhcccc-----chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHH
Confidence 3456788999999999999999985 2456778999999999999999999999999887432 557899999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHHhCCHhHHHHH
Q 008265 409 ANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA--CVEACQFDRAFRL 455 (572)
Q Consensus 409 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~ 455 (572)
...|++++|...+++..... +-+...+..+..+ ....+.+++|...
T Consensus 89 ~~~g~~~eA~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 89 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999998864 2234444444333 3334445555544
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.07 E-value=9.2e-05 Score=55.89 Aligned_cols=92 Identities=20% Similarity=0.072 Sum_probs=72.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHH
Q 008265 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409 (572)
Q Consensus 330 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 409 (572)
-...+.+.|++++|+..|.+..+. -+.+...|..+..+|.+.|++++|++.+....+.+.. +...|..+..++.
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~-----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~ 82 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKL-----DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALE 82 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc-----CCcchhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHH
Confidence 345677888888888888888764 2456667888888888888888888888888876533 6677888888888
Q ss_pred HcCCHHHHHHHHHHHHHc
Q 008265 410 NAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 410 ~~g~~~~a~~~~~~m~~~ 427 (572)
..|++++|...|+...+.
T Consensus 83 ~~~~~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 83 FLNRFEEAKRTYEEGLKH 100 (117)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HccCHHHHHHHHHHHHHh
Confidence 888888888888888865
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.06 E-value=4.6e-05 Score=63.59 Aligned_cols=124 Identities=10% Similarity=-0.102 Sum_probs=101.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHH
Q 008265 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410 (572)
Q Consensus 331 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 410 (572)
...+...|+++.|++.|.++ .+|+..+|..+..+|.+.|++++|++.|++..+.... +...|..+..+|.+
T Consensus 12 g~~~~~~~d~~~Al~~~~~i--------~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~ 82 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV--------QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQ 82 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS--------SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHh
Confidence 44567899999999999764 3678889999999999999999999999999987543 66789999999999
Q ss_pred cCCHHHHHHHHHHHHHcC------------C--CCC-HHHHHHHHHHHHHhCCHhHHHHHHHHhhhcc
Q 008265 411 AGLVEQAMHLFEEMLQAG------------C--EPN-SQCCNILLQACVEACQFDRAFRLFRSWTLSK 463 (572)
Q Consensus 411 ~g~~~~a~~~~~~m~~~~------------~--~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 463 (572)
.|++++|...|++..... . .++ ..++..+..++.+.|++++|.+.|....+..
T Consensus 83 ~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 83 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 999999999999987531 0 111 3566677788999999999999999876543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.01 E-value=8e-05 Score=56.25 Aligned_cols=92 Identities=13% Similarity=-0.023 Sum_probs=81.4
Q ss_pred HHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC
Q 008265 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448 (572)
Q Consensus 369 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 448 (572)
-...+.+.|++++|+..|++..+.... +...|..+..+|...|++++|+..+....+.+ +.+...|..+..++...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccC
Confidence 346788899999999999999887433 66789999999999999999999999999875 5688899999999999999
Q ss_pred HhHHHHHHHHhhhc
Q 008265 449 FDRAFRLFRSWTLS 462 (572)
Q Consensus 449 ~~~A~~~~~~m~~~ 462 (572)
+++|...|++..+.
T Consensus 87 ~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 87 FEEAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998753
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.99 E-value=6.4e-05 Score=63.20 Aligned_cols=98 Identities=10% Similarity=-0.021 Sum_probs=75.0
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCC-chhh
Q 008265 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP-NTIT 400 (572)
Q Consensus 322 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~ 400 (572)
|+...+......|.+.|++++|+..|.+.... -+.+...|..+..+|.+.|++++|+..|.+..+. .| +...
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~-----~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l--~p~~~~a 74 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR-----NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKA 74 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh--CCCcHHH
Confidence 55666666777888888888888888887764 2456667888888888888888888888888765 34 4567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008265 401 WSSLINACANAGLVEQAMHLFEEMLQ 426 (572)
Q Consensus 401 ~~~li~~~~~~g~~~~a~~~~~~m~~ 426 (572)
|..+..+|.+.|++++|...|++..+
T Consensus 75 ~~~lg~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 75 HFFLGQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77888888888888888888887764
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.93 E-value=6.3e-05 Score=63.24 Aligned_cols=101 Identities=10% Similarity=-0.021 Sum_probs=86.9
Q ss_pred CCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008265 361 LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440 (572)
Q Consensus 361 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 440 (572)
|+...+......|.+.|++++|+..|.+..+... -+...|..+..+|.+.|++++|...|+...+.. +-+...|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p-~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence 5666677778899999999999999999887743 367889999999999999999999999998753 33578899999
Q ss_pred HHHHHhCCHhHHHHHHHHhhhcc
Q 008265 441 QACVEACQFDRAFRLFRSWTLSK 463 (572)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~m~~~~ 463 (572)
.+|.+.|++++|...|++..+..
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~ 102 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLA 102 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999877644
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.89 E-value=8e-05 Score=55.71 Aligned_cols=89 Identities=12% Similarity=0.021 Sum_probs=61.0
Q ss_pred HHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC
Q 008265 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448 (572)
Q Consensus 369 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 448 (572)
+...+.+.|++++|+..|++..+.... +...|..+..++.+.|++++|...|++..+.. +.+...+..+...|...|+
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCC
Confidence 445566677777777777777665322 45667777777777777777777777776653 3456677777777777777
Q ss_pred HhHHHHHHHHh
Q 008265 449 FDRAFRLFRSW 459 (572)
Q Consensus 449 ~~~A~~~~~~m 459 (572)
+++|.+.|++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777777664
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.86 E-value=7.7e-05 Score=56.62 Aligned_cols=100 Identities=13% Similarity=0.087 Sum_probs=77.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc---ccHHHHHHHHHHHHHCCCCCch-hhHHH
Q 008265 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA---KWWQMALKVKEDMLSAGVTPNT-ITWSS 403 (572)
Q Consensus 328 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~g~~p~~-~~~~~ 403 (572)
..+++.+...+++++|++.|+...... +.+..++..+..++.+. +++++|+.+++++...+..|+. .+|..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-----p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~ 77 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-----SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFY 77 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-----CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-----CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHH
Confidence 457788888899999999999988742 45677888888888764 4556799999998876544442 46778
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 008265 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434 (572)
Q Consensus 404 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 434 (572)
+..+|.+.|++++|.+.|+++.+. .|+..
