Citrus Sinensis ID: 008267

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570--
MSSKINHHHQNDKTNGQIFPQPCPHLADFHARNGTKPFRAIQDCLHIKPPGGRAAIRRDSSEVPRCGVCGDSSCPRLYACMACAAVSCHVPPHSSHVAIHATKTSSACSHEIAVDVDRAELFCCACRDQVYDRDFDAAVVLAHTTSIIQSSKPENLRKRRRIDYRPWSPDLRERSLMVNNASPIDSMSSSNGDLPRGLRGLNNLGNTCFMNSVLQALFHTPPLRNYFLSDRHNRYYCQSKNGVRLCLACDLDTMFSAIFCGDRMPYSPAKFLYSWWRHASNLASYEQQDAHEFFISMLDGIHEKVEKDQHKPRSQGNGDCCIAHRVFSGILRSDVMCMACGFTSTTFDPCVDFSLDLEPNQGSSMKTSSTKSNHSCNCEADGMNSSQNCGISTLMGCLDRFTRPERLGSDQKFFCQQCQVRQESLKQMSIRKLPLVSCFHIKRFEHSSVRKMSRKVDRYLQFPLSLDMAPYLSSSILRSRFGNRFFPFDGDESNTLNEPSSEFELFAVVTHTGKLDAGHYVTYLRLSNKWYKCDDAWITEVNENTVRAAQGYMMFYVQKMLYYKASEKQGTS
cccccccccccccccccccccccccHHHHHHHcccccHHHHHHHcccccccccccccccccccccccccccccccccEEEEEcccccccccccccHHHHHHHHccccccccEEEEcccccEEEcccccEEccccHHHHHHHHccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHccHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEEEEEcEEEEcccccEEccccccEEEEEEcccccccccccccccccccccccccccccccccccccHHHHHHHcccccEEccccccccccccccccEEEEEEccccccEEEEEEcccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEccccccccEEEEEEccccEEEEEccEEEEEcHHHHcccccEEEEEEEEccccccccccccc
cccccccccccccccccccccccHHHHHHHHHccccccEEEEEEEEEcccccccccccccccccccccccccccccEEEEEEEEEEccccccccccHHHHHHHHHcccccEEEEEEcccEEEEEEccccEccccHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHccccccccccccccccccccccccEccccccHHHHHHHHHHHccHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccccccccccEEHHHHccccccEEEEEEcccEcEEEcccEEEEcccccccccccccccccccccccccccccccccccccccHHHHHHHHccHHHcccccccccHHHHHHHHHHHEEEHHccccEEEEEEEEEEcccccccccEEEEEEEcccEccccccccccccccccccccccccccccccccccccEEEEEEEEEEccccccccEEEEEEEcccEEEEcccEEEcccHHHHccccEEEEEEEEccccccHHHccccc
msskinhhhqndktngqifpqpcphladfharngtkpfraiqdclhikppggraairrdssevprcgvcgdsscprlYACMAcaavschvpphsshvaihatktssacsheIAVDVDRAELFCcacrdqvydrdfDAAVVLAHTTSiiqsskpenlrkrrridyrpwspdlrerslmvnnaspidsmsssngdlprglrglnnlgntcFMNSVLQalfhtpplrnyflsdrhnryycqskngvrLCLACDLdtmfsaifcgdrmpyspakfLYSWWRHASNLASYEQQDAHEFFISMLDGIHEkvekdqhkprsqgngdcciahRVFSGilrsdvmcmacgftsttfdpcvdfsldlepnqgssmktsstksnhscnceadgmnssqncgistlmgcldrftrperlgsdqkffCQQCQVRQESLKqmsirklplvscfhikrfeHSSVRKMSRKVdrylqfplsldmapylsssilrsrfgnrffpfdgdesntlnepsseFELFAVVTHTGKLDAGHYVTYLRlsnkwykcddaWITEVNENTVRAAQGYMMFYVQKMLYYKASEKQGTS
msskinhhhqndktngqiFPQPCPHLADFHARNGTKPFRAIQDCLHIKPPGGRAairrdssevprCGVCGDSSCPRLYACMACAAVSCHVPPHSSHVAIHATKTSSACSHEIAVDVDRAELFCCACRDQVYDRDFDAAVVLAhttsiiqsskpenlrkrrridyrpwspdlrersLMVNNASPIDSMSSSNGDLPRGLRGLNNLGNTCFMNSVLQALFHTPPLRNYFLSDRHNRYYCQSKNGVRLCLACDLDTMFSAIFCGDRMPYSPAKFLYSWWRHASNLASYEQQDAHEFFISMLDGIHEKVEKDQHkprsqgngdcCIAHRVFSGILRSDVMCMACGFTSTTFDPCVDFSLDLEPNQGSSMKTSSTKSNHSCNCEADGMNSSQNCGISTLMGCLDRFTRPERLGSDQKFFCQQCQVRQEslkqmsirklpLVSCFHIKrfehssvrkmsrkVDRYLQFPLSLDMAPYLSSSILRSRFGNRFFPFDGDESNTLNEPSSEFELFAVVTHTGKLDAGHYVTYLRLSNKWYKCDDAWITEVNENTVRAAQGYMMFYVQKMLYYKASEKQGTS
MSSKINHHHQNDKTNGQIFPQPCPHLADFHARNGTKPFRAIQDCLHIKPPGGRAAIRRDSSEVPRCGVCGDSSCPRLYACMACAAVSCHVPPHSSHVAIHATKTSSACSHEIAVDVDRAELFCCACRDQVYDRDFDAAVVLAHTTSIIQSSKPENLRKRRRIDYRPWSPDLRERSLMVNNASPIDSMSSSngdlprglrglnnlgnTCFMNSVLQALFHTPPLRNYFLSDRHNRYYCQSKNGVRLCLACDLDTMFSAIFCGDRMPYSPAKFLYSWWRHASNLASYEQQDAHEFFISMLDGIHEKVEKDQHKPRSQGNGDCCIAHRVFSGILRSDVMCMACGFTSTTFDPCVDFSLDLEPNQGSSMKTSSTKSNHSCNCEADGMNSSQNCGISTLMGCLDRFTRPERLGSDQKFFCQQCQVRQESLKQMSIRKLPLVSCFHIKRFEHSSVRKMSRKVDRYLQFPLSLDMAPYLSSSILRSRFGNRFFPFDGDESNTLNEPSSEFELFAVVTHTGKLDAGHYVTYLRLSNKWYKCDDAWITEVNENTVRAAQGYMMFYVQKMLYYKASEKQGTS
*********************PCPHLADFHARNGTKPFRAIQDCLHIKPPG***AI*****EVPRCGVCGDSSCPRLYACMACAAVSCHVPPHSSHVAIHATKTSSACSHEIAVDVDRAELFCCACRDQVYDRDFDAAVVLAHTTSII*************************************************LRGLNNLGNTCFMNSVLQALFHTPPLRNYFLSDRHNRYYCQSKNGVRLCLACDLDTMFSAIFCGDRMPYSPAKFLYSWWRHASNLASYEQQDAHEFFISMLDGIH***************GDCCIAHRVFSGILRSDVMCMACGFTSTTFDPCVDFSLD********************************CGISTLMGCLDRFTRPERLGSDQKFFCQQCQVRQESLKQMSIRKLPLVSCFHIKRFEHSSVRKMSRKVDRYLQFPLSLDMAPYLSSSILRSRFGNRFFPFD************EFELFAVVTHTGKLDAGHYVTYLRLSNKWYKCDDAWITEVNENTVRAAQGYMMFYVQKMLYYK********
********************QPCPHLADFHARNGTKPFRAIQDCLHIKP******************VCGDSSCPRLYACMACAAVSCHVPPHSSH********SSACSHEIAVDVDRAELFCCACRDQVYDRDFDAAVV***********************YR**********************SSSNGDLPRGLRGLNNLGNTCFMNSVLQALFHTPPLRNYFLSDRHNRYY****NGVRLCLACDLDTMFSAIFCGDRMPYSPAKFLYSWWRHASNLASYEQQDAHEFFISMLDGIHEK************NGDCCIAHRVFSGILRSDVMCMACGFTSTTFDPCVDFSLDLE***************************SQNCGISTLMGCLDRFTRPERLGSDQKFFCQQCQVRQESLKQMSIRKLPLVSCFHIKRFEHSSVRKMSRKVDRYLQFPLSLDMAPYLSSSI********************NEPSSEFELFAVVTHTGKLDAGHYVTYLRLSNKWYKCDDAWITEVNENTVRAAQGYMMFY****************
************KTNGQIFPQPCPHLADFHARNGTKPFRAIQDCLHIKPPGGRAAIRRDSSEVPRCGVCGDSSCPRLYACMACAAVSCHVPPHSSHVAIHATKTSSACSHEIAVDVDRAELFCCACRDQVYDRDFDAAVVLAHTTSIIQSSKPENLRKRRRIDYRPWSPDLRERSLMVNNASPIDSMSSSNGDLPRGLRGLNNLGNTCFMNSVLQALFHTPPLRNYFLSDRHNRYYCQSKNGVRLCLACDLDTMFSAIFCGDRMPYSPAKFLYSWWRHASNLASYEQQDAHEFFISMLDGIHEKV***********NGDCCIAHRVFSGILRSDVMCMACGFTSTTFDPCVDFSLDLEPN***************CNCEADGMNSSQNCGISTLMGCLDRFTRPERLGSDQKFFCQQCQVRQESLKQMSIRKLPLVSCFHIKRFEHSSVRKMSRKVDRYLQFPLSLDMAPYLSSSILRSRFGNRFFPFDGDESNTLNEPSSEFELFAVVTHTGKLDAGHYVTYLRLSNKWYKCDDAWITEVNENTVRAAQGYMMFYVQKMLYYK********
*******************PQPCPHLADFHARNGTKPFRAIQDCLHIKPPGGRAAIRRDSSEVPRCGVCGDSSCPRLYACMACAAVSCHVPPHSSHVAIHATKTSSACSHEIAVDVDRAELFCCACRDQVYDRDFDAAVVLAHTTSIIQSS****************************************GDLPRGLRGLNNLGNTCFMNSVLQALFHTPPLRNYFLSDRHNRYYCQSKNGVRLCLACDLDTMFSAIFCGDRMPYSPAKFLYSWWRHASNLASYEQQDAHEFFISMLDGIHEKVEKDQHKPRSQGNGDCCIAHRVFSGILRSDVMCMACGFTSTTFDPCVDFSLDLE********************************ISTLMGCLDRFTRPERLGSDQKFFCQQCQVRQESLKQMSIRKLPLVSCFHIKRFEHSSVRKMSRKVDRYLQFPLSLDMAPYLS************************EPSSEFELFAVVTHTGKLDAGHYVTYLRLSNKWYKCDDAWITEVNENTVRAAQGYMMFYVQKMLYYK********
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MSSKINHHHQNDKTNGQIFPQPCPHLADFHARNGTKPFRAIQDCLHIKPPGGRAAIRRDSSEVPRCGVCGDSSCPRLYACMACAAVSCHVPPHSSHVAIHATKTSSACSHEIAVDVDRAELFCCACRDQVYDRDFDAAVVLAHTTSIIQSSKPENLRKRRRIDYRPWSPDLRERSLMVNNASPIDSMSSSNGDLPRGLRGLNNLGNTCFMNSVLQALFHTPPLRNYFLSDRHNRYYCQSKNGVRLCLACDLDTMFSAIFCGDRMPYSPAKFLYSWWRHASNLASYEQQDAHEFFISMLDGIHEKVEKDQHKPRSQGNGDCCIAHRVFSGILRSDVMCMACGFTSTTFDPCVDFSLDLEPNQGSSMKTSSTKSNHSCNCEADGMNSSQNCGISTLMGCLDRFTRPERLGSDQKFFCQQCQVRQESLKQMSIRKLPLVSCFHIKRFEHSSVRKMSRKVDRYLQFPLSLDMAPYLSSSILRSRFGNRFFPFDGDESNTLNEPSSEFELFAVVTHTGKLDAGHYVTYLRLSNKWYKCDDAWITEVNENTVRAAQGYMMFYVQKMLYYKASEKQGTS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query572 2.2.26 [Sep-21-2011]
Q9LEW0557 Ubiquitin carboxyl-termin yes no 0.909 0.933 0.495 1e-137
Q9UPT9525 Ubiquitin carboxyl-termin yes no 0.881 0.96 0.382 5e-96
Q5DU02525 Ubiquitin carboxyl-termin yes no 0.877 0.956 0.386 1e-95
P0C8Z3514 Ubiquitin carboxyl-termin yes no 0.881 0.980 0.381 5e-95
A6H8I0506 Ubiquitin carboxyl-termin yes no 0.870 0.984 0.381 2e-93
Q6GNI6523 Ubiquitin carboxyl-termin N/A no 0.895 0.978 0.370 1e-92
Q6DCJ1523 Ubiquitin carboxyl-termin N/A no 0.895 0.978 0.370 2e-92
Q70EK9711 Ubiquitin carboxyl-termin no no 0.868 0.699 0.355 1e-84
A6NNY8438 Ubiquitin carboxyl-termin no no 0.730 0.954 0.400 8e-83
Q8CEG8438 Ubiquitin carboxyl-termin no no 0.722 0.942 0.408 9e-83
>sp|Q9LEW0|UBP22_ARATH Ubiquitin carboxyl-terminal hydrolase 22 OS=Arabidopsis thaliana GN=UBP22 PE=2 SV=1 Back     alignment and function desciption
 Score =  489 bits (1260), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 277/559 (49%), Positives = 355/559 (63%), Gaps = 39/559 (6%)

