Citrus Sinensis ID: 008331

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570
Protein Sequence
MGLQFWRFAVIIFLFHGFCFAEKAPYYTFVKDATSAPLISYYDYIIVGGGTSGCPLAATLSQNATVLLLEKGGSPYENPNITDTGNFATTLLDPSPTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRASLRYVREVGWTESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLLEAGVLPYNGFTFDHIYGTKVSGTIFDEDGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMNALFVPSARPVEVSLVQVVGITRFDSYIETASGLSLAPSWAQGLTRDYSSFLNKTDIPSLVTPETVAEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHLRLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLMVNIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVDRVVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLGRYMGLRILQDRDRISF
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHcccccccccccccccccccccccccEEEEccccHHHHHHccccccccEEEEccccccccccccccHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccHHHHHHHcccccccccccccHHHHHHHHHccccccccccccccccEEEEEEEEcccccccccccccccccccccEEEEccEEEEEEEEEccccccEEEEEEEEEccccEEcEEEEcccccEEEEccccccHHHHHHHcccccHHHHHHcccccccccccccccccccccccEEEEcccccEEcHHHHHHHHHHHHHHHHccccccccccccEEEEEcccccccccccccccHHHHHHHHHHHcccccccEEEEEEEcccccccccEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHcccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccEEEcccccccccccccHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHccccccccccHHHHEEEHHHcccEEEEEEEEEcccccHHHHHHHHcccccEEEEcccEcHHHcHHHHEHHHHHHHHccccccccEEEEEcccccEEEEEcEccHHHHccccEEcEccHHHHHHccccHHHHHHHHHHHHHHHcEcccccHHHHHHHHHHHHcccccEEEEccEcccEEEEcEEcEccccEEccHHHHHHHcccccEEEEEccEEEEEEEccccccccEEEEEEEEEcccccccEEEEEEEEEEEEEccHHHHHHHHHHHccEEcHHHHHHccccccEEcccccEEEEccEEEEEEEccccccccccccEEEEcHHHHHHHHccccccccccccccEEEcccccccccccEEEccHHEHcccccccccccEEEEEEEccccccccccccEEEEEcccccccccEcccccccHHHHHHHHHHHHHHHHHHHcccHHHHccccccHHHHHHHHHccccccccccccccHHHHHHHHHHHcEEccccEEEccEcccEccccEEcccEcEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MGLQFWRFAVIIFLFHGfcfaekapyytfvkdatsaplisyydyiivgggtsgcplaATLSQNATVLLLEkggspyenpnitdtgnfattlldpsptspsqqfisedgvYNARARvlgggsvinagfYTRASLRYVREVGWTESLVNSSYEWVEkkvaheppmlqwQSAVRDGLleagvlpyngftfdhiygtkvsgtifdedghrhSAADlleyadpekLTVYLRAVVQRIKftetgrakptahcvTFYDHVGARHRAClnnggkneiilsagaigspqllmlsgvgpanelrkrgirvvvdqpnvgqgmsdnpmnalfvpsarpvEVSLVQVVGITRFDsyietasglslapswaqgltrdyssflnktdipslvtpeTVAEAVETVNSYLNGTIRAGVIVEkimgprstghlrlrtldaddnpsvtfnyfqepedLVRCVQGMRTIIDVLNsralskfrypdvsVQELIDLMVniptnlrprhvvgASISLEQFCRDTVMTIWHyhggcqvdrvvdrdykvlgvdglrvidgstfynspgtnpqaTCMMLGRYMglrilqdrdrisf
Flexible Loop (DISEMBL)
MGLQFWRFAVIIFLFHGFCFAEKAPYYTFVKDATSAPLISYYDYIIVGGGTSGCPLAATLSQNATVLLLEKGGSPYENPNITDTGNFATTLLDPSPTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRASLRYVREVGWTESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLLEAGVLPYNGFTFDHIYGTKVSGTIFDEDGHRHSAADLLEYADPEKLTVYLRAVVQRIKftetgrakptahCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMNALFVPSARPVEVSLVQVVGITRFDSYIETASGLSLAPSWAQGLTRDYSSFLNKTDIPSLVTPETVAEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHLRLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVlnsralskfrypdVSVQELIDLMVNIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVDRVVDRDYKVLGVDGLrvidgstfynspgtnpqaTCMMLGRYMGLrilqdrdrisf
Low Complexity Region (SEG)
MGLQFWRFAVIIFLFHGFCFAEKAPYYTFVKDATSAPLISYYDYIIVGGGTSGCPLAATLSQNATVLLLEKGGSPYENPNITDTGNFATTLLDPSPTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRASLRYVREVGWTESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLLEAGVLPYNGFTFDHIYGTKVSGTIFDEDGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMNALFVPSARPVEVSLVQVVGITRFDSYIETASGLSLAPSWAQGLTRDYSSFLNKTDIPSLVTPETVAEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHLRLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLMVNIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVDRVVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLGRYMGLRILQDRDRISF
Disordered region (IsUnstruct)
**LQFWRFAVIIFLFHGFCFAEKAPYYTFVKDATSAPLISYYDYIIVGGGTSGCPLAATLSQNATVLLLEK***********************************DGVYNARARVLGGGSVINAGFYTRASLRYVREVGWTESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLLEAGVLPYNGFTFDHIYGTKVSGTIFDEDGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQ************NALFVPSARPVEVSLVQVVGITRFDSYIETASGLSLAPSWAQGLTRDYSSFLNKTDIPSLVTPETVAEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHLRLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLMVNIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVDRVVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLGRYMGLRIL********
Disordered Region (DISOPRED)
**LQFWRFAVIIFLFHGFCFAEK*************PLISYYDYIIVGGGTSGCPLAATLSQNATVLLLEKGGSPYENPNITDTGNFATTLLDPSPTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRASLRYVREVGWTESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLLEAGVLPYNGFTFDHIYGTKVSGTIFDEDGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMNALFVPSARPVEVSLVQVVGITRFDSYIETASGLSLAPSWAQGLTRDYSSFLNKTDIPSLVTPETVAEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHLRLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLMVNIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVDRVVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLGRYMGLRILQDRDR***
Disordered Region (DISEMBL)
MGLQFWRFAVIIFLFHGFCFAEKAPYYTFVKDATSAPLISYYDYIIVGGGTSGCPLAATLSQNATVLLLEKGGSPYENPNITDTGNFATTLLDP*********ISEDGVYNARARVLGGGSVINAGFYTRASLRYVREVGWTESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLLEAGVLPYNGFTFDHIYGTKVSGTIFDEDGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMNALFVPSARPVEVSLVQVVGITRFDSYIETASGLSLAPSWAQGLTRDYSSFLNKTDIPSLVTPETVAEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHLRLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLMVNIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVDRVVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLGRYMGLRILQDRDRISF
Disordered Region (DISPRO)
*GLQFWRFAVIIFLFHGFCFAEKAPYYTFVKDATSAPLISYYDYIIVGGGTSGCPLAATLSQNATVLLLEKGGSPYENPNITDTGNFATTLLDPSPTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRASLRYVREVGWTESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLLEAGVLPYNGFTFDHIYGTKVSGTIFDEDGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMNALFVPSARPVEVSLVQVVGITRFDSYIETASGLSLAPSWAQGLTRDYSSFLNKTDIPSLVTPETVAEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHLRLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLMVNIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVDRVVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLGRYMGLRILQDRD****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGLQFWRFAVIIFLFHGFCFAEKAPYYTFVKDATSAPLISYYDYIIVGGGTSGCPLAATLSQNATVLLLEKGGSPYENPNITDTGNFATTLLDPSPTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRASLRYVREVGWTESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLLEAGVLPYNGFTFDHIYGTKVSGTIFDEDGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMNALFVPSARPVEVSLVQVVGITRFDSYIETASGLSLAPSWAQGLTRDYSSFLNKTDIPSLVTPETVAEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHLRLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLMVNIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVDRVVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLGRYMGLRILQDRDRISF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	570	2.2.26 [Sep-21-2011]
Q9S746	594	Protein HOTHEAD OS=Arabid	no	no	0.914	0.877	0.518	1e-156
Q9SSM2	552	(R)-mandelonitrile lyase-	no	no	0.878	0.907	0.469	1e-127
P52707	573	(R)-mandelonitrile lyase	N/A	no	0.880	0.876	0.413	1e-108
O50048	576	(R)-mandelonitrile lyase	N/A	no	0.891	0.881	0.410	1e-106
O82784	574	(R)-mandelonitrile lyase	N/A	no	0.880	0.874	0.408	1e-102
O24243	559	(R)-mandelonitrile lyase	N/A	no	0.891	0.908	0.403	1e-102
P52706	563	(R)-mandelonitrile lyase	N/A	no	0.882	0.893	0.406	1e-102
Q945K2	563	(R)-mandelonitrile lyase	N/A	no	0.882	0.893	0.400	1e-100
Q47944	531	L-sorbose 1-dehydrogenase	yes	no	0.824	0.885	0.276	6e-27
C3MIE4	549	Choline dehydrogenase OS=	no	no	0.854	0.887	0.253	2e-26

>sp|Q9S746|HTH_ARATH Protein HOTHEAD OS=Arabidopsis thaliana GN=HTH PE=1 SV=1

 Score =  550 bits (1418), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 276/532 (51%), Positives = 364/532 (68%), Gaps = 11/532 (2%)

Query: 40  SYYDYIIVGGGTSGCPLAATLSQNATVLLLEKGGSPYENPNITDTGNFATTLLDPSPTSP 99
           S YDYI++GGGT+GCPLAATLSQN +VL+LE+GG P+ N N++   NF   L D S +S 
Sbjct: 61  SSYDYIVIGGGTAGCPLAATLSQNFSVLVLERGGVPFTNANVSFLRNFHIGLADISASSA 120

Query: 100 SQQFISEDGVYNARARVLGGGSVINAGFYTRASLRYVREVGWTESLVNSSYEWVEKKVAH 159
           SQ F+S DGVYNARARVLGGGS INAGFY+RA   +V+  GW   LV  SY WVE+++ H
Sbjct: 121 SQAFVSTDGVYNARARVLGGGSCINAGFYSRADAAFVKRAGWDPKLVKESYPWVEREIVH 180

Query: 160 EPPMLQWQSAVRDGLLEAGVLPYNGFTFDHIYGTKVSGTIFDEDGHRHSAADLLEYADPE 219
           +P +  WQ A+RD LLE GV P+NGFT+DH+ GTK+ GTIFD  G RH+AA+LL YA+P+
Sbjct: 181 QPKLTLWQKALRDSLLEVGVRPFNGFTYDHVSGTKIGGTIFDRFGRRHTAAELLAYANPQ 240

Query: 220 KLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSP 279
           KL V + A VQ+I F  +G  +P    V F D  G +H+A L+N   +E+ILS+GAIGSP
Sbjct: 241 KLRVLIYATVQKIVFDTSG-TRPRVTGVIFKDEKGNQHQALLSNRKGSEVILSSGAIGSP 299

Query: 280 QLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMNALFVPSARPVEVSLVQVVGITR 339
           Q+LMLSG+GP  EL++  I VV++  +VG+GM+DNPMN + VPS  P+E SL+Q VGIT+
Sbjct: 300 QMLMLSGIGPKKELQRLKIPVVLENEHVGKGMADNPMNTILVPSKAPIEQSLIQTVGITK 359

Query: 340 FDSYIETASGLSLAPSWAQGLTRDYSSFLNKTD----IPSLVTPETVAEAVETVNSY-LN 394
              Y+E ++G   +P   + +   Y    NK +    IP+        +A  T N Y L+
Sbjct: 360 MGVYVEASTGFGQSP---ESIHTHYGIMSNKNELFSTIPAKQRRPEATQAYITRNKYQLH 416

Query: 395 GTIRAGVIVEKIMGPRSTGHLRLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLN 454
                  I+EK+  P S GHL L   + DDNPSVTFNYF+ P DL RCV+ +R +  V+ 
Sbjct: 417 EAFNGSFILEKLAYPISRGHLSLVNTNVDDNPSVTFNYFKHPVDLQRCVEAIRLVSKVVT 476

Query: 455 S-RALSKFRYPDVSVQELIDLMVNIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQ 513
           S R L+  +    +V +++ L V    NLRP+  +  + S+ QFC+DTV+TIWHYHGGC 
Sbjct: 477 SNRFLNYTQCDKQNVHKMLSLSVKANINLRPKQ-LNDTKSMAQFCKDTVVTIWHYHGGCL 535

Query: 514 VDRVVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLGRYMGLRILQDR 565
           V +VV  + KVLGVD LRVIDGSTF  SPGTNPQAT MM+GRYMG++IL++R
Sbjct: 536 VGKVVSPNRKVLGVDRLRVIDGSTFDESPGTNPQATMMMMGRYMGVKILRER 587

Probable FAD-dependent enzyme. Involved in regulating post-genital organ fusion. Required to limit cellular interactions between contacting epidermal cells during floral development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SSM2|MDLL_ARATH (R)-mandelonitrile lyase-like OS=Arabidopsis thaliana GN=At1g73050 PE=2 SV=1

 Score =  457 bits (1175), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 261/556 (46%), Positives = 335/556 (60%), Gaps = 55/556 (9%)

Query: 26  YYTFVKDATSAPLISYYDYIIVGGGTSGCPLAATLSQNATVLLLEKGGSPYENPNITDTG 85
           +  F+ +AT      YYDYIIVGGGT+GCPLAATLSQ+  VLLLE+GG PY  PN+    
Sbjct: 38  FMRFISNATDFASEDYYDYIIVGGGTAGCPLAATLSQSFRVLLLERGGVPYNRPNVMSHD 97

Query: 86  NFATTLLDPSP-TSPSQQFISEDGVYNARARVLGGGSVINAGFYTRASLRYVREVG--WT 142
            F TTL D +   SP+Q FISE+GV NAR RVLGG S INAGFY+RA  ++    G  W 
Sbjct: 98  GFLTTLTDVNNFDSPAQSFISEEGVPNARGRVLGGSSAINAGFYSRADKQFFENSGLVWD 157

Query: 143 ESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLLEAGVLPYNGFTFDHIYGTKVSGTIFDE 202
            S VN SYEWVE+ +   P +  WQ+A+RD LLE GV P+NGFT +H  GTK+ G+ FD 
Sbjct: 158 LSSVNQSYEWVERAIVFRPQLRTWQTAIRDALLEVGVHPFNGFTLEHKVGTKIGGSTFDR 217

Query: 203 DGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTET---GRAKPTAHCVTFYDHVGARHRA 259
            G RHS+ADLL YA    + V + A V+R+    +     +  +A  V + D +G  H A
Sbjct: 218 TGRRHSSADLLRYARSSNIRVAVYATVERVLLASSPSVSGSNVSAIGVVYRDQLGRFHHA 277

Query: 260 CLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMNAL 319
            + + G  E+ILSAGA+GSPQLL LSG+GP + L   GI V +DQP+VG  + DNP N +
Sbjct: 278 LIRDRG--EVILSAGALGSPQLLFLSGIGPRSYLSTWGIPVALDQPHVGDFVYDNPRNGI 335

Query: 320 FVPSARPVEVSLVQVVGITRFDSYIETASGLSLAPSWAQGLTRDYSSFLNKTDIPSLVTP 379
            +    P+E SL+QVVG+T   +++E AS +     +A  L   +S F+     P L  P
Sbjct: 336 SIVPPVPMENSLIQVVGVTEDGAFLEAASNVI---PFASPL---HSVFIRAPASP-LYVP 388

Query: 380 ETVAEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHLRLRTLDADDNPSVTFNYFQEPEDL 439
            T                    I+EKI+GP S G LRL + D   NP V FNYF +P+DL
Sbjct: 389 VTT-------------------IMEKILGPVSIGLLRLASTDVRINPVVRFNYFSDPQDL 429

Query: 440 VRCVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLMVNIPTNLRPRHVVGASISLEQ--- 496
            RCV G R I ++L SRA+              D M+      R    VGA + ++Q   
Sbjct: 430 ERCVNGTRKIGEILRSRAMQ-------------DFMIREWFGNRRFRFVGAPLPVDQSND 476

Query: 497 -----FCRDTVMTIWHYHGGCQVDRVVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCM 551
                FCR TV TIWHYHGG  V +VVD D KV+GV+ LR++DGSTF  SPGTNPQAT M
Sbjct: 477 LVMADFCRRTVSTIWHYHGGAVVGKVVDSDLKVIGVNSLRLVDGSTFNISPGTNPQATLM 536

Query: 552 MLGRYMGLRILQDRDR 567
           MLGRYMGL++L++R R
Sbjct: 537 MLGRYMGLKMLRERMR 552

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: 0

>sp|P52707|MDL3_PRUSE (R)-mandelonitrile lyase 3 OS=Prunus serotina GN=MDL3 PE=2 SV=1

 Score =  392 bits (1008), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 226/546 (41%), Positives = 319/546 (58%), Gaps = 44/546 (8%)

Query: 26  YYTFVKDATSAPLISYYDYIIVGGGTSGCPLAATLSQNATVLLLEKGGSPYENPNITDTG 85
           Y +FV DAT   L   YDYIIVGGGT+GCPLAATLS N +VL+LE+G  P E PN+  + 
Sbjct: 38  YLSFVYDATDPELEGSYDYIIVGGGTAGCPLAATLSANYSVLVLERGSLPTEYPNLLISD 97

Query: 86  NFATTLL-DPSPTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRASLRYVREVG--WT 142
            F   L  +    +P ++F+SEDG+ N R RVLGG S+INAG Y RA+  +  + G  W 
Sbjct: 98  GFVYNLQQEDDGKTPVERFVSEDGIDNVRGRVLGGTSMINAGVYVRANTSFFNQTGIEWD 157

Query: 143 ESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLLEAGVLPYNGFTFDHIYGTKVSGTIFDE 202
             LVN +YEWVE  +  EP    WQ+ +    LEAG+LP NGF+ DH+ GT+++G+ FD 
Sbjct: 158 MDLVNQTYEWVEDTIVFEPDSQTWQTVIGTAYLEAGILPNNGFSVDHLAGTRLTGSTFDN 217

Query: 203 DGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLN 262
           +G RH++ +LL   DP  L V ++A V++I F+ +  +  TA  V + D  G  H+A + 
Sbjct: 218 NGTRHASDELLNKGDPNNLRVAVQAAVEKIIFS-SNTSGVTAIGVIYTDSNGTTHQAFVR 276

Query: 263 NGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMNALFVP 322
             G+ E+ILSAG IGSPQLL+LSGVGP + L    I VV   P VGQ + DNP N + + 
Sbjct: 277 --GEGEVILSAGPIGSPQLLLLSGVGPESYLTSLNISVVASHPYVGQYIYDNPRNFINIL 334

Query: 323 SARPVEVSLVQVVGITRFDSYIETASGLSL-APSWAQGLTRDYSSFLNKTDIPSLVTPET 381
              P+E S V V+GIT  D Y  + S L    P +         SF   T  P  +  +T
Sbjct: 335 PPNPIEASTVTVLGITS-DFYQCSISSLPFDTPPF---------SFFPTTSYP--LPNQT 382

Query: 382 VAEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHLRLR-TLDADDNPSVTFNYFQEPEDLV 440
            A                  IV K+ GP S G + L  + D    P+V FNY+    DL 
Sbjct: 383 FAH-----------------IVNKVPGPLSHGTVTLNSSSDVRVGPNVKFNYYSNLTDLS 425

Query: 441 RCVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLM-VNIPTNLRPRHVVGASISLEQFCR 499
            CV GM+ + +VL++ AL  ++  D+   +  +++ + +P N           + E FCR
Sbjct: 426 HCVSGMKKLGEVLSTDALEPYKVEDLPGIDGFNILGIPLPENQT------DDAAFETFCR 479

Query: 500 DTVMTIWHYHGGCQVDRVVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLGRYMGL 559
           ++V + WHYHGGC V +V+D  ++V G++ LRV+DGSTF ++P ++PQ   +MLGRYMG+
Sbjct: 480 ESVASYWHYHGGCLVGKVLDDGFRVTGINALRVVDGSTFPSTPASHPQGFYLMLGRYMGI 539

Query: 560 RILQDR 565
           +ILQ+R
Sbjct: 540 QILQER 545

Involved in cyanogenesis, the release of HCN from injured tissues. Catalyzes the stereospecific addition of HCN to a variety of aldehydes in vitro. It is a major seed constituent, and could have the additional role of a storage form for reduced nitrogen.

Prunus serotina (taxid: 23207)

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: 0

>sp|O50048|MDL2_PRUSE (R)-mandelonitrile lyase 2 OS=Prunus serotina GN=MDL2 PE=2 SV=1

 Score =  385 bits (990), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 226/550 (41%), Positives = 310/550 (56%), Gaps = 42/550 (7%)

Query: 21  AEKAPYYTFVKDATSAPLISYYDYIIVGGGTSGCPLAATLSQNATVLLLEKGGSPYENPN 80
           A    Y  FV DA    L   YDYIIVGGGT+GCPLAATLS N +VL+LE+G  P E PN
Sbjct: 34  AHDFSYLEFVYDANDTELEGTYDYIIVGGGTAGCPLAATLSANYSVLVLERGTLPTEYPN 93

Query: 81  ITDTGNFATTLL-DPSPTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRASLRYVREV 139
           +  +  F   L  +    +P ++F+S DG+ N R RVLGG S+INAG Y RA+  +  + 
Sbjct: 94  LLTSDGFIYNLQQEDDGQTPVERFVSGDGIDNVRGRVLGGTSMINAGVYVRANTSFFNQT 153

Query: 140 G--WTESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLLEAGVLPYNGFTFDHIYGTKVSG 197
           G  W   LVN +Y+WVE  +  +P    WQ+      LE G+LP NGF+ DH+ GT+++G
Sbjct: 154 GIEWDMDLVNKTYDWVEDTIVFKPDFQFWQNLTGTAFLEVGILPDNGFSLDHLEGTRLTG 213

Query: 198 TIFDEDGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARH 257
           + FD +G RH++ +LL   DP  L V + A V++I F+ +  +  TA  V + D  G  H
Sbjct: 214 STFDNNGTRHASDELLNKGDPNNLRVAVHAAVEKIIFS-SDSSGVTAIGVIYTDSNGTTH 272

Query: 258 RACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMN 317
           +A +   G  E+ILSAG IGSPQLL+LSGVG  + L    I VV   P VGQ + DNP N
Sbjct: 273 QAFVR--GDGEVILSAGPIGSPQLLLLSGVGLESYLTSLNISVVASHPYVGQYIYDNPRN 330

Query: 318 ALFVPSARPVEVSLVQVVGITRFDSYIETASGLSLAPSWAQGLTRDYSSFLNKTDIPSLV 377
            + +    P+E S V V+GIT  D Y  + S L  +       T  +  F N    P+  
Sbjct: 331 FINILPPNPIEASTVTVLGITS-DFYQCSISSLPFS-------TAPFGFFPN----PTYP 378

Query: 378 TPETVAEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHLRLR-TLDADDNPSVTFNYFQEP 436
            P T                    IV K+ GP S G + L+ T D    P+VTFNY+   
Sbjct: 379 LPNTTFAH----------------IVNKVPGPLSHGTVLLQSTSDVRVAPNVTFNYYSNT 422

Query: 437 EDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLM-VNIPTNLRPRHVVGASISLE 495
            DL  CV GM+ I + L+S AL  ++  D+   E  D++ + +P N           + E
Sbjct: 423 TDLAHCVSGMKKIGEFLSSDALKPYKVEDLPGIEGFDILGIPLPENQT------DDAAFE 476

Query: 496 QFCRDTVMTIWHYHGGCQVDRVVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLGR 555
            FCR+ V + WHYHGGC V  V+D D++V G++ LRV+DGSTF ++P ++PQ   +MLGR
Sbjct: 477 TFCREAVASYWHYHGGCLVGEVLDDDFRVTGINALRVVDGSTFPSTPASHPQGFYLMLGR 536

Query: 556 YMGLRILQDR 565
           YMG +ILQ+R
Sbjct: 537 YMGTKILQER 546

Involved in cyanogenesis, the release of HCN from injured tissues. Catalyzes the stereospecific addition of HCN to a variety of aldehydes in vitro. It is a major seed constituent, and could have the additional role of a storage form for reduced nitrogen.

Prunus serotina (taxid: 23207)

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: 0

>sp|O82784|MDL4_PRUSE (R)-mandelonitrile lyase 4 OS=Prunus serotina GN=MDL4 PE=2 SV=1

 Score =  374 bits (960), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 223/546 (40%), Positives = 310/546 (56%), Gaps = 44/546 (8%)

Query: 26  YYTFVKDATSAPLISYYDYIIVGGGTSGCPLAATLSQNATVLLLEKGGSPYENPNITDTG 85
           Y  FV +A    L   YDYIIVGGGTSGCPLAATLS N +VL+LE+G    E PN     
Sbjct: 39  YLKFVYNAVDLELEGSYDYIIVGGGTSGCPLAATLSANYSVLVLERGTIATEYPNTLTVD 98

Query: 86  NFATTLLDPSP-TSPSQQFISEDGVYNARARVLGGGSVINAGFYTRASLRYVREVG--WT 142
            FA  L       +P ++F+SEDG+ N R+R+LGG ++INAG Y RA+  +    G  W 
Sbjct: 99  GFAYNLQQQDDGKTPVERFVSEDGIDNVRSRILGGTTIINAGVYARANESFYNNSGVEWD 158

Query: 143 ESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLLEAGVLPYNGFTFDHIYGTKVSGTIFDE 202
             LVN +YEWVE  + ++P    WQS      LEAGV P NGF   H  GT+++G+ FD 
Sbjct: 159 LDLVNEAYEWVEDAIVYKPSNQSWQSITGTAFLEAGVHPDNGFGLVHEEGTRLTGSTFDN 218

Query: 203 DGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLN 262
            G RH++ +LL   DP+ L V + A VQ+I F+ T  +  TA  V + D  G  HRA ++
Sbjct: 219 SGTRHASDELLNKGDPDNLKVAVEAAVQKIIFS-TESSGLTAVGVVYTDSNGTSHRALVS 277

Query: 263 NGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMNALFVP 322
             GK E+ILSAG +G+PQLL+LSGVGP + L    I VV   P VGQ ++DNP N + + 
Sbjct: 278 --GKGEVILSAGTLGTPQLLLLSGVGPESYLTSLNISVVASHPYVGQYVNDNPRNFINIL 335

Query: 323 SARPVEVSLVQVVGITRFDSYIETASGLSL-APSWAQGLTRDYSSFLNKTDIPSLVTPET 381
              P+E S V V+GIT  D Y  + S L    P ++   T  Y        +P+    +T
Sbjct: 336 PPNPIEPSTVTVLGITS-DFYQCSLSSLPFDTPPFSLFPTTSYP-------LPN----QT 383

Query: 382 VAEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHLRLR-TLDADDNPSVTFNYFQEPEDLV 440
            A                  IV K+ GP S G L L+ + +    P+V FNY  +P DL 
Sbjct: 384 FAH-----------------IVSKVPGPLSAGSLTLQSSSNVSVAPNVKFNYCSDPVDLT 426

Query: 441 RCVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLM-VNIPTNLRPRHVVGASISLEQFCR 499
            CV GM+ I   L++ AL  ++  D+   +  +++   +P N           + E+FCR
Sbjct: 427 HCVSGMKKIGVFLSTDALKPYKVDDLPGIDGFNILGTPLPENQT------DDAAFEKFCR 480

Query: 500 DTVMTIWHYHGGCQVDRVVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLGRYMGL 559
           DTV + WHYHGG  V +V+D +++V G++ LRV+DGSTF  +P ++PQ   +MLGRY+G 
Sbjct: 481 DTVASYWHYHGGAIVGKVIDGNFRVTGINALRVVDGSTFPATPASHPQGFYLMLGRYVGT 540

Query: 560 RILQDR 565
           +I+Q+R
Sbjct: 541 KIVQER 546

Involved in cyanogenesis, the release of HCN from injured tissues. Catalyzes the stereospecific addition of HCN to a variety of aldehydes in vitro. It is a major seed constituent, and could have the additional role of a storage form for reduced nitrogen.

Prunus serotina (taxid: 23207)

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: 0

>sp|O24243|MDL1_PRUDU (R)-mandelonitrile lyase 1 OS=Prunus dulcis GN=MDL1 PE=2 SV=1

 Score =  373 bits (957), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 222/550 (40%), Positives = 308/550 (56%), Gaps = 42/550 (7%)

Query: 21  AEKAPYYTFVKDATSAPLISYYDYIIVGGGTSGCPLAATLSQNATVLLLEKGGSPYENPN 80
           A    Y  FV +AT   L   YDYI++GGGTSGCPLAATLS+   VLLLE+G    E PN
Sbjct: 33  AHDFSYLKFVYNATDTSLEGSYDYIVIGGGTSGCPLAATLSEKYKVLLLERGTIATEYPN 92

Query: 81  ITDTGNFATTLLDPSP-TSPSQQFISEDGVYNARARVLGGGSVINAGFYTRASLRYVREV 139
                 FA  L       +P ++F+SEDG+ N RAR+LGG ++INAG Y RA++ +  + 
Sbjct: 93  TLTADGFAYNLQQQDDGKTPVERFVSEDGIDNVRARILGGTTIINAGVYARANISFYSQT 152

Query: 140 G--WTESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLLEAGVLPYNGFTFDHIYGTKVSG 197
           G  W   LVN +YEWVE  +  +P    WQS + +G LEAG+LP NGF+ DH  GT+++G
Sbjct: 153 GIEWDLDLVNKTYEWVEDAIVVKPNNQSWQSVIGEGFLEAGILPDNGFSLDHEAGTRLTG 212

Query: 198 TIFDEDGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARH 257
           + FD +G RH+A +LL   DP  L V ++A V++I F+ +  +  +A  V + D  G  H
Sbjct: 213 STFDNNGTRHAADELLNKGDPNNLLVAVQASVEKILFS-SNTSNLSAIGVIYTDSDGNSH 271

Query: 258 RACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMN 317
           +A +   G  E+I+SAG IG+PQLL+LSGVGP + L    I VV   P VGQ + +NP N
Sbjct: 272 QAFVR--GNGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNITVVQPNPYVGQFLYNNPRN 329

Query: 318 ALFVPSARPVEVSLVQVVGITRFDSYIETASGLSLAPSWAQGLTRDYSSFLNKTDIPSLV 377
            +      P+E S+V V+GI R D Y  + S L  +       T  +S F          
Sbjct: 330 FINNFPPNPIEASVVTVLGI-RSDYYQVSLSSLPFS-------TPPFSLF---------- 371

Query: 378 TPETVAEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHLRLR-TLDADDNPSVTFNYFQEP 436
            P T         SY         IV ++ GP S G + L  + D    P++ FNY+   
Sbjct: 372 -PTT---------SYPLPNSTFAHIVSQVPGPLSHGSVTLNSSSDVRIAPNIKFNYYSNS 421

Query: 437 EDLVRCVQGMRTIIDVLNSRALSKFRYPDV-SVQELIDLMVNIPTNLRPRHVVGASISLE 495
            DL  CV GM+ + D+L ++AL  ++  DV  +     L V +P N           S E
Sbjct: 422 TDLANCVSGMKKLGDLLRTKALEPYKARDVLGIDGFNYLGVPLPENQT------DDASFE 475

Query: 496 QFCRDTVMTIWHYHGGCQVDRVVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLGR 555
            FC D V + WHYHGG  V +V+D  ++V+G+  LRV+D STF   P ++PQ   +MLGR
Sbjct: 476 TFCLDNVASYWHYHGGSLVGKVLDDSFRVMGIKALRVVDASTFPYEPNSHPQGFYLMLGR 535

Query: 556 YMGLRILQDR 565
           Y+GL+ILQ+R
Sbjct: 536 YVGLQILQER 545

Involved in cyanogenesis, the release of HCN from injured tissues. Catalyzes the stereospecific addition of HCN to a variety of aldehydes in vitro. It is a major seed constituent, and could have the additional role of a storage form for reduced nitrogen.

Prunus dulcis (taxid: 3755)

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: 0

>sp|P52706|MDL1_PRUSE (R)-mandelonitrile lyase 1 OS=Prunus serotina GN=MDL1 PE=1 SV=1

 Score =  371 bits (953), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 221/544 (40%), Positives = 307/544 (56%), Gaps = 41/544 (7%)

Query: 26  YYTFVKDATSAPLISYYDYIIVGGGTSGCPLAATLSQNATVLLLEKGGSPYENPNITDTG 85
           Y  F  DAT   L   YDY+IVGGGTSGCPLAATLS+   VL+LE+G  P   PN+    
Sbjct: 38  YLRFAYDATDLELEGSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSLPTAYPNVLTAD 97

Query: 86  NFATTLL-DPSPTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRA--SLRYVREVGWT 142
            F   L  +    +P ++F+SEDG+ N R RVLGG S+INAG Y RA  S+     V W 
Sbjct: 98  GFVYNLQQEDDGKTPVERFVSEDGIDNVRGRVLGGTSMINAGVYARANTSIYSASGVDWD 157

Query: 143 ESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLLEAGVLPYNGFTFDHIYGTKVSGTIFDE 202
             LVN +YEWVE  +  +P    WQS      LEAGV P +GF+ DH  GT+++G+ FD 
Sbjct: 158 MDLVNKTYEWVEDTIVFKPNYQPWQSVTGTAFLEAGVDPNHGFSLDHEAGTRITGSTFDN 217

Query: 203 DGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLN 262
            G RH+A +LL   +   L V + A V++I F+       TA  V + D  G  HRA + 
Sbjct: 218 KGTRHAADELLNKGNSNNLRVGVHASVEKIIFSNA--PGLTATGVIYRDSNGTPHRAFVR 275

Query: 263 NGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMNALFVP 322
           +  K E+I+SAG IG+PQLL+LSGVGP + L    I VV+  P VGQ + DNP N + + 
Sbjct: 276 S--KGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNPRNFINIL 333

Query: 323 SARPVEVSLVQVVGITRFDSYIETASGLSLAPSWAQGLTRDYSSFLNKTDIPSLVTPETV 382
              P+E ++V V+GI+  D Y  + S L          T    SF   T  P  +   T 
Sbjct: 334 PPNPIEPTIVTVLGISN-DFYQCSFSSLP--------FTTPPFSFFPSTSYP--LPNSTF 382

Query: 383 AEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHLRLR-TLDADDNPSVTFNYFQEPEDLVR 441
           A                     K+ GP S G L L+ + +   +P+V FNY+  P DL  
Sbjct: 383 AH-----------------FASKVAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNPTDLSH 425

Query: 442 CVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLMVNIPTNLRPRHVVGASISLEQFCRDT 501
           CV GM+ I ++L++ AL  ++  D+   E  +++  IP    P+     + + E FCR++
Sbjct: 426 CVSGMKKIGELLSTDALKPYKVEDLPGIEGFNIL-GIPL---PKDQTDDA-AFETFCRES 480

Query: 502 VMTIWHYHGGCQVDRVVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLGRYMGLRI 561
           V + WHYHGGC V +V+D D++V G+D LRV+DGSTF  +P ++PQ   +MLGRY+G++I
Sbjct: 481 VASYWHYHGGCLVGKVLDGDFRVTGIDALRVVDGSTFPYTPASHPQGFYLMLGRYVGIKI 540

Query: 562 LQDR 565
           LQ+R
Sbjct: 541 LQER 544

Involved in cyanogenesis, the release of HCN from injured tissues. Catalyzes the stereospecific addition of HCN to a variety of aldehydes in vitro. It is a major seed constituent, and could have the additional role of a storage form for reduced nitrogen.

Prunus serotina (taxid: 23207)

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: 0

>sp|Q945K2|MDL2_PRUDU (R)-mandelonitrile lyase 2 OS=Prunus dulcis GN=MDL2 PE=1 SV=1

 Score =  367 bits (942), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 218/544 (40%), Positives = 309/544 (56%), Gaps = 41/544 (7%)

Query: 26  YYTFVKDATSAPLISYYDYIIVGGGTSGCPLAATLSQNATVLLLEKGGSPYENPNITDTG 85
           Y +F  DAT   L   YDY+IVGGGTSGCPLAATLS+   VL+LE+G  P   PN+    
Sbjct: 38  YLSFAYDATDLELEGSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSLPTAYPNVLTAD 97

Query: 86  NFATTLL-DPSPTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRA--SLRYVREVGWT 142
            F   L  +    +P ++F+SEDG+ N R RVLGG S+INAG Y RA  S+     V W 
Sbjct: 98  GFVYNLQQEDDGKTPVERFVSEDGIDNVRGRVLGGTSIINAGVYARANTSIYSASGVDWD 157

Query: 143 ESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLLEAGVLPYNGFTFDHIYGTKVSGTIFDE 202
             LVN +YEWVE  + ++P    WQS  +   LEAGV P +GF+ DH  GT+++G+ FD 
Sbjct: 158 MDLVNQTYEWVEDTIVYKPNSQSWQSVTKTAFLEAGVHPNHGFSLDHEEGTRITGSTFDN 217

Query: 203 DGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLN 262
            G RH+A +LL   +   L V + A V++I F+       TA  V + D  G  H+A + 
Sbjct: 218 KGTRHAADELLNKGNSNNLRVGVHASVEKIIFSNA--PGLTATGVIYRDSNGTPHQAFVR 275

Query: 263 NGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMNALFVP 322
           +  K E+I+SAG IG+PQLL+LSGVGP + L    I VV+  P VGQ + DNP N + + 
Sbjct: 276 S--KGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNPRNFINIL 333

Query: 323 SARPVEVSLVQVVGITRFDSYIETASGLSLAPSWAQGLTRDYSSFLNKTDIPSLVTPETV 382
              P+E ++V V+GI+  D Y  + S L          T  +  F      PS   P   
Sbjct: 334 PPNPIEPTIVTVLGISN-DFYQCSFSSLPFT-------TPPFGFF------PSASYPLP- 378

Query: 383 AEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHLRLR-TLDADDNPSVTFNYFQEPEDLVR 441
                      N T        K+ GP S G L L+ + +   +P+V FNY+    DL  
Sbjct: 379 -----------NSTFAH--FASKVAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNLTDLSH 425

Query: 442 CVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLMVNIPTNLRPRHVVGASISLEQFCRDT 501
           CV GM+ I ++L++ AL  ++  D+   E  +++  IP    P+     + + E FCR++
Sbjct: 426 CVSGMKKIGELLSTDALKPYKVEDLPGVEGFNIL-GIPL---PKDQTDDA-AFETFCRES 480

Query: 502 VMTIWHYHGGCQVDRVVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLGRYMGLRI 561
           V + WHYHGGC V +V+D D++V G++ LRV+DGSTF  +P ++PQ   +MLGRY+G++I
Sbjct: 481 VASYWHYHGGCLVGKVLDGDFRVTGINALRVVDGSTFPYTPASHPQGFYLMLGRYVGIKI 540

Query: 562 LQDR 565
           LQ+R
Sbjct: 541 LQER 544

Involved in cyanogenesis, the release of HCN from injured tissues. Catalyzes the stereospecific addition of HCN to a variety of aldehydes in vitro. Has no oxidase activity. The redox properties of the FAD cofactor appear to be unimportant for catalysis.

Prunus dulcis (taxid: 3755)

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: 0

>sp|Q47944|SDH_GLUOY L-sorbose 1-dehydrogenase OS=Gluconobacter oxydans PE=3 SV=1

 Score =  122 bits (307), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 156/565 (27%), Positives = 234/565 (41%), Gaps = 95/565 (16%)

Query: 38  LISYYDYIIVGGGTSGCPLAATLSQNATV-LLLEKGGSPYENPNITDTGNFATTLLDPSP 96
           + S +DYI+VGGG++GC LAA LS+N +V + L + G    +P I     FA     P  
Sbjct: 1   MTSGFDYIVVGGGSAGCVLAARLSENPSVRVCLIEAGRRDTHPLIHMPVGFAKMTTGPHT 60

Query: 97  ----TSPSQQFISEDGVYNARARVLGGGSVINAGFYTRASL----RYVREV--GWTESLV 146
               T P Q+  +   +   + R+LGGGS INA  +TR       R+  E   GW+   V
Sbjct: 61  WDLLTEP-QKHANNRQIPYVQGRILGGGSSINAEVFTRGHPSDFDRWAAEGADGWSFRDV 119

Query: 147 NSSYEWVE------------------KKVAHEPPMLQWQSAVRDGLLEAGVLPYN-GFTF 187
              +   E                    +A   P  +   A      E G LPYN  F  
Sbjct: 120 QKYFIRSEGNAVFSGTWHGTNGPLGVSNLAEPNPTSR---AFVQSCQEMG-LPYNPDFNG 175

Query: 188 DHIYGTKVSGTIFDEDGHRHSAADLLEYADPEK-LTVYLRAVVQRIKFTETGRAKPTAHC 246
               G  +       +    +A   L  A   K LTV  RA+V +I F  T RA    + 
Sbjct: 176 ASQEGAGIYQMTIRNNRRCSTAVGYLRPALGRKNLTVVTRALVLKIVFNGT-RATGVQYI 234

Query: 247 VTFYDHVGARHRACLNNG-GKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQP 305
                         LN      EI+++AGAIG+P+L+MLSGVGPA  LR+ GI VV D P
Sbjct: 235 AN----------GTLNTAEASQEIVVTAGAIGTPKLMMLSGVGPAAHLRENGIPVVQDLP 284

Query: 306 NVGQGMSDN---------PMNALFVPSARPVEVSLVQVVGITRFDSYIETASGLSLAPSW 356
            VG+ + D+           +  F    R +   L   +  T F S    ++ +     W
Sbjct: 285 GVGENLQDHFGVDIVAELKTDESF-DKYRKLHWMLWAGLEYTMFRSGPVASNVVEGGAFW 343

Query: 357 ----AQGLTRDYSSFLNKTDIPSLVTPETVAEAVETVNSYLNGTIRAGVIVEKIMGPRST 412
               + G+      FL +    + VT      +  T+NSY             ++ P+S 
Sbjct: 344 YSDPSSGVPDLQFHFLAEAGAEAGVTSVPKGASGITLNSY-------------VLRPKSR 390

Query: 413 GHLRLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQELI 472
           G +RLR+ D   NP V  N+  +P DL    +G+R   ++ +  +L K       +++  
Sbjct: 391 GTVRLRSADPRVNPMVDPNFLGDPADLETSAEGVRLSYEMFSQPSLEKH------IRKTC 444

Query: 473 DLMVNIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVDR----VVDRDYKVLGVD 528
                 PT    R           + R+   T +H    C++ R    VVD   KV G++
Sbjct: 445 FFSGKQPTMQMYR----------DYAREHGRTSYHPTCTCKMGRDDMSVVDPRLKVHGLE 494

Query: 529 GLRVIDGSTFYNSPGTNPQATCMML 553
           G+R+ D S   +  G+N  A  +M+
Sbjct: 495 GIRICDSSVMPSLLGSNTNAATIMI 519

Gluconobacter oxydans (taxid: 442)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 3

EC: 2

>sp|C3MIE4|BETA_RHISN Choline dehydrogenase OS=Rhizobium sp. (strain NGR234) GN=betA PE=3 SV=1

 Score =  120 bits (302), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 141/556 (25%), Positives = 223/556 (40%), Gaps = 69/556 (12%)

Query: 43  DYIIVGGGTSGCPLAATLSQNA--TVLLLEKGGS---PYENPNITDTGNFATTLLDPSPT 97
           DYII+G G++G  LA  LS+++  +V++LE GG+   P+           +    +    
Sbjct: 4   DYIIIGSGSAGSALAHRLSEDSRNSVIVLEFGGTDIGPFIQMPAALAWPMSMNRYNWGYL 63

Query: 98  SPSQQFISEDGVYNARARVLGGGSVINAGFYTRAS------LRYVREVGWTESLVNSSYE 151
           S  +  ++   +   R +V+GG S IN   Y R           +   GW  + V   ++
Sbjct: 64  SEPEPHLNNRRITAPRGKVIGGSSSINGMVYVRGHAEDFDRWEQLGAKGWAYADVLPYFK 123

Query: 152 WVEKKVAHEP-------PMLQWQSAVRDGLLEAGVL--PYNGFTF-DHIYGTKVSGTIFD 201
            +E     E        P+   +  V++ L  A V      GF   D   G+K  G    
Sbjct: 124 RMEHSHGGEDGWRGTDGPLHVQRGPVKNPLFHAFVEAGKQAGFEMTDDYNGSKQEGFGLM 183

Query: 202 ED----GHRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARH 257
           E     G R SAA        ++  V L     R    E GRA             G R 
Sbjct: 184 EQTTWRGRRWSAASAYLKPALKRPNVQLIRCFARKIVIENGRA------TGVEIERGGRI 237

Query: 258 RACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMN 317
                N    E+I+SA +  SP+LLMLSG+GPA  L+  GI V VD+P VGQ + D+   
Sbjct: 238 EVVKAN---REVIVSASSFNSPKLLMLSGIGPAAHLKDLGIDVKVDRPGVGQNLQDHMEF 294

Query: 318 ALFVPSARPVEVS-----LVQVVGITRFDSYIETASGLSLAPSWAQGLTRDYSSFLNKTD 372
                S +PV +        Q V   +   ++   SGL ++  +        +  + + D
Sbjct: 295 YFQQISTKPVSLYSWLPWFWQGVAGAQ---WLFFKSGLGISNQFEACAFLRSAPGVKQPD 351

Query: 373 IPSLVTPETVAEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHLRLRTLDADDNPSVTFNY 432
           I     P  +    +   +     +  G  + K     S G + LR  D   +P + FNY
Sbjct: 352 IQYHFLPVAIRYDGKAAANTHGFQVHVGYNLSK-----SRGSVTLRASDPKADPVIRFNY 406

Query: 433 FQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLMVNIPTNLRPRHVVGASI 492
              PED  +    +R   ++   +A  ++R P++                +P   V    
Sbjct: 407 MSHPEDWEKFRHCVRLTREIFGQKAFDQYRGPEI----------------QPGERVQTDE 450

Query: 493 SLEQFCRDTVMTIWHYHGGCQVDR------VVDRDYKVLGVDGLRVIDGSTFYNSPGTNP 546
            ++ F R+ + + +H  G C++        VVD + +V+GVDGLRV D S F +    N 
Sbjct: 451 EIDAFLREHLESAYHPCGTCKMGSKDDPMAVVDPETRVIGVDGLRVADSSIFPHVTYGNL 510

Query: 547 QATCMMLGRYMGLRIL 562
            A  +M G      IL
Sbjct: 511 NAPSIMTGEKAADHIL 526

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Rhizobium sp. (strain NGR234) (taxid: 394)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	570
255539591	577	glucose-methanol-choline (gmc) oxidoredu	0.980	0.968	0.683	0.0
359474260	578	PREDICTED: protein HOTHEAD isoform 1 [Vi	0.984	0.970	0.64	0.0
359474262	568	PREDICTED: protein HOTHEAD isoform 2 [Vi	0.975	0.978	0.642	0.0
359490412	560	PREDICTED: protein HOTHEAD-like [Vitis v	0.973	0.991	0.640	0.0
224053991	577	predicted protein [Populus trichocarpa]	0.982	0.970	0.646	0.0
297741131	537	unnamed protein product [Vitis vinifera]	0.933	0.990	0.633	0.0
15242236	586	Glucose-methanol-choline (GMC) oxidoredu	0.991	0.964	0.610	0.0
356575920	575	PREDICTED: protein HOTHEAD-like [Glycine	0.943	0.935	0.638	0.0
297795999	585	glucose-methanol-choline oxidoreductase	0.989	0.964	0.607	0.0
356514078	581	PREDICTED: protein HOTHEAD-like [Glycine	0.982	0.963	0.609	0.0

>gi|255539591|ref|XP_002510860.1| glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis] gi|223549975|gb|EEF51462.1| glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis]

 Score =  802 bits (2072), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/566 (68%), Positives = 455/566 (80%), Gaps = 7/566 (1%)

Query: 6   WRFAVII----FLFHGFCFAEKAPYYTFVKDATSAPLISYYDYIIVGGGTSGCPLAATLS 61
           W++  I+    F+ HG  ++EKAP YTFV  ATSAP I  YDYII+GGGTSGCPLAATLS
Sbjct: 6   WKYIGIVLAWTFMLHGISYSEKAPSYTFVNKATSAPRILQYDYIIIGGGTSGCPLAATLS 65

Query: 62  QNATVLLLEKGGSPYENPNITDTGNFATTLLDPSPTSPSQQFISEDGVYNARARVLGGGS 121
           ++A VL+LE+GGSPY NPNITD GNF  +L D SP SPSQQFISEDGVYN RARVLGGGS
Sbjct: 66  KHAKVLVLERGGSPYGNPNITDIGNFVASLSDTSPYSPSQQFISEDGVYNTRARVLGGGS 125

Query: 122 VINAGFYTRASLRYVREVGWTESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLLEAGVLP 181
            +NAGF+TRAS+ YV++ GW E LVNSSY WVEKKVA  P MLQWQSAVRDGL+EAG+LP
Sbjct: 126 ALNAGFFTRASVDYVKQAGWKEKLVNSSYAWVEKKVAFRPQMLQWQSAVRDGLIEAGLLP 185

Query: 182 YNGFTFDHIYGTKVSGTIFDEDGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGR-- 239
            NGFT+DH++GTKV G+IFD DGHRH+AADLLEYADP  +TVYL A V +I FT+ GR  
Sbjct: 186 DNGFTYDHVHGTKVGGSIFDRDGHRHTAADLLEYADPRNITVYLHATVVKILFTQRGRPW 245

Query: 240 AKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIR 299
            +P A+ V F D +G RH A LN   KNEIILSAGA+GSPQLLMLSG+GP   LR  GI 
Sbjct: 246 PRPRAYGVVFEDILGFRHTAFLNRNAKNEIILSAGALGSPQLLMLSGIGPGYHLRAHGIP 305

Query: 300 VVVDQPNVGQGMSDNPMNALFVPSARPVEVSLVQVVGITRFDSYIETASGLSLAPSWAQG 359
           +V+DQP VG+GM+DNPMN +F+PS  PVEVSL+QV GITRF SYIE+ASGL+ A +WA+ 
Sbjct: 306 IVLDQPMVGEGMADNPMNLIFIPSPLPVEVSLIQVAGITRFGSYIESASGLTYAYAWARR 365

Query: 360 LTRDYSSFLNKTDIPSLVTPETVAEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHLRLRT 419
             R+Y    N+T  P+++TP  +A+AVETVNS +N T+R GVI+EK+MGP STG L+LRT
Sbjct: 366 FIREYEQSSNQTGEPNMLTPAAMAKAVETVNSLVNATLRGGVILEKVMGPLSTGDLKLRT 425

Query: 420 LDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLMVNIP 479
            + +DNPSV FNYF+EPEDL  CV+GM+TIIDV+NS A SKFRY  V VQ LI LM N+P
Sbjct: 426 TNPNDNPSVKFNYFKEPEDLRTCVEGMKTIIDVINSNAFSKFRYRHVPVQALISLMANLP 485

Query: 480 TNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVDRVVDRDYKVLGVDGLRVIDGSTFY 539
            NLRPRHV  A ISLE+FC DTVMTIWHYHGGCQV +VVDRDY+V+GVDG+RVIDGSTF 
Sbjct: 486 VNLRPRHVTTA-ISLERFCVDTVMTIWHYHGGCQVGKVVDRDYRVIGVDGIRVIDGSTFL 544

Query: 540 NSPGTNPQATCMMLGRYMGLRILQDR 565
            SPGTNPQAT MMLGRYMG RIL+ R
Sbjct: 545 RSPGTNPQATVMMLGRYMGKRILRAR 570

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474260|ref|XP_002282510.2| PREDICTED: protein HOTHEAD isoform 1 [Vitis vinifera] gi|297742610|emb|CBI34759.3| unnamed protein product [Vitis vinifera]

 Score =  749 bits (1933), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/575 (64%), Positives = 435/575 (75%), Gaps = 14/575 (2%)

Query: 1   MGLQFWRF-----AVIIFLFHGFCFAEKAPYYTFVKDATSAPLISYYDYIIVGGGTSGCP 55
           MG+  WRF     A ++  FHGFC +EKAP Y+F+  ATSAP ISYYDYIIVGGGT+GCP
Sbjct: 1   MGVGLWRFILAAFAGVLVFFHGFCSSEKAPNYSFMHQATSAPAISYYDYIIVGGGTAGCP 60

Query: 56  LAATLSQNATVLLLEKGGSPYENPNITDTGNFATTLLDPSPTSPSQQFISEDGVYNARAR 115
           LAATLSQN +VLLLE+GG+PY NPNIT+ G+F     D SPTSPSQ+F+SEDGV NARAR
Sbjct: 61  LAATLSQNYSVLLLERGGAPYGNPNITNLGSFGAPFSDFSPTSPSQRFVSEDGVINARAR 120

Query: 116 VLGGGSVINAGFYTRASLRYVREVGWTESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLL 175
           VLGGGS +NAGFYTRA   YV EVGW   +V  SYEWVEK VA +PPM QWQSAVRDGLL
Sbjct: 121 VLGGGSCLNAGFYTRAGPDYVEEVGWDSGMVKESYEWVEKVVAFKPPMRQWQSAVRDGLL 180

Query: 176 EAGVLPYNGFTFDHIYGTKVSGTIFDEDGHRHSAADLLEYADPEKLTVYLRAVVQRIKFT 235
           E GVLPYNGFT+DHIYGTK+ GTIFD DGHRH+AADLL+YA+P  LTV L A V +I F 
Sbjct: 181 EVGVLPYNGFTYDHIYGTKIGGTIFDPDGHRHTAADLLQYANPTGLTVLLHATVHKITFR 240

Query: 236 ETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRK 295
             G+ +P AH V F D +G +H+A L    KNEII+S+GA+GSPQLLMLSGVGPA +++ 
Sbjct: 241 RRGKVRPVAHGVIFRDVLGKKHKAYLKRDSKNEIIVSSGALGSPQLLMLSGVGPAQQIKA 300

Query: 296 RGIRVVVDQPNVGQGMSDNPMNALFVPSARPVEVSLVQVVGITRFDSYIETASGLSLAPS 355
             I +V+D P VGQ MSDNPMNA+F+PS  PVEVSL+QVVGIT   +YIE ASG + A  
Sbjct: 301 HNISLVLDLPMVGQRMSDNPMNAIFIPSPLPVEVSLIQVVGITHSGTYIEAASGENFA-- 358

Query: 356 WAQGLTRDYSSFLNK-----TDIPSLVTPETVAEAVETVNSYLNGTIRAGVIVEKIMGPR 410
            A G  RD+  F  K     T  P   TPE +A+A+++++       R G I+EKIMGP 
Sbjct: 359 -ASGPQRDFGMFSPKIGQLATVPPKQRTPEAIAKAIDSMSKLDETAFRGGFILEKIMGPI 417

Query: 411 STGHLRLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQE 470
           STGHL L++ + +DNPSVTFNYF+EPEDL RCV GM+ I  ++ S+A S+F+Y  +SV  
Sbjct: 418 STGHLELQSRNPNDNPSVTFNYFKEPEDLQRCVNGMQIIEKIIESKAFSQFKYDYLSVPA 477

Query: 471 LIDLMVNIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVDRVVDRDYKVLGVDGL 530
           LI++ +N P NL PRH   AS SLEQFC+DTVMTIWHYHGGCQV  VVD DYKVLGVD L
Sbjct: 478 LINMTLNFPVNLVPRH-DNASTSLEQFCKDTVMTIWHYHGGCQVGSVVDHDYKVLGVDAL 536