T Consensus 78 Lg~~y~~~g~~~~A~~~~~~aL~~--~P~~~ 106 (122)
T d1nzna_ 78 LAVGNYRLKEYEKALKYVRGLLQT--EPQNN 106 (122)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh--CcCCH
Confidence 889999999999999999999886 46543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.80 E-value=0.00021 Score=57.38 Aligned_cols=94 Identities=14% Similarity=0.072 Sum_probs=82.1
Q ss_pred HHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Q 008265 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447 (572)
Q Consensus 368 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 447 (572)
.....|.+.|++++|+..|.+..+.... +...|..+..+|...|++++|...|+...+.. +-+...|..+..++...|
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcC
Confidence 3446788999999999999999987533 66889999999999999999999999999874 456789999999999999
Q ss_pred CHhHHHHHHHHhhhcc
Q 008265 448 QFDRAFRLFRSWTLSK 463 (572)
Q Consensus 448 ~~~~A~~~~~~m~~~~ 463 (572)
++++|...+++.....
T Consensus 93 ~~~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 93 KFRAALRDYETVVKVK 108 (159)
T ss_dssp CHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHcC
Confidence 9999999999987653
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.78 E-value=0.00015 Score=54.18 Aligned_cols=89 Identities=9% Similarity=-0.074 Sum_probs=61.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHH
Q 008265 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409 (572)
Q Consensus 330 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 409 (572)
+...+.+.|++++|+..|++.... -+-+...|..+..++.+.|++++|+..|++..+.... +...|..+..+|.
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~ 95 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQK-----EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHT 95 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhccc-----ccccchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHH
Confidence 344566777777777777777763 1234667777777777777777777777777665322 4566777777777
Q ss_pred HcCCHHHHHHHHHHH
Q 008265 410 NAGLVEQAMHLFEEM 424 (572)
Q Consensus 410 ~~g~~~~a~~~~~~m 424 (572)
..|+.++|.+.+++.
T Consensus 96 ~~g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 96 NEHNANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHH
Confidence 777777777777764
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.74 E-value=0.00048 Score=56.16 Aligned_cols=136 Identities=7% Similarity=-0.023 Sum_probs=95.4
Q ss_pred CcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCC-CchhHH
Q 008265 146 PLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVP-RADILF 224 (572)
Q Consensus 146 p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~~~~~ 224 (572)
|+..++...|..+......+...|++++|...|...+... +.+..... ..+.+ +...-..+. .....+
T Consensus 2 ~~~~~D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~l~~~-------~~~~w--~~~~r~~l~~~~~~a~ 70 (179)
T d2ff4a2 2 PDNTCDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREW--RGPVLDDL-------RDFQF--VEPFATALVEDKVLAH 70 (179)
T ss_dssp CGGGBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CSSTTGGG-------TTSTT--HHHHHHHHHHHHHHHH
T ss_pred CchhccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cccccccC-------cchHH--HHHHHHHHHHHHHHHH
Confidence 4555577788888887778888999999999999987642 11111000 00100 000000000 112567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHH
Q 008265 225 CNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS-----QNVTLNIYV 293 (572)
Q Consensus 225 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~ 293 (572)
..+...+.+.|++++|...++.+.+... -+...|..++.+|.+.|+.++|++.|+++.+ .|+.|...+
T Consensus 71 ~~la~~~~~~g~~~~Al~~~~~al~~~P-~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 71 TAKAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCchHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 7889999999999999999999988643 4788999999999999999999999999754 477777654
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.68 E-value=0.0016 Score=52.61 Aligned_cols=119 Identities=13% Similarity=-0.027 Sum_probs=84.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCC-C---------CCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCC
Q 008265 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL-K---------LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396 (572)
Q Consensus 327 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~---------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 396 (572)
+......+.+.|++++|+..|.+.......... . .-..+|+.+..+|.+.|++++|+..++...+....
T Consensus 16 l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~- 94 (170)
T d1p5qa1 16 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN- 94 (170)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcccc-
Confidence 444556778888888888888887764211100 0 01245677888899999999999999999887432
Q ss_pred chhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Q 008265 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447 (572)
Q Consensus 397 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 447 (572)
+...|..+..+|...|++++|...|++..+.. +-+..+...+-....+.+
T Consensus 95 ~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~~~~ 144 (170)
T d1p5qa1 95 NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIR 144 (170)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHH
Confidence 77888999999999999999999999998863 225555555544443333
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.66 E-value=0.00016 Score=54.82 Aligned_cols=95 Identities=13% Similarity=0.138 Sum_probs=76.9
Q ss_pred HHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 008265 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL---VEQAMHLFEEMLQAGCEPN-SQCCNILLQA 442 (572)
Q Consensus 367 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~p~-~~~~~~li~~ 442 (572)
..+++.+...+++++|.+.|+.....+.. +..++..+..++.+.++ +++|+.+++++...+..|+ ..++..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~-~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 46788888999999999999999987533 66888888888887554 4579999999887643333 2467888999
Q ss_pred HHHhCCHhHHHHHHHHhhhc
Q 008265 443 CVEACQFDRAFRLFRSWTLS 462 (572)
Q Consensus 443 ~~~~g~~~~A~~~~~~m~~~ 462 (572)
|.+.|++++|.+.|++..+.
T Consensus 82 y~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 99999999999999998764
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.60 E-value=0.018 Score=49.90 Aligned_cols=223 Identities=11% Similarity=0.034 Sum_probs=113.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008265 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGI----CGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299 (572)
Q Consensus 224 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 299 (572)
+..|...+-+.|++++|.+.|++..+.| +...+..|-..|.. ..+...|...+....+.+...-......+..