Query: 20  PQPCPHLADFHARNGTKPFRAIQDCLHIKPPGGRAAIRRDSSEVPRCGVCGDSSCPRLYA 79
           P PC HL+D+  R GT  +++  +         R  I+    ++PRC  C      RLY 
Sbjct: 11  PDPCNHLSDYKLRYGTDGYKSFNNLFRCFN-DARIKIKLQGIDIPRCSYCSVYQ-KRLYI 68

Query: 80  CMACAAVSCHVPPHSSHVAIHATKTSSACSHEIAVDVDRAELFCCACRDQVYDRDFDAAV 139
           C+ C ++SC     SSH+ +H   T     H+IA+DV+R+EL+CCAC DQVYD +FD  V
Sbjct: 69  CLICRSISC-----SSHILLH---TQLNKGHDIAIDVERSELYCCACIDQVYDSEFDEVV 120

Query: 140 VLAHTTSIIQSSK------PENLRKRRRIDYRPWSPDLRERSLMVNNASPIDSMSSSNGD 193
           V      +  S K           K+RR+D    S  +   + +V   SP D        
Sbjct: 121 VSKQLFGLGMSVKSGADVVAVRSNKKRRLD----SQLIIGSNFLV---SPRDR--REKWT 171

Query: 194 LPRGLRGLNNLGNTCFMNSVLQALFHTPPLRNYFLSDRHNRYYCQSKNGVRLCLACDLDT 253
            P GLRGLNNLG+TCFMN+VLQAL H PPLRN++LS +HNR  C  +    LCL CDLD 
Sbjct: 172 FPLGLRGLNNLGSTCFMNAVLQALVHAPPLRNFWLSGQHNRDLCPRRTMGLLCLPCDLDV 231

Query: 254 MFSAIFCGDRMPYSPAKFLYSWWRHASNLASYEQQDAHEFFISMLDGIHEKVEKDQHKPR 313
           +FSA+F GDR PYSPA  LYSWW+H++NLA+YEQQD+HEFFIS+LD IHE   + + K  
Sbjct: 232 IFSAMFSGDRTPYSPAHLLYSWWQHSTNLATYEQQDSHEFFISLLDRIHEN--EGKSKCL 289

Query: 314 SQGNGDC-CIAHRVFSGILRSDVMCMACGFTSTTFDPCVDFSLDLEPNQGSSMKTSSTKS 372
            Q N +C CI H+ FSG+LRSDV C  CG TSTT+DP +D SL L+   G S      K+
Sbjct: 290 YQDNEECQCITHKAFSGLLRSDVTCTTCGSTSTTYDPFIDISLTLDSMNGFS-PADCRKN 348

Query: 373 NHSCNCEADGMNSSQNCGISTLMGCLDRFTRPERLGSDQKFFCQQCQVRQESLKQMSIRK 432
            +S          S N  + TL GCLD FTR E+LG DQK  CQ C  ++ES KQMSIR+
Sbjct: 349 RYS-------GGPSVNAIMPTLSGCLDFFTRSEKLGPDQKLNCQSCGEKRESSKQMSIRR 401

Query: 433 LPLVSCFHIKRFEHSSVRKMSRKVDRYLQFPLSLDMAPYLSSSILRSRFGNRFFPFDGD- 491
           LPL+ C H+KRFEHS  RK SRK+D YLQ+P  L+M+PYLSSSI+  RFGNR F FDG+ 
Sbjct: 402 LPLLLCLHVKRFEHSLTRKTSRKIDSYLQYPFRLNMSPYLSSSIIGKRFGNRIFAFDGEG 461

Query: 492 --ESNTLNEPSSEFELFAVVTHTGKLDAGHYVTYLRLSNKWYKCDDAWITEVNENTVRAA 549
             +S++ + PS+EFE+FAVVTH G L++GHYVTYLRL   WY+CDDAWI EV E  VR  
Sbjct: 462 EYDSSSSSSPSAEFEIFAVVTHKGMLESGHYVTYLRLKGLWYRCDDAWINEVEEEVVRGC 521

Query: 550 QGYMMFYVQKMLYYKASEK 568
           + YM+FY Q+ +  KA ++
Sbjct: 522 ECYMLFYAQETVIQKAHKE 540
Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2
>sp|Q9UPT9|UBP22_HUMAN Ubiquitin carboxyl-terminal hydrolase 22 OS=Homo sapiens GN=USP22 PE=1 SV=2 Back     alignment and function description
>sp|Q5DU02|UBP22_MOUSE Ubiquitin carboxyl-terminal hydrolase 22 OS=Mus musculus GN=Usp22 PE=2 SV=2 Back     alignment and function description
>sp|P0C8Z3|UBP22_BOVIN Ubiquitin carboxyl-terminal hydrolase 22 OS=Bos taurus GN=USP22 PE=2 SV=1 Back     alignment and function description
>sp|A6H8I0|UBP22_DANRE Ubiquitin carboxyl-terminal hydrolase 22 OS=Danio rerio GN=usp22 PE=2 SV=1 Back     alignment and function description
>sp|Q6GNI6|UB22A_XENLA Ubiquitin carboxyl-terminal hydrolase 22-A OS=Xenopus laevis GN=usp22-a PE=2 SV=1 Back     alignment and function description
>sp|Q6DCJ1|UB22B_XENLA Ubiquitin carboxyl-terminal hydrolase 22-B OS=Xenopus laevis GN=usp22-b PE=2 SV=2 Back     alignment and function description
>sp|Q70EK9|UBP51_HUMAN Ubiquitin carboxyl-terminal hydrolase 51 OS=Homo sapiens GN=USP51 PE=2 SV=1 Back     alignment and function description
>sp|A6NNY8|UBP27_HUMAN Ubiquitin carboxyl-terminal hydrolase 27 OS=Homo sapiens GN=USP27X PE=2 SV=3 Back     alignment and function description
>sp|Q8CEG8|UBP27_MOUSE Ubiquitin carboxyl-terminal hydrolase 27 OS=Mus musculus GN=Usp27 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query572
255579847577 Ubiquitin carboxyl-terminal hydrolase, p 0.944 0.935 0.791 0.0
449443277602 PREDICTED: ubiquitin carboxyl-terminal h 0.986 0.936 0.752 0.0
359484748587 PREDICTED: ubiquitin carboxyl-terminal h 0.954 0.930 0.774 0.0
224142545566 predicted protein [Populus trichocarpa] 0.942 0.952 0.769 0.0
356562949592 PREDICTED: ubiquitin carboxyl-terminal h 0.977 0.944 0.718 0.0
356548528594 PREDICTED: ubiquitin carboxyl-terminal h 0.977 0.941 0.704 0.0
414585137563 TPA: hypothetical protein ZEAMMB73_27550 0.933 0.948 0.609 0.0
242077396565 hypothetical protein SORBIDRAFT_06g03058 0.933 0.945 0.612 0.0
357162360563 PREDICTED: ubiquitin carboxyl-terminal h 0.938 0.953 0.609 0.0
90399346562 H0811D08.10 [Oryza sativa Indica Group] 0.931 0.948 0.607 0.0
>gi|255579847|ref|XP_002530760.1| Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis] gi|223529676|gb|EEF31620.1| Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  929 bits (2402), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/571 (79%), Positives = 488/571 (85%), Gaps = 31/571 (5%)

Query: 22  PCPHLADFHARNGTKPFRAIQDCLHIKPPGGRAAIRRDSSEVPRCGVCGDSSCPRLYACM 81
           PCPHLA+FH+RNG+KPFR +QDCL IKPPGGRAAIRR+ SEVPRCG CG+SS PRLYAC+
Sbjct: 12  PCPHLAEFHSRNGSKPFRFLQDCLRIKPPGGRAAIRREPSEVPRCGACGESSRPRLYACV 71

Query: 82  ACAAVSCHVPPHSSHVAIHATKTSSACSHEIAVDVDRAELFCCACRDQVYDRDFDAAVVL 141
            CA +SCH PP  SH A HAT       HEIAVDVDRAELFCCACRDQVYDRDFDAAVVL
Sbjct: 72  TCATISCHAPPGPSHAAAHATSPG----HEIAVDVDRAELFCCACRDQVYDRDFDAAVVL 127

Query: 142 AHTTSI------IQSSKPENLRKRRRIDYRPWSPDLRERSLMVNNASPIDSMSSSNGDLP 195
           + TTS       I SSKPENLRKRRR+DYRPW PD+R+R LM + +SP++  S    ++P
Sbjct: 128 SQTTSFKAAGNAILSSKPENLRKRRRVDYRPWRPDVRDRMLMESGSSPLEYSS----EMP 183

