Citrus Sinensis ID: 008290

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-
MAVNQFIGGRSCGITGTSFQRRAINKMGKAFPIYSMVIAPPNCSFGVINRAKNGFNPAIMCCGSVSDQHASDYITINPSGVGERLASDGGELSNESRKSAATSQSCVQNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSKDSTSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAPAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKRTILSIPNMKNLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVSMLADAQAASGQALIASSFAKGDYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLFVSASQPVTAVAYIFDGLHYGVSDFSYAAYSMMAVGAISSVFLLYAPRVFGLSAVWWGLTLFMSLRVAAGYFRLLSKNGPWWFLQKHMPKLEIAN
cccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccEEcccccccccccc
cccEEEcccccccccccHHHHHHHHHHcccccEEEEEEcccccccccccccccccccHHHccccccccccEEEEEEccccccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcHHHHHHHHHHHcHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHccccccHHccc
mavnqfiggrscgitgtSFQRRAINKMGkafpiysmviappncsfgvinrakngfnpaimccgsvsdqhasdyitinpsgvgerlasdggelsnesrksaatsQSCVQNVQLDLIMLslpaiagqaIEPMAQLMETAYigrlgplelasagVSTSIFNILSKVFNIPLLSVATSFvaedisrssskdstsdsscpnvsyngcdestdrkllpsVSTALVLALTIGILEALAMYFGSGLFLDIMGissassmripaQRFLSLRAIGAPAVVLSLAIQGIfrgfkdtrtpvfclglgnfsavFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKRtilsipnmknlhfgdylrsggyLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVSMLADAQAASGQALIASSfakgdyntVKEITHFALKTGLFTGVTLAVILGASFNYLATlftsdtqvLGIVRSGLLfvsasqpvtAVAYIFDglhygvsdfsYAAYSMMAVGAISSVFLLYAPRVFGLSAVWWGLTLFMSLRVAAGYFRLlskngpwwflqkhmpkleian
mavnqfiggrscgitgtSFQRRAINKMGKAFPIYSMVIAPPNCSFGVINRAKNGFNPAIMCCGSVSDQHASDYITINPSGVGERLASDGGELSNESRKSAATSQSCVQNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDIsrssskdstsdsscpnVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAPAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKRTILSIPNMKNLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVSMLADAQAASGQALIASSFAKGDYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLFVSASQPVTAVAYIFDGLHYGVSDFSYAAYSMMAVGAISSVFLLYAPRVFGLSAVWWGLTLFMSLRVAAGYFRLLSKNGPWWFLQKHMPKLEIAN
MAVNQFIGGRSCGITGTSFQRRAINKMGKAFPIYSMVIAPPNCSFGVINRAKNGFNPAIMCCGSVSDQHASDYITINPSGVGERLASDGGELSNESRKSAATSQSCVQNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEdisrssskdstsdssCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAPAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKRTILSIPNMKNLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVSMLADAQAASGQALIASSFAKGDYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLFVSASQPVTAVAYIFDGLHYGVSDFSYAAYSMMAVGAISSVFLLYAPRVFGLSAVWWGLTLFMSLRVAAGYFRLLSKNGPWWFLQKHMPKLEIAN
*****FIGGRSCGITGTSFQRRAINKMGKAFPIYSMVIAPPNCSFGVINRAKNGFNPAIMCCGSVSDQHASDYITIN****************************CVQNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVA********************************LLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAPAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKRTILSIPNMKNLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVSMLADAQAASGQALIASSFAKGDYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLFVSASQPVTAVAYIFDGLHYGVSDFSYAAYSMMAVGAISSVFLLYAPRVFGLSAVWWGLTLFMSLRVAAGYFRLLSKNGPWWFLQKH********
*******GGRSCGITGTSFQRRA*****************************************************************************************DLIMLSLPAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDI****************VSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAPAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKRTILSIPNMKNLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVSMLADAQAASGQALIASSFAKGDYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLFVSASQPVTAVAYIFDGLHYGVSDFSYAAYSMMAVGAISSVFLLYAPRVFGLSAVWWGLTLFMSLRVAAGYFRLLSKNGPWWFLQKHMP******
MAVNQFIGGRSCGITGTSFQRRAINKMGKAFPIYSMVIAPPNCSFGVINRAKNGFNPAIMCCGSVSDQHASDYITINPSGVGE**********************CVQNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAE******************VSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAPAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKRTILSIPNMKNLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVSMLADAQAASGQALIASSFAKGDYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLFVSASQPVTAVAYIFDGLHYGVSDFSYAAYSMMAVGAISSVFLLYAPRVFGLSAVWWGLTLFMSLRVAAGYFRLLSKNGPWWFLQKHMPKLEIAN
*AVNQFIGGRSCGITGTSFQRRAINKMGKAFPIYSMVIAPPNCSFGVINRAKNGFNPAIMCCGSVSDQHASDYITINPSGVG*******************TSQSCVQNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSKDSTSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAPAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKRTILSIPNMKNLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVSMLADAQAASGQALIASSFAKGDYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLFVSASQPVTAVAYIFDGLHYGVSDFSYAAYSMMAVGAISSVFLLYAPRVFGLSAVWWGLTLFMSLRVAAGYFRLLSKNGPWWFLQKHM*******
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MAVNQFIGGRSCGITGTSFQRRAINKMGKAFPIYSMVIAPPNCSFGVINRAKNGFNPAIMCCGSVSDQHASDYITINPSGVGERLASDGGELSNESRKSAATSQSCVQNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSKDSTSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAPAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKRTILSIPNMKNLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVSMLADAQAASGQALIASSFAKGDYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLFVSASQPVTAVAYIFDGLHYGVSDFSYAAYSMMAVGAISSVFLLYAPRVFGLSAVWWGLTLFMSLRVAAGYFRLLSKNGPWWFLQKHMPKLEIAN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query571 2.2.26 [Sep-21-2011]
Q9SVE7560 MATE efflux family protei yes no 0.887 0.905 0.569 1e-165
Q84K71521 MATE efflux family protei no no 0.749 0.821 0.467 1e-113
Q9SYD6515 MATE efflux family protei no no 0.760 0.842 0.406 1e-99
Q9SFB0526 MATE efflux family protei no no 0.751 0.815 0.388 3e-93
Q8W4G3559 MATE efflux family protei no no 0.723 0.738 0.248 9e-17
P28303459 DNA-damage-inducible prot N/A no 0.553 0.688 0.255 8e-09
Q945F0543 Enhanced disease suscepti no no 0.735 0.773 0.214 2e-07
Q58119450 Uncharacterized transport yes no 0.572 0.726 0.213 2e-05
Q9WZS2464 Probable multidrug resist no no 0.595 0.732 0.204 3e-05
>sp|Q9SVE7|MATE3_ARATH MATE efflux family protein 3, chloroplastic OS=Arabidopsis thaliana GN=DTX45 PE=2 SV=2 Back     alignment and function desciption
 Score =  582 bits (1499), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 300/527 (56%), Positives = 388/527 (73%), Gaps = 20/527 (3%)