T Consensus 5 ~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~~~~~ 81 (265)
T d1ouva_ 5 LVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYY 81 (265)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhccccccc
Confidence 3344455555666666666666665544 33344444444443 3456666666666665542111111111111
Q ss_pred H-h--cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008265 300 V-N--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL----AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372 (572)
Q Consensus 300 ~-~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 372 (572)
. . ..+.+.|...++...+.|.. .....+...+.. ......+...+..... ..+...+..|...
T Consensus 82 ~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~L~~~ 151 (265)
T d1ouva_ 82 SGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACD-------LNDGDGCTILGSL 151 (265)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH-------TTCHHHHHHHHHH
T ss_pred cccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhc-------ccccchhhhhhhh
Confidence 0 1 13456666666666554432 222222222222 2334445555554443 2345555555555
Q ss_pred HHc----cccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008265 373 FAD----AKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN----AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444 (572)
Q Consensus 373 ~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 444 (572)
|.. ..+...+...++...+.| +......+-..|.. ..+.++|...|....+.| +...+..|...|.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~ 225 (265)
T d1ouva_ 152 YDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQY 225 (265)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred hccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHH
Confidence 554 445666666666666543 33444444444443 456777777777777665 3444555555554
Q ss_pred H----hCCHhHHHHHHHHhhhcccc
Q 008265 445 E----ACQFDRAFRLFRSWTLSKTQ 465 (572)
Q Consensus 445 ~----~g~~~~A~~~~~~m~~~~~~ 465 (572)
+ ..+.++|.+.|++..+.|..
T Consensus 226 ~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 226 NGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred cCCCCccCHHHHHHHHHHHHHCcCH
Confidence 3 23677777777777666543
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.56 E-value=0.025 Score=50.55 Aligned_cols=275 Identities=9% Similarity=0.025 Sum_probs=140.7
Q ss_pred hhHhhhhhCChhHHHHHHHHhhhcCCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHH
Q 008265 119 GIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIV 198 (572)
Q Consensus 119 ~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll 198 (572)
+...|.+.|.++.|..+|..+... ......+ .+.+++..|.+++.+. .+..+|..+.
T Consensus 20 i~~~c~~~~lye~A~~lY~~~~d~---------~rl~~~~-------v~l~~~~~avd~~~k~-------~~~~~~k~~~ 76 (336)
T d1b89a_ 20 VGDRCYDEKMYDAAKLLYNNVSNF---------GRLASTL-------VHLGEYQAAVDGARKA-------NSTRTWKEVC 76 (336)
T ss_dssp ---------CTTTHHHHHHHTTCH---------HHHHHHH-------HTTTCHHHHHHHHHHH-------TCHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHhCCCH---------HHHHHHH-------HhhccHHHHHHHHHHc-------CCHHHHHHHH
Confidence 444566788888888888765432 1122222 2357777777776644 2345677777
Q ss_pred HHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 008265 199 QLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI 278 (572)
Q Consensus 199 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 278 (572)
.++.+......|..+-............++..|-..|.+++...+++..... -..+...++.++..|++.+ .++..+.
T Consensus 77 ~~l~~~~e~~la~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~-~~kl~e~ 154 (336)
T d1b89a_ 77 FACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK-PQKMREH 154 (336)
T ss_dssp HHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC-HHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC-hHHHHHH
Confidence 7777776665554432222223344456777777777777777777765432 2345566677777777654 2333333
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCC
Q 008265 279 YEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV 358 (572)
Q Consensus 279 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 358 (572)
+..... .- +.+.+..+. .+.+. |.-++-.|.+.|++++|..+.-.
T Consensus 155 l~~~s~---~y--------------~~~k~~~~c---~~~~l------~~elv~Ly~~~~~~~~A~~~~i~--------- 199 (336)
T d1b89a_ 155 LELFWS---RV--------------NIPKVLRAA---EQAHL------WAELVFLYDKYEEYDNAIITMMN--------- 199 (336)
T ss_dssp HHHHST---TS--------------CHHHHHHHH---HTTTC------HHHHHHHHHHTTCHHHHHHHHHH---------
T ss_pred HHhccc---cC--------------CHHHHHHHH---HHcCC------hHHHHHHHHhcCCHHHHHHHHHH---------
Confidence 322211 11 112222111 11111 34455556666666665544321
Q ss_pred CCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchh-----------hHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 359 LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI-----------TWSSLINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 359 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-----------~~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
..++..-....+..+.+..+.+...++.....+. .|+.. .-..++..+.+.+++.-...+++.....
T Consensus 200 ~~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~--~p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~ 277 (336)
T d1b89a_ 200 HPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNH 277 (336)
T ss_dssp STTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTT
T ss_pred cchhhhhHHHHHHHHHccCChHHHHHHHHHHHHc--CHHHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHc
Confidence 1233333344455555555555555544444332 22211 1233444445555555556666555554
Q ss_pred CCCCCHHHHHHHHHHHHHhCCHhHHHHHHHH
Q 008265 428 GCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (572)
Q Consensus 428 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 458 (572)
| +..+.+++...|...++++.-....+.
T Consensus 278 n---~~~vn~al~~lyie~~d~~~l~~~i~~ 305 (336)
T d1b89a_ 278 N---NKSVNESLNNLFITEEDYQALRTSIDA 305 (336)
T ss_dssp C---CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred C---hHHHHHHHHHHHhCcchhHHHHHHHHH
Confidence 4 457889999999999997665555543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.54 E-value=0.00071 Score=55.11 Aligned_cols=71 Identities=11% Similarity=0.118 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHH-----HcCCCCCHHH
Q 008265 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML-----QAGCEPNSQC 435 (572)
Q Consensus 364 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~~~~p~~~~ 435 (572)
..+..+..++.+.|++++|+..++.+.+.... +...|..++.+|.+.|+.++|++.|+++. +.|+.|...+
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 45667777788888888888888888776432 66778888888888888888888888764 3578887655
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.53 E-value=0.0014 Score=50.00 Aligned_cols=102 Identities=12% Similarity=0.131 Sum_probs=72.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCC-Cc-----hhh
Q 008265 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT-PN-----TIT 400 (572)
Q Consensus 327 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~-----~~~ 400 (572)
+..+...+.+.|++++|+..|.+..++ -+.+...+..+..+|.+.|++++|++.++++.+.... +. ..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~-----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~ 81 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKEL-----DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 445667788888899999988888874 2445778888888888889999988888887653111 01 135
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 008265 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQC 435 (572)
Q Consensus 401 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 435 (572)
|..+...+...+++++|.+.|...... .++...