Query: 196 RGLRGLNNLGNTCFMNSVLQALFHTPPLRNYFLSDRHNRYYCQS-KNGV----------- 243
           RGLRGLNNLGNTCFMNSVLQAL HTPPLRNYFLSDRHNRYYCQ  KNGV           
Sbjct: 184 RGLRGLNNLGNTCFMNSVLQALLHTPPLRNYFLSDRHNRYYCQQMKNGVNNGAFNNNSNN 243

Query: 244 ---RLCLACDLDTMFSAIFCGDRMPYSPAKFLYSWWRHASNLASYEQQDAHEFFISMLDG 300
              +LCLACDLD MFSA+F GDRMPYSPAKFLYSWW+HASNLASYEQQDAHEFFISMLDG
Sbjct: 244 KNAKLCLACDLDAMFSAVFSGDRMPYSPAKFLYSWWQHASNLASYEQQDAHEFFISMLDG 303

Query: 301 IHEK--VEKDQHKPRSQGNGDCCIAHRVFSGILRSDVMCMACGFTSTTFDPCVDFSLDLE 358
           IHEK  VEKD  KP SQG+GDCCIAHR+FSGILRSDVMCMACGFTSTT+DPCVD SLDLE
Sbjct: 304 IHEKIKVEKDLCKPHSQGHGDCCIAHRIFSGILRSDVMCMACGFTSTTYDPCVDISLDLE 363

Query: 359 PNQGSSMKTSSTKSNHSCNCEADGMNSSQNCGISTLMGCLDRFTRPERLGSDQKFFCQQC 418
           P QG   K +S K++HSCN E D M +SQNCGISTLMGCLDRFTRPERLGSDQKFFCQQC
Sbjct: 364 PQQGGFGKHASMKAHHSCNGETDCMGASQNCGISTLMGCLDRFTRPERLGSDQKFFCQQC 423

Query: 419 QVRQESLKQMSIRKLPLVSCFHIKRFEHSSVRKMSRKVDRYLQFPLSLDMAPYLSSSILR 478
           QVRQESLKQMSIRKLPLV CFHIKRFEHSS+RKMSRKVDRYLQFP SLDM PYLSSSILR
Sbjct: 424 QVRQESLKQMSIRKLPLVYCFHIKRFEHSSIRKMSRKVDRYLQFPFSLDMTPYLSSSILR 483

Query: 479 SRFGNRFFPFDGDESNTLNEPSSEFELFAVVTHTGKLDAGHYVTYLRLSNKWYKCDDAWI 538
           +RFGNR FPFDGDE +  NE SSEFELFAVVTHTGKLDAGHYVTYLRL+N+WYKCDDAWI
Sbjct: 484 NRFGNRIFPFDGDEPDASNEMSSEFELFAVVTHTGKLDAGHYVTYLRLNNQWYKCDDAWI 543

Query: 539 TEVNENTVRAAQGYMMFYVQKMLYYKASEKQ 569
           T+VNEN VRAAQGYM+FYVQK+LYYKASE Q
Sbjct: 544 TQVNENIVRAAQGYMIFYVQKVLYYKASENQ 574

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449443277|ref|XP_004139406.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Cucumis sativus] gi|449518463|ref|XP_004166261.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359484748|ref|XP_003633155.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224142545|ref|XP_002324616.1| predicted protein [Populus trichocarpa] gi|222866050|gb|EEF03181.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356562949|ref|XP_003549730.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Glycine max] Back     alignment and taxonomy information
>gi|356548528|ref|XP_003542653.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Glycine max] Back     alignment and taxonomy information
>gi|414585137|tpg|DAA35708.1| TPA: hypothetical protein ZEAMMB73_275507 [Zea mays] Back     alignment and taxonomy information
>gi|242077396|ref|XP_002448634.1| hypothetical protein SORBIDRAFT_06g030580 [Sorghum bicolor] gi|241939817|gb|EES12962.1| hypothetical protein SORBIDRAFT_06g030580 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|357162360|ref|XP_003579384.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|90399346|emb|CAH68425.1| H0811D08.10 [Oryza sativa Indica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query572
TAIR|locus:2183760557 UBP22 "ubiquitin-specific prot 0.909 0.933 0.481 3.1e-131
DICTYBASE|DDB_G0271798 836 DDB_G0271798 "putative ubiquit 0.269 0.184 0.385 2.5e-83
UNIPROTKB|F1PHD5514 USP51 "Ubiquitin carboxyl-term 0.846 0.941 0.375 1.3e-82
UNIPROTKB|F1NG36483 USP22 "Ubiquitin carboxyl-term 0.816 0.966 0.368 2.8e-82
UNIPROTKB|F1RW22523 LOC100515460 "Ubiquitin carbox 0.840 0.919 0.370 2.8e-82
UNIPROTKB|Q70EK9711 USP51 "Ubiquitin carboxyl-term 0.576 0.464 0.424 3.2e-81
UNIPROTKB|F1RTR5710 LOC100519179 "Ubiquitin carbox 0.573 0.461 0.422 5.8e-80
UNIPROTKB|F1MTL6438 USP27X "Ubiquitin carboxyl-ter 0.730 0.954 0.395 1e-75
RGD|1310354525 Usp22 "ubiquitin specific pept 0.660 0.72 0.410 5.7e-75
MGI|MGI:2144157525 Usp22 "ubiquitin specific pept 0.660 0.72 0.410 5.7e-75
TAIR|locus:2183760 UBP22 "ubiquitin-specific protease 22" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1287 (458.1 bits), Expect = 3.1e-131, P = 3.1e-131
 Identities = 269/559 (48%), Positives = 346/559 (61%)

Query:    20 PQPCPHLADFHARNGTKPFRAIQDCLHIKPPGGRAAIRRDSSEVPRCGVCGDSSCPRLYA 79
             P PC HL+D+  R GT  +++  +         R  I+    ++PRC  C      RLY 
Sbjct:    11 PDPCNHLSDYKLRYGTDGYKSFNNLFRCFNDA-RIKIKLQGIDIPRCSYCSVYQ-KRLYI 68

Query:    80 CMACAAVSCHVPPHSSHVAIHATKTSSACSHEIAVDVDRAELFCCACRDQVYDRDFDAAV 139
             C+ C ++SC     SSH+ +H T+ +    H+IA+DV+R+EL+CCAC DQVYD +FD  V
Sbjct:    69 CLICRSISC-----SSHILLH-TQLNKG--HDIAIDVERSELYCCACIDQVYDSEFDEVV 120

Query:   140 VLAHTTSIIQSSKPE------NLRKRRRIDYRPWSPDLRERSLMVNNASPIDSMSSSXXX 193
             V      +  S K           K+RR+D    S  +   + +V   SP D        
Sbjct:   121 VSKQLFGLGMSVKSGADVVAVRSNKKRRLD----SQLIIGSNFLV---SPRDRREK--WT 171

Query:   194 XXXXXXXXXXXXXTCFMNSVLQALFHTPPLRNYFLSDRHNRYYCQSKNGVRLCLACDLDT 253
                          TCFMN+VLQAL H PPLRN++LS +HNR  C  +    LCL CDLD 
Sbjct:   172 FPLGLRGLNNLGSTCFMNAVLQALVHAPPLRNFWLSGQHNRDLCPRRTMGLLCLPCDLDV 231

Query:   254 MFSAIFCGDRMPYSPAKFLYSWWRHASNLASYEQQDAHEFFISMLDGIHEKVEKDQHKPR 313
             +FSA+F GDR PYSPA  LYSWW+H++NLA+YEQQD+HEFFIS+LD IHE   K   K  
Sbjct:   232 IFSAMFSGDRTPYSPAHLLYSWWQHSTNLATYEQQDSHEFFISLLDRIHENEGKS--KCL 289

Query:   314 SQGNGDC-CIAHRVFSGILRSDVMCMACGFTSTTFDPCVDFSLDLEPNQGSSMKTSSTKS 372
              Q N +C CI H+ FSG+LRSDV C  CG TSTT+DP +D SL L+   G S      K+
Sbjct:   290 YQDNEECQCITHKAFSGLLRSDVTCTTCGSTSTTYDPFIDISLTLDSMNGFS-PADCRKN 348

Query:   373 NHSCNCEADGMNSSQNCGISTLMGCLDRFTRPERLGSDQKFFCQQCQVRQESLKQMSIRK 432
              +S      G   S N  + TL GCLD FTR E+LG DQK  CQ C  ++ES KQMSIR+
Sbjct:   349 RYS------G-GPSVNAIMPTLSGCLDFFTRSEKLGPDQKLNCQSCGEKRESSKQMSIRR 401

Query:   433 LPLVSCFHIKRFEHSSVRKMSRKVDRYLQFPLSLDMAPYLSSSILRSRFGNRFFPFDGD- 491
             LPL+ C H+KRFEHS  RK SRK+D YLQ+P  L+M+PYLSSSI+  RFGNR F FDG+ 
Sbjct:   402 LPLLLCLHVKRFEHSLTRKTSRKIDSYLQYPFRLNMSPYLSSSIIGKRFGNRIFAFDGEG 461

Query:   492 --ESNTLNEPSSEFELFAVVTHTGKLDAGHYVTYLRLSNKWYKCDDAWITEVNENTVRAA 549
               +S++ + PS+EFE+FAVVTH G L++GHYVTYLRL   WY+CDDAWI EV E  VR  
Sbjct:   462 EYDSSSSSSPSAEFEIFAVVTHKGMLESGHYVTYLRLKGLWYRCDDAWINEVEEEVVRGC 521

Query:   550 QGYMMFYVQKMLYYKASEK 568
             + YM+FY Q+ +  KA ++
Sbjct:   522 ECYMLFYAQETVIQKAHKE 540
GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA
GO:0004843 "ubiquitin-specific protease activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
DICTYBASE|DDB_G0271798 DDB_G0271798 "putative ubiquitin carboxyl-terminal hydrolase (UCH)" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|F1PHD5 USP51 "Ubiquitin carboxyl-terminal hydrolase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1NG36 USP22 "Ubiquitin carboxyl-terminal hydrolase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1RW22 LOC100515460 "Ubiquitin carboxyl-terminal hydrolase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q70EK9 USP51 "Ubiquitin carboxyl-terminal hydrolase 51" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1RTR5 LOC100519179 "Ubiquitin carboxyl-terminal hydrolase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1MTL6 USP27X "Ubiquitin carboxyl-terminal hydrolase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1310354 Usp22 "ubiquitin specific peptidase 22" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:2144157 Usp22 "ubiquitin specific peptidase 22" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P0C8Z3UBP22_BOVIN3, ., 4, ., 1, 9, ., 1, 20.38110.88110.9805yesno
Q9LEW0UBP22_ARATH3, ., 4, ., 1, 9, ., 1, 20.49550.90900.9335yesno
Q9UPT9UBP22_HUMAN3, ., 4, ., 1, 9, ., 1, 20.38290.88110.96yesno
Q5DU02UBP22_MOUSE3, ., 4, ., 1, 9, ., 1, 20.38610.87760.9561yesno
A6H8I0UBP22_DANRE3, ., 4, ., 1, 9, ., 1, 20.38110.87060.9841yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.190.921
3rd Layer3.4.19.120.914