Query: 531 RVIDGSTFYNSPGTNPQATCMMLGRYMGLRILQDR 565
           RVIDGSTF  SPGTNPQAT MMLGRYMGLRIL +R
Sbjct: 537 RVIDGSTFNASPGTNPQATVMMLGRYMGLRILSER 571

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474262|ref|XP_003631426.1| PREDICTED: protein HOTHEAD isoform 2 [Vitis vinifera]

 Score =  748 bits (1932), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/570 (64%), Positives = 433/570 (75%), Gaps = 14/570 (2%)

Query: 1   MGLQFWRF-----AVIIFLFHGFCFAEKAPYYTFVKDATSAPLISYYDYIIVGGGTSGCP 55
           MG+  WRF     A ++  FHGFC +EKAP Y+F+  ATSAP ISYYDYIIVGGGT+GCP
Sbjct: 1   MGVGLWRFILAAFAGVLVFFHGFCSSEKAPNYSFMHQATSAPAISYYDYIIVGGGTAGCP 60

Query: 56  LAATLSQNATVLLLEKGGSPYENPNITDTGNFATTLLDPSPTSPSQQFISEDGVYNARAR 115
           LAATLSQN +VLLLE+GG+PY NPNIT+ G+F     D SPTSPSQ+F+SEDGV NARAR
Sbjct: 61  LAATLSQNYSVLLLERGGAPYGNPNITNLGSFGAPFSDFSPTSPSQRFVSEDGVINARAR 120

Query: 116 VLGGGSVINAGFYTRASLRYVREVGWTESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLL 175
           VLGGGS +NAGFYTRA   YV EVGW   +V  SYEWVEK VA +PPM QWQSAVRDGLL
Sbjct: 121 VLGGGSCLNAGFYTRAGPDYVEEVGWDSGMVKESYEWVEKVVAFKPPMRQWQSAVRDGLL 180

Query: 176 EAGVLPYNGFTFDHIYGTKVSGTIFDEDGHRHSAADLLEYADPEKLTVYLRAVVQRIKFT 235
           E GVLPYNGFT+DHIYGTK+ GTIFD DGHRH+AADLL+YA+P  LTV L A V +I F 
Sbjct: 181 EVGVLPYNGFTYDHIYGTKIGGTIFDPDGHRHTAADLLQYANPTGLTVLLHATVHKITFR 240

Query: 236 ETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRK 295
             G+ +P AH V F D +G +H+A L    KNEII+S+GA+GSPQLLMLSGVGPA +++ 
Sbjct: 241 RRGKVRPVAHGVIFRDVLGKKHKAYLKRDSKNEIIVSSGALGSPQLLMLSGVGPAQQIKA 300

Query: 296 RGIRVVVDQPNVGQGMSDNPMNALFVPSARPVEVSLVQVVGITRFDSYIETASGLSLAPS 355
             I +V+D P VGQ MSDNPMNA+F+PS  PVEVSL+QVVGIT   +YIE ASG + A  
Sbjct: 301 HNISLVLDLPMVGQRMSDNPMNAIFIPSPLPVEVSLIQVVGITHSGTYIEAASGENFA-- 358

Query: 356 WAQGLTRDYSSFLNKTDIPSLVTPETVAEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHL 415
            A G  RD+  F      P   TPE +A+A+++++       R G I+EKIMGP STGHL
Sbjct: 359 -ASGPQRDFGMF-----SPKQRTPEAIAKAIDSMSKLDETAFRGGFILEKIMGPISTGHL 412

Query: 416 RLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLM 475
            L++ + +DNPSVTFNYF+EPEDL RCV GM+ I  ++ S+A S+F+Y  +SV  LI++ 
Sbjct: 413 ELQSRNPNDNPSVTFNYFKEPEDLQRCVNGMQIIEKIIESKAFSQFKYDYLSVPALINMT 472

Query: 476 VNIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVDRVVDRDYKVLGVDGLRVIDG 535
           +N P NL PRH   AS SLEQFC+DTVMTIWHYHGGCQV  VVD DYKVLGVD LRVIDG
Sbjct: 473 LNFPVNLVPRH-DNASTSLEQFCKDTVMTIWHYHGGCQVGSVVDHDYKVLGVDALRVIDG 531

Query: 536 STFYNSPGTNPQATCMMLGRYMGLRILQDR 565
           STF  SPGTNPQAT MMLGRYMGLRIL +R
Sbjct: 532 STFNASPGTNPQATVMMLGRYMGLRILSER 561

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490412|ref|XP_002267848.2| PREDICTED: protein HOTHEAD-like [Vitis vinifera]

 Score =  748 bits (1931), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/570 (64%), Positives = 437/570 (76%), Gaps = 15/570 (2%)

Query: 1   MGLQFWR-----FAVIIFLFHGFCFAEKAPYYTFVKDATSAPLISYYDYIIVGGGTSGCP 55
           MGL++WR      A ++  FHGFC++EKAP Y+F+++A  AP   YYDYII+GGGTSGC 
Sbjct: 1   MGLRWWRNFGAALAGVLLFFHGFCYSEKAPNYSFLQEAKQAPPNLYYDYIIIGGGTSGCA 60

Query: 56  LAATLSQNATVLLLEKGGSPYENPNITDTGNFATTLLDPSPTSPSQQFISEDGVYNARAR 115
           LAATLSQNATVL+LE+GGSPY NP I +  +F   +LD SP SPSQ FISEDGV+N RAR
Sbjct: 61  LAATLSQNATVLVLERGGSPYGNPKIRNLDSFFANILDNSPLSPSQSFISEDGVFNTRAR 120

Query: 116 VLGGGSVINAGFYTRASLRYVREVGWTESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLL 175
           VLGGGS +NAGFY+RAS  +V+  GW E LV  SYEWVEKKV  +PPMLQWQSAVRDGLL
Sbjct: 121 VLGGGSALNAGFYSRASAGFVKSSGWDERLVKESYEWVEKKVVFKPPMLQWQSAVRDGLL 180

Query: 176 EAGVLPYNGFTFDHIYGTKVSGTIFDEDGHRHSAADLLEYADPEKLTVYLRAVVQRIKFT 235
           EAGVLPYNGF+++H+YGTKV GTIFD   HRH+AADLLEYA+P+ + V L A V++I+F 
Sbjct: 181 EAGVLPYNGFSYEHLYGTKVGGTIFDHQDHRHTAADLLEYANPKNIVVLLHATVEKIEFR 240

Query: 236 ETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRK 295
             G +KP A  V F D VG RH A   +  K+EIILSAGAIGSPQLLMLSG+GP + L+ 
Sbjct: 241 LHGESKPIASGVIFRDEVGVRHNAYRRD-SKSEIILSAGAIGSPQLLMLSGIGPESHLKA 299

Query: 296 RGIRVVVDQPNVGQGMSDNPMNALFVPSARPVEVSLVQVVGITRFDSYIETASGLSLAPS 355
            GI V+++QP VGQGM+DNPMNAL +PS RPVE SL+QVVGIT F SYIE ASG  +  S
Sbjct: 300 HGIPVILEQPMVGQGMADNPMNALPIPSPRPVENSLIQVVGITTFGSYIEAASGSDIIRS 359

Query: 356 WAQGLTRDYSSFLNKTDIPSLVTPETVAEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHL 415
           W     R      N +       P+   +A + +N+ +  T+R G+I+EKI GP STGHL
Sbjct: 360 W---FHRPPEQLSNAS-----TNPKGTEKAHKAMNTMMKATVRGGIILEKIKGPISTGHL 411

Query: 416 RLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLM 475
           +LRT + +DNP VTFNYF+EPEDL RCV+GMRTII V+NS+A SKFR+P + VQ LID+M
Sbjct: 412 KLRTTNPEDNPYVTFNYFEEPEDLQRCVEGMRTIIKVINSKAFSKFRFPHIPVQLLIDMM 471

Query: 476 VNIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVDRVVDRDYKVLGVDGLRVIDG 535
           V  P NLRPRH VGASI LEQFC DTVMTIWHYHGGC V RVV+ DYKV+GVDGLR+IDG
Sbjct: 472 VYSPVNLRPRH-VGASIFLEQFCIDTVMTIWHYHGGCHVGRVVEPDYKVIGVDGLRIIDG 530

Query: 536 STFYNSPGTNPQATCMMLGRYMGLRILQDR 565
           STF +SPGTNPQAT MMLGRYMG +IL +R
Sbjct: 531 STFNHSPGTNPQATVMMLGRYMGEKILGER 560

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053991|ref|XP_002298074.1| predicted protein [Populus trichocarpa] gi|222845332|gb|EEE82879.1| predicted protein [Populus trichocarpa]

 Score =  736 bits (1901), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/574 (64%), Positives = 431/574 (75%), Gaps = 14/574 (2%)

Query: 1   MGLQFWRFA----VIIFLFHGFCFAEKAPYYTFVKDATSAPLISYYDYIIVGGGTSGCPL 56
           M L + RF     + I  FHGFC  ++APYY+F+ +ATSAP ISYYDYIIVGGGT+GCPL
Sbjct: 1   MALGWCRFFGACFIGILFFHGFCACDRAPYYSFMLNATSAPTISYYDYIIVGGGTAGCPL 60

Query: 57  AATLSQNATVLLLEKGGSPYENPNITDTGNFATTLLDPSPTSPSQQFISEDGVYNARARV 116
           AATLSQNA+VLLLE+GGSPY NPNIT+   F   L DPSPTSPSQ+FISEDGV NARARV
Sbjct: 61  AATLSQNASVLLLERGGSPYGNPNITNLAKFGAALSDPSPTSPSQRFISEDGVINARARV 120

Query: 117 LGGGSVINAGFYTRASLRYVREVGWTESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLLE 176
           LGGGS +NAGFYTRAS  Y+R  GW   L N SY+WVE++VA EP M  WQSAVRDGLLE
Sbjct: 121 LGGGSCLNAGFYTRASPEYIRAAGWDGRLANESYQWVERRVAFEPQMGPWQSAVRDGLLE 180

Query: 177 AGVLPYNGFTFDHIYGTKVSGTIFDEDGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTE 236
           AGVLP NGFT+DHI GTKV GTIFD  G+RH+AADLLEYA+P  LTV L A V +I F  
Sbjct: 181 AGVLPNNGFTYDHIKGTKVGGTIFDRAGNRHTAADLLEYANPGGLTVLLHATVYKILFAT 240

Query: 237 TGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKR 296
             R KP AH V + D  GA+HRA L  G KNEII+S+GA+GSPQLLMLSGVGPA +LR  
Sbjct: 241 KARPKPVAHGVVYRDASGAKHRAYLKRGLKNEIIISSGALGSPQLLMLSGVGPAQQLRAH 300

Query: 297 GIRVVVDQPNVGQGMSDNPMNALFVPSARPVEVSLVQVVGITRFDSYIETASGLSLAPSW 356
            I VV+DQP VGQ MSDNPMNA+FVPS  PVEVSL+QVVGIT+F SYIE ASG +   S 
Sbjct: 301 NITVVLDQPMVGQLMSDNPMNAIFVPSPLPVEVSLIQVVGITQFGSYIEAASGENFGGS- 359

Query: 357 AQGLTRDYSSFLNK-----TDIPSLVTPETVAEAVETVNSYLNGTIRAGVIVEKIMGPRS 411
                RDY  F  K     T  P   TPE +A+A+E +N+      + G I+EKIMGP S
Sbjct: 360 ---PQRDYGMFSPKIGQLSTVPPKQRTPEALAKAIELMNNLDQQAFQGGFILEKIMGPIS 416

Query: 412 TGHLRLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQEL 471
           TGHL LRT   +DNPSVTFNYF+EP+DL RCV+G+ TI  V++SR  SKFR+  +SV +L
Sbjct: 417 TGHLELRTRHPEDNPSVTFNYFKEPQDLQRCVEGISTIEKVIDSRPFSKFRFDYLSVPQL 476

Query: 472 IDLMVNIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVDRVVDRDYKVLGVDGLR 531
           +++  + P NL PRH   +S SLE FC+DTVMTIWHYHGGCQ   VVD DYKV+GVD LR
Sbjct: 477 LNMTASAPVNLLPRH-YNSSQSLEDFCKDTVMTIWHYHGGCQAGSVVDHDYKVMGVDALR 535

Query: 532 VIDGSTFYNSPGTNPQATCMMLGRYMGLRILQDR 565
           VIDGSTF  SPGTNPQAT MMLGRYMG+ IL++R
Sbjct: 536 VIDGSTFNVSPGTNPQATVMMLGRYMGVNILKER 569

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741131|emb|CBI31862.3| unnamed protein product [Vitis vinifera]

 Score =  736 bits (1899), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/570 (63%), Positives = 429/570 (75%), Gaps = 38/570 (6%)

Query: 1   MGLQFWR-----FAVIIFLFHGFCFAEKAPYYTFVKDATSAPLISYYDYIIVGGGTSGCP 55
           MGL++WR      A ++  FHGFC++EKAP Y+F+++A  AP   YYDYII+GGGTSGC 
Sbjct: 1   MGLRWWRNFGAALAGVLLFFHGFCYSEKAPNYSFLQEAKQAPPNLYYDYIIIGGGTSGCA 60

Query: 56  LAATLSQNATVLLLEKGGSPYENPNITDTGNFATTLLDPSPTSPSQQFISEDGVYNARAR 115
           LAATLSQNATVL+LE+GGSPY NP I +  +F   +LD SP SPSQ FISEDGV+N RAR
Sbjct: 61  LAATLSQNATVLVLERGGSPYGNPKIRNLDSFFANILDNSPLSPSQSFISEDGVFNTRAR 120

Query: 116 VLGGGSVINAGFYTRASLRYVREVGWTESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLL 175
           VLGGGS +NAGFY+RAS  +V+  GW E LV  SYEWVEKKV  +PPMLQWQSAVRDGLL
Sbjct: 121 VLGGGSALNAGFYSRASAGFVKSSGWDERLVKESYEWVEKKVVFKPPMLQWQSAVRDGLL 180

Query: 176 EAGVLPYNGFTFDHIYGTKVSGTIFDEDGHRHSAADLLEYADPEKLTVYLRAVVQRIKFT 235
           EAGVLPYNGF+++H+YGTKV GTIFD   HRH+AADLLEYA+P+ + V L A V++I+F 
Sbjct: 181 EAGVLPYNGFSYEHLYGTKVGGTIFDHQDHRHTAADLLEYANPKNIVVLLHATVEKIEFR 240

Query: 236 ETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRK 295
             G +KP A  V F D VG RH A   +  K+EIILSAGAIGSPQLLMLSG+GP + L+ 
Sbjct: 241 LHGESKPIASGVIFRDEVGVRHNAYRRD-SKSEIILSAGAIGSPQLLMLSGIGPESHLKA 299

Query: 296 RGIRVVVDQPNVGQGMSDNPMNALFVPSARPVEVSLVQVVGITRFDSYIETASGLSLAPS 355
            GI V+++QP VGQGM+DNPMNAL +PS RPVE SL+QVVGIT F SYIE ASG  + P 
Sbjct: 300 HGIPVILEQPMVGQGMADNPMNALPIPSPRPVENSLIQVVGITTFGSYIEAASGSDIIPH 359

Query: 356 WAQGLTRDYSSFLNKTDIPSLVTPETVAEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHL 415
            A                               +N+ +  T+R G+I+EKI GP STGHL
Sbjct: 360 KA-------------------------------MNTMMKATVRGGIILEKIKGPISTGHL 388

Query: 416 RLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLM 475
           +LRT + +DNP VTFNYF+EPEDL RCV+GMRTII V+NS+A SKFR+P + VQ LID+M
Sbjct: 389 KLRTTNPEDNPYVTFNYFEEPEDLQRCVEGMRTIIKVINSKAFSKFRFPHIPVQLLIDMM 448

Query: 476 VNIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVDRVVDRDYKVLGVDGLRVIDG 535
           V  P NLRPRH VGASI LEQFC DTVMTIWHYHGGC V RVV+ DYKV+GVDGLR+IDG
Sbjct: 449 VYSPVNLRPRH-VGASIFLEQFCIDTVMTIWHYHGGCHVGRVVEPDYKVIGVDGLRIIDG 507

Query: 536 STFYNSPGTNPQATCMMLGRYMGLRILQDR 565
           STF +SPGTNPQAT MMLGRYMG +IL +R
Sbjct: 508 STFNHSPGTNPQATVMMLGRYMGEKILGER 537

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15242236|ref|NP_200008.1| Glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] gi|14194161|gb|AAK56275.1|AF367287_1 AT5g51950/MSG15_3 [Arabidopsis thaliana] gi|30102488|gb|AAP21162.1| At5g51950/MSG15_3 [Arabidopsis thaliana] gi|332008766|gb|AED96149.1| Glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana]

 Score =  728 bits (1880), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/578 (61%), Positives = 435/578 (75%), Gaps = 13/578 (2%)

Query: 1   MGLQ----FWRFAVIIFLFHGFCFAEKAPYYTFVKDATSAPLISYYDYIIVGGGTSGCPL 56
           MGLQ    F +  +I ++FH  C  +KA YY+F+KDAT AP+ + +DYII+GGGTSGC L
Sbjct: 1   MGLQILWLFRKIFIITYIFHASCSPDKAGYYSFMKDATLAPMFARFDYIIIGGGTSGCAL 60

Query: 57  AATLSQNATVLLLEKGGSPYENPNITDTGNFATTLLDPSPTSPSQQFISEDGVYNARARV 116
           AATLSQNA+VL+LE+GG+PY+NP  TD  NFATTL + SP S SQ FISEDGVYN RARV
Sbjct: 61  AATLSQNASVLVLERGGAPYDNPTATDIENFATTLSNTSPKSWSQLFISEDGVYNTRARV 120

Query: 117 LGGGSVINAGFYTRASLRYVREVGWTESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLLE 176
           LGGGSV+NAGFYTRA   YV+E  W    V ++YEWVEKKVA +PP+L WQ+A +DGLLE
Sbjct: 121 LGGGSVLNAGFYTRAGDEYVKETEWKTDEVEAAYEWVEKKVAFQPPVLGWQTAFKDGLLE 180

Query: 177 AGVLPYNGFTFDHIYGTKVSGTIFDEDGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTE 236
           AG  PYNGFT+DHIYGTK+ GTIFD  GHRH+AADLLEYA+P  + VYL A V +I FT 
Sbjct: 181 AGEFPYNGFTYDHIYGTKIGGTIFDRAGHRHTAADLLEYANPGNIVVYLHASVHKILFTT 240

Query: 237 TGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKR 296
            GR +P A+ V F D  G  H+A L     NE+ILSAGAIGSPQLLMLSG+GPA  L   
Sbjct: 241 KGRPRPKAYGVIFQDANGVLHKAELEKNSMNEVILSAGAIGSPQLLMLSGIGPAAHLAAH 300

Query: 297 GIR-VVVDQPNVGQGMSDNPMNALFVPSARPVEVSLVQVVGITRFDSYIETASGLSLAPS 355
           GI+ +V+D P VGQGM DNPMNA+F+PS  PVEVSL+QVVGIT+F+SYIE ASG+  + S
Sbjct: 301 GIKPLVLDHPMVGQGMGDNPMNAIFIPSPTPVEVSLIQVVGITKFESYIEGASGVIFSYS 360

Query: 356 WAQGLTRDYSSFLNKTD-------IPSLVTPETVAEAVETVNSYLNGTIRAGVIVEKIMG 408
           W +       ++LN+             ++ +++ +    +N  LN T RAG+I++KI G
Sbjct: 361 WTRRFFDGVLNYLNEMQTSRTTSTTSPTLSTQSITDFFNPINPLLNATTRAGLILQKIAG 420

Query: 409 PRSTGHLRLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSV 468
           P S GHL LR  + DDNPSV FNY+QEPEDL  CV+G+ TII V+NS+A SKF+YPD ++
Sbjct: 421 PISRGHLELRNTNPDDNPSVRFNYYQEPEDLQICVEGINTIIKVINSKAFSKFKYPDATI 480

Query: 469 QELIDLMVNIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVDRVVDRDYKVLGVD 528
             L+DLM+++PTNLRPRH+  +  +L QFC DTVMTIWHYHGGCQV RVVD++Y+VLG+D
Sbjct: 481 HGLLDLMLSVPTNLRPRHIT-SMFNLRQFCIDTVMTIWHYHGGCQVGRVVDKNYRVLGID 539

Query: 529 GLRVIDGSTFYNSPGTNPQATCMMLGRYMGLRILQDRD 566
            LRVIDGSTF  SPGTNPQAT MMLGRYMG RILQ+R+
Sbjct: 540 SLRVIDGSTFLKSPGTNPQATVMMLGRYMGQRILQERE 577

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575920|ref|XP_003556084.1| PREDICTED: protein HOTHEAD-like [Glycine max]

 Score =  728 bits (1879), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/550 (63%), Positives = 433/550 (78%), Gaps = 12/550 (2%)

Query: 22  EKAPYYTFVKDATSAPLISYYDYIIVGGGTSGCPLAATLSQNATVLLLEKGGSPYENPNI 81
           +KAP YTF+++A SAP I  YDYI++GGGT GCPLAATLSQ ATVL+LE+GGSPY NP  
Sbjct: 26  DKAPKYTFLREAASAPQILTYDYIVIGGGTCGCPLAATLSQGATVLVLERGGSPYTNPEQ 85

Query: 82  TDTGNFATTLLDPSPTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRASLRYVREVGW 141
            +  NF  +L D SP+S SQ FIS DGV N+RAR LGGGSV+NAGFY+RAS +Y+ + GW
Sbjct: 86  ININNFVNSLADISPSSFSQPFISRDGVLNSRARALGGGSVLNAGFYSRASSKYIVDSGW 145

Query: 142 TESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLLEAGVLPYNGFTFDHIYGTKVSGTIFD 201
            E+L   SY+WVEKKVA EPPMLQWQSAV+DGLLE GVLPYNGFTFDH+YGTKV GTIFD
Sbjct: 146 NETLAKDSYQWVEKKVAFEPPMLQWQSAVKDGLLEVGVLPYNGFTFDHLYGTKVGGTIFD 205

Query: 202 EDGHRHSAADLLEYADPEKLTVYLRAVVQRIKFT-ETGR-----AKPTAHCVTFYDHVGA 255
           ++G+RH+AADLLEYADP++++VYL A VQ+I F   TG+      +  A+ V F D +G 
Sbjct: 206 KEGNRHTAADLLEYADPKRISVYLHATVQKILFKYNTGKDLRIYRRQQAYGVIFKDALGV 265

Query: 256 RHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNP 315
            HRA L+  GK+EIILSAGAIGSPQLLMLSG+GPAN L+  GI+VV+DQP VGQGM+DNP
Sbjct: 266 MHRAYLSTKGKSEIILSAGAIGSPQLLMLSGIGPANHLQAHGIKVVLDQPLVGQGMADNP 325

Query: 316 MNALFVPSARPVEVSLVQVVGITRFDSYIETASGLSLAPSWAQGLTRDYSSFLNKTDIPS 375
           +N L VPS  PVEVSLVQ VGIT+F S+IE ASGLSL  SW++ L   +    N++  PS
Sbjct: 326 LNVLLVPSPVPVEVSLVQTVGITKFGSFIEAASGLSLGHSWSERLQGIFEFVSNQSGQPS 385

Query: 376 LVTPETVAEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHLRLRTLDADDNPSVTFNYFQE 435
           +  P       +T+ S  N  ++ GV++EKI+GPRSTGHL L   + +DNPSVTFNYF++
Sbjct: 386 MFPP-----VADTIRSLANPILKGGVLLEKIIGPRSTGHLELINTNPNDNPSVTFNYFKD 440

Query: 436 PEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLMVNIPTNLRPRHVVGASISLE 495
           PEDL +CV+GMRTIIDV+NS+A SKFRY ++ VQ LIDLM+++P NLRP+H   A+ SLE
Sbjct: 441 PEDLRKCVEGMRTIIDVINSKAFSKFRYHNMPVQSLIDLMLHLPVNLRPKH-ANAAFSLE 499

Query: 496 QFCRDTVMTIWHYHGGCQVDRVVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLGR 555
           Q+C DTV+TIWHYHGGCQ  +VVD +YKV+GV+ LRVIDGSTF+ SPGTNPQAT MMLGR
Sbjct: 500 QYCIDTVLTIWHYHGGCQSGKVVDHNYKVIGVEALRVIDGSTFHRSPGTNPQATVMMLGR 559

Query: 556 YMGLRILQDR 565
           YMG +I++ R
Sbjct: 560 YMGEKIIKKR 569

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297795999|ref|XP_002865884.1| glucose-methanol-choline oxidoreductase family protein [Arabidopsis lyrata subsp. lyrata] gi|297311719|gb|EFH42143.1| glucose-methanol-choline oxidoreductase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  726 bits (1875), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/576 (60%), Positives = 434/576 (75%), Gaps = 12/576 (2%)

Query: 1   MGLQ-FWRFAVII---FLFHGFCFAEKAPYYTFVKDATSAPLISYYDYIIVGGGTSGCPL 56
           MGLQ  W F +I    ++ H  C  +KA YY+F+KDATSAP+ + +DYI++GGGTSGC L
Sbjct: 1   MGLQRLWLFRIIFIVTYISHASCLPDKAGYYSFMKDATSAPMFARFDYIVIGGGTSGCSL 60

Query: 57  AATLSQNATVLLLEKGGSPYENPNITDTGNFATTLLDPSPTSPSQQFISEDGVYNARARV 116
           AATL+QNA+VL+LE+GG+PY+NP  TD  NFATTL + SP S SQ F+SEDGVYN RARV
Sbjct: 61  AATLAQNASVLVLERGGAPYDNPTATDIENFATTLSNTSPNSWSQLFVSEDGVYNTRARV 120

Query: 117 LGGGSVINAGFYTRASLRYVREVGWTESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLLE 176
           LGGGSV+NAGFYTRA   YV+E  W    V ++YEWVEKKVA +PP++ WQ+A +DGLLE
Sbjct: 121 LGGGSVLNAGFYTRAGEEYVKETEWKSDEVEAAYEWVEKKVAFQPPVMGWQTAFKDGLLE 180

Query: 177 AGVLPYNGFTFDHIYGTKVSGTIFDEDGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTE 236
           AG  PYNGFT+DHIYGTK+ GTIFD  GHRH+AADLLEYA+P  + VYL A V +I FT 
Sbjct: 181 AGEFPYNGFTYDHIYGTKIGGTIFDRAGHRHTAADLLEYANPGNIVVYLHASVHKILFTT 240

Query: 237 TGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKR 296
            GR +P A+ V F D  G  H+A L     NE+ILSAGAIGSPQLLMLSG+GPA  L   
Sbjct: 241 KGRPRPKAYGVIFQDANGVIHKAELEKNAMNEVILSAGAIGSPQLLMLSGIGPAAHLTAH 300

Query: 297 GIR-VVVDQPNVGQGMSDNPMNALFVPSARPVEVSLVQVVGITRFDSYIETASGLSLAPS 355
           GI+ VV+D P VGQGM DNPMNA+F+PS  PVEVSL+QVVGIT+F+SYIE ASG+  + S
Sbjct: 301 GIKPVVLDHPMVGQGMGDNPMNAIFIPSPTPVEVSLIQVVGITKFESYIEGASGVIFSYS 360

Query: 356 WAQGLTRDYSSFLNKTDIPSLVTPETVAEAVETV------NSYLNGTIRAGVIVEKIMGP 409
           W +       ++LN+       +  +   + +++      N  LN T RAG+I++KI GP
Sbjct: 361 WTRRFFDGVLNYLNEIQTSRTTSTTSPTLSTQSITDFFKSNPLLNATTRAGLILQKIAGP 420

Query: 410 RSTGHLRLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQ 469
            S GHL LR  + DDNPSV FNY+QEPEDL  CV+G+ TII V+NS+A SKF+YPD ++ 
Sbjct: 421 ISRGHLELRNTNPDDNPSVRFNYYQEPEDLQICVEGINTIIKVINSKAFSKFKYPDATIH 480

Query: 470 ELIDLMVNIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVDRVVDRDYKVLGVDG 529
            L+DLM+++PTNLRPRH+  +  +L+QFC DTVMTIWHYHGGCQV RVVD++Y++LG+D 
Sbjct: 481 GLLDLMLSVPTNLRPRHIT-SMFNLKQFCIDTVMTIWHYHGGCQVGRVVDKNYRILGIDS 539

Query: 530 LRVIDGSTFYNSPGTNPQATCMMLGRYMGLRILQDR 565
           LRVIDGSTF  SPGTNPQAT MMLGRYMG RILQ+R
Sbjct: 540 LRVIDGSTFLKSPGTNPQATVMMLGRYMGQRILQER 575

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514078|ref|XP_003525734.1| PREDICTED: protein HOTHEAD-like [Glycine max]

 Score =  717 bits (1852), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/574 (60%), Positives = 430/574 (74%), Gaps = 14/574 (2%)

Query: 1   MGLQFWRFAVI----IFLFHGFCFAEKAPYYTFVKDATSAPLISYYDYIIVGGGTSGCPL 56
           MG+ +W+  V     I      C ++K P YTF+ +AT+AP +SYYDYI++GGGT+GCPL
Sbjct: 1   MGVWWWKLFVAALAGILFSTQHCASQKVPNYTFMHNATTAPDVSYYDYIVIGGGTAGCPL 60

Query: 57  AATLSQNATVLLLEKGGSPYENPNITDTGNFATTLLDPSPTSPSQQFISEDGVYNARARV 116
           AATLSQN +VLLLE+GGSPY NPNI+D   F   L D SPTSP+Q+FISEDGV N+RARV
Sbjct: 61  AATLSQNYSVLLLERGGSPYGNPNISDLAAFGAALSDTSPTSPAQRFISEDGVINSRARV 120

Query: 117 LGGGSVINAGFYTRASLRYVREVGWTESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLLE 176
           LGGGS +NAGFYTRAS +YVRE GW   +VN SYEWVEK VA EP + QWQS+VRDGL+E
Sbjct: 121 LGGGSCLNAGFYTRASPQYVREAGWDGRVVNESYEWVEKIVAFEPQLKQWQSSVRDGLIE 180

Query: 177 AGVLPYNGFTFDHIYGTKVSGTIFDEDGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTE 236
            GV+P NGFT+DHI GTKV GTIFD++G RH+AADLL+YA P  +T+ L A V RI F  
Sbjct: 181 IGVVPNNGFTYDHIDGTKVGGTIFDQNGFRHTAADLLQYAKPTGITLLLDATVHRILFRV 240

Query: 237 TGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKR 296
             R+KP AH V F D +G RH+A L    +NEII+SAGA+GSPQLLMLSG+GP   L+  
Sbjct: 241 KDRSKPMAHGVVFRDSLGRRHKAYLKPDPRNEIIVSAGALGSPQLLMLSGIGPEEHLKAH 300

Query: 297 GIRVVVDQPNVGQGMSDNPMNALFVPSARPVEVSLVQVVGITRFDSYIETASGLSLAPSW 356
            IR+ +DQP VGQGMSDNPMNA+FVPS  PVE+SL++VVGIT F +YIE ASG     ++
Sbjct: 301 NIRITLDQPLVGQGMSDNPMNAIFVPSPVPVEISLIEVVGITTFGTYIEAASG----ENF 356

Query: 357 AQGLTRDYSSFLNK-----TDIPSLVTPETVAEAVETVNSYLNGTIRAGVIVEKIMGPRS 411
           A G  +DY  F  K     T  P   TPE +A+A+E + +      R G I+EKIMGP S
Sbjct: 357 AGGSPKDYGMFSPKIGQLSTVPPKQRTPEALAKAIEVMETLDQAAFRGGFILEKIMGPIS 416

Query: 412 TGHLRLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQEL 471
           +GHL LR+ D +DNPSVTFNYFQ+P DL RCVQG+ T+  ++ S+A S FRYP++ V  L
Sbjct: 417 SGHLELRSRDPNDNPSVTFNYFQDPRDLQRCVQGLSTVEKIIESKAFSPFRYPNMPVPVL 476

Query: 472 IDLMVNIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVDRVVDRDYKVLGVDGLR 531
           +++  + P NL P+H   +S+SLEQ+C+DTVMTIWHYHGGCQV +VVDRDYKVLGVD LR
Sbjct: 477 LNMTASAPVNLLPKH-TNSSLSLEQYCKDTVMTIWHYHGGCQVAKVVDRDYKVLGVDALR 535

Query: 532 VIDGSTFYNSPGTNPQATCMMLGRYMGLRILQDR 565
           VIDGSTF  SPGTNPQAT MMLGRYMG++IL +R
Sbjct: 536 VIDGSTFNYSPGTNPQATVMMLGRYMGVKILSER 569

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	570
TAIR|locus:2173068	586	AT5G51950 [Arabidopsis thalian	0.989	0.962	0.618	7.5e-192
TAIR|locus:2078441	577	AT3G56060 [Arabidopsis thalian	0.982	0.970	0.590	2.4e-179
TAIR|locus:2034705	572	AT1G12570 [Arabidopsis thalian	0.973	0.970	0.584	1.7e-171
TAIR|locus:2173053	582	AT5G51930 [Arabidopsis thalian	0.943	0.924	0.571	1e-164
TAIR|locus:2032627	594	HTH "HOTHEAD" [Arabidopsis tha	0.950	0.912	0.502	1.8e-142
TAIR|locus:2032642	552	AT1G73050 [Arabidopsis thalian	0.619	0.639	0.471	6.6e-121
TAIR|locus:505006121	503	AT1G14185 [Arabidopsis thalian	0.580	0.658	0.434	2.4e-98
UNIPROTKB|Q945K2	563	MDL2 "(R)-mandelonitrile lyase	0.549	0.555	0.445	1.1e-97
TAIR|locus:2035830	501	AT1G14190 [Arabidopsis thalian	0.512	0.582	0.453	1.6e-97
ASPGD|ASPL0000037024	611	AN3229 [Emericella nidulans (t	0.633	0.590	0.276	2.1e-29

TAIR|locus:2173068 AT5G51950 [Arabidopsis thaliana (taxid:3702)]

 Score = 1859 (659.5 bits), Expect = 7.5e-192, P = 7.5e-192
 Identities = 358/579 (61%), Positives = 438/579 (75%)

Query:     1 MGLQF-WRFA---VIIFLFHGFCFAEKAPYYTFVKDATSAPLISYYDYIIVGGGTSGCPL 56
             MGLQ  W F    +I ++FH  C  +KA YY+F+KDAT AP+ + +DYII+GGGTSGC L
Sbjct:     1 MGLQILWLFRKIFIITYIFHASCSPDKAGYYSFMKDATLAPMFARFDYIIIGGGTSGCAL 60

Query:    57 AATLSQNATVLLLEKGGSPYENPNITDTGNFATTLLDPSPTSPSQQFISEDGVYNARARV 116
             AATLSQNA+VL+LE+GG+PY+NP  TD  NFATTL + SP S SQ FISEDGVYN RARV
Sbjct:    61 AATLSQNASVLVLERGGAPYDNPTATDIENFATTLSNTSPKSWSQLFISEDGVYNTRARV 120

Query:   117 LGGGSVINAGFYTRASLRYVREVGWTESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLLE 176
             LGGGSV+NAGFYTRA   YV+E  W    V ++YEWVEKKVA +PP+L WQ+A +DGLLE
Sbjct:   121 LGGGSVLNAGFYTRAGDEYVKETEWKTDEVEAAYEWVEKKVAFQPPVLGWQTAFKDGLLE 180

Query:   177 AGVLPYNGFTFDHIYGTKVSGTIFDEDGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTE 236
             AG  PYNGFT+DHIYGTK+ GTIFD  GHRH+AADLLEYA+P  + VYL A V +I FT 
Sbjct:   181 AGEFPYNGFTYDHIYGTKIGGTIFDRAGHRHTAADLLEYANPGNIVVYLHASVHKILFTT 240

Query:   237 TGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKR 296
              GR +P A+ V F D  G  H+A L     NE+ILSAGAIGSPQLLMLSG+GPA  L   
Sbjct:   241 KGRPRPKAYGVIFQDANGVLHKAELEKNSMNEVILSAGAIGSPQLLMLSGIGPAAHLAAH 300

Query:   297 GIR-VVVDQPNVGQGMSDNPMNALFVPSARPVEVSLVQVVGITRFDSYIETASGLSLAPS 355
             GI+ +V+D P VGQGM DNPMNA+F+PS  PVEVSL+QVVGIT+F+SYIE ASG+  + S
Sbjct:   301 GIKPLVLDHPMVGQGMGDNPMNAIFIPSPTPVEVSLIQVVGITKFESYIEGASGVIFSYS 360

Query:   356 WAQGLTRDYSSFLNK--------TDIPSLVTPETVAEAVETVNSYLNGTIRAGVIVEKIM 407
             W +       ++LN+        T  P+L T +++ +    +N  LN T RAG+I++KI 
Sbjct:   361 WTRRFFDGVLNYLNEMQTSRTTSTTSPTLST-QSITDFFNPINPLLNATTRAGLILQKIA 419

Query:   408 GPRSTGHLRLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVS 467
             GP S GHL LR  + DDNPSV FNY+QEPEDL  CV+G+ TII V+NS+A SKF+YPD +
Sbjct:   420 GPISRGHLELRNTNPDDNPSVRFNYYQEPEDLQICVEGINTIIKVINSKAFSKFKYPDAT 479

Query:   468 VQELIDLMVNIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVDRVVDRDYKVLGV 527
             +  L+DLM+++PTNLRPRH+  +  +L QFC DTVMTIWHYHGGCQV RVVD++Y+VLG+
Sbjct:   480 IHGLLDLMLSVPTNLRPRHIT-SMFNLRQFCIDTVMTIWHYHGGCQVGRVVDKNYRVLGI 538

Query:   528 DGLRVIDGSTFYNSPGTNPQATCMMLGRYMGLRILQDRD 566
             D LRVIDGSTF  SPGTNPQAT MMLGRYMG RILQ+R+
Sbjct:   539 DSLRVIDGSTFLKSPGTNPQATVMMLGRYMGQRILQERE 577

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA

GO:0016832 "aldehyde-lyase activity" evidence=ISS

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0048441 "petal development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2078441 AT3G56060 [Arabidopsis thaliana (taxid:3702)]

 Score = 1741 (617.9 bits), Expect = 2.4e-179, P = 2.4e-179
 Identities = 337/571 (59%), Positives = 435/571 (76%)

Query:     4 QFWRFAVI-IFLFHGFCFAEKAPYYTFVKDATSAPLISYYDYIIVGGGTSGCPLAATLSQ 62
             +F++F ++ +F+FH  C++++A  Y F+KDAT AP +S++DYII+GGGT+GC LAATLSQ
Sbjct:     7 RFFQFILVAVFIFHDSCYSDEAGNYRFMKDATLAPKLSHFDYIIIGGGTAGCALAATLSQ 66

Query:    63 NATVLLLEKGGSPYENPNITDTGNFATTLLDPSPTSPSQQFISEDGVYNARARVLGGGSV 122
             NATVL+LE+GGSPY++P  TD GNFA TLL+ +P S SQ FISEDGV+N+RARVLGGG+V
Sbjct:    67 NATVLVLERGGSPYDDPAATDIGNFANTLLNITPNSWSQLFISEDGVFNSRARVLGGGTV 126

Query:   123 INAGFYTRASLRYVREVGWTESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLLEAGVLPY 182
             INAGFY+RA   +V E GW    V ++YEWVEKKV  EPP+ +WQSA RDGLLEAGV PY
Sbjct:   127 INAGFYSRAEEDFVAEAGWERDEVEAAYEWVEKKVVFEPPVNKWQSAFRDGLLEAGVTPY 186

Query:   183 NGFTFDHIYGTKVSGTIFDEDGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKP 242
             NGFT++HI GTK  GTIFD DGHRH+AA+LLEYA+P  + VYL A V +I FT  G  +P
Sbjct:   187 NGFTYEHIVGTKFGGTIFDRDGHRHTAANLLEYANPNMIVVYLHASVHKILFTIKGNQRP 246

Query:   243 TAHCVTFYDHVGARHRACL--NNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIR- 299
              A+ V F D  G  ++A L   +   +E+ILSAGAI SPQLLMLSGVGPA  L    +  
Sbjct:   247 KAYGVIFLDANGVSYKAELATQDSTMSEVILSAGAIASPQLLMLSGVGPAAHLAAYRVNP 306

Query:   300 VVVDQPNVGQGMSDNPMNALFVPSARPVEVSLVQVVGITRFDSYIETASGLSLAPSWAQG 359
             V+VDQP VGQGM DNPMN +F+PS  PVEVSLVQ VGIT+F SYIE  S LSL+ S  + 
Sbjct:   307 VIVDQPMVGQGMGDNPMNPVFIPSPEPVEVSLVQAVGITKFGSYIEGGSALSLSISLTRS 366

Query:   360 LTRDYSSFLNKTDIPSLVTPETVAEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHLRLRT 419
                   + L KT +P+    +++++  ++++  LN T +AGVI++K+ GP S GHL LR 
Sbjct:   367 FFDGVLNLLKKTKLPT----QSISKFFKSLDLTLNVTTKAGVIIQKVNGPLSRGHLELRN 422

Query:   420 LDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLMVNIP 479
              + DDNPSVTFNYF++PEDL +CV+G+ TII V++S+  SK++YP  S + L++L++ +P
Sbjct:   423 TNPDDNPSVTFNYFKDPEDLNKCVEGLSTIIKVIDSKGYSKYKYPLASARGLLNLILALP 482

Query:   480 TNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVDRVVDRDYKVLGVDGLRVIDGSTFY 539
             TNLRPRH+  ++  LEQ+C DTVMTI+HYHGGCQV +VVD +YKVLGVD LR+IDGSTF 
Sbjct:   483 TNLRPRHIT-STFDLEQYCIDTVMTIYHYHGGCQVGKVVDNNYKVLGVDALRIIDGSTFL 541

Query:   540 NSPGTNPQATCMMLGRYMGLRILQDRDRISF 570
              SPGTNPQAT MMLGRYMG +IL  R+R++F
Sbjct:   542 KSPGTNPQATIMMLGRYMGQKIL--RERMAF 570

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA

GO:0016832 "aldehyde-lyase activity" evidence=ISS

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2034705 AT1G12570 [Arabidopsis thaliana (taxid:3702)]

 Score = 1667 (591.9 bits), Expect = 1.7e-171, P = 1.7e-171
 Identities = 331/566 (58%), Positives = 412/566 (72%)

Query:     6 WRFAVIIFLF-HG-FCFAEKAPYYTFVKDATSAPLISYYDYIIVGGGTSGCPLAATLSQN 63
             WR  V + LF H   C ++KAP Y+F++DAT +P  SYYDYII+GGGT+GCPLAATLSQN
Sbjct:     8 WRLFVALSLFLHSPICSSDKAPNYSFMRDATGSPTTSYYDYIIIGGGTAGCPLAATLSQN 67

Query:    64 ATVLLLEKGGSPYENPNITDTGNFATTLLDPSPTSPSQQFISEDGVYNARARVLGGGSVI 123
             A+VLLLE+G SPY NPNIT    F   L D S +SPSQ+F+SEDGV NARARVLGGGS +
Sbjct:    68 ASVLLLERGDSPYNNPNITRLSAFGAALSDLSESSPSQRFVSEDGVINARARVLGGGSAL 127

Query:   124 NAGFYTRASLRYVREVGWTESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLLEAGVLPYN 183
             NAGFYTRA  +YVR +GW  +L N SY+WVE KVA +PPM +WQ+AVRDGLLEAG++P N
Sbjct:   128 NAGFYTRAGTKYVRNMGWDGALANESYQWVEAKVAFQPPMGRWQTAVRDGLLEAGIVPNN 187

Query:   184 GFTFDHIYGTKVSGTIFDEDGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPT 243
             GFT+DHI GTK  GTIFD +G+RH+AADLLEYADP+ +TV L A V RI F   G  KP 
Sbjct:   188 GFTYDHINGTKFGGTIFDRNGNRHTAADLLEYADPKGITVLLHATVHRILFRTRGTTKPI 247

Query:   244 AHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVD 303
             A+ V + D  G  HRA L  G  +EIILSAG +GSPQLLMLSGVGP+ +L+ + I VV+D
Sbjct:   248 ANGVVYRDRTGQAHRAYLKEGALSEIILSAGTLGSPQLLMLSGVGPSAQLQAQNITVVMD 307

Query:   304 QPNVGQGMSDNPMNALFVPSARPVEVSLVQVVGITRFDSYIETASGLSLAPSWAQGLTRD 363
             QP+VGQGM DNPMNA+FVPS  PVEVSL++VVGIT   +Y+E A G +       G +  
Sbjct:   308 QPHVGQGMYDNPMNAVFVPSPVPVEVSLIEVVGITGEGTYVEAAGGENFGGGGG-GSSGS 366

Query:   364 YSSFLNKTDIPSLVTPE-TVAEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHLRLRTLDA 422
              S+     D  ++ +P  T+ E+            + G ++EK+MGP STGHL L+T + 
Sbjct:   367 SST----RDYYAMFSPRATLLESNSMTKLSSAQPFQGGFLLEKVMGPLSTGHLELKTRNP 422

Query:   423 DDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLMVNIPTNL 482
              DNP VTFNYFQ P+DL RCV+G++TI  V+ S+A S+++Y DVS + L++L  + P NL
Sbjct:   423 KDNPIVTFNYFQHPDDLKRCVRGIQTIERVVQSKAFSRYKYADVSFEYLLNLTASTPVNL 482

Query:   483 RP-RHVVGASI--SLEQFCRDTVMTIWHYHGGCQVDRVVDRDYKVLGVDGLRVIDGSTFY 539
             RP R   GAS+  S E+FC+ TV TIWHYHGGC V RVVD DYKV+G+D LRVID ST  
Sbjct:   483 RPPRSGPGASLPPSAEEFCQHTVTTIWHYHGGCVVGRVVDGDYKVIGIDRLRVIDMSTVG 542

Query:   540 NSPGTNPQATCMMLGRYMGLRILQDR 565
               PGTNPQAT MMLGRYMG++IL++R
Sbjct:   543 YCPGTNPQATVMMLGRYMGVKILRER 568

GO:0005576 "extracellular region" evidence=ISM

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA

GO:0016832 "aldehyde-lyase activity" evidence=ISS

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2173053 AT5G51930 [Arabidopsis thaliana (taxid:3702)]

 Score = 1603 (569.3 bits), Expect = 1.0e-164, P = 1.0e-164
 Identities = 314/549 (57%), Positives = 403/549 (73%)

Query:    10 VIIFLFHGFCFAEKAPYYTFVKDATSAPLISYYDYIIVGGGTSGCPLAATLSQNATVLLL 69
             +++++   F F  K    TF+KDAT AP  + +DYII+GGGT+GC LAATLSQNA+VL+L
Sbjct:    42 ILVYISIFFFFLVKLET-TFMKDATLAPKNASFDYIIIGGGTAGCALAATLSQNASVLVL 100

Query:    70 EKGGSPYENPNITDTGNFATTLLDPSPTSPSQQFISEDGVYNARARVLGGGSVINAGFYT 129
             E+GGSPYENP  TD GN   TLL+ +P S SQ FISEDGVYN R RVLGGGSVIN GFY+
Sbjct:   101 ERGGSPYENPTATDMGNSVNTLLNNTPNSWSQLFISEDGVYNTRPRVLGGGSVINGGFYS 160

Query:   130 RASLRYVREVGWTESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLLEAGVLPYNGFTFDH 189
             RA   YV E  W    V ++YEWVEKK+  EP +++WQ A +DGLLEAG  P NGFT+DH
Sbjct:   161 RAGNDYVEEAEWEMEEVEAAYEWVEKKLVFEPQVIEWQKAFKDGLLEAGESPDNGFTYDH 220

Query:   190 IYGTKVSGTIFDEDGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTF 249
             IYGTK+ GTIFD  GHRH+AA+LLEYA+P ++ VYL A V ++ FT        A+ V F
Sbjct:   221 IYGTKIGGTIFDRAGHRHTAANLLEYANPNRIVVYLHASVHKVLFTTE------AYEVLF 274

Query:   250 YDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIR-VVVDQPNVG 308
              D  G  H+A L N   NE+ILSAGA+GSPQLLMLSGVGPA  L   G+  +V+DQP VG
Sbjct:   275 EDANGVFHKANLANKATNEVILSAGALGSPQLLMLSGVGPAVHLEAHGVNPLVLDQPMVG 334

Query:   309 QGMSDNPMNALFVPSARPVEVSLVQVVGITRFDSYIETASGLSLAPSWAQGLTRDYSSFL 368
             QGM+DNPMN + +PS +PVE+SL+Q VGIT+FDSYIE  SGLSL+    +       + L
Sbjct:   335 QGMADNPMNFVAIPSPQPVELSLIQAVGITKFDSYIEGLSGLSLSFDITRRFFDGVLNLL 394

Query:   369 NKTDIPSL--VTPETVAEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHLRLRTLDADDNP 426
             N+T   +   +  +++A  +++ +  L   +  G+I +K+ GP S GH++LR  +  DNP
Sbjct:   395 NETSHTTSRKILTQSIAVLLKSFDVKLEVRMNGGLIFQKVDGPASKGHMKLRNTNPRDNP 454

Query:   427 SVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLMVNIPTNLRPRH 486
             SVTFNY+QEPEDL +CV+G+ TII ++NS+A SK++YP V+ +EL++LM+ +P NLRPRH
Sbjct:   455 SVTFNYYQEPEDLNKCVKGLNTIIRMINSKAFSKYKYPGVTARELLNLMLALPINLRPRH 514

Query:   487 VVGASISLEQFCRDTVMTIWHYHGGCQVDRVVDRDYKVLGVDGLRVIDGSTFYNSPGTNP 546
             V  A  +L+QFC DTV ++WHYHGGCQV +VVD++YKVLG+DGLRVIDGSTF  SPGTNP
Sbjct:   515 VTSA-FNLKQFCIDTVTSVWHYHGGCQVGKVVDKNYKVLGIDGLRVIDGSTFLKSPGTNP 573

Query:   547 QATCMMLGR 555
             QAT MMLGR
Sbjct:   574 QATVMMLGR 582

GO:0005576 "extracellular region" evidence=ISM

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA

GO:0016832 "aldehyde-lyase activity" evidence=ISS

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2032627 HTH "HOTHEAD" [Arabidopsis thaliana (taxid:3702)]

 Score = 1393 (495.4 bits), Expect = 1.8e-142, P = 1.8e-142
 Identities = 280/557 (50%), Positives = 373/557 (66%)

Query:    18 FCFAEKAPYYTFVKDAT--SAPLISYYDYIIVGGGTSGCPLAATLSQNATVLLLEKGGSP 75
             + F +KA  ++    ++  S    S YDYI++GGGT+GCPLAATLSQN +VL+LE+GG P
Sbjct:    37 YTFIDKASTFSSSSSSSFSSNGQDSSYDYIVIGGGTAGCPLAATLSQNFSVLVLERGGVP 96

Query:    76 YENPNITDTGNFATTLLDPSPTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRASLRY 135
             + N N++   NF   L D S +S SQ F+S DGVYNARARVLGGGS INAGFY+RA   +
Sbjct:    97 FTNANVSFLRNFHIGLADISASSASQAFVSTDGVYNARARVLGGGSCINAGFYSRADAAF 156

Query:   136 VREVGWTESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLLEAGVLPYNGFTFDHIYGTKV 195
             V+  GW   LV  SY WVE+++ H+P +  WQ A+RD LLE GV P+NGFT+DH+ GTK+
Sbjct:   157 VKRAGWDPKLVKESYPWVEREIVHQPKLTLWQKALRDSLLEVGVRPFNGFTYDHVSGTKI 216

Query:   196 SGTIFDEDGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGA 255
              GTIFD  G RH+AA+LL YA+P+KL V + A VQ+I F  +G  +P    V F D  G 
Sbjct:   217 GGTIFDRFGRRHTAAELLAYANPQKLRVLIYATVQKIVFDTSG-TRPRVTGVIFKDEKGN 275

Query:   256 RHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNP 315
             +H+A L+N   +E+ILS+GAIGSPQ+LMLSG+GP  EL++  I VV++  +VG+GM+DNP
Sbjct:   276 QHQALLSNRKGSEVILSSGAIGSPQMLMLSGIGPKKELQRLKIPVVLENEHVGKGMADNP 335

Query:   316 MNALFVPSARPVEVSLVQVVGITRFDSYIETASGLSLAPSWAQGLTRDYSSFLNKTDIPS 375
             MN + VPS  P+E SL+Q VGIT+   Y+E ++G   +P   + +   Y    NK ++ S
Sbjct:   336 MNTILVPSKAPIEQSLIQTVGITKMGVYVEASTGFGQSP---ESIHTHYGIMSNKNELFS 392

Query:   376 LVT-----PETVAEAVETVNSY-LNGTIRAGVIVEKIMGPRSTGHLRLRTLDADDNPSVT 429
              +      PE   +A  T N Y L+       I+EK+  P S GHL L   + DDNPSVT
Sbjct:   393 TIPAKQRRPEAT-QAYITRNKYQLHEAFNGSFILEKLAYPISRGHLSLVNTNVDDNPSVT 451

Query:   430 FNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDV-SVQELIDLMVNIPTNLRPRHVV 488
             FNYF+ P DL RCV+ +R +  V+ S     +   D  +V +++ L V    NLRP+ + 
Sbjct:   452 FNYFKHPVDLQRCVEAIRLVSKVVTSNRFLNYTQCDKQNVHKMLSLSVKANINLRPKQLN 511

Query:   489 GASISLEQFCRDTVMTIWHYHGGCQVDRVVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQA 548
                 S+ QFC+DTV+TIWHYHGGC V +VV  + KVLGVD LRVIDGSTF  SPGTNPQA
Sbjct:   512 DTK-SMAQFCKDTVVTIWHYHGGCLVGKVVSPNRKVLGVDRLRVIDGSTFDESPGTNPQA 570

Query:   549 TCMMLGRYMGLRILQDR 565
             T MM+GRYMG++IL++R
Sbjct:   571 TMMMMGRYMGVKILRER 587

GO:0005576 "extracellular region" evidence=ISM;ISS

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA

GO:0016832 "aldehyde-lyase activity" evidence=ISS

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA;ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0007267 "cell-cell signaling" evidence=IMP

GO:0046593 "mandelonitrile lyase activity" evidence=ISS

GO:0009553 "embryo sac development" evidence=IMP

GO:0010430 "fatty acid omega-oxidation" evidence=IMP

TAIR|locus:2032642 AT1G73050 [Arabidopsis thaliana (taxid:3702)]

 Score = 807 (289.1 bits), Expect = 6.6e-121, Sum P(2) = 6.6e-121
 Identities = 173/367 (47%), Positives = 229/367 (62%)

Query:    26 YYTFVKDATSAPLISYYDYIIVGGGTSGCPLAATLSQNATVLLLEKGGSPYENPNITDTG 85
             +  F+ +AT      YYDYIIVGGGT+GCPLAATLSQ+  VLLLE+GG PY  PN+    
Sbjct:    38 FMRFISNATDFASEDYYDYIIVGGGTAGCPLAATLSQSFRVLLLERGGVPYNRPNVMSHD 97

Query:    86 NFATTLLDPSP-TSPSQQFISEDGVYNARARVLGGGSVINAGFYTRASLRYVREVG--WT 142
              F TTL D +   SP+Q FISE+GV NAR RVLGG S INAGFY+RA  ++    G  W 
Sbjct:    98 GFLTTLTDVNNFDSPAQSFISEEGVPNARGRVLGGSSAINAGFYSRADKQFFENSGLVWD 157