T Consensus 82 ~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~ 114 (128)
T d1elra_ 82 YARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDV 114 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCHHH
Confidence 566666777788888888888877654 344443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.45 E-value=0.0034 Score=50.52 Aligned_cols=97 Identities=12% Similarity=0.001 Sum_probs=78.6
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHCCCC-C-------------chhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008265 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVT-P-------------NTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430 (572)
Q Consensus 365 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p-------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 430 (572)
.+......+.+.|++++|+..|.+..+.-.. + -..+|+.+..+|.+.|++++|+..++...+.. +
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~-p 93 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-S 93 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc-c
Confidence 3444556889999999999999988754111 0 12346678888999999999999999999874 4
Q ss_pred CCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhc
Q 008265 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (572)
Q Consensus 431 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 462 (572)
-+...+..+..+|...|++++|...|++..+.
T Consensus 94 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 94 NNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 47889999999999999999999999988753
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.44 E-value=0.0023 Score=50.46 Aligned_cols=100 Identities=12% Similarity=-0.025 Sum_probs=64.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCC-----------CHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCC
Q 008265 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-----------DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395 (572)
Q Consensus 327 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 395 (572)
+..-...+.+.|++.+|+..|.+...........+ ...+|+.+..+|.+.|++++|++.+....+...
T Consensus 20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p- 98 (153)
T d2fbna1 20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK- 98 (153)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccc-
Confidence 33344566677888888888877765321111111 123556667777777777777777777766532
Q ss_pred CchhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 396 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
.+..+|..+..++...|++++|...|+...+.
T Consensus 99 ~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 99 NNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 25567777777777777777777777777765
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.44 E-value=0.003 Score=49.83 Aligned_cols=96 Identities=10% Similarity=-0.078 Sum_probs=77.9
Q ss_pred HHHHHHHHHccccHHHHHHHHHHHHHCCC----CCc-----------hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008265 366 YSTIVKVFADAKWWQMALKVKEDMLSAGV----TPN-----------TITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430 (572)
Q Consensus 366 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~----~p~-----------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 430 (572)
+..-...+.+.|++.+|+..|.+..+.-. .++ ..+|+.+..+|.+.|++++|++.++...+.. +
T Consensus 20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p 98 (153)
T d2fbna1 20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-K 98 (153)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccccc-c
Confidence 33445677889999999999998875411 111 2356778889999999999999999998875 5
Q ss_pred CCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhc
Q 008265 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (572)
Q Consensus 431 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 462 (572)
.+..+|..+..++...|++++|...|++..+.
T Consensus 99 ~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 99 NNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 57899999999999999999999999987753
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.37 E-value=0.035 Score=47.92 Aligned_cols=221 Identities=14% Similarity=0.037 Sum_probs=153.0
Q ss_pred chHHHHHHHHhcCCChHHHHHhhhcCC--CchhHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 008265 192 DEEFRIVQLCVNKPDVNLAIRYACIVP--RADILFCNFVREFGK----KRDLVSALRAYDASKKHLSSPNMYICRTIIDV 265 (572)
Q Consensus 192 ~~~~~ll~~~~~~g~~~~a~~~~~~~~--~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 265 (572)
..+..|...+.+.+++++|+++|++.. .+...+..|...|.. ..+...|...+....+.+ +......+...
T Consensus 3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~~~ 79 (265)
T d1ouva_ 3 KELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNL 79 (265)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhccccc
Confidence 457778888889999999999999863 344566667777776 678999999999887765 33444444444
Q ss_pred HHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-
Q 008265 266 CGI----CGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN----AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL- 336 (572)
Q Consensus 266 ~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~- 336 (572)
+.. ..+.+.|...++...+.|......... ..... ......+...+...... .+...+..+...|..
T Consensus 80 ~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~-~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~~~~~~~ 155 (265)
T d1ouva_ 80 YYSGQGVSQNTNKALQYYSKACDLKYAEGCASLG-GIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILGSLYDAG 155 (265)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHT
T ss_pred cccccccchhhHHHHHHHhhhhhhhhhhHHHhhc-ccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhhhhhccC
Confidence 433 467899999999998876432222211 22221 13567777777776663 467778888888876
Q ss_pred ---cCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHH
Q 008265 337 ---AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD----AKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409 (572)
Q Consensus 337 ---~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 409 (572)
..+...+...+....+ ..+...+..+...|.. ..++++|+..|....+.| +...+..|...|.
T Consensus 156 ~~~~~~~~~~~~~~~~a~~-------~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~ 225 (265)
T d1ouva_ 156 RGTPKDLKKALASYDKACD-------LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQY 225 (265)
T ss_dssp SSSCCCHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred CCcccccccchhhhhcccc-------ccccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHH
Confidence 3456677777777665 2356666666555554 568999999999999886 4455566666665
Q ss_pred H----cCCHHHHHHHHHHHHHcCC
Q 008265 410 N----AGLVEQAMHLFEEMLQAGC 429 (572)
Q Consensus 410 ~----~g~~~~a~~~~~~m~~~~~ 429 (572)
+ ..+.++|.+.|++..+.|.
T Consensus 226 ~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 226 NGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred cCCCCccCHHHHHHHHHHHHHCcC
Confidence 4 3378889999999888773
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.34 E-value=0.01 Score=47.40 Aligned_cols=132 Identities=14% Similarity=0.075 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCC-----------CHHHHHHHHHHHHccccHHHHHHHHHHHHHCCC
Q 008265 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-----------DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394 (572)
Q Consensus 326 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 394 (572)
.+.-....+.+.|++++|...|.+........ ... ...+|+.+..+|.+.|++++|+..++...+...