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query572
cd02660328 cd02660, Peptidase_C19D, A subfamily of Peptidase 1e-128
pfam00443313 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol 1e-72
cd02661304 cd02661, Peptidase_C19E, A subfamily of Peptidase 6e-70
cd02659334 cd02659, peptidase_C19C, A subfamily of Peptidase 2e-52
cd02257255 cd02257, Peptidase_C19, Peptidase C19 contains ubi 6e-51
cd02674230 cd02674, Peptidase_C19R, A subfamily of peptidase 2e-48
cd02667279 cd02667, Peptidase_C19K, A subfamily of Peptidase 1e-41
cd02663300 cd02663, Peptidase_C19G, A subfamily of Peptidase 1e-41
COG5533415 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Pos 3e-37
cd02668324 cd02668, Peptidase_C19L, A subfamily of Peptidase 1e-29
cd02671332 cd02671, Peptidase_C19O, A subfamily of Peptidase 2e-25
COG5560 823 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po 3e-24
COG5560823 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po 5e-24
COG5077 1089 COG5077, COG5077, Ubiquitin carboxyl-terminal hydr 1e-23
cd02664327 cd02664, Peptidase_C19H, A subfamily of Peptidase 3e-22
cd02657305 cd02657, Peptidase_C19A, A subfamily of Peptidase 1e-19
cd02658311 cd02658, Peptidase_C19B, A subfamily of Peptidase 1e-17
COG5207 749 COG5207, UBP14, Isopeptidase T [Posttranslational 1e-15
pfam13423296 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydr 7e-13
cd02662240 cd02662, Peptidase_C19F, A subfamily of Peptidase 2e-11
cd02257255 cd02257, Peptidase_C19, Peptidase C19 contains ubi 2e-07
cd02669440 cd02669, Peptidase_C19M, A subfamily of Peptidase 2e-07
cd02673245 cd02673, Peptidase_C19Q, A subfamily of Peptidase 2e-07
cd02674230 cd02674, Peptidase_C19R, A subfamily of peptidase 2e-06
cd02666343 cd02666, Peptidase_C19J, A subfamily of Peptidase 2e-06
cd02665228 cd02665, Peptidase_C19I, A subfamily of Peptidase 3e-06
pfam0214863 pfam02148, zf-UBP, Zn-finger in ubiquitin-hydrolas 4e-05
cd02662240 cd02662, Peptidase_C19F, A subfamily of Peptidase 8e-05
cd02669440 cd02669, Peptidase_C19M, A subfamily of Peptidase 9e-05
cd02666343 cd02666, Peptidase_C19J, A subfamily of Peptidase 9e-05
>gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19 Back     alignment and domain information 
 Score =  379 bits (975), Expect = e-128
 Identities = 169/362 (46%), Positives = 209/362 (57%), Gaps = 37/362 (10%)

Query: 199 RGLNNLGNTCFMNSVLQALFHTPPLRNYFLSDRHNRYYCQSKNGVRLCLACDLDTMFSAI 258
           RGL NLG TCFMN +LQAL H P LRNYFLSDRH+   C S +    CL+C +D +F   
Sbjct: 1   RGLINLGATCFMNVILQALLHNPLLRNYFLSDRHSC-TCLSCSP-NSCLSCAMDEIFQEF 58

Query: 259 F-CGDRMPYSPAKFLYSWWRHASNLASYEQQDAHEFFISMLDGIHEKVEKDQHKPRSQGN 317
           +  GDR PY P   LY  W+H+ NLA Y QQDAHEFF  +LD +H     D  K  +   
Sbjct: 59  YYSGDRSPYGPINLLYLSWKHSRNLAGYSQQDAHEFFQFLLDQLHTHYGGD--KNEANDE 116

Query: 318 GDC-CIAHRVFSGILRSDVMCMACGFTSTTFDPCVDFSLDLEPNQGSSMKTSSTKSNHSC 376
             C CI H+ FSG L+S V C  CG  STT DP +D SLD+      S  + +   +   
Sbjct: 117 SHCNCIIHQTFSGSLQSSVTCQRCGGVSTTVDPFLDLSLDIPNK---STPSWALGESG-- 171

Query: 377 NCEADGMNSSQNCGISTLMGCLDRFTRPERLGSDQKFFCQQCQVRQESLKQMSIRKLPLV 436
                        G  TL  CLDRFTRPE+LG    + C  C   QE+ KQ+SI+KLP V
Sbjct: 172 -----------VSGTPTLSDCLDRFTRPEKLGDFA-YKCSGCGSTQEATKQLSIKKLPPV 219

Query: 437 SCFHIKRFEHSSVRKMSRKVDRYLQFPLSLDMAPYLSSSILRSRFGNRFFPFDGDESNTL 496
            CF +KRFEHS   K SRK+D Y+QFPL L+M PY SSSI            D  +SN+L
Sbjct: 220 LCFQLKRFEHSL-NKTSRKIDTYVQFPLELNMTPYTSSSI-----------GDTQDSNSL 267

Query: 497 NEPSSEFELFAVVTHTGKLDAGHYVTYLRLSN-KWYKCDDAWITEVNENTVRAAQGYMMF 555
           + P   ++LFAVV H G LD GHY  Y R  + +W+K DDA IT V+E  V  +Q Y++F
Sbjct: 268 D-PDYTYDLFAVVVHKGTLDTGHYTAYCRQGDGQWFKFDDAMITRVSEEEVLKSQAYLLF 326

Query: 556 YV 557
           Y 
Sbjct: 327 YH 328

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 328
>gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information
>gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases Back     alignment and domain information
>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 Back     alignment and domain information
>gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|222118 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information
>gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases Back     alignment and domain information
>gnl|CDD|239134 cd02669, Peptidase_C19M, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239138 cd02673, Peptidase_C19Q, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 Back     alignment and domain information
>gnl|CDD|239131 cd02666, Peptidase_C19J, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239130 cd02665, Peptidase_C19I, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|216903 pfam02148, zf-UBP, Zn-finger in ubiquitin-hydrolases and other protein Back     alignment and domain information
>gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239134 cd02669, Peptidase_C19M, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239131 cd02666, Peptidase_C19J, A subfamily of Peptidase C19 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 572
cd02669440 Peptidase_C19M A subfamily of Peptidase C19. Pepti 100.0
KOG0944763 consensus Ubiquitin-specific protease UBP14 [Postt 100.0
KOG1865 545 consensus Ubiquitin carboxyl-terminal hydrolase [P 100.0
COG5207749 UBP14 Isopeptidase T [Posttranslational modificati 100.0
KOG1873877 consensus Ubiquitin-specific protease [Posttransla 100.0
cd02663300 Peptidase_C19G A subfamily of Peptidase C19. Pepti 100.0
cd02660328 Peptidase_C19D A subfamily of Peptidase C19. Pepti 100.0
cd02671332 Peptidase_C19O A subfamily of Peptidase C19. Pepti 100.0
cd02668324 Peptidase_C19L A subfamily of Peptidase C19. Pepti 100.0
cd02664327 Peptidase_C19H A subfamily of Peptidase C19. Pepti 100.0
cd02667279 Peptidase_C19K A subfamily of Peptidase C19. Pepti 100.0
KOG1867492 consensus Ubiquitin-specific protease [Posttransla 100.0
cd02658311 Peptidase_C19B A subfamily of Peptidase C19. Pepti 100.0
cd02657305 Peptidase_C19A A subfamily of Peptidase C19. Pepti 100.0
cd02659334 peptidase_C19C A subfamily of Peptidase C19. Pepti 100.0
cd02661304 Peptidase_C19E A subfamily of Peptidase C19. Pepti 100.0
COG5560823 UBP12 Ubiquitin C-terminal hydrolase [Posttranslat 100.0
COG5533415 UBP5 Ubiquitin C-terminal hydrolase [Posttranslati 100.0
cd02662240 Peptidase_C19F A subfamily of Peptidase C19. Pepti 100.0
KOG1868653 consensus Ubiquitin C-terminal hydrolase [Posttran 100.0
cd02674230 Peptidase_C19R A subfamily of peptidase C19. Pepti 100.0
KOG1866 944 consensus Ubiquitin carboxyl-terminal hydrolase [P 100.0
cd02673245 Peptidase_C19Q A subfamily of Peptidase C19. Pepti 100.0
COG5077 1089 Ubiquitin carboxyl-terminal hydrolase [Posttransla 100.0
cd02666343 Peptidase_C19J A subfamily of Peptidase C19. Pepti 100.0
cd02665228 Peptidase_C19I A subfamily of Peptidase C19. Pepti 100.0
PF00443269 UCH: Ubiquitin carboxyl-terminal hydrolase; InterP 100.0
KOG1870842 consensus Ubiquitin C-terminal hydrolase [Posttran 100.0
cd02257255 Peptidase_C19 Peptidase C19 contains ubiquitinyl h 100.0
cd02672268 Peptidase_C19P A subfamily of Peptidase C19. Pepti 100.0
KOG4598 1203 consensus Putative ubiquitin-specific protease [Po 100.0
KOG2026442 consensus Spindle pole body protein - Sad1p [Cytos 100.0
KOG1863 1093 consensus Ubiquitin carboxyl-terminal hydrolase [P 100.0
PF13423295 UCH_1: Ubiquitin carboxyl-terminal hydrolase 100.0
cd02670241 Peptidase_C19N A subfamily of Peptidase C19. Pepti 100.0
KOG1864587 consensus Ubiquitin-specific protease [Posttransla 100.0
KOG1872473 consensus Ubiquitin-specific protease [Posttransla 99.96
KOG1871420 consensus Ubiquitin-specific protease [Posttransla 99.96
KOG1275 1118 consensus PAB-dependent poly(A) ribonuclease, subu 99.83
PF0214863 zf-UBP: Zn-finger in ubiquitin-hydrolases and othe 99.77
KOG0804493 consensus Cytoplasmic Zn-finger protein BRAP2 (BRC 99.23
smart0029050 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like 99.09
PF15499275 Peptidase_C98: Ubiquitin-specific peptidase-like, 98.66
KOG1864 587 consensus Ubiquitin-specific protease [Posttransla 97.41
PF08715320 Viral_protease: Papain like viral protease; InterP 97.09
KOG1887806 consensus Ubiquitin carboxyl-terminal hydrolase [P 93.35
PF05408193 Peptidase_C28: Foot-and-mouth virus L-proteinase; 92.8
PF09416152 UPF1_Zn_bind: RNA helicase (UPF2 interacting domai 89.24
KOG3556724 consensus Familial cylindromatosis protein [Genera 86.18
PF05408193 Peptidase_C28: Foot-and-mouth virus L-proteinase; 84.65
>cd02669 Peptidase_C19M A subfamily of Peptidase C19 Back     alignment and domain information 
Probab=100.00  E-value=2.9e-78  Score=634.67  Aligned_cols=402  Identities=23%  Similarity=0.361  Sum_probs=318.8