Query: 41  PNCSFGVINRAKNGFNPAIMCCGSVSDQHASDYITINPSGVGERLASDGGELSNESRKSA 100
           PN  F  + R K+  NP    CG V      D  +       ++L    G  +  +R   
Sbjct: 53  PNPMFPFVTRRKSQTNPD---CGVVKLGEEDDSCSSL-----DKLPEVNGVHTGVARPV- 103

Query: 101 ATSQSCVQNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNIL 160
                   +++ +L+MLSLPAIAGQAI+P+  LMETAYIGRLG +EL SAGVS +IFN +
Sbjct: 104 --------DIKRELVMLSLPAIAGQAIDPLTLLMETAYIGRLGSVELGSAGVSMAIFNTI 155

Query: 161 SKVFNIPLLSVATSFVAEDISRSSSKDSTSDSSCPNVSYNGCDESTDRKLLPSVSTALVL 220
           SK+FNIPLLSVATSFVAEDI++ +++D  S+ S  ++   G  E   RK L SVSTALVL
Sbjct: 156 SKLFNIPLLSVATSFVAEDIAKIAAQDLASEDSQSDIPSQGLPE---RKQLSSVSTALVL 212

Query: 221 ALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAPAVVLSLAIQGIFR 280
           A+ IGI EALA+   SG FL +MGI S S M IPA++FL LRA+GAPA V+SLA+QGIFR
Sbjct: 213 AIGIGIFEALALSLASGPFLRLMGIQSMSEMFIPARQFLVLRALGAPAYVVSLALQGIFR 272

Query: 281 GFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKRT 340
           GFKDT+TPV+CLG+GNF AVF+FP+ +Y F++GV GAAIS+V SQY V +LM+  LNKR 
Sbjct: 273 GFKDTKTPVYCLGIGNFLAVFLFPLFIYKFRMGVAGAAISSVISQYTVAILMLILLNKRV 332

Query: 341 ILSIPNMKNLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLS 400
           IL  P + +L FGDYL+SGG++LGRTL+ ++T+T++TS+AARQG  AMAAHQIC+QVWL+
Sbjct: 333 ILLPPKIGSLKFGDYLKSGGFVLGRTLSVLVTMTVATSMAARQGVFAMAAHQICMQVWLA 392

Query: 401 VSMLADAQAASGQALIASSFAKGDYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATL 460
           VS+L DA A+SGQALIASS +K D+  VKE+T F LK G+ TG+ LA++LG SF+ +A L
Sbjct: 393 VSLLTDALASSGQALIASSASKRDFEGVKEVTTFVLKIGVVTGIALAIVLGMSFSSIAGL 452

Query: 461 FTSDTQVLGIVRSGLLFVSASQPVTAVAYIFDGLHYGVSDFSYAAYSMMAVGAISSVFLL 520
           F+ D +VL IVR G+LFV+A+QP+TA+A+IFDGLHYG+SDF YAA SMM VG ISS F+L
Sbjct: 453 FSKDPEVLRIVRKGVLFVAATQPITALAFIFDGLHYGMSDFPYAACSMMVVGGISSAFML 512

Query: 521 YAPRVFGLSAVWWGLTLFMSLRVAAGYFRLLSKNGPWWFLQKHMPKL 567
           YAP   GLS VW GL++FM LR+ AG+ RL+ + GPWWF+     +L
Sbjct: 513 YAPAGLGLSGVWVGLSMFMGLRMVAGFSRLMWRKGPWWFMHTSDKRL 559