Query:   143 ESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLLEAGVLPYNGFTFDHIYGTKVSGTIFDE 202
              S VN SYEWVE+ +   P +  WQ+A+RD LLE GV P+NGFT +H  GTK+ G+ FD 
Sbjct:   158 LSSVNQSYEWVERAIVFRPQLRTWQTAIRDALLEVGVHPFNGFTLEHKVGTKIGGSTFDR 217

Query:   203 DGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTET---GRAKPTAHCVTFYDHVGARHRA 259
              G RHS+ADLL YA    + V + A V+R+    +     +  +A  V + D +G  H A
Sbjct:   218 TGRRHSSADLLRYARSSNIRVAVYATVERVLLASSPSVSGSNVSAIGVVYRDQLGRFHHA 277

Query:   260 CLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMNAL 319
              + + G  E+ILSAGA+GSPQLL LSG+GP + L   GI V +DQP+VG  + DNP N +
Sbjct:   278 LIRDRG--EVILSAGALGSPQLLFLSGIGPRSYLSTWGIPVALDQPHVGDFVYDNPRNGI 335

Query:   320 FVPSARPVEVSLVQVVGITRFDSYIETASGLSLAPSWAQGLTRDYSSFLNKTDIPSLVTP 379
              +    P+E SL+QVVG+T   +++E AS  ++ P +A  L   +S F+     P  V  
Sbjct:   336 SIVPPVPMENSLIQVVGVTEDGAFLEAAS--NVIP-FASPL---HSVFIRAPASPLYVPV 389

Query:   380 ETVAEAV 386
              T+ E +
Sbjct:   390 TTIMEKI 396

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006952 "defense response" evidence=TAS

GO:0046202 "cyanide biosynthetic process" evidence=TAS

TAIR|locus:505006121 AT1G14185 [Arabidopsis thaliana (taxid:3702)]

 Score = 672 (241.6 bits), Expect = 2.4e-98, Sum P(3) = 2.4e-98
 Identities = 148/341 (43%), Positives = 206/341 (60%)

Query:     8 FAVIIFLFHGFCFAEKAPYYTFVKDATSAPLISYYDYIIVGGGTSGCPLAATLSQNATVL 67
             F  II +F       + PY T      S      +DYI+VGGGT+GC LAATLS+  +VL
Sbjct:     6 FLFIISMFINLSQGAQMPYMTTDPKEVSG---KSFDYIVVGGGTAGCSLAATLSEKYSVL 62

Query:    68 LLEKGGSPYENPNITDTGNFATTLLDPSP-TSPSQQFISEDGVYNARARVLGGGSVINAG 126
             ++E+GGSP+ +P + D   +  +L++    +S +Q F S DG+ N R RVLGG S IN G
Sbjct:    63 VIERGGSPFGDPLVEDKKYYGYSLINTDEYSSVAQSFTSVDGIKNHRGRVLGGSSAINGG 122

Query:   127 FYTRASLRYVREVGWTESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLLEAGVLPYNGFT 186
             FY+RAS  +V++ GW + LV  SY+WVE KV   P + +WQS V+ G LEAG  PYNG++
Sbjct:   123 FYSRASDEFVKKAGWDKDLVQESYKWVESKVVFMPELTRWQSIVQFGFLEAGFYPYNGYS 182

Query:   187 FDHIYGTKVSGTIFDEDGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHC 246
              +H  GTK+ G+IFD+ G RH++ADLL Y  P  +TV L A V+ I F      K  A  
Sbjct:   183 LEHTQGTKIGGSIFDQCGKRHTSADLLGYGKPNCITVLLNATVKSIIFDAN---KTRAVG 239

Query:   247 VTFYDHVGARHRACLNN--GGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQ 304
             V F +  G   ++   +    + E+IL+AGA+GSPQ+L+LSG+GP N L    I V+V+ 
Sbjct:   240 VRFMESDGNSSKSYKVHVEQHRGEVILAAGALGSPQILLLSGIGPENHLNDFDIPVIVNL 299

Query:   305 PNVGQGMSDNPMNALFVPS-ARPVEVSLVQVVGITRFDSYI 344
               VG+ MSDNP  +L V   ++ + V   QVV IT    +I
Sbjct:   300 KEVGKQMSDNPAISLLVDRFSQNLTVDPPQVVAITEGFKFI 340

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA

GO:0016832 "aldehyde-lyase activity" evidence=ISS

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|Q945K2 MDL2 "(R)-mandelonitrile lyase 2" [Prunus dulcis (taxid:3755)]

 Score = 662 (238.1 bits), Expect = 1.1e-97, Sum P(2) = 1.1e-97
 Identities = 143/321 (44%), Positives = 193/321 (60%)

Query:    26 YYTFVKDATSAPLISYYDYIIVGGGTSGCPLAATLSQNATVLLLEKGGSPYENPNITDTG 85
             Y +F  DAT   L   YDY+IVGGGTSGCPLAATLS+   VL+LE+G  P   PN+    
Sbjct:    38 YLSFAYDATDLELEGSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSLPTAYPNVLTAD 97

Query:    86 NFATTLL-DPSPTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRA--SLRYVREVGWT 142
              F   L  +    +P ++F+SEDG+ N R RVLGG S+INAG Y RA  S+     V W 
Sbjct:    98 GFVYNLQQEDDGKTPVERFVSEDGIDNVRGRVLGGTSIINAGVYARANTSIYSASGVDWD 157

Query:   143 ESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLLEAGVLPYNGFTFDHIYGTKVSGTIFDE 202
               LVN +YEWVE  + ++P    WQS  +   LEAGV P +GF+ DH  GT+++G+ FD 
Sbjct:   158 MDLVNQTYEWVEDTIVYKPNSQSWQSVTKTAFLEAGVHPNHGFSLDHEEGTRITGSTFDN 217

Query:   203 DGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLN 262
              G RH+A +LL   +   L V + A V++I F+       TA  V + D  G  H+A + 
Sbjct:   218 KGTRHAADELLNKGNSNNLRVGVHASVEKIIFSNAPGL--TATGVIYRDSNGTPHQAFVR 275

Query:   263 NGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMNALFVP 322
             +  K E+I+SAG IG+PQLL+LSGVGP + L    I VV+  P VGQ + DNP N + + 
Sbjct:   276 S--KGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNPRNFINIL 333

Query:   323 SARPVEVSLVQVVGITRFDSY 343
                P+E ++V V+GI+  D Y
Sbjct:   334 PPNPIEPTIVTVLGISN-DFY 353

GO:0046593 "mandelonitrile lyase activity" evidence=TAS

GO:0050660 "flavin adenine dinucleotide binding" evidence=IDA

GO:0050898 "nitrile metabolic process" evidence=TAS

TAIR|locus:2035830 AT1G14190 [Arabidopsis thaliana (taxid:3702)]

 Score = 657 (236.3 bits), Expect = 1.6e-97, Sum P(3) = 1.6e-97
 Identities = 136/300 (45%), Positives = 192/300 (64%)

Query:    25 PYYTFVKDATSAPLISYYDYIIVGGGTSGCPLAATLSQNATVLLLEKGGSPYENPNITDT 84
             PY T   DA      S+ DYI+VGGGT+GC LAATLS+  +VL++E+GGSP+ +P + + 
Sbjct:     2 PYMT--TDAKEVSGKSF-DYIVVGGGTAGCSLAATLSEKYSVLVIERGGSPFGDPLVEER 58

Query:    85 GNFATTLLDPSP-TSPSQQFISEDGVYNARARVLGGGSVINAGFYTRASLRYVREVGWTE 143
               F  +LL+    +S +Q F S DG+ N R RVLGG S IN GFY+RAS  +V++ GW +
Sbjct:    59 KYFGYSLLNTDEYSSVAQSFTSVDGIENYRGRVLGGSSAINGGFYSRASDEFVKKAGWDK 118

Query:   144 SLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLLEAGVLPYNGFTFDHIYGTKVSGTIFDED 203
              LV  SY+WVE KV   P + QWQS V+ G LEAG  PYNG++ +H  GTK+ G+I+D+ 
Sbjct:   119 GLVQESYKWVESKVVFMPELTQWQSVVQFGFLEAGFYPYNGYSLEHTQGTKIGGSIYDQC 178

Query:   204 GHRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNN 263
             G RH++ADLL +  P  +TV L   V+ I F  + + +     V F +  G   ++   +
Sbjct:   179 GKRHTSADLLGFGKPNCITVLLNTTVKSIIFDSSNKTRAVG--VRFMESDGNSSKSYKVH 236

Query:   264 --GGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMNALFV 321
                 + E+IL+AGA+GSPQ+L+LSG+GP N L+   I V+V+   VG+ MSDNP  +L V
Sbjct:   237 VEQHRGEVILAAGALGSPQILLLSGIGPENHLKDFDIPVIVNLKEVGRKMSDNPAISLLV 296

GO:0005634 "nucleus" evidence=ISM

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA

GO:0016832 "aldehyde-lyase activity" evidence=ISS

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

ASPGD|ASPL0000037024 AN3229 [Emericella nidulans (taxid:162425)]

 Score = 299 (110.3 bits), Expect = 2.1e-29, Sum P(2) = 2.1e-29
 Identities = 114/412 (27%), Positives = 180/412 (43%)

Query:   166 WQSAVRDGLLEAGVLPYNGFTFDHIYGTKVSGTIFDEDGHRHSAAD---LLEYADPEKLT 222
             W + +  GL   G+LP   F    + G+  +    +    +  +++   L +      LT
Sbjct:   215 WSTWIEQGLEAIGILPDTDFNTGTLNGSSWAPITINPLSQKRDSSETSFLQQSLKTTNLT 274

Query:   223 VYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLL 282
             VYL  +  +I F  T     TA  V     VG   R  L+   + EII+SAGA+ SPQLL
Sbjct:   275 VYLHTMALKIGFDGT-----TASSVDVRSPVG---RFTLS--ARREIIVSAGALQSPQLL 324

Query:   283 MLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMNALF--VPSARPVEVSLVQVVGITRF 340
             M+SG+GP   L + GI VV +   VGQ M ++P   +   V      E+++ Q   +   
Sbjct:   325 MVSGIGPRETLERHGIPVVKELAGVGQKMWEHPFFGITHQVNLVTATELAINQQALLQAL 384

Query:   341 DSYIETASGLSLAPSWAQGLTRDYSSFLNKTDIPSLVTPETVAEAVE--TVNSYLNGTIR 398
             + Y      L+ A     G  +  +S L+ +   +L T  +    +E  +++ YLNG   
Sbjct:   385 NQYKSQQGPLTSAGFGVLGWEKLPNSTLSDSTNEALATFPSDWPTIEYLSIDGYLNGWHS 444

Query:   399 A-----------GVIVEKIMGPRSTGHLRLRTLDADDNPSVTFNYFQEPEDLVRCVQGMR 447
             A           G I   ++ P S G++ + + D DD P     +   P D    V  MR
Sbjct:   445 AADQATGNGQQWGTIAVALVAPLSRGNVTISSSDMDDPPVFDLGFLTHPADREIAVAAMR 504

Query:   448 TIIDVLNSRALSKFRYPDVSVQELIDLMVNIPTNLRPRHVVGASISLEQFCRDTVMTIWH 507
              I       A+S+    D    E++           P   V     L  F R++++ ++H
Sbjct:   505 RIRQAF--AAISEITIGD----EVV-----------PGADVSTDEELLDFIRESIVPVYH 547

Query:   508 YHGGCQVDR------VVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMML 553
               G C + R      VVD   +V+GV+ LRV+D S F   P  +PQ+TC M+
Sbjct:   548 VAGTCAMGREDDPEAVVDPQARVIGVNNLRVVDASIFPTLPPGHPQSTCYMV 599

GO:0005575 "cellular_component" evidence=ND

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	570
PLN02785	587	PLN02785, PLN02785, Protein HOTHEAD	0.0
COG2303	542	COG2303, BetA, Choline dehydrogenase and related f	1e-44
TIGR03970	487	TIGR03970, Rv0697, dehydrogenase, Rv0697 family	1e-33
pfam05199	139	pfam05199, GMC_oxred_C, GMC oxidoreductase	2e-25
TIGR01810	532	TIGR01810, betA, choline dehydrogenase	7e-21
PRK02106	560	PRK02106, PRK02106, choline dehydrogenase; Validat	2e-20
PRK02106	560	PRK02106, PRK02106, choline dehydrogenase; Validat	8e-13
TIGR01810	532	TIGR01810, betA, choline dehydrogenase	7e-12
PRK02106	560	PRK02106, PRK02106, choline dehydrogenase; Validat	1e-09
pfam00732	218	pfam00732, GMC_oxred_N, GMC oxidoreductase	1e-08
COG0644	396	COG0644, FixC, Dehydrogenases (flavoproteins) [Ene	8e-05
COG0665	387	COG0665, DadA, Glycine/D-amino acid oxidases (deam	0.004
PTZ00367	567	PTZ00367, PTZ00367, squalene epoxidase; Provisiona	0.004

>gnl|CDD|215420 PLN02785, PLN02785, Protein HOTHEAD

 Score =  697 bits (1800), Expect = 0.0
 Identities = 297/553 (53%), Positives = 380/553 (68%), Gaps = 17/553 (3%)

Query: 27  YTFVKDATSAPLISY----------YDYIIVGGGTSGCPLAATLSQNATVLLLEKGGSPY 76
           Y F+  A+S    S           YDYI+VGGGT+GCPLAATLSQN +VLLLE+GG P+
Sbjct: 31  YPFIDKASSFSSSSSSSSSSGGDSAYDYIVVGGGTAGCPLAATLSQNFSVLLLERGGVPF 90

Query: 77  ENPNITDTGNFATTLLDPSPTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRASLRYV 136
            N N++   NF   L D SPTS SQ FIS DGV NARARVLGGG+ INAGFY+RAS R++
Sbjct: 91  GNANVSFLENFHIGLADTSPTSASQAFISTDGVINARARVLGGGTCINAGFYSRASTRFI 150

Query: 137 REVGWTESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLLEAGVLPYNGFTFDHIYGTKVS 196
           ++ GW   LVN SY WVE+++ H P +  WQ+A+RD LLE GV P+NGFT+DH+YGTKV 
Sbjct: 151 QKAGWDAKLVNESYPWVERQIVHWPKVAPWQAALRDSLLEVGVSPFNGFTYDHVYGTKVG 210

Query: 197 GTIFDEDGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGAR 256
           GTIFDE G RH+AA+LL   +P KL V L A VQ+I F +T   +P A  V F D  G +
Sbjct: 211 GTIFDEFGRRHTAAELLAAGNPNKLRVLLHATVQKIVF-DTSGKRPRATGVIFKDENGNQ 269

Query: 257 HRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPM 316
           H+A L+N   +EIILSAGAIGSPQ+L+LSG+GP  EL+K  I VV+   +VG+GM+DNPM
Sbjct: 270 HQAFLSNNKGSEIILSAGAIGSPQMLLLSGIGPKKELKKHKIPVVLHNEHVGKGMADNPM 329

Query: 317 NALFVPSARPVEVSLVQVVGITRFDSYIETASGLSLAPSWAQ---GLTRDYSSFLNKTDI 373
           N++FVPS  PVE SL+Q VGIT+   YIE +SG   +P       G+       L+ T  
Sbjct: 330 NSIFVPSKAPVEQSLIQTVGITKMGVYIEASSGFGQSPDSIHCHHGIMSAEIGQLS-TIP 388

Query: 374 PSLVTPETVAEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHLRLRTLDADDNPSVTFNYF 433
           P   TPE +   +    +  +     G I+EKI GP STGHL L   + DDNPSVTFNYF
Sbjct: 389 PKQRTPEAIQAYIHRKKNLPHEAFNGGFILEKIAGPISTGHLSLINTNVDDNPSVTFNYF 448

Query: 434 QEPEDLVRCVQGMRTIIDVLNSRALSKFRYPD-VSVQELIDLMVNIPTNLRPRHVVGASI 492
           + P+DL RCV G+RTI  ++ +   + F   D  ++++++++ V    NL P+H    + 
Sbjct: 449 KHPQDLQRCVYGIRTIEKIVKTNHFTNFTQCDKQTMEKVLNMSVKANINLIPKH-TNDTK 507

Query: 493 SLEQFCRDTVMTIWHYHGGCQVDRVVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMM 552
           SLEQFC+DTV+TIWHYHGGC V +VVD++YKVLGV  LRVIDGSTF  SPGTNPQAT MM
Sbjct: 508 SLEQFCKDTVITIWHYHGGCHVGKVVDQNYKVLGVSRLRVIDGSTFDESPGTNPQATVMM 567

Query: 553 LGRYMGLRILQDR 565
           +GRYMG++IL++R
Sbjct: 568 MGRYMGVKILRER 580

Length = 587

>gnl|CDD|225186 COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

 Score =  165 bits (420), Expect = 1e-44
 Identities = 137/578 (23%), Positives = 190/578 (32%), Gaps = 92/578 (15%)

Query: 42  YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPY----ENPNITD--TGNFATTLL-- 92
           YDY+IVG G++G  LAA LS    +VL+LE GG       + P                 
Sbjct: 8   YDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGGPDRRPLIQMPAAYAFLMNGPRYDWGFR 67

Query: 93  -DPSPTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRASLRYVREVGWTESLVNSSYE 151
            +P P    ++          R +VLGG S IN   Y R                   Y+
Sbjct: 68  TEPEPHLRGREL------AWPRGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYD 121

Query: 152 WVE------------------------KKVAHEPPMLQW--QSAVRDGLLEAGVLPYNGF 185
            V                           +   PP        A  +   + G       
Sbjct: 122 DVLPYFKRAEDLLGVGGQDLRTWHGGGGPLPVSPPRSPNPIARAFIEAGEQLGFPTTPDP 181

Query: 186 TFDHIYGTKV-SGTIFDEDGHRHSA--ADLLEYADPEKLTVYLRAVVQRIKFTETGRAKP 242
                 G      TI   +G R SA  A L        LT+   A V+RI   E  RA  
Sbjct: 182 NGADQEGFGPYCVTI--CNGRRWSAARAYLKPALKRPNLTLLTGARVRRILL-EGDRAV- 237

Query: 243 TAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVV 302
                   +                E++L+AGAI SP+LL+LSG+GPA+ L + GI VV 
Sbjct: 238 ----GVEVEIGDGGTIETAVAAR--EVVLAAGAINSPKLLLLSGIGPADHLLEHGIDVVG 291

Query: 303 DQPNVGQGMSDNPMNALFVPSARPVEV-----SLVQVVGITRFDSYIETASGLSLAPSWA 357
             P VGQ + D     ++V             SL   +GI   D Y+ T  G      + 
Sbjct: 292 RLPGVGQNLQD--HLEIYVAFEATEPTNDSVLSLFSKLGIG-ADRYLLTRDGPGATNHFE 348

Query: 358 QGLTRDYSSFLNKTDIPSLVTPETVAEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHLRL 417
            G  R                    A     + +          +    M P+S G + L
Sbjct: 349 GGFVRS------GPAGEYPDGQYHFAPLPLAIRAAGAE--HGFTLHVGPMRPKSRGSVTL 400

Query: 418 RTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLMVN 477
           R+ D D+ P +  NY     D      G+R   +++   AL   R               
Sbjct: 401 RSPDPDNRPVIDPNYLSAEGDRAIFRAGIRLTREIIGQPALDARR--------------- 445

Query: 478 IPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQV-----DRVVDRDYKVLGVDGLRV 532
               L P   V     +    R    T +H  G C++       V D   +V G++ LRV
Sbjct: 446 -KAELAPGPRVTTDEDISAAIRFLARTAYHPMGTCRMGSDPAAVVDDPYLRVHGLENLRV 504

Query: 533 IDGSTFYNSPGTNPQATCMMLGRYMGLRILQDRDRISF 570
           +D S    S G NP  T + L       IL D      
Sbjct: 505 VDASVMPTSTGVNPNLTIIALAERAADHILGDAPAAVR 542

Length = 542

>gnl|CDD|234421 TIGR03970, Rv0697, dehydrogenase, Rv0697 family

 Score =  133 bits (336), Expect = 1e-33
 Identities = 147/556 (26%), Positives = 198/556 (35%), Gaps = 122/556 (21%)

Query: 43  DYIIVGGGTSGCPLAATLSQN--ATVLLLEKGGSPYENPNITDTGNFATTLLDPS--PTS 98
           D ++VGGG++GC +AA LS++   TV +LE G      P   D       L D    P  
Sbjct: 2   DVLVVGGGSAGCVVAARLSEDPSCTVTVLEAG------PGYRDPSRLPAQLTDGLRLPIG 55

Query: 99  PSQQFISEDGVY----------NARARVLGGGSVINAGFYTR---ASLRYVREVGWTESL 145
           P+   +   GV             R RVLGG   +N G++ R   A        GW+   
Sbjct: 56  PASPVVWRYGVELTDGPRRASAIVRGRVLGGSGAVNGGYFCRALPADFDAWPIPGWSWDD 115

Query: 146 VNSSYEWVEK---------------KVAHEPPMLQWQSAVRDGLLEAG---VLPYNGFTF 187
           V   +  +E                 V     +    +A     L AG   +   NG   
Sbjct: 116 VLPHFRAIETDLDFDGPLHGTAGPIPVRRTAELDGISAAFVAAALGAGFGWIADLNGSGP 175

Query: 188 DHIYGT-KVSGTIFDEDGHRHS--AADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTA 244
           D   G   V   +  + G R S   A LL       LTV     V RI F    RA    
Sbjct: 176 DAPTGVGAVPLNV--DGGRRVSTAVAYLLPALKRPNLTVEADTRVVRILF-SGTRA---- 228

Query: 245 HCVTFYDHVGARHRACLNNGGK-----NEIILSAGAIGSPQLLMLSGVGPANELRKRGIR 299
                   VG      L +GG      + ++L AGA+ S  LL+LSG+GPA +LR  GI 
Sbjct: 229 --------VGVE---VLGDGGPRTLRADRVVLCAGAVESAHLLLLSGIGPAEQLRAAGIA 277

Query: 300 VVVDQPNVGQGMSDNPMNALFVPSARPVEVSLVQVVGITRFDSYIETASGLSLAPSWAQG 359
           VV+D P VG    D+P   L                        +ET             
Sbjct: 278 VVLDLP-VGSDFVDHPEWVL--------PYRWRPTHDRPDTSPVLETV------------ 316

Query: 360 LTRDYSSFLNKTDIPSLVTPETVAEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHLRLRT 419
                   LN  DI   + P T         S  +     GV    +M P S G +RL +
Sbjct: 317 --------LNTADIE--IRPYTAGFTALVPGSPRD-DPHLGVA---LMRPHSRGRIRLAS 362

Query: 420 LDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLMVNIP 479
            D  D P +   Y     D      G     ++L S  L     P V   E   ++  + 
Sbjct: 363 ADPADPPRIEHRYDSSAADRAALRAGAALAHELLGSPELGPLLEPAVREGEASWVLARLA 422

Query: 480 TNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVDR-VVDRDYKVLGVDGLRVIDGSTF 538
           T+    H+ G+       CR          GG      VVD   +V GV+GL V+DGS  
Sbjct: 423 TSQ---HLCGS-------CR---------MGGRDDPGAVVDARCRVRGVEGLWVVDGSIL 463

Query: 539 YNSPGTNPQATCMMLG 554
              P   P AT +M+ 
Sbjct: 464 PVIPSRGPHATAVMVA 479

This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. Length = 487

>gnl|CDD|218493 pfam05199, GMC_oxred_C, GMC oxidoreductase

 Score =  101 bits (254), Expect = 2e-25
 Identities = 45/151 (29%), Positives = 62/151 (41%), Gaps = 20/151 (13%)

Query: 409 PRSTGHLRLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSV 468
           PRS G + L + D    P +  NY  +P DL      +R    +L   A      P    
Sbjct: 1   PRSRGRVTLSSSDPLGLPVIDPNYLSDPADLAALRAALRLARRILA--AALVELTP---- 54

Query: 469 QELIDLMVNIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQV-----DRVVDRDYK 523
                     P  + P     +   + ++ R   +T WH  G C++     D VVD D +
Sbjct: 55  ---------GPVEVVPGAAEASDDEILEYIRAAAVTSWHPMGTCRMGADPDDGVVDPDLR 105

Query: 524 VLGVDGLRVIDGSTFYNSPGTNPQATCMMLG 554
           V GVD LRV+D S F +SP  NP  T   L 
Sbjct: 106 VHGVDNLRVVDASVFPSSPSGNPTLTIYALA 136

This domain found associated with pfam00732. Length = 139

>gnl|CDD|233581 TIGR01810, betA, choline dehydrogenase

 Score = 96.1 bits (239), Expect = 7e-21
 Identities = 97/305 (31%), Positives = 136/305 (44%), Gaps = 46/305 (15%)

Query: 43  DYIIVGGGTSGCPLAATLSQ--NATVLLLEKGGSPYE-NPNITDTGNFA----TTLLDPS 95
           DYII+GGG++G  LA  LS+  + +VL+LE GGS Y  +  I      A        +  
Sbjct: 1   DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWI 60

Query: 96  PTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRASL----RYVREVG---WTESLVNS 148
             +  +  ++   V +AR +VLGG S IN   Y R +     ++ +  G   W  +    
Sbjct: 61  YETEPEPHMNNRRVGHARGKVLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYADCLP 120

Query: 149 SYEWVEKKV-------AHEPPMLQWQSAVRDGL----LEAGVLPYNGFTFDHIYGTKVSG 197
            Y+ +E           H+ P+   +    + L    +EAGV      T D + G +  G
Sbjct: 121 YYKRLETTFGGEKPYRGHDGPIKVRRGPADNPLFQAFIEAGVEAGYNKTPD-VNGFRQEG 179

Query: 198 -TIFDE---DGHRHSAADLLEYADPEK----LTVYLRAVVQRIKFTETGRAKPTAHCVTF 249
               D    +G R SAA    Y  P      L V  RA V +I F E  RA      V F
Sbjct: 180 FGPMDSTVHNGRRVSAAR--AYLHPAMKRPNLEVQTRAFVTKINF-EGNRATG----VEF 232

Query: 250 YDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQ 309
               G +     N     E+ILSAGAI SPQLL LSG+G A  LR+ GI   +  P VG+
Sbjct: 233 KKG-GRKEHTEANK----EVILSAGAINSPQLLQLSGIGDAEHLRELGIEPRIHLPGVGE 287

Query: 310 GMSDN 314
            + D+
Sbjct: 288 NLQDH 292

Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. Length = 532

>gnl|CDD|235000 PRK02106, PRK02106, choline dehydrogenase; Validated

 Score = 94.9 bits (237), Expect = 2e-20
 Identities = 48/115 (41%), Positives = 59/115 (51%), Gaps = 16/115 (13%)

Query: 203 DGHRHSAADLLEYADPEK----LTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHR 258
           +G R SAA    Y DP      LT+   A+  RI F E  RA      V +    G    
Sbjct: 196 NGRRWSAAR--AYLDPALKRPNLTIVTHALTDRILF-EGKRAVG----VEYERGGGRETA 248

Query: 259 ACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSD 313
                  + E+ILSAGAI SPQLL LSG+GPA  L++ GI VV D P VG+ + D
Sbjct: 249 RA-----RREVILSAGAINSPQLLQLSGIGPAEHLKELGIPVVHDLPGVGENLQD 298

Length = 560

>gnl|CDD|235000 PRK02106, PRK02106, choline dehydrogenase; Validated

 Score = 70.6 bits (174), Expect = 8e-13
 Identities = 42/166 (25%), Positives = 64/166 (38%), Gaps = 32/166 (19%)

Query: 407 MGPRSTGHLRLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFR---- 462
           M   S G ++L++ D   +PS+ FNY    +D       +R   +++   AL  +R    
Sbjct: 389 MRSPSRGSVKLKSADPRAHPSILFNYMSTEQDWREFRDAIRLTREIMAQPALDPYRGREI 448

Query: 463 YPDVSVQ--ELIDLMVNIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVDR---- 516
            P   VQ  E ID                       F R+   T +H    C++      
Sbjct: 449 SPGADVQTDEEID----------------------AFVREHAETAYHPSCTCKMGTDPMA 486

Query: 517 VVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLGRYMGLRIL 562
           VVD + +V GV+GLRV+D S        N  A  +M+       I 
Sbjct: 487 VVDPEGRVHGVEGLRVVDASIMPTITNGNLNAPTIMIAEKAADLIR 532

Length = 560

>gnl|CDD|233581 TIGR01810, betA, choline dehydrogenase

 Score = 67.6 bits (165), Expect = 7e-12
 Identities = 40/154 (25%), Positives = 67/154 (43%), Gaps = 22/154 (14%)

Query: 407 MGPRSTGHLRLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDV 466
           M   S GH+++++ D  + P + FNY    ED     + +R   ++L  +AL  +R  ++
Sbjct: 382 MYSNSRGHVKIKSKDPFEKPEIVFNYMSHEEDWREFREAIRVTREILKQKALDPYRGGEI 441

Query: 467 SVQELIDLMVNIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVD------RVVDR 520
           S                P   V     +++F R    T  H  G C++        VVD 
Sbjct: 442 S----------------PGPEVQTDEEIDEFVRRHGETALHPCGTCKMGPASDEMSVVDP 485

Query: 521 DYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLG 554
           + +V G++GLRV+D S        N  A  +M+G
Sbjct: 486 ETRVHGMEGLRVVDASIMPRITNGNLNAPVIMMG 519

Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. Length = 532

>gnl|CDD|235000 PRK02106, PRK02106, choline dehydrogenase; Validated

 Score = 61.0 bits (149), Expect = 1e-09
 Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 29/107 (27%)

Query: 42  YDYIIVGGGTSGCPLAATLSQNA--TVLLLEKGGSPYENPNITDTGNFATTLLDPSPTS- 98
           YDYII+G G++GC LA  LS++   +VLLLE GG            ++        P + 
Sbjct: 6   YDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP-----------DYRWDFFIQMPAAL 54

Query: 99  --PSQ------QFISE-----DG--VYNARARVLGGGSVINAGFYTR 130
             P Q       + +E     +   +   R +VLGG S IN   Y R
Sbjct: 55  AFPLQGKRYNWAYETEPEPHMNNRRMECPRGKVLGGSSSINGMVYIR 101

Length = 560

>gnl|CDD|216089 pfam00732, GMC_oxred_N, GMC oxidoreductase

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 42/200 (21%), Positives = 64/200 (32%), Gaps = 37/200 (18%)

Query: 112 ARARVLGGGSVINAGFYTRASLRYVRE-------VGWTESLVNSSYEWVEKK--VAHEPP 162
                +GGGS +N     R     + E        GW         + VE    V  +  
Sbjct: 22  PAGSTVGGGSSVNWSACIRTPAAVLDEWASEFGLEGWGYDDYLPYMDKVEGPLGVTTKGI 81

Query: 163 MLQWQS-AVRDGLLEAG----VLP--YNGFTFD--HIYGTKVSGTIFDEDGHRHSAADLL 213
                + A+     E G     +P   NG  +      G           G + S A   
Sbjct: 82  EESPLNQALLKAAEELGYPVEAVPRNSNGCHYCGFCGLGCP--------TGAKQSTA--R 131

Query: 214 EYADPEK---LTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEII 270
            +  P     L +   A  ++I     G     A  V   D  G   R         E++
Sbjct: 132 TWLRPALERNLRILTGAKAEKIIILGRG---GRAVGVEARDGGGGIKRLITAAK---EVV 185

Query: 271 LSAGAIGSPQLLMLSGVGPA 290
           ++AGA+ +P LL+ SG+G  
Sbjct: 186 VAAGALNTPPLLLRSGLGKN 205

This family of proteins bind FAD as a cofactor. Length = 218

>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]

 Score = 44.8 bits (106), Expect = 8e-05
 Identities = 23/87 (26%), Positives = 30/87 (34%), Gaps = 11/87 (12%)

Query: 42  YDYIIVGGGTSGCPLAATLSQN-ATVLLLEKG---GSPYENPNITDTGNFATTLLDPSPT 97
           YD +IVG G +G   A  L++    VL+LEKG   G+                + D    
Sbjct: 4   YDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEE 63

Query: 98  SPSQQFISEDGVYNARARVLGGGSVIN 124
                   E  V  AR    G    I 
Sbjct: 64  -------IERKVTGARIYFPGEKVAIE 83

Length = 396

>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

 Score = 39.5 bits (92), Expect = 0.004
 Identities = 55/287 (19%), Positives = 84/287 (29%), Gaps = 39/287 (13%)

Query: 42  YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYENPNITDTGNFATTLLDPSPTSPS 100
            D +I+GGG  G   A  L++  A V +LE G +          G  A  +L P   SP 
Sbjct: 5   MDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGGGA-----AGRNAGGILAPW-ASPG 58

Query: 101 QQFISEDGVYNARA--RVLGGGSVINAGFYTRASLRYVREVGWTESLVNSSYEWVEKKVA 158
            +         + A  R L       AG   R  L      G          E +  ++ 
Sbjct: 59  GELEVRPLADLSLALWRELSEELGTGAGLRRRGLLDLAAREGLKGLA---QLERLAAELE 115

Query: 159 HEPPMLQWQSAVRDGLLEAGVLPYNGFTFDHIYGTKVSGTIFDEDGHRHSAADLLEYADP 218
                 +   A     LE             +    V G +FD  G            DP
Sbjct: 116 AAGEDAELLDAAEAAELEPA-----------LGPDFVCGGLFDPTGGH---------LDP 155

Query: 219 EKLTVYLRAVVQRIKFTETGRAKPTAHC-VTFYDHVGARHRACLNNGG-KNEIILSAGAI 276
             LT  L A  + +     G         VT  +  G       + G  + + ++ A   
Sbjct: 156 RLLTRALAAAAEEL-----GVVIIEGGTPVTSLERDGRVVGVETDGGTIEADKVVLAAGA 210

Query: 277 GSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMNALFVPS 323
            + +L    G  P      RG  +  + P         P+  +    
Sbjct: 211 WAGELAATLGELPLPLRPVRGQALTTEPPEGLLADGLAPVVLVVDDG 257

Length = 387

>gnl|CDD|240384 PTZ00367, PTZ00367, squalene epoxidase; Provisional

 Score = 39.4 bits (92), Expect = 0.004
 Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 42 YDYIIVGGGTSGCPLAATLS-QNATVLLLEK 71
          YD IIVGG  +G  LA  LS Q   VL+LE+
Sbjct: 34 YDVIIVGGSIAGPVLAKALSKQGRKVLMLER 64

Length = 567

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	570
PLN02785	587	Protein HOTHEAD	100.0
KOG1238	623	consensus Glucose dehydrogenase/choline dehydrogen	100.0
PRK02106	560	choline dehydrogenase; Validated	100.0
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	100.0
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	100.0
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	100.0
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	100.0
PF05199	144	GMC_oxred_C: GMC oxidoreductase; InterPro: IPR0078	99.98
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	99.63
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.62
PRK07121	492	hypothetical protein; Validated	99.58
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.56
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	99.55
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.54
PRK08274	466	tricarballylate dehydrogenase; Validated	99.54
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	99.53
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	99.51
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	99.47
PRK12839	572	hypothetical protein; Provisional	99.47
PRK06175	433	L-aspartate oxidase; Provisional	99.45
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.45
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	99.45
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	99.44
PRK12842	574	putative succinate dehydrogenase; Reviewed	99.43
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	99.42
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	99.42
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	99.42
PRK07395	553	L-aspartate oxidase; Provisional	99.42
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	99.41
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	99.41
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	99.41
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	99.41
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	99.4
PLN02815	594	L-aspartate oxidase	99.39
COG2081	408	Predicted flavoproteins [General function predicti	99.36
PRK07804	541	L-aspartate oxidase; Provisional	99.36
PRK09077	536	L-aspartate oxidase; Provisional	99.35
PRK08071	510	L-aspartate oxidase; Provisional	99.34
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	99.33
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	99.32
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	99.32
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	99.32
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	99.32
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	99.3
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	99.29
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	99.29
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	99.29
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	99.28
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	99.27
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.27
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	99.25
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	99.24
PRK07512	513	L-aspartate oxidase; Provisional	99.23
PRK08275	554	putative oxidoreductase; Provisional	99.19
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	99.18
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	99.16
PLN02464	627	glycerol-3-phosphate dehydrogenase	99.15
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	99.15
COG0579	429	Predicted dehydrogenase [General function predicti	99.14
PTZ00383	497	malate:quinone oxidoreductase; Provisional	99.09
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.07
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	99.07
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	99.07
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	99.07
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	99.06
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	99.06
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	99.05
PRK08401	466	L-aspartate oxidase; Provisional	99.02
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	99.01
PRK05257	494	malate:quinone oxidoreductase; Validated	99.0
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	98.99
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	98.99
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	98.99
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	98.99
COG3573	552	Predicted oxidoreductase [General function predict	98.96
PLN02661	357	Putative thiazole synthesis	98.96
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	98.95
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	98.95
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	98.95
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	98.93
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	98.93
PRK13339	497	malate:quinone oxidoreductase; Reviewed	98.92
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	98.92
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	98.9
PRK11728	393	hydroxyglutarate oxidase; Provisional	98.89
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	98.87
PRK10157	428	putative oxidoreductase FixC; Provisional	98.8
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	98.8
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	98.78
PRK13977	576	myosin-cross-reactive antigen; Provisional	98.74
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	98.73
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	98.73
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	98.73
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	98.67
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	98.67
PRK10015	429	oxidoreductase; Provisional	98.65
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	98.61
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	98.61
TIGR00275	400	flavoprotein, HI0933 family. The model when search	98.6
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	98.6
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	98.59
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	98.59
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	98.58
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	98.57
PRK06185	407	hypothetical protein; Provisional	98.55
PLN02985	514	squalene monooxygenase	98.5
PRK05675	570	sdhA succinate dehydrogenase flavoprotein subunit;	98.5
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	98.5
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.44
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.43
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	98.42
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	98.4
KOG2853	509	consensus Possible oxidoreductase [General functio	98.37
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.36
PRK06126	545	hypothetical protein; Provisional	98.34
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	98.33
PRK07208	479	hypothetical protein; Provisional	98.32
PLN02697	529	lycopene epsilon cyclase	98.31
TIGR01816	565	sdhA_forward succinate dehydrogenase, flavoprotein	98.3
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.26
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.24
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	98.24
PRK08244	493	hypothetical protein; Provisional	98.21
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	98.21
PRK06847	375	hypothetical protein; Provisional	98.17
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	98.16
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.14
PRK07190	487	hypothetical protein; Provisional	98.12
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	98.12
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.12
PRK06834	488	hypothetical protein; Provisional	98.11
PRK06184	502	hypothetical protein; Provisional	98.1
PRK07045	388	putative monooxygenase; Reviewed	98.1
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	98.1
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	98.1
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	98.09
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	98.06
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	98.06
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	98.04
PRK11445	351	putative oxidoreductase; Provisional	98.03
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	98.01
PRK08132	547	FAD-dependent oxidoreductase; Provisional	98.01
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.0
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	98.0
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	97.98
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	97.94
KOG2960	328	consensus Protein involved in thiamine biosynthesi	97.92
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	97.91
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	97.91
PRK07236	386	hypothetical protein; Provisional	97.9
PRK07588	391	hypothetical protein; Provisional	97.89
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	97.88
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	97.84
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	97.83
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	97.83
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	97.82
PTZ00058	561	glutathione reductase; Provisional	97.81
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	97.8
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	97.77
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	97.76
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.73
PRK06116	450	glutathione reductase; Validated	97.69
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	97.68
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	97.68
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	97.67
PRK06370	463	mercuric reductase; Validated	97.66
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	97.66
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	97.65
PRK05868	372	hypothetical protein; Validated	97.65
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	97.65
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	97.64
PTZ00367	567	squalene epoxidase; Provisional	97.63
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	97.62
PRK09126	392	hypothetical protein; Provisional	97.62
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	97.62
PRK08013	400	oxidoreductase; Provisional	97.61
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	97.61
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.6
PLN02546	558	glutathione reductase	97.59
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	97.59
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	97.59
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	97.58
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	97.58
PLN02463	447	lycopene beta cyclase	97.56
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	97.55
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	97.55
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	97.54
PRK14694	468	putative mercuric reductase; Provisional	97.54
PTZ00153	659	lipoamide dehydrogenase; Provisional	97.54
PLN02676	487	polyamine oxidase	97.54
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	97.53
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	97.53
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	97.53
PRK13748	561	putative mercuric reductase; Provisional	97.52
PRK09897	534	hypothetical protein; Provisional	97.52
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.51
PLN02507	499	glutathione reductase	97.49
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	97.48
TIGR02053	463	MerA mercuric reductase. This model represents the	97.48
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	97.48
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	97.47
KOG2852	380	consensus Possible oxidoreductase [General functio	97.45
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	97.45
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	97.45
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	97.42
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	97.41
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	97.41
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	97.41
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	97.4
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.38
PLN02268	435	probable polyamine oxidase	97.37
PTZ00052	499	thioredoxin reductase; Provisional	97.36
PRK14727	479	putative mercuric reductase; Provisional	97.29
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	97.29
PRK10262	321	thioredoxin reductase; Provisional	97.28
PRK11883	451	protoporphyrinogen oxidase; Reviewed	97.27
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	97.27
PRK07233	434	hypothetical protein; Provisional	97.26
PRK08163	396	salicylate hydroxylase; Provisional	97.25
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	97.24
PRK06996	398	hypothetical protein; Provisional	97.24
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	97.22
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.18
PRK06753	373	hypothetical protein; Provisional	97.18
PLN02576	496	protoporphyrinogen oxidase	97.17
COG2907	447	Predicted NAD/FAD-binding protein [General functio	97.16
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	97.15
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	97.14
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	97.1
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.09
COG3349	485	Uncharacterized conserved protein [Function unknow	97.08
PLN02568	539	polyamine oxidase	97.08
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	97.07
PRK07538	413	hypothetical protein; Provisional	97.06
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	97.05
PRK08294	634	phenol 2-monooxygenase; Provisional	97.05
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	97.02
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	97.01
PRK07846	451	mycothione reductase; Reviewed	96.97
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	96.94
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	96.9
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	96.89
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	96.87
PRK12416	463	protoporphyrinogen oxidase; Provisional	96.85
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	96.85
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	96.83
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	96.82
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	96.79
PRK12831	464	putative oxidoreductase; Provisional	96.77
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	96.75
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	96.7
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	96.69
PRK06475	400	salicylate hydroxylase; Provisional	96.67
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	96.65
PLN02529	738	lysine-specific histone demethylase 1	96.65
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	96.63
PLN02328	808	lysine-specific histone demethylase 1 homolog	96.63
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	96.59
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	96.58
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	96.56
PLN02612	567	phytoene desaturase	96.52
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	96.49
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	96.47
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	96.45
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	96.37
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	96.34
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	96.34
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	96.31
PRK12779	944	putative bifunctional glutamate synthase subunit b	96.3
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	96.27
PLN02852	491	ferredoxin-NADP+ reductase	96.26
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	96.26
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	96.22
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	96.19
PLN02487	569	zeta-carotene desaturase	96.18
PRK14989	847	nitrite reductase subunit NirD; Provisional	96.16
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	96.12
PRK12770	352	putative glutamate synthase subunit beta; Provisio	96.0
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	95.98
PRK12814	652	putative NADPH-dependent glutamate synthase small	95.97
PLN03000	881	amine oxidase	95.95
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	95.92
PLN02976	1713	amine oxidase	95.9
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	95.79
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	95.63
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	95.59
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	95.59
PRK06567	1028	putative bifunctional glutamate synthase subunit b	95.49
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	95.43
PTZ00188	506	adrenodoxin reductase; Provisional	95.37
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	95.36
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	95.31
PRK12831	464	putative oxidoreductase; Provisional	95.23
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	95.19
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	95.13
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	95.08
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	94.96
PRK13984	604	putative oxidoreductase; Provisional	94.92
PRK09564	444	coenzyme A disulfide reductase; Reviewed	94.78
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	94.7
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	94.67
PRK09564	444	coenzyme A disulfide reductase; Reviewed	94.42
PRK13512	438	coenzyme A disulfide reductase; Provisional	94.37
PRK10262	321	thioredoxin reductase; Provisional	94.16
KOG4405	547	consensus GDP dissociation inhibitor [Signal trans	94.15
KOG1439	440	consensus RAB proteins geranylgeranyltransferase c	94.08
KOG2403	642	consensus Succinate dehydrogenase, flavoprotein su	93.95
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	93.93
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	93.62
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	93.53
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	93.4
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	92.74
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	92.69
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	92.65
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	92.21
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	91.56
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	91.44
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	90.86
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	90.78
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	90.71
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	90.11
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	89.88
KOG2755	334	consensus Oxidoreductase [General function predict	89.75
COG4716	587	Myosin-crossreactive antigen [Function unknown]	89.7
COG0569	225	TrkA K+ transport systems, NAD-binding component [	89.37
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	89.14
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	88.47
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	88.26
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	87.75
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	87.24
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	87.17
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	87.08
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	87.04
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	86.69
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	86.57
PRK07846	451	mycothione reductase; Reviewed	86.4
PRK06567	1028	putative bifunctional glutamate synthase subunit b	86.1
TIGR02053	463	MerA mercuric reductase. This model represents the	86.01
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	85.99
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	85.69
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	85.69
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	85.19
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	85.05
PRK06370	463	mercuric reductase; Validated	84.79
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	84.5
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	84.16
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	84.15
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	83.96
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	83.91
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	83.86
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	83.35
PRK13512	438	coenzyme A disulfide reductase; Provisional	83.29
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	83.0
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	82.94
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	82.92
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	82.65
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	82.6
PLN02487	569	zeta-carotene desaturase	82.52
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	82.15
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	82.15
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	82.05
PRK04148	134	hypothetical protein; Provisional	81.84
KOG2018	430	consensus Predicted dinucleotide-utilizing enzyme	81.73
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	81.59
PTZ00153	659	lipoamide dehydrogenase; Provisional	81.13
PTZ00058	561	glutathione reductase; Provisional	80.98
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	80.85
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	80.58
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	80.37
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	80.3
PLN02507	499	glutathione reductase	80.16
PRK06116	450	glutathione reductase; Validated	80.1
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	80.09

>PLN02785 Protein HOTHEAD

Probab=100.00  E-value=3.2e-85  Score=703.87  Aligned_cols=539  Identities=55%  Similarity=0.927  Sum_probs=407.9

Q ss_pred             CcceeeecccCCCC----------CCcccEEEECCCCchhHHHHhhhccCeEEEEccCCCCCCCCCcccccccccccCCC
Q 008331           25 PYYTFVKDATSAPL----------ISYYDYIIVGGGTSGCPLAATLSQNATVLLLEKGGSPYENPNITDTGNFATTLLDP   94 (570)
Q Consensus        25 ~~~~~~~~~~~~~~----------~~~~DvIIVGsG~aG~~~A~~La~g~~VlvLE~G~~~~~~~~~~~~~~~~~~~~~~   94 (570)
                      +.+.|+.++.+.+.          ..+|||||||+|.+||++|.+|+++.+|||||+|+....++....+..+.....+|
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IIVG~G~aG~~lA~~Ls~~~~VLllE~G~~~~~~~~~~~~~~~~~~~~d~  108 (587)
T PLN02785         29 YRYPFIDKASSFSSSSSSSSSSGGDSAYDYIVVGGGTAGCPLAATLSQNFSVLLLERGGVPFGNANVSFLENFHIGLADT  108 (587)
T ss_pred             cCCchhhccccccccccccccccccccCCEEEECcCHHHHHHHHHHhcCCcEEEEecCCCCCCCchhhhHHhhCCccccc
Confidence            35788888888776          66899999999999999999999988999999998643334443344443344567


Q ss_pred             CCCCCCcccccCCcccccCCceeccccccCceeeeCCChhhhhhCCCChhhhhhhhHHHHhhccCCCCCcchHHHHHHHH
Q 008331           95 SPTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRASLRYVREVGWTESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGL  174 (570)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~g~~lGG~s~~~~~~~~r~~~~~~~~~gw~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (570)
                      .+.+.++.+..++++.+.|||+|||+|.+|+|+|.|++++++++.||+|+.+.++|++.|+.+...|...++...+.+++
T Consensus       109 ~~~~~~q~~~~~~~~~~~rGr~LGGsS~iN~~~y~Rg~~~d~~~~GW~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~a~  188 (587)
T PLN02785        109 SPTSASQAFISTDGVINARARVLGGGTCINAGFYSRASTRFIQKAGWDAKLVNESYPWVERQIVHWPKVAPWQAALRDSL  188 (587)
T ss_pred             CCccccccccCCCceeccccceecchhhhcCeEEEeCCHHHhccCCCCcccccchHHHHhcccccCCCcChHHHHHHHHH
Confidence            78777777778889999999999999999999999999998888899999999999999987655666678889999999


Q ss_pred             HHcCCCCCCCCCcCCCCcceeeeeEECCCCccccHHHhhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCC
Q 008331          175 LEAGVLPYNGFTFDHIYGTKVSGTIFDEDGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVG  254 (570)
Q Consensus       175 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G  254 (570)
                      .++|+++++++..+...|...+.+.++..|.|+++..+++.+.+.|++|++++.|++|++++++ ...+++||++.+.+|
T Consensus       189 ~e~G~~~~n~~~~d~~~G~~~g~~i~~~~g~R~saa~l~~~~~~~nl~Vl~~a~V~rIl~~~~~-~~~ra~GV~~~~~~g  267 (587)
T PLN02785        189 LEVGVSPFNGFTYDHVYGTKVGGTIFDEFGRRHTAAELLAAGNPNKLRVLLHATVQKIVFDTSG-KRPRATGVIFKDENG  267 (587)
T ss_pred             HHcCCCccCCCCCCCccceeeeEEEeCCCCEEcCHHHHHhhcCCCCeEEEeCCEEEEEEEcCCC-CCceEEEEEEEECCC
Confidence            9999988887777777666677777777789999888888778899999999999999998642 223899999998778


Q ss_pred             ceEEEEecCCCCceEEEcCCccccHHHHHHhCCCChhhhhhcCCcccccCCccCcccccCCCceeeeccCCcccchhhhh
Q 008331          255 ARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMNALFVPSARPVEVSLVQV  334 (570)
Q Consensus       255 ~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGiG~~~~l~~~gi~~~~~~p~VG~~l~dh~~~~~~~~~~~~~~~~~~~~  334 (570)
                      ..+++.+..+++++||||||+|+||+|||+|||||+++|+++||+++.|+|.||+||+|||...+.+..+.+......+.
T Consensus       268 ~~~~~~~~~~~~~eVILsAGai~sP~lL~~SGIGp~~~L~~~gIpvv~dlP~VG~NL~DHp~~~i~~~~~~~~~~~~~~~  347 (587)
T PLN02785        268 NQHQAFLSNNKGSEIILSAGAIGSPQMLLLSGIGPKKELKKHKIPVVLHNEHVGKGMADNPMNSIFVPSKAPVEQSLIQT  347 (587)
T ss_pred             ceEEEEeecccCceEEecccccCCHHHHHHcCCCCHHHHHHcCCCeeecCCCcccchhhCcccceEEEeCCCchhhhHhh
Confidence            75554322225689999999999999999999999999999999999999999999999999888877665543222232


Q ss_pred             hcccchhhhHhhhcCCccCcCc----cccccccccccccccCCCCCCChHHHHHHhHhhhccCCCceeeEEEEeeccccc
Q 008331          335 VGITRFDSYIETASGLSLAPSW----AQGLTRDYSSFLNKTDIPSLVTPETVAEAVETVNSYLNGTIRAGVIVEKIMGPR  410 (570)
Q Consensus       335 ~~~~~~~~~~~~~~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  410 (570)
                      ++....+.|.....+.......    ...+....+.+  ...++....++.+..++......+...+....+...+..|.
T Consensus       348 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~  425 (587)
T PLN02785        348 VGITKMGVYIEASSGFGQSPDSIHCHHGIMSAEIGQL--STIPPKQRTPEAIQAYIHRKKNLPHEAFNGGFILEKIAGPI  425 (587)
T ss_pred             hhhhccccceecccccccCchhhhhhccccccccccc--cccCcccccchhhhhhccCcccccccccccceEEEEecCCC
Confidence            2222222332221111000000    00000000000  01122222222222222111111111121123456778999


Q ss_pred             ccEEEEecCCCCCCCCeeecCCCCCHhHHHHHHHHHHHHHHHHcCcccccccCCCc-chhHHhhhhccCCCCCCCCCCCC
Q 008331          411 STGHLRLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDV-SVQELIDLMVNIPTNLRPRHVVG  489 (570)
Q Consensus       411 s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~  489 (570)
                      |||+|+|.++||.+.|.|+++|+.+|.|++.+.++++.+++++++..+..+...+. +..++....+..+.+..|+. .+
T Consensus       426 SrG~V~L~ssdp~~~P~i~~ny~~~p~Dl~~~~~g~r~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~  504 (587)
T PLN02785        426 STGHLSLINTNVDDNPSVTFNYFKHPQDLQRCVYGIRTIEKIVKTNHFTNFTQCDKQTMEKVLNMSVKANINLIPKH-TN  504 (587)
T ss_pred             cceEEEecCCCCCcCCccccccCCCHHHHHHHHHHHHHHHHHHcChhhhhhccccccccccccccccccccccCCCC-CC
Confidence            99999999999999999999999999999999999999999999988877653321 11112111122223344553 46


Q ss_pred             CHHHHHHHHHhcccccccccccccCCcccCCCCeEeccCCceEeeccCCCCCCCCchHHHHHHHHHHHHHHhhccccC
Q 008331          490 ASISLEQFCRDTVMTIWHYHGGCQVDRVVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLGRYMGLRILQDRDR  567 (570)
Q Consensus       490 ~~~~i~~~~~~~~~~~~H~~GTc~MG~VVD~~~rv~g~~nL~V~DaSv~P~~~~~NP~lTi~Ala~r~a~~i~~~~~~  567 (570)
                      +++++++|+++...+.||++|||+||+|||+++||||++||||||+|+||..|++||++|+||||+|+|++|++++++
T Consensus       505 ~d~~l~~~ir~~~~t~~H~~GTc~MG~VVD~~lrV~GV~~LRVvDaSi~P~~p~~np~atv~miaer~A~~Il~~~~~  582 (587)
T PLN02785        505 DTKSLEQFCKDTVITIWHYHGGCHVGKVVDQNYKVLGVSRLRVIDGSTFDESPGTNPQATVMMMGRYMGVKILRERLG  582 (587)
T ss_pred             CHHHHHHHHHHhcccccCCcccccCCCeECCCCeEeccCCeEEeecccCCCCCCCccHHHHHHHHHHHHHHHHHHhhh
Confidence            888999999999999999999999999999999999999999999999999999999999999999999999999875

>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]

Probab=100.00  E-value=2.4e-82  Score=653.54  Aligned_cols=506  Identities=39%  Similarity=0.563  Sum_probs=382.3

Q ss_pred             eeecccCCCCCCcccEEEECCCCchhHHHHhhhc--cCeEEEEccCCCCCCCCCcccccc----cccccCCCCCCCCCcc
Q 008331           29 FVKDATSAPLISYYDYIIVGGGTSGCPLAATLSQ--NATVLLLEKGGSPYENPNITDTGN----FATTLLDPSPTSPSQQ  102 (570)
Q Consensus        29 ~~~~~~~~~~~~~~DvIIVGsG~aG~~~A~~La~--g~~VlvLE~G~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~  102 (570)
                      ++.+....+...+||+||||||.|||++|.+|+|  ..||||||+|+...   ...++..    +.....+|.|.+.++.
T Consensus        45 ~~~~~~~~~~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~~---~~~~~p~~~~~~q~s~~dw~y~t~Ps~  121 (623)
T KOG1238|consen   45 RPSDATGSELDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDPP---LYSDPPLLAANLQLSLYDWSYHTEPSQ  121 (623)
T ss_pred             ccccccccccccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCCc---ccccchHHHHHhccccccccCcCccCh
Confidence            3344444456779999999999999999999999  69999999998762   1222222    2223447888877766


