Citrus Sinensis ID: 008275

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-
MACLQLQQLSLRISVPKTIKNSFVKLLDVFVDQMFEFVDQPLLPSQRNFAPVDALREAVLVTNIDGEIPEDFPEGVYIRNGPNPLFGGLKSTKSMFGSSNHIWVEGEGMLHALYFKKETDGSWNVVYMNRHVESETFKQEKQRNRSSFLPAIEGDSLAILSAYLLNLLRFGKINKYISNTNIFEHAGKFYSVAENHMPQEIDIFTLETLGNWDVNGAWNRPFTSHPKKASGTGELVIMGVDATKPFVEIGVISADGDKLVHKVDLKLSRCSLCHEIGITQRYNVFLDYPLSIDLTRLAFGGPLIKYEHEGYAKIGIMPRYGDADSVKWFDVEPNCTFHIINCFEDGDEVIVWGCRALESIIPGPDLGLNKFEWFSKKFRHAELADESVDTSPDDVPLFSRVYEWRLNMQNGDVKETNLSGTKVSMDFPMINGGYTGIKNKYGYTQIVDSIASSASGMPKYGGLAKLSFEEPDNTESEELIKVEYHKFEENIFCTGGAFVPKGRGVEEDDGWIITFLHNEDTNISQVYIIDTKKFTDEPVAKITLSHRVPYGFHGAFMSIPVQTQKASRNES
ccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccEEEEEEEEccccccccccEEEEcccccccccccccccccccccccccccccEEEEEEEcccccccEEEEEEEEEccHHHHHHHHcccccccccccccHHHHHHHHHHHHHHccccccccccEEEEEEccEEEEEEEccccEEEcccccccccccccccccccccccccccccccccEEEEEEccccccEEEEEEEccccEEEEEEEEEccccccEEEEEccccEEEEEEccEEEcHHHHHcccccEEEccccccEEEEEEcccccccEEEEEEccEEEEEEcccEEcccEEEEEEEEEccccccccccccccHHHHHHHHcccccccccccccccccccccEEEEEEEEcccccEEEEEEccccccccccccccccccccccEEEEEEEccccccccccccccEEEEEEcccccccccEEEEEEEEEEEccccccccEEEEEcccccccccEEEEEEEEEcccccEEEEEEEccccccccEEEEEccccccccccccccccccccHHHHHccc
cccHHHccccEEEcccccHHHHHHHHHHHHHccccccccccccEccccccccccccccccccEEEEEccccccccEEEEcccccccccccccEEEccccccEEEccccEEEEEEEEcccccccEEEEEEEEEEcHHHHHHHHccccccccccccccHHHHHHHHHHcccccccccccccEEEEEEcccEEEEEcccccEEEEcccccEccEEcccccEcccccccccccccccEEEEEccccccccEEEEEEcccccccccccccccccccEEEEEEEcccEEEEccccEEEcHHHHHcccccEEEccccccEEEEEEcccccccEEEEEccccEEEEEEEEEcccccEEEEEEEcccccccccHHHHHHHHHHHHcccccccccccccccccccccccEEEEEEEEcccccEEEEEccccccccccccEcccccccccEEEEEEEEccccccccccccccEEEEEEccccccccEEEEEEEEEEEccccccccccEEEcccccccccccEEEEEEEEccccccEEEEEEccccccccEEEEEEcccccccccEEEEcHHHHHHHHHHHcc
maclqlqqLSLRISVPKTIKNSFVKLLDVFVDQMFefvdqpllpsqrnfapvDALREAVLVtnidgeipedfpegvyirngpnplfgglkstksmfgssnhiwvEGEGMLHALYFKketdgswnvVYMNRHVESETFKQEKqrnrssflpaiegDSLAILSAYLLNLLRFGKINKYISNTNIFEHAGKFYSVaenhmpqeidiftletlgnwdvngawnrpftshpkkasgtgelvimgvdatkpfVEIGVIsadgdklvhkvdlklsrcslcheigitqrynvfldyplsidltrlafggplikyehegyakigimprygdadsvkwfdvepnctfhiincfedgdeVIVWGCRAlesiipgpdlglnkFEWFSKKFrhaeladesvdtspddvplfSRVYEWRLNmqngdvketnlsgtkvsmdfpminggytgiknkygYTQIVDSIassasgmpkygglaklsfeepdnteseELIKVEYHKfeenifctggafvpkgrgveeddgWIITFLhnedtnisqvyiidtkkftdepvakitlshrvpygfhgafmsipvqtqkasrnes
MACLQLQQLSLRISVPKTIKNSFVKLLDVFVDQMFEFVDQPLLPSQRNFAPVDALREAVLVTnidgeipedfpegvYIRNGPNPLFGGLKSTKSMFGSSNHIWVEGEGMLHALYFKKETDGSWNVVYMNRHVEsetfkqekqrnRSSFLPAIEGDSLAILSAYLLNLLRFGKINKYISNTNIFEHAGKFYSVAENHMPQEIDIFTLETLGNWDVNGAWNRPFTSHPKKASGTGELVIMGVDATKPFVEIGVISADGDKLVHKVDLKLSRCSLCHEIGITQRYNVFLDYPLSIDLTRLAFGGPLIKYEHEGYAKIGIMPRYGDADSVKWFDVEPNCTFHIINCFEDGDEVIVWGCRALESIIPGPDLGLNKFEWFSKKFRHaeladesvdtspddvPLFSRVYEWRLnmqngdvketnlsgtkvsmdFPMINGGYTGIKNKYGYTQIVDSIASSASGMPKYGGLAKLSFEEPDNTESEELIKVEYHKFEENIFCTGGAFVPKGRGVEEDDGWIITFlhnedtnisQVYIIDTKKFTDEPVAKITLSHRVPYGFHGAfmsipvqtqkasrnes
MACLQLQQLSLRISVPKTIKNSFVKLLDVFVDQMFEFVDQPLLPSQRNFAPVDALREAVLVTNIDGEIPEDFPEGVYIRNGPNPLFGGLKSTKSMFGSSNHIWVEGEGMLHALYFKKETDGSWNVVYMNRHVESETFKQEKQRNRSSFLPAIEGDslailsayllnllRFGKINKYISNTNIFEHAGKFYSVAENHMPQEIDIFTLETLGNWDVNGAWNRPFTSHPKKASGTGELVIMGVDATKPFVEIGVISADGDKLVHKVDLKLSRCSLCHEIGITQRYNVFLDYPLSIDLTRLAFGGPLIKYEHEGYAKIGIMPRYGDADSVKWFDVEPNCTFHIINCFEDGDEVIVWGCRALESIIPGPDLGLNKFEWFSKKFRHAELADESVDTSPDDVPLFSRVYEWRLNMQNGDVKETNLSGTKVSMDFPMINGGYTGIKNKYGYTQIVDSIASSASGMPKYGGLAKLSFEEPDNTESEELIKVEYHKFEENIFCTGGAFVPKGRGVEEDDGWIITFLHNEDTNISQVYIIDTKKFTDEPVAKITLSHRVPYGFHGAFMSIPVQTQKASRNES
***LQLQQLSLRISVPKTIKNSFVKLLDVFVDQMFEFVDQPLLPSQRNFAPVDALREAVLVTNIDGEIPEDFPEGVYIRNGPNPLFGGLKSTKSMFGSSNHIWVEGEGMLHALYFKKETDGSWNVVYMNRHV***************FLPAIEGDSLAILSAYLLNLLRFGKINKYISNTNIFEHAGKFYSVAENHMPQEIDIFTLETLGNWDVNGAWNRPFTSHPKKASGTGELVIMGVDATKPFVEIGVISADGDKLVHKVDLKLSRCSLCHEIGITQRYNVFLDYPLSIDLTRLAFGGPLIKYEHEGYAKIGIMPRYGDADSVKWFDVEPNCTFHIINCFEDGDEVIVWGCRALESIIPGPDLGLNKFEWFSKKFRHAELA*********DVPLFSRVYEWRLNMQNGDVKETNLSGTKVSMDFPMINGGYTGIKNKYGYTQIVDSIA***************************LIKVEYHKFEENIFCTGGAFVPKGRGVEEDDGWIITFLHNEDTNISQVYIIDTKKFTDEPVAKITLSHRVPYGFHGAFMSIP***********
*******************KNSFVKLLDVFVDQMFEFVDQPLLPSQRNFAPVDALREAVLVTNIDGEIPEDFPEGVYIRNGPNPLFGGLKSTKSMFGSSNHIWVEGEGMLHALYFKKETDGSWNVVYMNRHVESETFKQEKQRNRSSFLPAIEGDSLAILSAYLLNLLRFGKINKYISNTNIFEHAGKFYSVAENHMPQEIDIFTLETLGNWDVNGAWNRPFTSHPKKASGTGELVIMGVDATKPFVEIGVISADGDKLVHKVDLKLSRCSLCHEIGITQRYNVFLDYPLSIDLTRLAFGGPLIKYEHEGYAKIGIMPRYGDADSVKWFDVEPNCTFHIINCFEDGDEVIVWGCRALESIIPGPDLGLNKFEWFSKKFRHAELADESVDTSPDDVPLFSRVYEWRLNMQNGDVKETNLSGTKVSMDFPMINGGYTGIKNKYGYTQIVDSIASSASGMPKYGGLAKLSFEEPDNTESEELIKVEYHKFEENIFCTGGAFVPKGRGVEEDDGWIITFLHNEDTNISQVYIIDTKKFTDEPVAKITLSHRVPYGFHGAFMSI************
MACLQLQQLSLRISVPKTIKNSFVKLLDVFVDQMFEFVDQPLLPSQRNFAPVDALREAVLVTNIDGEIPEDFPEGVYIRNGPNPLFGGLKSTKSMFGSSNHIWVEGEGMLHALYFKKETDGSWNVVYMNRHVESE*********RSSFLPAIEGDSLAILSAYLLNLLRFGKINKYISNTNIFEHAGKFYSVAENHMPQEIDIFTLETLGNWDVNGAWNRPFTSHPKKASGTGELVIMGVDATKPFVEIGVISADGDKLVHKVDLKLSRCSLCHEIGITQRYNVFLDYPLSIDLTRLAFGGPLIKYEHEGYAKIGIMPRYGDADSVKWFDVEPNCTFHIINCFEDGDEVIVWGCRALESIIPGPDLGLNKFEWFSKKFRHAE*********PDDVPLFSRVYEWRLNMQNGDVKETNLSGTKVSMDFPMINGGYTGIKNKYGYTQIVDSIASSASGMPKYGGLAKLSFEEPDNTESEELIKVEYHKFEENIFCTGGAFVPKGRGVEEDDGWIITFLHNEDTNISQVYIIDTKKFTDEPVAKITLSHRVPYGFHGAFMSIPV**********
*ACLQLQQLSLRISVPKTIKNSFVKLLDVFVDQMFEFVDQPLLPSQRNFAPVDALREAVLVTNIDGEIPEDFPEGVYIRNGPNPLFGGLKSTKSMFGSSNHIWVEGEGMLHALYFKKETDGSWNVVYMNRHVESETFKQEKQRNRSSFLPAIEGDSLAILSAYLLNLLRFGKINKYISNTNIFEHAGKFYSVAENHMPQEIDIFTLETLGNWDVNGAWNRPFTSHPKKASGTGELVIMGVDATKPFVEIGVISADGDKLVHKVDLKLSRCSLCHEIGITQRYNVFLDYPLSIDLTRLAFGGPLIKYEHEGYAKIGIMPRYGDADSVKWFDVEPNCTFHIINCFEDGDEVIVWGCRALESIIPGPDLGLNKFEWFSKKFRHAELADESVDTS*DDVPLFSRVYEWRLNMQNGDVKETNLSGTKVSMDFPMINGGYTGIKNKYGYTQIVDSIASSASGMPKYGGLAKLSFEEPDNTESEELIKVEYHKFEENIFCTGGAFVPKGRGVEEDDGWIITFLHNEDTNISQVYIIDTKKFTDEPVAKITLSHRVPYGFHGAFMSIPVQTQKAS****
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MACLQLQQLSLRISVPKTIKNSFVKLLDVFVDQMFEFVDQPLLPSQRNFAPVDALREAVLVTNIDGEIPEDFPEGVYIRNGPNPLFGGLKSTKSMFGSSNHIWVEGEGMLHALYFKKETDGSWNVVYMNRHVESETFKQEKQRNRSSFLPAIEGDSLAILSAYLLNLLRFGKINKYISNTNIFEHAGKFYSVAENHMPQEIDIFTLETLGNWDVNGAWNRPFTSHPKKASGTGELVIMGVDATKPFVEIGVISADGDKLVHKVDLKLSRCSLCHEIGITQRYNVFLDYPLSIDLTRLAFGGPLIKYEHEGYAKIGIMPRYGDADSVKWFDVEPNCTFHIINCFEDGDEVIVWGCRALESIIPGPDLGLNKFEWFSKKFRHAELADESVDTSPDDVPLFSRVYEWRLNMQNGDVKETNLSGTKVSMDFPMINGGYTGIKNKYGYTQIVDSIASSASGMPKYGGLAKLSFEEPDNTESEELIKVEYHKFEENIFCTGGAFVPKGRGVEEDDGWIITFLHNEDTNISQVYIIDTKKFTDEPVAKITLSHRVPYGFHGAFMSIPVQTQKASRNES
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query571 2.2.26 [Sep-21-2011]
Q8LP17541 Carotenoid 9,10(9',10')-c N/A no 0.849 0.896 0.306 8e-58
Q84KG5546 Carotenoid 9,10(9',10')-c N/A no 0.854 0.893 0.305 9e-57
O65572538 Carotenoid 9,10(9',10')-c yes no 0.845 0.897 0.301 1e-55
Q94IR2543 Carotenoid 9,10(9',10')-c N/A no 0.856 0.900 0.302 2e-55
Q9M9F5657 9-cis-epoxycarotenoid dio no no 0.777 0.675 0.285 6e-40
Q9C6Z1589 Probable 9-cis-epoxycarot no no 0.782 0.758 0.281 4e-39
O24592604 9-cis-epoxycarotenoid dio N/A no 0.784 0.741 0.273 1e-38
Q9M6E8615 9-cis-epoxycarotenoid dio N/A no 0.775 0.720 0.287 2e-38
Q9LRR7599 9-cis-epoxycarotenoid dio no no 0.777 0.741 0.286 3e-36
O49675595 Probable carotenoid cleav no no 0.833 0.8 0.252 2e-35
>sp|Q8LP17|CCD1_PEA Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Pisum sativum GN=CCD1 PE=2 SV=1 Back     alignment and function desciption
 Score =  225 bits (573), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 170/555 (30%), Positives = 268/555 (48%), Gaps = 70/555 (12%)