T Consensus 17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~-~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p 95 (168)
T d1kt1a1 17 IVKEKGTVYFKGGKYVQAVIQYGKIVSWLEME-YGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 95 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC-CSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-hccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhccc
Confidence 35556677888899999999988877542111 111 123466677788999999999999999988643
Q ss_pred CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCH-hHHHHHHHHhh
Q 008265 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQF-DRAFRLFRSWT 460 (572)
Q Consensus 395 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~ 460 (572)
.+...|..+..++...|++++|...|..+.+.. +.+......+-....+.+.. +...++|..|-
T Consensus 96 -~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 96 -ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQKKAKEHNERDRRTYANMF 160 (168)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 367888899999999999999999999998763 33455555544444444433 33445555543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.32 E-value=0.0031 Score=50.71 Aligned_cols=114 Identities=14% Similarity=0.038 Sum_probs=78.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHhC----------CC-CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCC
Q 008265 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKG----------VL-KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396 (572)
Q Consensus 328 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~----------~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 396 (572)
......+.+.|++++|+..|.++.+..... .+ +.....|..+..+|.+.|++++|+..+.+..+....
T Consensus 31 ~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~- 109 (169)
T d1ihga1 31 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS- 109 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh-
Confidence 344556777888888888887765421100 01 123446677778888899999999999998876432
Q ss_pred chhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008265 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443 (572)
Q Consensus 397 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 443 (572)
+...|..+..++...|++++|...|+...+.. +.+......+..+.
T Consensus 110 ~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~~~ 155 (169)
T d1ihga1 110 NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVK 155 (169)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 56778888889999999999999999888763 33455555554443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.28 E-value=0.00051 Score=66.67 Aligned_cols=215 Identities=7% Similarity=-0.037 Sum_probs=110.9
Q ss_pred cccCCchhhhHHHHHHHhHhhcCChhHHHHHHHHHHhhcCChhHHHhHHHHHHHhhhhHhhhhhCChhHHHHHHHHhhhc
Q 008265 63 VRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL 142 (572)
Q Consensus 63 ~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~ 142 (572)
+...|+- ...+..+...+...|++++| |++++.. +|+... .. .....+. ...+..+++.++...+.
T Consensus 13 ~~l~p~~-a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~------~~-~~e~~Lw-~~~y~~~ie~~r~~~k~ 78 (497)
T d1ya0a1 13 EVLKADM-TDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYAL------DK-KVEQDLW-NHAFKNQITTLQGQAKN 78 (497)
T ss_dssp HHHHGGG-TCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHH------HH-THHHHHH-HHHTHHHHHHHHHHHSC
T ss_pred HHcCCCC-HHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHH------HH-hHHHHHH-HHHHHHHHHHHHHhccc
Confidence 3333443 34445555666667777665 6676655 333111 00 0111111 12245677777776665
Q ss_pred CCCCcchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHhcCCChHHHHHhhhcCCC--c
Q 008265 143 GVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR--A 220 (572)
Q Consensus 143 ~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~ 220 (572)
...++.......+...+. ...+.++.|+..+.... ++.|+....+..+...+.+.|+.+.|...+..... .
T Consensus 79 ~~~~~~~~~~~~~~~~l~-----~a~~~Y~~ai~~l~~~~--~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~ 151 (497)
T d1ya0a1 79 RANPNRSEVQANLSLFLE-----AASGFYTQLLQELCTVF--NVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC 151 (497)
T ss_dssp SSCTTTTHHHHHHHHHHH-----HHHHHHHHHHHHHTC---------------------------------CCHHHHHHH
T ss_pred ccCccHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH--CCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH
Confidence 434433211111111111 11355666665555433 34566677788888889999999998877655321 1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008265 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV 300 (572)
Q Consensus 221 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 300 (572)
...+..+...+...|++++|...|.+..+..+ -+...|+.+...+...|+..+|...|.+..... +|-...+..|...
T Consensus 152 ~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P-~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~ 229 (497)
T d1ya0a1 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVP-SNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKA 229 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHH
Confidence 25677789999999999999999999988642 356799999999999999999999999988764 4566666666554
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.25 E-value=0.0011 Score=50.56 Aligned_cols=95 Identities=12% Similarity=0.096 Sum_probs=77.2
Q ss_pred HHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCC----HHHHHHH
Q 008265 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG--CEPN----SQCCNIL 439 (572)
Q Consensus 366 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~----~~~~~~l 439 (572)
+-.+...|.+.|++++|+..|.+..+.+.. +...|..+..+|.+.|++++|.+.++++.+.. .... ..+|..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 445667899999999999999999987543 67889999999999999999999999987531 1111 2467778
Q ss_pred HHHHHHhCCHhHHHHHHHHhhh
Q 008265 440 LQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 440 i~~~~~~g~~~~A~~~~~~m~~ 461 (572)
...+...+++++|.+.|++...
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHh
Confidence 8888999999999999987653
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.18 E-value=0.00028 Score=68.59 Aligned_cols=100 Identities=10% Similarity=-0.019 Sum_probs=58.6
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHH
Q 008265 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382 (572)
Q Consensus 303 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 382 (572)
++.+.|...+....... ...++..+...+...|++++|...|.+..++ .+-+...|+.|...+...|+..+|
T Consensus 134 ~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l-----~P~~~~~~~~Lg~~~~~~~~~~~A 205 (497)
T d1ya0a1 134 THTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQL-----VPSNGQPYNQLAILASSKGDHLTT 205 (497)
T ss_dssp ---------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTBSHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-----CCCchHHHHHHHHHHHHcCCHHHH
Confidence 45566665555544321 1235556677777778888888888877763 133445777787778788888888
Q ss_pred HHHHHHHHHCCCCCchhhHHHHHHHHHHc
Q 008265 383 LKVKEDMLSAGVTPNTITWSSLINACANA 411 (572)
Q Consensus 383 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 411 (572)
+..|.+..... .|-..++..|...+.+.