Arabidopsis thaliana (taxid: 3702)
>sp|Q84K71|MATE2_ARATH MATE efflux family protein 2, chloroplastic OS=Arabidopsis thaliana GN=DTX44 PE=2 SV=1 Back     alignment and function description
>sp|Q9SYD6|MATE1_ARATH MATE efflux family protein 1 OS=Arabidopsis thaliana GN=MATE PE=2 SV=2 Back     alignment and function description
>sp|Q9SFB0|FRD3_ARATH MATE efflux family protein FRD3 OS=Arabidopsis thaliana GN=FRD3 PE=1 SV=1 Back     alignment and function description
>sp|Q8W4G3|MATE4_ARATH MATE efflux family protein 4, chloroplastic OS=Arabidopsis thaliana GN=DTX46 PE=2 SV=1 Back     alignment and function description
>sp|P28303|DINF_ECOLI DNA-damage-inducible protein F OS=Escherichia coli (strain K12) GN=dinF PE=2 SV=1 Back     alignment and function description
>sp|Q945F0|EDS5_ARATH Enhanced disease susceptibility 5 OS=Arabidopsis thaliana GN=EDS5 PE=2 SV=1 Back     alignment and function description
>sp|Q58119|Y709_METJA Uncharacterized transporter MJ0709 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0709 PE=3 SV=1 Back     alignment and function description
>sp|Q9WZS2|NORM_THEMA Probable multidrug resistance protein NorM OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=norM PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query571
255561365447 DNA-damage-inducible protein f, putative 0.774 0.988 0.766 0.0
224084133484 predicted protein [Populus trichocarpa] 0.782 0.923 0.735 0.0
297744535604 unnamed protein product [Vitis vinifera] 0.901 0.852 0.620 0.0
359474812601 PREDICTED: MATE efflux family protein 3, 0.893 0.848 0.612 1e-177
357495629586 Transporter, putative [Medicago truncatu 0.842 0.820 0.634 1e-177
224078541442 predicted protein [Populus trichocarpa] 0.772 0.997 0.697 1e-175
357495631615 Transporter, putative [Medicago truncatu 0.842 0.782 0.600 1e-172
224105071430 predicted protein [Populus trichocarpa] 0.751 0.997 0.691 1e-167
449454410603 PREDICTED: MATE efflux family protein 3, 0.877 0.830 0.616 1e-167
356499517587 PREDICTED: MATE efflux family protein 3, 0.767 0.746 0.654 1e-166
>gi|255561365|ref|XP_002521693.1| DNA-damage-inducible protein f, putative [Ricinus communis] gi|223539084|gb|EEF40680.1| DNA-damage-inducible protein f, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  690 bits (1780), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/449 (76%), Positives = 397/449 (88%), Gaps = 7/449 (1%)

Query: 112 LDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSV 171
           ++LIMLS+PAIAGQAIEP+AQLMETAY+GRLGPLELASAGVS SIFNI+SKVFNIPLLSV
Sbjct: 1   MELIMLSIPAIAGQAIEPLAQLMETAYVGRLGPLELASAGVSMSIFNIISKVFNIPLLSV 60

Query: 172 ATSFVAEDISRSSSKDSTSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALA 231
           ATSFVAEDISR+++ DS SD    N      +  ++RKLLPSVSTAL+LA  IG+ EALA
Sbjct: 61  ATSFVAEDISRNAN-DSGSDGGDSN------NIISERKLLPSVSTALLLATGIGLFEALA 113

Query: 232 MYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAPAVVLSLAIQGIFRGFKDTRTPVFC 291
           MY GSG+FL++MGISSAS MR+PA++FL +RAIGAPAVVL LAIQGIFRGFKDT+TPV C
Sbjct: 114 MYLGSGVFLNMMGISSASPMRVPAEKFLKIRAIGAPAVVLYLAIQGIFRGFKDTKTPVLC 173

Query: 292 LGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKRTILSIPNMKNLH 351
           LGLGN SAVF+FP+LM+YF+LGVTGAAISTV SQY+V+ LMIWYLNKRT+LS+P+++ L 
Sbjct: 174 LGLGNLSAVFLFPILMHYFRLGVTGAAISTVASQYIVSFLMIWYLNKRTVLSLPSVEGLD 233

Query: 352 FGDYLRSGGYLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVSMLADAQAAS 411
           FG YLRSGG+LLGRTLAAVMTITLSTS+AARQGALAMAAHQICLQVWLSVS+L DAQAAS
Sbjct: 234 FGGYLRSGGFLLGRTLAAVMTITLSTSMAARQGALAMAAHQICLQVWLSVSLLVDAQAAS 293

Query: 412 GQALIASSFAKGDYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIV 471
            QALIASS AKGDY+ VKEIT  +LK GLFTG++LA+ILG SF+ LATLFT D +VL IV
Sbjct: 294 SQALIASSSAKGDYSRVKEITFCSLKLGLFTGISLAIILGVSFSSLATLFTKDAEVLAIV 353

Query: 472 RSGLLFVSASQPVTAVAYIFDGLHYGVSDFSYAAYSMMAVGAISSVFLLYAPRVFGLSAV 531
           R+G+LFV+ASQP+ A+AYIFDGLHYG+SDFSYAA+SMMAVGA+SSVF+LY P V GLS V
Sbjct: 354 RTGVLFVTASQPINAIAYIFDGLHYGISDFSYAAWSMMAVGALSSVFMLYLPSVVGLSGV 413

Query: 532 WWGLTLFMSLRVAAGYFRLLSKNGPWWFL 560
           W GLTLFM LR  AGY RL+SK GPWWFL
Sbjct: 414 WSGLTLFMGLRTVAGYMRLVSKKGPWWFL 442