Q ss_pred             c----ccCCcccccCCceeccccccCceeeeCCCh----hhhhh--CCCChhhhhhhhHHHHhhccCCCC----------
Q 008331          103 F----ISEDGVYNARARVLGGGSVINAGFYTRASL----RYVRE--VGWTESLVNSSYEWVEKKVAHEPP----------  162 (570)
Q Consensus       103 ~----~~~~~~~~~~g~~lGG~s~~~~~~~~r~~~----~~~~~--~gw~~~~l~~~~~~~~~~~~~~~~----------  162 (570)
                      .    ..++...++|||++||+|.+|+|+|.|+.+    +|.+.  +||+|+++.+||+|.|+.....++          
T Consensus       122 ~ac~~m~~~~c~wpRGrVLGGsS~iN~m~Y~RG~r~Dyd~W~~~gnpgW~y~~vl~yf~k~E~~~~~~~~~~~y~~~~g~  201 (623)
T KOG1238|consen  122 HACLAMSEDRCYWPRGRVLGGSSVLNAMFYVRGNRRDYDRWAAEGNPGWSYDEVLPYFKKSEDKVVPDPELTPYHGAGGP  201 (623)
T ss_pred             hhhhhhcCCceecCccceecccccccceEEecCCccchHHHHHhcCCCCCHHHHHHHHHHHhhccCCCcccCcccccCCc
Confidence            5    778889999999999999999999999995    44433  579999999999999987654433          


Q ss_pred             --------CcchHHHHHHHHHHcCCCCCCCCCcCCCCcceeeee---EECCCCccccHHH-hhh-h-cCCCCeEEEecce
Q 008331          163 --------MLQWQSAVRDGLLEAGVLPYNGFTFDHIYGTKVSGT---IFDEDGHRHSAAD-LLE-Y-ADPEKLTVYLRAV  228 (570)
Q Consensus       163 --------~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~---~~~~~g~r~~~~~-~l~-~-~~~~g~~i~~~~~  228 (570)
                              ..+....+.++..++|...+     |..+..+.+..   ....+|.|+++.. |+. . ..++|+++..++.
T Consensus       202 ~~ve~~~~~~~~~~~~~~ag~e~G~~~~-----D~nG~~~tg~~~l~~t~~~g~R~s~~~a~l~~~~~~R~NL~~~~~~~  276 (623)
T KOG1238|consen  202 LLVEAGVYPNNLFTAFHRAGTEIGGSIF-----DRNGERHTGASLLQYTIRNGIRVSLAKAYLKPIRLTRPNLHISRNAA  276 (623)
T ss_pred             ceeccccccCchhhHhHHhHHhcCCCcc-----CCCCccccchhhhhccccCCEEEEehhhhhhhhhccCccccccccce
Confidence                    23445677788888884321     11122222211   1125788877655 665 3 3478999999999


Q ss_pred             EEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHHhCCCChhhhhhcCCcccccCCccC
Q 008331          229 VQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVG  308 (570)
Q Consensus       229 V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGiG~~~~l~~~gi~~~~~~p~VG  308 (570)
                      |++|.+|..+   +++.||++....|+.++++    +.|+|||+||+|+||+|||+|||||+++|++.||+++.++|.||
T Consensus       277 vtrvl~D~~~---~~a~gv~~~~~~~~~~~v~----a~kEVILSAGAi~SPQLLMLSGIGP~~~L~~~gIpvv~dLP~VG  349 (623)
T KOG1238|consen  277 VTRVLIDPAG---KRAKGVEFVRDGGKEHTVK----ARKEVILSAGAINSPQLLMLSGIGPADHLKKLGIPVVLDLPGVG  349 (623)
T ss_pred             EEEEEEcCCC---ceEEEEEEEecCceeeeec----ccceEEEeccccCCHHHHHHcCCCcHHHHHhcCCCeeccCcccc
Confidence            9999999654   4999999985337888888    89999999999999999999999999999999999999999999


Q ss_pred             cccccCCCceeeeccCCcccchhhhhhcccchhhhHhhhcCCccCcCccccccccccccccc--cCCCCCC---------
Q 008331          309 QGMSDNPMNALFVPSARPVEVSLVQVVGITRFDSYIETASGLSLAPSWAQGLTRDYSSFLNK--TDIPSLV---------  377 (570)
Q Consensus       309 ~~l~dh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---------  377 (570)
                      +|||||+...++...+.+......+...+.....|+...+|+....+ .    ...+++...  ..+..++         
T Consensus       350 ~nLqDH~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~G~~~~~~-~----e~~~f~~t~~~~~~~~~PD~~~~~~~~  424 (623)
T KOG1238|consen  350 QNLQDHPMNPGFVFSTNPVELSLIRLVGITTVGQYLEGGSGPLASPG-V----ETLGFINTVSSNLSLDWPDIELHFVAG  424 (623)
T ss_pred             cccccccccceeeecCCCccccccccccchHHHHHHHcCCCCcccCc-c----eeeEEeccccccCcCCCCCeeEEeccc
Confidence            99999999988777766655555555555666677777666554422 0    001111110  0000000         


Q ss_pred             --ChH---HHHHHhH-hhhccCC--CceeeEEEEeecccccccEEEEecCCCCCCCCeeecCCCCCHhHHHHHHHHHHHH
Q 008331          378 --TPE---TVAEAVE-TVNSYLN--GTIRAGVIVEKIMGPRSTGHLRLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTI  449 (570)
Q Consensus       378 --~~~---~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~p~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~  449 (570)
                        ..+   .+..... .......  .....+.++..+.+|.|+|+|.|.++||.+.|+|++||+.+|+|++.+.++++.+
T Consensus       425 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~l~P~SrG~l~L~s~nP~~~P~I~~NY~~~p~Dv~~~vegi~~~  504 (623)
T KOG1238|consen  425 SLSSDGLTALRKALGEIYQALFGELTNSDSFVIFPKLLRPKSRGRLKLRSTNPRDNPLITPNYFTHPEDVATLVEGIRTI  504 (623)
T ss_pred             cccccchhhhhhhcchHHHHhhhhhhcCceeEEeehhcCCCccceEEecCCCCCcCceeccCcCCCHHHHHHHHHHHHHH
Confidence              000   0000000 0000110  1112466778899999999999999999999999999999999999999999999


Q ss_pred             HHHHcCcccccccCCCcchhHHhhhhccCCCCCCCCC---CCCCHHHHHHHHHhcccccccccccccCC------cccCC
Q 008331          450 IDVLNSRALSKFRYPDVSVQELIDLMVNIPTNLRPRH---VVGASISLEQFCRDTVMTIWHYHGGCQVD------RVVDR  520 (570)
Q Consensus       450 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~~i~~~~~~~~~~~~H~~GTc~MG------~VVD~  520 (570)
                      .++.++.+|+++......             ...|+.   ...+|+++++|+|....|.||++|||+||      +|||+
T Consensus       505 ~~l~~s~af~~~~~r~~~-------------~~~~~c~~~~~~sd~yw~c~~R~~~~TiyH~~GtckMGp~~D~~aVVD~  571 (623)
T KOG1238|consen  505 IRLSNSKAFQRFGARLWK-------------KPVPGCDLLAFLSDAYWECFCRHTVVTIYHYSGTCKMGPSSDPTAVVDP  571 (623)
T ss_pred             HHHHcCHHHHHhcchhcc-------------ccCCCcccccCCCHHHHHHHHHhccceeeccCCceEeCCccCCCcccCC
Confidence            999999999988766521             012222   26789999999999999999999999999      89999


Q ss_pred             CCeEeccCCceEeeccCCCCCCCCchHHHHHHHHHHHHHHhhccccC
Q 008331          521 DYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLGRYMGLRILQDRDR  567 (570)
Q Consensus       521 ~~rv~g~~nL~V~DaSv~P~~~~~NP~lTi~Ala~r~a~~i~~~~~~  567 (570)
                      ++||||++||||+|||+||.+|++||++|+||||||+||.|++++..
T Consensus       572 ~lrV~Gv~~LRVVDaSimP~~psgN~nA~v~MIgek~ad~Ik~~~~~  618 (623)
T KOG1238|consen  572 QLRVHGVRGLRVVDASIMPESPSGNPNAPVMMIGEKAADMIKEEWLA  618 (623)
T ss_pred             cceeccccCceEeeccccCCCCCCCccHHHHHHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999999999999999988887653

>PRK02106 choline dehydrogenase; Validated

Probab=100.00  E-value=9.4e-74  Score=621.21  Aligned_cols=491  Identities=27%  Similarity=0.364  Sum_probs=349.6

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc--cCeEEEEccCCCCC-CCCCccccccccc----ccCCCCCCCCCcccccCCcccc
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ--NATVLLLEKGGSPY-ENPNITDTGNFAT----TLLDPSPTSPSQQFISEDGVYN  111 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~--g~~VlvLE~G~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  111 (570)
                      .++|||||||||++|+++|.+|+|  |.+|||||+|+... .......+..+..    ...+|.|.+.+++...++.+.+
T Consensus         3 ~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~   82 (560)
T PRK02106          3 TMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKRYNWAYETEPEPHMNNRRMEC   82 (560)
T ss_pred             CCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCcccCCCcceeCcHHHHHhcCCCceeeceecccCCCCCCCeeec
Confidence            457999999999999999999999  89999999997532 2222223321111    1124556666666666677888


Q ss_pred             cCCceeccccccCceeeeCCChhhhhh-------CCCChhhhhhhhHHHHhhccC-------------C---CCCcchHH
Q 008331          112 ARARVLGGGSVINAGFYTRASLRYVRE-------VGWTESLVNSSYEWVEKKVAH-------------E---PPMLQWQS  168 (570)
Q Consensus       112 ~~g~~lGG~s~~~~~~~~r~~~~~~~~-------~gw~~~~l~~~~~~~~~~~~~-------------~---~~~~~~~~  168 (570)
                      .+|++|||+|.+|++++.|+.+.+++.       .+|+|++++|||+++|+...-             .   ....+..+
T Consensus        83 ~~g~~lGGsS~iN~~~~~R~~~~Dfd~w~~~~g~~~Ws~~~l~py~~k~E~~~~~~~~~~g~~gp~~~~~~~~~~~~~~~  162 (560)
T PRK02106         83 PRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAETRDGGEDDYRGGDGPLSVTRGKPGTNPLFQ  162 (560)
T ss_pred             ccccccCCCCCccceEEecCCHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCCCccccCCCCCEEEeCCCCCCCHHHH
Confidence            999999999999999999999965442       479999999999999986521             0   11234466


Q ss_pred             HHHHHHHHcCCCCCCCCCcCCCCcceeeeeEECCCCccccHHH-hhh-hcCCCCeEEEecceEEEEEecCCCCCCCeEEE
Q 008331          169 AVRDGLLEAGVLPYNGFTFDHIYGTKVSGTIFDEDGHRHSAAD-LLE-YADPEKLTVYLRAVVQRIKFTETGRAKPTAHC  246 (570)
Q Consensus       169 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~-~l~-~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~G  246 (570)
                      .+.++++++|++...........++......| .+|.|.++.. |++ ..++.|++|++++.|++|+++++     +++|
T Consensus       163 ~~~~a~~~lG~~~~~~~~~~~~~g~~~~~~~~-~~g~R~s~~~~~l~~a~~~~nl~i~~~a~V~rI~~~~~-----~a~G  236 (560)
T PRK02106        163 AFVEAGVQAGYPRTDDLNGYQQEGFGPMDRTV-TNGRRWSAARAYLDPALKRPNLTIVTHALTDRILFEGK-----RAVG  236 (560)
T ss_pred             HHHHHHHHcCCCcCCCCCCCCCceeEEEeeec-CCCEEEChHHHhhccccCCCCcEEEcCCEEEEEEEeCC-----eEEE
Confidence            78889999998654322211112222111222 4778877765 776 44578999999999999999854     9999


Q ss_pred             EEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHHhCCCChhhhhhcCCcccccCCccCcccccCCCceeeeccCCc
Q 008331          247 VTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMNALFVPSARP  326 (570)
Q Consensus       247 V~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGiG~~~~l~~~gi~~~~~~p~VG~~l~dh~~~~~~~~~~~~  326 (570)
                      |++.+.++ ...+.    ++|+||||||+|+||+|||+|||||+++|+++||+++.++|.||+||+||+...+.+..+.+
T Consensus       237 V~~~~~~~-~~~~~----~ak~VILaaGai~TP~LLl~SGIG~~~~L~~~gI~~~~dlP~VG~NL~dH~~~~~~~~~~~~  311 (560)
T PRK02106        237 VEYERGGG-RETAR----ARREVILSAGAINSPQLLQLSGIGPAEHLKELGIPVVHDLPGVGENLQDHLEVYIQYECKQP  311 (560)
T ss_pred             EEEEeCCc-EEEEE----eeeeEEEccCCCCCHHHHhhcCCCChHHHHhcCCceEeeCCCCCcChhhCccceEEEEeCCC
Confidence            99986544 33443    68999999999999999999999999999999999999999999999999998887766554


Q ss_pred             ccchh-hhhhc-ccchhhhHhhhcCCccCcCccccccccccccccccCCCCCCChHH----HHHHhHhhhccCCCceeeE
Q 008331          327 VEVSL-VQVVG-ITRFDSYIETASGLSLAPSWAQGLTRDYSSFLNKTDIPSLVTPET----VAEAVETVNSYLNGTIRAG  400 (570)
Q Consensus       327 ~~~~~-~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~  400 (570)
                      ..... ...+. ......|.....|......     ....++....   .....+..    ....+....... .....+
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-----~~~~~~~~~~---~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~  382 (560)
T PRK02106        312 VSLYPALKWWNKPKIGAEWLFTGTGLGASNH-----FEAGGFIRSR---AGVDWPNIQYHFLPVAIRYDGSNA-VKGHGF  382 (560)
T ss_pred             cccccccchhhhhHHHHHHHhcCCCCccccc-----cceeeEEecC---CCCCCCCeEEEEeeccccccCCCC-CCCCeE
Confidence            32100 00000 0001122221222110000     0000000000   00000000    000000000000 001122


Q ss_pred             EEEeecccccccEEEEecCCCCCCCCeeecCCCCCHhHHHHHHHHHHHHHHHHcCcccccccCCCcchhHHhhhhccCCC
Q 008331          401 VIVEKIMGPRSTGHLRLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLMVNIPT  480 (570)
Q Consensus       401 ~~~~~~~~p~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  480 (570)
                      .+...+..|.|+|+|+|+++|+++.|.|+++|+.++.|++++.++++++++++++++++.+...+               
T Consensus       383 ~~~~~~~~P~srG~V~L~s~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~---------------  447 (560)
T PRK02106        383 QAHVGPMRSPSRGSVKLKSADPRAHPSILFNYMSTEQDWREFRDAIRLTREIMAQPALDPYRGRE---------------  447 (560)
T ss_pred             EEEEEecCCcceEEEEEeCCCCccCceEccccCCCHHHHHHHHHHHHHHHHHHcChhhhhccccc---------------
Confidence            33345668999999999999999999999999999999999999999999999988777664333               


Q ss_pred             CCCCCCCCCCHHHHHHHHHhcccccccccccccCC----cccCCCCeEeccCCceEeeccCCCCCCCCchHHHHHHHHHH
Q 008331          481 NLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVD----RVVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLGRY  556 (570)
Q Consensus       481 ~~~p~~~~~~~~~i~~~~~~~~~~~~H~~GTc~MG----~VVD~~~rv~g~~nL~V~DaSv~P~~~~~NP~lTi~Ala~r  556 (570)
                       ..|+...++++++++|+++...+++|++||||||    +|||++|||||++||||+|+||||+.+++||++|+||+|+|
T Consensus       448 -~~p~~~~~~~~~~~~~i~~~~~~~~H~~GTcrMG~d~~sVVD~~~rV~Gv~nLrVvDaSv~P~~~~~np~~ti~aiaer  526 (560)
T PRK02106        448 -ISPGADVQTDEEIDAFVREHAETAYHPSCTCKMGTDPMAVVDPEGRVHGVEGLRVVDASIMPTITNGNLNAPTIMIAEK  526 (560)
T ss_pred             -cCCCcccCCHHHHHHHHHhccCcCcccCCCeecCCCCCeeECCCCEEeccCCeEEeeccccCCCCCcchHHHHHHHHHH
Confidence             4566556788999999999988899999999999    79999999999999999999999999999999999999999


Q ss_pred             HHHHhhccc
Q 008331          557 MGLRILQDR  565 (570)
Q Consensus       557 ~a~~i~~~~  565 (570)
                      +||+|+++.
T Consensus       527 aAd~I~~~~  535 (560)
T PRK02106        527 AADLIRGRT  535 (560)
T ss_pred             HHHHHhccC
Confidence            999988754

>TIGR01810 betA choline dehydrogenase

Probab=100.00  E-value=2.8e-73  Score=614.38  Aligned_cols=487  Identities=27%  Similarity=0.365  Sum_probs=347.2

Q ss_pred             cEEEECCCCchhHHHHhhhc-c-CeEEEEccCCCCCC-CCCcccccccc----cccCCCCCCCCCcccccCCcccccCCc
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-N-ATVLLLEKGGSPYE-NPNITDTGNFA----TTLLDPSPTSPSQQFISEDGVYNARAR  115 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g-~~VlvLE~G~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~  115 (570)
                      ||||||||+||+++|.+|+| + .||||||+|+.... ......+..+.    ....+|.|.+.++....++.+.+.+|+
T Consensus         1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~   80 (532)
T TIGR01810         1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWIYETEPEPHMNNRRVGHARGK   80 (532)
T ss_pred             CEEEECCCchHHHHHHHhccCCCCeEEEEecCCCCCCCCcceeCcHHHHHhcCCCCcceeeEcccCCCCCCceEeeeccc
Confidence            89999999999999999999 7 79999999985321 22222332111    111246666667777777788899999


Q ss_pred             eeccccccCceeeeCCChhhhh---h----CCCChhhhhhhhHHHHhhccCC---------------CCCcchHHHHHHH
Q 008331          116 VLGGGSVINAGFYTRASLRYVR---E----VGWTESLVNSSYEWVEKKVAHE---------------PPMLQWQSAVRDG  173 (570)
Q Consensus       116 ~lGG~s~~~~~~~~r~~~~~~~---~----~gw~~~~l~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~  173 (570)
                      +|||+|.+|+++|.|+.+.+++   .    .+|+|+++++||+++|......               +...+..+.+.++
T Consensus        81 ~lGGss~in~~~~~R~~~~d~~~w~~~~g~~~W~~~~l~py~~~~E~~~~~~~~~~g~~G~~~v~~~~~~~~~~~~~~~a  160 (532)
T TIGR01810        81 VLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYADCLPYYKRLETTFGGEKPYRGHDGPIKVRRGPADNPLFQAFIEA  160 (532)
T ss_pred             ccCCCCCEeeeEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCCCcccCCCCCCEEEecCCCCCHHHHHHHHH
Confidence            9999999999999999996433   2    4799999999999999865411               1123446778889


Q ss_pred             HHHcCCCCCCCCCcCCCCcceeeeeEECCCCccccHHH-hhhhc-CCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEe
Q 008331          174 LLEAGVLPYNGFTFDHIYGTKVSGTIFDEDGHRHSAAD-LLEYA-DPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYD  251 (570)
Q Consensus       174 ~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~-~l~~~-~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~  251 (570)
                      ++++|++...........++......| .+|.|+++.. |++.+ ++.|++|+++++|++|+++++     +++||++.+
T Consensus       161 ~~~~G~~~~~~~~~~~~~g~~~~~~~~-~~g~r~s~~~~~l~~a~~r~nl~i~~~~~V~rI~~~~~-----ra~GV~~~~  234 (532)
T TIGR01810       161 GVEAGYNKTPDVNGFRQEGFGPMDSTV-HNGRRVSAARAYLHPAMKRPNLEVQTRAFVTKINFEGN-----RATGVEFKK  234 (532)
T ss_pred             HHHcCCCccCCCCCCCccceEEEEEEc-CCCEEEcHHHHHhhhhccCCCeEEEeCCEEEEEEecCC-----eEEEEEEEe
Confidence            999998654332211111222212222 4778887765 77644 478999999999999999854     999999985


Q ss_pred             cCCceEEEEecCCCCceEEEcCCccccHHHHHHhCCCChhhhhhcCCcccccCCccCcccccCCCceeeeccCCcccc-h
Q 008331          252 HVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMNALFVPSARPVEV-S  330 (570)
Q Consensus       252 ~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGiG~~~~l~~~gi~~~~~~p~VG~~l~dh~~~~~~~~~~~~~~~-~  330 (570)
                       .+....+.    ++|+||||||+|+||+||++|||||+++|+++||+++.++|.||+|||||+...+.+.++.+... .
T Consensus       235 -~~~~~~~~----~ak~VIlaAGai~SP~LLl~SGIG~~~~L~~~gI~~~~~lp~VG~nL~DH~~~~~~~~~~~~~~~~~  309 (532)
T TIGR01810       235 -GGRKEHTE----ANKEVILSAGAINSPQLLQLSGIGDAEHLRELGIEPRIHLPGVGENLQDHLEVYVQHACKQPVSLYP  309 (532)
T ss_pred             -CCcEEEEE----EeeeEEEccCCCCCHHHHHhcCCCCHHHHHhcCCCeEeeCCccccchhhcccceeEEEecCCccccc
Confidence             34434444    68999999999999999999999999999999999999999999999999998888776544211 0


Q ss_pred             hhhhhc-ccchhhhHhhhcCCccCcCccccccccccccccccCCCCCCChHHHHHHhH---hhhccCCCceeeEEEEeec
Q 008331          331 LVQVVG-ITRFDSYIETASGLSLAPSWAQGLTRDYSSFLNKTDIPSLVTPETVAEAVE---TVNSYLNGTIRAGVIVEKI  406 (570)
Q Consensus       331 ~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  406 (570)
                      ....+. ......|.....+......+.     ..++....   .....++....+..   ............+.+....
T Consensus       310 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~~~~---~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (532)
T TIGR01810       310 SLNWLKQPFIGAQWLFGRKGAGASNHFE-----GGGFVRSN---DDVDYPNIQYHFLPVAIRYDGTKAPKAHGFQVHVGP  381 (532)
T ss_pred             ccchhhhhHHHHHHHhcCCCCccccccc-----eeEEEecC---CCCCCCCeEEEEEeeeeccCCCCCCCCCcEEEEEee
Confidence            000000 000011222112211110000     00000000   00000000000000   0000000001112333455


Q ss_pred             ccccccEEEEecCCCCCCCCeeecCCCCCHhHHHHHHHHHHHHHHHHcCcccccccCCCcchhHHhhhhccCCCCCCCCC
Q 008331          407 MGPRSTGHLRLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLMVNIPTNLRPRH  486 (570)
Q Consensus       407 ~~p~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  486 (570)
                      ..|.|||+|+|+++|+.+.|.|+++|+.++.|++.++++++.++++++++.+..+...+                ..|+.
T Consensus       382 ~~P~srG~V~L~s~dp~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~----------------~~p~~  445 (532)
T TIGR01810       382 MYSNSRGHVKIKSKDPFEKPEIVFNYMSHEEDWREFREAIRVTREILKQKALDPYRGGE----------------ISPGP  445 (532)
T ss_pred             cCCCCceEEEecCCCCccCceeccccCCCHHHHHHHHHHHHHHHHHHcCcchhhccccc----------------cCCCC
Confidence            67999999999999999999999999999999999999999999999988777664333                45555


Q ss_pred             CCCCHHHHHHHHHhcccccccccccccCC------cccCCCCeEeccCCceEeeccCCCCCCCCchHHHHHHHHHHHHHH
Q 008331          487 VVGASISLEQFCRDTVMTIWHYHGGCQVD------RVVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLGRYMGLR  560 (570)
Q Consensus       487 ~~~~~~~i~~~~~~~~~~~~H~~GTc~MG------~VVD~~~rv~g~~nL~V~DaSv~P~~~~~NP~lTi~Ala~r~a~~  560 (570)
                      ..++++++++|+++...+.+|++||||||      +|||+++||||++||||||+||||+.+++||++|+||+|+|+||+
T Consensus       446 ~~~~d~~~~~~ir~~~~~~~H~~GTcrMG~~~~~~~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~n~~~t~~aiaeraAd~  525 (532)
T TIGR01810       446 EVQTDEEIDEFVRRHGETALHPCGTCKMGPASDEMSVVDPETRVHGMEGLRVVDASIMPRITNGNLNAPVIMMGEKAADI  525 (532)
T ss_pred             CCCCHHHHHHHHhhhcccccccccceeCCCcccCCCccCCCCeEeccCCcEEeeeccCCCCCCCccHHHHHHHHHHHHHH
Confidence            56889999999999999999999999999      499999999999999999999999999999999999999999999


Q ss_pred             hhcc
Q 008331          561 ILQD  564 (570)
Q Consensus       561 i~~~  564 (570)
                      |+++
T Consensus       526 I~~~  529 (532)
T TIGR01810       526 IRGK  529 (532)
T ss_pred             Hhcc
Confidence            9875

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=100.00  E-value=3.4e-66  Score=553.85  Aligned_cols=490  Identities=27%  Similarity=0.334  Sum_probs=360.8

Q ss_pred             CCCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCCCCCccccccccccc----CCCCCCCCCcccccCCccccc
Q 008331           38 LISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYENPNITDTGNFATTL----LDPSPTSPSQQFISEDGVYNA  112 (570)
Q Consensus        38 ~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~  112 (570)
                      ...+||+||||||.+|+++|.+|++ |.+|||||+|+..... ....+..+....    .+|.|.+.++++...+.+.+.
T Consensus         4 ~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~~~~~~-~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~   82 (542)
T COG2303           4 MKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGGPDRRP-LIQMPAAYAFLMNGPRYDWGFRTEPEPHLRGRELAWP   82 (542)
T ss_pred             ccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCCCCCcc-ceecchhHhhhccCcccCCccccCcccCCCCcccccc
Confidence            4678999999999999999999999 9999999999743211 223333333322    247777878888888899999


Q ss_pred             CCceeccccccCceeeeCCChhhhhh-------CCCChhhhhhhhHHHHhhccCC--------C-----------CCcch
Q 008331          113 RARVLGGGSVINAGFYTRASLRYVRE-------VGWTESLVNSSYEWVEKKVAHE--------P-----------PMLQW  166 (570)
Q Consensus       113 ~g~~lGG~s~~~~~~~~r~~~~~~~~-------~gw~~~~l~~~~~~~~~~~~~~--------~-----------~~~~~  166 (570)
                      +|++|||+|.+|++++.|+++.+|+.       .+|+|++++|||+++|+.....        .           ...++
T Consensus        83 rgk~lGGsS~ing~~~~R~~~~Df~~w~~~~G~~~W~y~d~lPyf~~aE~~~~~~g~~~~~~~g~~gp~~~~~~~~~~~~  162 (542)
T COG2303          83 RGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYDDVLPYFKRAEDLLGVGGQDLRTWHGGGGPLPVSPPRSPNPI  162 (542)
T ss_pred             ccCcccchhhhccceeecCCHHHHHHHHhhcCCCCCCccccHHHHHHHHhhcCCCCCCCCCCcCCCCCccccCCCCchHH
Confidence            99999999999999999999976532       4699999999999999855431        1           11345


Q ss_pred             HHHHHHHHHHcCCCCCCCCCcCCCCcceeeeeEECCCCccccHHH-hhh-hcCCCCeEEEecceEEEEEecCCCCCCCeE
Q 008331          167 QSAVRDGLLEAGVLPYNGFTFDHIYGTKVSGTIFDEDGHRHSAAD-LLE-YADPEKLTVYLRAVVQRIKFTETGRAKPTA  244 (570)
Q Consensus       167 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~-~l~-~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v  244 (570)
                      ...+.++..++|++..+.+......++...+..+ .+|.|+++.. |++ +.+++|++|++++.|++|+++++     |+
T Consensus       163 ~~a~~~a~~~~G~~~~~~~~~~~~~g~g~~~~~~-~~g~r~sa~~a~l~~a~~~~nl~v~t~a~v~ri~~~~~-----r~  236 (542)
T COG2303         163 ARAFIEAGEQLGFPTTPDPNGADQEGFGPYCVTI-CNGRRWSAARAYLKPALKRPNLTLLTGARVRRILLEGD-----RA  236 (542)
T ss_pred             HHHHHHHHHHcCCCcCcccccCCCCCcccceeec-cCCeEeechhhcchhHhcCCceEEecCCEEEEEEEECC-----ee
Confidence            6777888888898755433222222222222222 3788887765 665 57889999999999999999988     99


Q ss_pred             EEEEEEecCCc-eEEEEecCCCCceEEEcCCccccHHHHHHhCCCChhhhhhcCCcccccCCccCcccccCCCceeeecc
Q 008331          245 HCVTFYDHVGA-RHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMNALFVPS  323 (570)
Q Consensus       245 ~GV~~~~~~G~-~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGiG~~~~l~~~gi~~~~~~p~VG~~l~dh~~~~~~~~~  323 (570)
                      +||++...++. .....    ++++||||||+|+||+|||+||||+.+.+...|+.++.++|.||+|||||....+.+..
T Consensus       237 ~gv~~~~~~~~~~~~~~----a~~~viL~AGai~Sp~LL~~Sgig~~~~~~~~g~~~v~~~~~vg~nl~dH~~~~~~~~~  312 (542)
T COG2303         237 VGVEVEIGDGGTIETAV----AAREVVLAAGAINSPKLLLLSGIGPADHLLEHGIDVVGRLPGVGQNLQDHLEIYVAFEA  312 (542)
T ss_pred             EEEEEEeCCCCceEEEe----cCceEEEeccccCCHHHHHhcCCCchhhhhhcCCeeeecCcchhHHHHhhhhhhhheec
Confidence            99999854442 23333    78999999999999999999999999999999999999999999999999988877765


Q ss_pred             CCcccchhhhhhcccc--hhhhHhhhcCCccCcCccccccccccccccccCCCCCCChHHHHHHhHhhh--ccCCCceee
Q 008331          324 ARPVEVSLVQVVGITR--FDSYIETASGLSLAPSWAQGLTRDYSSFLNKTDIPSLVTPETVAEAVETVN--SYLNGTIRA  399 (570)
Q Consensus       324 ~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  399 (570)
                      +.+.............  ...|.....|.....      ....++...   .+....++... ++....  .........
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~------~~~~gf~~~---~~~~~~p~~~~-~~~~~~~~~~~~~~~~~  382 (542)
T COG2303         313 TEPTNDSVLSLFSKLGIGADRYLLTRDGPGATN------HFEGGFVRS---GPAGEYPDGQY-HFAPLPLAIRAAGAEHG  382 (542)
T ss_pred             cCccccccccccccccccceeEEeecCCCcccc------ccccccccc---CccccCCCccc-ccccccccccccccCCc
Confidence            5443111110000000  011222122211100      001111100   01111111111 110000  001112234


Q ss_pred             EEEEeecccccccEEEEecCCCCCCCCeeecCCCCCHhHHHHHHHHHHHHHHHHcCcccccccCCCcchhHHhhhhccCC
Q 008331          400 GVIVEKIMGPRSTGHLRLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLMVNIP  479 (570)
Q Consensus       400 ~~~~~~~~~p~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  479 (570)
                      .++.....+|.|+|.|++++.|+...|.|+.+|..++.|++.+..+++..++++.+..+..+...+              
T Consensus       383 ~~~~~~~~rp~srg~v~~~~~d~~~~p~i~~~~~~~~~d~~~~~~~~~~~r~i~~~~~~~~~~~~e--------------  448 (542)
T COG2303         383 FTLHVGPMRPKSRGSVTLRSPDPDNRPVIDPNYLSAEGDRAIFRAGIRLTREIIGQPALDARRKAE--------------  448 (542)
T ss_pred             cEEeeccCCCccccceecCCCCCcCCcccCccccCchhHHHHHHHHHHHHHHHhcCccchhhHHHh--------------
Confidence            455666789999999999999999999999999999999999999999999999876666655444              


Q ss_pred             CCCCCCCCCCCHHHHHHHHHhcccccccccccccCC-----cccCCCCeEeccCCceEeeccCCCCCCCCchHHHHHHHH
Q 008331          480 TNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVD-----RVVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLG  554 (570)
Q Consensus       480 ~~~~p~~~~~~~~~i~~~~~~~~~~~~H~~GTc~MG-----~VVD~~~rv~g~~nL~V~DaSv~P~~~~~NP~lTi~Ala  554 (570)
                        ..|+...+++++|.+|++....+.+|++||||||     +|+|++|||||++||||+|+|+||+++++||++||+|||
T Consensus       449 --~~~~~~~~~~~~~~~~~~~~~~t~~H~~GT~rMG~Dp~~~V~d~~lrv~g~~nL~VvDaSvmPt~~~~Np~~ti~ala  526 (542)
T COG2303         449 --LAPGPRVTTDEDISAAIRFLARTAYHPMGTCRMGSDPAAVVDDPYLRVHGLENLRVVDASVMPTSTGVNPNLTIIALA  526 (542)
T ss_pred             --hcCCCccccHHHHHHHHHhccCccccccccccCCCCchhhccccccccccCCCeEEeCcccCcCccCCCccHhHHHHH
Confidence              5777778899999999999999999999999999     355599999999999999999999999999999999999


Q ss_pred             HHHHHHhhcc
Q 008331          555 RYMGLRILQD  564 (570)
Q Consensus       555 ~r~a~~i~~~  564 (570)
                      +|+||+|+++
T Consensus       527 ~raA~~I~~~  536 (542)
T COG2303         527 ERAADHILGD  536 (542)
T ss_pred             HHHHHHHhhc
Confidence            9999999874

>TIGR02462 pyranose_ox pyranose oxidase

Probab=100.00  E-value=6.5e-50  Score=421.57  Aligned_cols=467  Identities=19%  Similarity=0.172  Sum_probs=280.5

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCCCCCcc----------cccccc----cccCCCC-C-------CC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYENPNIT----------DTGNFA----TTLLDPS-P-------TS   98 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~~~~~~----------~~~~~~----~~~~~~~-~-------~~   98 (570)
                      |||||||+|++|+++|+.|++ |+||+|||+|..........          ....+.    ..+...+ +       +.
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLKIGAHKKNEIEYQKDIDKFVNVIKGALQSVSVPVSNLVIPTL   80 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCcccccccccccccccHHHHHHHHhhhccccccccccCCcCCC
Confidence            799999999999999999999 99999999998764311000          000110    0111000 0       00


Q ss_pred             CC--------cccccC------C---ccc-ccCCceeccccccCceeeeCCChhhhh--hCCCC--hhhhhhhhHHHHhh
Q 008331           99 PS--------QQFISE------D---GVY-NARARVLGGGSVINAGFYTRASLRYVR--EVGWT--ESLVNSSYEWVEKK  156 (570)
Q Consensus        99 ~~--------~~~~~~------~---~~~-~~~g~~lGG~s~~~~~~~~r~~~~~~~--~~gw~--~~~l~~~~~~~~~~  156 (570)
                      .+        ..++.+      +   .+. ..+-+.|||+|.+|++.+.|.+++...  ..+||  +++|+|||+++|+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~R~vGGsS~hW~g~~~R~~p~~r~g~~~dWPI~y~eL~PyY~~Ae~~  160 (544)
T TIGR02462        81 DPTAWSASIESFFVSNGKNPEQDPFRNLSGEAVTRGVGGMSTHWTCATPRFHREERPKLSDDAAEDDAEWDRLYTKAESL  160 (544)
T ss_pred             CccccccCCCcceecCCCCcccCchhccChhheeeccCchhhhcCcccCCCCHHhccCCCCCCCCCHHHHHHHHHHHHHH
Confidence            00        001100      0   111 345678999999999999999985322  14687  59999999999999


Q ss_pred             ccCCCCCc--ch--HHHHHHHHHHc-CC-CCCCCCCcCCCCcceeeeeEECCCCccccHH-Hhhh-----hcCCCCeEEE
Q 008331          157 VAHEPPML--QW--QSAVRDGLLEA-GV-LPYNGFTFDHIYGTKVSGTIFDEDGHRHSAA-DLLE-----YADPEKLTVY  224 (570)
Q Consensus       157 ~~~~~~~~--~~--~~~~~~~~~~~-G~-~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~-~~l~-----~~~~~g~~i~  224 (570)
                      +++.+...  +.  ...+....++. |. +..+.    .. .|...  .| ..+.+++.. ..++     .+...|++|+
T Consensus       161 ~gv~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~----Pl-A~~~~--~c-~~~ak~s~~~t~~~~~~~~~~~~~n~~l~  232 (544)
T TIGR02462       161 IGTSTDQFDESIRHNLVLRKLQDEYKGQRDFQPL----PL-ACHRR--TD-PTYVEWHSADTVFDLQPNDDAPSERFTLL  232 (544)
T ss_pred             hCCCCCcCCCcccchhHHHHHHHHhccccccccC----ch-hhhcc--CC-CccceecCCccchhhhhhhhccCCCEEEE
Confidence            98776421  11  11111112222 22 11110    00 01110  01 123333321 2222     2246789999


Q ss_pred             ecceEEEEEecCCCCCCCeEEEEEEEec-CCceEEEEecCCCCceEEEcCCccccHHHHHHhCCCChhhhhhcCCccccc
Q 008331          225 LRAVVQRIKFTETGRAKPTAHCVTFYDH-VGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVD  303 (570)
Q Consensus       225 ~~~~V~~i~~~~~~~~~~~v~GV~~~~~-~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGiG~~~~l~~~gi~~~~~  303 (570)
                      +++.|++|++|+++  +.+|++|++.|. +|+.++++     ||.||||||+|+||+|||+|+++...  .+.|+.  ++
T Consensus       233 ~~a~v~~i~~d~~~--~~~v~~v~~~d~~~g~~~~v~-----A~~vVLAagaIetpRLLL~S~~~~~~--~p~gl~--Ns  301 (544)
T TIGR02462       233 TNHRCTRLVRNETN--ESEIEAALVRDLLSGDRFEIK-----ADVYVLACGAVHNPQILVNSGFGQLG--RPDPTN--PP  301 (544)
T ss_pred             cCCEEEEEEeCCCC--CceeEEEEEEECCCCcEEEEE-----CCEEEEccCchhhHHHHHhCCCCCCc--CCCCcC--CC
Confidence            99999999998642  128999999986 57777775     78999999999999999999987422  233443  32


Q ss_pred             --CCccCcccccCCCceeeeccCCcccchhhhhhcccchhhhHhhhcCCccCcCcccccccccc-ccccccCCCCCC--C
Q 008331          304 --QPNVGQGMSDNPMNALFVPSARPVEVSLVQVVGITRFDSYIETASGLSLAPSWAQGLTRDYS-SFLNKTDIPSLV--T  378 (570)
Q Consensus       304 --~p~VG~~l~dh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~  378 (570)
                        ++.|||||+||+...+.+.++++....+......  .+.|............ .......+. .....+.+....  +
T Consensus       302 s~~g~VGRnlmdh~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~w  378 (544)
T TIGR02462       302 PLLPSLGRYITEQSMTFCQIVLSTELVDSVRSDPRG--LDWWKEKVANHMMKHP-EDPLPIPFRDPEPQVTTPFTEEHPW  378 (544)
T ss_pred             CCCCCCCcchhcCCCccEEEEecchhhhhccCCccc--cccccccchhhhcccc-CCcccccccccCccccccccccccc
Confidence              4899999999999877776665431111000000  0000000000000000 000000000 000000000000  0


Q ss_pred             hHHH-HHHhH--hh-hccC-CCceeeEEEEeecccccccEEEEecC--CCCCCCCeeecCCCCCHhHHHHHHHHHHHHHH
Q 008331          379 PETV-AEAVE--TV-NSYL-NGTIRAGVIVEKIMGPRSTGHLRLRT--LDADDNPSVTFNYFQEPEDLVRCVQGMRTIID  451 (570)
Q Consensus       379 ~~~~-~~~~~--~~-~~~~-~~~~~~~~~~~~~~~p~s~g~v~l~~--~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~  451 (570)
                      .... ...+.  .. .... .....+..+.+.+  |..+++|+|++  +|.++.|.++++|..+++|.+.+..+++.+.+
T Consensus       379 ~~~~~~~~~~~g~~~~~~~~~~~v~l~~~~e~l--P~~~NrV~Ld~~~~D~~G~P~~~i~~~~~~~d~~~~~~~~~~~~~  456 (544)
T TIGR02462       379 HTQIHRDAFSYGAVGPSIDSRVIVDLRFFGRTE--PKEENKLVFQDKVTDTYNMPQPTFDFRFSAADSKRARRMMTDMCN  456 (544)
T ss_pred             chhhhhhhhhcccccccccccceeeEEEEeccC--CCCCCeEEcCCCCcCCCCCeeEEEEEeCCHHHHHHHHHHHHHHHH
Confidence            0000 00000  00 0000 1112334455666  66678899975  59999999999999999999999999999999


Q ss_pred             HHcCcccccccCCCcchhHHhhhhccCCCCCCCCCCCCCHHHHHHHHHhcccccccccccccCC-----cccCCCCeEec
Q 008331          452 VLNSRALSKFRYPDVSVQELIDLMVNIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVD-----RVVDRDYKVLG  526 (570)
Q Consensus       452 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~H~~GTc~MG-----~VVD~~~rv~g  526 (570)
                      +++.++.....  .                 .+           .+.  ....+.|++||||||     +|||++|||||
T Consensus       457 i~~~~G~~~~~--~-----------------~~-----------~~~--~~~~~~H~~Gt~rMG~dp~~sVvd~~~rv~g  504 (544)
T TIGR02462       457 VAAKIGGYLPG--S-----------------LP-----------QFM--EPGLALHLAGTTRIGFDEQTTVANTDSKVHN  504 (544)
T ss_pred             HHHHcCCCccc--c-----------------cc-----------ccc--CCCccccCCCCeecCCCCCCceECCCCcEeC
Confidence            98876532110  0                 00           000  112478999999999     79999999999


Q ss_pred             cCCceEeeccCCCCCCCCchHHHHHHHHHHHHHHhhcc
Q 008331          527 VDGLRVIDGSTFYNSPGTNPQATCMMLGRYMGLRILQD  564 (570)
Q Consensus       527 ~~nL~V~DaSv~P~~~~~NP~lTi~Ala~r~a~~i~~~  564 (570)
                      ++||||+|+|+||+.+++||++|+||||+|+|++|+++
T Consensus       505 ~~NL~V~d~s~~Pt~~~~nPtlTi~ala~r~a~~i~~~  542 (544)
T TIGR02462       505 FKNLYVGGNGNIPTAFGANPTLTSMCYAIKSAEYIINN  542 (544)
T ss_pred             CCCeEEeccCcCCCCCCCCcHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999865

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=100.00  E-value=2.7e-43  Score=354.18  Aligned_cols=263  Identities=35%  Similarity=0.481  Sum_probs=182.5

Q ss_pred             ccEEEECCCCchhHHHHhhhc-c-CeEEEEccCCCCCCCCCccccccccccc---CCCCCCCCCcccccCCcccccCCce
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-N-ATVLLLEKGGSPYENPNITDTGNFATTL---LDPSPTSPSQQFISEDGVYNARARV  116 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g-~~VlvLE~G~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~  116 (570)
                      |||||||||++|+++|.+|++ + .+|||||+|+...... ...........   .++.+.+.++.....+.+.+.+|++
T Consensus         1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~   79 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPED-STPPSSFYQDFDSEYDWGYYSGPQPFLNGRTINWPRGKG   79 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTSG-HHGGGGGGGCTTTTTBBGEEECEEECTTTTSEEEEEB-S
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCcccc-chhhhccccccCcccccccccccccccccceeeeeccee
Confidence            899999999999999999999 6 7999999999765433 10011111111   1233334445555666777889999


Q ss_pred             eccccccCceeeeCCChhhhhh-------CCCChhhhhhhhHHHHhhc-------------cC---CCCCcchHHHHHHH
Q 008331          117 LGGGSVINAGFYTRASLRYVRE-------VGWTESLVNSSYEWVEKKV-------------AH---EPPMLQWQSAVRDG  173 (570)
Q Consensus       117 lGG~s~~~~~~~~r~~~~~~~~-------~gw~~~~l~~~~~~~~~~~-------------~~---~~~~~~~~~~~~~~  173 (570)
                      |||+|.+|++++.|+.+.++++       .+|+|+++++||+++|...             .+   .+...+....+.++
T Consensus        80 lGGsS~in~~~~~R~~~~df~~w~~~~g~~~w~~~~l~~~~~~~e~~~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~a  159 (296)
T PF00732_consen   80 LGGSSAINGGVYFRPSPSDFDEWAREFGADGWSWDDLEPYYDKAETFLGPSSDLHGVDGPLPVSSSPPYPSPMNQALMDA  159 (296)
T ss_dssp             TTGGGGTS--BE-B--HHHHHHHHHTTTCTTGSHHHHHHHHHHHEEEHTTBGGGSCBSSSEEEHHHCSCHCTHHHHHHHH
T ss_pred             cCCcccccccccccCCcccchhhhhcccccccchhhHHHHHHHHHhhccccccccccccccccccccCCCCHHHHHHHHH
Confidence            9999999999999999965442       3588999999999999332             22   12234456788899


Q ss_pred             HHHcCCCCCCCCCcCCCCcceeeeeE-ECCCCccccHHH-hhh-hcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEE
Q 008331          174 LLEAGVLPYNGFTFDHIYGTKVSGTI-FDEDGHRHSAAD-LLE-YADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFY  250 (570)
Q Consensus       174 ~~~~G~~~~~~~~~~~~~~~~~~~~~-~~~~g~r~~~~~-~l~-~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~  250 (570)
                      +.++|++....  ...+..+..+... ...+|.|+++.. ||+ +.++.|++|+++++|++|+++.++   .+++||++.
T Consensus       160 ~~~~G~~~~~~--~~~~~~~g~~~~~~~~~~g~r~s~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~---~~a~gV~~~  234 (296)
T PF00732_consen  160 AEELGIPVPQD--FNGCDPCGFCMTGFNCPNGARSSAATTYLPPALKRPNLTLLTNARVTRIIFDGDG---GRATGVEYV  234 (296)
T ss_dssp             HHHTTHHBCSC--TTSSTCSEEEECEECECTTCBBHHHHHHHHHHTTTTTEEEEESEEEEEEEEETTS---TEEEEEEEE
T ss_pred             HHHcCCccccc--cccccccccccccccccchhceehhhcccchhhccCCccEEcCcEEEEEeeeccc---cceeeeeee
Confidence            99999862211  1112222222222 125788887654 776 455669999999999999996332   399999999


Q ss_pred             ecCCc-eEEEEecCCCCceEEEcCCccccHHHHHHhCCCChhhhhhcCCcccccCCccCcccccCC
Q 008331          251 DHVGA-RHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNP  315 (570)
Q Consensus       251 ~~~G~-~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGiG~~~~l~~~gi~~~~~~p~VG~~l~dh~  315 (570)
                      +.++. ...+.    ++|+||||||+|+||+|||+||||+.++|+++||++++++| ||+||||||
T Consensus       235 ~~~~~~~~~~~----~ak~VIlaAGai~Tp~LLl~SGiG~~~~L~~~gi~~~~~lp-VG~nl~dH~  295 (296)
T PF00732_consen  235 DNDGGVQRRIV----AAKEVILAAGAIGTPRLLLRSGIGPKDHLDALGIPVVVDLP-VGRNLQDHP  295 (296)
T ss_dssp             ETTTSEEEEEE----EEEEEEE-SHHHHHHHHHHHTTEE-HHHHHHTTHHHSEE-T-TTECEB--E
T ss_pred             ecCCcceeeec----cceeEEeccCCCCChhhhcccccccHHHHHHcCCCceeeCc-chhchhccc
Confidence            87776 33333    68999999999999999999999999999999999999999 999999997

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PF05199 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR007867 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=99.98  E-value=8.2e-33  Score=247.07  Aligned_cols=139  Identities=32%  Similarity=0.544  Sum_probs=110.5

Q ss_pred             ccccEEEEecCCCCCCCCeeecCCCCCHhHHHHHHHHHHHHHHHHcCcccccccCCCcchhHHhhhhccCCCCCCCCCCC
Q 008331          409 PRSTGHLRLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLMVNIPTNLRPRHVV  488 (570)
Q Consensus       409 p~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  488 (570)
                      |.|+|+|+|+++|+++.|.|+++|+.+++|++.+.++++.+++++++. ++++...+..         ..+....+....
T Consensus         1 P~S~G~V~L~~~d~~~~p~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~-~~~~~~~~~~---------~~~~~~~~~~~~   70 (144)
T PF05199_consen    1 PKSRGRVTLDSSDPFGQPLIDPNYLSDPRDLEALREGIKRARRILRAA-FEEIGAGELL---------PGPSPFCPDASL   70 (144)
T ss_dssp             -SS-BEEEESSSSTTSEEEEE--TTSSHHHHHHHHHHHHHHHHHHTSG-GGGTEEEEEE---------SCGCSCCGCSTT
T ss_pred             CCCCcEEEeCCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHHHHHHhhh-hccccccccc---------cccccccccccc
Confidence            789999999999999999999999999999999999999999999988 5544321100         000001222235


Q ss_pred             CCHHHHHHHHHhcccccccccccccCC-----cccCCCCeEeccCCceEeeccCCCCCCCCchHHHHHHHHHHH
Q 008331          489 GASISLEQFCRDTVMTIWHYHGGCQVD-----RVVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLGRYM  557 (570)
Q Consensus       489 ~~~~~i~~~~~~~~~~~~H~~GTc~MG-----~VVD~~~rv~g~~nL~V~DaSv~P~~~~~NP~lTi~Ala~r~  557 (570)
                      .+++++++|+++...+.+|++||||||     +|||++|||||++||||+|+|+||+.+++||++|+||||+|+
T Consensus        71 ~~~~~~~~~~~~~~~~~~H~~Gt~~mG~~~~~~VvD~~~rv~g~~nL~V~DaSv~P~~~~~np~~t~~ala~ra  144 (144)
T PF05199_consen   71 DSDEDLECYIRQNVGTSWHPSGTCRMGPDPDTSVVDPDLRVHGVRNLRVADASVFPTSPGANPTLTIMALAERA  144 (144)
T ss_dssp             TCHHHHHHHHHHHGEECSS-BETT-BTSSTTTTSB-TTSBBTTSBSEEE-SGGGSSS-SSSSSHHHHHHHHHHH
T ss_pred             ccchhhhhheeeccceecccccceeccccCCceeECCCCCeeeeeeEEECCCCcCCCCCCcCcHHHHHHHeeCC
Confidence            788899999999999999999999999     999999999999999999999999999999999999999996

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. The function of this C-terminal conserved domain is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0055114 oxidation-reduction process; PDB: 3BG7_F 2IGM_D 3BLY_A 3BG6_H 3LSK_A 2IGO_A 3K4B_A 3K4L_B 2IGN_B 3K4M_H ....