T Consensus 206 ~~~y~ral~~~-~~~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 206 IFYYCRSIAVK-FPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHHHHHHSSS-BCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-CCCHHHHHHHHHHHHHh
Confidence 88777776653 34556666666665443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.15 E-value=0.076 Score=47.28 Aligned_cols=234 Identities=10% Similarity=0.085 Sum_probs=114.4
Q ss_pred HHHHHHHHhcCCChHHHHHhhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHH
Q 008265 194 EFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM 273 (572)
Q Consensus 194 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 273 (572)
...+.+.|.+.|.++.|..++..+.. |..++..+.+.++++.|.+++... -+..+|..+...+.+.....
T Consensus 17 ~~~i~~~c~~~~lye~A~~lY~~~~d----~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~~~e~~ 86 (336)
T d1b89a_ 17 IQQVGDRCYDEKMYDAAKLLYNNVSN----FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFR 86 (336)
T ss_dssp ------------CTTTHHHHHHHTTC----HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCCC----HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHhCcHHH
Confidence 34566667777777777777765533 455666667777777777666543 14557777777777666554
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhc--CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008265 274 KSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351 (572)
Q Consensus 274 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 351 (572)
.+ .+...+...+......++..+- |.+++...++...... -..+...++-++..|++.+. ++ +.+.+.
T Consensus 87 la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~-~k---l~e~l~ 156 (336)
T d1b89a_ 87 LA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKP-QK---MREHLE 156 (336)
T ss_dssp HH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCH-HH---HHHHHH
T ss_pred HH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhCh-HH---HHHHHH
Confidence 43 1222222334444444444433 5666666666655432 23455566667777766543 22 222222
Q ss_pred HHHHhCCCCCC--------HHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHH
Q 008265 352 HLEAKGVLKLD--------VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE 423 (572)
Q Consensus 352 ~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 423 (572)
.. .+...+. ...|.-++..|.+.|++++|..++ .++ .++..-....+..+.+..+.+...++...
T Consensus 157 ~~--s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~---i~~--~~~~~~~~~f~e~~~k~~N~e~~~~~i~~ 229 (336)
T d1b89a_ 157 LF--WSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM---MNH--PTDAWKEGQFKDIITKVANVELYYRAIQF 229 (336)
T ss_dssp HH--STTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH---HHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHH
T ss_pred hc--cccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHH---HHc--chhhhhHHHHHHHHHccCChHHHHHHHHH
Confidence 10 0001110 011233444444455555444433 221 23444445556667777777766666665
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHH
Q 008265 424 MLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (572)
Q Consensus 424 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 458 (572)
..+. .|+ ..+.++......-+..+..+.+++
T Consensus 230 yL~~--~p~--~i~~lL~~v~~~~d~~r~V~~~~k 260 (336)
T d1b89a_ 230 YLEF--KPL--LLNDLLMVLSPRLDHTRAVNYFSK 260 (336)
T ss_dssp HHHH--CGG--GHHHHHHHHGGGCCHHHHHHHHHH
T ss_pred HHHc--CHH--HHHHHHHHhccCCCHHHHHHHHHh
Confidence 5543 343 245556565556666666666654
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.10 E-value=0.0078 Score=48.16 Aligned_cols=96 Identities=11% Similarity=-0.031 Sum_probs=76.3
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHC---CCCC-----------chhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008265 365 TYSTIVKVFADAKWWQMALKVKEDMLSA---GVTP-----------NTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430 (572)
Q Consensus 365 ~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p-----------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 430 (572)
.+.-....+.+.|++++|+..|.+.... .... ....|+.+..+|.+.|++++|+..++...+.. +
T Consensus 17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p 95 (168)
T d1kt1a1 17 IVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-S 95 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc-c
Confidence 3445567788999999999999886642 1111 11235567778999999999999999999875 6
Q ss_pred CCHHHHHHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 431 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
.+...|..+..++...|++++|.+.|++...
T Consensus 96 ~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 96 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 126 (168)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6788999999999999999999999998875
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.09 E-value=0.0057 Score=49.07 Aligned_cols=78 Identities=8% Similarity=-0.051 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCchhhHHH
Q 008265 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (572)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 403 (572)
...+..+..++.+.|++++|+..+..+.++. +.+...|..+..+|.+.|++++|++.|+...+.... +......
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-----p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~-n~~~~~~ 150 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-----PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAE 150 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhh-----hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 4456677788899999999999999998742 445678889999999999999999999998886322 3344444
Q ss_pred HHHH
Q 008265 404 LINA 407 (572)
Q Consensus 404 li~~ 407 (572)
+..+
T Consensus 151 l~~~ 154 (169)
T d1ihga1 151 LLKV 154 (169)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.86 E-value=0.0018 Score=56.31 Aligned_cols=122 Identities=11% Similarity=-0.033 Sum_probs=66.5
Q ss_pred HHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHCCCCCch-hhHHHHHHHHHHcCC
Q 008265 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT-ITWSSLINACANAGL 413 (572)
Q Consensus 335 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~ 413 (572)
.+.|++++|+..+++..+. -+-|...+..+...++..|++++|.+.++...+. .|+. ..+..+...+...+.
T Consensus 7 L~~G~l~eAl~~l~~al~~-----~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a~~~ 79 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKA-----SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQA 79 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHT-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhccc
Confidence 3457777777777777652 1345567777777777777777777777777665 3333 333333333333333
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhcc
Q 008265 414 VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463 (572)
Q Consensus 414 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 463 (572)
.+++..-.......+-.++...+......+.+.|+.++|.+.+++..+..
T Consensus 80 ~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 80 RKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129 (264)
T ss_dssp HHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 33332221111111112223333444555677788888888877766544
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.69 E-value=0.0012 Score=57.40 Aligned_cols=119 Identities=14% Similarity=0.039 Sum_probs=82.7
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccccHH
Q 008265 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTIVKVFADAKWWQ 380 (572)
Q Consensus 302 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~ 380 (572)
.|++++|+..+++.++.... |...+..+...++..|++++|...|+...++ .|+ ...+..+...+...+..+
T Consensus 9 ~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l------~P~~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 9 EGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL------FPEYLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp TTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CGGGHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHhccccH
Confidence 38999999999999998755 8899999999999999999999999999884 454 334444444443333333
Q ss_pred HHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 381 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
++..-.......+-.++...+......+.+.|+.++|.+.+.++.+.