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224084133|ref|XP_002307222.1| predicted protein [Populus trichocarpa] gi|222856671|gb|EEE94218.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297744535|emb|CBI37797.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359474812|ref|XP_002278724.2| PREDICTED: MATE efflux family protein 3, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|357495629|ref|XP_003618103.1| Transporter, putative [Medicago truncatula] gi|355519438|gb|AET01062.1| Transporter, putative [Medicago truncatula] Back     alignment and taxonomy information
>gi|224078541|ref|XP_002305555.1| predicted protein [Populus trichocarpa] gi|222848519|gb|EEE86066.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357495631|ref|XP_003618104.1| Transporter, putative [Medicago truncatula] gi|355519439|gb|AET01063.1| Transporter, putative [Medicago truncatula] Back     alignment and taxonomy information
>gi|224105071|ref|XP_002313675.1| predicted protein [Populus trichocarpa] gi|222850083|gb|EEE87630.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449454410|ref|XP_004144948.1| PREDICTED: MATE efflux family protein 3, chloroplastic-like [Cucumis sativus] gi|449473238|ref|XP_004153826.1| PREDICTED: MATE efflux family protein 3, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356499517|ref|XP_003518586.1| PREDICTED: MATE efflux family protein 3, chloroplastic-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query571
TAIR|locus:2121783560 AT4G38380 [Arabidopsis thalian 0.786 0.801 0.619 1.1e-144
TAIR|locus:2057135521 AT2G38330 "AT2G38330" [Arabido 0.772 0.846 0.458 1.5e-106
TAIR|locus:2008236515 AT1G51340 [Arabidopsis thalian 0.619 0.687 0.435 6.9e-96
TAIR|locus:2077477526 FRD3 "FERRIC REDUCTASE DEFECTI 0.642 0.697 0.409 2.1e-92
TAIR|locus:2050140559 AT2G21340 [Arabidopsis thalian 0.584 0.597 0.245 2.4e-20
UNIPROTKB|P28303459 dinF "DinF MATE Transporter" [ 0.590 0.734 0.262 6.1e-19
TAIR|locus:2120267543 EDS5 "AT4G39030" [Arabidopsis 0.581 0.611 0.218 5.4e-12
UNIPROTKB|P76352495 yeeO "YeeO MATE transporter" [ 0.598 0.690 0.219 1.5e-11
TIGR_CMR|CPS_2888462 CPS_2888 "MATE efflux family p 0.702 0.867 0.216 5.9e-11
UNIPROTKB|Q5LPD9441 dinF "DNA-damage-inducible pro 0.569 0.736 0.240 2.2e-09
TAIR|locus:2121783 AT4G38380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1414 (502.8 bits), Expect = 1.1e-144, P = 1.1e-144
 Identities = 280/452 (61%), Positives = 354/452 (78%)

Query:   109 NVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPL 168
             +++ +L+MLSLPAIAGQAI+P+  LMETAYIGRLG +EL SAGVS +IFN +SK+FNIPL
Sbjct:   104 DIKRELVMLSLPAIAGQAIDPLTLLMETAYIGRLGSVELGSAGVSMAIFNTISKLFNIPL 163

Query:   169 LSVATSFVAEXXXXXXXXXXXXXXXCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILE 228
             LSVATSFVAE                 ++   G  E   RK L SVSTALVLA+ IGI E
Sbjct:   164 LSVATSFVAEDIAKIAAQDLASEDSQSDIPSQGLPE---RKQLSSVSTALVLAIGIGIFE 220

Query:   229 ALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAPAVVLSLAIQGIFRGFKDTRTP 288
             ALA+   SG FL +MGI S S M IPA++FL LRA+GAPA V+SLA+QGIFRGFKDT+TP
Sbjct:   221 ALALSLASGPFLRLMGIQSMSEMFIPARQFLVLRALGAPAYVVSLALQGIFRGFKDTKTP 280

Query:   289 VFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKRTILSIPNMK 348
             V+CLG+GNF AVF+FP+ +Y F++GV GAAIS+V SQY V +LM+  LNKR IL  P + 
Sbjct:   281 VYCLGIGNFLAVFLFPLFIYKFRMGVAGAAISSVISQYTVAILMLILLNKRVILLPPKIG 340

Query:   349 NLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVSMLADAQ 408
             +L FGDYL+SGG++LGRTL+ ++T+T++TS+AARQG  AMAAHQIC+QVWL+VS+L DA 
Sbjct:   341 SLKFGDYLKSGGFVLGRTLSVLVTMTVATSMAARQGVFAMAAHQICMQVWLAVSLLTDAL 400

Query:   409 AASGQALIASSFAKGDYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVL 468
             A+SGQALIASS +K D+  VKE+T F LK G+ TG+ LA++LG SF+ +A LF+ D +VL
Sbjct:   401 ASSGQALIASSASKRDFEGVKEVTTFVLKIGVVTGIALAIVLGMSFSSIAGLFSKDPEVL 460

Query:   469 GIVRSGLLFVSASQPVTAVAYIFDGLHYGVSDFSYAAYSMMAVGAISSVFLLYAPRVFGL 528
              IVR G+LFV+A+QP+TA+A+IFDGLHYG+SDF YAA SMM VG ISS F+LYAP   GL
Sbjct:   461 RIVRKGVLFVAATQPITALAFIFDGLHYGMSDFPYAACSMMVVGGISSAFMLYAPAGLGL 520