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=99.63  E-value=1.4e-14  Score=155.65  Aligned_cols=190  Identities=19%  Similarity=0.232  Sum_probs=107.5

Q ss_pred             CCCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCCCCCcccccccccccCCCCCCCCCcccccCCcccccCCce
Q 008331           38 LISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYENPNITDTGNFATTLLDPSPTSPSQQFISEDGVYNARARV  116 (570)
Q Consensus        38 ~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  116 (570)
                      .+.++||||||+|.+|+++|.++++ |++|+||||.+..                                         
T Consensus        58 ~~~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~-----------------------------------------   96 (506)
T PRK06481         58 LKDKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVA-----------------------------------------   96 (506)
T ss_pred             ccccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC-----------------------------------------
Confidence            3468999999999999999999999 9999999998643                                         


Q ss_pred             eccccccCceeeeCCChhhhhhCCCChhhhhhhhHHHHhhccCCCCCcch------HHHHHHHHHHcCCCCCCCCCcCCC
Q 008331          117 LGGGSVINAGFYTRASLRYVREVGWTESLVNSSYEWVEKKVAHEPPMLQW------QSAVRDGLLEAGVLPYNGFTFDHI  190 (570)
Q Consensus       117 lGG~s~~~~~~~~r~~~~~~~~~gw~~~~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~G~~~~~~~~~~~~  190 (570)
                       ||+|...++.+......+....+.. +..+.+|++..+......+....      .....+++.+.|++... ....  
T Consensus        97 -GG~s~~s~Gg~~~~~~~~~~~~g~~-d~~~~~~~~~~~~~~~~~d~~l~~~~~~~s~~~i~wl~~~Gv~~~~-~~~~--  171 (506)
T PRK06481         97 -GGNTMKASSGMNASETKFQKAQGIA-DSNDKFYEETLKGGGGTNDKALLRYFVDNSASAIDWLDSMGIKLDN-LTIT--  171 (506)
T ss_pred             -CCcccccCCccccCChHHHHhcCCC-CCHHHHHHHHHHhcCCCCCHHHHHHHHhccHHHHHHHHHcCceEee-cccC--
Confidence             3433333333322222222222221 22233444433221111111000      12345677777764211 0000  


Q ss_pred             CcceeeeeEECCCCccc---cHHHhhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCc
Q 008331          191 YGTKVSGTIFDEDGHRH---SAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKN  267 (570)
Q Consensus       191 ~~~~~~~~~~~~~g~r~---~~~~~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~  267 (570)
                      .+........+.++...   ....+...+++.|++|+++++|++|+.+++     +|+||.+...+|+..++.     ++
T Consensus       172 ~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g-----~V~Gv~~~~~~g~~~~i~-----a~  241 (506)
T PRK06481        172 GGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKIPLFVNADVTKITEKDG-----KVTGVKVKINGKETKTIS-----SK  241 (506)
T ss_pred             CCCCCCceeccCCCCCChHHHHHHHHHHHHHcCCeEEeCCeeEEEEecCC-----EEEEEEEEeCCCeEEEEe-----cC
Confidence            11101011111122111   112244556678999999999999987654     899999876555555564     79


Q ss_pred             eEEEcCCccccHHHHH
Q 008331          268 EIILSAGAIGSPQLLM  283 (570)
Q Consensus       268 ~VVLaaGa~~tp~LLl  283 (570)
                      .||||+|+|..+.-++
T Consensus       242 ~VVlAtGG~~~n~~m~  257 (506)
T PRK06481        242 AVVVTTGGFGANKDMI  257 (506)
T ss_pred             eEEEeCCCcccCHHHH
Confidence            9999999987654433

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.62  E-value=1.1e-14  Score=157.71  Aligned_cols=63  Identities=10%  Similarity=0.129  Sum_probs=49.2

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHH
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLML  284 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~  284 (570)
                      +...+++.|++|+++++|++|+.+++     +|+||.+.+ +|+.+.++    ++|.||||+|+|+...-|+.
T Consensus       223 L~~~~~~~Gv~i~~~t~v~~Li~~~g-----~V~GV~~~~-~g~~~~i~----a~kaVILAtGGf~~n~em~~  285 (564)
T PRK12845        223 LFAGVLRAGIPIWTETSLVRLTDDGG-----RVTGAVVDH-RGREVTVT----ARRGVVLAAGGFDHDMEMRW  285 (564)
T ss_pred             HHHHHHHCCCEEEecCEeeEEEecCC-----EEEEEEEEE-CCcEEEEE----cCCEEEEecCCccccHHHHH
Confidence            34456678999999999999997643     999998874 66666665    77899999999986654443

>PRK07121 hypothetical protein; Validated

Probab=99.58  E-value=4.5e-14  Score=151.80  Aligned_cols=194  Identities=17%  Similarity=0.183  Sum_probs=110.5

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCCCCCcccccccccccCCCCCCCCCcccccCCcccccCCcee
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYENPNITDTGNFATTLLDPSPTSPSQQFISEDGVYNARARVL  117 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l  117 (570)
                      +.++||||||+|.+|+++|.+|++ |++|+||||.+.                                          +
T Consensus        18 ~~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~------------------------------------------~   55 (492)
T PRK07121         18 DDEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAG------------------------------------------A   55 (492)
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCC------------------------------------------C
Confidence            468999999999999999999999 999999999863                                          3


Q ss_pred             ccccccCceeeeCC-ChhhhhhCCCChhhhhhhhHHHHhhccCCCCCcch------HHHHHHHHHHcCCCCCCCCCc---
Q 008331          118 GGGSVINAGFYTRA-SLRYVREVGWTESLVNSSYEWVEKKVAHEPPMLQW------QSAVRDGLLEAGVLPYNGFTF---  187 (570)
Q Consensus       118 GG~s~~~~~~~~r~-~~~~~~~~gw~~~~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~G~~~~~~~~~---  187 (570)
                      ||+|.+.++.+.-+ ...++...+.. ++.+.+++++.+..+...+....      .....+++.+.|++.......   
T Consensus        56 gG~s~~sgG~~~~~~g~~~q~~~g~~-d~~~~~~~~~~~~~~~~~d~~l~~~~~~~s~~~i~wl~~~Gv~f~~~~~~~~~  134 (492)
T PRK07121         56 GGATALSGGVIYLGGGTAVQKAAGFE-DSPENMYAYLRVAVGPGVDEEKLRRYCEGSVEHFDWLEGLGVPFERSFFPEKT  134 (492)
T ss_pred             CCcccccCeEEEeCCCcHHHHhcCCC-CCHHHHHHHHHHHhCCCCCHHHHHHHHHccHHHHHHHHHcCcEEEeccCCCcc
Confidence            55555555544332 22222222322 22233333333222222111111      123445667777632110000   


Q ss_pred             --C------CCCc----c---------eeeeeEECCCC----ccccHHHhhhhcCCCCeEEEecceEEEEEecCCCCCCC
Q 008331          188 --D------HIYG----T---------KVSGTIFDEDG----HRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKP  242 (570)
Q Consensus       188 --~------~~~~----~---------~~~~~~~~~~g----~r~~~~~~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~  242 (570)
                        +      ...+    .         ...... ...+    .+.....+...+++.|++|+++++|++|+.++++    
T Consensus       135 ~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g----  209 (492)
T PRK07121        135 SYPPNDEGLYYSGNEKAWPFAEIAKPAPRGHRV-QGPGDSGGGAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDG----  209 (492)
T ss_pred             cCCCCCcccccchhhcchhhhhccCCcccceec-CCCCCCCchHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCC----
Confidence              0      0000    0         000000 0011    1111122445677789999999999999998654    


Q ss_pred             eEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHHh
Q 008331          243 TAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLS  285 (570)
Q Consensus       243 ~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~S  285 (570)
                      +++||++.+ +++.+.++    ++|.||||+|++...+-|++.
T Consensus       210 ~v~Gv~~~~-~~~~~~i~----a~k~VVlAtGg~~~N~em~~~  247 (492)
T PRK07121        210 RVVGVEARR-YGETVAIR----ARKGVVLAAGGFAMNREMVAR  247 (492)
T ss_pred             CEEEEEEEe-CCcEEEEE----eCCEEEECCCCcCcCHHHHHH
Confidence            899999974 56666665    449999999999865555543

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.56  E-value=6.4e-14  Score=152.60  Aligned_cols=61  Identities=11%  Similarity=0.133  Sum_probs=49.1

Q ss_pred             hhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHH
Q 008331          214 EYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLM  283 (570)
Q Consensus       214 ~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl  283 (570)
                      +.+++.|++|+++++|++|+.|+++    +|+||.+. .+|+.+.++    +++.||||+|+|+...-|+
T Consensus       221 ~~~~~~gv~i~~~~~~~~Li~d~~g----~V~Gv~~~-~~~~~~~i~----a~~aVilAtGGf~~N~em~  281 (584)
T PRK12835        221 LALKDAGVPLWLDSPMTELITDPDG----AVVGAVVE-REGRTLRIG----ARRGVILATGGFDHDMDWR  281 (584)
T ss_pred             HHHHhCCceEEeCCEEEEEEECCCC----cEEEEEEE-eCCcEEEEE----eceeEEEecCcccCCHHHH
Confidence            4567789999999999999998655    99999997 477766776    5678999999998644444

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=99.55  E-value=3.4e-14  Score=149.97  Aligned_cols=187  Identities=23%  Similarity=0.257  Sum_probs=102.2

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCCCCCcccccccccccCCCCCCCCCcccccCCcccccCCceecccc
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYENPNITDTGNFATTLLDPSPTSPSQQFISEDGVYNARARVLGGGS  121 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lGG~s  121 (570)
                      ||||||+|.||+++|.+|++ |.+|+||||++.                                          +||++
T Consensus         1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~------------------------------------------~gg~~   38 (417)
T PF00890_consen    1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPR------------------------------------------LGGSS   38 (417)
T ss_dssp             SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSG------------------------------------------GGSGG
T ss_pred             CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecc------------------------------------------ccccc
Confidence            89999999999999999999 999999999963                                          35555


Q ss_pred             ccCceeeeCCChhhhhhCCCChhhhhhhhHHHHhhccCCCCCcch-------HHHHHHHHHHcCCCCCC----CCCcCCC
Q 008331          122 VINAGFYTRASLRYVREVGWTESLVNSSYEWVEKKVAHEPPMLQW-------QSAVRDGLLEAGVLPYN----GFTFDHI  190 (570)
Q Consensus       122 ~~~~~~~~r~~~~~~~~~gw~~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~G~~~~~----~~~~~~~  190 (570)
                      ...++.+.-.........+- .+..+.++.+..+......+ .++       .....+++.+.|++...    .+.....
T Consensus        39 ~~s~g~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~  116 (417)
T PF00890_consen   39 AFSSGGFDAAGTPPQREAGI-EDSPEEFFQDIMAAGGGLND-PDLVRAFVENSPEAIDWLEELGVPFRRDEDGPFAPTPF  116 (417)
T ss_dssp             GGTCSEEEESSSHSSHHTTT-TCHHHHHHHHHHHHTTT-S--HHHHHHHHHHHHHHHHHHHHTT--B-BGTTSSBCEEEE
T ss_pred             ccccCceeeecccccccccc-cccccccceeeecccccccc-cchhhhhhhcccceehhhhhhccccccccccccccccc
Confidence            55555444433222111111 12233344444333322221 111       23355677777764221    0000011


Q ss_pred             Ccceee-eeEE-CCCC-------ccccHHHhhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEe-cCCceEEEE
Q 008331          191 YGTKVS-GTIF-DEDG-------HRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYD-HVGARHRAC  260 (570)
Q Consensus       191 ~~~~~~-~~~~-~~~g-------~r~~~~~~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~-~~G~~~~v~  260 (570)
                      ...... .... ..+.       .......+...+++.|++|+++++|++|+.+++     +|+||++.+ .+|+.++++
T Consensus       117 g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g-----~V~Gv~~~~~~~g~~~~i~  191 (417)
T PF00890_consen  117 GGHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAEEAGVDIRFNTRVTDLITEDG-----RVTGVVAENPADGEFVRIK  191 (417)
T ss_dssp             TTESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHHHTTEEEEESEEEEEEEEETT-----EEEEEEEEETTTCEEEEEE
T ss_pred             CCccccceeeeccccccccccccHHHHHHHHHHHHhhcCeeeeccceeeeEEEeCC-----ceeEEEEEECCCCeEEEEe
Confidence            111111 1111 1111       011111244466778899999999999999876     999999984 467777775


Q ss_pred             ecCCCCceEEEcCCccccHHHHHH
Q 008331          261 LNNGGKNEIILSAGAIGSPQLLML  284 (570)
Q Consensus       261 ~~~~aa~~VVLaaGa~~tp~LLl~  284 (570)
                           ++.||||+|+|.. .++.+
T Consensus       192 -----A~aVIlAtGG~~~-~~~~~  209 (417)
T PF00890_consen  192 -----AKAVILATGGFGG-ELLRQ  209 (417)
T ss_dssp             -----ESEEEE----BGG-HHHHH
T ss_pred             -----eeEEEeccCcccc-ccccc
Confidence                 5699999999998 44443

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.54  E-value=9.6e-14  Score=150.65  Aligned_cols=63  Identities=13%  Similarity=0.185  Sum_probs=50.4

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHH
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLML  284 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~  284 (570)
                      +.+.+++.|++|+++++|++|+.+++     +|+||++.. +|+.+.++    +++.||||+|+|....-|+.
T Consensus       214 l~~~~~~~gv~i~~~~~v~~Li~~~g-----~v~Gv~~~~-~g~~~~i~----A~~aVIlAtGG~~~N~em~~  276 (557)
T PRK12844        214 MLEAALAAGVPLWTNTPLTELIVEDG-----RVVGVVVVR-DGREVLIR----ARRGVLLASGGFGHNAEMRK  276 (557)
T ss_pred             HHHHHHhCCCEEEeCCEEEEEEEeCC-----EEEEEEEEE-CCeEEEEE----ecceEEEecCCccCCHHHHH
Confidence            34466778999999999999998765     999999974 67666675    56799999999987555543

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=99.54  E-value=9.2e-14  Score=148.66  Aligned_cols=196  Identities=17%  Similarity=0.146  Sum_probs=110.2

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCCCCCcccccccccccCCCCCCCCCcccccCCcccccCCcee
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYENPNITDTGNFATTLLDPSPTSPSQQFISEDGVYNARARVL  117 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l  117 (570)
                      ..++||||||+|.+|+++|.+|++ |.+|+||||++..                                        ..
T Consensus         2 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~----------------------------------------~~   41 (466)
T PRK08274          2 ASMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPRE----------------------------------------WR   41 (466)
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCc----------------------------------------CC
Confidence            356899999999999999999999 9999999998631                                        12


Q ss_pred             ccccccCceeeeCCChhhhhhCCCChhhhhhhhHHHHhhccCCCCCcch------HHHHHHHHHHcCCCCCCCCCcCCCC
Q 008331          118 GGGSVINAGFYTRASLRYVREVGWTESLVNSSYEWVEKKVAHEPPMLQW------QSAVRDGLLEAGVLPYNGFTFDHIY  191 (570)
Q Consensus       118 GG~s~~~~~~~~r~~~~~~~~~gw~~~~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~G~~~~~~~~~~~~~  191 (570)
                      ||+|.+.+++........ +... ..+..+.++++..+..+...+....      .....+++.+.|++.....  ....
T Consensus        42 GG~s~~s~G~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~--~~~~  117 (466)
T PRK08274         42 GGNSRHTRNLRCMHDAPQ-DVLV-GAYPEEEFWQDLLRVTGGRTDEALARLLIRESSDCRDWMRKHGVRFQPPL--SGAL  117 (466)
T ss_pred             CcccccCCceeeeCCCch-hhcc-ccccHHHHHHHHHHhhCCCCCHHHHHHHHHcCHHHHHHHHhCCceEeecC--CCcc
Confidence            444444333211111100 0000 0011222333333322211111000      1234566777776421100  0000


Q ss_pred             cceeeeeEECCCCccccHHHhhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEE
Q 008331          192 GTKVSGTIFDEDGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIIL  271 (570)
Q Consensus       192 ~~~~~~~~~~~~g~r~~~~~~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVL  271 (570)
                      ......... ..+.......+...+++.|++++++++|++|+.+++     +++||.+.+.+|+...++     ++.|||
T Consensus       118 ~~~~~~~~~-~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g-----~v~gv~~~~~~g~~~~i~-----a~~VIl  186 (466)
T PRK08274        118 HVARTNAFF-WGGGKALVNALYRSAERLGVEIRYDAPVTALELDDG-----RFVGARAGSAAGGAERIR-----AKAVVL  186 (466)
T ss_pred             ccCCCCeee-cCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCC-----eEEEEEEEccCCceEEEE-----CCEEEE
Confidence            000000111 111111122245566778999999999999998754     899999865566666664     689999


Q ss_pred             cCCccccHHHHHHhCCCC
Q 008331          272 SAGAIGSPQLLMLSGVGP  289 (570)
Q Consensus       272 aaGa~~tp~LLl~SGiG~  289 (570)
                      |+|++..++.|+..-.++
T Consensus       187 AtGg~~~n~~~~~~~~~~  204 (466)
T PRK08274        187 AAGGFESNREWLREAWGQ  204 (466)
T ss_pred             CCCCCCCCHHHHHhhcCC
Confidence            999999988888765543

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=99.53  E-value=2.3e-13  Score=146.53  Aligned_cols=62  Identities=15%  Similarity=0.177  Sum_probs=47.7

Q ss_pred             hhhh-cCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHH
Q 008331          212 LLEY-ADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLM  283 (570)
Q Consensus       212 ~l~~-~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl  283 (570)
                      ++.. .++.|++|+++++|++|+.+++     +|+||++.. +|+.+.++    ++|.||||||+|+..+-|+
T Consensus       179 l~~~~~~~~gv~i~~~t~~~~Li~~~g-----~v~Gv~~~~-~g~~~~i~----A~k~VIlAtGG~~~n~~m~  241 (513)
T PRK12837        179 FLAALARFPNARLRLNTPLVELVVEDG-----RVVGAVVER-GGERRRVR----ARRGVLLAAGGFEQNDDMR  241 (513)
T ss_pred             HHHHHHhCCCCEEEeCCEEEEEEecCC-----EEEEEEEEE-CCcEEEEE----eCceEEEeCCCccCCHHHH
Confidence            4443 3446999999999999998754     999999864 67766776    6679999999997544443

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=99.51  E-value=4e-13  Score=146.05  Aligned_cols=193  Identities=19%  Similarity=0.174  Sum_probs=104.8

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCCCCCcccccccccccCCCCCCCCCcccccCCcccccCCcee
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYENPNITDTGNFATTLLDPSPTSPSQQFISEDGVYNARARVL  117 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l  117 (570)
                      ..++||||||+|.+|+++|..+++ |++|+||||++..                                        .+
T Consensus         2 ~~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~----------------------------------------~~   41 (549)
T PRK12834          2 AMDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEA----------------------------------------NL   41 (549)
T ss_pred             CccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCC----------------------------------------CC
Confidence            357999999999999999999999 9999999999721                                        23


Q ss_pred             ccccccCceeeeCCChhhhhhCCCChhhhhhhhHHHHhhccCCCCCcc----h--------HHHHHHHHHHcCCCCCCCC
Q 008331          118 GGGSVINAGFYTRASLRYVREVGWTESLVNSSYEWVEKKVAHEPPMLQ----W--------QSAVRDGLLEAGVLPYNGF  185 (570)
Q Consensus       118 GG~s~~~~~~~~r~~~~~~~~~gw~~~~l~~~~~~~~~~~~~~~~~~~----~--------~~~~~~~~~~~G~~~~~~~  185 (570)
                      ||+|.+.++.+.-......+..+.. ++.+.++++..+......+...    +        .....+++.+.|++.....
T Consensus        42 GG~s~~s~Gg~~~~~~~~q~~~gi~-ds~e~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~e~i~wL~~~Gv~f~~~~  120 (549)
T PRK12834         42 GGQAFWSLGGLFLVDSPEQRRLGIK-DSLELALQDWLGSAGFDRPEDHWPRQWAEAYVDFAAGEKRSWLHSLGLRFFPVV  120 (549)
T ss_pred             CCceeccCCceeccCCHHHHhcCcc-cCHHHHHHHHHhccCCCCccccchHHHHHHHHHhCCHHHHHHHHHcCCeeEecC
Confidence            4555444443332322222222332 3344444444333222211111    0        1345567777887421110


Q ss_pred             C--cCC--C-C--cceeeeeEEC-CCCccccHHHhhhhc----CCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEec-
Q 008331          186 T--FDH--I-Y--GTKVSGTIFD-EDGHRHSAADLLEYA----DPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDH-  252 (570)
Q Consensus       186 ~--~~~--~-~--~~~~~~~~~~-~~g~r~~~~~~l~~~----~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~-  252 (570)
                      .  ...  . .  +......... ..|. .....+...+    ++.|++|++++++++|+.+++     +|+||++.+. 
T Consensus       121 ~~~~~~~~~~~~~~~~~~r~~~~~~~G~-~~~~~l~~~~~~~~~~~gv~i~~~t~~~~Li~~~g-----~V~Gv~~~~~~  194 (549)
T PRK12834        121 GWAERGGGDAGGHGNSVPRFHITWGTGP-GVVEPFERRVREAAARGLVRFRFRHRVDELVVTDG-----AVTGVRGTVLE  194 (549)
T ss_pred             CccccCCcccCCcccccCceecCCCCcH-HHHHHHHHHHHHHHHhCCceEEecCEeeEEEEeCC-----EEEEEEEEecc
Confidence            0  000  0 0  0000000000 0111 1111222222    345699999999999998754     9999997421 


Q ss_pred             -C------------CceEEEEecCCCCceEEEcCCccccHHHHH
Q 008331          253 -V------------GARHRACLNNGGKNEIILSAGAIGSPQLLM  283 (570)
Q Consensus       253 -~------------G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl  283 (570)
                       +            +..+.++     +|.||||+|+|+...=|+
T Consensus       195 ~~~~~~~~~~~~~~~~~~~i~-----AkaVILATGGf~~n~em~  233 (549)
T PRK12834        195 PSDAERGEASSREVVGEFELR-----AQAVIVTSGGIGGNHELV  233 (549)
T ss_pred             cccccccccccccccceEEEe-----cCEEEEeCCCcccCHHHH
Confidence             1            1234443     689999999998554333

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=99.47  E-value=3.8e-13  Score=142.79  Aligned_cols=63  Identities=19%  Similarity=0.250  Sum_probs=49.0

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHH
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLM  283 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl  283 (570)
                      +...+++.|++|+++++|++|+.++++    +++||++.+.+++.+.+     +++.||||+|++....-|+
T Consensus       136 l~~~~~~~gv~i~~~~~v~~l~~~~~g----~v~Gv~~~~~~g~~~~~-----~a~~VVlAtGg~~~n~~m~  198 (439)
T TIGR01813       136 LYKKAKKEGIDTRLNSKVEDLIQDDQG----TVVGVVVKGKGKGIYIK-----AAKAVVLATGGFGSNKEMI  198 (439)
T ss_pred             HHHHHHHcCCEEEeCCEeeEeEECCCC----cEEEEEEEeCCCeEEEE-----ecceEEEecCCCCCCHHHH
Confidence            445667789999999999999997654    89999998655654444     5799999999987644444

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK12839 hypothetical protein; Provisional

Probab=99.47  E-value=1.3e-12  Score=141.90  Aligned_cols=63  Identities=16%  Similarity=0.158  Sum_probs=49.3

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHH
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLM  283 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl  283 (570)
                      ++..+.+.|++|++++.|++|+.++++    +|+||.+.+.+|. ..+.    ++|.||||+|+|....-|+
T Consensus       220 L~~~a~~~Gv~i~~~t~v~~Li~~~~g----~V~GV~~~~~~g~-~~i~----aak~VVLAtGGf~~n~~~~  282 (572)
T PRK12839        220 LLRSADDLGVDLRVSTSATSLTTDKNG----RVTGVRVQGPDGA-VTVE----ATRGVVLATGGFPNDVDRR  282 (572)
T ss_pred             HHHHHHHCCCEEEcCCEEEEEEECCCC----cEEEEEEEeCCCc-EEEE----eCCEEEEcCCCcccCHHHH
Confidence            445667789999999999999987554    9999999866664 4444    6799999999998744443

>PRK06175 L-aspartate oxidase; Provisional

Probab=99.45  E-value=8.7e-13  Score=138.96  Aligned_cols=177  Identities=18%  Similarity=0.171  Sum_probs=96.3

Q ss_pred             CcccEEEECCCCchhHHHHhhhccCeEEEEccCCCCCCCCCcccccccccccCCCCCCCCCcccccCCcccccCCceecc
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQNATVLLLEKGGSPYENPNITDTGNFATTLLDPSPTSPSQQFISEDGVYNARARVLGG  119 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~g~~VlvLE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lGG  119 (570)
                      .++||||||+|.||+++|.++++|++|+||||++...+                                          
T Consensus         3 ~~~DVvVVG~G~AGl~AA~~a~~G~~V~lleK~~~~gg------------------------------------------   40 (433)
T PRK06175          3 LYADVLIVGSGVAGLYSALNLRKDLKILMVSKGKLNEC------------------------------------------   40 (433)
T ss_pred             ccccEEEECchHHHHHHHHHhccCCCEEEEecCCCCCC------------------------------------------
Confidence            57899999999999999999855999999999975332                                          


Q ss_pred             ccccCceeeeCCChhhhhhCCCChhhhhhhhHHHHhhccCCCCCcch------HHHHHHHHHHcCCCCCCCC---CcCCC
Q 008331          120 GSVINAGFYTRASLRYVREVGWTESLVNSSYEWVEKKVAHEPPMLQW------QSAVRDGLLEAGVLPYNGF---TFDHI  190 (570)
Q Consensus       120 ~s~~~~~~~~r~~~~~~~~~gw~~~~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~G~~~~~~~---~~~~~  190 (570)
                      +|.+..+......         +.++.+.|+++..+.-....+....      .....+++.+.|++.....   .+...
T Consensus        41 ~s~~a~ggi~~~~---------~~d~~~~~~~d~~~~g~~~~d~~lv~~~~~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~  111 (433)
T PRK06175         41 NTYLAQGGISVAR---------NKDDITSFVEDTLKAGQYENNLEAVKILANESIENINKLIDMGLNFDKDEKELSYTKE  111 (433)
T ss_pred             chHHHhHhheeCC---------CCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCCCceeeecc
Confidence            1111111110000         0122333444333222221111100      1234567777776421110   00000


Q ss_pred             CcceeeeeEECCCCc-cccHHHhhhhc-CCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCce
Q 008331          191 YGTKVSGTIFDEDGH-RHSAADLLEYA-DPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNE  268 (570)
Q Consensus       191 ~~~~~~~~~~~~~g~-r~~~~~~l~~~-~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~  268 (570)
                      .+..........+.. +.....++..+ ++.|++|+++++|++|+.+++     +++||.+.+ ++..+.++     +|.
T Consensus       112 g~~~~~r~~~~~~~~g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~-----~v~Gv~~~~-~g~~~~i~-----Ak~  180 (433)
T PRK06175        112 GAHSVNRIVHFKDNTGKKVEKILLKKVKKRKNITIIENCYLVDIIENDN-----TCIGAICLK-DNKQINIY-----SKV  180 (433)
T ss_pred             CccccCeEEecCCCChHHHHHHHHHHHHhcCCCEEEECcEeeeeEecCC-----EEEEEEEEE-CCcEEEEE-----cCe
Confidence            011111111111111 11122244444 356999999999999998765     899988764 55555554     699


Q ss_pred             EEEcCCcccc
Q 008331          269 IILSAGAIGS  278 (570)
Q Consensus       269 VVLaaGa~~t  278 (570)
                      ||||+|++..
T Consensus       181 VILAtGG~~~  190 (433)
T PRK06175        181 TILATGGIGG  190 (433)
T ss_pred             EEEccCcccc
Confidence            9999999764

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.45  E-value=2.2e-12  Score=140.25  Aligned_cols=63  Identities=11%  Similarity=0.123  Sum_probs=50.4

Q ss_pred             hhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHHh
Q 008331          213 LEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLS  285 (570)
Q Consensus       213 l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~S  285 (570)
                      .+.+++.|++|+++++|++|+.+++     +|+||++.. +|+.+.++    +++.||||+|+|...+-|+..
T Consensus       215 ~~~~~~~gv~v~~~t~v~~l~~~~g-----~v~Gv~~~~-~g~~~~i~----A~~~VIlAtGG~~~n~~m~~~  277 (557)
T PRK07843        215 RIGLQRAGVPVLLNTPLTDLYVEDG-----RVTGVHAAE-SGEPQLIR----ARRGVILASGGFEHNEQMRAK  277 (557)
T ss_pred             HHHHHcCCCEEEeCCEEEEEEEeCC-----EEEEEEEEe-CCcEEEEE----eceeEEEccCCcCcCHHHHHH
Confidence            3456678999999999999998754     999999874 67666665    556899999999987666554

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.45  E-value=1e-12  Score=144.52  Aligned_cols=196  Identities=18%  Similarity=0.203  Sum_probs=107.2

Q ss_pred             cceeeecccCCC-----CCCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCC-CCCcccccccccccCCCCCCC
Q 008331           26 YYTFVKDATSAP-----LISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYE-NPNITDTGNFATTLLDPSPTS   98 (570)
Q Consensus        26 ~~~~~~~~~~~~-----~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~-~~~~~~~~~~~~~~~~~~~~~   98 (570)
                      ++.|++.+.++.     ...++||||||||.||+++|.+|++ |++|+||||...... +...                 
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~~g~s~~-----------------   77 (640)
T PRK07573         15 EEKWDRYKFHLKLVNPANKRKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPRRAHSIA-----------------   77 (640)
T ss_pred             hhhhhhccccccccCCccccccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHH-----------------
Confidence            467877776653     2357999999999999999999999 999999998753321 0000                 


Q ss_pred             CCcccccCCcccccCCceeccccccCceeeeCCChhhhhhCCCChhhhhhhhHHHHhhccCCCCCc------chHHHHHH
Q 008331           99 PSQQFISEDGVYNARARVLGGGSVINAGFYTRASLRYVREVGWTESLVNSSYEWVEKKVAHEPPML------QWQSAVRD  172 (570)
Q Consensus        99 ~~~~~~~~~~~~~~~g~~lGG~s~~~~~~~~r~~~~~~~~~gw~~~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~  172 (570)
                                       .-||-.....  ....           .++.+.++++..+.-....+..      .......+
T Consensus        78 -----------------a~GGi~a~~~--~~~~-----------~Ds~~~~~~d~~~~g~~~~d~~lv~~l~~~s~~~i~  127 (640)
T PRK07573         78 -----------------AQGGINAAKN--YQND-----------GDSVYRLFYDTVKGGDFRAREANVYRLAEVSVNIID  127 (640)
T ss_pred             -----------------hhhchHhHhh--cccc-----------CCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence                             0111111110  0000           0122223333222211111110      01234567


Q ss_pred             HHHHcCCCCCCCCC----cCCCCcceeeeeEECC--CCccccH---HHhhhhcCCCCeEEEecceEEEEEecCCCCCCCe
Q 008331          173 GLLEAGVLPYNGFT----FDHIYGTKVSGTIFDE--DGHRHSA---ADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPT  243 (570)
Q Consensus       173 ~~~~~G~~~~~~~~----~~~~~~~~~~~~~~~~--~g~r~~~---~~~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~  243 (570)
                      ++.+.|++......    .....+..........  .|.....   ..+...+++.|++|++++.|++|+.+++     +
T Consensus       128 wL~~~GV~f~~~~~g~~~~~~~gghs~~R~~~~~~~tG~~i~~~l~~~L~~~~~~~gV~i~~~t~v~~Li~d~g-----~  202 (640)
T PRK07573        128 QCVAQGVPFAREYGGLLANRSFGGAQVSRTFYARGQTGQQLLLGAYQALSRQIAAGTVKMYTRTEMLDLVVVDG-----R  202 (640)
T ss_pred             HHHhcCCccccCCCCceeccccCCcccceeEeCCCCCchhHHHHHHHHHHHHHHhcCCEEEeceEEEEEEEeCC-----E
Confidence            77788875321100    0000111111111111  1211110   1123355678999999999999998765     9


Q ss_pred             EEEEEEEec-CCceEEEEecCCCCceEEEcCCcccc
Q 008331          244 AHCVTFYDH-VGARHRACLNNGGKNEIILSAGAIGS  278 (570)
Q Consensus       244 v~GV~~~~~-~G~~~~v~~~~~aa~~VVLaaGa~~t  278 (570)
                      |+||.+.+. +|..+.+     .+|.||||+|+++.
T Consensus       203 V~GV~~~~~~~g~~~~i-----~AkaVVLATGG~g~  233 (640)
T PRK07573        203 ARGIVARNLVTGEIERH-----TADAVVLATGGYGN  233 (640)
T ss_pred             EEEEEEEECCCCcEEEE-----ECCEEEECCCCccc
Confidence            999999864 5665555     47999999999875

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=99.44  E-value=1.7e-12  Score=151.72  Aligned_cols=58  Identities=12%  Similarity=0.208  Sum_probs=45.7

Q ss_pred             CCCeEEEecceEEEEEecCCC----CCCCeEEEEEEEec---CCceEEEEecCCCCceEEEcCCccccHH
Q 008331          218 PEKLTVYLRAVVQRIKFTETG----RAKPTAHCVTFYDH---VGARHRACLNNGGKNEIILSAGAIGSPQ  280 (570)
Q Consensus       218 ~~g~~i~~~~~V~~i~~~~~~----~~~~~v~GV~~~~~---~G~~~~v~~~~~aa~~VVLaaGa~~tp~  280 (570)
                      +.|++|+++++|++|+.++++    ....+|+||++.+.   +|+.+.++     +|.||||+|+|+...
T Consensus       559 ~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~-----AkaVILATGGf~~N~  623 (1167)
T PTZ00306        559 SGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLL-----ADAVILATGGFSNDH  623 (1167)
T ss_pred             cCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEE-----eceEEEecCCcccCc
Confidence            469999999999999997521    11238999999875   67766664     699999999998754

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=99.43  E-value=3.5e-12  Score=139.39  Aligned_cols=63  Identities=11%  Similarity=0.119  Sum_probs=48.3

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHH
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLML  284 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~  284 (570)
                      +...+++.|++|++++.|++|+.+++     +|+||.+.+.++ ...+.    +++.||||+|++....-++.
T Consensus       220 L~~~~~~~Gv~i~~~~~v~~l~~~~g-----~V~GV~~~~~~~-~~~i~----a~k~VVlAtGg~~~n~~~~~  282 (574)
T PRK12842        220 LAKSALDLGIPILTGTPARELLTEGG-----RVVGARVIDAGG-ERRIT----ARRGVVLACGGFSHDLARIA  282 (574)
T ss_pred             HHHHHHhCCCEEEeCCEEEEEEeeCC-----EEEEEEEEcCCc-eEEEE----eCCEEEEcCCCccchHHHHH
Confidence            33456778999999999999998765     999999985444 34454    56799999999976555544

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.42  E-value=1.5e-12  Score=141.45  Aligned_cols=58  Identities=21%  Similarity=0.340  Sum_probs=46.9

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEe-cCCceEEEEecCCCCceEEEcCCcccc
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYD-HVGARHRACLNNGGKNEIILSAGAIGS  278 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~-~~G~~~~v~~~~~aa~~VVLaaGa~~t  278 (570)
                      +...+.+.|++|++++.|++|+.++++    +|+||.+.+ .+|+.+.++     +|.||||+|++..
T Consensus       140 L~~~~~~~gv~i~~~t~v~~Li~~~~~----~v~Gv~~~~~~~g~~~~i~-----AkaVIlATGG~~~  198 (543)
T PRK06263        140 LMEYLIKERIKILEEVMAIKLIVDENR----EVIGAIFLDLRNGEIFPIY-----AKATILATGGAGQ  198 (543)
T ss_pred             HHHHHhcCCCEEEeCeEeeeeEEeCCc----EEEEEEEEECCCCcEEEEE-----cCcEEECCCCCCC
Confidence            444566689999999999999988763    699999876 567666664     6999999999864

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=99.42  E-value=4.2e-12  Score=138.63  Aligned_cols=63  Identities=16%  Similarity=0.208  Sum_probs=50.0

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHH
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLML  284 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~  284 (570)
                      ++..+++.|++|++++.|++|+.+++     +|+||.+.+ +|+.+.+.    +++.||||+|++....=|++
T Consensus       227 L~~~~~~~Gv~i~~~t~v~~Li~~~g-----~V~GV~~~~-~g~~~~i~----A~~~VVlAtGg~~~n~em~~  289 (578)
T PRK12843        227 LLYSLRARGVRILTQTDVESLETDHG-----RVIGATVVQ-GGVRRRIR----ARGGVVLATGGFNRHPQLRR  289 (578)
T ss_pred             HHHHHHhCCCEEEeCCEEEEEEeeCC-----EEEEEEEec-CCeEEEEE----ccceEEECCCCcccCHHHHH
Confidence            45566778999999999999998754     999999874 66666665    56899999999987555544

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.42  E-value=2.6e-12  Score=140.18  Aligned_cols=58  Identities=14%  Similarity=0.107  Sum_probs=46.6

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEe-cCCceEEEEecCCCCceEEEcCCcccc
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYD-HVGARHRACLNNGGKNEIILSAGAIGS  278 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~-~~G~~~~v~~~~~aa~~VVLaaGa~~t  278 (570)
                      +...+.+.|+++++++.|++|+.++++    +|+||.+.+ .+|+.+.++     +|.||||+|++..
T Consensus       149 L~~~~~~~gi~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~~~  207 (588)
T PRK08958        149 LYQQNLKNHTTIFSEWYALDLVKNQDG----AVVGCTAICIETGEVVYFK-----ARATVLATGGAGR  207 (588)
T ss_pred             HHHHhhhcCCEEEeCcEEEEEEECCCC----EEEEEEEEEcCCCcEEEEE-----cCeEEECCCCccc
Confidence            445566789999999999999997544    999999864 367666664     6999999999875

>PRK07395 L-aspartate oxidase; Provisional

Probab=99.42  E-value=1.8e-12  Score=140.25  Aligned_cols=57  Identities=18%  Similarity=0.240  Sum_probs=43.7

Q ss_pred             hhhhcC-CCCeEEEecceEEEEEecC-CCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCcccc
Q 008331          212 LLEYAD-PEKLTVYLRAVVQRIKFTE-TGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGS  278 (570)
Q Consensus       212 ~l~~~~-~~g~~i~~~~~V~~i~~~~-~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~t  278 (570)
                      +...+. +.|++|++++.|++|+.++ ++    +|+||.+.+ +|..+.+     .+|.||||+|+++.
T Consensus       140 L~~~~~~~~gi~i~~~~~v~~Li~~~~~g----~v~Gv~~~~-~g~~~~i-----~AkaVILATGG~~~  198 (553)
T PRK07395        140 LTEQVLQRPNIEIISQALALSLWLEPETG----RCQGISLLY-QGQITWL-----RAGAVILATGGGGQ  198 (553)
T ss_pred             HHHHHhhcCCcEEEECcChhhheecCCCC----EEEEEEEEE-CCeEEEE-----EcCEEEEcCCCCcc
Confidence            344443 4699999999999999874 23    899998874 6665555     37999999999753

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=99.41  E-value=5.5e-12  Score=137.81  Aligned_cols=62  Identities=13%  Similarity=0.156  Sum_probs=48.3

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHH
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLM  283 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl  283 (570)
                      +.+.+++.|++|+++++|++|+.+++     +++||.+.+ ++..+.++    +++.||||+|++....-++
T Consensus       223 L~~~a~~~Gv~i~~~t~v~~l~~~~g-----~v~GV~~~~-~~~~~~i~----a~k~VVlAtGg~~~n~~~~  284 (581)
T PRK06134        223 LLKSAEDLGVRIWESAPARELLREDG-----RVAGAVVET-PGGLQEIR----ARKGVVLAAGGFPHDPARR  284 (581)
T ss_pred             HHHHHHhCCCEEEcCCEEEEEEEeCC-----EEEEEEEEE-CCcEEEEE----eCCEEEEcCCCcccCHHHH
Confidence            44567778999999999999998754     999999875 44445565    4599999999987655554

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=99.41  E-value=2.4e-12  Score=141.03  Aligned_cols=58  Identities=19%  Similarity=0.264  Sum_probs=46.4

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEec-CCceEEEEecCCCCceEEEcCCcccc
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDH-VGARHRACLNNGGKNEIILSAGAIGS  278 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~-~G~~~~v~~~~~aa~~VVLaaGa~~t  278 (570)
                      +...+.+.|++|+.++.+++|+.++++    +|.||.+.+. +|+.+.+.     +|.||||+|+++.
T Consensus       193 L~~~a~~~gv~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~g~  251 (635)
T PLN00128        193 LYGQAMKHNTQFFVEYFALDLIMDSDG----ACQGVIALNMEDGTLHRFR-----AHSTILATGGYGR  251 (635)
T ss_pred             HHHHHHhCCCEEEEeeEEEEEEEcCCC----EEEEEEEEEcCCCeEEEEE-----cCeEEECCCCCcc
Confidence            444556679999999999999987544    9999998763 57666664     7999999999875

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.41  E-value=3e-12  Score=139.34  Aligned_cols=56  Identities=11%  Similarity=0.121  Sum_probs=45.0

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEec-CCceEEEEecCCCCceEEEcCCccc
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDH-VGARHRACLNNGGKNEIILSAGAIG  277 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~-~G~~~~v~~~~~aa~~VVLaaGa~~  277 (570)
                      +...+.+.|+++++++.|++|+.+++     +|+||.+.+. +|+.+.+     .+|.||||+|+++
T Consensus       142 L~~~~~~~gv~i~~~~~~~~Li~~~g-----~v~Gv~~~~~~~g~~~~i-----~AkaVVLATGG~~  198 (566)
T PRK06452        142 LFERTSGLNVDFYNEWFSLDLVTDNK-----KVVGIVAMQMKTLTPFFF-----KTKAVVLATGGMG  198 (566)
T ss_pred             HHHHHHhCCCEEEeCcEEEEEEEECC-----EEEEEEEEECCCCeEEEE-----EeCeEEECCCccc
Confidence            44455567999999999999999765     9999999865 4554555     4799999999987

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=99.41  E-value=3.1e-12  Score=140.24  Aligned_cols=58  Identities=16%  Similarity=0.230  Sum_probs=46.0

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEe-cCCceEEEEecCCCCceEEEcCCcccc
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYD-HVGARHRACLNNGGKNEIILSAGAIGS  278 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~-~~G~~~~v~~~~~aa~~VVLaaGa~~t  278 (570)
                      +...+.+.|++|++++.|++|+.++++    +|+||.+.+ .+|+.+.+     .+|.||||+|++..
T Consensus       172 L~~~a~~~gv~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i-----~AkaVVLATGG~~~  230 (617)
T PTZ00139        172 LYGQSLKYDCNFFIEYFALDLIMDEDG----ECRGVIAMSMEDGSIHRF-----RAHYTVIATGGYGR  230 (617)
T ss_pred             HHHHHHhCCCEEEeceEEEEEEECCCC----EEEEEEEEECCCCeEEEE-----ECCcEEEeCCCCcc
Confidence            445566789999999999999985443    999999865 35766666     47999999999864

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.40  E-value=2.9e-12  Score=140.16  Aligned_cols=58  Identities=16%  Similarity=0.312  Sum_probs=46.8

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEe-cCCceEEEEecCCCCceEEEcCCcccc
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYD-HVGARHRACLNNGGKNEIILSAGAIGS  278 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~-~~G~~~~v~~~~~aa~~VVLaaGa~~t  278 (570)
                      +...+.+.|+++++++.|++|+.++++    +|+||.+.+ .+|+.+.+.     +|.||||+|+++.
T Consensus       155 L~~~~~~~gi~i~~~~~v~~Li~~~~g----~v~Gv~~~~~~~g~~~~i~-----AkaVVLATGG~~~  213 (598)
T PRK09078        155 LYQQSLKHNAEFFIEYFALDLIMDDGG----VCRGVVAWNLDDGTLHRFR-----AHMVVLATGGYGR  213 (598)
T ss_pred             HHHHHhhcCCEEEEeEEEEEEEEcCCC----EEEEEEEEECCCCcEEEEE-----cCEEEECCCCCcc
Confidence            445566789999999999999997644    999999864 467666664     6899999999875

>PLN02815 L-aspartate oxidase

Probab=99.39  E-value=2.9e-12  Score=139.26  Aligned_cols=61  Identities=20%  Similarity=0.299  Sum_probs=44.2

Q ss_pred             hhhhcC-CCCeEEEecceEEEEEecCCCCCCCeEEEEEEEec-CCceEEEEecCCCCceEEEcCCcccc
Q 008331          212 LLEYAD-PEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDH-VGARHRACLNNGGKNEIILSAGAIGS  278 (570)
Q Consensus       212 ~l~~~~-~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~-~G~~~~v~~~~~aa~~VVLaaGa~~t  278 (570)
                      +...+. ..|++|++++.|++|+.++++ ...+|+||.+.+. +|..+.+.     +|.||||+|+++.
T Consensus       161 L~~~~~~~~~i~i~~~~~~~~Li~~~~g-~~~~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~g~  223 (594)
T PLN02815        161 LLEAVKNDPNITFFEHHFAIDLLTSQDG-GSIVCHGADVLDTRTGEVVRFI-----SKVTLLASGGAGH  223 (594)
T ss_pred             HHHHHHhcCCCEEEeceEhheeeeecCC-CccEEEEEEEEEcCCCeEEEEE-----eceEEEcCCccee
Confidence            444443 459999999999999986532 0014999998653 56655664     7999999999863

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.36  E-value=5.9e-12  Score=124.84  Aligned_cols=168  Identities=20%  Similarity=0.288  Sum_probs=102.9

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCCCCCcccccccccccCCCCCCCCCcccccCCcccccCCceec
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYENPNITDTGNFATTLLDPSPTSPSQQFISEDGVYNARARVLG  118 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lG  118 (570)
                      +.+||||||+|+||+++|..+++ |.+|+|+|+++....  ..                                  .+-
T Consensus         2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~Gr--Ki----------------------------------l~s   45 (408)
T COG2081           2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGR--KI----------------------------------LMS   45 (408)
T ss_pred             CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccc--ee----------------------------------Eec
Confidence            46899999999999999999999 999999999975431  00                                  122


Q ss_pred             cccccCceeeeCCChhhhhhCCCChhhhhhhhHHHHhhccCCCCCcchHHHHHHHHHHcCCCCCCCCCcCCCCcceeeee
Q 008331          119 GGSVINAGFYTRASLRYVREVGWTESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLLEAGVLPYNGFTFDHIYGTKVSGT  198 (570)
Q Consensus       119 G~s~~~~~~~~r~~~~~~~~~gw~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~  198 (570)
                      |++-.|...... ..++..+..=+...+.+.+.+.      .      .+.+++++..+|+....     ...|     .
T Consensus        46 GgGrCN~Tn~~~-~~~~ls~~p~~~~fl~sal~~f------t------~~d~i~~~e~~Gi~~~e-----~~~G-----r  102 (408)
T COG2081          46 GGGRCNFTNSEA-PDEFLSRNPGNGHFLKSALARF------T------PEDFIDWVEGLGIALKE-----EDLG-----R  102 (408)
T ss_pred             CCCCcccccccc-HHHHHHhCCCcchHHHHHHHhC------C------HHHHHHHHHhcCCeeEE-----ccCc-----e
Confidence            333444433222 2222221110112222222221      1      25688889999985321     1111     1


Q ss_pred             EECC-CCccccHHHhhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccc
Q 008331          199 IFDE-DGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIG  277 (570)
Q Consensus       199 ~~~~-~g~r~~~~~~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~  277 (570)
                      .++. +....-...++..+++.|++|+++++|..|..++.        +..+..++|+  ++     .++.+|||+|+..
T Consensus       103 ~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~--------~f~l~t~~g~--~i-----~~d~lilAtGG~S  167 (408)
T COG2081         103 MFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDS--------GFRLDTSSGE--TV-----KCDSLILATGGKS  167 (408)
T ss_pred             ecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCc--------eEEEEcCCCC--EE-----EccEEEEecCCcC
Confidence            2222 33333333466778899999999999999998874        3444445776  34     3799999999977


Q ss_pred             cHHH
Q 008331          278 SPQL  281 (570)
Q Consensus       278 tp~L  281 (570)
                      -|++
T Consensus       168 ~P~l  171 (408)
T COG2081         168 WPKL  171 (408)
T ss_pred             CCCC
Confidence            7754

>PRK07804 L-aspartate oxidase; Provisional

Probab=99.36  E-value=1.1e-11  Score=134.37  Aligned_cols=38  Identities=24%  Similarity=0.341  Sum_probs=34.7

Q ss_pred             CCCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           38 LISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        38 ~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      .+.++||||||+|.||+.+|.++++ |.+|+||||+...
T Consensus        13 ~~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~   51 (541)
T PRK07804         13 WRDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALD   51 (541)
T ss_pred             cccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCC
Confidence            4568999999999999999999999 9999999999753

>PRK09077 L-aspartate oxidase; Provisional

Probab=99.35  E-value=1.4e-11  Score=133.43  Aligned_cols=62  Identities=13%  Similarity=0.093  Sum_probs=44.3

Q ss_pred             hhhhc-CCCCeEEEecceEEEEEecCCC-CCCCeEEEEEEEec-CCceEEEEecCCCCceEEEcCCcccc
Q 008331          212 LLEYA-DPEKLTVYLRAVVQRIKFTETG-RAKPTAHCVTFYDH-VGARHRACLNNGGKNEIILSAGAIGS  278 (570)
Q Consensus       212 ~l~~~-~~~g~~i~~~~~V~~i~~~~~~-~~~~~v~GV~~~~~-~G~~~~v~~~~~aa~~VVLaaGa~~t  278 (570)
                      +...+ +++|++|++++.|++|+.++.. .++.+|+||.+.+. +|+...+     .++.||||+|++..
T Consensus       144 L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i-----~Ak~VVlATGG~~~  208 (536)
T PRK09077        144 LVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETI-----RAKFVVLATGGASK  208 (536)
T ss_pred             HHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEE-----ecCeEEECCCCCCC
Confidence            34433 4469999999999999986410 00128999998764 4665556     47999999999864

>PRK08071 L-aspartate oxidase; Provisional

Probab=99.34  E-value=1.1e-11  Score=133.18  Aligned_cols=56  Identities=21%  Similarity=0.240  Sum_probs=44.5

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCcccc
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGS  278 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~t  278 (570)
                      +...+. .|++|++++.|++|+.+++     ++.||.+.+.+|+.+.+.     ++.||||+|++..
T Consensus       136 L~~~~~-~gV~i~~~~~v~~Li~~~g-----~v~Gv~~~~~~g~~~~i~-----Ak~VVlATGG~~~  191 (510)
T PRK08071        136 LLQELV-PHVTVVEQEMVIDLIIENG-----RCIGVLTKDSEGKLKRYY-----ADYVVLASGGCGG  191 (510)
T ss_pred             HHHHHh-cCCEEEECeEhhheeecCC-----EEEEEEEEECCCcEEEEE-----cCeEEEecCCCcc
Confidence            334444 6999999999999998765     999999887667655554     7999999999864

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.33  E-value=1.6e-11  Score=134.11  Aligned_cols=57  Identities=19%  Similarity=0.306  Sum_probs=45.0

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEe-cCCceEEEEecCCCCceEEEcCCcccc
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYD-HVGARHRACLNNGGKNEIILSAGAIGS  278 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~-~~G~~~~v~~~~~aa~~VVLaaGa~~t  278 (570)
                      +...+.+.|++|++++.|++|+.+++     +|.||...+ .+|+...+.     +|.||||+|++..
T Consensus       141 L~~~~~~~gi~i~~~t~v~~L~~~~g-----~v~Gv~~~~~~~g~~~~i~-----AkaVVlATGG~~~  198 (575)
T PRK05945        141 LVNNLRRYGVTIYDEWYVMRLILEDN-----QAKGVVMYHIADGRLEVVR-----AKAVMFATGGYGR  198 (575)
T ss_pred             HHHHHhhCCCEEEeCcEEEEEEEECC-----EEEEEEEEEcCCCeEEEEE-----CCEEEECCCCCcC
Confidence            45556778999999999999998765     899998654 356555553     7999999999864

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=99.32  E-value=2.1e-11  Score=133.00  Aligned_cols=51  Identities=12%  Similarity=0.195  Sum_probs=41.5

Q ss_pred             CCCeEEEecceEEEEEecCCCCCCCeEEEEEEEe-cCCceEEEEecCCCCceEEEcCCcccc
Q 008331          218 PEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYD-HVGARHRACLNNGGKNEIILSAGAIGS  278 (570)
Q Consensus       218 ~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~-~~G~~~~v~~~~~aa~~VVLaaGa~~t  278 (570)
                      ..|+++++++.|++|+.+++     +|+||.+.+ .+|+.+.+.     +|.||||+|++..
T Consensus       146 ~~~i~i~~~~~v~~Li~~~g-----~v~Gv~~~~~~~g~~~~i~-----AkaVIlATGG~~~  197 (582)
T PRK09231        146 YPQIQRFDEHFVLDILVDDG-----HVRGLVAMNMMEGTLVQIR-----ANAVVMATGGAGR  197 (582)
T ss_pred             CCCcEEEeCeEEEEEEEeCC-----EEEEEEEEEcCCCcEEEEE-----CCEEEECCCCCcC
Confidence            35899999999999998765     999998864 356655564     7999999999764

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.32  E-value=1.6e-11  Score=134.13  Aligned_cols=50  Identities=14%  Similarity=0.131  Sum_probs=40.5

Q ss_pred             CeEEEecceEEEEEecCCCCCCCeEEEEEEEecC-CceEEEEecCCCCceEEEcCCcccc
Q 008331          220 KLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHV-GARHRACLNNGGKNEIILSAGAIGS  278 (570)
Q Consensus       220 g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~-G~~~~v~~~~~aa~~VVLaaGa~~t  278 (570)
                      +++++.++.+++|+.++++    +|+||.+.+.+ |+.+.+     .+|.||||+|++..
T Consensus       151 ~i~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i-----~AkaVILATGG~~~  201 (589)
T PRK08641        151 LVTKYEGWEFLGAVLDDEG----VCRGIVAQDLFTMEIESF-----PADAVIMATGGPGI  201 (589)
T ss_pred             CcEEEeeEEEEEEEECCCC----EEEEEEEEECCCCcEEEE-----ECCEEEECCCCCcC
Confidence            4899999999999987544    99999998754 444445     47999999999875

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=99.32  E-value=1.3e-11  Score=136.10  Aligned_cols=57  Identities=11%  Similarity=0.004  Sum_probs=46.6

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEe-cCCceEEEEecCCCCceEEEcCCcccc
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYD-HVGARHRACLNNGGKNEIILSAGAIGS  278 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~-~~G~~~~v~~~~~aa~~VVLaaGa~~t  278 (570)
                      +...+.+.|++|+.++.|++|+.+++     +|.||.+.+ .+|+.+.+.     +|.||||+|+++.
T Consensus       164 L~~~~~~~gv~i~~~~~~~~Li~~~g-----~v~Gv~~~~~~~G~~~~i~-----AkaVVLATGG~g~  221 (657)
T PRK08626        164 VDNEAIKLGVPVHDRKEAIALIHDGK-----RCYGAVVRCLITGELRAYV-----AKATLIATGGYGR  221 (657)
T ss_pred             HHHHHHhCCCEEEeeEEEEEEEEECC-----EEEEEEEEEcCCCcEEEEE-----cCeEEECCCcccC
Confidence            33456678999999999999998765     999999986 467766664     7999999999864

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.32  E-value=1.2e-11  Score=135.16  Aligned_cols=58  Identities=14%  Similarity=0.166  Sum_probs=45.6

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEec-CCceEEEEecCCCCceEEEcCCcccc
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDH-VGARHRACLNNGGKNEIILSAGAIGS  278 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~-~G~~~~v~~~~~aa~~VVLaaGa~~t  278 (570)
                      ++..+.+.|++++.++.|++|+.++++    +|+||.+.+. +|+...+     .+|.||||+|++..
T Consensus       154 L~~~~~~~gi~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i-----~AkaVILATGG~~~  212 (591)
T PRK07057        154 LYQQNVAAKTQFFVEWMALDLIRDADG----DVLGVTALEMETGDVYIL-----EAKTTLFATGGAGR  212 (591)
T ss_pred             HHHHHHhcCCEEEeCcEEEEEEEcCCC----eEEEEEEEEcCCCeEEEE-----ECCeEEECCCCccc
Confidence            445556789999999999999987544    8999998653 4554555     47999999999864

>TIGR00551 nadB L-aspartate oxidase

Probab=99.30  E-value=3.8e-11  Score=128.80  Aligned_cols=56  Identities=11%  Similarity=0.162  Sum_probs=43.5

Q ss_pred             hhhhcCC-CCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCcccc
Q 008331          212 LLEYADP-EKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGS  278 (570)
Q Consensus       212 ~l~~~~~-~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~t  278 (570)
                      +...+.+ .|++|++++.|++|+.+++     +++||.+.+. +....+     .++.||||+|++..
T Consensus       134 L~~~~~~~~gi~i~~~~~v~~l~~~~g-----~v~Gv~~~~~-~~~~~i-----~A~~VVlAtGG~~~  190 (488)
T TIGR00551       134 LVKKALNHPNIRIIEGENALDLLIETG-----RVVGVWVWNR-ETVETC-----HADAVVLATGGAGK  190 (488)
T ss_pred             HHHHHHhcCCcEEEECeEeeeeeccCC-----EEEEEEEEEC-CcEEEE-----EcCEEEECCCcccC
Confidence            4444554 7999999999999998765     8999998854 444445     47999999999864

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=99.29  E-value=3.6e-11  Score=130.92  Aligned_cols=52  Identities=12%  Similarity=0.165  Sum_probs=42.3

Q ss_pred             CCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEe-cCCceEEEEecCCCCceEEEcCCcccc
Q 008331          217 DPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYD-HVGARHRACLNNGGKNEIILSAGAIGS  278 (570)
Q Consensus       217 ~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~-~~G~~~~v~~~~~aa~~VVLaaGa~~t  278 (570)
                      +..|++++.++.|++|+.+++     +|+||.+.+ .+|+.+.+.     +|.||||+|++..
T Consensus       144 ~~~~i~i~~~~~v~~Li~~~g-----~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~~~  196 (580)
T TIGR01176       144 TYPQIMRYDEWFVTDLLVDDG-----RVCGLVAIEMAEGRLVTIL-----ADAVVLATGGAGR  196 (580)
T ss_pred             hcCCCEEEeCeEEEEEEeeCC-----EEEEEEEEEcCCCcEEEEe-----cCEEEEcCCCCcc
Confidence            346899999999999999765     999999865 367656664     7999999999864

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.29  E-value=2.1e-11  Score=134.03  Aligned_cols=48  Identities=15%  Similarity=0.160  Sum_probs=39.3

Q ss_pred             eEEEecceEEEEEecCCCCCCCeEEEEEEEe-cCCceEEEEecCCCCceEEEcCCcccc
Q 008331          221 LTVYLRAVVQRIKFTETGRAKPTAHCVTFYD-HVGARHRACLNNGGKNEIILSAGAIGS  278 (570)
Q Consensus       221 ~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~-~~G~~~~v~~~~~aa~~VVLaaGa~~t  278 (570)
                      ++|+.++.|++|+.+++     +++||...+ .+|+.+.+.     ++.||||+|+++.
T Consensus       166 v~i~~~~~v~~L~~~~g-----~v~Gv~~~~~~~g~~~~i~-----Ak~VVlATGG~~~  214 (626)
T PRK07803        166 IKVFAECTITELLKDGG-----RIAGAFGYWRESGRFVLFE-----APAVVLATGGIGK  214 (626)
T ss_pred             eEEEeCCEEEEEEEECC-----EEEEEEEEECCCCeEEEEE-----cCeEEECCCcccC
Confidence            99999999999998754     899998765 356555554     7999999999764