Q ss_pred             CcccCCCCCCCCCcEEecccCccccCCCCCCchhhhhccCCCCCCCceEEEEcCCCceeeccCCceeeCCchhhHHhhhc
Q 008267           64 PRCGVCGDSSCPRLYACMACAAVSCHVPPHSSHVAIHATKTSSACSHEIAVDVDRAELFCCACRDQVYDRDFDAAVVLAH  143 (572)
Q Consensus        64 ~~C~~C~~~~~~~~~~Cl~C~~~~c~~~~~~~h~~~H~~~~~~~~~H~~~~~~~~~~~~C~~c~~~v~~~~~~~~~~~~~  143 (572)
                      ..|+.|.  ...++|+||+||.++|| ++.++||+.|+    .+++|+++|+++++.+|||+|+++|+|+.+++++....
T Consensus        17 ~~C~~~~--~~~n~~~CL~cg~~~~g-~~~~~ha~~H~----~~~~H~~~v~l~t~~~yc~~~~~~v~d~~l~~i~~~~~   89 (440)
T cd02669          17 KVCSVSL--SNLNVYACLVCGKYFQG-RGKGSHAYTHS----LEDNHHVFLNLETLKFYCLPDNYEIIDSSLDDIKYVLN   89 (440)
T ss_pred             ccccccC--CCCcEEEEcccCCeecC-CCCCcHHHHHh----hccCCCEEEECCCCCEEEeCCCCEEeCccHHHHHHHhc
Confidence            4599995  56889999999988777 66789999999    88999999999999999999999999999987763311


Q ss_pred             eeccccCCChhhhhhhcccCCCCCCCChhhhhhcccCCCCCCCCCCCCCCCCCcccccccCCchhhHHHHHHHHhCChhH
Q 008267          144 TTSIIQSSKPENLRKRRRIDYRPWSPDLRERSLMVNNASPIDSMSSSNGDLPRGLRGLNNLGNTCFMNSVLQALFHTPPL  223 (572)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~GL~NlGNTCY~NSvLQ~L~~~p~f  223 (572)
                             +.   .+++             +...+..+..  .+.+..+..+.+|++||.|+|||||||||||+|+|+|+|
T Consensus        90 -------~~---~~~~-------------~i~~~~~~~~--~~~~~~~~~~~~G~vGL~NlGnTCYmNsvLQ~L~~~p~l  144 (440)
T cd02669          90 -------PT---YTKE-------------QISDLDRDPK--LSRDLDGKPYLPGFVGLNNIKNNDYANVIIQALSHVKPI  144 (440)
T ss_pred             -------CC---CCHH-------------HHHHhhhccc--cccccCCCCccCCccCccCCCCchHHHHHHHHHHCCHHH
Confidence                   10   0000             0000000000  011224467789999999999999999999999999999


Q ss_pred             HHHHhcCCCcccccccCCCCcccHHHHHHHHHHHHHcCC--CCccChHHHHHHHHHhc-CCCcccccCchHHHHHHHHHH
Q 008267          224 RNYFLSDRHNRYYCQSKNGVRLCLACDLDTMFSAIFCGD--RMPYSPAKFLYSWWRHA-SNLASYEQQDAHEFFISMLDG  300 (572)
Q Consensus       224 r~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~--~~~i~p~~~l~~l~~~~-~~f~~~~QqDA~Efl~~lLd~  300 (572)
                      |++|+...+....    .....++.++|..+++++|++.  +..++|.+|+..++... +.|.+++||||||||.+|||.
T Consensus       145 r~~~l~~~~~~~~----~~~~~~l~~~l~~l~~kl~~~~~~~~~isP~~fl~~l~~~~~~~f~~~~QqDA~EFl~~LLd~  220 (440)
T cd02669         145 RNFFLLYENYENI----KDRKSELVKRLSELIRKIWNPRNFKGHVSPHELLQAVSKVSKKKFSITEQSDPVEFLSWLLNT  220 (440)
T ss_pred             HHHHhhccccccc----cCCCcHHHHHHHHHHHHHhccccCCCccCHHHHHHHHHhhcccccCCcccCCHHHHHHHHHHH
Confidence            9999986543211    1124579999999999999875  46799999999998764 578999999999999999999


Q ss_pred             HHHHhhhccCCCCCCCCCcccccccccceEEeeEEEeCcCC---------------CeeeeeeCCeeeeeccCCCCCCCc
Q 008267          301 IHEKVEKDQHKPRSQGNGDCCIAHRVFSGILRSDVMCMACG---------------FTSTTFDPCVDFSLDLEPNQGSSM  365 (572)
Q Consensus       301 L~~~~~~~~~~~~~~~~~~~~~i~~~F~g~l~s~i~C~~C~---------------~~s~~~e~f~~lsL~i~~~~~~~~  365 (572)
                      ||+++.....       ...++|+++|+|++.+.++|..|.               .++++.+||++|+|+||.......
T Consensus       221 L~~~l~~~~~-------~~~~ii~~~F~G~l~~~~~c~~~~~~~~~~~~~~~~c~~~~s~~~~pF~~LsLdip~~~~~~~  293 (440)
T cd02669         221 LHKDLGGSKK-------PNSSIIHDCFQGKVQIETQKIKPHAEEEGSKDKFFKDSRVKKTSVSPFLLLTLDLPPPPLFKD  293 (440)
T ss_pred             HHHHhccCCC-------CCCCcceeccCceEEEEEEeecccccccccccccccccccceeeeccceEEEecCCCCccccc
Confidence            9998764321       123689999999999999987654               356778999999999997531100


Q ss_pred             cccCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHhcCCccccCCCCccccccccccceeEEEEEeecCCceEEEEEEEeE
Q 008267          366 KTSSTKSNHSCNCEADGMNSSQNCGISTLMGCLDRFTRPERLGSDQKFFCQQCQVRQESLKQMSIRKLPLVSCFHIKRFE  445 (572)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vL~i~lkRf~  445 (572)
                                  +     ......+..+|++||+.            |.|+.|...+.++|+++|.++|+||+||||||.
T Consensus       294 ------------~-----~~~~~l~~~~l~e~L~k------------y~~~~c~~~~~a~k~~~I~~LP~vLiihLKRF~  344 (440)
T cd02669         294 ------------G-----NEENIIPQVPLKQLLKK------------YDGKTETELKDSLKRYLISRLPKYLIFHIKRFS  344 (440)
T ss_pred             ------------c-----ccccccCcccHHHHHHh------------cCCccceecccceEEEEEeeCCcEEEEEEeccc
Confidence                        0     00011135789999864            556778778888999999999999999999999


Q ss_pred             ecCCCccccccceeeecCCC-CCCccccchhhhccccCCCccCCCCCCCCCCCCCCccEEEEEEEeeeCCC-CCCcEEEE
Q 008267          446 HSSVRKMSRKVDRYLQFPLS-LDMAPYLSSSILRSRFGNRFFPFDGDESNTLNEPSSEFELFAVVTHTGKL-DAGHYVTY  523 (572)
Q Consensus       446 ~~~~~~~~~Ki~~~V~fp~~-Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avV~H~G~~-~~GHY~ay  523 (572)
                      ++.  ....|+.+.|.||.. |||++|+....                  ........|+|+|||+|.|+. ++|||++|
T Consensus       345 ~~~--~~~~K~~t~V~FP~~~LDm~~y~~~~~------------------~~~~~~~~Y~L~avI~H~G~~~~sGHY~a~  404 (440)
T cd02669         345 KNN--FFKEKNPTIVNFPIKNLDLSDYVHFDK------------------PSLNLSTKYNLVANIVHEGTPQEDGTWRVQ  404 (440)
T ss_pred             CCC--CccccCCCEEECCCCccchhhhhCccc------------------cccCCCceEEEEEEEEEeccCCCCeeEEEE
Confidence            985  567899999999996 89999986321                  012356799999999999996 99999999


Q ss_pred             EEe--CCcEEEEcCcceeeeCcccccCCceeEEEEE
Q 008267          524 LRL--SNKWYKCDDAWITEVNENTVRAAQGYMMFYV  557 (572)
Q Consensus       524 vr~--~~~W~~~dD~~V~~v~~~~v~~~~aYlLfY~  557 (572)
                      +|.  +++||+|||+.|+++++++|+.++||||||+
T Consensus       405 v~~~~~~~W~~fdD~~V~~v~~~~v~~~eaYll~Y~  440 (440)
T cd02669         405 LRHKSTNKWFEIQDLNVKEVLPQLIFLSESYIQIWE  440 (440)
T ss_pred             EEcCCCCeEEEEECCeeeEcCHHHhccCCceEEEeC
Confidence            996  6899999999999999999999999999996

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02663 Peptidase_C19G A subfamily of Peptidase C19 Back     alignment and domain information
>cd02660 Peptidase_C19D A subfamily of Peptidase C19 Back     alignment and domain information
>cd02671 Peptidase_C19O A subfamily of Peptidase C19 Back     alignment and domain information
>cd02668 Peptidase_C19L A subfamily of Peptidase C19 Back     alignment and domain information
>cd02664 Peptidase_C19H A subfamily of Peptidase C19 Back     alignment and domain information
>cd02667 Peptidase_C19K A subfamily of Peptidase C19 Back     alignment and domain information
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02658 Peptidase_C19B A subfamily of Peptidase C19 Back     alignment and domain information
>cd02657 Peptidase_C19A A subfamily of Peptidase C19 Back     alignment and domain information
>cd02659 peptidase_C19C A subfamily of Peptidase C19 Back     alignment and domain information
>cd02661 Peptidase_C19E A subfamily of Peptidase C19 Back     alignment and domain information
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02662 Peptidase_C19F A subfamily of Peptidase C19 Back     alignment and domain information
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02674 Peptidase_C19R A subfamily of peptidase C19 Back     alignment and domain information
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19 Back     alignment and domain information
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02666 Peptidase_C19J A subfamily of Peptidase C19 Back     alignment and domain information
>cd02665 Peptidase_C19I A subfamily of Peptidase C19 Back     alignment and domain information
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases Back     alignment and domain information
>cd02672 Peptidase_C19P A subfamily of Peptidase C19 Back     alignment and domain information
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton] Back     alignment and domain information
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information
>cd02670 Peptidase_C19N A subfamily of Peptidase C19 Back     alignment and domain information
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] Back     alignment and domain information
>PF02148 zf-UBP: Zn-finger in ubiquitin-hydrolases and other protein; InterPro: IPR001607 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] Back     alignment and domain information
>smart00290 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger Back     alignment and domain information
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase Back     alignment and domain information
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein Back     alignment and domain information
>KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF09416 UPF1_Zn_bind: RNA helicase (UPF2 interacting domain); InterPro: IPR018999 UPF1 (or regulator of nonsense transcripts 1 homologue) is an essential RNA helicase that detects mRNAs containing premature stop codons and triggers their degradation Back     alignment and domain information
>KOG3556 consensus Familial cylindromatosis protein [General function prediction only] Back     alignment and domain information
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query572
3m99_A471 Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Mod 8e-42
3mhh_A476 Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE 9e-42
4fip_A476 Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta- 2e-41
2y6e_A367 Ubiquitin Specific Protease 4 Is Inhibited By Its U 4e-31
3n3k_A396 The Catalytic Domain Of Usp8 In Complex With A Usp8 1e-29
3v6c_A367 Crystal Structure Of Usp2 In Complex With Mutated U 8e-29
2hd5_A359 Usp2 In Complex With Ubiquitin Length = 359 9e-29
2gfo_A396 Structure Of The Catalytic Domain Of Human Ubiquiti 4e-28
2ibi_A374 Covalent Ubiquitin-Usp2 Complex Length = 374 7e-28
3nhe_A348 High Resolution Structure (1.26a) Of Usp2a In Compl 1e-27
3mtn_A373 Usp21 In Complex With A Ubiquitin-based, Usp21-spec 1e-25
2y5b_A370 Structure Of Usp21 In Complex With Linear Diubiquit 1e-25
3i3t_A355 Crystal Structure Of Covalent Ubiquitin-usp21 Compl 1e-25
1nbf_A353 Crystal Structure Of A Ubp-Family Deubiquitinating 6e-07
2f1z_A522 Crystal Structure Of Hausp Length = 522 8e-07
1nb8_A353 Structure Of The Catalytic Domain Of Usp7 (Hausp) L 1e-05
2ayn_A404 Structure Of Usp14, A Proteasome-Associated Deubiqu 8e-05
>pdb|3M99|A Chain A, Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Module Length = 471 Back     alignment and structure 
Iteration: 1