Query: 24  VKLLDVFVDQMFEFVDQPLLPSQRNFAPVDALREAVLVTNIDGEIPEDFPEGVYIRNGPN 83
           V LL+  + ++F     P      NFAPV      V    + G +P D   G ++R GPN
Sbjct: 27  VDLLEKIIVKLFYDSSLPHHWLSGNFAPVKDETPPVKDLTVQGHLP-DCLNGEFVRVGPN 85

Query: 84  PLFGGLKSTKSMFGSSNHIWVEGEGMLHALYFKKETDGSWNVVYMNRHVESETFKQEKQR 143
           P F  +         + + W +G+GM+H L  K   DG  +  Y++R V++  FKQE+  
Sbjct: 86  PKFSPV---------AGYHWFDGDGMIHGLRIK---DGKAS--YVSRFVKTSRFKQEEYF 131

Query: 144 NRSSFLPAIEGDSLAILSAYLLNLLRFGKINKYI--------SNTNIFEHAGKFYSVAEN 195
           N S F+    GD   +    ++N+       K +        +NT +  H  K  +++E 
Sbjct: 132 NGSKFMKI--GDLKGLFGLLMVNMQMLRAKLKILDVSYGHGTANTALVYHHQKLLALSEG 189

Query: 196 HMPQEIDIFT---LETLGNWDVNGAWNRPFTSHPKKASGTGELVIMGVDATKPFVEIGVI 252
             P  I +F    L+TLG  D +      FT+HPK    TGE+   G   T P+V   VI
Sbjct: 190 DKPYAIKVFEDGDLQTLGMLDYDKRLGHNFTAHPKVDPFTGEMFTFGYSHTAPYVTYRVI 249

Query: 253 SADGDKLVHKVDLKLSRCSLCHEIGITQRYNVFLDYPLSIDLTRLAFGGPLI-KYEHEGY 311
           S DG  +   V + +S   + H+  IT+ Y++F+D PL      +     LI  ++    
Sbjct: 250 SKDG-FMQDPVPITISDPVMMHDFAITENYSIFMDLPLYFRPKEMVKNKTLIFSFDSTKK 308

Query: 312 AKIGIMPRYGDADS-VKWFDVEPNC-TFHIINCFEDGDEVIVWGCRALESIIPGPDLGLN 369
           A+ G++PRY   D  ++WF++ PNC  FH  N +E+ DE+++  CR     +  P+L   
Sbjct: 309 ARFGVLPRYAKDDKHIRWFEL-PNCFIFHNANAWEEEDEIVLITCR-----LENPNL--- 359

Query: 370 KFEWFSKKFRHAELADESVDTSPDDVPLFSRVYEWRLNMQNGDVKETNLSGTKVSMDFPM 429
                       ++   +V    D+    + +YE R NM+ G+  +  LS + V  DFP 
Sbjct: 360 ------------DVVGGAVKEKLDNFS--NELYEMRFNMKTGEASQKKLSASTV--DFPR 403

Query: 430 INGGYTGIKNKYGYTQIVDSIASSASGMPKYGGLAKLSFE-EPDNTESEELIKVEYHKFE 488
           +N  YTG K +Y Y   +DSIA       K  G+ K     EPD+ +++  +        
Sbjct: 404 VNESYTGRKQRYVYGTTLDSIA-------KVTGIIKFDLHAEPDSGKTKLEVGGNVQGLY 456