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=99.29  E-value=4.3e-11  Score=129.85  Aligned_cols=65  Identities=14%  Similarity=0.093  Sum_probs=51.4

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEec-CCceEEEEecCCCCceEEEcCCccccHHHHHHhCC
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDH-VGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGV  287 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~-~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGi  287 (570)
                      +...+.+.|++++++++|+.|..+++     +++||++.+. +|+...++     ++.||+|||+ ++.+|+...|+
T Consensus       155 l~~~A~~~Ga~i~~~t~V~~i~~~~~-----~v~gv~v~d~~~g~~~~i~-----A~~VVnAaG~-wa~~l~~~~g~  220 (546)
T PRK11101        155 NMLDAKEHGAQILTYHEVTGLIREGD-----TVCGVRVRDHLTGETQEIH-----APVVVNAAGI-WGQHIAEYADL  220 (546)
T ss_pred             HHHHHHhCCCEEEeccEEEEEEEcCC-----eEEEEEEEEcCCCcEEEEE-----CCEEEECCCh-hHHHHHHhcCC
Confidence            34456778999999999999998765     8999998753 35445664     7999999998 78888876654

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=99.28  E-value=5.3e-11  Score=130.30  Aligned_cols=57  Identities=16%  Similarity=0.203  Sum_probs=45.0

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEe-cCCceEEEEecCCCCceEEEcCCcccc
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYD-HVGARHRACLNNGGKNEIILSAGAIGS  278 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~-~~G~~~~v~~~~~aa~~VVLaaGa~~t  278 (570)
                      +...+.+.|+++++++.|++|+.+++     +|+||.+.+ .+|+...+.     +|.||||+|++..
T Consensus       135 L~~~~~~~gv~i~~~~~v~~L~~~~g-----~v~Gv~~~~~~~g~~~~i~-----Ak~VVlAtGG~~~  192 (566)
T TIGR01812       135 LYEQCLKLGVSFFNEYFALDLIHDDG-----RVRGVVAYDLKTGEIVFFR-----AKAVVLATGGYGR  192 (566)
T ss_pred             HHHHHHHcCCEEEeccEEEEEEEeCC-----EEEEEEEEECCCCcEEEEE-----CCeEEECCCcccC
Confidence            44455566999999999999998764     999999875 356555564     7999999999863

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.27  E-value=4.3e-11  Score=130.90  Aligned_cols=57  Identities=19%  Similarity=0.155  Sum_probs=43.7

Q ss_pred             hhhhcC-CCCeEEEecceEEEEEecCCCCCCCeEEEEEEEec-CCceEEEEecCCCCceEEEcCCcccc
Q 008331          212 LLEYAD-PEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDH-VGARHRACLNNGGKNEIILSAGAIGS  278 (570)
Q Consensus       212 ~l~~~~-~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~-~G~~~~v~~~~~aa~~VVLaaGa~~t  278 (570)
                      ++..+. ..|++++.++.|++|+.+++     +++||.+.+. +|+...+     .+|.||||+|++..
T Consensus       143 L~~~~~~~~gv~i~~~~~v~~Li~~~g-----~v~Gv~~~~~~~g~~~~i-----~Ak~VIlATGG~~~  201 (577)
T PRK06069        143 LYSRALRFDNIHFYDEHFVTSLIVENG-----VFKGVTAIDLKRGEFKVF-----QAKAGIIATGGAGR  201 (577)
T ss_pred             HHHHHHhcCCCEEEECCEEEEEEEECC-----EEEEEEEEEcCCCeEEEE-----ECCcEEEcCchhcc
Confidence            444443 36999999999999998765     9999988653 5654455     37999999999853

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.27  E-value=9.7e-12  Score=128.71  Aligned_cols=167  Identities=23%  Similarity=0.306  Sum_probs=81.1

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCCCCCcccccccccccCCCCCCCCCcccccCCcccccCCceeccc
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYENPNITDTGNFATTLLDPSPTSPSQQFISEDGVYNARARVLGGG  120 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lGG~  120 (570)
                      |||||||+|+||+++|..|++ |++|+||||+.....  ..                                  .+-|+
T Consensus         1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gk--Ki----------------------------------l~tG~   44 (409)
T PF03486_consen    1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGK--KI----------------------------------LITGN   44 (409)
T ss_dssp             -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-H--HH----------------------------------HHCGG
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCccccc--ce----------------------------------eecCC
Confidence            899999999999999999999 999999999975420  00                                  01122


Q ss_pred             cccCceeeeCCChhhhhhCCCChhhhhhhhHHHHhhccCCCCCcchHHHHHHHHHHcCCCCCCCCCcCCCCcceeeeeEE
Q 008331          121 SVINAGFYTRASLRYVREVGWTESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLLEAGVLPYNGFTFDHIYGTKVSGTIF  200 (570)
Q Consensus       121 s~~~~~~~~r~~~~~~~~~gw~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~  200 (570)
                      +..|.........++....+-+.+.+.+.+.+..            ...+.+.+.+.|++..     ....+     .++
T Consensus        45 GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~------------~~d~~~ff~~~Gv~~~-----~~~~g-----r~f  102 (409)
T PF03486_consen   45 GRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFS------------PEDLIAFFEELGVPTK-----IEEDG-----RVF  102 (409)
T ss_dssp             GT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-------------HHHHHHHHHHTT--EE-----E-STT-----EEE
T ss_pred             CCccccccccchhhHhhhcccchHHHHHHHhcCC------------HHHHHHHHHhcCCeEE-----EcCCC-----EEC
Confidence            2333222111111121110001122222222211            1456777888888421     00111     222


Q ss_pred             CCCCccccHHH-hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccH
Q 008331          201 DEDGHRHSAAD-LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSP  279 (570)
Q Consensus       201 ~~~g~r~~~~~-~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp  279 (570)
                      +......+... ++..+++.|++|+++++|++|..+++     .+..|++.  ++..  +     .++.||||+|+...|
T Consensus       103 P~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~-----~~f~v~~~--~~~~--~-----~a~~vILAtGG~S~p  168 (409)
T PF03486_consen  103 PKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKED-----GVFGVKTK--NGGE--Y-----EADAVILATGGKSYP  168 (409)
T ss_dssp             ETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETT-----EEEEEEET--TTEE--E-----EESEEEE----SSSG
T ss_pred             CCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCC-----ceeEeecc--Cccc--c-----cCCEEEEecCCCCcc
Confidence            22222222222 55567788999999999999999887     66777772  3432  3     379999999997766


Q ss_pred             H
Q 008331          280 Q  280 (570)
Q Consensus       280 ~  280 (570)
                      +
T Consensus       169 ~  169 (409)
T PF03486_consen  169 K  169 (409)
T ss_dssp             G
T ss_pred             c
Confidence            5

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.25  E-value=4.2e-11  Score=130.93  Aligned_cols=58  Identities=21%  Similarity=0.287  Sum_probs=45.2

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCC---CCCCCeEEEEEEEe-cCCceEEEEecCCCCceEEEcCCcccc
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTET---GRAKPTAHCVTFYD-HVGARHRACLNNGGKNEIILSAGAIGS  278 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~---~~~~~~v~GV~~~~-~~G~~~~v~~~~~aa~~VVLaaGa~~t  278 (570)
                      +...+.+.|+++++++.|++|+.+++   +    +|+||.+.+ .+|+.+.+.     +|.||||+|++..
T Consensus       146 L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g----~v~Gv~~~~~~~g~~~~i~-----AkaVVLATGG~~~  207 (583)
T PRK08205        146 LYQNCVKHGVEFFNEFYVLDLLLTETPSGP----VAAGVVAYELATGEIHVFH-----AKAVVFATGGSGR  207 (583)
T ss_pred             HHHHHHhcCCEEEeCCEEEEEEecCCccCC----cEEEEEEEEcCCCeEEEEE-----eCeEEECCCCCcc
Confidence            44556678999999999999998752   3    899998864 356555554     7999999999863

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=99.24  E-value=7.5e-11  Score=129.01  Aligned_cols=53  Identities=15%  Similarity=0.197  Sum_probs=43.0

Q ss_pred             CCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEec-CCceEEEEecCCCCceEEEcCCcccc
Q 008331          217 DPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDH-VGARHRACLNNGGKNEIILSAGAIGS  278 (570)
Q Consensus       217 ~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~-~G~~~~v~~~~~aa~~VVLaaGa~~t  278 (570)
                      ++.|++|++++.|++|+.++++    +|+||.+.+. +|+...+.     +|.||||+|+++.
T Consensus       144 ~~~gV~i~~~t~v~~Li~dd~g----rV~GV~~~~~~~g~~~~i~-----AkaVVLATGG~g~  197 (603)
T TIGR01811       144 AAGLVEKYEGWEMLDIIVVDGN----RARGIIARNLVTGEIETHS-----ADAVILATGGYGN  197 (603)
T ss_pred             ccCCcEEEeCcEEEEEEEcCCC----EEEEEEEEECCCCcEEEEE-----cCEEEECCCCCcC
Confidence            3458999999999999987654    9999999864 56655554     7899999999864

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK07512 L-aspartate oxidase; Provisional

Probab=99.23  E-value=7.9e-11  Score=126.79  Aligned_cols=56  Identities=20%  Similarity=0.259  Sum_probs=42.6

Q ss_pred             hhhhcCC-CCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCcccc
Q 008331          212 LLEYADP-EKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGS  278 (570)
Q Consensus       212 ~l~~~~~-~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~t  278 (570)
                      +...+.+ .|++++.++.|++|+.+++     +|+||.+.+ ++..+.+     .++.||||+|++..
T Consensus       142 L~~~~~~~~gV~i~~~~~v~~Li~~~g-----~v~Gv~~~~-~~~~~~i-----~Ak~VVLATGG~~~  198 (513)
T PRK07512        142 LIAAVRATPSITVLEGAEARRLLVDDG-----AVAGVLAAT-AGGPVVL-----PARAVVLATGGIGG  198 (513)
T ss_pred             HHHHHHhCCCCEEEECcChhheeecCC-----EEEEEEEEe-CCeEEEE-----ECCEEEEcCCCCcC
Confidence            4444443 5899999999999988754     999999875 3444445     37999999999863

>PRK08275 putative oxidoreductase; Provisional

Probab=99.19  E-value=1.7e-10  Score=125.73  Aligned_cols=57  Identities=19%  Similarity=0.257  Sum_probs=44.6

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEe-cCCceEEEEecCCCCceEEEcCCccc
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYD-HVGARHRACLNNGGKNEIILSAGAIG  277 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~-~~G~~~~v~~~~~aa~~VVLaaGa~~  277 (570)
                      +...+++.|++|++++.|++|+.++++    ++.||.+.+ .+|+...+     .+|.||||+|++.
T Consensus       143 L~~~~~~~gv~i~~~~~v~~Li~~~~g----~v~Gv~~~~~~~g~~~~i-----~Ak~VIlATGG~~  200 (554)
T PRK08275        143 LYRQLKRARVLITNRIMATRLLTDADG----RVAGALGFDCRTGEFLVI-----RAKAVILCCGAAG  200 (554)
T ss_pred             HHHHHHHCCCEEEcceEEEEEEEcCCC----eEEEEEEEecCCCcEEEE-----ECCEEEECCCCcc
Confidence            445566789999999999999997443    899998764 35655555     3799999999975

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=99.18  E-value=1.8e-10  Score=125.30  Aligned_cols=53  Identities=11%  Similarity=0.166  Sum_probs=41.6

Q ss_pred             cCCCCeEEEecceEEEEEecCC--CCCCCeEEEEEEEe-cCCceEEEEecCCCCceEEEcCCccc
Q 008331          216 ADPEKLTVYLRAVVQRIKFTET--GRAKPTAHCVTFYD-HVGARHRACLNNGGKNEIILSAGAIG  277 (570)
Q Consensus       216 ~~~~g~~i~~~~~V~~i~~~~~--~~~~~~v~GV~~~~-~~G~~~~v~~~~~aa~~VVLaaGa~~  277 (570)
                      +.+.+++|+.++.|++|+.+++  +    +|+||.+.+ .+|+.+.+.     +|.||||+|++.
T Consensus       136 l~~~~~~i~~~~~v~~Ll~d~~~~G----rV~Gv~~~~~~~g~~~~i~-----AkaVVLATGG~~  191 (614)
T TIGR02061       136 AKNALGDIFERIFIVKLLLDKNTPN----RIAGAVGFNVRANEVHVFK-----AKTVIVAAGGAV  191 (614)
T ss_pred             HHhCCCeEEcccEEEEEEecCCCCC----eEEEEEEEEeCCCcEEEEE-----CCEEEECCCccc
Confidence            3445679999999999998752  3    899999865 356656664     799999999985

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=99.16  E-value=5.3e-11  Score=122.63  Aligned_cols=60  Identities=28%  Similarity=0.305  Sum_probs=45.2

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHHhCC
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGV  287 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGi  287 (570)
                      +...+.+.|++|+++++|++|..+++     +++||.+.  +|+   +     .++.||+|+|+ +++.|+..+|+
T Consensus       153 l~~~~~~~Gv~i~~~~~V~~i~~~~~-----~v~gv~~~--~g~---i-----~ad~vV~a~G~-~s~~l~~~~~~  212 (358)
T PF01266_consen  153 LAAEAQRAGVEIRTGTEVTSIDVDGG-----RVTGVRTS--DGE---I-----RADRVVLAAGA-WSPQLLPLLGL  212 (358)
T ss_dssp             HHHHHHHTT-EEEESEEEEEEEEETT-----EEEEEEET--TEE---E-----EECEEEE--GG-GHHHHHHTTTT
T ss_pred             hHHHHHHhhhhccccccccchhhccc-----cccccccc--ccc---c-----ccceeEecccc-cceeeeecccc
Confidence            44456677999999999999999987     88888875  563   4     36999999997 78888877653

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=99.15  E-value=1.6e-10  Score=127.00  Aligned_cols=65  Identities=18%  Similarity=0.115  Sum_probs=51.8

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecC-CCCCCCeEEEEEEEec-CCceEEEEecCCCCceEEEcCCccccHHHHHHhC
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTE-TGRAKPTAHCVTFYDH-VGARHRACLNNGGKNEIILSAGAIGSPQLLMLSG  286 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~-~~~~~~~v~GV~~~~~-~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SG  286 (570)
                      ++..+.+.|++++.+++|++|..++ ++    ++++|.+.|. +|+.+.+.     ++.||+|||+ ++.+|+...|
T Consensus       238 l~~~A~~~Ga~i~~~~~V~~l~~~~~~g----~v~gV~v~d~~tg~~~~i~-----a~~VVnAaGa-ws~~l~~~~g  304 (627)
T PLN02464        238 LACTAALAGAAVLNYAEVVSLIKDESTG----RIVGARVRDNLTGKEFDVY-----AKVVVNAAGP-FCDEVRKMAD  304 (627)
T ss_pred             HHHHHHhCCcEEEeccEEEEEEEecCCC----cEEEEEEEECCCCcEEEEE-----eCEEEECCCH-hHHHHHHhcc
Confidence            4556778899999999999999874 33    8999998764 45555564     7999999998 7888888765

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=99.15  E-value=6.6e-10  Score=121.91  Aligned_cols=56  Identities=11%  Similarity=0.077  Sum_probs=42.3

Q ss_pred             hhhhcCCC-CeEEEecceEEEEEecCCCCCCCeEEEEEEEe-cCCceEEEEecCCCCceEEEcCCccc
Q 008331          212 LLEYADPE-KLTVYLRAVVQRIKFTETGRAKPTAHCVTFYD-HVGARHRACLNNGGKNEIILSAGAIG  277 (570)
Q Consensus       212 ~l~~~~~~-g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~-~~G~~~~v~~~~~aa~~VVLaaGa~~  277 (570)
                      +...+.+. |++++.++.|++|+.+++     +|+||.+.+ .+|+.+.+.     ++.||||+|++.
T Consensus       138 L~~~a~~~ggV~i~~~~~v~~Li~~~g-----~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~~  195 (608)
T PRK06854        138 VAEAAKKALGDNVLNRVFITDLLVDDN-----RIAGAVGFSVRENKFYVFK-----AKAVIVATGGAA  195 (608)
T ss_pred             HHHHHHhcCCCEEEeCCEEEEEEEeCC-----EEEEEEEEEccCCcEEEEE-----CCEEEECCCchh
Confidence            33445444 599999999999998765     899998653 356555553     799999999975

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=99.14  E-value=5.1e-10  Score=114.85  Aligned_cols=66  Identities=18%  Similarity=0.184  Sum_probs=51.0

Q ss_pred             HhhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHHhCCCCh
Q 008331          211 DLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPA  290 (570)
Q Consensus       211 ~~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGiG~~  290 (570)
                      .|+..+.+.|++|.+|++|++|...++     .++-+..  .+|+.. +     .+|.||.|||. .+-+|++++|+.+.
T Consensus       158 ~l~e~a~~~g~~i~ln~eV~~i~~~~d-----g~~~~~~--~~g~~~-~-----~ak~Vin~AGl-~Ad~la~~~g~~~~  223 (429)
T COG0579         158 ALAEEAQANGVELRLNTEVTGIEKQSD-----GVFVLNT--SNGEET-L-----EAKFVINAAGL-YADPLAQMAGIPED  223 (429)
T ss_pred             HHHHHHHHcCCEEEecCeeeEEEEeCC-----ceEEEEe--cCCcEE-E-----EeeEEEECCch-hHHHHHHHhCCCcc
Confidence            366667777999999999999999877     2232333  467654 5     48999999998 78999999998763

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=99.09  E-value=1.3e-09  Score=115.77  Aligned_cols=61  Identities=16%  Similarity=0.153  Sum_probs=46.4

Q ss_pred             hhhhcCC----CC--eEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHHh
Q 008331          212 LLEYADP----EK--LTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLS  285 (570)
Q Consensus       212 ~l~~~~~----~g--~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~S  285 (570)
                      |...+.+    .|  ++|+++++|++|..+++     ....|.+  .+|.   +     .++.||+|||+ +|.+|+.++
T Consensus       217 l~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~-----~~~~V~T--~~G~---i-----~A~~VVvaAG~-~S~~La~~~  280 (497)
T PTZ00383        217 FVKHARRDALVPGKKISINLNTEVLNIERSND-----SLYKIHT--NRGE---I-----RARFVVVSACG-YSLLFAQKM  280 (497)
T ss_pred             HHHHHHhhhhhcCCCEEEEeCCEEEEEEecCC-----CeEEEEE--CCCE---E-----EeCEEEECcCh-hHHHHHHHh
Confidence            5556666    56  89999999999988755     4445544  3552   4     37999999999 799999999


Q ss_pred             CCC
Q 008331          286 GVG  288 (570)
Q Consensus       286 GiG  288 (570)
                      |++
T Consensus       281 Gi~  283 (497)
T PTZ00383        281 GYG  283 (497)
T ss_pred             CCC
Confidence            885

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.07  E-value=1.3e-09  Score=125.03  Aligned_cols=51  Identities=18%  Similarity=0.216  Sum_probs=41.4

Q ss_pred             CCCeEEEecceEEEEEecCCCCCCCeEEEEEEEe-cCCceEEEEecCCCCceEEEcCCcccc
Q 008331          218 PEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYD-HVGARHRACLNNGGKNEIILSAGAIGS  278 (570)
Q Consensus       218 ~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~-~~G~~~~v~~~~~aa~~VVLaaGa~~t  278 (570)
                      +.++++.+++.+.+|+.+++     +|+||.+.+ .+|+.+.+.     +|.||||+|+++.
T Consensus       155 ~~~i~~~~~~~~~~Li~~~g-----~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~g~  206 (897)
T PRK13800        155 RERIRIENRLMPVRVLTEGG-----RAVGAAALNTRTGEFVTVG-----AKAVILATGPCGR  206 (897)
T ss_pred             cCCcEEEeceeeEEEEeeCC-----EEEEEEEEecCCCcEEEEE-----CCEEEECCCcccc
Confidence            45899999999999998754     999999865 457766664     7999999999863

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=99.07  E-value=2.2e-09  Score=115.60  Aligned_cols=60  Identities=20%  Similarity=0.128  Sum_probs=44.9

Q ss_pred             hhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEe-cCCceEEEEecCCCCceEEEcCCccccHHHHHH
Q 008331          213 LEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYD-HVGARHRACLNNGGKNEIILSAGAIGSPQLLML  284 (570)
Q Consensus       213 l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~-~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~  284 (570)
                      ...+.+.|++++.+++|++|..+++     . .+|.+.+ .+|+..++.     ++.||+|||+ ++..++..
T Consensus       162 ~~~A~~~Ga~i~~~~~V~~i~~~~~-----~-~~v~~~~~~~g~~~~i~-----a~~VVnAaG~-wa~~l~~~  222 (508)
T PRK12266        162 ARDAAERGAEILTRTRVVSARRENG-----L-WHVTLEDTATGKRYTVR-----ARALVNAAGP-WVKQFLDD  222 (508)
T ss_pred             HHHHHHcCCEEEcCcEEEEEEEeCC-----E-EEEEEEEcCCCCEEEEE-----cCEEEECCCc-cHHHHHhh
Confidence            3456778999999999999987643     3 4677765 246555664     8999999998 67787654

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=99.07  E-value=2.9e-09  Score=111.55  Aligned_cols=63  Identities=14%  Similarity=0.157  Sum_probs=53.9

Q ss_pred             hcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecC-CceEEEEecCCCCceEEEcCCccccHHHHHHhCCCC
Q 008331          215 YADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHV-GARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGP  289 (570)
Q Consensus       215 ~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~-G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGiG~  289 (570)
                      .|...|.++++.++|++++.+++      +.||++.|.. |+.+.++     ++.||.|||. |+-+++...+..+
T Consensus       173 ~A~~~Ga~il~~~~v~~~~re~~------v~gV~~~D~~tg~~~~ir-----a~~VVNAaGp-W~d~i~~~~~~~~  236 (532)
T COG0578         173 DAAEHGAEILTYTRVESLRREGG------VWGVEVEDRETGETYEIR-----ARAVVNAAGP-WVDEILEMAGLEQ  236 (532)
T ss_pred             HHHhcccchhhcceeeeeeecCC------EEEEEEEecCCCcEEEEE-----cCEEEECCCc-cHHHHHHhhcccC
Confidence            46678999999999999999763      8899999865 7777875     8999999998 8999999887654

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=99.07  E-value=5e-10  Score=109.22  Aligned_cols=36  Identities=33%  Similarity=0.342  Sum_probs=33.2

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      ..+|||+|||+|++|+++|++|++ |++|+||||...
T Consensus        23 ~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~   59 (257)
T PRK04176         23 YLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLS   59 (257)
T ss_pred             hccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Confidence            457999999999999999999999 999999998753

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=99.06  E-value=1.8e-10  Score=105.39  Aligned_cols=36  Identities=33%  Similarity=0.421  Sum_probs=30.3

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      ..++||+|||+|++|+++|+.|++ |+||+|+|+...
T Consensus        15 ~~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~   51 (230)
T PF01946_consen   15 YLEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLS   51 (230)
T ss_dssp             HTEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS
T ss_pred             hccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCC
Confidence            457999999999999999999999 999999999853

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=99.06  E-value=1.2e-09  Score=115.80  Aligned_cols=61  Identities=20%  Similarity=0.219  Sum_probs=46.0

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecC-CCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHH
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTE-TGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLML  284 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~-~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~  284 (570)
                      +...+++.|++|+++++|++|+.++ ++    +++||...+ ++  ..+     .+|.||||+|+++..+-++.
T Consensus       129 L~~~a~~~Gv~i~~~~~v~~l~~~~~~g----~v~gv~~~~-~~--~~i-----~ak~VIlAtGG~~~n~~~~~  190 (432)
T TIGR02485       129 LYSSAERLGVEIRYGIAVDRIPPEAFDG----AHDGPLTTV-GT--HRI-----TTQALVLAAGGLGANRDWLR  190 (432)
T ss_pred             HHHHHHHcCCEEEeCCEEEEEEecCCCC----eEEEEEEcC-Cc--EEE-----EcCEEEEcCCCcccCHHHHH
Confidence            5556778899999999999999873 33    899988742 22  344     36999999999987665544

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=99.05  E-value=6.3e-09  Score=110.95  Aligned_cols=66  Identities=26%  Similarity=0.355  Sum_probs=47.4

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEe-cCCceEEEEecCCCCceEEEcCCccccHHHHHHhCCC
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYD-HVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVG  288 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~-~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGiG  288 (570)
                      ++..+.+.|++|+++++|++|..++++    .+ .|.+.+ ..|+..++.     ++.||+|||+ ++.+|+...|+.
T Consensus       184 L~~~a~~~Gv~i~~~t~V~~i~~~~~~----~v-~v~~~~~~~g~~~~i~-----A~~VV~AAG~-~s~~La~~~Gi~  250 (483)
T TIGR01320       184 LLGYLVQNGTTIRFGHEVRNLKRQSDG----SW-TVTVKNTRTGGKRTLN-----TRFVFVGAGG-GALPLLQKSGIP  250 (483)
T ss_pred             HHHHHHhCCCEEEeCCEEEEEEEcCCC----eE-EEEEeeccCCceEEEE-----CCEEEECCCc-chHHHHHHcCCC
Confidence            555666789999999999999886542    22 233332 234434453     7999999999 788999888874

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PRK08401 L-aspartate oxidase; Provisional

Probab=99.02  E-value=3.3e-09  Score=113.21  Aligned_cols=32  Identities=31%  Similarity=0.437  Sum_probs=30.6

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      +||||||+|.||+++|.+|++ |.+|+||||+.
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~   34 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI   34 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            699999999999999999999 99999999984

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.01  E-value=4.4e-09  Score=113.39  Aligned_cols=60  Identities=13%  Similarity=0.039  Sum_probs=46.3

Q ss_pred             hhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHH
Q 008331          213 LEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLML  284 (570)
Q Consensus       213 l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~  284 (570)
                      +..+.+.|++++.+++|++|..+++      ..+|.+.+..|+..++.     ++.||.|+|+ ++.+|+.+
T Consensus       162 ~~~a~~~Ga~i~~~~~V~~i~~~~~------~~~v~~~~~~g~~~~i~-----a~~VVnAaG~-wa~~l~~~  221 (502)
T PRK13369        162 ALDAAERGATILTRTRCVSARREGG------LWRVETRDADGETRTVR-----ARALVNAAGP-WVTDVIHR  221 (502)
T ss_pred             HHHHHHCCCEEecCcEEEEEEEcCC------EEEEEEEeCCCCEEEEE-----ecEEEECCCc-cHHHHHhh
Confidence            3456778999999999999988643      35677776556666664     7999999998 78888763

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=99.00  E-value=9.3e-09  Score=109.74  Aligned_cols=66  Identities=27%  Similarity=0.411  Sum_probs=46.5

Q ss_pred             hhhhcCCCC-eEEEecceEEEEEecCCCCCCCeEEEEEEEe-cCCceEEEEecCCCCceEEEcCCccccHHHHHHhCCC
Q 008331          212 LLEYADPEK-LTVYLRAVVQRIKFTETGRAKPTAHCVTFYD-HVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVG  288 (570)
Q Consensus       212 ~l~~~~~~g-~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~-~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGiG  288 (570)
                      |...+++.| ++|+++++|++|..++++    ++ .|.+.+ ..|+..++.     ++.||+|||+ ++.+|+..+|+.
T Consensus       189 L~~~a~~~Ggv~i~~~teV~~I~~~~dg----~~-~v~~~~~~~G~~~~i~-----A~~VVvaAGg-~s~~L~~~~Gi~  256 (494)
T PRK05257        189 LVGYLQKQGNFELQLGHEVRDIKRNDDG----SW-TVTVKDLKTGEKRTVR-----AKFVFIGAGG-GALPLLQKSGIP  256 (494)
T ss_pred             HHHHHHhCCCeEEEeCCEEEEEEECCCC----CE-EEEEEEcCCCceEEEE-----cCEEEECCCc-chHHHHHHcCCC
Confidence            445555555 899999999999886552    33 244432 245433453     7999999999 788999888874

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=98.99  E-value=6.5e-09  Score=109.39  Aligned_cols=60  Identities=15%  Similarity=0.144  Sum_probs=43.5

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHHhC
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSG  286 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SG  286 (570)
                      |+..+.+.|++++.+++|++|..++++    ++.+|.+.  +|.   +     .++.||+|||+ +++.++...|
T Consensus       189 l~~~a~~~Gv~~~~~~~V~~i~~~~~~----~~~~v~t~--~g~---i-----~a~~vVvaagg-~~~~l~~~~g  248 (407)
T TIGR01373       189 YARGADRRGVDIIQNCEVTGFIRRDGG----RVIGVETT--RGF---I-----GAKKVGVAVAG-HSSVVAAMAG  248 (407)
T ss_pred             HHHHHHHCCCEEEeCCEEEEEEEcCCC----cEEEEEeC--Cce---E-----ECCEEEECCCh-hhHHHHHHcC
Confidence            455677789999999999999865433    67777654  552   3     37889999999 5666665443

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>TIGR00292 thiazole biosynthesis enzyme

Probab=98.99  E-value=1.4e-09  Score=105.72  Aligned_cols=36  Identities=36%  Similarity=0.428  Sum_probs=33.5

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      ..+|||+|||+|++|+++|++|++ |++|+||||+..
T Consensus        19 ~~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~   55 (254)
T TIGR00292        19 YAESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLA   55 (254)
T ss_pred             hcCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            457999999999999999999999 999999999964

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=98.99  E-value=1.4e-09  Score=98.75  Aligned_cols=35  Identities=37%  Similarity=0.406  Sum_probs=32.0

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      .+-||||||+|++|+++|++||+ |+||+|+||.-.
T Consensus        29 ~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls   64 (262)
T COG1635          29 LESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLS   64 (262)
T ss_pred             hhccEEEECcCcchHHHHHHHHhCCceEEEEEeecc
Confidence            45699999999999999999999 999999998743

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=98.99  E-value=4.7e-09  Score=110.61  Aligned_cols=33  Identities=21%  Similarity=0.375  Sum_probs=31.4

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      +||||||+|..|+++|++|++ |.+|+||||+..
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~   35 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRY   35 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            599999999999999999999 999999999974

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=98.96  E-value=8.7e-09  Score=98.99  Aligned_cols=36  Identities=36%  Similarity=0.500  Sum_probs=33.0

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      ..++||||||+|.+|+++|.+||+ |.+|++||+-+.
T Consensus         3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEge   39 (552)
T COG3573           3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGE   39 (552)
T ss_pred             cccccEEEECccHHHHHHHHHHHhcCceEEEEccccc
Confidence            457899999999999999999999 999999998653

>PLN02661 Putative thiazole synthesis

Probab=98.96  E-value=6.5e-09  Score=103.89  Aligned_cols=35  Identities=34%  Similarity=0.495  Sum_probs=32.0

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc--cCeEEEEccCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ--NATVLLLEKGG   73 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~--g~~VlvLE~G~   73 (570)
                      ..++||+|||+|++|+++|+.|++  |++|+||||+.
T Consensus        90 ~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~  126 (357)
T PLN02661         90 YADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSV  126 (357)
T ss_pred             cccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCc
Confidence            457899999999999999999996  79999999875

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=98.95  E-value=1.1e-08  Score=106.56  Aligned_cols=33  Identities=39%  Similarity=0.612  Sum_probs=31.2

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      |||||||+|.+|+++|+.|++ |.+|+|||++..
T Consensus         1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~   34 (380)
T TIGR01377         1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDL   34 (380)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence            799999999999999999999 999999999764

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=98.95  E-value=3.3e-09  Score=113.25  Aligned_cols=38  Identities=34%  Similarity=0.277  Sum_probs=33.5

Q ss_pred             CCCCCcccEEEECCCCchhHHHHhhhc---cCeEEEEccCC
Q 008331           36 APLISYYDYIIVGGGTSGCPLAATLSQ---NATVLLLEKGG   73 (570)
Q Consensus        36 ~~~~~~~DvIIVGsG~aG~~~A~~La~---g~~VlvLE~G~   73 (570)
                      ...+.++||||||+|..|+++|++|++   |.+|+|||++.
T Consensus        19 L~~~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~   59 (460)
T TIGR03329        19 LVGDTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADL   59 (460)
T ss_pred             CCCCceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence            344567999999999999999999997   68999999985

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=98.95  E-value=1.4e-08  Score=105.66  Aligned_cols=35  Identities=29%  Similarity=0.375  Sum_probs=32.6

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      .+|||+|||+|..|+++|+.|++ |.+|+||||+..
T Consensus         2 ~~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~   37 (376)
T PRK11259          2 MRYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMP   37 (376)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHCCCeEEEEecccC
Confidence            36899999999999999999999 999999999863

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=98.93  E-value=1.1e-08  Score=104.07  Aligned_cols=57  Identities=18%  Similarity=0.226  Sum_probs=44.5

Q ss_pred             hhhhc-CCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccc
Q 008331          212 LLEYA-DPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIG  277 (570)
Q Consensus       212 ~l~~~-~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~  277 (570)
                      ++..+ +++|++|+.++.+.+|+.+++.    .+.||.+.+.+++...+     .++.||||+|+++
T Consensus       139 L~~~v~~~p~I~v~e~~~a~~li~~~~~----~~~Gv~~~~~~~~~~~~-----~a~~vVLATGG~g  196 (518)
T COG0029         139 LLKKVRNRPNITVLEGAEALDLIIEDGI----GVAGVLVLNRNGELGTF-----RAKAVVLATGGLG  196 (518)
T ss_pred             HHHHHhcCCCcEEEecchhhhhhhcCCc----eEeEEEEecCCCeEEEE-----ecCeEEEecCCCc
Confidence            44433 5599999999999999999873    55599998654545555     4899999999874

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.93  E-value=3.2e-09  Score=114.01  Aligned_cols=56  Identities=18%  Similarity=0.175  Sum_probs=43.6

Q ss_pred             hhhcCC-CCeEEEecceEEEEEecCCCCCCCeEEEEEEEecC-CceEEEEecCCCCceEEEcCCccc
Q 008331          213 LEYADP-EKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHV-GARHRACLNNGGKNEIILSAGAIG  277 (570)
Q Consensus       213 l~~~~~-~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~-G~~~~v~~~~~aa~~VVLaaGa~~  277 (570)
                      .+...+ .+++++.+..|++|+.++++    ++.||...+.+ |+.+.++     +|.||||+|+.+
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~v~Gvv~~~~~~g~~~~~~-----akavilaTGG~g  202 (562)
T COG1053         145 YEQLLKFSGIEIFDEYFVLDLLVDDGG----GVAGVVARDLRTGELYVFR-----AKAVILATGGAG  202 (562)
T ss_pred             HHHHHHhhcchhhhhhhhhhheecCCC----cEEEEEEEEecCCcEEEEe-----cCcEEEccCCce
Confidence            333333 67799999999999998774    59999988754 6555554     699999999987

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=98.92  E-value=3.4e-08  Score=104.75  Aligned_cols=66  Identities=21%  Similarity=0.250  Sum_probs=45.7

Q ss_pred             hhhhc-CCCCeEEEecceEEEEEecCCCCCCCeEEEEEEE-ecCCceEEEEecCCCCceEEEcCCccccHHHHHHhCCC
Q 008331          212 LLEYA-DPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFY-DHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVG  288 (570)
Q Consensus       212 ~l~~~-~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~-~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGiG  288 (570)
                      |...+ +..|++++++++|++|..++++    ..+ |.++ ...|+..++     .++.||+|||+ ++.+|+..+|+.
T Consensus       190 L~~~l~~~~Gv~i~~~~~V~~I~~~~d~----~w~-v~v~~t~~g~~~~i-----~Ad~VV~AAGa-wS~~La~~~Gi~  257 (497)
T PRK13339        190 LAKHLESHPNAQVKYNHEVVDLERLSDG----GWE-VTVKDRNTGEKREQ-----VADYVFIGAGG-GAIPLLQKSGIP  257 (497)
T ss_pred             HHHHHHhCCCcEEEeCCEEEEEEECCCC----CEE-EEEEecCCCceEEE-----EcCEEEECCCc-chHHHHHHcCCC
Confidence            44545 3468999999999999887332    332 3332 123432344     37999999999 899999999874

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.92  E-value=4.1e-09  Score=100.73  Aligned_cols=56  Identities=20%  Similarity=0.355  Sum_probs=45.5

Q ss_pred             CCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccH-HHHHH
Q 008331          219 EKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSP-QLLML  284 (570)
Q Consensus       219 ~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp-~LLl~  284 (570)
                      .-++|.++++|++|+.+++     +|.||+|.|.+|+...+.     ...||||+|+|+-. .-|++
T Consensus       158 e~~ki~~nskvv~il~n~g-----kVsgVeymd~sgek~~~~-----~~~VVlatGGf~ysd~~lLK  214 (477)
T KOG2404|consen  158 ELVKILLNSKVVDILRNNG-----KVSGVEYMDASGEKSKII-----GDAVVLATGGFGYSDKELLK  214 (477)
T ss_pred             HHHhhhhcceeeeeecCCC-----eEEEEEEEcCCCCcccee-----cCceEEecCCcCcChHHHHH
Confidence            3489999999999996665     999999999888876663     79999999999853 44443

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=98.90  E-value=2e-08  Score=106.07  Aligned_cols=57  Identities=16%  Similarity=0.098  Sum_probs=42.1

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHH
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLML  284 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~  284 (570)
                      ++..+.+.|++|+++++|++|..+++     ++.+|+..  ++   ++     .++.||+|+|+ ++..|+..
T Consensus       207 l~~~~~~~G~~i~~~~~V~~i~~~~~-----~~~~v~t~--~~---~~-----~a~~VV~a~G~-~~~~l~~~  263 (416)
T PRK00711        207 LAAMAEQLGVKFRFNTPVDGLLVEGG-----RITGVQTG--GG---VI-----TADAYVVALGS-YSTALLKP  263 (416)
T ss_pred             HHHHHHHCCCEEEcCCEEEEEEecCC-----EEEEEEeC--Cc---EE-----eCCEEEECCCc-chHHHHHH
Confidence            44566778999999999999988765     66666543  44   23     37999999998 56666543

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=98.89  E-value=1.1e-08  Score=107.19  Aligned_cols=59  Identities=20%  Similarity=0.197  Sum_probs=43.4

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHHhCC
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGV  287 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGi  287 (570)
                      +...+.+.|++++++++|+++..+++     .+ .|+.  .+|   ++     .++.||+|+|+ +++.++...|+
T Consensus       155 L~~~~~~~Gv~i~~~~~V~~i~~~~~-----~~-~V~~--~~g---~i-----~ad~vV~A~G~-~s~~l~~~~g~  213 (393)
T PRK11728        155 MAELIQARGGEIRLGAEVTALDEHAN-----GV-VVRT--TQG---EY-----EARTLINCAGL-MSDRLAKMAGL  213 (393)
T ss_pred             HHHHHHhCCCEEEcCCEEEEEEecCC-----eE-EEEE--CCC---EE-----EeCEEEECCCc-chHHHHHHhCC
Confidence            44566778999999999999987654     33 3443  345   24     37999999998 78888877765

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=98.87  E-value=1.5e-09  Score=114.53  Aligned_cols=59  Identities=19%  Similarity=0.164  Sum_probs=0.0

Q ss_pred             hcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHHhCC
Q 008331          215 YADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGV  287 (570)
Q Consensus       215 ~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGi  287 (570)
                      .+.+.|++|++++.|.+++.+++     ++++|.+.++.| ..++     .++.||-|+|-   -.|+.++|+
T Consensus        99 ~l~e~gv~v~~~t~v~~v~~~~~-----~i~~V~~~~~~g-~~~i-----~A~~~IDaTG~---g~l~~~aG~  157 (428)
T PF12831_consen   99 MLAEAGVEVLLGTRVVDVIRDGG-----RITGVIVETKSG-RKEI-----RAKVFIDATGD---GDLAALAGA  157 (428)
T ss_dssp             -------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccc-----cccccccccccc-cccc-----ccccccccccc---ccccccccc
Confidence            44668999999999999999876     899999987666 5666     48999999993   477888875

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=98.80  E-value=1.2e-08  Score=107.67  Aligned_cols=36  Identities=42%  Similarity=0.689  Sum_probs=33.4

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      +.|||||||+|++|+++|+.|++ |++|+||||+...
T Consensus         4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~   40 (428)
T PRK10157          4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSA   40 (428)
T ss_pred             ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCC
Confidence            46999999999999999999999 9999999999753

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=98.80  E-value=7.8e-08  Score=100.89  Aligned_cols=42  Identities=26%  Similarity=0.357  Sum_probs=38.2

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCCCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYENPN   80 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~~~~   80 (570)
                      +++|||||||+|.+|+++|..|++ |.|||+||+.+.+++...
T Consensus         2 ~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~a   44 (443)
T PTZ00363          2 DETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESA   44 (443)
T ss_pred             CCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccc
Confidence            568999999999999999999999 999999999998876443

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=98.78  E-value=2.6e-08  Score=104.19  Aligned_cols=37  Identities=43%  Similarity=0.692  Sum_probs=34.3

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPY   76 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~   76 (570)
                      .+|||||||+|+||+++|++|++ |++|+||||+....
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G   39 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPG   39 (396)
T ss_pred             ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCC
Confidence            57999999999999999999999 99999999997653

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=98.74  E-value=1.3e-07  Score=100.45  Aligned_cols=62  Identities=23%  Similarity=0.365  Sum_probs=46.7

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccc
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIG  277 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~  277 (570)
                      +...+++.|++++++++|++|+++.++ +..+|+||++.. +|+..++.+.  +++.||+++|++.
T Consensus       232 L~~~Le~~GV~f~~~t~VtdL~~~~d~-~~~~VtgI~~~~-~~~~~~I~l~--~~DlVivTnGs~t  293 (576)
T PRK13977        232 LIKYLEDHGVDFQYGTKVTDIDFDITG-GKKTATAIHLTR-NGKEETIDLT--EDDLVFVTNGSIT  293 (576)
T ss_pred             HHHHHHhCCCEEEeCCEEEEEEEcCCC-CceEEEEEEEEe-CCceeEEEec--CCCEEEEeCCcCc
Confidence            445677899999999999999986221 224899999974 4444444433  8999999999974

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=98.73  E-value=3.2e-07  Score=93.44  Aligned_cols=66  Identities=27%  Similarity=0.386  Sum_probs=50.1

Q ss_pred             hhhhc-CCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEe-cCCceEEEEecCCCCceEEEcCCccccHHHHHHhCCC
Q 008331          212 LLEYA-DPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYD-HVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVG  288 (570)
Q Consensus       212 ~l~~~-~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~-~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGiG  288 (570)
                      ++..+ ++.|+++.++++|++|...+++     ---|.+++ ..|....++     ++.|++.||+ ++=.||++|||.
T Consensus       187 l~~~l~~~~~~~~~~~~eV~~i~r~~dg-----~W~v~~~~~~~~~~~~v~-----a~FVfvGAGG-~aL~LLqksgi~  254 (488)
T PF06039_consen  187 LVEYLQKQKGFELHLNHEVTDIKRNGDG-----RWEVKVKDLKTGEKREVR-----AKFVFVGAGG-GALPLLQKSGIP  254 (488)
T ss_pred             HHHHHHhCCCcEEEecCEeCeeEECCCC-----CEEEEEEecCCCCeEEEE-----CCEEEECCch-HhHHHHHHcCCh
Confidence            55533 4469999999999999998773     23355554 346666674     8999999999 788999999883

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=98.73  E-value=4.3e-08  Score=101.62  Aligned_cols=33  Identities=33%  Similarity=0.555  Sum_probs=31.2

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      |||||||+|.+|+++|++|++ |.+|+|||++..
T Consensus         1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~   34 (365)
T TIGR03364         1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR   34 (365)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            699999999999999999999 999999999853

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.73  E-value=3.9e-08  Score=100.37  Aligned_cols=73  Identities=18%  Similarity=0.164  Sum_probs=55.2

Q ss_pred             CCCccccHHHh--hh-hcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEec-CCceEEEEecCCCCceEEEcCCccc
Q 008331          202 EDGHRHSAADL--LE-YADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDH-VGARHRACLNNGGKNEIILSAGAIG  277 (570)
Q Consensus       202 ~~g~r~~~~~~--l~-~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~-~G~~~~v~~~~~aa~~VVLaaGa~~  277 (570)
                      .+|.-..+..-  +. -|.+.|+.+.-..+|.+|+.|+++    ++.|++++|. .|+++.|+     +|.||-|+|-| 
T Consensus       217 yDGQ~nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~----kv~Ga~~rD~iTG~e~~I~-----Ak~VVNATGpf-  286 (680)
T KOG0042|consen  217 YDGQHNDARMNLAVALTAARNGATVLNHVEVVSLLKDKDG----KVIGARARDHITGKEYEIR-----AKVVVNATGPF-  286 (680)
T ss_pred             ecCCCchHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCC----ceeeeEEEEeecCcEEEEE-----EEEEEeCCCCc-
Confidence            46655555431  11 355689999999999999999886    8999999985 48888886     89999999997 


Q ss_pred             cHHHHHH
Q 008331          278 SPQLLML  284 (570)
Q Consensus       278 tp~LLl~  284 (570)
                      |-.|++.
T Consensus       287 sDsIr~M  293 (680)
T KOG0042|consen  287 SDSIRKM  293 (680)
T ss_pred             cHHHHhh
Confidence            3444443

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=98.67  E-value=1.5e-07  Score=105.16  Aligned_cols=33  Identities=36%  Similarity=0.509  Sum_probs=31.4

Q ss_pred             cccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      ++||||||+|.+|+++|+.|++ |.+|+||||+.
T Consensus       260 ~~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~  293 (662)
T PRK01747        260 ARDAAIIGGGIAGAALALALARRGWQVTLYEADE  293 (662)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCeEEEEecCC
Confidence            4799999999999999999999 99999999985

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=98.67  E-value=1.4e-07  Score=101.24  Aligned_cols=35  Identities=40%  Similarity=0.652  Sum_probs=32.2

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      ..+|||||||||.||+.||..||+ |.+|+|+|+..
T Consensus         2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~   37 (618)
T PRK05192          2 PEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNL   37 (618)
T ss_pred             CccceEEEECchHHHHHHHHHHHHcCCcEEEEeccc
Confidence            346999999999999999999999 99999999874

>PRK10015 oxidoreductase; Provisional

Probab=98.65  E-value=1.3e-07  Score=99.84  Aligned_cols=36  Identities=33%  Similarity=0.633  Sum_probs=33.5

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      ++|||||||+|+||+++|+.||+ |++|+||||+...
T Consensus         4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~   40 (429)
T PRK10015          4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSA   40 (429)
T ss_pred             cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence            46999999999999999999999 9999999999753

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=98.61  E-value=2.9e-07  Score=90.49  Aligned_cols=57  Identities=18%  Similarity=0.158  Sum_probs=45.6

Q ss_pred             hcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHHh
Q 008331          215 YADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLS  285 (570)
Q Consensus       215 ~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~S  285 (570)
                      ++..+|+++..+ .|..|+.|++     .+.||.++++.|++.+..     |..-|+|-|.|..   |.+|
T Consensus       157 a~slpNV~~eeG-tV~sLlee~g-----vvkGV~yk~k~gee~~~~-----ApLTvVCDGcfSn---lRrs  213 (509)
T KOG1298|consen  157 AASLPNVRLEEG-TVKSLLEEEG-----VVKGVTYKNKEGEEVEAF-----APLTVVCDGCFSN---LRRS  213 (509)
T ss_pred             HhcCCCeEEeee-eHHHHHhccC-----eEEeEEEecCCCceEEEe-----cceEEEecchhHH---HHHH
Confidence            456789998665 7888888877     899999998888877764     7899999999844   4555

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=98.61  E-value=1.9e-07  Score=98.91  Aligned_cols=37  Identities=24%  Similarity=0.401  Sum_probs=33.3

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      ....+|+|||||++|+++|.+|.+ |.+|+|+||++..
T Consensus         8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~v   45 (461)
T PLN02172          8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQV   45 (461)
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence            345799999999999999999999 9999999998754

>TIGR00275 flavoprotein, HI0933 family

Probab=98.60  E-value=2.4e-07  Score=96.96  Aligned_cols=31  Identities=45%  Similarity=0.638  Sum_probs=28.8

Q ss_pred             EEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           45 IIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        45 IIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      ||||+|++|+++|.+|++ |.+|+||||++..
T Consensus         1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~   32 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKI   32 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhcCCcEEEEecCccc
Confidence            699999999999999999 9999999998753

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.60  E-value=4.4e-07  Score=97.28  Aligned_cols=38  Identities=32%  Similarity=0.494  Sum_probs=35.0

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYE   77 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~   77 (570)
                      ..+||||||||.+|+++|..||+ |++|+||||.....+
T Consensus         2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG   40 (487)
T COG1233           2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGG   40 (487)
T ss_pred             CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCc
Confidence            36899999999999999999999 999999999887665

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=98.59  E-value=6.8e-07  Score=93.34  Aligned_cols=37  Identities=35%  Similarity=0.497  Sum_probs=33.8

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      ..++||||||+|.+|+++|+.|++ |.+|+|+|++...
T Consensus         2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~   39 (387)
T COG0665           2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAG   39 (387)
T ss_pred             CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccC
Confidence            457899999999999999999999 9999999998754

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=98.59  E-value=4.3e-07  Score=87.94  Aligned_cols=61  Identities=25%  Similarity=0.160  Sum_probs=45.3

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHHh
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLS  285 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~S  285 (570)
                      +...+.+.|+.++.+..|..+.++++.   ...++|.++  +|..+       -+|.+|+++|+ ++.+||-.|
T Consensus       159 ~~~~~~~~G~i~~dg~~v~~~~~~~e~---~~~v~V~Tt--~gs~Y-------~akkiI~t~Ga-Wi~klL~~~  219 (399)
T KOG2820|consen  159 LQDKARELGVIFRDGEKVKFIKFVDEE---GNHVSVQTT--DGSIY-------HAKKIIFTVGA-WINKLLPTS  219 (399)
T ss_pred             HHHHHHHcCeEEecCcceeeEeeccCC---CceeEEEec--cCCee-------ecceEEEEecH-HHHhhcCcc
Confidence            334678899999999999999887652   134445444  77643       37999999999 888988765

>TIGR02730 carot_isom carotene isomerase

Probab=98.58  E-value=4e-07  Score=98.16  Aligned_cols=68  Identities=19%  Similarity=0.145  Sum_probs=48.1

Q ss_pred             CCCCccccHHHhhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHH
Q 008331          201 DEDGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQ  280 (570)
Q Consensus       201 ~~~g~r~~~~~~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~  280 (570)
                      +..|.......+.+.+++.|++|+++++|++|..+++     ++.+|.+.  +|+.  +     .++.||+|+|...+-.
T Consensus       224 ~~gG~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~-----~~~gv~~~--~g~~--~-----~ad~vV~a~~~~~~~~  289 (493)
T TIGR02730       224 PKGGVGQIAESLVKGLEKHGGQIRYRARVTKIILENG-----KAVGVKLA--DGEK--I-----YAKRIVSNATRWDTFG  289 (493)
T ss_pred             CCChHHHHHHHHHHHHHHCCCEEEeCCeeeEEEecCC-----cEEEEEeC--CCCE--E-----EcCEEEECCChHHHHH
Confidence            3344433333355667788999999999999998765     88899875  5653  3     3688999999865544


Q ss_pred             HH
Q 008331          281 LL  282 (570)
Q Consensus       281 LL  282 (570)
                      .|
T Consensus       290 ~L  291 (493)
T TIGR02730       290 KL  291 (493)
T ss_pred             Hh
Confidence            34

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=98.57  E-value=2.9e-07  Score=86.54  Aligned_cols=31  Identities=35%  Similarity=0.529  Sum_probs=29.8

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      +++|||+|++|+++|+.|++ |.+|+|+|||.
T Consensus         3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~   34 (331)
T COG3380           3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGR   34 (331)
T ss_pred             cEEEEccchHHHHHHHHHHhcCcEEEEEEcCC
Confidence            69999999999999999999 99999999995

>PRK06185 hypothetical protein; Provisional

Probab=98.55  E-value=2.9e-07  Score=96.87  Aligned_cols=36  Identities=36%  Similarity=0.505  Sum_probs=33.4

Q ss_pred             CCCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           38 LISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        38 ~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      ...+|||+|||+|++|+++|..|++ |.+|+|||+.+
T Consensus         3 ~~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~   39 (407)
T PRK06185          3 EVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHA   39 (407)
T ss_pred             ccccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            4567999999999999999999999 99999999985

>PLN02985 squalene monooxygenase

Probab=98.50  E-value=8.4e-07  Score=95.51  Aligned_cols=37  Identities=32%  Similarity=0.404  Sum_probs=33.7

Q ss_pred             CCCCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           37 PLISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        37 ~~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      ..+..+||||||+|++|+++|..|++ |.+|+||||..
T Consensus        39 ~~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~   76 (514)
T PLN02985         39 RKDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL   76 (514)
T ss_pred             CcCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence            34568999999999999999999999 99999999974

>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.50  E-value=1.4e-06  Score=95.24  Aligned_cols=58  Identities=14%  Similarity=0.060  Sum_probs=47.1

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEe-cCCceEEEEecCCCCceEEEcCCcccc
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYD-HVGARHRACLNNGGKNEIILSAGAIGS  278 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~-~~G~~~~v~~~~~aa~~VVLaaGa~~t  278 (570)
                      +...+.+.|++|+.++.+++|+.++++    +|+||.+.+ .+|+.+.++     +|.||||+|++..
T Consensus       132 L~~~~~~~gi~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i~-----AkaVVLATGG~~~  190 (570)
T PRK05675        132 LYQGNLKNGTTFLNEWYAVDLVKNQDG----AVVGVIAICIETGETVYIK-----SKATVLATGGAGR  190 (570)
T ss_pred             HHHHHhccCCEEEECcEEEEEEEcCCC----eEEEEEEEEcCCCcEEEEe-----cCeEEECCCCccc
Confidence            445566789999999999999987554    999999865 467766664     7999999999874

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=98.50  E-value=1.5e-07  Score=93.22  Aligned_cols=76  Identities=20%  Similarity=0.271  Sum_probs=53.1

Q ss_pred             hhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEe----cCCce-------EEEEecCCCCceEEEcCCccc--cHH
Q 008331          214 EYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYD----HVGAR-------HRACLNNGGKNEIILSAGAIG--SPQ  280 (570)
Q Consensus       214 ~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~----~~G~~-------~~v~~~~~aa~~VVLaaGa~~--tp~  280 (570)
                      ..|+..|++|+.+..+.++++++++    .|.||.+.|    ++|..       ..++     ++..|+|-|.=+  |-+
T Consensus       191 ~kAEe~GvEiyPg~aaSevly~edg----sVkGiaT~D~GI~k~G~pKd~FerGme~h-----ak~TifAEGc~G~Lskq  261 (621)
T KOG2415|consen  191 EKAEELGVEIYPGFAASEVLYDEDG----SVKGIATNDVGISKDGAPKDTFERGMEFH-----AKVTIFAEGCHGSLSKQ  261 (621)
T ss_pred             HHHHhhCceeccccchhheeEcCCC----cEeeEeeccccccCCCCccccccccceec-----ceeEEEeccccchhHHH
Confidence            4788899999999999999999987    899999876    23321       2233     688899888654  567


Q ss_pred             HHHHhCCCChhhhhhcCC
Q 008331          281 LLMLSGVGPANELRKRGI  298 (570)
Q Consensus       281 LLl~SGiG~~~~l~~~gi  298 (570)
                      ++.+=++..-.+-+..||
T Consensus       262 i~kkf~Lr~n~e~qtYgl  279 (621)
T KOG2415|consen  262 IIKKFDLRENCEPQTYGL  279 (621)
T ss_pred             HHHHhCcccCCCcceecc
Confidence            776655433333343333

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.44  E-value=6.5e-07  Score=91.12  Aligned_cols=47  Identities=15%  Similarity=0.216  Sum_probs=36.1

Q ss_pred             cCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccc
Q 008331          216 ADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIG  277 (570)
Q Consensus       216 ~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~  277 (570)
                      ...+|++|+ +.+|++|+.+++     ++.||...  +|..  +     .++.||||+|.|.
T Consensus       106 ~~~~nl~i~-~~~V~~l~~e~~-----~v~GV~~~--~g~~--~-----~a~~vVlaTGtfl  152 (392)
T PF01134_consen  106 ESHPNLTII-QGEVTDLIVENG-----KVKGVVTK--DGEE--I-----EADAVVLATGTFL  152 (392)
T ss_dssp             HTSTTEEEE-ES-EEEEEECTT-----EEEEEEET--TSEE--E-----EECEEEE-TTTGB
T ss_pred             hcCCCeEEE-EcccceEEecCC-----eEEEEEeC--CCCE--E-----ecCEEEEeccccc
Confidence            356899996 679999999887     99999875  7764  3     3799999999953

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=98.43  E-value=1.8e-06  Score=90.43  Aligned_cols=36  Identities=36%  Similarity=0.478  Sum_probs=33.5

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      ...+||+|||+|++|+++|+.|++ |.+|+||||.+.
T Consensus         4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~   40 (392)
T PRK08773          4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREP   40 (392)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCC
Confidence            567999999999999999999999 999999999863

>TIGR02734 crtI_fam phytoene desaturase

Probab=98.42  E-value=5.7e-07  Score=97.38  Aligned_cols=68  Identities=21%  Similarity=0.186  Sum_probs=48.0

Q ss_pred             CCCccccHHHhhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHH
Q 008331          202 EDGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQL  281 (570)
Q Consensus       202 ~~g~r~~~~~~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~L  281 (570)
                      ..|.......+...+++.|++|++++.|++|..+++     ++++|++.  +|+.  +     .++.||+|++...+-..
T Consensus       215 ~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~-----~~~~V~~~--~g~~--~-----~ad~VI~a~~~~~~~~~  280 (502)
T TIGR02734       215 RGGTGALVAAMAKLAEDLGGELRLNAEVIRIETEGG-----RATAVHLA--DGER--L-----DADAVVSNADLHHTYRR  280 (502)
T ss_pred             CCCHHHHHHHHHHHHHHCCCEEEECCeEEEEEeeCC-----EEEEEEEC--CCCE--E-----ECCEEEECCcHHHHHHH
Confidence            334332333355566778999999999999998765     78888765  5653  3     36889999997666655


Q ss_pred             HH
Q 008331          282 LM  283 (570)
Q Consensus       282 Ll  283 (570)
                      |+
T Consensus       281 l~  282 (502)
T TIGR02734       281 LL  282 (502)
T ss_pred             hc
Confidence            54

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=98.40  E-value=1.8e-07  Score=88.34  Aligned_cols=56  Identities=18%  Similarity=0.311  Sum_probs=33.5

Q ss_pred             hcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHHh
Q 008331          215 YADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLS  285 (570)
Q Consensus       215 ~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~S  285 (570)
                      .+++.+++++++++|+++..+++     + --|++  .++  .++.     ++.||||+|.+..|+.+..-
T Consensus        91 ~~~~~~l~i~~~~~V~~v~~~~~-----~-w~v~~--~~~--~~~~-----a~~VVlAtG~~~~p~~p~~~  146 (203)
T PF13738_consen   91 YAERFGLEIRFNTRVESVRRDGD-----G-WTVTT--RDG--RTIR-----ADRVVLATGHYSHPRIPDIP  146 (203)
T ss_dssp             HHHHTTGGEETS--EEEEEEETT-----T-EEEEE--TTS---EEE-----EEEEEE---SSCSB---S-T
T ss_pred             HHhhcCcccccCCEEEEEEEecc-----E-EEEEE--Eec--ceee-----eeeEEEeeeccCCCCccccc
Confidence            55666888999999999999876     3 22444  356  3343     69999999998888887544

...