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 32221111111111223344455566788899999999999998875
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.66 E-value=0.0085 Score=46.52 Aligned_cols=113 Identities=13% Similarity=0.002 Sum_probs=58.7
Q ss_pred HHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----------cccHHHHHHHHHHHHHCCCCCchhhHHHH
Q 008265 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD----------AKWWQMALKVKEDMLSAGVTPNTITWSSL 404 (572)
Q Consensus 335 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----------~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 404 (572)
-+.+.+++|+..|+...+. -+.+...+..+..++.. .+.+++|+..|++..+.... +..+|..+
T Consensus 8 ~r~~~fe~A~~~~e~al~~-----~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~-~~~a~~~l 81 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKS-----NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCI 81 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhh-----CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch-hhHHHhhH
Confidence 3444566666666666553 13334455555544442 23345666666666654322 34555556
Q ss_pred HHHHHHcC-----------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 405 INACANAG-----------LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 405 i~~~~~~g-----------~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
..+|...| .+++|.+.|+...+. .|+...|..-+..+ ..|.+++.++.+
T Consensus 82 G~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~------~ka~~~~~e~~k 141 (145)
T d1zu2a1 82 GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT------AKAPQLHAEAYK 141 (145)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH------HTHHHHHHHHHH
T ss_pred HHHHHHcccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHHHHH------HHHHHHHHHHHH
Confidence 55555443 246677777777665 56655554444333 344455544443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.65 E-value=0.0086 Score=46.47 Aligned_cols=87 Identities=14% Similarity=0.129 Sum_probs=62.9
Q ss_pred HHccccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHc----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008265 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA----------GLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442 (572)
Q Consensus 373 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 442 (572)
|-+.+.+++|++.|+...+.... +...+..+-.+|... +.+++|...|++..+.. +-+..+|..+..+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~-~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~ 84 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNA 84 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHH
Confidence 45677899999999999887432 556777777776643 45688999999998864 4567888888888
Q ss_pred HHHhCC-----------HhHHHHHHHHhhh
Q 008265 443 CVEACQ-----------FDRAFRLFRSWTL 461 (572)
Q Consensus 443 ~~~~g~-----------~~~A~~~~~~m~~ 461 (572)
|...|+ +++|.+.|++..+
T Consensus 85 y~~~g~~~~~~~~~~~~~~~A~~~~~kal~ 114 (145)
T d1zu2a1 85 YTSFAFLTPDETEAKHNFDLATQFFQQAVD 114 (145)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcccchhhHHHHHHhHHHhhhhhhcccc
Confidence 877653 4566666665543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.54 E-value=0.021 Score=44.75 Aligned_cols=100 Identities=17% Similarity=0.133 Sum_probs=50.9
Q ss_pred HHHHH--HHHHHHcCChHHHHHHHHHHHHHHHhCCCCC-------CHHHHHHHHHHHHccccHHHHHHHHHHHHHC----
Q 008265 326 SYNIL--LKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-------DVFTYSTIVKVFADAKWWQMALKVKEDMLSA---- 392 (572)
Q Consensus 326 ~~~~l--l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---- 392 (572)
+|..+ ...+.+.|++++|+..|.+..++.....-.. ....|+.+..+|.+.|++++|++-+++..+.
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 34444 3445567888888888888876532210000 1235556666666666666666666555431
Q ss_pred -CCCCc-----hhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008265 393 -GVTPN-----TITWSSLINACANAGLVEQAMHLFEEML 425 (572)
Q Consensus 393 -g~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~ 425 (572)
...++ ...++.+..+|...|++++|...|++..
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 01111 1123344445555555555555555443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.25 E-value=0.039 Score=43.17 Aligned_cols=98 Identities=13% Similarity=0.044 Sum_probs=74.0
Q ss_pred HHHHH--HHHHHccccHHHHHHHHHHHHHCCC-CCc----------hhhHHHHHHHHHHcCCHHHHHHHHHHHHHc----
Q 008265 365 TYSTI--VKVFADAKWWQMALKVKEDMLSAGV-TPN----------TITWSSLINACANAGLVEQAMHLFEEMLQA---- 427 (572)
Q Consensus 365 ~~~~l--i~~~~~~g~~~~a~~~~~~m~~~g~-~p~----------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---- 427 (572)
.|..+ ...+.+.|++++|++.|++..+... .|+ ..+|+.+..+|...|++++|.+.+++..+.
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 45555 4556778999999999999876311 121 356888999999999999999999988642
Q ss_pred -CCCCC-----HHHHHHHHHHHHHhCCHhHHHHHHHHhhhc
Q 008265 428 -GCEPN-----SQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (572)
Q Consensus 428 -~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 462 (572)
...++ ...+..+..+|...|++++|.+.|++..+.
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12222 235677888999999999999999987654
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.67 E-value=0.095 Score=36.67 Aligned_cols=69 Identities=12% Similarity=-0.002 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHccccHHHHHHHHHHHHHC
Q 008265 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV-LKLD-VFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (572)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 392 (572)
...+-.+...+.+.|++++|+..|++..+...... ..++ ..+++.+..+|.+.|++++|++.++++.+.
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 34455667777788888888888887766543221 1122 346777777777777777777777777765
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.91 E-value=0.49 Score=35.23 Aligned_cols=15 Identities=20% Similarity=-0.059 Sum_probs=6.8
Q ss_pred cHHHHHHHHHHHHHC
Q 008265 378 WWQMALKVKEDMLSA 392 (572)
Q Consensus 378 ~~~~a~~~~~~m~~~ 392 (572)
+.++|.+.|+...+.
T Consensus 110 d~~~A~~~~~~Aa~~ 124 (133)
T d1klxa_ 110 NEKQAVKTFEKACRL 124 (133)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHC
Confidence 444444444444443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.89 E-value=0.15 Score=35.50 Aligned_cols=76 Identities=17% Similarity=0.083 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHccccHHHHHHHHHHHHHCC-----CCCc-hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HH
Q 008265 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAG-----VTPN-TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN-SQ 434 (572)
Q Consensus 362 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-----~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~ 434 (572)
+...+-.+...+.+.|++++|...|++..+.. ..++ ..+++.+..+|.+.|++++|...++++.+. .|+ ..