Query: 489 E---NIFCTGGAFVPK--GRGVEEDDGWIITFLHNEDTNISQVYIIDTKKFTDEPVAKIT 543
           +     F +   +VP+  G   EEDDG++I F+H+E+T  S V++ID K+ + EPVA + 
Sbjct: 457 DLGPGRFGSEAVYVPRVPGTDSEEDDGYLIFFVHDENTGKSFVHVIDAKRMSAEPVAVVE 516

Query: 544 LSHRVPYGFHGAFMS 558
           L  RVPYGFH  F++
Sbjct: 517 LPQRVPYGFHAFFVT 531
Cleaves a variety of carotenoids at the 9-10 and 9'-10' double bonds. Probably not involved in abscisic acid biosynthesis.
Pisum sativum (taxid: 3888)
EC: 1EC: .EC: 1EC: 4EC: .EC: 9EC: 9EC: .EC: nEC: 4
>sp|Q84KG5|CCD_CROSA Carotenoid 9,10(9',10')-cleavage dioxygenase OS=Crocus sativus GN=CCD PE=1 SV=1 Back     alignment and function description
>sp|O65572|CCD1_ARATH Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Arabidopsis thaliana GN=CCD1 PE=1 SV=2 Back     alignment and function description
>sp|Q94IR2|CCD1_PHAVU Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Phaseolus vulgaris GN=CCD1 PE=1 SV=1 Back     alignment and function description
>sp|Q9M9F5|NCED9_ARATH 9-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic OS=Arabidopsis thaliana GN=NCED9 PE=2 SV=1 Back     alignment and function description
>sp|Q9C6Z1|NCED5_ARATH Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic OS=Arabidopsis thaliana GN=NCED5 PE=1 SV=1 Back     alignment and function description
>sp|O24592|NCED1_MAIZE 9-cis-epoxycarotenoid dioxygenase 1, chloroplastic OS=Zea mays GN=VP14 PE=1 SV=2 Back     alignment and function description
>sp|Q9M6E8|NCED1_PHAVU 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic OS=Phaseolus vulgaris GN=NCED1 PE=2 SV=1 Back     alignment and function description
>sp|Q9LRR7|NCED3_ARATH 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic OS=Arabidopsis thaliana GN=NCED3 PE=2 SV=1 Back     alignment and function description
>sp|O49675|CCD4_ARATH Probable carotenoid cleavage dioxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=CCD4 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query571
255550896577 9-cis-epoxycarotenoid dioxygenase, putat 0.975 0.965 0.710 0.0
296081853 1054 unnamed protein product [Vitis vinifera] 0.977 0.529 0.666 0.0
359476032590 PREDICTED: carotenoid 9,10(9',10')-cleav 0.975 0.944 0.673 0.0
147765318 1199 hypothetical protein VITISV_020097 [Viti 0.977 0.465 0.663 0.0
356518342669 PREDICTED: carotenoid 9,10(9',10')-cleav 0.935 0.798 0.663 0.0
359476034597 PREDICTED: carotenoid 9,10(9',10')-cleav 0.975 0.932 0.636 0.0
296081855567 unnamed protein product [Vitis vinifera] 0.977 0.984 0.631 0.0
224141747537 predicted protein [Populus trichocarpa] 0.924 0.983 0.645 0.0
356510021569 PREDICTED: carotenoid 9,10(9',10')-cleav 0.926 0.929 0.640 0.0
356518340577 PREDICTED: carotenoid 9,10(9',10')-cleav 0.928 0.918 0.639 0.0
>gi|255550896|ref|XP_002516496.1| 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis] gi|223544316|gb|EEF45837.1| 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  845 bits (2182), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/563 (71%), Positives = 474/563 (84%), Gaps = 6/563 (1%)

Query: 5   QLQQLSLRISVPKTIKNSFVKLLDVFVDQMFEFVDQPLLPSQRNFAPVDALREAVLVTNI 64
           +LQ   L+I V K IKN+ +KLLD FVD +F FVD  LLPSQ N APVD L++AVLVT I
Sbjct: 15  ELQVHPLQIDVSKAIKNASLKLLDAFVDSVFVFVDHSLLPSQSNLAPVDELKKAVLVTGI 74

Query: 65  DGEIPEDFPEGVYIRNGPNPLFGGLKSTKSMFGSSNHIWVEGEGMLHALYFKKETDGSWN 124
           +G +P+DFP GVYIRNGPNPLFGGLKST S+FG S++IWVEGEGMLH LYF K  DGSW 
Sbjct: 75  EGTVPDDFPGGVYIRNGPNPLFGGLKSTVSLFGRSSNIWVEGEGMLHVLYFNKSIDGSWT 134

Query: 125 VVYMNRHVESETFKQEKQRNRSSFLPAIEGDSLAILSAYLLNLLRFGKINKYISNTNIFE 184
           V+Y NRHVE+ETFK EK RN+ SFLPAIEG+S AILSA+ LNLLRFGKINK++SNTN+FE
Sbjct: 135 VLYNNRHVETETFKLEKHRNKPSFLPAIEGNSAAILSAFFLNLLRFGKINKHLSNTNVFE 194

Query: 185 HAGKFYSVAENHMPQEIDIFTLETLGNWDVNGAWNRPFTSHPKKASGTGELVIMGVDATK 244
           HAG+FYSVAEN++PQEIDIFTL+TLGNWDVNG+WNRPFTSHPK+  GTGELVIMGVDATK
Sbjct: 195 HAGRFYSVAENYIPQEIDIFTLKTLGNWDVNGSWNRPFTSHPKRVPGTGELVIMGVDATK 254

Query: 245 PFVEIGVISADGDKLVHKVDLKLSRCSLCHEIGITQRYNVFLDYPLSIDLTRLAFGGPLI 304
           PF+E+GVISADG +LVHK DL+ +RC+LCH+IG+T+RYNV LD+ L+ID+TRL  GGPLI
Sbjct: 255 PFMEVGVISADGKRLVHKADLRFNRCTLCHDIGVTERYNVILDFALTIDITRLLRGGPLI 314

Query: 305 KYEHEGYAKIGIMPRYGDADSVKWFDVEPNCTFHIINCFEDGDEVIVWGCRALESIIPGP 364
           +Y  E Y++IGIMPRYGDA+S+KWF VEPNCTFHI+NCFEDGDEV+VWGC+AL+SIIPGP
Sbjct: 315 QYNKEEYSRIGIMPRYGDANSIKWFKVEPNCTFHILNCFEDGDEVVVWGCKALDSIIPGP 374

Query: 365 DLGLNKFEWFSKKFRHAELAD-ESVDTSPDDVPL-FSRVYEWRLNMQNGDVKETNLSGTK 422
           D GL+KFEWFS++FR  + +  E +  S ++V L FSR +EWRLNMQ G+VKE  L+GT+
Sbjct: 375 DKGLDKFEWFSRRFRPIQSSSVEEITNSSNEVGLSFSRCHEWRLNMQTGEVKEKYLTGTE 434

Query: 423 VSMDFPMINGGYTGIKNKYGYTQIVDSIASSASGMPKYGGLAKLSFEEPDNTESEELIKV 482
            SMDFP+IN  +TG++NKYGYTQ+VDS AS  SGM KYGGLAKL FEE +N + +E+IKV
Sbjct: 435 FSMDFPIINADFTGLRNKYGYTQVVDSEASYVSGMAKYGGLAKLYFEEGEN-KFDEVIKV 493

Query: 483 EYHKFEENIFCTGGAFVPKGRGV-EEDDGWIITFLHNEDTNISQVYIIDTKKFTDEPVAK 541
           EYHKFE+N FCTG AFVPK     EEDDGWIITF+HNEDTN+S+ YIID KKFT EPVAK
Sbjct: 494 EYHKFEKNTFCTGAAFVPKTASTPEEDDGWIITFVHNEDTNVSKAYIIDAKKFTAEPVAK 553