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=98.37  E-value=2.2e-06  Score=82.99  Aligned_cols=68  Identities=21%  Similarity=0.133  Sum_probs=47.1

Q ss_pred             hcCCCCeEEEecceEEEEEecC---------CCCC---CCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHH
Q 008331          215 YADPEKLTVYLRAVVQRIKFTE---------TGRA---KPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLL  282 (570)
Q Consensus       215 ~~~~~g~~i~~~~~V~~i~~~~---------~~~~---~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LL  282 (570)
                      .+...|+.+. +-+|++++++.         .+..   -.++.||.++-.++..++++     ...+|+|||+ +|-++.
T Consensus       252 k~~~lGv~f~-~GeV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~vvV~m~d~~~r~vk-----~al~V~aAGa-~s~QvA  324 (509)
T KOG2853|consen  252 KAITLGVQFV-KGEVVGFEFESQRAVHAFTDDGTAKLRAQRISGVVVRMNDALARPVK-----FALCVNAAGA-WSGQVA  324 (509)
T ss_pred             HhhhhcceEe-cceEEEEEEecccceeeecccchhhhhhcccceeEEecCchhcCcee-----EEEEEeccCc-cHHHHH
Confidence            4555677664 44888887762         2101   12566777765566667775     6889999999 899999


Q ss_pred             HHhCCCC
Q 008331          283 MLSGVGP  289 (570)
Q Consensus       283 l~SGiG~  289 (570)
                      .+.|||.
T Consensus       325 rlAgIG~  331 (509)
T KOG2853|consen  325 RLAGIGK  331 (509)
T ss_pred             HHhccCC
Confidence            9999983

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.36  E-value=3.7e-06  Score=88.71  Aligned_cols=36  Identities=39%  Similarity=0.551  Sum_probs=33.5

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      ..+|||+|||+|++|+++|..|++ |.+|+|+||.+.
T Consensus        16 ~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   52 (415)
T PRK07364         16 SLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPA   52 (415)
T ss_pred             ccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCc
Confidence            457999999999999999999999 999999999874

>PRK06126 hypothetical protein; Provisional

Probab=98.34  E-value=1.1e-05  Score=88.37  Aligned_cols=35  Identities=34%  Similarity=0.517  Sum_probs=32.7

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      ..++||+|||+|++|+++|..|++ |.+|+|+||.+
T Consensus         5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~   40 (545)
T PRK06126          5 TSETPVLIVGGGPVGLALALDLGRRGVDSILVERKD   40 (545)
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            457899999999999999999999 99999999875

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=98.33  E-value=4.8e-06  Score=87.96  Aligned_cols=39  Identities=28%  Similarity=0.376  Sum_probs=34.5

Q ss_pred             CCCcccEEEECCCCchhHHHHhhhc-cCe-EEEEccCCCCC
Q 008331           38 LISYYDYIIVGGGTSGCPLAATLSQ-NAT-VLLLEKGGSPY   76 (570)
Q Consensus        38 ~~~~~DvIIVGsG~aG~~~A~~La~-g~~-VlvLE~G~~~~   76 (570)
                      ..+.+||+|||+|.+|+++|++|.+ |.. ++||||.....
T Consensus         5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~G   45 (443)
T COG2072           5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVG   45 (443)
T ss_pred             cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcC
Confidence            4567899999999999999999999 887 99999997543

>PRK07208 hypothetical protein; Provisional

Probab=98.32  E-value=1.1e-05  Score=86.96  Aligned_cols=39  Identities=23%  Similarity=0.244  Sum_probs=35.1

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYE   77 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~   77 (570)
                      .+..||||||||.+|+++|++|++ |.+|+|+|+.+..++
T Consensus         2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG   41 (479)
T PRK07208          2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGG   41 (479)
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence            356799999999999999999999 999999999887655

>PLN02697 lycopene epsilon cyclase

Probab=98.31  E-value=2.1e-06  Score=91.99  Aligned_cols=34  Identities=26%  Similarity=0.392  Sum_probs=31.6

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKG   72 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G   72 (570)
                      +..|||||||+|++|+++|..|++ |++|+|||++
T Consensus       106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~  140 (529)
T PLN02697        106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPD  140 (529)
T ss_pred             cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCc
Confidence            446999999999999999999999 9999999975

>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E

Probab=98.30  E-value=5.3e-06  Score=90.68  Aligned_cols=57  Identities=16%  Similarity=0.249  Sum_probs=46.3

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEe-cCCceEEEEecCCCCceEEEcCCcccc
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYD-HVGARHRACLNNGGKNEIILSAGAIGS  278 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~-~~G~~~~v~~~~~aa~~VVLaaGa~~t  278 (570)
                      +...+.+.|++|++++.|++|+.+++     +|+||...+ .+|+...++     +|.||||+|+++.
T Consensus       125 L~~~~~~~gi~i~~~~~~~~Li~~~g-----~v~Ga~~~~~~~g~~~~i~-----AkaVILATGG~~~  182 (565)
T TIGR01816       125 LYQQNLKADTSFFNEYFALDLLMEDG-----ECRGVIAYCLETGEIHRFR-----AKAVVLATGGYGR  182 (565)
T ss_pred             HHHHHHhCCCEEEeccEEEEEEeeCC-----EEEEEEEEEcCCCcEEEEE-----eCeEEECCCCccc
Confidence            44556678999999999999998754     999999865 357666664     7999999999865

coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.26  E-value=5.2e-06  Score=88.89  Aligned_cols=35  Identities=14%  Similarity=0.231  Sum_probs=32.2

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      ...||+||||+|++|..+|.+|++ |++|+|+|+.+
T Consensus         2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~   37 (471)
T PRK06467          2 EIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYS   37 (471)
T ss_pred             CccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            346999999999999999999999 99999999864

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.24  E-value=9.2e-06  Score=87.15  Aligned_cols=34  Identities=38%  Similarity=0.621  Sum_probs=31.9

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKG   72 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G   72 (570)
                      ...||+||||||+||+.+|.+|++ |++|+|+|++
T Consensus         2 ~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~   36 (472)
T PRK05976          2 AKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG   36 (472)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc
Confidence            357999999999999999999999 9999999986

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=98.24  E-value=1.3e-05  Score=87.41  Aligned_cols=36  Identities=39%  Similarity=0.501  Sum_probs=33.4

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      ...+||+|||+|++|+++|..|++ |.+|+|+||.+.
T Consensus         8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~   44 (538)
T PRK06183          8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPT   44 (538)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            567999999999999999999999 999999999864

>PRK08244 hypothetical protein; Provisional

Probab=98.21  E-value=7.9e-06  Score=88.23  Aligned_cols=34  Identities=32%  Similarity=0.546  Sum_probs=32.0

Q ss_pred             cccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      +|||+|||+|++|+++|..|++ |.+|+||||.+.
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~   36 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKE   36 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            5899999999999999999999 999999999864

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=98.21  E-value=1.4e-05  Score=82.43  Aligned_cols=62  Identities=13%  Similarity=0.024  Sum_probs=47.4

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHHh
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLS  285 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~S  285 (570)
                      +...+++.|++++.+++|+++..+++     ++++|.+.  ++....+     .++.||||+|++.|..|+...
T Consensus       269 L~~~~~~~Gg~il~g~~V~~i~~~~~-----~v~~V~t~--~g~~~~l-----~AD~vVLAaGaw~S~gL~a~l  330 (419)
T TIGR03378       269 LKHRFEQLGGVMLPGDRVLRAEFEGN-----RVTRIHTR--NHRDIPL-----RADHFVLASGSFFSNGLVAEF  330 (419)
T ss_pred             HHHHHHHCCCEEEECcEEEEEEeeCC-----eEEEEEec--CCccceE-----ECCEEEEccCCCcCHHHHhhc
Confidence            34456778999999999999998876     88887764  3422344     378899999998788886654

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK06847 hypothetical protein; Provisional

Probab=98.17  E-value=7e-06  Score=85.38  Aligned_cols=35  Identities=31%  Similarity=0.425  Sum_probs=32.1

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      +..||+|||+|++|+++|..|++ |.+|+|+|+.+.
T Consensus         3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~   38 (375)
T PRK06847          3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE   38 (375)
T ss_pred             CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            45799999999999999999999 999999998753

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=98.16  E-value=1e-05  Score=84.46  Aligned_cols=33  Identities=36%  Similarity=0.602  Sum_probs=31.2

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      ||+|||+|++|+++|..|++ |.+|+|+||.+..
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~   34 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGLKIALIEATPAE   34 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCcc
Confidence            89999999999999999999 9999999999753

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.14  E-value=2.7e-05  Score=83.47  Aligned_cols=33  Identities=27%  Similarity=0.480  Sum_probs=31.2

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKG   72 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G   72 (570)
                      ++||+||||+|+||+.+|.+|++ |++|+|+|++
T Consensus         3 ~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~   36 (466)
T PRK07818          3 THYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK   36 (466)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence            36999999999999999999999 9999999986

>PRK07190 hypothetical protein; Provisional

Probab=98.12  E-value=2.3e-05  Score=84.08  Aligned_cols=36  Identities=19%  Similarity=0.283  Sum_probs=32.9

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      .+.+||||||+|++|+++|..|++ |.+|+||||.+.
T Consensus         3 ~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~   39 (487)
T PRK07190          3 TQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDG   39 (487)
T ss_pred             CccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence            346899999999999999999999 999999999864

>TIGR00136 gidA glucose-inhibited division protein A

Probab=98.12  E-value=2.2e-05  Score=84.38  Aligned_cols=32  Identities=38%  Similarity=0.706  Sum_probs=30.5

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      |||||||+|.+|+.+|..+++ |.+|+|+|+..
T Consensus         1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~   33 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNL   33 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCEEEEeccc
Confidence            799999999999999999999 99999999874

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.12  E-value=1.6e-05  Score=83.60  Aligned_cols=34  Identities=32%  Similarity=0.505  Sum_probs=31.4

Q ss_pred             cccEEEECCCCchhHHHHhhhc-c--CeEEEEccCCC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ-N--ATVLLLEKGGS   74 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~-g--~~VlvLE~G~~   74 (570)
                      .|||+|||+|++|+++|..|++ |  .+|+|+||.+.
T Consensus         1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~   37 (403)
T PRK07333          1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA   37 (403)
T ss_pred             CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence            3899999999999999999999 7  99999999863

>PRK06834 hypothetical protein; Provisional

Probab=98.11  E-value=2.8e-05  Score=83.53  Aligned_cols=34  Identities=29%  Similarity=0.464  Sum_probs=31.9

Q ss_pred             cccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      ++||||||+|++|+++|..|++ |.+|+||||.+.
T Consensus         3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~   37 (488)
T PRK06834          3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPN   37 (488)
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            5899999999999999999999 999999998863

>PRK06184 hypothetical protein; Provisional

Probab=98.10  E-value=3.9e-05  Score=83.02  Aligned_cols=35  Identities=34%  Similarity=0.541  Sum_probs=32.4

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      +++||+|||+|++|+++|..|++ |.+|+||||.+.
T Consensus         2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~   37 (502)
T PRK06184          2 TTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPE   37 (502)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            35899999999999999999999 999999999764

>PRK07045 putative monooxygenase; Reviewed

Probab=98.10  E-value=3.7e-05  Score=80.34  Aligned_cols=36  Identities=28%  Similarity=0.422  Sum_probs=33.3

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      +.++||+|||+|++|+++|..|++ |.+|+|+||.+.
T Consensus         3 ~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~   39 (388)
T PRK07045          3 NNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAAR   39 (388)
T ss_pred             CceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCc
Confidence            356899999999999999999999 999999999874

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=98.10  E-value=3.3e-05  Score=80.84  Aligned_cols=34  Identities=24%  Similarity=0.364  Sum_probs=31.9

Q ss_pred             cccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      .+||+|||+|++|+++|..|++ |.+|+|+||.+.
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~   36 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR   36 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence            5799999999999999999999 999999999863

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=98.10  E-value=1.5e-05  Score=76.54  Aligned_cols=39  Identities=38%  Similarity=0.492  Sum_probs=34.2

Q ss_pred             CCCCCcccEEEECCCCchhHHHHhhhc---cCeEEEEccCCC
Q 008331           36 APLISYYDYIIVGGGTSGCPLAATLSQ---NATVLLLEKGGS   74 (570)
Q Consensus        36 ~~~~~~~DvIIVGsG~aG~~~A~~La~---g~~VlvLE~G~~   74 (570)
                      ....+.||.||||+|..|++.|.+|.-   +++|+||||-..
T Consensus        43 s~s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~   84 (453)
T KOG2665|consen   43 SISKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKS   84 (453)
T ss_pred             ccccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhh
Confidence            344678999999999999999999975   799999999864

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=98.09  E-value=1.5e-05  Score=80.21  Aligned_cols=58  Identities=19%  Similarity=0.192  Sum_probs=46.9

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHH
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLM  283 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl  283 (570)
                      +.+.+++.|.+|++++.|++|+.|++     +++||...  +|++  ++     +|.||=.|+-+.|=.-|+
T Consensus       270 ia~~~~~~GaeI~tka~Vq~Illd~g-----ka~GV~L~--dG~e--v~-----sk~VvSNAt~~~Tf~kLl  327 (561)
T KOG4254|consen  270 IAEGAKRAGAEIFTKATVQSILLDSG-----KAVGVRLA--DGTE--VR-----SKIVVSNATPWDTFEKLL  327 (561)
T ss_pred             HHHHHHhccceeeehhhhhheeccCC-----eEEEEEec--CCcE--EE-----eeeeecCCchHHHHHHhC
Confidence            55678889999999999999999995     99999997  7865  43     588888888777753443

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=98.06  E-value=7.5e-06  Score=84.65  Aligned_cols=47  Identities=15%  Similarity=0.161  Sum_probs=37.5

Q ss_pred             CCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccc
Q 008331          217 DPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIG  277 (570)
Q Consensus       217 ~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~  277 (570)
                      ...|++|+.+ .|++|+.+++.    +|.||...  +|..  +     .++.|||++|+|-
T Consensus       112 ~~~NL~l~q~-~v~dli~e~~~----~v~GV~t~--~G~~--~-----~a~aVVlTTGTFL  158 (621)
T COG0445         112 NQPNLHLLQG-EVEDLIVEEGQ----RVVGVVTA--DGPE--F-----HAKAVVLTTGTFL  158 (621)
T ss_pred             cCCCceehHh-hhHHHhhcCCC----eEEEEEeC--CCCe--e-----ecCEEEEeecccc
Confidence            5679999776 78888887663    79999986  7864  3     4799999999983

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=98.06  E-value=4.5e-05  Score=77.40  Aligned_cols=193  Identities=17%  Similarity=0.190  Sum_probs=100.5

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc------cCeEEEEccCCCCCCCCCcccccccccccCCCCCCCCCcccccCCccccc
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ------NATVLLLEKGGSPYENPNITDTGNFATTLLDPSPTSPSQQFISEDGVYNA  112 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~------g~~VlvLE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (570)
                      ...||+||||+|++|+.+|++++.      .++|+++|+|.......   .+ ....   +       ......-. ...
T Consensus        16 ~~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g~~~~~r~---~~-~~~~---~-------~~~c~~~~-~~~   80 (486)
T COG2509          16 NAALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGLDIEQRL---CP-KDEK---K-------LEKCPKCD-PCP   80 (486)
T ss_pred             hhccceEEECCCchHHHHHHHHhhhcccCCceEEEEEEeccchhhhh---cc-cccc---c-------hhhcCCCC-Cce
Confidence            457999999999999999999995      36899999997543100   00 0000   0       00000000 011


Q ss_pred             CCceeccccccCceeee-CCCh-hhhhh--CCCChhhhhhhhHHHH----hhccCCCC----CcchHHHHH-HHHHHcCC
Q 008331          113 RARVLGGGSVINAGFYT-RASL-RYVRE--VGWTESLVNSSYEWVE----KKVAHEPP----MLQWQSAVR-DGLLEAGV  179 (570)
Q Consensus       113 ~g~~lGG~s~~~~~~~~-r~~~-~~~~~--~gw~~~~l~~~~~~~~----~~~~~~~~----~~~~~~~~~-~~~~~~G~  179 (570)
                      --.++||...+..+.+. +|.. .+++.  .+|.     .+++...    -++++...    ..+....+. ..++++|.
T Consensus        81 I~~G~GgaG~fs~g~lnl~P~~Gg~~~~~~~d~~-----~~~~~~~~vd~~~vqfG~~g~~~~~~~~e~ikd~e~~aa~a  155 (486)
T COG2509          81 IVIGFGGAGLFSDGILNLRPIRGGDVHERTKDTD-----EFWELVNLVDESNVQFGAPGAGTFSDLTEQIKDIEFRAAGA  155 (486)
T ss_pred             eEecccccccccccceecccccccchhhhhCChH-----HHHHHHhccchhheecCCCcCcccCCchhhhhHHHHHHhCC
Confidence            12367898888887765 3322 12111  1221     1111111    11122111    011122222 22333333


Q ss_pred             CC-CCCCCcCCCCcceeeeeEECCCCccccHHHhhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEE
Q 008331          180 LP-YNGFTFDHIYGTKVSGTIFDEDGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHR  258 (570)
Q Consensus       180 ~~-~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~  258 (570)
                      .. +-.     ....+.|     .+..+.-..++.+..+..|++++++|+|++|++.++     .+.+|...  +|..  
T Consensus       156 ~~eil~-----~~~rHiG-----TD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~-----~~~~v~~~--~g~~--  216 (486)
T COG2509         156 GEEILP-----IYQRHIG-----TDILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDN-----EVLGVKLT--KGEE--  216 (486)
T ss_pred             Cceeee-----ccccccC-----ccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCC-----ceEEEEcc--CCcE--
Confidence            11 000     0000010     122222333445566778999999999999999887     57777765  6754  


Q ss_pred             EEecCCCCceEEEcCCc
Q 008331          259 ACLNNGGKNEIILSAGA  275 (570)
Q Consensus       259 v~~~~~aa~~VVLaaGa  275 (570)
                      +     .++.||||-|-
T Consensus       217 i-----~~~~vvlA~Gr  228 (486)
T COG2509         217 I-----EADYVVLAPGR  228 (486)
T ss_pred             E-----ecCEEEEccCc
Confidence            3     37999999995

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=98.04  E-value=4.2e-05  Score=80.58  Aligned_cols=74  Identities=18%  Similarity=0.084  Sum_probs=53.0

Q ss_pred             eEECCCCccccHHH---hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCC
Q 008331          198 TIFDEDGHRHSAAD---LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAG  274 (570)
Q Consensus       198 ~~~~~~g~r~~~~~---~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaG  274 (570)
                      -+.+.+|.-.++..   +...|.+.|+.|+.+|.|++|....+     +..||++.  -|..        .+..||-|||
T Consensus       176 Ly~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~-----~~~gVeT~--~G~i--------et~~~VNaaG  240 (856)
T KOG2844|consen  176 LYSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVETD-----KFGGVETP--HGSI--------ETECVVNAAG  240 (856)
T ss_pred             eecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecC-----Cccceecc--Ccce--------ecceEEechh
Confidence            44456776655543   44577889999999999999998877     45589876  6753        3678999999


Q ss_pred             ccccHHHHHHhCC
Q 008331          275 AIGSPQLLMLSGV  287 (570)
Q Consensus       275 a~~tp~LLl~SGi  287 (570)
                      . |.-..-.++|+
T Consensus       241 v-WAr~Vg~m~gv  252 (856)
T KOG2844|consen  241 V-WAREVGAMAGV  252 (856)
T ss_pred             H-HHHHhhhhcCC
Confidence            6 55555555553

>PRK11445 putative oxidoreductase; Provisional

Probab=98.03  E-value=6.1e-05  Score=77.56  Aligned_cols=33  Identities=33%  Similarity=0.555  Sum_probs=30.6

Q ss_pred             ccEEEECCCCchhHHHHhhhccCeEEEEccCCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQNATVLLLEKGGS   74 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~g~~VlvLE~G~~   74 (570)
                      |||+|||+|+||+++|..|++..+|+||||.+.
T Consensus         2 ~dV~IvGaGpaGl~~A~~La~~~~V~liE~~~~   34 (351)
T PRK11445          2 YDVAIIGLGPAGSALARLLAGKMKVIAIDKKHQ   34 (351)
T ss_pred             ceEEEECCCHHHHHHHHHHhccCCEEEEECCCc
Confidence            899999999999999999988789999998864

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=98.01  E-value=2.7e-05  Score=81.37  Aligned_cols=32  Identities=41%  Similarity=0.613  Sum_probs=30.9

Q ss_pred             cccEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKG   72 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G   72 (570)
                      .+||+|||+|++|+++|..|++ |.+|+||||.
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~   34 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA   34 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence            5799999999999999999999 9999999997

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=98.01  E-value=7.4e-05  Score=81.77  Aligned_cols=36  Identities=31%  Similarity=0.488  Sum_probs=33.4

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      ..++||+|||+|++|+++|..|++ |.+|+|+||.+.
T Consensus        21 ~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~   57 (547)
T PRK08132         21 PARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDT   57 (547)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence            467999999999999999999999 999999999863

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.00  E-value=3.5e-05  Score=83.59  Aligned_cols=33  Identities=24%  Similarity=0.457  Sum_probs=30.6

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEcc
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEK   71 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~   71 (570)
                      .+.||++|||||++|+.+|.+|++ |++|+|+|+
T Consensus       209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~  242 (517)
T PRK15317        209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAE  242 (517)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence            457999999999999999999999 999999974

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=98.00  E-value=4.1e-06  Score=63.57  Aligned_cols=31  Identities=32%  Similarity=0.390  Sum_probs=28.1

Q ss_pred             EECCCCchhHHHHhhhc-cCeEEEEccCCCCC
Q 008331           46 IVGGGTSGCPLAATLSQ-NATVLLLEKGGSPY   76 (570)
Q Consensus        46 IVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~   76 (570)
                      |||+|++|+++|++|++ |.+|+|+||.+...
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~G   32 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLG   32 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccC
Confidence            89999999999999999 99999999998654

...

>TIGR02731 phytoene_desat phytoene desaturase

Probab=97.98  E-value=0.0002  Score=76.47  Aligned_cols=35  Identities=26%  Similarity=0.274  Sum_probs=32.0

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYE   77 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~   77 (570)
                      +|+|||+|.+|+++|++|++ |.+|+|+|+.+...+
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG   36 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGG   36 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Confidence            48999999999999999999 999999999886554

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=97.94  E-value=7e-05  Score=81.28  Aligned_cols=65  Identities=17%  Similarity=0.162  Sum_probs=52.4

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEec-CCceEEEEecCCCCceEEEcCCccccHHHHHHhCC
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDH-VGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGV  287 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~-~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGi  287 (570)
                      +...+.+.|++|+++++|++|..+++     ++.||++.+. +|+...++     ++.||+|||+ ++..|+...|+
T Consensus       134 l~~~A~~~Ga~i~~~t~V~~i~~~~~-----~v~gv~v~~~~~g~~~~i~-----a~~VVnAaG~-wa~~l~~~~g~  199 (516)
T TIGR03377       134 NVLDAQEHGARIFTYTKVTGLIREGG-----RVTGVKVEDHKTGEEERIE-----AQVVINAAGI-WAGRIAEYAGL  199 (516)
T ss_pred             HHHHHHHcCCEEEcCcEEEEEEEECC-----EEEEEEEEEcCCCcEEEEE-----cCEEEECCCc-chHHHHHhcCC
Confidence            44567788999999999999998765     8999998753 45555664     7999999998 78899887765

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=97.92  E-value=8.7e-06  Score=73.71  Aligned_cols=33  Identities=27%  Similarity=0.460  Sum_probs=29.9

Q ss_pred             cccEEEECCCCchhHHHHhhhc---cCeEEEEccCC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ---NATVLLLEKGG   73 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~---g~~VlvLE~G~   73 (570)
                      +-||||||+|.+|+++|+..+.   +++|.+||..-
T Consensus        76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SV  111 (328)
T KOG2960|consen   76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSV  111 (328)
T ss_pred             ccceEEECCCccccceeeeeeccCCCceEEEEEeee
Confidence            5699999999999999999996   69999999764

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=97.91  E-value=7.9e-06  Score=86.59  Aligned_cols=37  Identities=24%  Similarity=0.336  Sum_probs=33.8

Q ss_pred             CCCCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           37 PLISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        37 ~~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      ....+|||||||+|+||+++|..|++ |++|+||||..
T Consensus        35 ~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~   72 (450)
T PLN00093         35 LSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL   72 (450)
T ss_pred             cCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            44668999999999999999999999 99999999874

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=97.91  E-value=1e-05  Score=78.20  Aligned_cols=39  Identities=38%  Similarity=0.597  Sum_probs=35.5

Q ss_pred             cccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCCCC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYENP   79 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~~~   79 (570)
                      .||+||||||.+|+++|..|++ |.+|||+||-+..++|-
T Consensus         1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNa   40 (374)
T COG0562           1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNA   40 (374)
T ss_pred             CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCcc
Confidence            3899999999999999999999 99999999998887653

>PRK07236 hypothetical protein; Provisional

Probab=97.90  E-value=0.00029  Score=73.61  Aligned_cols=34  Identities=24%  Similarity=0.247  Sum_probs=31.8

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      ...||||||+|++|+++|..|++ |.+|+|+||.+
T Consensus         5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (386)
T PRK07236          5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSP   39 (386)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            45799999999999999999999 99999999885

>PRK07588 hypothetical protein; Provisional

Probab=97.89  E-value=3.1e-05  Score=81.05  Aligned_cols=32  Identities=28%  Similarity=0.356  Sum_probs=30.2

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      ||+|||+|++|+++|..|++ |.+|+|+||.+.
T Consensus         2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~   34 (391)
T PRK07588          2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE   34 (391)
T ss_pred             eEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence            79999999999999999999 999999999853

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=97.88  E-value=2e-05  Score=84.87  Aligned_cols=34  Identities=26%  Similarity=0.327  Sum_probs=28.2

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPY   76 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~   76 (570)
                      -|+|||||++|+++|..|.| |++|+++||.+..+
T Consensus         3 rVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iG   37 (531)
T PF00743_consen    3 RVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIG   37 (531)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSS
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCC
Confidence            48999999999999999999 99999999997654

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.84  E-value=7.1e-05  Score=78.31  Aligned_cols=35  Identities=23%  Similarity=0.391  Sum_probs=32.0

Q ss_pred             cccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      .-+|+|||||+||+++|+.|.+ |..|+|+||.+..
T Consensus         6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~i   41 (448)
T KOG1399|consen    6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDI   41 (448)
T ss_pred             CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCc
Confidence            3489999999999999999999 9999999999754

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=97.83  E-value=0.0001  Score=79.88  Aligned_cols=33  Identities=24%  Similarity=0.534  Sum_probs=30.4

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEcc
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEK   71 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~   71 (570)
                      ...|||+|||+|+||+.+|.+|++ |++|+|+|.
T Consensus       210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~  243 (515)
T TIGR03140       210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE  243 (515)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence            457999999999999999999999 999999963

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=97.83  E-value=1.2e-05  Score=85.52  Aligned_cols=34  Identities=35%  Similarity=0.683  Sum_probs=31.8

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      ++||+||||+|++|..+|.+|++ |++|+|+||+.
T Consensus         1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~   35 (450)
T TIGR01421         1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAKK   35 (450)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEecccc
Confidence            36999999999999999999999 99999999964

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=97.82  E-value=1e-05  Score=84.46  Aligned_cols=31  Identities=42%  Similarity=0.790  Sum_probs=30.2

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKG   72 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G   72 (570)
                      |||||||+|+||+++|+.|++ |++|+|||+.
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~   32 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARAGIETILLERA   32 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence            799999999999999999999 9999999997

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PTZ00058 glutathione reductase; Provisional

Probab=97.81  E-value=2e-05  Score=85.52  Aligned_cols=35  Identities=37%  Similarity=0.586  Sum_probs=32.6

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      ..+||+||||+|++|..+|.+|++ |++|+|+||+.
T Consensus        46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~   81 (561)
T PTZ00058         46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDY   81 (561)
T ss_pred             CccccEEEECcCHHHHHHHHHHHHcCCeEEEEeccc
Confidence            357999999999999999999999 99999999874

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=97.80  E-value=1.5e-05  Score=79.61  Aligned_cols=34  Identities=44%  Similarity=0.721  Sum_probs=31.9

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      |||+|||+|++|+++|..|++ |.+|+|+||....
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~   35 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFP   35 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence            799999999999999999999 9999999998643

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=97.77  E-value=1.7e-05  Score=84.42  Aligned_cols=32  Identities=28%  Similarity=0.501  Sum_probs=30.9

Q ss_pred             cccEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKG   72 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G   72 (570)
                      +||+||||+|+||..+|.+|++ |++|+|+|++
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~   34 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP   34 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence            6999999999999999999999 9999999985

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=97.76  E-value=1.7e-05  Score=81.44  Aligned_cols=35  Identities=34%  Similarity=0.590  Sum_probs=30.6

Q ss_pred             cccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      +|||||||+|++|+++|..|++ |.+|+|+||.+..
T Consensus         1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~   36 (356)
T PF01494_consen    1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDP   36 (356)
T ss_dssp             EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred             CceEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence            5899999999999999999999 9999999998653

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.73  E-value=0.00018  Score=76.94  Aligned_cols=31  Identities=35%  Similarity=0.648  Sum_probs=29.4

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      |+||||+|++|+.+|..|++ |.+|+|+|++.
T Consensus         3 ~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~   34 (466)
T PRK07845          3 RIVIIGGGPGGYEAALVAAQLGADVTVIERDG   34 (466)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence            79999999999999999999 99999999873

>PRK06116 glutathione reductase; Validated

Probab=97.69  E-value=2.7e-05  Score=83.02  Aligned_cols=34  Identities=35%  Similarity=0.581  Sum_probs=32.0

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      .+||+||||+|+||+.+|.+|++ |++|+|+|++.
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~~   37 (450)
T PRK06116          3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAKR   37 (450)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence            46999999999999999999999 99999999973

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=97.68  E-value=2.9e-05  Score=81.29  Aligned_cols=35  Identities=40%  Similarity=0.508  Sum_probs=32.7

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      .+.|||||||+|++|+++|..|++ |.+|+|+|+.+
T Consensus         3 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~   38 (391)
T PRK08020          3 NQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA   38 (391)
T ss_pred             cccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence            457999999999999999999999 99999999875

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.68  E-value=3e-05  Score=82.46  Aligned_cols=35  Identities=34%  Similarity=0.542  Sum_probs=32.5

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      ++||+||||+|++|+.+|.+|++ |++|+|+|+++.
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~   37 (441)
T PRK08010          2 NKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNA   37 (441)
T ss_pred             CcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCC
Confidence            36999999999999999999999 999999999853

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=97.67  E-value=3.1e-05  Score=80.97  Aligned_cols=37  Identities=38%  Similarity=0.607  Sum_probs=33.6

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      +.++||||||+|++|+++|..|++ |.+|+|+||++..
T Consensus         3 ~~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~   40 (388)
T PRK07608          3 HMKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPP   40 (388)
T ss_pred             CccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCc
Confidence            346899999999999999999999 9999999998653

>PRK06370 mercuric reductase; Validated

Probab=97.66  E-value=3.8e-05  Score=82.23  Aligned_cols=37  Identities=38%  Similarity=0.587  Sum_probs=33.4

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      ..+||+||||+|+||..+|.+|++ |++|+|+|++...
T Consensus         3 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~G   40 (463)
T PRK06370          3 AQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGLLG   40 (463)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCccC
Confidence            456999999999999999999999 9999999997543

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.66  E-value=3.1e-05  Score=82.95  Aligned_cols=35  Identities=31%  Similarity=0.454  Sum_probs=32.6

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      ..+||+||||+|+||+.+|.+|++ |.+|+|+|++.
T Consensus         2 ~~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~   37 (462)
T PRK06416          2 AFEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK   37 (462)
T ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc
Confidence            357999999999999999999999 99999999875

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=97.65  E-value=4.5e-05  Score=81.01  Aligned_cols=50  Identities=20%  Similarity=0.204  Sum_probs=35.1

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCc
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGA  275 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa  275 (570)
                      ++..+.+.|++++.+ +|+++..++++    .+++|+..  +|+  ++.     ++-||=|+|.
T Consensus       160 L~~~A~~~Gv~~~~g-~V~~v~~~~~g----~i~~v~~~--~g~--~i~-----ad~~IDASG~  209 (454)
T PF04820_consen  160 LRRHAEERGVEVIEG-TVVDVELDEDG----RITAVRLD--DGR--TIE-----ADFFIDASGR  209 (454)
T ss_dssp             HHHHHHHTT-EEEET--EEEEEE-TTS----EEEEEEET--TSE--EEE-----ESEEEE-SGG
T ss_pred             HHHHHhcCCCEEEeC-EEEEEEEcCCC----CEEEEEEC--CCC--EEE-----EeEEEECCCc
Confidence            345677779999988 58888888765    88888876  564  343     7999999995

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PRK05868 hypothetical protein; Validated

Probab=97.65  E-value=0.00065  Score=70.52  Aligned_cols=32  Identities=19%  Similarity=0.320  Sum_probs=30.3

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      ||+|||+|++|+++|..|++ |.+|+|+||.+.
T Consensus         3 ~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~   35 (372)
T PRK05868          3 TVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG   35 (372)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence            89999999999999999999 999999999864

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.65  E-value=3.6e-05  Score=82.34  Aligned_cols=32  Identities=34%  Similarity=0.528  Sum_probs=30.5

Q ss_pred             cccEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKG   72 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G   72 (570)
                      +||+||||+|+||+.+|.+|++ |++|+|+|+.
T Consensus         3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~   35 (466)
T PRK06115          3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGR   35 (466)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence            5999999999999999999999 9999999974

>TIGR02028 ChlP geranylgeranyl reductase

Probab=97.64  E-value=2.9e-05  Score=81.27  Aligned_cols=32  Identities=34%  Similarity=0.573  Sum_probs=30.3

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      +||||||+|++|+++|..|++ |++|+||||..
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~   33 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKP   33 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCC
Confidence            699999999999999999999 99999999864

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PTZ00367 squalene epoxidase; Provisional

Probab=97.63  E-value=4.9e-05  Score=82.55  Aligned_cols=35  Identities=46%  Similarity=0.586  Sum_probs=32.6

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      +.+|||||||+|++|+++|..|++ |.+|+|+||..
T Consensus        31 ~~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~   66 (567)
T PTZ00367         31 NYDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL   66 (567)
T ss_pred             ccCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence            457999999999999999999999 99999999875

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=97.62  E-value=4.1e-05  Score=78.61  Aligned_cols=36  Identities=50%  Similarity=0.680  Sum_probs=33.0

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYE   77 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~   77 (570)
                      +|++|||||.+|+++|.+|++ |.+|+|||+....++
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG   38 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGG   38 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCC
Confidence            799999999999999999999 999999999776554

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PRK09126 hypothetical protein; Provisional

Probab=97.62  E-value=3.5e-05  Score=80.65  Aligned_cols=34  Identities=29%  Similarity=0.482  Sum_probs=32.4

Q ss_pred             cccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      +|||||||+|++|+++|..|++ |.+|+|+||.+.
T Consensus         3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~   37 (392)
T PRK09126          3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL   37 (392)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence            5899999999999999999999 999999999975

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=97.62  E-value=4.5e-05  Score=81.70  Aligned_cols=38  Identities=21%  Similarity=0.364  Sum_probs=33.9

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPY   76 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~   76 (570)
                      ...||+||||+|++|+.+|.+|++ |++|+|+|+++...
T Consensus         3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~G   41 (461)
T PRK05249          3 MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVG   41 (461)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCEEEEEecccccc
Confidence            346999999999999999999999 99999999975443

>PRK08013 oxidoreductase; Provisional

Probab=97.61  E-value=4e-05  Score=80.46  Aligned_cols=34  Identities=32%  Similarity=0.456  Sum_probs=32.2

Q ss_pred             cccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      +|||||||+|++|+++|..|++ |++|+||||.+.
T Consensus         3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~   37 (400)
T PRK08013          3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP   37 (400)
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence            5899999999999999999999 999999999874

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.61  E-value=4.2e-05  Score=81.33  Aligned_cols=34  Identities=38%  Similarity=0.602  Sum_probs=32.2

Q ss_pred             cccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      +||+||||||+||+.+|.+|++ |.+|+|+||++.
T Consensus         3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~   37 (438)
T PRK07251          3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKA   37 (438)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCc
Confidence            6999999999999999999999 999999999863

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=97.60  E-value=4.2e-05  Score=80.42  Aligned_cols=33  Identities=42%  Similarity=0.608  Sum_probs=31.5

Q ss_pred             cccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      +|||+|||+|++|+++|..|++ |.+|+|+|+.+
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~   35 (405)
T PRK05714          2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGP   35 (405)
T ss_pred             CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence            5899999999999999999999 99999999986

>PLN02546 glutathione reductase

Probab=97.59  E-value=4.3e-05  Score=82.99  Aligned_cols=33  Identities=21%  Similarity=0.320  Sum_probs=30.9

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEcc
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEK   71 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~   71 (570)
                      ..+|||||||+|++|..+|.+|++ |+||+|+|+
T Consensus        77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~  110 (558)
T PLN02546         77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCEL  110 (558)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            346999999999999999999999 999999996

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.59  E-value=5.6e-05  Score=80.47  Aligned_cols=40  Identities=25%  Similarity=0.262  Sum_probs=35.9

Q ss_pred             CCCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCC
Q 008331           38 LISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYE   77 (570)
Q Consensus        38 ~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~   77 (570)
                      ..+..+|||||||.+|++||..|.+ |.+|+|||+-++.++
T Consensus        12 ~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGG   52 (501)
T KOG0029|consen   12 AGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGG   52 (501)
T ss_pred             ccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCc
Confidence            3557899999999999999999999 999999999887664

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.59  E-value=0.00027  Score=69.04  Aligned_cols=59  Identities=15%  Similarity=0.216  Sum_probs=47.8

Q ss_pred             CCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecC-CceEEEEecCCCCceEEEcCCccccHHHHHHh
Q 008331          217 DPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHV-GARHRACLNNGGKNEIILSAGAIGSPQLLMLS  285 (570)
Q Consensus       217 ~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~-G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~S  285 (570)
                      .-+|++|++|+.-++|.-|++     +|+|..|+|+. |+.+.+.     =..|.+--|-+-++.+|.-+
T Consensus       401 sl~Nv~ii~na~Ttei~Gdg~-----kV~Gl~Y~dr~sge~~~l~-----LeGvFVqIGL~PNT~WLkg~  460 (520)
T COG3634         401 SLPNVTIITNAQTTEVKGDGD-----KVTGLEYRDRVSGEEHHLE-----LEGVFVQIGLLPNTEWLKGA  460 (520)
T ss_pred             cCCCcEEEecceeeEEecCCc-----eecceEEEeccCCceeEEE-----eeeeEEEEecccChhHhhch
Confidence            347999999999999988766     99999999865 6666664     36788888888888888755

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=97.58  E-value=5.6e-05  Score=79.01  Aligned_cols=36  Identities=28%  Similarity=0.437  Sum_probs=32.9

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      .+.|||||||+|++|+++|..|++ |.+|+|+|+.+.
T Consensus         5 ~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~   41 (388)
T PRK07494          5 KEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPP   41 (388)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence            446899999999999999999999 999999999753

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=97.58  E-value=5e-05  Score=79.72  Aligned_cols=35  Identities=34%  Similarity=0.596  Sum_probs=32.8

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      ..+||+||||+|++|-++|.+|++ |+||+++|+++
T Consensus         2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~   37 (454)
T COG1249           2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGE   37 (454)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecC
Confidence            457999999999999999999999 98899999995

>PLN02463 lycopene beta cyclase

Probab=97.56  E-value=5.7e-05  Score=79.76  Aligned_cols=35  Identities=26%  Similarity=0.487  Sum_probs=32.3

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      ...|||||||+|+||+++|..|++ |++|+|||+.+
T Consensus        26 ~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~   61 (447)
T PLN02463         26 SRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSP   61 (447)
T ss_pred             ccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCc
Confidence            446999999999999999999999 99999999864

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=97.55  E-value=6.3e-05  Score=80.54  Aligned_cols=33  Identities=36%  Similarity=0.639  Sum_probs=31.1

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKG   72 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G   72 (570)
                      ++||+||||||++|+.+|.+|++ |++|+|+|++
T Consensus         2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~   35 (460)
T PRK06292          2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKG   35 (460)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            46999999999999999999999 9999999994

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.55  E-value=0.00036  Score=68.30  Aligned_cols=34  Identities=32%  Similarity=0.615  Sum_probs=32.0

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKG   72 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G   72 (570)
                      ...||++|||+|.+|..+|+++|+ |.||.|+|..
T Consensus        18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~   52 (478)
T KOG0405|consen   18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELP   52 (478)
T ss_pred             ccccceEEEcCCcchhHHhHHHHhcCceEEEEecC
Confidence            458999999999999999999999 9999999976

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=97.54  E-value=0.0014  Score=68.06  Aligned_cols=58  Identities=21%  Similarity=0.331  Sum_probs=46.8

Q ss_pred             hcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCcc
Q 008331          215 YADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAI  276 (570)
Q Consensus       215 ~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~  276 (570)
                      ..+..||++..+++|++|.++.++ +.+.++++++. .+|+...|.+.  ..+.|++.-|.+
T Consensus       216 ~L~~~GV~F~~~t~V~di~~~~~~-~~~~~~~i~~~-~~g~~~~i~l~--~~DlV~vT~GS~  273 (500)
T PF06100_consen  216 YLKSQGVDFRFNTKVTDIDFDITG-DKKTATRIHIE-QDGKEETIDLG--PDDLVFVTNGSM  273 (500)
T ss_pred             HHHHCCCEEECCCEEEEEEEEccC-CCeeEEEEEEE-cCCCeeEEEeC--CCCEEEEECCcc
Confidence            556789999999999999998654 44578888887 57877776654  789999999975

>PRK14694 putative mercuric reductase; Provisional

Probab=97.54  E-value=6.4e-05  Score=80.55  Aligned_cols=36  Identities=25%  Similarity=0.360  Sum_probs=33.5

Q ss_pred             CCCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           38 LISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        38 ~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      ....||+||||+|+||+++|.+|++ |++|+|+|++.
T Consensus         3 ~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~   39 (468)
T PRK14694          3 SDNNLHIAVIGSGGSAMAAALKATERGARVTLIERGT   39 (468)
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc
Confidence            3568999999999999999999999 99999999975

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=97.54  E-value=6.1e-05  Score=83.02  Aligned_cols=33  Identities=24%  Similarity=0.384  Sum_probs=31.3

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKG   72 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G   72 (570)
                      ++||+||||+|++|..+|.++++ |+||+|+|++
T Consensus       115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~  148 (659)
T PTZ00153        115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGD  148 (659)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            47999999999999999999999 9999999975

>PLN02676 polyamine oxidase

Probab=97.54  E-value=0.00012  Score=78.56  Aligned_cols=39  Identities=36%  Similarity=0.382  Sum_probs=34.6

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cC-eEEEEccCCCCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NA-TVLLLEKGGSPYE   77 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~-~VlvLE~G~~~~~   77 (570)
                      ...+||||||+|.+|+++|++|++ |. +|+|||+.+...+
T Consensus        24 ~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG   64 (487)
T PLN02676         24 KPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGG   64 (487)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCC
Confidence            446799999999999999999999 97 6999999887654

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=97.53  E-value=6.5e-05  Score=80.46  Aligned_cols=32  Identities=38%  Similarity=0.617  Sum_probs=30.5

Q ss_pred             cccEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKG   72 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G   72 (570)
                      +||+||||||++|+.+|.+|++ |.+|+|+|++
T Consensus         1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~~   33 (461)
T TIGR01350         1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEKE   33 (461)
T ss_pred             CccEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence            4899999999999999999999 9999999993

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=97.53  E-value=0.00023  Score=72.56  Aligned_cols=63  Identities=24%  Similarity=0.324  Sum_probs=38.1

Q ss_pred             HHhhh-hcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHH
Q 008331          210 ADLLE-YADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQL  281 (570)
Q Consensus       210 ~~~l~-~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~L  281 (570)
                      ..|+. .+++-.-.+..+++|++|..+.++ +. ....|++++.+|....+.     ++.||||+|  .+|.+
T Consensus        98 ~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~-~~-~~~~V~~~~~~g~~~~~~-----ar~vVla~G--~~P~i  161 (341)
T PF13434_consen   98 NDYLRWVAEQLDNQVRYGSEVTSIEPDDDG-DE-DLFRVTTRDSDGDGETYR-----ARNVVLATG--GQPRI  161 (341)
T ss_dssp             HHHHHHHHCCGTTTEEESEEEEEEEEEEET-TE-EEEEEEEEETTS-EEEEE-----ESEEEE------EE--
T ss_pred             HHHHHHHHHhCCCceEECCEEEEEEEecCC-Cc-cEEEEEEeecCCCeeEEE-----eCeEEECcC--CCCCC
Confidence            34555 445555458899999999987752 11 456677766677666664     799999999  45543

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.53  E-value=5.9e-05  Score=75.24  Aligned_cols=34  Identities=41%  Similarity=0.685  Sum_probs=30.3

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCe-EEEEccCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NAT-VLLLEKGG   73 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~-VlvLE~G~   73 (570)
                      +.|||||||||+||++||..+++ +++ ++|+|++.
T Consensus         2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~   37 (305)
T COG0492           2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGE   37 (305)
T ss_pred             ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCC
Confidence            46999999999999999999999 988 77777764

>PRK13748 putative mercuric reductase; Provisional

Probab=97.52  E-value=6.9e-05  Score=82.37  Aligned_cols=34  Identities=24%  Similarity=0.372  Sum_probs=32.0

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      .+||+||||+|++|+.+|.+|++ |++|+|+|++.
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~~  131 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERGT  131 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCc
Confidence            46999999999999999999999 99999999873

>PRK09897 hypothetical protein; Provisional

Probab=97.52  E-value=0.00067  Score=73.03  Aligned_cols=34  Identities=24%  Similarity=0.346  Sum_probs=29.6

Q ss_pred             ccEEEECCCCchhHHHHhhhc-c--CeEEEEccCCCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-N--ATVLLLEKGGSP   75 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g--~~VlvLE~G~~~   75 (570)
                      .+|+|||+|++|+.+|.+|.+ +  ++|.|+|++...
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~   38 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEA   38 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCC
Confidence            479999999999999999987 3  699999997643

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=97.51  E-value=6.5e-05  Score=78.41  Aligned_cols=33  Identities=33%  Similarity=0.615  Sum_probs=31.2

Q ss_pred             cccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      +|||+|||+|++|+++|..|++ |.+|+|+|+.+
T Consensus         3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~   36 (384)
T PRK08849          3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE   36 (384)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            4899999999999999999999 99999999875

>PLN02507 glutathione reductase

Probab=97.49  E-value=5.7e-05  Score=81.37  Aligned_cols=33  Identities=24%  Similarity=0.347  Sum_probs=31.3

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEcc
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEK   71 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~   71 (570)
                      ..+||+||||+|++|..+|.+|++ |+||+|+|+
T Consensus        23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~   56 (499)
T PLN02507         23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICEL   56 (499)
T ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            457999999999999999999999 999999996

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=97.48  E-value=8.3e-05  Score=77.73  Aligned_cols=32  Identities=31%  Similarity=0.574  Sum_probs=30.4

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      ||||||+|++|+++|+.|++ |++|+|||+.+.
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~   33 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPP   33 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCC
Confidence            89999999999999999999 999999999864

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>TIGR02053 MerA mercuric reductase

Probab=97.48  E-value=7.3e-05  Score=80.07  Aligned_cols=33  Identities=30%  Similarity=0.611  Sum_probs=31.2

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      ||+||||||++|..+|.+|++ |++|+|+|++..
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~~   34 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGPL   34 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCcc
Confidence            799999999999999999999 999999999753

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=97.48  E-value=8e-05  Score=80.45  Aligned_cols=36  Identities=31%  Similarity=0.468  Sum_probs=33.5

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYE   77 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~   77 (570)
                      -||||||||.+|+++|..|++ |++|+||||....++
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG   38 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGG   38 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence            589999999999999999999 999999999987654

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=97.47  E-value=7.7e-05  Score=81.51  Aligned_cols=35  Identities=31%  Similarity=0.575  Sum_probs=32.3

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      +.|||||||||+||+.+|.+|++ |++|+|+|++..
T Consensus         3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~   38 (555)
T TIGR03143         3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDF   38 (555)
T ss_pred             CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Confidence            45999999999999999999999 999999999753

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=97.45  E-value=5.6e-05  Score=71.94  Aligned_cols=61  Identities=16%  Similarity=0.218  Sum_probs=42.5

Q ss_pred             hcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHHhCC
Q 008331          215 YADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGV  287 (570)
Q Consensus       215 ~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGi  287 (570)
                      +.++.|++++.+ +|..+. |+.+    |+++|-.....+..+..     ....+|||+|. ||++||..-+|
T Consensus       157 a~k~~~V~lv~G-kv~ev~-dEk~----r~n~v~~ae~~~ti~~~-----d~~~ivvsaGP-WTskllp~~rI  217 (380)
T KOG2852|consen  157 AEKRGGVKLVFG-KVKEVS-DEKH----RINSVPKAEAEDTIIKA-----DVHKIVVSAGP-WTSKLLPFTRI  217 (380)
T ss_pred             HHhhcCeEEEEe-eeEEee-cccc----cccccchhhhcCceEEe-----eeeEEEEecCC-Cchhhcccccc
Confidence            445667999988 777776 4343    88887765323333333     36889999999 99999987654

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=97.45  E-value=8.8e-05  Score=76.98  Aligned_cols=32  Identities=41%  Similarity=0.646  Sum_probs=29.8

Q ss_pred             cEEEECCCCchhHHHHhh--hc-cCeEEEEccCCC
Q 008331           43 DYIIVGGGTSGCPLAATL--SQ-NATVLLLEKGGS   74 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~L--a~-g~~VlvLE~G~~   74 (570)
                      ||||||+|+||+++|.+|  ++ |.+|+|||+...
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~   35 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPK   35 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCcc
Confidence            899999999999999999  66 999999998764

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=97.45  E-value=8.5e-05  Score=74.49  Aligned_cols=32  Identities=34%  Similarity=0.553  Sum_probs=30.6

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      ||++|||+|++|+.+|..|++ |.+|+|+|++.
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~   33 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME   33 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC
Confidence            799999999999999999999 99999999885

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=97.42  E-value=9.7e-05  Score=79.30  Aligned_cols=32  Identities=25%  Similarity=0.456  Sum_probs=30.8