Query:   529 SAVWWGLTLFMSLRVAAGYFRLLSKNGPWWFL 560
             S VW GL++FM LR+ AG+ RL+ + GPWWF+
Sbjct:   521 SGVWVGLSMFMGLRMVAGFSRLMWRKGPWWFM 552
GO:0005886 "plasma membrane" evidence=ISM
GO:0006855 "drug transmembrane transport" evidence=IEA
GO:0015238 "drug transmembrane transporter activity" evidence=IEA
GO:0015297 "antiporter activity" evidence=IEA
GO:0016020 "membrane" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
GO:0009507 "chloroplast" evidence=IDA
TAIR|locus:2057135 AT2G38330 "AT2G38330" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008236 AT1G51340 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077477 FRD3 "FERRIC REDUCTASE DEFECTIVE 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050140 AT2G21340 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P28303 dinF "DinF MATE Transporter" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TAIR|locus:2120267 EDS5 "AT4G39030" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P76352 yeeO "YeeO MATE transporter" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_2888 CPS_2888 "MATE efflux family protein" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
UNIPROTKB|Q5LPD9 dinF "DNA-damage-inducible protein F" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SVE7MATE3_ARATHNo assigned EC number0.56920.88790.9053yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query571
cd13136424 cd13136, MATE_DinF_like, DinF and similar proteins 2e-95
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 2e-48
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 4e-44
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 7e-36
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 6e-29
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 2e-28
cd13140435 cd13140, MATE_like_1, Uncharacterized subfamily of 2e-24
cd13134438 cd13134, MATE_like_8, Uncharacterized subfamily of 1e-22
cd13143426 cd13143, MATE_MepA_like, Subfamily of the multidru 2e-21
cd13133438 cd13133, MATE_like_7, Uncharacterized subfamily of 2e-18
cd13149434 cd13149, MATE_like_2, Uncharacterized subfamily of 5e-17
cd13131435 cd13131, MATE_NorM_like, Subfamily of the multidru 2e-15
cd13147441 cd13147, MATE_MJ0709_like, Uncharacterized subfami 9e-15
PRK10367441 PRK10367, PRK10367, DNA-damage-inducible SOS respo 4e-14
cd13132436 cd13132, MATE_eukaryotic, Eukaryotic members of th 7e-12
cd13142444 cd13142, MATE_like_12, Uncharacterized subfamily o 7e-12
cd13145440 cd13145, MATE_like_5, Uncharacterized subfamily of 3e-11
cd13139448 cd13139, MATE_like_14, Uncharacterized subfamily o 2e-09
cd13144434 cd13144, MATE_like_4, Uncharacterized subfamily of 2e-09
pfam01554161 pfam01554, MatE, MatE 9e-09
cd13148441 cd13148, MATE_like_3, Uncharacterized subfamily of 4e-07
pfam01554161 pfam01554, MatE, MatE 8e-07
PRK10189478 PRK10189, PRK10189, MATE family multidrug exporter 5e-06
cd13135429 cd13135, MATE_like_9, Uncharacterized subfamily of 1e-05
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 7e-05
cd13141443 cd13141, MATE_like_13, Uncharacterized subfamily o 3e-04
cd13146433 cd13146, MATE_like_6, Uncharacterized subfamily of 5e-04
PRK01766456 PRK01766, PRK01766, multidrug efflux protein; Revi 6e-04
cd13128402 cd13128, MATE_Wzx_like, Wzx, a subfamily of the mu 0.003
cd13124434 cd13124, MATE_SpoVB_like, Stage V sporulation prot 0.004
>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information 
 Score =  297 bits (763), Expect = 2e-95
 Identities = 132/446 (29%), Positives = 214/446 (47%), Gaps = 31/446 (6%)

Query: 113 DLIMLSLPAIAGQAIEPMAQLMETAYIGRLG-PLELASAGVSTSIFNILSKVFNIPLLSV 171
           +++ L+LPAI      P+  L++TA +G LG    L +  + T+IFN L  +F    +  
Sbjct: 4   EILALALPAILSNITVPLLGLVDTAVVGHLGSAAYLGAVALGTTIFNTLFWLFGFLRMG- 62

Query: 172 ATSFVAEDISRSSSKDSTSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALA 231
            T  VA+ +     ++                       +  +  AL+LAL IG+L  L 
Sbjct: 63  TTGLVAQALGAGDREE----------------------AIALLVRALLLALAIGLLLILL 100

Query: 232 MYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAPAVVLSLAIQGIFRGFKDTRTPVFC 291
                 L L ++G S+A  +   A+++L +R +GAPAV+L+    G FRG +DTRTP+  
Sbjct: 101 QSPLLALALLLLGASAA--VAALARQYLRIRILGAPAVLLNYVATGWFRGLQDTRTPLIL 158

Query: 292 LGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKRTILSIPNMKNLH 351
             +GN   + + P+ ++    GV GAA++TV +QY+  LL +W L +R  L   ++    
Sbjct: 159 QIVGNVVNIVLDPLFVFGLGWGVAGAALATVIAQYLGALLGLWLLRRRVRLLGKSLSRRL 218

Query: 352 F-----GDYLRSGGYLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVSMLAD 406
                     +    +  RTLA +      T++AAR G + +AA+QI LQ WL  S   D
Sbjct: 219 PSKAALKRLFKLNRDIFIRTLALLAAFLFFTALAARLGDVILAANQILLQFWLLSSYFLD 278