Query: 542 ITLSHRVPYGFHGAFMSIPVQTQ 564
            TL  RVPYGFHG F+  P Q Q
Sbjct: 554 FTLPSRVPYGFHGVFL--PTQLQ 574

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296081853|emb|CBI20858.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359476032|ref|XP_002281310.2| PREDICTED: carotenoid 9,10(9',10')-cleavage dioxygenase 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147765318|emb|CAN66950.1| hypothetical protein VITISV_020097 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356518342|ref|XP_003527838.1| PREDICTED: carotenoid 9,10(9',10')-cleavage dioxygenase-like [Glycine max] Back     alignment and taxonomy information
>gi|359476034|ref|XP_002281333.2| PREDICTED: carotenoid 9,10(9',10')-cleavage dioxygenase 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|296081855|emb|CBI20860.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224141747|ref|XP_002324226.1| predicted protein [Populus trichocarpa] gi|222865660|gb|EEF02791.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356510021|ref|XP_003523739.1| PREDICTED: carotenoid 9,10(9',10')-cleavage dioxygenase 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356518340|ref|XP_003527837.1| PREDICTED: carotenoid 9,10(9',10')-cleavage dioxygenase 1-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query571
TAIR|locus:2087418538 CCD1 "carotenoid cleavage diox 0.581 0.617 0.299 6e-52
TAIR|locus:2202492589 NCED5 "nine-cis-epoxycarotenoi 0.534 0.517 0.295 8.1e-39
TAIR|locus:2091652599 NCED3 "nine-cis-epoxycarotenoi 0.500 0.477 0.284 1e-35
TAIR|locus:2032085657 NCED9 "nine-cis-epoxycarotenoi 0.730 0.634 0.264 4.2e-33
TAIR|locus:2134796595 NCED4 "nine-cis-epoxycarotenoi 0.541 0.519 0.258 1.5e-32
TAIR|locus:2124489583 NCED2 "nine-cis-epoxycarotenoi 0.532 0.521 0.272 1.4e-30
TAIR|locus:2093751577 NCED6 "nine-cis-epoxycarotenoi 0.511 0.506 0.257 3.5e-28
UNIPROTKB|O06785501 MT0683 "Carotenoid cleavage ox 0.199 0.227 0.284 8.2e-22
ZFIN|ZDB-GENE-060421-7448555 bco2b "beta-carotene oxygenase 0.527 0.542 0.271 3.3e-20
UNIPROTKB|Q53353485 Q53353 "Lignostilbene-alpha,be 0.397 0.468 0.288 2.6e-19
TAIR|locus:2087418 CCD1 "carotenoid cleavage dioxygenase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 345 (126.5 bits), Expect = 6.0e-52, Sum P(2) = 6.0e-52
 Identities = 112/374 (29%), Positives = 177/374 (47%)

Query:    13 ISV-PKTIKNSFVKLLDVF---VDQMFEFVDQPLLPSQRNFAPVDALREAVLVTNIDGEI 68
             ISV P+  K    KLLD+    V ++      PL     NFAP+      V    + G +
Sbjct:    12 ISVHPRPSKGFSSKLLDLLERLVVKLMHDASLPLHYLSGNFAPIRDETPPVKDLPVHGFL 71

Query:    69 PEDFPEGVYIRNGPNPLFGGLKSTKSMFGSSNHIWVEGEGMLHALYFKKETDGSWNVVYM 128
             PE    G ++R GPNP F  +         + + W +G+GM+H +  K   DG     Y+
Sbjct:    72 PECL-NGEFVRVGPNPKFDAV---------AGYHWFDGDGMIHGVRIK---DGK--ATYV 116

Query:   129 NRHVESETFKQEKQRNRSSFLPA--IEGDXXXXXXXXXXXXXRFGKI--NKY---ISNTN 181
             +R+V++   KQE+    + F+    ++G              +  KI  N Y    +NT 
Sbjct:   117 SRYVKTSRLKQEEFFGAAKFMKIGDLKGFFGLLMVNVQQLRTKL-KILDNTYGNGTANTA 175

Query:   182 IFEHAGKFYSVAENHMPQEIDIFT---LETLGNWDVNGAWNRPFTSHPKKASGTGELVIM 238
             +  H GK  ++ E   P  I +     L+TLG  D +      FT+HPK    TGE+   
Sbjct:   176 LVYHHGKLLALQEADKPYVIKVLEDGDLQTLGIIDYDKRLTHSFTAHPKVDPVTGEMFTF 235

Query:   239 GVDATKPFVEIGVISADGDKLVHK-VDLKLSRCSLCHEIGITQRYNVFLDYPLSIDLTRL 297
             G   T P++   VIS DG  ++H  V + +S   + H+  IT+ Y +F+D P+      +
Sbjct:   236 GYSHTPPYLTYRVISKDG--IMHDPVPITISEPIMMHDFAITETYAIFMDLPMHFRPKEM 293

Query:   298 AFGGPLI-KYEHEGYAKIGIMPRYG-DADSVKWFDVEPNC-TFHIINCFEDGDEVIVWGC 354
                  +I  ++    A+ G++PRY  D   ++WF++ PNC  FH  N +E+ DEV++  C
Sbjct:   294 VKEKKMIYSFDPTKKARFGVLPRYAKDELMIRWFEL-PNCFIFHNANAWEEEDEVVLITC 352

Query:   355 RALESIIPGPDLGL 368
             R LE+    PDL +
Sbjct:   353 R-LEN----PDLDM 361
GO:0005737 "cytoplasm" evidence=ISM;IDA
GO:0009414 "response to water deprivation" evidence=IEP
GO:0016118 "carotenoid catabolic process" evidence=IDA
GO:0045549 "9-cis-epoxycarotenoid dioxygenase activity" evidence=IDA
GO:0005773 "vacuole" evidence=IDA
GO:0016121 "carotene catabolic process" evidence=IMP
GO:0016124 "xanthophyll catabolic process" evidence=IMP
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0006098 "pentose-phosphate shunt" evidence=RCA
GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA
GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA
GO:0010304 "PSII associated light-harvesting complex II catabolic process" evidence=RCA
GO:0015995 "chlorophyll biosynthetic process" evidence=RCA
GO:0016117 "carotenoid biosynthetic process" evidence=RCA
GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA
GO:0044242 "cellular lipid catabolic process" evidence=RCA
TAIR|locus:2202492 NCED5 "nine-cis-epoxycarotenoid dioxygenase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2091652 NCED3 "nine-cis-epoxycarotenoid dioxygenase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2032085 NCED9 "nine-cis-epoxycarotenoid dioxygenase 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2134796 NCED4 "nine-cis-epoxycarotenoid dioxygenase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2124489 NCED2 "nine-cis-epoxycarotenoid dioxygenase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2093751 NCED6 "nine-cis-epoxycarotenoid dioxygenase 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|O06785 MT0683 "Carotenoid cleavage oxygenase" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060421-7448 bco2b "beta-carotene oxygenase 2b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q53353 Q53353 "Lignostilbene-alpha,beta-dioxygenase isozyme I" [Sphingomonas paucimobilis (taxid:13689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O65572CCD1_ARATH1, ., 1, 4, ., 9, 9, ., n, 40.30100.84580.8977yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.990.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query571
pfam03055469 pfam03055, RPE65, Retinal pigment epithelial membr 1e-123
COG3670490 COG3670, COG3670, Lignostilbene-alpha,beta-dioxyge 6e-78
PLN02491545 PLN02491, PLN02491, carotenoid 9,10(9',10')-cleava 7e-68
PLN02258590 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygen 7e-58
PLN02969610 PLN02969, PLN02969, 9-cis-epoxycarotenoid dioxygen 3e-16
>gnl|CDD|217340 pfam03055, RPE65, Retinal pigment epithelial membrane protein Back     alignment and domain information 
 Score =  371 bits (955), Expect = e-123
 Identities = 165/516 (31%), Positives = 237/516 (45%), Gaps = 55/516 (10%)

Query: 48  NFAPVDALREAVLVTNIDGEIPEDFPEGVYIRNGPNPLFGGLKSTKSMFGSSNHIWVEGE 107
           NFAPV           ++GEIP D   G   RNGP PL  G        G   H W +G+
Sbjct: 1   NFAPVREELPDAEDLEVEGEIPADL-NGTLYRNGPGPLERG--------GFRYHHWFDGD 51

Query: 108 GMLHALYFKKETDGSWNVVYMNRHVESETFKQEKQRNRSSFLPAIEGDSLAILSAYLLNL 167
           GMLHA  F+   DG   V Y NR V +E +K E+   R  +                   
Sbjct: 52  GMLHAFRFE---DGR--VTYRNRFVRTEGYKAERAAGRRLYPGEF---GTLKPDPCKNIF 103

Query: 168 LRFGKINKYISNTNIFEHAGKFYSVAENHMPQEIDIFTLETLGNWDVNGAWNR--PFTSH 225
            R     K ++NTN+  H G+  ++ E  +P  +D  TLETLG +D  G      PFT+H
Sbjct: 104 PRVPGKLKNVANTNVVYHGGRLLALWEAGLPYRLDPETLETLGRYDFGGKLKPGPPFTAH 163

Query: 226 PKKASGTGELVIMGVD--ATKPFVEIGVISADGDKLVHKVDLKLSRCSLCHEIGITQRYN 283
           PK    TGELV  G+      P++    + ADG  +       L   S+ H+  IT+ Y 
Sbjct: 164 PKVDPVTGELVNFGLSLGPKPPYLTYYEVDADGKLVREVPIFSLPGPSMIHDFAITENYV 223

Query: 284 VFLDYPLSIDLTRLAFGG--PLIKYEHEGYAKIGIMPRYGDADSVKWFDVEPNCTFHIIN 341
           +F D PL  D  RL  GG    ++++ E   + G++PR G    V+WF+  P   FH  N
Sbjct: 224 IFPDLPLVFDPLRLLLGGRADPLRWDPEKPTRFGVIPRRGGKSDVRWFEAPPCFVFHTAN 283