 Score =  168 bits (425), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 140/558 (25%), Positives = 231/558 (41%), Gaps = 118/558 (21%)
Query: 23  CPHLADFHARNGTKPFRAIQDCLHIKPPGGRAAIRRDSSEVPRCGVCGDSSCPRLYACMA 82
           CPH+        +K    ++ C   +     +  +       +CG C + +    + C+ 
Sbjct: 4   CPHIQQVFQNEKSKD-GVLKTCNAARYILNHSVPKEKFLNTMKCGTCHEINSGATFMCLQ 62
Query: 83  CAAVSCHVPPHSSHVAIHATKTSSACSHEIAVDVDRAELFCCACRDQVYDRDFDAAVVLA 142
           C    C    + SH   H+ +      H   ++ +   LFC  C D + + D     +LA
Sbjct: 63  CGFCGCW---NHSHFLSHSKQIG----HIFGINSNNGLLFCFKCEDYIGNIDLINDAILA 115
Query: 143 HTTSIIQSSKPENLRKRRRIDYRPWSPDLRERSLMVNNASPIDSMSSSXXXXXXXXXXXX 202
                         +    +  +   P +  R    +  S + +M S             
Sbjct: 116 --------------KYWDDVCTKTMVPSMERR----DGLSGLINMGS------------- 144
Query: 203 XXXXTCFMNSVLQALFHTPPLRNYFLSDRHNRYYCQSKN-GVR---LCLACDLDTMFSAI 258
               TCFM+S+LQ L H P    YF+  RH+     S N  VR    C +C LD +   +
Sbjct: 145 ----TCFMSSILQCLIHNP----YFI--RHSMSQIHSNNCKVRSPDKCFSCALDKIVHEL 194
Query: 259 FCGDRMPYSPAK---------FLYSW---WRHASNLASYEQQDAHEFFISMLDGIHEKVE 306
           +       + +          F+Y     W+   NLA Y QQDAHEF+  +++ IH+   
Sbjct: 195 YGALNTKQASSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQSYV 254
Query: 307 KDQHKPRS---QGNGDC-CIAHRVFSGILRSDVMCMACGFTS-TTFDPCVDFSLDLEPNQ 361
            D    +      N  C CI H VF G L S ++C  C   S TT DP +D SLD++  +
Sbjct: 255 LDLPNAKEVSRANNKQCECIVHTVFEGSLESSIVCPGCQNNSKTTIDPFLDLSLDIKDKK 314
Query: 362 GSSMKTSSTKSNHSCNCEADGMNSSQNCGISTLMGCLDRFTRPERLGSDQKFFCQQCQVR 421
                                           L  CLD F + E+L  D  + C +C   
Sbjct: 315 -------------------------------KLYECLDSFHKKEQL-KDFNYHCGECNST 342
Query: 422 QESLKQMSIRKLPLVSCFHIKRFEHSSVRKMSRKVDRYLQFPLSLDMAPYLSSSILRSRF 481
           Q+++KQ+ I KLP V    +KRFEH  +   +RK+D +++FP  L+M  Y S+       
Sbjct: 343 QDAIKQLGIHKLPSVLVLQLKRFEH-LLNGSNRKLDDFIEFPTYLNMKNYCSTK------ 395
Query: 482 GNRFFPFDGDE-SNTLNEPSSEFELFAVVTHTGKLDAGHYVTYLRLS-NKWYKCDDAWIT 539
                  + D+ S     P   +EL  +V+H G ++ GHY+ + ++S  +W+K +D+ ++
Sbjct: 396 -------EKDKHSENGKVPDIIYELIGIVSHKGTVNEGHYIAFCKISGGQWFKFNDSMVS 448
Query: 540 EVNENTVRAAQGYMMFYV 557
            +++  V   Q Y++FY 
Sbjct: 449 SISQEEVLKEQAYLLFYT 466
>pdb|3MHH|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE Length = 476 Back     alignment and structure
>pdb|4FIP|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta-Znf)SUS1SGF73 Dub Module Length = 476 Back     alignment and structure
>pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its Ubiquitin- Like Domain Length = 367 Back     alignment and structure
>pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 396 Back     alignment and structure
>pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 367 Back     alignment and structure
>pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin Length = 359 Back     alignment and structure
>pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin Carboxyl-terminal Hydrolase 8 Length = 396 Back     alignment and structure
>pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex Length = 374 Back     alignment and structure
>pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With Ubiquitin Length = 348 Back     alignment and structure
>pdb|3MTN|A Chain A, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 373 Back     alignment and structure
>pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 370 Back     alignment and structure
>pdb|3I3T|A Chain A, Crystal Structure Of Covalent Ubiquitin-usp21 Complex Length = 355 Back     alignment and structure
>pdb|1NBF|A Chain A, Crystal Structure Of A Ubp-Family Deubiquitinating Enzyme In Isolation And In Complex With Ubiquitin Aldehyde Length = 353 Back     alignment and structure
>pdb|2F1Z|A Chain A, Crystal Structure Of Hausp Length = 522 Back     alignment and structure
>pdb|1NB8|A Chain A, Structure Of The Catalytic Domain Of Usp7 (Hausp) Length = 353 Back     alignment and structure
>pdb|2AYN|A Chain A, Structure Of Usp14, A Proteasome-Associated Deubiquitinating Enzyme Length = 404 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query572
3mhs_A476 Ubiquitin carboxyl-terminal hydrolase 8; multi-pro 1e-124
3nhe_A348 Ubiquitin carboxyl-terminal hydrolase 2; cysteine 1e-109
2y6e_A367 Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 1e-104
2gfo_A396 Ubiquitin carboxyl-terminal hydrolase 8; protease, 1e-104
2ayn_A404 Ubiquitin carboxyl-terminal hydrolase 14; deubiqui 6e-93
3i3t_A355 Ubiquitin carboxyl-terminal hydrolase 21; hydrolas 3e-89
1nb8_A353 Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub 2e-74
3ihp_A 854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 3e-73
3ihp_A854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 4e-10
2f1z_A522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 2e-71
1vjv_A415 Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, 7e-42
3c5k_A109 HD6, histone deacetylase 6; HDAC6, zinc finger, ac 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
2i50_A126 Ubiquitin carboxyl-terminal hydrolase 16; alpha/be 6e-04
2g45_A129 Ubiquitin carboxyl-terminal hydrolase 5; zinc fing 7e-04
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476 Back     alignment and structure
 Score =  373 bits (960), Expect = e-124
 Identities = 134/558 (24%), Positives = 217/558 (38%), Gaps = 108/558 (19%)

Query: 20  PQPCPHLADFHARNGTKPFRAIQDCLHIKPPGGRAAIRRDSSEVPRCGVCGDSSCPRLYA 79
              CPH+        +K    ++ C   +     +  +       +CG C + +    + 
Sbjct: 6   MSICPHIQQVFQNEKSKDGV-LKTCNAARYILNHSVPKEKFLNTMKCGTCHEINSGATFM 64

Query: 80  CMACAAVSCHVPPHSSHVAIHATKTSSACSHEIAVDVDRAELFCCACRDQVYDRDFDAAV 139
           C+ C    C      SH   H+ +      H   ++ +   LFC  C D + + D     
Sbjct: 65  CLQCGFCGCWNH---SHFLSHSKQIG----HIFGINSNNGLLFCFKCEDYIGNIDLINDA 117

Query: 140 VLAHTTSIIQSSKPENLRKRRRIDYRPWSPDLRERSLMVNNASPIDSMSSSNGDLPRGLR 199
           +LA     + +       +RR                                    GL 
Sbjct: 118 ILAKYWDDVCTKTMVPSMERRD-----------------------------------GLS 142

Query: 200 GLNNLGNTCFMNSVLQALFHTPPLRNYFLSDRHNRYYCQSKNGVRLCLACDLDTMFSAIF 259
           GL N+G+TCFM+S+LQ L H P    + +S  H+            C +C LD +   ++
Sbjct: 143 GLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPD--KCFSCALDKIVHELY 200

Query: 260 CGDR------------MPYSPAKFLYSWWRHASNLASYEQQDAHEFFISMLDGIHEKVEK 307
                                   L   W+   NLA Y QQDAHEF+  +++ IH+    
Sbjct: 201 GALNTKQASSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQSYVL 260

Query: 308 DQHK----PRSQGNGDCCIAHRVFSGILRSDVMCMACGFTS-TTFDPCVDFSLDLEPNQG 362
           D        R+      CI H VF G L S ++C  C   S TT DP +D SLD++    
Sbjct: 261 DLPNAKEVSRANNKQCECIVHTVFEGSLESSIVCPGCQNNSKTTIDPFLDLSLDIK---- 316

Query: 363 SSMKTSSTKSNHSCNCEADGMNSSQNCGISTLMGCLDRFTRPERLGSDQKFFCQQCQVRQ 422
                                          L  CLD F + E+L  D  + C +C   Q
Sbjct: 317 ---------------------------DKKKLYECLDSFHKKEQL-KDFNYHCGECNSTQ 348

Query: 423 ESLKQMSIRKLPLVSCFHIKRFEHSSVRKMSRKVDRYLQFPLSLDMAPYLSSSILRSRFG 482
           +++KQ+ I KLP V    +KRFEH      +RK+D +++FP  L+M  Y S+        
Sbjct: 349 DAIKQLGIHKLPSVLVLQLKRFEHLL-NGSNRKLDDFIEFPTYLNMKNYCST-------- 399

Query: 483 NRFFPFDGDESNTLNEPSSEFELFAVVTHTGKLDAGHYVTYLRLSN-KWYKCDDAWITEV 541
                     S     P   +EL  +V+H G ++ GHY+ + ++S  +W+K +D+ ++ +
Sbjct: 400 ----KEKDKHSENGKVPDIIYELIGIVSHKGTVNEGHYIAFCKISGGQWFKFNDSMVSSI 455