Query: 407 AQAASGQALIASSFAKGDYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQ 466
             A + +AL+  +   GD    + +    L+ GL  GV LA++       +  LFT D  
Sbjct: 279 GFAYAAEALVGRALGAGDRKAARRVARRLLQWGLGLGVLLALLFFLGGEPIIRLFTDDPA 338

Query: 467 VLGIVRSGLLFVSASQPVTAVAYIFDGLHYGVSDFSYAAYSMMAVGAISSVFLLYAPRVF 526
           VL +  + L +++   P+ A+A++ DG+  G +D  Y   SM+   A+    L     ++
Sbjct: 339 VLALAATYLPWLALLPPIGALAFVLDGIFIGATDTRYLRNSMLVSLAVFLPLLFLLVPLW 398

Query: 527 GLSAVWWGLTLFMSLRVAAGYFRLLS 552
           G   +W  L LFM LR      RL  
Sbjct: 399 GNHGLWLALILFMLLRGLTLALRLPR 424

Escherichia coli DinF is a membrane protein that has been found to protect cells against oxidative stress and bile salts. The expression of DinF is regulated as part of the SOS system. It may act by detoxifying oxidizing molecules that have the potential to damage DNA. Some member of this family have been reported to enhance the virulence of plant pathogenic bacteria by enhancing their ability to grow in the presence of toxic compounds. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR). Length = 424
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|240545 cd13140, MATE_like_1, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA Back     alignment and domain information
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240554 cd13149, MATE_like_2, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM Back     alignment and domain information
>gnl|CDD|240552 cd13147, MATE_MJ0709_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins, similar to Methanocaldococcus jannaschii MJ0709 Back     alignment and domain information
>gnl|CDD|182413 PRK10367, PRK10367, DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family Back     alignment and domain information
>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240550 cd13145, MATE_like_5, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240544 cd13139, MATE_like_14, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240549 cd13144, MATE_like_4, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240553 cd13148, MATE_like_3, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|182293 PRK10189, PRK10189, MATE family multidrug exporter; Provisional Back     alignment and domain information
>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|240546 cd13141, MATE_like_13, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240551 cd13146, MATE_like_6, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|234981 PRK01766, PRK01766, multidrug efflux protein; Reviewed Back     alignment and domain information
>gnl|CDD|240533 cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|240529 cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 571
COG0534455 NorM Na+-driven multidrug efflux pump [Defense mec 100.0
PRK10189478 MATE family multidrug exporter; Provisional 100.0
PRK00187464 multidrug efflux protein NorA; Provisional 100.0
PRK09575453 vmrA multidrug efflux pump VmrA; Reviewed 100.0
PRK10367441 DNA-damage-inducible SOS response protein; Provisi 100.0
PRK01766456 multidrug efflux protein; Reviewed 100.0
TIGR01695502 mviN integral membrane protein MviN. This model re 100.0
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 100.0
TIGR00797342 matE putative efflux protein, MATE family. The MAT 100.0
KOG1347473 consensus Uncharacterized membrane protein, predic 100.0
PRK15099416 O-antigen translocase; Provisional 100.0
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 100.0
COG0728518 MviN Uncharacterized membrane protein, putative vi 100.0
PRK10459492 colanic acid exporter; Provisional 99.96
COG2244480 RfbX Membrane protein involved in the export of O- 99.93
PRK00187464 multidrug efflux protein NorA; Provisional 99.89
COG0534455 NorM Na+-driven multidrug efflux pump [Defense mec 99.88
PRK10189 478 MATE family multidrug exporter; Provisional 99.86
PRK10367 441 DNA-damage-inducible SOS response protein; Provisi 99.85
PRK09575 453 vmrA multidrug efflux pump VmrA; Reviewed 99.84
PRK01766 456 multidrug efflux protein; Reviewed 99.83
TIGR01695502 mviN integral membrane protein MviN. This model re 99.76
TIGR00797 342 matE putative efflux protein, MATE family. The MAT 99.72
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 99.72
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.7
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 99.67
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.67
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.66
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.62
PRK10459492 colanic acid exporter; Provisional 99.56
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 99.54
PRK15099416 O-antigen translocase; Provisional 99.53
COG2244480 RfbX Membrane protein involved in the export of O- 99.41
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 99.06
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 98.98
KOG1347 473 consensus Uncharacterized membrane protein, predic 98.96
PF07260345 ANKH: Progressive ankylosis protein (ANKH); InterP 98.65
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.34
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 98.27
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 98.06
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 98.03
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 97.93
COG4267467 Predicted membrane protein [Function unknown] 97.79
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 97.75
PF07260 345 ANKH: Progressive ankylosis protein (ANKH); InterP 96.96
COG4267 467 Predicted membrane protein [Function unknown] 88.67
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=1.9e-53  Score=450.37  Aligned_cols=431  Identities=27%  Similarity=0.425  Sum_probs=400.8

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhchhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhccCC
Q 008290          107 VQNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSK  186 (571)
Q Consensus       107 ~~~~~~~l~~~~~p~~~~~~~~~l~~~v~~~~l~~lg~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~vs~~~g~~~~~  186 (571)
                      .++..|+++++++|++++++...+++++|++++||+|++++||.++++++..++..... |++.+.++++||++|+||  
T Consensus        12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~~~~~~-gl~~g~~~liaq~~Ga~~--   88 (455)
T COG0534          12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLIIAIFI-GLGTGTTVLVAQAIGAGD--   88 (455)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHcCCc--
Confidence            44588999999999999999999999999999999999999999999999999996655 999999999999999999  