Query: 342 CFEDGDEVIVWGCRALESIIPGPDLGLNKFEWFSKKFRHAELADESVDTSPDDVPLFSRV 401
            +E+G E+++  CR        PD       ++    R           +  D    SR+
Sbjct: 284 AWEEGGEIVLDACR-----YDDPDFL---DPFYLDNLR---------PDAFADKKPRSRL 326

Query: 402 YEWRLNMQNGD-VKETNLSGTKVSMDFPMINGGYTGIKNKYGYTQIVDSIASSASGMPKY 460
             WRL+++ G  V E  L       +FP IN  Y G K +Y Y    D       G   +
Sbjct: 327 TRWRLDLKTGGDVTEEVLL--DRPCEFPRINPRYVGRKYRYVYMAAADP---RPPGSGPF 381

Query: 461 GGLAKLSFEEPDNTESEELIKVEYHKFEENIFCTGGAFVPKGRGVEEDDGWIITFLHNED 520
            GL K+      + E+ E   V+   F    +     FVP+    +EDDGW+++ +++ED
Sbjct: 382 DGLVKV------DLETGE---VQVWSFGPGCYPGEPIFVPRPGAADEDDGWLLSVVYDED 432

Query: 521 TNISQVYIIDTKKFTDEPVAKITLSHRVPYGFHGAF 556
           T  S++ I+D K  T+ PVA++ L HRVPYGFHG +
Sbjct: 433 TGRSELLILDAKDLTEGPVARVELPHRVPYGFHGTW 468

This family represents a retinal pigment epithelial membrane receptor which is abundantly expressed in retinal pigment epithelium, and binds plasma retinal binding protein. The family also includes the sequence related neoxanthin cleavage enzyme in plants and lignostilbene-alpha,beta-dioxygenase in bacteria. Length = 469
>gnl|CDD|226196 COG3670, COG3670, Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>gnl|CDD|215271 PLN02491, PLN02491, carotenoid 9,10(9',10')-cleavage dioxygenase Back     alignment and domain information
>gnl|CDD|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED Back     alignment and domain information
>gnl|CDD|215523 PLN02969, PLN02969, 9-cis-epoxycarotenoid dioxygenase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 571
PLN02491545 carotenoid 9,10(9',10')-cleavage dioxygenase 100.0
PLN02258590 9-cis-epoxycarotenoid dioxygenase NCED 100.0
COG3670490 Lignostilbene-alpha,beta-dioxygenase and related e 100.0
PF03055486 RPE65: Retinal pigment epithelial membrane protein 100.0
PLN02969610 9-cis-epoxycarotenoid dioxygenase 100.0
KOG1285582 consensus Beta, beta-carotene 15,15'-dioxygenase a 100.0
KOG1285582 consensus Beta, beta-carotene 15,15'-dioxygenase a 99.93
>PLN02491 carotenoid 9,10(9',10')-cleavage dioxygenase Back     alignment and domain information 
Probab=100.00  E-value=5.9e-119  Score=985.31  Aligned_cols=499  Identities=31%  Similarity=0.541  Sum_probs=417.9

Q ss_pred             eeeccccchhhHHHHHHHHHhhhhhc---cCCCCCCCCCCcccccccccceecceEeecCCCCCCCCeEEeeCCCCCCCC
Q 008275           12 RISVPKTIKNSFVKLLDVFVDQMFEF---VDQPLLPSQRNFAPVDALREAVLVTNIDGEIPEDFPEGVYIRNGPNPLFGG   88 (571)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~p~~~~~~~fapv~e~~~~~~~~~V~G~IP~~l~~Gt~~RnGP~~~~~~   88 (571)
                      ....++.++.++...+|.+.+.+.++   ..+|..+++|||+|+.+|..+..++.|+|+||++| +|+|||||||+++.+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~fapv~~E~~~~~~l~V~G~IP~~L-~Gt~~RNGPnp~~~~   94 (545)
T PLN02491         16 VVVNPRPSKGLTSKAVDLLEKLIVKLMHDASQPLHYLSGNFAPVRDETPPVKDLPVRGHLPECL-NGEFVRVGPNPKFSP   94 (545)
T ss_pred             eeccCchhhhhhHHHHHHHHHHHHhhccCCCCCcccccCCCcCccccCCcccCcEEEeeCCCcC-CeEEEEeCCCCCCCC
Confidence            34667788888888999999988765   44788889999999987765566789999999987 999999999987654


Q ss_pred             CccccccCCccccccccCCCcEEEEEeecCCCCceeEEEEeeeecchhHHHHHhcCCCccCCcccCChhhhHHHHHH---
Q 008275           89 LKSTKSMFGSSNHIWVEGEGMLHALYFKKETDGSWNVVYMNRHVESETFKQEKQRNRSSFLPAIEGDSLAILSAYLL---  165 (571)
Q Consensus        89 ~~~~~~~~g~~~~H~FDGdGmlh~~~f~~g~~g~~~v~y~~R~V~T~~~~~e~~~g~~~~~~~~~~~~~~~~~~~~~---  165 (571)
                      .         +.+||||||||||+|+|++|     +|+|+||||||++|++|+++|+.+|+. + + ++.++++.+.   
T Consensus        95 ~---------~~~H~FDGDGMlha~~f~~G-----~a~y~~RfVrT~~~~~E~~ag~~~~~~-~-~-~~~g~~g~~~~~~  157 (545)
T PLN02491         95 V---------AGYHWFDGDGMIHGMRIKDG-----KATYVSRYVKTSRLKQEEFFGGAKFMK-I-G-DLKGLFGLLMVNM  157 (545)
T ss_pred             C---------CCCccccCCccEEEEEEcCC-----cEEEEeeeecccchhhhhhcCcccccc-c-c-cccccchhhhhhh
Confidence            2         46899999999999999987     799999999999999999999999864 1 1 2222222111   


Q ss_pred             hhhhc--CCc----cccccceeeEEECCEEEEEeeCCCceee---ecCCcceeeecccCCCCCCCCCCcceeeCCCCcEE
Q 008275          166 NLLRF--GKI----NKYISNTNIFEHAGKFYSVAENHMPQEI---DIFTLETLGNWDVNGAWNRPFTSHPKKASGTGELV  236 (571)
Q Consensus       166 ~~~r~--~~~----~~~~aNt~v~~~~g~LlAl~E~~~p~~i---Dp~TLeT~G~~d~~g~l~~~~tAHPk~Dp~tGel~  236 (571)
                      ..+|.  +..    .+|+|||||++|+||||||||+|.||++   ||.||||+|++||+|+|..+||||||+||+||||+
T Consensus       158 ~~~r~~~~~~~~~~~~~~ANT~vi~~~grLlAl~E~g~Py~l~~~Dp~tLeT~G~~df~g~l~~~~TAHPk~DP~TGel~  237 (545)
T PLN02491        158 QQLRAKLKVLDFSYGNGTGNTALIYHHGKLLALSEADKPYVVKVLEDGDLQTLGLLDYDKRLKHSFTAHPKVDPFTGEMF  237 (545)
T ss_pred             hhhhccccccccccCCCCCceeEEEECCEEEEEEcCCCCeEecCCCCCCcceeeecccCCccCcccccCccCcCCCCCEE
Confidence            11111  111    1589999999999999999999999996   66999999999999999889999999999999999


Q ss_pred             EEEecCCCCcEEEEEEcCCCCeeEeeEEEEcCccccccccccCCCeEEEeeCCeeecHhhhhcC-CCceeecCCCceEEE
Q 008275          237 IMGVDATKPFVEIGVISADGDKLVHKVDLKLSRCSLCHEIGITQRYNVFLDYPLSIDLTRLAFG-GPLIKYEHEGYAKIG  315 (571)
Q Consensus       237 ~f~~~~~~~~~~~~~~d~~G~~~~~~~~~~~~~~~~iHdfaiTeny~V~~~~p~~~~~~~~~~g-~~~~~~d~~~~tr~~  315 (571)
                      +|+|+..+++++|+++|++|++. +.++++++.++|||||+|||||+||+++|+.+++.+|+.| ..++.|++++++||+
T Consensus       238 ~fgy~~~~p~~~y~~~~~~G~~~-~~v~i~l~~~~~~HDFaiTeny~Vf~~~Pl~~~~~~~~~~~~~~~~~d~~~~~r~g  316 (545)
T PLN02491        238 TFGYSHEPPYITYRVISKDGAMH-DPVPITISEPIMMHDFAITENYAIFMDLPLYFRPKEMVKEKKFIYTFDATKKARFG  316 (545)
T ss_pred             EEEecCCCCcEEEEEECCCCcCc-ceeEeecCCCceeeeeEecCCEEEEEECCcccCHHHHhhCCCceeEECCCCCcEEE
Confidence            99999987999999999999865 5688999999999999999999999999999999999876 567899999999999