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l--~P~~~~ 81 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--DPEHQR 81 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh--CcCCHH
Confidence 34445567788889999999999998876531 1122 356888999999999999999999999886 454 44
Q ss_pred HHHHH
Q 008265 435 CCNIL 439 (572)
Q Consensus 435 ~~~~l 439 (572)
+++.+
T Consensus 82 a~~Nl 86 (95)
T d1tjca_ 82 ANGNL 86 (95)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=93.01 E-value=1.1 Score=32.35 Aligned_cols=139 Identities=12% Similarity=-0.014 Sum_probs=88.1
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHH
Q 008265 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVY 312 (572)
Q Consensus 233 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~a~~~~ 312 (572)
-.|.+++..+++.+.... .+..-||.+|.-....-+-+...++++..-+. .|. .-+++......-+
T Consensus 14 ldG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDl--------s~C~Nlk~vv~C~ 79 (161)
T d1wy6a1 14 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL--------DKCQNLKSVVECG 79 (161)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG--------GGCSCTHHHHHHH
T ss_pred HhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh---cCc--------hhhhcHHHHHHHH
Confidence 347777777777776654 35666777777666666767666666665432 110 0123333333333
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHC
Q 008265 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (572)
Q Consensus 313 ~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 392 (572)
-.+- .+...+...++...+.|+-+.-.++++++.+ .+ +++....-.+..+|.+.|...++-+++.+.-+.
T Consensus 80 ~~~n-----~~se~vdlALd~lv~~~kkd~Ld~i~~~l~k---n~--~i~~~~llkia~A~kkig~~re~nell~~ACe~ 149 (161)
T d1wy6a1 80 VINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK---NN--EVSASILVAIANALRRVGDERDATTLLIEACKK 149 (161)
T ss_dssp HHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC-----C--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHHh---cC--CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 2221 2455666777778888888877777777554 22 567777777788888888888888888888777
Q ss_pred CCC
Q 008265 393 GVT 395 (572)
Q Consensus 393 g~~ 395 (572)
|++
T Consensus 150 G~K 152 (161)
T d1wy6a1 150 GEK 152 (161)
T ss_dssp TCH
T ss_pred hHH
Confidence 764
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=92.99 E-value=1.1 Score=32.33 Aligned_cols=67 Identities=10% Similarity=-0.017 Sum_probs=55.6
Q ss_pred chhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhhccc
Q 008265 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKT 464 (572)
Q Consensus 397 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 464 (572)
+...++..++.+.+.|+-++-.++++.+.+.+ +|+......+..||.+.|...++.+++.+.=+.|.
T Consensus 85 ~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 85 LNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 45567778888899999999999999977765 88888899999999999999999999988776664
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=89.70 E-value=7.4 Score=35.58 Aligned_cols=55 Identities=9% Similarity=0.009 Sum_probs=43.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHhhh
Q 008265 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (572)
Q Consensus 404 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (572)
-+..+...|+...|...+..+... .+......+.....+.|.++.|+....+...
T Consensus 387 ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~~~ 441 (450)
T d1qsaa1 387 RVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAGKL 441 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHHc
Confidence 355677889999999999988754 2555666777888899999999998887753
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=88.56 E-value=3.4 Score=30.22 Aligned_cols=81 Identities=11% Similarity=-0.077 Sum_probs=39.3
Q ss_pred CChHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cccHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHH---
Q 008265 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD----AKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN--- 410 (572)
Q Consensus 338 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~--- 410 (572)
.+.++|...+++..+ .| +...+..|-..|.. ..+.++|.+.|++..+.|. ......|-..|..
T Consensus 37 ~~~~~a~~~~~~aa~---~g----~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~---~~a~~~Lg~~y~~G~g 106 (133)
T d1klxa_ 37 INKQKLFQYLSKACE---LN----SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLND---QDGCLILGYKQYAGKG 106 (133)
T ss_dssp SCHHHHHHHHHHHHH---TT----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSS
T ss_pred cCHHHHHHHHhhhhc---cc----chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccCc---chHHHHHHHHHHcCCc
Confidence 345555555555443 12 33333333333332 3345666666666666542 2233334344433
Q ss_pred -cCCHHHHHHHHHHHHHcC
Q 008265 411 -AGLVEQAMHLFEEMLQAG 428 (572)
Q Consensus 411 -~g~~~~a~~~~~~m~~~~ 428 (572)
..+.++|.++|+...+.|
T Consensus 107 v~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 107 VVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp SCCCHHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHHHHHCC
Confidence 235666666666666555
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.77 E-value=3.8 Score=29.49 Aligned_cols=50 Identities=12% Similarity=0.149 Sum_probs=24.3
Q ss_pred cHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008265 378 WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (572)
Q Consensus 378 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 427 (572)
++++++.+|+++.+.+..-....+..|.-+|.+.|++++|.+.++.+.+.
T Consensus 53 d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 53 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 34455555555554321101234444555555555555555555555554
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=83.07 E-value=3.9 Score=27.78 Aligned_cols=46 Identities=15% Similarity=0.119 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008265 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (572)
Q Consensus 307 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 352 (572)
++.+-++.+......|++....+.+.+|-+.+++..|.++|+-++.
T Consensus 24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~ 69 (105)
T d1v54e_ 24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 69 (105)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4444555555566778888888888888888888888888887775
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.89 E-value=6.5 Score=28.22 Aligned_cols=67 Identities=9% Similarity=-0.039 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHccccHHHHHHHHHHHHHC
Q 008265 321 MADMASYNILLKACCLAGNT---VLAQEIYGEVKHLEAKGVLKLDV-FTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (572)
Q Consensus 321 ~~~~~~~~~ll~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 392 (572)
.++..|--...-++.+..+. ++++.+++++.+. + +.+. ..+-.|.-+|.+.|++++|.+.++.+.+.
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~---~--p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---A--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH---C--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc---C--chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 34555555555555555443 3555566555531 1 1122 24444555566666666666666666654
|