Query: 542 NENTVRAAQGYMMFYVQK 559
           ++  V   Q Y++FY  +
Sbjct: 456 SQEEVLKEQAYLLFYTIR 473
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348 Back     alignment and structure
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367 Back     alignment and structure
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396 Back     alignment and structure
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404 Back     alignment and structure
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355 Back     alignment and structure
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353 Back     alignment and structure
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 Back     alignment and structure
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522 Back     alignment and structure
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415 Back     alignment and structure
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A Length = 109 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens} Length = 126 Back     alignment and structure
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A Length = 129 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query572
3mhs_A476 Ubiquitin carboxyl-terminal hydrolase 8; multi-pro 100.0
3ihp_A854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 100.0
2y6e_A367 Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 100.0
2gfo_A396 Ubiquitin carboxyl-terminal hydrolase 8; protease, 100.0
3nhe_A348 Ubiquitin carboxyl-terminal hydrolase 2; cysteine 100.0
3i3t_A355 Ubiquitin carboxyl-terminal hydrolase 21; hydrolas 100.0
1nb8_A353 Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub 100.0
2ayn_A404 Ubiquitin carboxyl-terminal hydrolase 14; deubiqui 100.0
1vjv_A415 Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, 100.0
2f1z_A522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 100.0
2vhf_A374 Ubiquitin carboxyl-terminal hydrolase CYLD; cytoki 99.97
3c5k_A109 HD6, histone deacetylase 6; HDAC6, zinc finger, ac 99.89
2g45_A129 Ubiquitin carboxyl-terminal hydrolase 5; zinc fing 99.87
2uzg_A97 Ubiquitin carboxyl-terminal hydrolase 33; UBL conj 99.83
2ida_A102 Hypothetical protein; zinc binding protein, struct 99.83
2i50_A126 Ubiquitin carboxyl-terminal hydrolase 16; alpha/be 99.81
3mp2_A211 Non-structural protein 3; papain-like protease, TG 97.91
2fe8_A315 PP1AB, ORF1AB, replicase polyprotein 1AB; protease 97.22
1wg2_A64 Zinc finger (AN1-like) family protein; riken struc 84.02
1wfp_A74 Zinc finger (AN1-like) family protein; ZF-AN1 doma 82.79
1wfh_A64 Zinc finger (AN1-like) family protein; ZF-AN1 doma 82.62
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A Back     alignment and structure
Probab=100.00  E-value=5.5e-84  Score=691.90  Aligned_cols=410  Identities=30%  Similarity=0.640  Sum_probs=330.9

Q ss_pred             CcccCCCCCCCCCcEEecccCccccCCCCCCchhhhhccCCCCCCCceEEEEcCCCceeeccCCceeeCCchhhHHhhhc
Q 008267           64 PRCGVCGDSSCPRLYACMACAAVSCHVPPHSSHVAIHATKTSSACSHEIAVDVDRAELFCCACRDQVYDRDFDAAVVLAH  143 (572)
Q Consensus        64 ~~C~~C~~~~~~~~~~Cl~C~~~~c~~~~~~~h~~~H~~~~~~~~~H~~~~~~~~~~~~C~~c~~~v~~~~~~~~~~~~~  143 (572)
                      ++|++|......++|+||+||++|||+   ++||+.|+    .+++|+++|++.++++|||.|+++|+|+++......  
T Consensus        49 ~~C~~c~~~~~~~~~~cl~cg~~~c~~---~~h~~~H~----~~~~h~~~~~~~~~~~~c~~~~~~v~d~~l~~~~~~--  119 (476)
T 3mhs_A           49 MKCGTCHEINSGATFMCLQCGFCGCWN---HSHFLSHS----KQIGHIFGINSNNGLLFCFKCEDYIGNIDLINDAIL--  119 (476)
T ss_dssp             SBCTTTCCBCSSSEEEESSSSCEEETT---TTHHHHHH----HHHCCCEEEETTTCCEEETTTTEEECSCHHHHTGGG--
T ss_pred             CCcccccCCCCCCceEeCCCCCCccCC---chHHHHHh----cccCCcEEEECCCCcEEeCCCCCCcccHHHHHHHHh--
Confidence            679999633237999999999999994   79999999    788999999999999999999999999987422111  


Q ss_pred             eeccccCCChhhhhhhcccCCCCCCCChhhhhhcccCCCCCCCCCCCCCCCCCcccccccCCchhhHHHHHHHHhCChhH
Q 008267          144 TTSIIQSSKPENLRKRRRIDYRPWSPDLRERSLMVNNASPIDSMSSSNGDLPRGLRGLNNLGNTCFMNSVLQALFHTPPL  223 (572)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~GL~NlGNTCY~NSvLQ~L~~~p~f  223 (572)
                       ..+                   |.. ....     ...       ......+|++||.|+|||||||||||+|+++|+|
T Consensus       120 -~~~-------------------~~~-~~~~-----~~~-------~~~~~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~f  166 (476)
T 3mhs_A          120 -AKY-------------------WDD-VCTK-----TMV-------PSMERRDGLSGLINMGSTCFMSSILQCLIHNPYF  166 (476)
T ss_dssp             -GGG-------------------HHH-HHHH-----EEC-------CCGGGTTCCCCCCCSSSTHHHHHHHHHHHTCHHH
T ss_pred             -hhc-------------------cch-hhhc-----ccC-------CCccCCCCCCCCCcCCccHHHHHHHHHHhCCHHH
Confidence             000                   100 0000     000       1134578999999999999999999999999999


Q ss_pred             HHHHhcCCCcccccccCCCCcccHHHHHHHHHHHHHcCCCC---------ccChHH---HHHHHHHhcCCCcccccCchH
Q 008267          224 RNYFLSDRHNRYYCQSKNGVRLCLACDLDTMFSAIFCGDRM---------PYSPAK---FLYSWWRHASNLASYEQQDAH  291 (572)
Q Consensus       224 r~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~---------~i~p~~---~l~~l~~~~~~f~~~~QqDA~  291 (572)
                      |++++...+.. .|.. ..+..|+.++|..+|..+++....         .+.|..   ++..+|+..+.|.+++|||||
T Consensus       167 r~~~l~~~~~~-~~~~-~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~f~~~~QqDA~  244 (476)
T 3mhs_A          167 IRHSMSQIHSN-NCKV-RSPDKCFSCALDKIVHELYGALNTKQASSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQDAH  244 (476)
T ss_dssp             HHHHHTTHHHH-HCSS-CCTTTCHHHHHHHHHHHHHSCCCC--------CCCSCHHHHHHHHHHHHHCGGGSSSSCEEHH
T ss_pred             HHHHHhcchhh-hccC-CCcccchHHHHHHHHHHHhhcccccccccccccccCcchHHHHHHHHHHhccccCCCCCcCHH
Confidence            99998654332 2222 234678999999999999975322         344544   555667999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhccCCCC----CCCCCcccccccccceEEeeEEEeCcCCCee-eeeeCCeeeeeccCCCCCCCcc
Q 008267          292 EFFISMLDGIHEKVEKDQHKPR----SQGNGDCCIAHRVFSGILRSDVMCMACGFTS-TTFDPCVDFSLDLEPNQGSSMK  366 (572)
Q Consensus       292 Efl~~lLd~L~~~~~~~~~~~~----~~~~~~~~~i~~~F~g~l~s~i~C~~C~~~s-~~~e~f~~lsL~i~~~~~~~~~  366 (572)
                      |||.+||+.|++++........    .......++|+++|+|++.++++|..|+.++ ++.++|++|+|+||.       
T Consensus       245 EFl~~LLd~L~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~G~l~~~~~C~~C~~~s~~~~e~f~~LsL~i~~-------  317 (476)
T 3mhs_A          245 EFWQFIINQIHQSYVLDLPNAKEVSRANNKQCECIVHTVFEGSLESSIVCPGCQNNSKTTIDPFLDLSLDIKD-------  317 (476)
T ss_dssp             HHHHHHHHHHHHHHHHHCCC-------CCCSCCSHHHHHSCEEEEEEEECTTTCCCCEEEEEEESCEEECCTT-------
T ss_pred             HHHHHHHHHHHHHHhhcccccccccccccccCCCcceeecceEEEEEEEECCCCCeeCCcccchhhhccchhh-------
Confidence            9999999999998765443211    1112233789999999999999999999996 458999999999984       


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHhcCCccccCCCCccccccccccceeEEEEEeecCCceEEEEEEEeEe
Q 008267          367 TSSTKSNHSCNCEADGMNSSQNCGISTLMGCLDRFTRPERLGSDQKFFCQQCQVRQESLKQMSIRKLPLVSCFHIKRFEH  446 (572)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vL~i~lkRf~~  446 (572)
                                              ..+|++||+.|+.+|.+++.+ |.|++|+..+.++|+.+|.++|+||+|||+||.+
T Consensus       318 ------------------------~~sl~~~L~~~~~~E~l~~~~-~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkRF~~  372 (476)
T 3mhs_A          318 ------------------------KKKLYECLDSFHKKEQLKDFN-YHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEH  372 (476)
T ss_dssp             ------------------------CCBHHHHHHHHHCCEECSSCC-CEETTTTEECCCEEEEEEEEBCSEEEEEECCEEE
T ss_pred             ------------------------hhHHHHHHHHhcChhhccCCC-CcCCccCCcccEEEEEEcccCCcceEEEeeeccc
Confidence                                    358999999999999998644 9999999999999999999999999999999998


Q ss_pred             cCCCccccccceeeecCCCCCCccccchhhhccccCCCccCCCCCCCCCCCCCCccEEEEEEEeeeCCCCCCcEEEEEEe
Q 008267          447 SSVRKMSRKVDRYLQFPLSLDMAPYLSSSILRSRFGNRFFPFDGDESNTLNEPSSEFELFAVVTHTGKLDAGHYVTYLRL  526 (572)
Q Consensus       447 ~~~~~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avV~H~G~~~~GHY~ayvr~  526 (572)
                      +. .+...|+++.|.||..|||++|+.......            ...........|+|+|||+|.|++++|||++|+|.
T Consensus       373 ~~-~~~~~K~~~~V~fP~~Ldl~~~~~~~~~~~------------~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~a~vr~  439 (476)
T 3mhs_A          373 LL-NGSNRKLDDFIEFPTYLNMKNYCSTKEKDK------------HSENGKVPDIIYELIGIVSHKGTVNEGHYIAFCKI  439 (476)
T ss_dssp             CT-TSCEEECCCCCBCCSEEECGGGBSCCBCCC--------------CCCBCCCEEEEEEEEEEEEECSSSEEEEEEEEC
T ss_pred             cC-CCCeEECCEEEcCCCeeechhhcCcccccc------------cccccCCCCCcEEEEEEEEeCCCCCCCceEEEEEC
Confidence            74 467899999999999999999987542110            00112335678999999999999999999999997