Q ss_pred             CCCCCCCCCCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCCCccchHHHHHHHHHHHhhH
Q 008290          187 DSTSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGA  266 (571)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~i~~~~~  266 (571)
                                          ++++++..++++.++++++++..++.+++.++++.+++.++|  +.+.+.+|+++..++.
T Consensus        89 --------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~--v~~~a~~Yl~i~~~~~  146 (455)
T COG0534          89 --------------------RKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAE--VLELAAEYLRIILLGA  146 (455)
T ss_pred             --------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHh--HHHHHHHHHHHHHHHH
Confidence                                999999999999999999999999999999999999998887  9999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHhHHHHhh-cC-cchhHHHHHHHHHHHHHHHHHHHHHHhcCc---
Q 008290          267 PAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYY-FK-LGVTGAAISTVGSQYMVTLLMIWYLNKRTI---  341 (571)
Q Consensus       267 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~-~~-~Gi~Gaa~a~~~~~~~~~~~~~~~~~~~~~---  341 (571)
                      |+..++.++.+++|+.||+|.+++..++++++|+++|++|+++ ++ +|+.|+|+||.+++++.+++.++++.|+++   
T Consensus       147 ~~~~~~~~~~~~lr~~G~~~~~m~~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~  226 (455)
T COG0534         147 PFALLSFVLSGILRGLGDTKTPMYILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLS  226 (455)
T ss_pred             HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhh
Confidence            9999999999999999999999999999999999999999999 57 999999999999999999999999987663   


Q ss_pred             cc---CCCcchhcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 008290          342 LS---IPNMKNLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVSMLADAQAASGQALIAS  418 (571)
Q Consensus       342 ~~---~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~ii~~lG~~~vaa~~i~~~i~~l~~~i~~~l~~a~~~~vs~  418 (571)
                      ..   ..++++..+|++++.|+|..++...+...+...+.+++++|++++|+|+++.++.++.++++.|++++.++++++
T Consensus       227 ~~~~~~~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~  306 (455)
T COG0534         227 LFKKKLLKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFIFMPPFGIAQAVTILVGQ  306 (455)
T ss_pred             hhhhhccCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11   224556678899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc
Q 008290          419 SFAKGDYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLFVSASQPVTAVAYIFDGLHYGV  498 (571)
Q Consensus       419 ~~g~~~~~~~~~~~~~~l~~~~~i~~~~~~~l~~~~~~i~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~  498 (571)
                      ++|++|+|++|+..+.++.++.++++..++++++++++++++|++|+++.+.+..++++.++..++++.+.+..+++||.
T Consensus       307 ~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~  386 (455)
T COG0534         307 NLGAGNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGA  386 (455)
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHH-HHHHHHHHHhccc-cchhHHHHHHHHHHHHHHHHHHHHHHhccCChhhhhhcC
Q 008290          499 SDFSYAAYSMMAVG-AISSVFLLYAPRV-FGLSAVWWGLTLFMSLRVAAGYFRLLSKNGPWWFLQKHM  564 (571)
Q Consensus       499 g~~~~~~~~~~~~~-l~~i~~~~~l~~~-~Gi~Gv~~a~~i~~~i~~~~~~~~l~~~~~~w~~~~~~~  564 (571)
                      ||+|.+++.++... ...+++.+++... +|..|+|+++.+++.++.+...+++  ++.+|+....+.
T Consensus       387 g~~~~~~~~~~~~~~~~~lp~~~~l~~~~~g~~Gvw~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  452 (455)
T COG0534         387 GDAKIPFIISLLSYWGFRLPLAYLLGFFFLGLAGVWIGFPLSLILRAILLLLRL--RRGRWRRKAVAA  452 (455)
T ss_pred             CCcHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHH--HHhhhhhhhhhc
Confidence            99999998877744 3345666666555 9999999999999999999999888  667777665443

>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query571
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 2e-29
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460 Back     alignment and structure
 Score =  120 bits (303), Expect = 2e-29
 Identities = 84/478 (17%), Positives = 163/478 (34%), Gaps = 56/478 (11%)

Query: 114 LIMLSLPAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSVAT 173
           LI L+ P +     +     ++T   G +  +++A+  ++ SI+     +F + LL    
Sbjct: 14  LIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSI-LFGVGLLMALV 72

Query: 174 SFVAEDISRSSSKDSTSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMY 233
             VA+                              K+   V   L+LAL + +     ++
Sbjct: 73  PVVAQLNGAGR----------------------QHKIPFEVHQGLILALLVSVPIIAVLF 110

Query: 234 FGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAPAVVLSLAIQGIFRGFKDTRTPVFCLG 293
             +   +  M +  A  M      ++       PA +L  A++    G   T+  +    
Sbjct: 111 Q-TQFIIRFMDVEEA--MATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGF 167

Query: 294 LGNFSAVFMFPMLMY----YFKLGVTGAAISTVGSQYMVTLLMIWYLNKR---------T 340
           +G    + +  + +Y      +LG  G  ++T    +++ LL+++Y+             
Sbjct: 168 IGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFE 227

Query: 341 ILSIPNMKNLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLS 400
               P  K        R G  +       V    +   + A  G+  +AAHQ+ L     
Sbjct: 228 TFHKPQPK--ELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSL 285

Query: 401 VSMLADAQAASGQALIASSFAKGDYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATL 460
           V M   +  A+    +     + D        +  L TGL T    A++       +A L
Sbjct: 286 VFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALL 345