Q ss_pred             EeeCCCCC-CCeEEEEcCCceeeeeeeeeecCCeEEEEEeeecCCCCCCCCCCCcchhhhhhhcchhccccccCCCCCCC
Q 008275          316 IMPRYGDA-DSVKWFDVEPNCTFHIINCFEDGDEVIVWGCRALESIIPGPDLGLNKFEWFSKKFRHAELADESVDTSPDD  394 (571)
Q Consensus       316 vipR~~~~-~~v~~~~~~~~~~fH~~NA~Ee~~~ivvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  394 (571)
                      ||||+++. +.++||++|+||+||++|||||+|+||+|+|++++..+.....          .+. .          ..+
T Consensus       317 VipR~~~~~~~irw~e~~~~f~fH~~NA~Ee~~~Ivvd~~~~~~~~~~~~~~----------~~~-~----------~~~  375 (545)
T PLN02491        317 VLPRYAKDELMIRWFELPNCFIFHNANAWEEEDEVVLITCRLENPDLDMVNG----------KVK-E----------KLE  375 (545)
T ss_pred             EEECCCCCCCceEEEEcCCceEeecCCccccCCeEEEEEeccCCCccccccc----------ccc-c----------ccc
Confidence            99998643 5799999999999999999999999999999997643210000          000 0          001


Q ss_pred             CCCcceEEEEEEeCCCCCeeeeeecCCCccccCCCcCCCCCCCCccEEEEeeeccccccCCCCCCcceeeeeeccCC---
Q 008275          395 VPLFSRVYEWRLNMQNGDVKETNLSGTKVSMDFPMINGGYTGIKNKYGYTQIVDSIASSASGMPKYGGLAKLSFEEP---  471 (571)
Q Consensus       395 ~~~~~~L~r~~idl~~g~~~~~~L~~~~~~~EfP~In~~~~Gr~yry~Y~~~~~~~~~~~~~~~~~~~l~K~D~~~~---  471 (571)
                       ...++|+|||||+++|+++++.|+  +.++|||+||+++.||+|||+|+++.+.       .+++++|+|+|++++   
T Consensus       376 -~~~~~l~r~ridl~tg~~~~~~l~--~~~~EfP~In~~~~Grk~ry~Y~~~~~~-------~~~~~gl~K~D~~t~~~~  445 (545)
T PLN02491        376 -NFGNELYEMRFNMKTGAASQKKLS--ASAVDFPRVNESYTGRKQRYVYGTILDS-------IAKVTGIIKFDLHAEPET  445 (545)
T ss_pred             -ccCceEEEEEEECCCCceeeeccC--CcccccCccCHHHCCCcccEEEEeccCC-------ccCcCeEEEEEecccccC
Confidence             234789999999999999998886  5799999999999999999999986542       346899999999863   


Q ss_pred             -CCCccccceeeEEEEcCCCeecccceeecCCCC--CCCCCeEEEEEEEeCCCCeeEEEEEeCCCCCCCceEEEEcCCCC
Q 008275          472 -DNTESEELIKVEYHKFEENIFCTGGAFVPKGRG--VEEDDGWIITFLHNEDTNISQVYIIDTKKFTDEPVAKITLSHRV  548 (571)
Q Consensus       472 -~~~~~~~~~~~~~~~~~~~~~~~EPvFVPrp~~--~~EDDG~Ll~~V~d~~~~~S~l~VlDA~~~~~gpVArv~LP~~v  548 (571)
                       +.......+.++.||+|+++|+|||+||||+++  .+|||||||++|||+++++|+|+||||++|++|||||++||+||
T Consensus       446 g~~~~~~~~~~~~~~~~g~~~~~~EPvFVPr~~~~~~~EDDG~ll~~V~d~~~~~S~l~VlDAk~~~~~pVA~v~LP~rV  525 (545)
T PLN02491        446 GKKKLEVGGNVKGIFDLGPGRFGSEAIFVPREPGTTSEEDDGYLIFFVHDENTGKSSVNVIDAKTMSADPVAVVELPHRV  525 (545)
T ss_pred             CccccccccceeEEEEcCCCccccCCEEecCCCCCCcccCCcEEEEEEEcCCCCcceEEEEeCCCCCCCeeEEEECCCCC
Confidence             210000001245789999999999999999854  58999999999999999999999999999999999999999999


Q ss_pred             CCCcCcccccCc
Q 008275          549 PYGFHGAFMSIP  560 (571)
Q Consensus       549 P~GfHG~w~~~~  560 (571)
                      ||||||+|+++.
T Consensus       526 P~GfHG~fv~~~  537 (545)
T PLN02491        526 PYGFHAFFVTEE  537 (545)
T ss_pred             CCCccccCcCHH
Confidence            999999999974

>PLN02258 9-cis-epoxycarotenoid dioxygenase NCED Back     alignment and domain information
>COG3670 Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PF03055 RPE65: Retinal pigment epithelial membrane protein; InterPro: IPR004294 Carotenoids such as beta-carotene, lycopene, lutein and beta-cryptoxanthine are produced in plants and certain bacteria, algae and fungi, where they function as accessory photosynthetic pigments and as scavengers of oxygen radicals for photoprotection Back     alignment and domain information
>PLN02969 9-cis-epoxycarotenoid dioxygenase Back     alignment and domain information
>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query571
3npe_A529 Structure Of Vp14 In Complex With Oxygen Length = 5 8e-38
2biw_A490 Crystal Structure Of Apocarotenoid Cleavage Oxygena 4e-24
3fsn_A533 Crystal Structure Of Rpe65 At 2.14 Angstrom Resolut 5e-08
>pdb|3NPE|A Chain A, Structure Of Vp14 In Complex With Oxygen Length = 529 Back     alignment and structure 
Iteration: 1

 Score =  155 bits (391), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 142/533 (26%), Positives = 230/533 (43%), Gaps = 85/533 (15%)
Query: 48  NFAPVDALREAVLVTNIDGEIPEDFPEGVYIRNGPNPLFGGLKSTKSMFGSSNHIWVEGE 107
           NFAPV   R  V    + G IP  F +GVY RNG NP F  +         + H   +G+
Sbjct: 51  NFAPVGE-RPPVHELPVSGRIPP-FIDGVYARNGANPCFDPV---------AGHHLFDGD 99
Query: 108 GMLHALYFKKETDGSWNVVYMNRHVESETFKQEKQRNRSSFLPAI---EGDXXXXXXXXX 164
           GM+HAL  +     S    Y  R  E+   +QE+   R  F  AI    G          
Sbjct: 100 GMVHALRIRNGAAES----YACRFTETARLRQERAIGRPVFPKAIGELHGHSGIARLALF 155
Query: 165 XXXXRFGKINKY----ISNTNIFEHAGKFYSVAENHMPQEIDIFT---LETLGNWDVNGA 217
                 G ++      ++N  +    G+  +++E+ +P  + +     LET+G +D +G 
Sbjct: 156 YARAACGLVDPSAGTGVANAGLVYFNGRLLAMSEDDLPYHVRVADDGDLETVGRYDFDGQ 215
Query: 218 WNRPFTSHPKKASGTGELVIMGVDATK-PFVEIGVISADGDKLVHKVDLKLSRCSLCHEI 276
                 +HPK    TGEL  +  D  K P+++      DG K    V++ L + ++ H+ 
Sbjct: 216 LGCAMIAHPKLDPATGELHALSYDVIKRPYLKYFYFRPDGTK-SDDVEIPLEQPTMIHDF 274
Query: 277 GITQRYNVFLDYPLSIDLTRLAFGGPLIKYEHEGYAKIGIMPRY-GDADSVKWFDVEPNC 335
            IT+   V  D+ +   L  +  GG  +  +    ++ G++P++  DA  + W DV P+C
Sbjct: 275 AITENLVVVPDHQVVFKLQEMLRGGSPVVLDAAKTSRFGVLPKHAADASEMAWVDV-PDC 333
Query: 336 -TFHIINCFED---GDEVIVWGCRALESIIPGPDLGLNKFEWFSKKFRHAELADESVDTS 391
             FH+ N +ED   G+ V++  C     + P                     AD   + S
Sbjct: 334 FCFHLWNAWEDEATGEVVVIGSC-----MTP---------------------ADSIFNES 367
Query: 392 PDDVPLFSRVYEWRLNMQNGDVKETNL--SGTKVSMDFPMINGGYTGIKNKYGYTQIVDS 449
             D  L S + E RL+ + G      +     +V+++  M+N    G + +Y Y  +   
Sbjct: 368 --DERLESVLTEIRLDARTGRSTRRAVLPPSQQVNLEVGMVNRNLLGRETRYAYLAV--- 422
Query: 450 IASSASGMPKYGGLAKLSFEEPDNTESEELIKVEYHKFEENIFCTGGAFVPKGRGVE--- 506
               A   PK  G AK+      +  + EL K EY    E  F     FVP         
Sbjct: 423 ----AEPWPKVSGFAKV------DLSTGELTKFEYG---EGRFGGEPCFVPMDPAAAHPR 469
Query: 507 -EDDGWIITFLHNEDTNISQVYIIDTKKFTDEPVAKITLSHRVPYGFHGAFMS 558
            EDDG+++TF+H+E    S++ +++      E  A + L  RVP+GFHG F++
Sbjct: 470 GEDDGYVLTFVHDERAGTSELLVVNAADMRLE--ATVQLPSRVPFGFHGTFIT 520
>pdb|2BIW|A Chain A, Crystal Structure Of Apocarotenoid Cleavage Oxygenase From Synechocystis, Native Enzyme Length = 490 Back     alignment and structure
>pdb|3FSN|A Chain A, Crystal Structure Of Rpe65 At 2.14 Angstrom Resolution Length = 533 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query571
2biw_A490 Apocarotenoid-cleaving oxygenase; non-heme iron, c 1e-133
3npe_A529 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; 1e-117
3kvc_A533 Retinoid isomerohydrolase; 7-bladed beta-propeller 1e-104
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-07
>2biw_A Apocarotenoid-cleaving oxygenase; non-heme iron, carotenoid cleavage, retinal forma oxidoreductase, dioxygenase; HET: 3ON; 2.39A {Synechocystis SP} PDB: 2bix_A* Length = 490 Back     alignment and structure
 Score =  395 bits (1017), Expect = e-133
 Identities = 99/527 (18%), Positives = 198/527 (37%), Gaps = 70/527 (13%)