Q ss_pred             -CCcEEEEcCcceeeeCcccccCCceeEEEEEEeccc
Q 008267          527 -SNKWYKCDDAWITEVNENTVRAAQGYMMFYVQKMLY  562 (572)
Q Consensus       527 -~~~W~~~dD~~V~~v~~~~v~~~~aYlLfY~r~~~~  562 (572)
                       +++||+|||+.|+++++++|...+||||||+|++++
T Consensus       440 ~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~~n  476 (476)
T 3mhs_A          440 SGGQWFKFNDSMVSSISQEEVLKEQAYLLFYTIRQVN  476 (476)
T ss_dssp             TTSCEEEEETTEEEEECHHHHTTSCEEEEEEEEEEEC
T ss_pred             CCCcEEEEeCCceEECCHHHhccCCcEEEEEEEecCC
Confidence             789999999999999999999999999999999763
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Back     alignment and structure
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Back     alignment and structure
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Back     alignment and structure
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A Back     alignment and structure
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A Back     alignment and structure
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Back     alignment and structure
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Back     alignment and structure
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Back     alignment and structure
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens} Back     alignment and structure
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A Back     alignment and structure
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A Back     alignment and structure
>2ida_A Hypothetical protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: g.44.1.5 Back     alignment and structure
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens} Back     alignment and structure
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus} Back     alignment and structure
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A* Back     alignment and structure
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1 Back     alignment and structure
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1 Back     alignment and structure
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 572
d2gfoa1348 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h 2e-56
d2hd5a1336 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy 2e-55
d2ayna1383 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy 4e-47
d1nbfa_347 d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 1e-36
d1vjva_397 d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 2e-36
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  191 bits (485), Expect = 2e-56
 Identities = 100/396 (25%), Positives = 170/396 (42%), Gaps = 74/396 (18%)

Query: 184 IDSMSSSNGDLPRGLRGLNNLGNTCFMNSVLQALFHTPPLRNYFLSDRHNRYYCQSK-NG 242
           I +++   G     L GL NLGNTC+MNS+LQ L + P L +YF  + +     +S   G
Sbjct: 1   IRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLG 60

Query: 243 VRLCLACDLDTMFSAIFCGDRMPYSPAKFLYSWWRHASNLASYEQQDAHEFFISMLDGIH 302
            +  +A +   +  A++ G     SP  F  +  +     A Y QQD+ E  + ++DG+H
Sbjct: 61  HKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLH 120

Query: 303 EKVEKDQHKPRSQGNGDC--------------------CIAHRVFSGILRSDVMCMACGF 342
           E + K  ++ R +   +                      I   +F G  +S V C+ C  
Sbjct: 121 EDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHK 180

Query: 343 TSTTFDPCVDFSLDLEPNQGSSMKTSSTKSNHSCNCEADGMNSSQNCGISTLMGCLDRFT 402
            S TF+  +  SL L                              +    TL  CL  F+
Sbjct: 181 KSRTFEAFMYLSLPL-----------------------------ASTSKCTLQDCLRLFS 211

Query: 403 RPERLGSDQKFFCQQCQVRQESLKQMSIRKLPLVSCFHIKRFEHSSVRKMSRKVDRYLQF 462
           + E+L  + +F+C  C+ R++SLK++ I KLP V   H+KRF +    K  +        
Sbjct: 212 KEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQ-KLQTSVDFP 270

Query: 463 PLSLDMAPYLSSSILRSRFGNRFFPFDGDESNTLNEPSSEFELFAVVTHTGKLDAGHYVT 522
             +LD++ Y+                             ++ LF+V  H G LD GHY  
Sbjct: 271 LENLDLSQYVIGP---------------------KNNLKKYNLFSVSNHYGGLDGGHYTA 309

Query: 523 YLR--LSNKWYKCDDAWITEVNENTVRAAQGYMMFY 556
           Y +     +W+K DD  +++++ ++V+++  Y++FY
Sbjct: 310 YCKNAARQRWFKFDDHEVSDISVSSVKSSAAYILFY 345
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336 Back     information, alignment and structure
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383 Back     information, alignment and structure
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347 Back     information, alignment and structure
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query572
d1nbfa_347 Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU 100.0
d2gfoa1348 Ubiquitin carboxyl-terminal hydrolase 8 {Human (Ho 100.0
d2ayna1383 Ubiquitin carboxyl-terminal hydrolase 14 {Human (H 100.0
d2hd5a1336 Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Hum 100.0
d1vjva_397 Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y 100.0
d2g45a1113 Ubiquitin carboxyl-terminal hydrolase 5, UBP5 {Hum 99.84
d2uzga195 Ubiquitin carboxyl-terminal hydrolase 33, UBP33 {H 99.8
d2idaa1102 Hypothetical protein RPA1320 {Rhodopseudomonas pal 99.76
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-59  Score=480.17  Aligned_cols=297  Identities=25%  Similarity=0.423  Sum_probs=256.9

Q ss_pred             CCcccccccCCchhhHHHHHHHHhCChhHHHHHhcCCCcccccccCCCCcccHHHHHHHHHHHHHcCCCCccChHHHHHH
Q 008267          195 PRGLRGLNNLGNTCFMNSVLQALFHTPPLRNYFLSDRHNRYYCQSKNGVRLCLACDLDTMFSAIFCGDRMPYSPAKFLYS  274 (572)
Q Consensus       195 ~~g~~GL~NlGNTCY~NSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~~l~~  274 (572)
                      .+|++||.|+||||||||+||+|+++|+||++++......      .....++.++|+.+|..|+.+. .++.|..++..
T Consensus         3 ~~G~vGL~NlGNTCy~NSvLQ~L~~~~~f~~~i~~~~~~~------~~~~~~~~~~l~~lf~~l~~~~-~~~~~~~~~~~   75 (347)
T d1nbfa_           3 HTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEG------DDSSKSVPLALQRVFYELQHSD-KPVGTKKLTKS   75 (347)
T ss_dssp             SSSCCCBCCCSSCHHHHHHHHHHHTSHHHHHHHHTSCCTT------CCTTTCHHHHHHHHHHHHHHCS-SCBCCHHHHHH
T ss_pred             CCCCcCCeeCCcchHHHHHHHHHHcCHHHHHHHHhCCccC------CcccchHHHHHHHHHHHHhcCC-CCcChHHHHHh
Confidence            6799999999999999999999999999999998654321      1235579999999999998865 46788888877


Q ss_pred             HHHhcCCCcccccCchHHHHHHHHHHHHHHhhhccCCCCCCCCCcccccccccceEEeeEEEeCcCCCeeeeeeCCeeee
Q 008267          275 WWRHASNLASYEQQDAHEFFISMLDGIHEKVEKDQHKPRSQGNGDCCIAHRVFSGILRSDVMCMACGFTSTTFDPCVDFS  354 (572)
Q Consensus       275 l~~~~~~f~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~~~~~~~~~i~~~F~g~l~s~i~C~~C~~~s~~~e~f~~ls  354 (572)
                      +.  .+.|..+.||||+|||..||+.|++++......         +++.++|.|.+.+.++|..|++.+.+.++|++|+
T Consensus        76 ~~--~~~~~~~~qqDa~Ef~~~ll~~l~~~~~~~~~~---------~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~  144 (347)
T d1nbfa_          76 FG--WETLDSFMQHDVQELCRVLLDNVENKMKGTCVE---------GTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQ  144 (347)
T ss_dssp             TT--CCGGGGGSCBCHHHHHHHHHHHHHHHHTTSTTT---------THHHHHHCEEEEEEEEESSSCCEEEEEEEESSEE
T ss_pred             hc--hhhcchHHHHHHHHHHHHHHHHHHHHHhhcccc---------ccccceeceEEEEeEEeCCccceeeeeccccccc
Confidence            63  456888999999999999999999987654322         4689999999999999999999999999999999


Q ss_pred             eccCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHhcCCccccCCCCccccccccccceeEEEEEeecCC
Q 008267          355 LDLEPNQGSSMKTSSTKSNHSCNCEADGMNSSQNCGISTLMGCLDRFTRPERLGSDQKFFCQQCQVRQESLKQMSIRKLP  434 (572)
Q Consensus       355 L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP  434 (572)
                      |+++..                               .+++++|..++.+|.+++++.+.|..| +...+.|+..|.++|
T Consensus       145 L~i~~~-------------------------------~~~~~~l~~~~~~e~l~~~~~~~~~~~-~~~~~~k~~~i~~lP  192 (347)
T d1nbfa_         145 LSIKGK-------------------------------KNIFESFVDYVAVEQLDGDNKYDAGEH-GLQEAEKGVKFLTLP  192 (347)
T ss_dssp             EECTTC-------------------------------CBHHHHHHHHTCCEEECGGGCEECSTT-CEECEEEEEEEEECC
T ss_pred             cccccc-------------------------------cchhhhHHhhcchheeccccccccccC-cceeccEEEEEEecC
Confidence            999853                               489999999999999998876666655 557789999999999


Q ss_pred             ceEEEEEEEeEecCCCccccccceeeecCCCCCCccccchhhhccccCCCccCCCCCCCCCCCCCCccEEEEEEEeeeCC
Q 008267          435 LVSCFHIKRFEHSSVRKMSRKVDRYLQFPLSLDMAPYLSSSILRSRFGNRFFPFDGDESNTLNEPSSEFELFAVVTHTGK  514 (572)
Q Consensus       435 ~vL~i~lkRf~~~~~~~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avV~H~G~  514 (572)
                      +||+|||+||.++.......|++..|.||..|||++|+...                    .......|+|+|||+|.|+
T Consensus       193 ~vL~i~l~Rf~~~~~~~~~~K~~~~v~fp~~Ldl~~~~~~~--------------------~~~~~~~Y~L~~vI~H~G~  252 (347)
T d1nbfa_         193 PVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKT--------------------DPKDPANYILHAVLVHSGD  252 (347)
T ss_dssp             SEEEEEEECEEEETTTTEEEECCCCCBCCSEEECGGGBSSC--------------------CTTSCCEEEEEEEEEEEEE
T ss_pred             ChheEeeeeeeeccccCcccccCceEeeeeeeccccccccc--------------------cccCccceeeEEEEEecCC
Confidence            99999999999987677788999999999999999998643                    2334578999999999999


Q ss_pred             CCCCcEEEEEEe--CCcEEEEcCcceeeeCcccccC---------------CceeEEEEEEecc
Q 008267          515 LDAGHYVTYLRL--SNKWYKCDDAWITEVNENTVRA---------------AQGYMMFYVQKML  561 (572)
Q Consensus       515 ~~~GHY~ayvr~--~~~W~~~dD~~V~~v~~~~v~~---------------~~aYlLfY~r~~~  561 (572)
                      .++|||+||+|.  +++||+|||+.|++|++++|+.               .+||||||+|++.
T Consensus       253 ~~~GHY~~~~~~~~~~~W~~fnD~~V~~v~~~ev~~~~~g~~~~~~~~~~~~~aYiLfY~r~~~  316 (347)
T d1nbfa_         253 NHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRESK  316 (347)
T ss_dssp             TTEEEEEEEECTTSSSCCEEEETTEEEECCHHHHTGGGSCCCCSCCSTTTTEEEEEEEEEEGGG
T ss_pred             CCCCEEEEeeecCCCCEEEEEECCceEECCHHHHHHhhcCCCccccccCCCCCEEEEEEEecCc
Confidence            999999999995  5799999999999999999963               3699999999864
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2g45a1 g.44.1.5 (A:173-285) Ubiquitin carboxyl-terminal hydrolase 5, UBP5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2uzga1 g.44.1.5 (A:36-130) Ubiquitin carboxyl-terminal hydrolase 33, UBP33 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2idaa1 g.44.1.5 (A:1-102) Hypothetical protein RPA1320 {Rhodopseudomonas palustris [TaxId: 1076]} Back     information, alignment and structure