Query: 461 FTSDTQVLGIVRSGLLFVSASQPVTAVAYIFDGLHYGVSDFSYAAYSM--------MAVG 512
           +T +  V+ +    LLF +  Q + AV  +  G   G  D +   +          +  G
Sbjct: 346 YTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTG 405

Query: 513 AISSVFLLYAPRVFGLSAVWWGLTLFMSLRVAAGYFRLLSKNGPWWFLQKHMPKLEIA 570
            I  +      +  G    W G  +   L  AA            ++LQK    +++ 
Sbjct: 406 YILGMTNWLTEQPLGAKGFWLGFII--GLSAAALMLGQR-----LYWLQKQSDDVQLH 456

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query571
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 100.0
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 99.8
1pw4_A451 Glycerol-3-phosphate transporter; transmembrane, i 91.0
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
Probab=100.00  E-value=2e-45  Score=391.96  Aligned_cols=419  Identities=19%  Similarity=0.223  Sum_probs=384.6

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhchhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhccCC
Q 008290          107 VQNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSK  186 (571)
Q Consensus       107 ~~~~~~~l~~~~~p~~~~~~~~~l~~~v~~~~l~~lg~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~vs~~~g~~~~~  186 (571)
                      .++..|++++.++|.++++++..+.+++|+.+++|+|++++|+++++.++..+... +..|++++..+.++|++|++|  
T Consensus         7 ~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~~~-~~~g~~~~~~~~is~~~g~~~--   83 (460)
T 3mkt_A            7 YKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSIL-FGVGLLMALVPVVAQLNGAGR--   83 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHHHH-HHHHHHHHHGGGCTTTTSSSS--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCCC--
Confidence            34678999999999999999999999999999999999999999999999777664 456899999999999999988  


Q ss_pred             CCCCCCCCCCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCCCccchHHHHHHHHHHHhhH
Q 008290          187 DSTSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGA  266 (571)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~i~~~~~  266 (571)
                                          +++.++.++.++.+.++++++.+++ ++++++++.+++.+++  ..+.+..|+++++++.
T Consensus        84 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~--~~~~~~~~l~i~~~~~  140 (460)
T 3mkt_A           84 --------------------QHKIPFEVHQGLILALLVSVPIIAV-LFQTQFIIRFMDVEEA--MATKTVGYMHAVIFAV  140 (460)
T ss_dssp             --------------------TTTHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCSSCSSTTH--HHHHHHHHHTTGGGHH
T ss_pred             --------------------hhHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCHH--HHHHHHHHHHHHHHHH
Confidence                                7888899999999999999998765 7788999999887776  8889999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHhHHHHhh----cCcchhHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 008290          267 PAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYY----FKLGVTGAAISTVGSQYMVTLLMIWYLNKRTIL  342 (571)
Q Consensus       267 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~----~~~Gi~Gaa~a~~~~~~~~~~~~~~~~~~~~~~  342 (571)
                      ++..+....++++++.+|++.+++.++++.++|+++++++++.    +++|+.|+++++.+++.+..++..++++|+++.
T Consensus       141 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~  220 (460)
T 3mkt_A          141 PAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRL  220 (460)
T ss_dssp             HHHHHHHHHTTTTCTTSCCTTTHHHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSC
T ss_pred             HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcch
Confidence            9999999999999999999999999999999999999999976    379999999999999999999988888765432


Q ss_pred             cC-------CCcchhcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 008290          343 SI-------PNMKNLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVSMLADAQAASGQAL  415 (571)
Q Consensus       343 ~~-------~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~ii~~lG~~~vaa~~i~~~i~~l~~~i~~~l~~a~~~~  415 (571)
                      .+       .+.++..+|++++.++|.+++.+...+...+++.+++++|++++|+|+++.++.++..++..+++++..|.
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~  300 (460)
T 3mkt_A          221 AHVKVFETFHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIR  300 (460)
T ss_dssp             CCCCCSCCCCSSTTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhcccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            21       13345567899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 008290          416 IASSFAKGDYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLFVSASQPVTAVAYIFDGLH  495 (571)
Q Consensus       416 vs~~~g~~~~~~~~~~~~~~l~~~~~i~~~~~~~l~~~~~~i~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~l  495 (571)
                      +++++|++|++++++..++++.++..++++.++++.++++++..+|++|+++.+.+.+++++++++.++++++.+..+++
T Consensus       301 i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l  380 (460)
T 3mkt_A          301 VGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSL  380 (460)
T ss_dssp             HHHHHHSSCCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999989999999999999999999999999999


Q ss_pred             HhcCChhHHHHHHHHHH-HHHHHHHHHhccc-------cchhHHHHHHHHHHHHHHHHHHHHHH
Q 008290          496 YGVSDFSYAAYSMMAVG-AISSVFLLYAPRV-------FGLSAVWWGLTLFMSLRVAAGYFRLL  551 (571)
Q Consensus       496 ~~~g~~~~~~~~~~~~~-l~~i~~~~~l~~~-------~Gi~Gv~~a~~i~~~i~~~~~~~~l~  551 (571)
                      ++.||+|.+++.+.+.. +.++++.+++.+.       +|+.|+|+++.+++++..++..++++
T Consensus       381 ~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~  444 (460)
T 3mkt_A          381 RGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLY  444 (460)
T ss_dssp             GGGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred             hcCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998877 7778887777666       99999999999999999888876663
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00