Query: 44  PSQRNFAPVDALREAVLVTNIDGEIPEDFPEGVYIRNGPNPLFGGLKSTKSMFGSSNHIW 103
              R +       +  +   ++G IP D  +G   RNGP  L  G               
Sbjct: 19  DWLRGYQSQPQEWDYWVED-VEGSIPPDL-QGTLYRNGPGLLEIG--------DRPLKHP 68

Query: 104 VEGEGMLHALYFKKETDGSWNVVYMNRHVESETFKQEKQRNRSSFLPAIEGDSLAILSAY 163
            +G+GM+ A  F     G   V + ++ V ++ + +E++  +  +               
Sbjct: 69  FDGDGMVTAFKFP----GDGRVHFQSKFVRTQGYVEEQKAGKMIYRGVFGSQPAGGWLKT 124

Query: 164 LLNLLRFGKINKYISNTNIFEHAGKFYSVAENHMPQEIDIFTLETLGNWDVNG--AWNRP 221
           +     F    K I+NTNI     +  ++ E   P  ++   L T+G  D+ G  A  +P
Sbjct: 125 I-----FDLRLKNIANTNITYWGDRLLALWEGGQPHRLEPSNLATIGLDDLGGILAEGQP 179

Query: 222 FTSHPKKASGT----GELVIMGVDA---TKPFVEIGVISADGDKLVHKVDLKLSRCSLCH 274
            ++HP+    +    G+   +           + +  +   G KL+ +        +  H
Sbjct: 180 LSAHPRIDPASTFDGGQPCYVTFSIKSSLSSTLTLLELDPQG-KLLRQKTETFPGFAFIH 238

Query: 275 EIGITQRYNVFLDYPLSIDLTRLAFG----GPLIKYEHEGYAKIGIMPRYGDADSVKWFD 330
           +  IT  Y +FL   ++++     FG    G  +++  +  A+I ++PR  D   +K   
Sbjct: 239 DFAITPHYAIFLQNNVTLNGLPYLFGLRGAGECVQFHPDKPAQIILVPR--DGGEIKRIP 296

Query: 331 VEPNCTFHIINCFEDGDEVIVWGCRALESIIPGPDLGLNKFEWFSKKFRHAELADESVDT 390
           V+    FH  N FE+  ++I+                   +    +     +    + D 
Sbjct: 297 VQAGFVFHHANAFEENGKIILDSIC---------------YNSLPQVDTDGDFRSTNFDN 341

Query: 391 SPDDVPLFSRVYEWRLNMQNGDVKETNLSGTKVSMDFPMINGGYTGIKNKYGYTQIVDSI 450
                    +++ + ++     V++  +       +FP+++    G   +Y Y       
Sbjct: 342 LDP-----GQLWRFTIDPAAATVEKQLMVS--RCCEFPVVHPQQVGRPYRYVYMGAAHH- 393

Query: 451 ASSASGMPKYGGLAKLSFEEPDNTESEELIKVEYHKFEENIFCTGGAFVPKGRGVEEDDG 510
              ++G      + K+  E                 F  + F     FVP+  GV EDDG
Sbjct: 394 ---STGNAPLQAILKVDLESG---------TETLRSFAPHGFAGEPIFVPRPGGVAEDDG 441

Query: 511 WIITFLHNEDTNISQVYIIDTKKFTDEPVAKITLSHRVPYGFHGAFM 557
           W++  ++  D + S++ I+D +  T   +A + L H +PY  HG++ 
Sbjct: 442 WLLCLIYKADLHRSELVILDAQDITAPAIATLKLKHHIPYPLHGSWA 488
>3npe_A 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; seven blade beta propeller, abscisic acid, non iron, oxidoreductase; 3.20A {Zea mays} Length = 529 Back     alignment and structure
>3kvc_A Retinoid isomerohydrolase; 7-bladed beta-propeller, monotopic membrane protein, sensory transduction, vision, isomerase, non-heme iron protein; 1.90A {Bos taurus} PDB: 3fsn_A Length = 533 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query571
3npe_A529 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; 100.0
2biw_A490 Apocarotenoid-cleaving oxygenase; non-heme iron, c 100.0
3kvc_A533 Retinoid isomerohydrolase; 7-bladed beta-propeller 100.0
>3npe_A 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; seven blade beta propeller, abscisic acid, non iron, oxidoreductase; 3.20A {Zea mays} Back     alignment and structure
Probab=100.00  E-value=1e-117  Score=976.08  Aligned_cols=481  Identities=27%  Similarity=0.485  Sum_probs=409.3

Q ss_pred             ccchhhHHHHHHHHHhhhhhcc---CCCCC-------CCCCCcccccccccceecceEeecCCCCCCCCeEEeeCCCCCC
Q 008275           17 KTIKNSFVKLLDVFVDQMFEFV---DQPLL-------PSQRNFAPVDALREAVLVTNIDGEIPEDFPEGVYIRNGPNPLF   86 (571)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~---~~p~~-------~~~~~fapv~e~~~~~~~~~V~G~IP~~l~~Gt~~RnGP~~~~   86 (571)
                      +.++.+++.+||++++.+.++.   .+|+.       .++|+|+|++||.++ ..++|+|+||++| +|+||||||||.+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~fapv~ee~~~-~~l~V~G~IP~~L-~Gt~~RNGpnP~f   87 (529)
T 3npe_A           10 NLFQRAAAAALDAFEEGFVANVLERPHGLPSTADPAVQIAGNFAPVGERPPV-HELPVSGRIPPFI-DGVYARNGANPCF   87 (529)
T ss_dssp             CSHHHHHHHHHHHHHHHTCCCCCCTTSCCCTTTCHHHHTSGGGSCCCCEEEE-ESCCEEECCCTTC-EEEEEECCBCCSS
T ss_pred             ChhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCccchhccCcccccccCCc-ccceEeecCCccC-CceEEEecCCcCc
Confidence            4578899999999999998862   23433       348999999999855 4689999999976 9999999999865


Q ss_pred             CCCccccccCCccccccccCCCcEEEEEeecCCCCceeE-EEEeeeecchhHHHHHhcCCCccCCcccCChhh-hHHHHH
Q 008275           87 GGLKSTKSMFGSSNHIWVEGEGMLHALYFKKETDGSWNV-VYMNRHVESETFKQEKQRNRSSFLPAIEGDSLA-ILSAYL  164 (571)
Q Consensus        87 ~~~~~~~~~~g~~~~H~FDGdGmlh~~~f~~g~~g~~~v-~y~~R~V~T~~~~~e~~~g~~~~~~~~~~~~~~-~~~~~~  164 (571)
                      .+.         ..+||||||||||+|+|++|     +| +|+||||||++|++|+++|+++|+..+..-++. .+....
T Consensus        88 ~~~---------~~~HwFDGdGmlh~~~f~~G-----~a~~y~nRfVrT~~~~~e~~agr~~~~~~~~~~~~~~~~~r~~  153 (529)
T 3npe_A           88 DPV---------AGHHLFDGDGMVHALRIRNG-----AAESYACRFTETARLRQERAIGRPVFPKAIGELHGHSGIARLA  153 (529)
T ss_dssp             CCS---------SCCCGGGSCBEEEEEEEETT-----EEEEEEEEECCCHHHHHHHHHTSCCSCCTTTTTTSSTHHHHHH
T ss_pred             CCc---------CCCccCCCCceEEEEEECCC-----ccceEEEeEecCHHHHHHHHcCCcccccccccccccchhhhhh
Confidence            432         45899999999999999987     89 999999999999999999999997543322211 222222


Q ss_pred             Hhhhh--cCC----ccccccceeeEEECCEEEEEeeCCCceee--ecC-CcceeeecccCCCCCCCCCCcceeeCCCCcE
Q 008275          165 LNLLR--FGK----INKYISNTNIFEHAGKFYSVAENHMPQEI--DIF-TLETLGNWDVNGAWNRPFTSHPKKASGTGEL  235 (571)
Q Consensus       165 ~~~~r--~~~----~~~~~aNt~v~~~~g~LlAl~E~~~p~~i--Dp~-TLeT~G~~d~~g~l~~~~tAHPk~Dp~tGel  235 (571)
                      ....+  ++.    ..+|+|||||++|+||||||||+|.||++  ||+ ||||+|.+||+|+|..+||||||+||+||||
T Consensus       154 ~~~~~~~~~~~~~~~~~~~ANtnvv~~~g~llAl~E~g~Py~~~idp~~tLeT~G~~d~~g~l~~~~tAHPk~Dp~TGel  233 (529)
T 3npe_A          154 LFYARAACGLVDPSAGTGVANAGLVYFNGRLLAMSEDDLPYHVRVADDGDLETVGRYDFDGQLGCAMIAHPKLDPATGEL  233 (529)
T ss_dssp             HHHHHHHTTSCCGGGCCCCCCSCEEEETTEEEECCTTSCCEEEEECTTSCEEEEEECCGGGCCCSCCCSCCEECTTTCCE
T ss_pred             hhhhhcccccccccccCCCCeEEEEEECCEEEEEEcCCCceEEecCCCCCcceeeeeccCCccCCcccccCcCCCCCCcE
Confidence            11111  221    12589999999999999999999999988  885 9999999999999998999999999999999


Q ss_pred             EEEEecCC-CCcEEEEEEcCCCCeeEeeEEEEcCccccccccccCCCeEEEeeCCeeecHhhhhcCCCceeecCCCceEE
Q 008275          236 VIMGVDAT-KPFVEIGVISADGDKLVHKVDLKLSRCSLCHEIGITQRYNVFLDYPLSIDLTRLAFGGPLIKYEHEGYAKI  314 (571)
Q Consensus       236 ~~f~~~~~-~~~~~~~~~d~~G~~~~~~~~~~~~~~~~iHdfaiTeny~V~~~~p~~~~~~~~~~g~~~~~~d~~~~tr~  314 (571)
                      ++|+|+.. +|+++|++++++|++. +.++|+++.++|||||+|||||+||+++|+++|+.+|+.|+.++.|+|++++||
T Consensus       234 ~~f~y~~~~~p~~~~~~~~~~G~~~-~~~~i~~~~p~~~HDFaiTenyvVf~~~Pl~~~~~~~~~g~~~~~~~p~~~tr~  312 (529)
T 3npe_A          234 HALSYDVIKRPYLKYFYFRPDGTKS-DDVEIPLEQPTMIHDFAITENLVVVPDHQVVFKLQEMLRGGSPVVLDAAKTSRF  312 (529)
T ss_dssp             EEEECCSSSSCCCEEEEECTTCCBC-CCEECCCSSCBCCCCCEECSSEEEEEECSEEECGGGGTTTCCSEEECTTSCCEE
T ss_pred             EEEEeecCCCCcEEEEEECCCCCEE-EEEEEeCCCCceEeeEEecCCeEEEEeCCeEEcHHHHhCCCCceEECCCCCcEE
Confidence            99999985 5899999999999865 567888999999999999999999999999999999999999999999999999


Q ss_pred             EEeeCCCCC-CCeEEEEcCCceeeeeeeeeecC--CeEEEEEeeecCCCCCCCCCCCcchhhhhhhcchhccccccCCCC
Q 008275          315 GIMPRYGDA-DSVKWFDVEPNCTFHIINCFEDG--DEVIVWGCRALESIIPGPDLGLNKFEWFSKKFRHAELADESVDTS  391 (571)
Q Consensus       315 ~vipR~~~~-~~v~~~~~~~~~~fH~~NA~Ee~--~~ivvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  391 (571)
                      +||||+++. +.++||++|+||+||++|||||+  |+||+|.|++.+....               +.      +    .
T Consensus       313 ~VipR~~~~~~~vrw~e~~~~f~fH~~NA~Ee~~~~~ivv~~~~~~~~~~~---------------~~------~----~  367 (529)
T 3npe_A          313 GVLPKHAADASEMAWVDVPDCFCFHLWNAWEDEATGEVVVIGSCMTPADSI---------------FN------E----S  367 (529)
T ss_dssp             EEEETTCSSGGGCEEEECTTCEEEEEEEEEEETTTTEEEEEEEEECCCCCS---------------CC------S----S
T ss_pred             EEEECCCCCCCceEEEEcCCEEEEEecccEecCCCCeEEEEEecccCchhh---------------hh------c----c
Confidence            999999643 47999999999999999999974  6899988887542110               00      0    0


Q ss_pred             CCCCCCcceEEEEEEeCCCCCeeeeeecC--CCccccCCCcCCCCCCCCccEEEEeeeccccccCCCCCCcceeeeeecc
Q 008275          392 PDDVPLFSRVYEWRLNMQNGDVKETNLSG--TKVSMDFPMINGGYTGIKNKYGYTQIVDSIASSASGMPKYGGLAKLSFE  469 (571)
Q Consensus       392 ~~~~~~~~~L~r~~idl~~g~~~~~~L~~--~~~~~EfP~In~~~~Gr~yry~Y~~~~~~~~~~~~~~~~~~~l~K~D~~  469 (571)
                       .+ ...++|+||+||+++|+++++.|.+  .+.++|||+||++|.||+|||+|+++.++       .+.+++|+|+|++
T Consensus       368 -~~-~~~~~l~r~rl~l~~g~~~~~~l~~~~~~~~~EfP~In~~~~Gr~~Ry~Y~~~~~~-------~~~~~~l~K~D~~  438 (529)
T 3npe_A          368 -DE-RLESVLTEIRLDARTGRSTRRAVLPPSQQVNLEVGMVNRNLLGRETRYAYLAVAEP-------WPKVSGFAKVDLS  438 (529)
T ss_dssp             -SS-CCCCEEEEEEECTTTCCEEEEESSCSSSCCCEEEEEECGGGTTSCCSEEEEEECCS-------TTSCCEEEEEETT
T ss_pred             -ch-hhccceEEEEEcCCCCCEEeEEecccccCccccCceEChhHcCCccceEEEeccCC-------CCCcceEEEEecC
Confidence             01 3457899999999999998887762  13689999999999999999999987542       3467999999999


Q ss_pred             CCCCCccccceeeEEEEcCCCeecccceeecCCC----CCCCCCeEEEEEEEeCCCCeeEEEEEeCCCCCCCceEEEEcC
Q 008275          470 EPDNTESEELIKVEYHKFEENIFCTGGAFVPKGR----GVEEDDGWIITFLHNEDTNISQVYIIDTKKFTDEPVAKITLS  545 (571)
Q Consensus       470 ~~~~~~~~~~~~~~~~~~~~~~~~~EPvFVPrp~----~~~EDDG~Ll~~V~d~~~~~S~l~VlDA~~~~~gpVArv~LP  545 (571)
                      +++         ++.||+++++|+|||||||||+    +++|||||||++|+|..+++|+|+||||++|++  |||++||
T Consensus       439 tg~---------~~~~~~g~~~~~~EPvFVPrp~~~~~~~~EDDG~lLs~V~d~~~~~S~LlILDA~~l~~--vArv~LP  507 (529)
T 3npe_A          439 TGE---------LTKFEYGEGRFGGEPCFVPMDPAAAHPRGEDDGYVLTFVHDERAGTSELLVVNAADMRL--EATVQLP  507 (529)
T ss_dssp             TCC---------EEEEECCTTBCCCCCEEEECCSCSSSSCCTTCEEEEEEEEBSSCCCEEEEEEETTTTEE--EEEEEES
T ss_pred             CCc---------eEEEEcCCCccccCCEeeeCCCCCCCCCCCCCcEEEEEEEECCCCcEEEEEEeCCCCcc--ceEEECC
Confidence            986         3579999999999999999999    889999999999999999999999999999986  9999999


Q ss_pred             CCCCCCcCcccccC
Q 008275          546 HRVPYGFHGAFMSI  559 (571)
Q Consensus       546 ~~vP~GfHG~w~~~  559 (571)
                      ++||+||||+|+++
T Consensus       508 ~rvP~GfHG~wv~~  521 (529)
T 3npe_A          508 SRVPFGFHGTFITG  521 (529)
T ss_dssp             SCCCCCSCEEEEEH
T ss_pred             CCCCCCccccccCH
Confidence            99999999999996
>2biw_A Apocarotenoid-cleaving oxygenase; non-heme iron, carotenoid cleavage, retinal forma oxidoreductase, dioxygenase; HET: 3ON; 2.39A {Synechocystis SP} PDB: 2bix_A* Back     alignment and structure
>3kvc_A Retinoid isomerohydrolase; 7-bladed beta-propeller, monotopic membrane protein, sensory transduction, vision, isomerase, non-heme iron protein; 1.90A {Bos taurus} PDB: 3fsn_A 4f2z_A 4f30_A 4f3a_A 4f3d_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00