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEcc
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEK   71 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~   71 (570)
                      .+||+||||+|++|+.+|.+|++ |++|+|+|+
T Consensus         3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~   35 (475)
T PRK06327          3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA   35 (475)
T ss_pred             cceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence            47999999999999999999999 999999998

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=97.41  E-value=9.8e-05  Score=77.17  Aligned_cols=34  Identities=26%  Similarity=0.400  Sum_probs=31.9

Q ss_pred             cccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      .+||+|||+|++|+++|..|++ |.+|+|+||.+.
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~   36 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR   36 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            5799999999999999999999 999999999863

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=97.41  E-value=0.00013  Score=78.18  Aligned_cols=33  Identities=15%  Similarity=0.408  Sum_probs=30.9

Q ss_pred             CcccEEEECCCCchhHHHHhhhc--cCeEEEEccC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ--NATVLLLEKG   72 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~--g~~VlvLE~G   72 (570)
                      .+||+||||+|++|..+|.++++  |++|+|+|++
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~   36 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ   36 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence            46999999999999999999999  6999999985

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=97.41  E-value=0.0001  Score=77.44  Aligned_cols=32  Identities=34%  Similarity=0.568  Sum_probs=30.7

Q ss_pred             cccEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKG   72 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G   72 (570)
                      .+||+|||+|++|+++|..|++ |.+|+|+|+.
T Consensus         4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~   36 (405)
T PRK08850          4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ   36 (405)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence            5899999999999999999999 9999999986

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=97.40  E-value=0.00011  Score=76.61  Aligned_cols=33  Identities=42%  Similarity=0.654  Sum_probs=31.0

Q ss_pred             cEEEECCCCchhHHHHhhhc-c-CeEEEEccCCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-N-ATVLLLEKGGSP   75 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g-~~VlvLE~G~~~   75 (570)
                      ||||||+|++|+++|..|++ | .+|+|+||.+..
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~   35 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPS   35 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCcc
Confidence            89999999999999999999 9 999999998643

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.38  E-value=0.00011  Score=76.30  Aligned_cols=32  Identities=25%  Similarity=0.378  Sum_probs=30.7

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      +||+|||+|++|+++|..|++ |.+|+|+|+.+
T Consensus         2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~   34 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKS   34 (374)
T ss_pred             ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCC
Confidence            799999999999999999999 99999999875

>PLN02268 probable polyamine oxidase

Probab=97.37  E-value=0.00013  Score=77.39  Aligned_cols=35  Identities=31%  Similarity=0.435  Sum_probs=32.9

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYE   77 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~   77 (570)
                      +|||||+|.+|+++|++|.+ |.+|+|||+.++.++
T Consensus         2 ~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GG   37 (435)
T PLN02268          2 SVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGG   37 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCc
Confidence            79999999999999999999 999999999988765

>PTZ00052 thioredoxin reductase; Provisional

Probab=97.36  E-value=0.00013  Score=78.63  Aligned_cols=33  Identities=27%  Similarity=0.531  Sum_probs=30.9

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKG   72 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G   72 (570)
                      ..||+||||+|+||+.+|.+|++ |++|+|+|++
T Consensus         4 ~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~   37 (499)
T PTZ00052          4 FMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV   37 (499)
T ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence            36999999999999999999999 9999999973

>PRK14727 putative mercuric reductase; Provisional

Probab=97.29  E-value=0.0002  Score=76.99  Aligned_cols=36  Identities=19%  Similarity=0.278  Sum_probs=32.9

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      .+||+||||+|++|..+|.+|++ |.+|+|+|++...
T Consensus        15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~   51 (479)
T PRK14727         15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVI   51 (479)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcc
Confidence            46999999999999999999999 9999999997533

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=97.29  E-value=0.00023  Score=72.67  Aligned_cols=39  Identities=31%  Similarity=0.294  Sum_probs=35.3

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYE   77 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~   77 (570)
                      .+..||||||+|.+||++|++|.+ |++|+|||..+...+
T Consensus         5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GG   44 (450)
T COG1231           5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGG   44 (450)
T ss_pred             CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCc
Confidence            567899999999999999999999 999999999876553

>PRK10262 thioredoxin reductase; Provisional

Probab=97.28  E-value=0.00018  Score=73.02  Aligned_cols=35  Identities=20%  Similarity=0.284  Sum_probs=32.2

Q ss_pred             CCCcccEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331           38 LISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKG   72 (570)
Q Consensus        38 ~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G   72 (570)
                      ..+.+||+|||+|+||+.+|..|++ |.+|+++|+.
T Consensus         3 ~~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~   38 (321)
T PRK10262          3 TTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM   38 (321)
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee
Confidence            4678999999999999999999999 9999999864

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=97.27  E-value=0.00018  Score=76.72  Aligned_cols=35  Identities=31%  Similarity=0.430  Sum_probs=31.9

Q ss_pred             cEEEECCCCchhHHHHhhhc-c--CeEEEEccCCCCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-N--ATVLLLEKGGSPYE   77 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g--~~VlvLE~G~~~~~   77 (570)
                      +|+|||||.+|+++|++|++ |  .+|+|||+.+..++
T Consensus         2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GG   39 (451)
T PRK11883          2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGG   39 (451)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcc
Confidence            58999999999999999999 8  89999999877654

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=97.27  E-value=0.00077  Score=68.81  Aligned_cols=54  Identities=19%  Similarity=0.246  Sum_probs=41.7

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHH
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQL  281 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~L  281 (570)
                      ++..+.+.|++++.+++|+.|..+++     ++++|...  +|   ++     .++.||+|+|+ ++++|
T Consensus       143 l~~~~~~~g~~~~~~~~v~~i~~~~~-----~~~~v~~~--~g---~~-----~a~~vV~a~G~-~~~~l  196 (337)
T TIGR02352       143 LEKALEKLGVEIIEHTEVQHIEIRGE-----KVTAIVTP--SG---DV-----QADQVVLAAGA-WAGEL  196 (337)
T ss_pred             HHHHHHHcCCEEEccceEEEEEeeCC-----EEEEEEcC--CC---EE-----ECCEEEEcCCh-hhhhc
Confidence            45567788999999999999998665     78888653  45   24     37999999998 56654

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>PRK07233 hypothetical protein; Provisional

Probab=97.26  E-value=0.0002  Score=75.94  Aligned_cols=35  Identities=29%  Similarity=0.377  Sum_probs=32.7

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYE   77 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~   77 (570)
                      +|||||||.+|+++|+.|++ |.+|+|||+.+..++
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG   36 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGG   36 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCC
Confidence            58999999999999999999 999999999987765

>PRK08163 salicylate hydroxylase; Provisional

Probab=97.25  E-value=0.00021  Score=74.89  Aligned_cols=35  Identities=34%  Similarity=0.506  Sum_probs=32.3

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      .+.||+|||+|++|+++|..|++ |.+|+|+||.+.
T Consensus         3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~   38 (396)
T PRK08163          3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE   38 (396)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence            45799999999999999999999 999999999863

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=97.24  E-value=0.0002  Score=74.89  Aligned_cols=33  Identities=30%  Similarity=0.598  Sum_probs=31.4

Q ss_pred             cccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      +||+||||+|.+|+++|..|++ |++|+|+|++.
T Consensus         2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~   35 (422)
T PRK05329          2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ   35 (422)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence            5899999999999999999999 99999999984

>PRK06996 hypothetical protein; Provisional

Probab=97.24  E-value=0.00024  Score=74.45  Aligned_cols=35  Identities=29%  Similarity=0.488  Sum_probs=31.7

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-c----CeEEEEccCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-N----ATVLLLEKGG   73 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g----~~VlvLE~G~   73 (570)
                      .++|||+|||+|++|+++|..|++ |    ++|+|+|+.+
T Consensus         9 ~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~   48 (398)
T PRK06996          9 APDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE   48 (398)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence            557899999999999999999998 7    4799999975

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=97.22  E-value=0.0002  Score=76.00  Aligned_cols=32  Identities=47%  Similarity=0.767  Sum_probs=29.9

Q ss_pred             ccEEEECCCCchhHHHHhhhc-----cCeEEEEccCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-----NATVLLLEKGG   73 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-----g~~VlvLE~G~   73 (570)
                      |||||||+|++|+++|..|++     |.+|+|+|+.+
T Consensus         1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~   37 (437)
T TIGR01989         1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD   37 (437)
T ss_pred             CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence            799999999999999999996     89999999964

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.18  E-value=0.00025  Score=74.21  Aligned_cols=33  Identities=48%  Similarity=0.632  Sum_probs=30.4

Q ss_pred             CcccEEEECCCCchhHHHHhhhc----cCeEEEEccC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ----NATVLLLEKG   72 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~----g~~VlvLE~G   72 (570)
                      +.+||+|||+|++|+++|..|++    |.+|+|+||-
T Consensus         2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~   38 (395)
T PRK05732          2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF   38 (395)
T ss_pred             CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence            45899999999999999999975    8999999985

>PRK06753 hypothetical protein; Provisional

Probab=97.18  E-value=0.00024  Score=73.73  Aligned_cols=32  Identities=34%  Similarity=0.482  Sum_probs=30.5

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      ||+|||+|++|+++|..|++ |.+|+|+||.+.
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~   34 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES   34 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence            79999999999999999999 999999999974

>PLN02576 protoporphyrinogen oxidase

Probab=97.17  E-value=0.00036  Score=75.51  Aligned_cols=39  Identities=31%  Similarity=0.320  Sum_probs=34.6

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc--cCeEEEEccCCCCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ--NATVLLLEKGGSPYE   77 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~--g~~VlvLE~G~~~~~   77 (570)
                      ...+||+|||||.+|+++|++|++  |.+|+|||+.+..++
T Consensus        10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGG   50 (496)
T PLN02576         10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGG   50 (496)
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCC
Confidence            445799999999999999999998  799999999987654

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=97.16  E-value=0.0055  Score=60.34  Aligned_cols=39  Identities=26%  Similarity=0.261  Sum_probs=34.5

Q ss_pred             cccEEEECCCCchhHHHHhhhccCeEEEEccCCCCCCCC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQNATVLLLEKGGSPYENP   79 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~g~~VlvLE~G~~~~~~~   79 (570)
                      .-++-|||+|.+|+++|+.|+.-.+|.+.|++...++..
T Consensus         8 r~~IAVIGsGisGLSAA~~Ls~rhdVTLfEA~~rlGGha   46 (447)
T COG2907           8 RRKIAVIGSGISGLSAAWLLSRRHDVTLFEADRRLGGHA   46 (447)
T ss_pred             CcceEEEcccchhhhhHHhhhcccceEEEeccccccCcc
Confidence            347999999999999999999989999999999876533

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=97.15  E-value=0.00034  Score=72.44  Aligned_cols=32  Identities=38%  Similarity=0.651  Sum_probs=29.9

Q ss_pred             cEEEECCCCchhHHHHhhhc---cCeEEEEccCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ---NATVLLLEKGGS   74 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~---g~~VlvLE~G~~   74 (570)
                      ||||||+|+||+++|.+|++   |++|+|||+++.
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~   35 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRT   35 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            89999999999999999986   899999999864

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.14  E-value=0.00031  Score=65.92  Aligned_cols=31  Identities=42%  Similarity=0.734  Sum_probs=29.2

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      ||||||+|+||+.+|.+|++ +.+|+|+|+.+
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~   32 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP   32 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence            79999999999999999999 99999998765

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=97.10  E-value=0.018  Score=60.39  Aligned_cols=34  Identities=32%  Similarity=0.421  Sum_probs=30.0

Q ss_pred             ccEEEECCCCchhHHHHhhhc-c--CeEEEEccCCCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-N--ATVLLLEKGGSP   75 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g--~~VlvLE~G~~~   75 (570)
                      .+|||||+|+||+.+|..|++ |  .+|+|+++.+..
T Consensus         4 ~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~   40 (396)
T PRK09754          4 KTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHL   40 (396)
T ss_pred             CcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCC
Confidence            479999999999999999998 6  489999988654

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.09  E-value=0.00034  Score=75.11  Aligned_cols=32  Identities=38%  Similarity=0.643  Sum_probs=30.5

Q ss_pred             cccEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKG   72 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G   72 (570)
                      +||+||||+|++|..+|.+|++ |++|+|+|+.
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~   34 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV   34 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            5899999999999999999999 9999999974

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=97.08  E-value=0.00039  Score=72.35  Aligned_cols=34  Identities=26%  Similarity=0.250  Sum_probs=32.3

Q ss_pred             EEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCC
Q 008331           44 YIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYE   77 (570)
Q Consensus        44 vIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~   77 (570)
                      |+|+|+|.||+++|++||+ |++|.|+|++++.++
T Consensus         3 Vai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GG   37 (485)
T COG3349           3 VAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGG   37 (485)
T ss_pred             EEEEcccHHHHHHHHHHHhCCCceEEEeccCccCc
Confidence            8999999999999999999 999999999998765

>PLN02568 polyamine oxidase

Probab=97.08  E-value=0.00047  Score=74.74  Aligned_cols=38  Identities=21%  Similarity=0.272  Sum_probs=34.0

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-c-----CeEEEEccCCCCCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-N-----ATVLLLEKGGSPYE   77 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g-----~~VlvLE~G~~~~~   77 (570)
                      +..||||||+|.+|+++|.+|++ |     .+|+|||+.....+
T Consensus         4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GG   47 (539)
T PLN02568          4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGG   47 (539)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCC
Confidence            35799999999999999999998 7     89999999987654

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=97.07  E-value=0.0037  Score=65.18  Aligned_cols=54  Identities=22%  Similarity=0.276  Sum_probs=38.1

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHH
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLL  282 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LL  282 (570)
                      +...+.+ |++++++++|+.|..+++     + ..|  +..+|..  +     .++.||+|+|+ +++.|+
T Consensus       141 l~~~~~~-G~~i~~~~~V~~i~~~~~-----~-~~v--~t~~g~~--~-----~a~~vV~a~G~-~~~~l~  194 (381)
T TIGR03197       141 LLAHAGI-RLTLHFNTEITSLERDGE-----G-WQL--LDANGEV--I-----AASVVVLANGA-QAGQLA  194 (381)
T ss_pred             HHhccCC-CcEEEeCCEEEEEEEcCC-----e-EEE--EeCCCCE--E-----EcCEEEEcCCc-cccccc
Confidence            4456677 999999999999987654     3 234  3346642  3     37999999998 565544

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>PRK07538 hypothetical protein; Provisional

Probab=97.06  E-value=0.00037  Score=73.52  Aligned_cols=32  Identities=38%  Similarity=0.585  Sum_probs=30.3

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      ||+|||+|++|+++|..|++ |++|+|+||.+.
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   34 (413)
T PRK07538          2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE   34 (413)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence            89999999999999999999 999999999753

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=97.05  E-value=0.0042  Score=63.77  Aligned_cols=88  Identities=15%  Similarity=0.100  Sum_probs=54.1

Q ss_pred             HHHHHHHHHcCCCCCCCCCcCCCCcceeeeeEECCCCccccHHH-hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEE
Q 008331          168 SAVRDGLLEAGVLPYNGFTFDHIYGTKVSGTIFDEDGHRHSAAD-LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHC  246 (570)
Q Consensus       168 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~-~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~G  246 (570)
                      ..+.+.+.+.|++...    + ..+     .++|......+... ++..+++.|++|+++++|+.|  +++     . ..
T Consensus        57 ~d~~~fF~~~Gi~~~~----e-~~g-----rvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~-----~-~~  118 (376)
T TIGR03862        57 VALQDWARGLGIETFV----G-SSG-----RVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGG-----T-LR  118 (376)
T ss_pred             HHHHHHHHHCCCceEE----C-CCC-----EECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCC-----c-EE
Confidence            5677888889984210    1 111     23333333333333 556778899999999999999  322     2 34


Q ss_pred             EEEEecCCceEEEEecCCCCceEEEcCCccccHHH
Q 008331          247 VTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQL  281 (570)
Q Consensus       247 V~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~L  281 (570)
                      |.+.  .+. ..+     .++.||||+|+...|.+
T Consensus       119 v~~~--~~~-~~~-----~a~~vIlAtGG~s~p~~  145 (376)
T TIGR03862       119 FETP--DGQ-STI-----EADAVVLALGGASWSQL  145 (376)
T ss_pred             EEEC--CCc-eEE-----ecCEEEEcCCCcccccc
Confidence            5543  222 123     47999999999877754

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=97.05  E-value=0.00052  Score=76.08  Aligned_cols=37  Identities=38%  Similarity=0.493  Sum_probs=33.2

Q ss_pred             CCCcccEEEECCCCchhHHHHhhhc--cCeEEEEccCCC
Q 008331           38 LISYYDYIIVGGGTSGCPLAATLSQ--NATVLLLEKGGS   74 (570)
Q Consensus        38 ~~~~~DvIIVGsG~aG~~~A~~La~--g~~VlvLE~G~~   74 (570)
                      +.+++||+|||+|++|+++|..|++  |.+|+||||-+.
T Consensus        29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~   67 (634)
T PRK08294         29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG   67 (634)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence            3458999999999999999999998  899999998753

>TIGR03452 mycothione_red mycothione reductase

Probab=97.02  E-value=0.00053  Score=73.07  Aligned_cols=32  Identities=28%  Similarity=0.566  Sum_probs=27.1

Q ss_pred             cccEEEECCCCchhHHHHhhhccCeEEEEccCC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQNATVLLLEKGG   73 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~g~~VlvLE~G~   73 (570)
                      +||+||||+|++|..+|.+++ |+||+|+|++.
T Consensus         2 ~yD~vvIG~G~~g~~aa~~~~-g~~V~lie~~~   33 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDPRFA-DKRIAIVEKGT   33 (452)
T ss_pred             CcCEEEECCCHHHHHHHHHHC-CCeEEEEeCCC
Confidence            599999999999988865432 99999999864

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=97.01  E-value=0.00044  Score=71.46  Aligned_cols=34  Identities=24%  Similarity=0.262  Sum_probs=31.2

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      -||+|||||.+|+.+|..||+ |++|.|+|+.+..
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~   37 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK   37 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence            489999999999999999999 9999999987643

>PRK07846 mycothione reductase; Reviewed

Probab=96.97  E-value=0.00062  Score=72.53  Aligned_cols=33  Identities=30%  Similarity=0.568  Sum_probs=28.3

Q ss_pred             cccEEEECCCCchhHHHHhhhccCeEEEEccCCC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQNATVLLLEKGGS   74 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~g~~VlvLE~G~~   74 (570)
                      +||+||||+|++|..+|.++ .|+||+|+|++..
T Consensus         1 ~yD~vVIG~G~~g~~aa~~~-~G~~V~lie~~~~   33 (451)
T PRK07846          1 HYDLIIIGTGSGNSILDERF-ADKRIAIVEKGTF   33 (451)
T ss_pred             CCCEEEECCCHHHHHHHHHH-CCCeEEEEeCCCC
Confidence            48999999999999888763 3999999998753

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=96.94  E-value=0.00062  Score=72.92  Aligned_cols=36  Identities=28%  Similarity=0.334  Sum_probs=32.4

Q ss_pred             ccEEEECCCCchhHHHHhhhc-----cCeEEEEccCCCCCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-----NATVLLLEKGGSPYE   77 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-----g~~VlvLE~G~~~~~   77 (570)
                      .||+|||||.+|+++|++|++     |.+|+|+|+.+..++
T Consensus         3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG   43 (462)
T TIGR00562         3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGG   43 (462)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcc
Confidence            589999999999999999997     589999999887654

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=96.90  E-value=0.00053  Score=70.02  Aligned_cols=37  Identities=30%  Similarity=0.392  Sum_probs=33.7

Q ss_pred             cccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYE   77 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~   77 (570)
                      .-+++|||+|.+|+.||..||+ |.+|.|+||.+..++
T Consensus       124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGG  161 (622)
T COG1148         124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGG  161 (622)
T ss_pred             ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccc
Confidence            3479999999999999999999 999999999987654

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=96.89  E-value=0.00084  Score=76.88  Aligned_cols=37  Identities=24%  Similarity=0.350  Sum_probs=33.5

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPY   76 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~   76 (570)
                      ..+||+|||||+||+++|+.|++ |++|+|+|+.+...
T Consensus       536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lG  573 (1012)
T TIGR03315       536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPG  573 (1012)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccC
Confidence            45899999999999999999999 99999999986543

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=96.87  E-value=0.00077  Score=78.60  Aligned_cols=65  Identities=18%  Similarity=0.093  Sum_probs=48.3

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHHhCC
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGV  287 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGi  287 (570)
                      ++...++.|+++++++.|+++.-+ +     ++.+|++...+|...++     .++.|+++.|..-...|+...|.
T Consensus       357 l~~~L~~~GV~i~~~~~v~~i~g~-~-----~v~~V~l~~~~g~~~~i-----~~D~V~va~G~~Pnt~L~~~lg~  421 (985)
T TIGR01372       357 ARAEARELGIEVLTGHVVAATEGG-K-----RVSGVAVARNGGAGQRL-----EADALAVSGGWTPVVHLFSQRGG  421 (985)
T ss_pred             HHHHHHHcCCEEEcCCeEEEEecC-C-----cEEEEEEEecCCceEEE-----ECCEEEEcCCcCchhHHHHhcCC
Confidence            344556789999999999998643 2     67788887434544555     47999999998888888777664

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=96.85  E-value=0.00075  Score=72.32  Aligned_cols=35  Identities=23%  Similarity=0.388  Sum_probs=31.3

Q ss_pred             cEEEECCCCchhHHHHhhhc-c------CeEEEEccCCCCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-N------ATVLLLEKGGSPYE   77 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g------~~VlvLE~G~~~~~   77 (570)
                      +|||||||.+|+++|++|++ |      .+|+|||+.+..++
T Consensus         3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GG   44 (463)
T PRK12416          3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGG   44 (463)
T ss_pred             eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccc
Confidence            59999999999999999997 4      68999999887654

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=96.85  E-value=0.0009  Score=73.51  Aligned_cols=35  Identities=26%  Similarity=0.358  Sum_probs=32.5

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      .+.++|+|||||++|+++|..|++ |.+|.|+||.+
T Consensus        79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~  114 (668)
T PLN02927         79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL  114 (668)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence            456899999999999999999999 99999999975

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=96.83  E-value=0.021  Score=59.34  Aligned_cols=62  Identities=18%  Similarity=0.219  Sum_probs=44.1

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHHhCCC
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVG  288 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGiG  288 (570)
                      +....++.|++++++++|+++..+++     . ..|+.  .+|+.  +     .++.||+|+|.-..+.++..+|+.
T Consensus       189 l~~~l~~~gV~i~~~~~v~~i~~~~~-----~-~~v~~--~~g~~--i-----~~D~vI~a~G~~p~~~l~~~~gl~  250 (377)
T PRK04965        189 LQHRLTEMGVHLLLKSQLQGLEKTDS-----G-IRATL--DSGRS--I-----EVDAVIAAAGLRPNTALARRAGLA  250 (377)
T ss_pred             HHHHHHhCCCEEEECCeEEEEEccCC-----E-EEEEE--cCCcE--E-----ECCEEEECcCCCcchHHHHHCCCC
Confidence            33455678999999999999986543     2 23444  35653  4     379999999987667787777763

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=96.82  E-value=0.00092  Score=65.11  Aligned_cols=34  Identities=29%  Similarity=0.572  Sum_probs=32.1

Q ss_pred             cccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      +|||+|||+|.||+++|.+|++ |+++.++-+|-.
T Consensus         2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQs   36 (421)
T COG3075           2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQS   36 (421)
T ss_pred             cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCChh
Confidence            6999999999999999999999 999999999863

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=96.79  E-value=0.0011  Score=64.56  Aligned_cols=35  Identities=31%  Similarity=0.435  Sum_probs=32.1

Q ss_pred             CCCCcccEEEECCCCchhHHHHhhhc-cCeEEEEcc
Q 008331           37 PLISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEK   71 (570)
Q Consensus        37 ~~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~   71 (570)
                      ....+||.||||+|.+|+++|.++|. |.+|.+|+-
T Consensus        15 ~~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDf   50 (503)
T KOG4716|consen   15 FSSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDF   50 (503)
T ss_pred             cccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEee
Confidence            34668999999999999999999999 999999984

>PRK12831 putative oxidoreductase; Provisional

Probab=96.77  E-value=0.0012  Score=70.43  Aligned_cols=37  Identities=22%  Similarity=0.317  Sum_probs=33.3

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      ....||+|||+|++|+.+|..|++ |++|+|+|+....
T Consensus       138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~  175 (464)
T PRK12831        138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEP  175 (464)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence            456899999999999999999999 9999999987643

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=96.75  E-value=0.043  Score=49.18  Aligned_cols=30  Identities=23%  Similarity=0.442  Sum_probs=25.3

Q ss_pred             EEECCCCchhHHHHhhhc-c-----CeEEEEccCCC
Q 008331           45 IIVGGGTSGCPLAATLSQ-N-----ATVLLLEKGGS   74 (570)
Q Consensus        45 IIVGsG~aG~~~A~~La~-g-----~~VlvLE~G~~   74 (570)
                      .|||+|++|++++.+|.+ .     .+|.|+|+.+.
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~   36 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF   36 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence            489999999999999976 3     58999998543

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=96.70  E-value=0.0017  Score=64.47  Aligned_cols=37  Identities=30%  Similarity=0.474  Sum_probs=33.5

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPY   76 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~   76 (570)
                      .+||+||||+|++|-++|.++++ |++...+|+.....
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LG   75 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLG   75 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccC
Confidence            58999999999999999999999 99999999955443

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=96.69  E-value=0.0014  Score=70.09  Aligned_cols=33  Identities=27%  Similarity=0.514  Sum_probs=30.6

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      ++||||+|+||.++|.+|++ |++|+|+||+...
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~G   35 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADLG   35 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCccc
Confidence            68999999999999999999 9999999998643

>PRK06475 salicylate hydroxylase; Provisional

Probab=96.67  E-value=0.0012  Score=69.20  Aligned_cols=32  Identities=28%  Similarity=0.428  Sum_probs=30.0

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      +|+|||||++|+++|..|++ |.+|.|+||.+.
T Consensus         4 ~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~   36 (400)
T PRK06475          4 SPLIAGAGVAGLSAALELAARGWAVTIIEKAQE   36 (400)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence            69999999999999999999 999999999753

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=96.65  E-value=0.0013  Score=68.44  Aligned_cols=33  Identities=30%  Similarity=0.426  Sum_probs=30.5

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      .||+|||+|.+|+.+|..||+ |.+|+|+|+.+.
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~   34 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE   34 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence            379999999999999999999 999999998764

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PLN02529 lysine-specific histone demethylase 1

Probab=96.65  E-value=0.0016  Score=72.52  Aligned_cols=39  Identities=31%  Similarity=0.313  Sum_probs=34.9

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYE   77 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~   77 (570)
                      ....||+|||+|++|+++|..|++ |++|+|||+.+..++
T Consensus       158 ~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG  197 (738)
T PLN02529        158 GTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGG  197 (738)
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcC
Confidence            456899999999999999999999 999999999876554

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=96.63  E-value=0.0015  Score=65.98  Aligned_cols=33  Identities=33%  Similarity=0.466  Sum_probs=30.2

Q ss_pred             cccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      +-+|||||||.+|++.|..|.+ |.+|+|+|+-.
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e   35 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESRE   35 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecc
Confidence            3479999999999999999999 99999999843

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=96.63  E-value=0.0017  Score=72.65  Aligned_cols=39  Identities=26%  Similarity=0.360  Sum_probs=34.9

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYE   77 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~   77 (570)
                      ....+|+|||+|.+|+++|+.|++ |.+|+|+|+....++
T Consensus       236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GG  275 (808)
T PLN02328        236 VEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGG  275 (808)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCC
Confidence            446899999999999999999999 999999999876653

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=96.59  E-value=0.002  Score=69.05  Aligned_cols=38  Identities=21%  Similarity=0.278  Sum_probs=33.9

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPY   76 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~   76 (570)
                      ....+|+|||+|++|+.+|..|++ |++|+|+|+.+...
T Consensus       141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~G  179 (471)
T PRK12810        141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIG  179 (471)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence            345799999999999999999999 99999999987653

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=96.58  E-value=0.0017  Score=67.73  Aligned_cols=34  Identities=29%  Similarity=0.403  Sum_probs=31.4

Q ss_pred             EEEECCCCchhHHHHhhhc-c--CeEEEEccCCCCCC
Q 008331           44 YIIVGGGTSGCPLAATLSQ-N--ATVLLLEKGGSPYE   77 (570)
Q Consensus        44 vIIVGsG~aG~~~A~~La~-g--~~VlvLE~G~~~~~   77 (570)
                      ++|||||.+|+++|++|.+ +  ..|.|+|++++.++
T Consensus         3 i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG   39 (444)
T COG1232           3 IAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGG   39 (444)
T ss_pred             EEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCc
Confidence            7999999999999999999 7  89999999987664

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=96.56  E-value=0.0016  Score=67.98  Aligned_cols=42  Identities=31%  Similarity=0.352  Sum_probs=32.4

Q ss_pred             CCCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCCCC
Q 008331           38 LISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYENP   79 (570)
Q Consensus        38 ~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~~~   79 (570)
                      ++++|||||+|.|..-+++|..|+. |.|||.||+.+++++..
T Consensus         1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~   43 (438)
T PF00996_consen    1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEW   43 (438)
T ss_dssp             --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG
T ss_pred             CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCch
Confidence            3678999999999999999999999 99999999999987643

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>PLN02612 phytoene desaturase

Probab=96.52  E-value=0.0023  Score=70.14  Aligned_cols=38  Identities=24%  Similarity=0.267  Sum_probs=34.0

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYE   77 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~   77 (570)
                      ...+|+|||+|.+|+++|++|++ |.+|+|+|+.....+
T Consensus        92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG  130 (567)
T PLN02612         92 KPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGG  130 (567)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCC
Confidence            46799999999999999999999 999999999876543

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=96.49  E-value=0.0024  Score=67.97  Aligned_cols=37  Identities=22%  Similarity=0.371  Sum_probs=33.3

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      ...+||+|||+|++|+.+|..|++ |++|+|+|+.+..
T Consensus       131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~  168 (449)
T TIGR01316       131 STHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKP  168 (449)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            346899999999999999999999 9999999997644

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=96.47  E-value=0.0028  Score=49.72  Aligned_cols=32  Identities=31%  Similarity=0.583  Sum_probs=30.1

Q ss_pred             EEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           44 YIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        44 vIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      ++|||+|..|+-+|..|++ |.+|.|+|+.+..
T Consensus         2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~   34 (80)
T PF00070_consen    2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRL   34 (80)
T ss_dssp             EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence            7999999999999999999 9999999999754

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=96.45  E-value=0.0022  Score=68.73  Aligned_cols=65  Identities=18%  Similarity=0.285  Sum_probs=43.6

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHH
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLL  282 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LL  282 (570)
                      +.+..++.|.+|+++++|++|..++++++..++++|.+.+.++. ..+     .++.||+|+..-.+.+||
T Consensus       225 l~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~-~~~-----~aD~VVlA~p~~~~~~Ll  289 (474)
T TIGR02732       225 ILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGK-KVI-----KADAYVAACDVPGIKRLL  289 (474)
T ss_pred             HHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcc-eEE-----ECCEEEECCChHHHHhhC
Confidence            34445568999999999999998752101113788888532221 224     379999999987776665

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=96.37  E-value=0.0031  Score=64.72  Aligned_cols=37  Identities=27%  Similarity=0.372  Sum_probs=32.7

Q ss_pred             cccEEEECCCCchhHHHHhhhc-c-CeEEEEccCCCCCC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ-N-ATVLLLEKGGSPYE   77 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~-g-~~VlvLE~G~~~~~   77 (570)
                      +.-+||||||+||++||.+|-+ | .+|+|+|+.++.++
T Consensus        21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGG   59 (498)
T KOG0685|consen   21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGG   59 (498)
T ss_pred             CceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCc
Confidence            4469999999999999999998 5 78999999987764

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=96.34  E-value=0.0027  Score=67.02  Aligned_cols=32  Identities=34%  Similarity=0.569  Sum_probs=29.3

Q ss_pred             cEEEECCCCchhHHHHhhhc-c-CeEEEEccCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-N-ATVLLLEKGGS   74 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g-~~VlvLE~G~~   74 (570)
                      .|+|||+|++|+++|..|++ | .+|.|+||.+.
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~   35 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPA   35 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCc
Confidence            58999999999999999999 7 69999999754

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=96.34  E-value=0.0035  Score=66.97  Aligned_cols=37  Identities=19%  Similarity=0.297  Sum_probs=33.5

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      ....+|+|||+|++|+.+|..|++ |++|+|+|+.+..
T Consensus       138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~  175 (457)
T PRK11749        138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKA  175 (457)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCC
Confidence            346799999999999999999999 9999999998754

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.31  E-value=0.0033  Score=70.32  Aligned_cols=37  Identities=22%  Similarity=0.278  Sum_probs=33.2

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPY   76 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~   76 (570)
                      ...+|+|||||++|+++|..|++ |++|+|+|+.+...
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~G  363 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIG  363 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence            45699999999999999999999 99999999986543

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=96.30  E-value=0.0029  Score=73.02  Aligned_cols=38  Identities=24%  Similarity=0.091  Sum_probs=33.7

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYE   77 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~   77 (570)
                      ...+|+|||||+||+++|..|++ |++|+|+|+.+...+
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG  343 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGG  343 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCc
Confidence            35789999999999999999999 999999999875443

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=96.27  E-value=0.0037  Score=71.44  Aligned_cols=37  Identities=22%  Similarity=0.310  Sum_probs=33.3

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPY   76 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~   76 (570)
                      ...+|+|||||+||+++|+.|++ |++|+|+|+.+...
T Consensus       538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~G  575 (1019)
T PRK09853        538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAG  575 (1019)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccC
Confidence            45689999999999999999999 99999999987544

>PLN02852 ferredoxin-NADP+ reductase

Probab=96.26  E-value=0.0047  Score=65.81  Aligned_cols=38  Identities=26%  Similarity=0.386  Sum_probs=33.2

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc---cCeEEEEccCCCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ---NATVLLLEKGGSPY   76 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~---g~~VlvLE~G~~~~   76 (570)
                      .....|+|||||+||+.+|..|++   |.+|.|+|+-+...
T Consensus        24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pg   64 (491)
T PLN02852         24 SEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPF   64 (491)
T ss_pred             CCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCc
Confidence            345689999999999999999984   89999999998654

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=96.26  E-value=0.0033  Score=73.14  Aligned_cols=37  Identities=24%  Similarity=0.200  Sum_probs=33.4

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPY   76 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~   76 (570)
                      ...+|+|||||+||+++|..|++ |++|+|+|+.+...
T Consensus       429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~G  466 (1006)
T PRK12775        429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVG  466 (1006)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCc
Confidence            35799999999999999999999 99999999987554

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=96.22  E-value=0.0041  Score=70.68  Aligned_cols=35  Identities=20%  Similarity=0.317  Sum_probs=32.0

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      ...||+|||||+||+++|..|++ |++|+|+|+.+.
T Consensus       430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~  465 (752)
T PRK12778        430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHE  465 (752)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            46799999999999999999999 999999998654

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=96.19  E-value=0.0044  Score=62.42  Aligned_cols=37  Identities=49%  Similarity=0.749  Sum_probs=32.1

Q ss_pred             CCCcccEEEECCCCchhHHHHhhhc-----cCeEEEEccCCC
Q 008331           38 LISYYDYIIVGGGTSGCPLAATLSQ-----NATVLLLEKGGS   74 (570)
Q Consensus        38 ~~~~~DvIIVGsG~aG~~~A~~La~-----g~~VlvLE~G~~   74 (570)
                      ..+.|||||||+|+.|.++|..|..     .+||++||.+..
T Consensus        33 ~~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s   74 (481)
T KOG3855|consen   33 DTAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDS   74 (481)
T ss_pred             CcccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccC
Confidence            3458999999999999999999976     479999999954

>PLN02487 zeta-carotene desaturase

Probab=96.18  E-value=0.0052  Score=66.85  Aligned_cols=65  Identities=11%  Similarity=0.136  Sum_probs=44.4

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHH
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLL  282 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LL  282 (570)
                      +.+..++.|.+|++++.|++|..+.++++..+++||++.. ++....+     .++.||+|++.....+||
T Consensus       301 l~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~-~~~~~~~-----~aD~VV~A~p~~~~~~Ll  365 (569)
T PLN02487        301 IAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSK-ATEKEIV-----KADAYVAACDVPGIKRLL  365 (569)
T ss_pred             HHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEec-CCCceEE-----ECCEEEECCCHHHHHHhC
Confidence            3345667899999999999999985321112589998852 3332334     369999999976555544

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=96.16  E-value=0.076  Score=60.85  Aligned_cols=62  Identities=15%  Similarity=0.113  Sum_probs=45.4

Q ss_pred             hhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHHhCC
Q 008331          213 LEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGV  287 (570)
Q Consensus       213 l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGi  287 (570)
                      ....++.|+++++++.|++|..++.+    .+..|.+.  +|+.  +     .++.||+|+|.--...|+..+|+
T Consensus       194 ~~~L~~~GV~v~~~~~v~~I~~~~~~----~~~~v~~~--dG~~--i-----~~D~Vv~A~G~rPn~~L~~~~Gl  255 (847)
T PRK14989        194 RRKIESMGVRVHTSKNTLEIVQEGVE----ARKTMRFA--DGSE--L-----EVDFIVFSTGIRPQDKLATQCGL  255 (847)
T ss_pred             HHHHHHCCCEEEcCCeEEEEEecCCC----ceEEEEEC--CCCE--E-----EcCEEEECCCcccCchHHhhcCc
Confidence            34556789999999999999765432    45556654  6653  4     47999999998777777767775

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=96.12  E-value=0.044  Score=62.53  Aligned_cols=60  Identities=22%  Similarity=0.249  Sum_probs=44.0

Q ss_pred             hhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHHhCC
Q 008331          213 LEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGV  287 (570)
Q Consensus       213 l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGi  287 (570)
                      ....++.|+++++++.|++|..+ +     ++.+|.+.  +|+.  +     .++.||+|+|.--.+.|+..+|+
T Consensus       189 ~~~l~~~GV~v~~~~~v~~i~~~-~-----~~~~v~~~--dG~~--i-----~~D~Vi~a~G~~Pn~~la~~~gl  248 (785)
T TIGR02374       189 QRELEQKGLTFLLEKDTVEIVGA-T-----KADRIRFK--DGSS--L-----EADLIVMAAGIRPNDELAVSAGI  248 (785)
T ss_pred             HHHHHHcCCEEEeCCceEEEEcC-C-----ceEEEEEC--CCCE--E-----EcCEEEECCCCCcCcHHHHhcCC
Confidence            34556789999999999998643 2     56677775  5653  3     37999999997666666666665

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=96.00  E-value=0.0069  Score=62.34  Aligned_cols=46  Identities=22%  Similarity=0.278  Sum_probs=36.4

Q ss_pred             eeeecccCCCCCCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           28 TFVKDATSAPLISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        28 ~~~~~~~~~~~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      .|+++....  ....+|+|||+|++|+.+|..|++ |.+|.|+|+.+..
T Consensus         7 ~~~~~~~~~--~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~   53 (352)
T PRK12770          7 AFMCKEKPP--PTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEP   53 (352)
T ss_pred             hhhcccCCC--CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            455543332  234589999999999999999999 9999999998754

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=95.98  E-value=0.035  Score=59.45  Aligned_cols=32  Identities=25%  Similarity=0.474  Sum_probs=28.9

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      -+++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~  203 (461)
T TIGR01350       171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLD  203 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC
Confidence            479999999999999999999 99999999875

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=95.97  E-value=0.0069  Score=67.55  Aligned_cols=37  Identities=22%  Similarity=0.248  Sum_probs=33.3

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPY   76 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~   76 (570)
                      ...+|+|||+|++|+.+|..|++ |++|+|+|+.+...
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~G  229 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAG  229 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence            45799999999999999999999 99999999987643

>PLN03000 amine oxidase

Probab=95.95  E-value=0.0061  Score=68.53  Aligned_cols=38  Identities=34%  Similarity=0.369  Sum_probs=34.6

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYE   77 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~   77 (570)
                      ...||+|||+|.+|+.+|..|++ |++|+|+|+.+...+
T Consensus       183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGG  221 (881)
T PLN03000        183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGG  221 (881)
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCC
Confidence            45799999999999999999999 999999999887654

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=95.92  E-value=0.0068  Score=61.99  Aligned_cols=34  Identities=41%  Similarity=0.781  Sum_probs=31.0

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKG   72 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G   72 (570)
                      +..|||||||+|-|||-+|..+|+ |.+.++|-..
T Consensus        26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~   60 (679)
T KOG2311|consen   26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN   60 (679)
T ss_pred             CCcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence            678999999999999999999999 9999998644

>PLN02976 amine oxidase

Probab=95.90  E-value=0.0071  Score=70.61  Aligned_cols=39  Identities=26%  Similarity=0.331  Sum_probs=34.4

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYE   77 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~   77 (570)
                      ...+|++|||+|++|+.+|+.|++ |.+|+|||+.+...+
T Consensus       691 ~~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGG  730 (1713)
T PLN02976        691 VDRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGG  730 (1713)
T ss_pred             CCCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCC
Confidence            345899999999999999999999 999999999766543

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=95.79  E-value=0.0086  Score=64.08  Aligned_cols=36  Identities=17%  Similarity=0.333  Sum_probs=32.8

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      ...+|+|||+|++|+.+|..|++ |.+|+|+|+.+..
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~  176 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEI  176 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence            45799999999999999999999 9999999998754

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=95.63  E-value=0.068  Score=57.30  Aligned_cols=53  Identities=11%  Similarity=0.129  Sum_probs=35.4

Q ss_pred             CCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHH
Q 008331          217 DPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQ  280 (570)
Q Consensus       217 ~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~  280 (570)
                      ++.|++|+++++|+++..+++     .+ .|.+.+.+|+..++     .++.||+|+|..-...
T Consensus       224 ~~~gV~i~~~~~v~~i~~~~~-----~~-~v~~~~~~g~~~~i-----~~D~vi~a~G~~pn~~  276 (466)
T PRK07818        224 KKLGVKILTGTKVESIDDNGS-----KV-TVTVSKKDGKAQEL-----EADKVLQAIGFAPRVE  276 (466)
T ss_pred             HHCCCEEEECCEEEEEEEeCC-----eE-EEEEEecCCCeEEE-----EeCEEEECcCcccCCC
Confidence            346899999999999975433     22 34444235654455     3799999999654443

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=95.59  E-value=0.012  Score=63.37  Aligned_cols=35  Identities=26%  Similarity=0.352  Sum_probs=32.2

Q ss_pred             cccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      ..+|+|||+|++|+.+|..|++ |++|+|+|+.+..
T Consensus       143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~  178 (485)
T TIGR01317       143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRC  178 (485)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence            4699999999999999999999 9999999998753

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=95.59  E-value=0.0084  Score=68.20  Aligned_cols=32  Identities=22%  Similarity=0.427  Sum_probs=29.5

Q ss_pred             cEEEECCCCchhHHHHhhhc---cCeEEEEccCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ---NATVLLLEKGGS   74 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~---g~~VlvLE~G~~   74 (570)
                      +|+|||+|++|+++|..|++   |++|+|+||.+.
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~   36 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP   36 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence            69999999999999999998   589999999874

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=95.49  E-value=0.011  Score=66.96  Aligned_cols=35  Identities=20%  Similarity=0.325  Sum_probs=31.6

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      ....|+|||+|+||+.+|+.|++ |++|.|+|+...
T Consensus       382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i  417 (1028)
T PRK06567        382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKI  417 (1028)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccc
Confidence            45689999999999999999999 999999998643

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=95.43  E-value=0.013  Score=65.36  Aligned_cols=37  Identities=16%  Similarity=0.224  Sum_probs=33.5

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPY   76 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~   76 (570)
                      ...+|+|||+|++|+++|..|++ |++|+|+|+.+...
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~G  346 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIG  346 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCC
Confidence            35689999999999999999999 99999999998654

>PTZ00188 adrenodoxin reductase; Provisional

Probab=95.37  E-value=0.014  Score=61.53  Aligned_cols=37  Identities=27%  Similarity=0.346  Sum_probs=32.0

Q ss_pred             cccEEEECCCCchhHHHHhhh-c-cCeEEEEccCCCCCC
Q 008331           41 YYDYIIVGGGTSGCPLAATLS-Q-NATVLLLEKGGSPYE   77 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La-~-g~~VlvLE~G~~~~~   77 (570)
                      ..-|.|||||+||+.+|.+|+ + |.+|.|+||-+.+.+
T Consensus        39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgG   77 (506)
T PTZ00188         39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYG   77 (506)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCcc
Confidence            446999999999999999875 5 999999999987654

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=95.36  E-value=0.08  Score=56.91  Aligned_cols=52  Identities=19%  Similarity=0.293  Sum_probs=36.4

Q ss_pred             CCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHH
Q 008331          218 PEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQ  280 (570)
Q Consensus       218 ~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~  280 (570)
                      +.|++++++++|++|..+++     .+ .|++.+.+|+...+     .++.||+|.|..-...
T Consensus       236 ~~gi~i~~~~~v~~i~~~~~-----~v-~v~~~~~~g~~~~i-----~~D~vl~a~G~~p~~~  287 (475)
T PRK06327        236 KQGLDIHLGVKIGEIKTGGK-----GV-SVAYTDADGEAQTL-----EVDKLIVSIGRVPNTD  287 (475)
T ss_pred             HcCcEEEeCcEEEEEEEcCC-----EE-EEEEEeCCCceeEE-----EcCEEEEccCCccCCC
Confidence            46899999999999976544     33 35555444654455     4799999999754444

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=95.31  E-value=0.12  Score=55.60  Aligned_cols=31  Identities=32%  Similarity=0.557  Sum_probs=27.2

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      .++|||+|.+|+-+|..|++ |.+|.|+|+++
T Consensus       182 ~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~  213 (472)
T PRK05976        182 SLVIVGGGVIGLEWASMLADFGVEVTVVEAAD  213 (472)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCeEEEEEecC
Confidence            68999999999999999988 88999998775

>PRK12831 putative oxidoreductase; Provisional

Probab=95.23  E-value=0.12  Score=55.41  Aligned_cols=30  Identities=27%  Similarity=0.361  Sum_probs=27.8

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKG   72 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G   72 (570)
                      .|+|||+|..|+-+|..|++ |.+|.|+++.
T Consensus       283 ~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~  313 (464)
T PRK12831        283 KVAVVGGGNVAMDAARTALRLGAEVHIVYRR  313 (464)
T ss_pred             eEEEECCcHHHHHHHHHHHHcCCEEEEEeec
Confidence            69999999999999999999 9999999865

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=95.19  E-value=0.016  Score=63.73  Aligned_cols=37  Identities=24%  Similarity=0.353  Sum_probs=32.7

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPY   76 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~   76 (570)
                      ..-+|+|||+|++|+.+|..|++ |++|+|+|+.+...
T Consensus       136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~G  173 (564)
T PRK12771        136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLG  173 (564)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence            34589999999999999999999 99999999976543

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.13  E-value=0.11  Score=54.00  Aligned_cols=33  Identities=30%  Similarity=0.515  Sum_probs=27.9

Q ss_pred             ccEEEECCCCchhHHHHhhhc----cCeEEEEccCCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ----NATVLLLEKGGS   74 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~----g~~VlvLE~G~~   74 (570)
                      ++|.|||+|++|..+|..|.+    ..+|.|+|+-+.
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~   38 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPN   38 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccc
Confidence            689999999999999999987    234999997654

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=95.08  E-value=0.17  Score=53.87  Aligned_cols=31  Identities=26%  Similarity=0.381  Sum_probs=28.6

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      .|+|||+|..|+-+|..|++ |.+|.|+++..
T Consensus       274 ~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~  305 (449)
T TIGR01316       274 SVVVIGGGNTAVDSARTALRLGAEVHCLYRRT  305 (449)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence            69999999999999999999 99999998763

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=94.96  E-value=0.3  Score=53.12  Aligned_cols=57  Identities=14%  Similarity=0.227  Sum_probs=44.1

Q ss_pred             CCeEEEecceEEEEEecCCCCCCCeEEEEEEEec-CCceEEEEecCCCCceEEEcCCccccHHHHHHh
Q 008331          219 EKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDH-VGARHRACLNNGGKNEIILSAGAIGSPQLLMLS  285 (570)
Q Consensus       219 ~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~-~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~S  285 (570)
                      .|+++++++.|+++..+++     ++++|++.+. +|+..++     .++.|++|.|..-.+.+|..+
T Consensus       400 ~gI~i~~~~~v~~i~~~~g-----~v~~v~~~~~~~g~~~~i-----~~D~v~~~~G~~p~~~~l~~~  457 (517)
T PRK15317        400 PNVTIITNAQTTEVTGDGD-----KVTGLTYKDRTTGEEHHL-----ELEGVFVQIGLVPNTEWLKGT  457 (517)
T ss_pred             CCcEEEECcEEEEEEcCCC-----cEEEEEEEECCCCcEEEE-----EcCEEEEeECCccCchHHhhh
Confidence            5899999999999986544     8889998864 3555556     479999999987767776543

>PRK13984 putative oxidoreductase; Provisional

Probab=94.92  E-value=0.027  Score=62.55  Aligned_cols=38  Identities=26%  Similarity=0.248  Sum_probs=33.8

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPY   76 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~   76 (570)
                      ....+++|||+|++|+.+|..|++ |.+|+|+|+.+...
T Consensus       281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~g  319 (604)
T PRK13984        281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPG  319 (604)
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence            346789999999999999999999 99999999987543

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=94.78  E-value=0.18  Score=53.65  Aligned_cols=32  Identities=16%  Similarity=0.311  Sum_probs=29.1

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      -.++|||+|..|+-+|..|++ |.+|.++|+++
T Consensus       150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~  182 (444)
T PRK09564        150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLED  182 (444)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCc
Confidence            369999999999999999999 99999998764

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=94.70  E-value=0.038  Score=56.13  Aligned_cols=39  Identities=31%  Similarity=0.333  Sum_probs=32.5

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-c--CeEEEEccCCCCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-N--ATVLLLEKGGSPYE   77 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g--~~VlvLE~G~~~~~   77 (570)
                      ....+++|||+|.+|+++|+.|++ +  ..|.|.|++++..+
T Consensus         9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGG   50 (491)
T KOG1276|consen    9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGG   50 (491)
T ss_pred             eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccc
Confidence            345689999999999999999999 5  45677999987654

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=94.67  E-value=0.42  Score=51.91  Aligned_cols=55  Identities=11%  Similarity=0.207  Sum_probs=41.6

Q ss_pred             CCeEEEecceEEEEEecCCCCCCCeEEEEEEEec-CCceEEEEecCCCCceEEEcCCccccHHHHH
Q 008331          219 EKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDH-VGARHRACLNNGGKNEIILSAGAIGSPQLLM  283 (570)
Q Consensus       219 ~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~-~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl  283 (570)
                      .|+++++++.|+++.-+++     ++++|++.+. +|+...+     .++.||+|.|..-.+.+|.
T Consensus       401 ~gV~i~~~~~v~~i~~~~~-----~v~~v~~~~~~~~~~~~i-----~~D~vi~a~G~~Pn~~~l~  456 (515)
T TIGR03140       401 PNVDILTSAQTTEIVGDGD-----KVTGIRYQDRNSGEEKQL-----DLDGVFVQIGLVPNTEWLK  456 (515)
T ss_pred             CCCEEEECCeeEEEEcCCC-----EEEEEEEEECCCCcEEEE-----EcCEEEEEeCCcCCchHHh
Confidence            5899999999999976544     7888988753 3444455     4799999999776666664

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=94.42  E-value=0.032  Score=59.39  Aligned_cols=59  Identities=15%  Similarity=0.144  Sum_probs=41.6

Q ss_pred             hhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHHhCC
Q 008331          213 LEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGV  287 (570)
Q Consensus       213 l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGi  287 (570)
                      ...+++.|++++++++|++|.. ++     ++..+..   ++..  +     .++.||+|+|..-...+|..+|+
T Consensus       198 ~~~l~~~gI~v~~~~~v~~i~~-~~-----~~~~v~~---~~~~--i-----~~d~vi~a~G~~p~~~~l~~~gl  256 (444)
T PRK09564        198 EEELRENGVELHLNEFVKSLIG-ED-----KVEGVVT---DKGE--Y-----EADVVIVATGVKPNTEFLEDTGL  256 (444)
T ss_pred             HHHHHHCCCEEEcCCEEEEEec-CC-----cEEEEEe---CCCE--E-----EcCEEEECcCCCcCHHHHHhcCc
Confidence            3456678999999999999953 22     4555543   2322  4     36899999998766778877776

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=94.37  E-value=0.034  Score=59.09  Aligned_cols=33  Identities=21%  Similarity=0.457  Sum_probs=29.6

Q ss_pred             cEEEECCCCchhHHHHhhhc---cCeEEEEccCCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ---NATVLLLEKGGSP   75 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~---g~~VlvLE~G~~~   75 (570)
                      .|||||+|+||+.+|.+|++   +.+|+|+|+.+..
T Consensus         3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~   38 (438)
T PRK13512          3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDM   38 (438)
T ss_pred             eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCc
Confidence            59999999999999999987   4789999999754

>PRK10262 thioredoxin reductase; Provisional

Probab=94.16  E-value=0.65  Score=46.99  Aligned_cols=60  Identities=5%  Similarity=0.080  Sum_probs=41.6

Q ss_pred             CCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecC--CceEEEEecCCCCceEEEcCCccccHHHHHHhCC
Q 008331          217 DPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHV--GARHRACLNNGGKNEIILSAGAIGSPQLLMLSGV  287 (570)
Q Consensus       217 ~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~--G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGi  287 (570)
                      ++.|+++++++.|+++.-+++     ++.+|++.+..  +...++     .++.||+|.|.--...|+ .+++
T Consensus       196 ~~~gV~i~~~~~v~~v~~~~~-----~~~~v~~~~~~~~~~~~~i-----~~D~vv~a~G~~p~~~l~-~~~l  257 (321)
T PRK10262        196 ENGNIILHTNRTLEEVTGDQM-----GVTGVRLRDTQNSDNIESL-----DVAGLFVAIGHSPNTAIF-EGQL  257 (321)
T ss_pred             cCCCeEEEeCCEEEEEEcCCc-----cEEEEEEEEcCCCCeEEEE-----ECCEEEEEeCCccChhHh-hccc
Confidence            456899999999999976544     67788887432  333445     479999999975555543 3344

>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.15  E-value=0.053  Score=54.61  Aligned_cols=41  Identities=27%  Similarity=0.297  Sum_probs=37.4

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYENP   79 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~~~   79 (570)
                      .++||+||||.|.-=+++|...++ |.+||=|++..+++++.
T Consensus         6 P~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~w   47 (547)
T KOG4405|consen    6 PEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNW   47 (547)
T ss_pred             chhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcc
Confidence            568999999999999999999999 99999999999887643

>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=94.08  E-value=0.035  Score=55.94  Aligned_cols=42  Identities=26%  Similarity=0.404  Sum_probs=37.8

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCCCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYENPN   80 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~~~~   80 (570)
                      +++|||||+|.|.-=|+++..|+. |.+||.++|.+.+++...
T Consensus         2 deeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sa   44 (440)
T KOG1439|consen    2 DEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESA   44 (440)
T ss_pred             CCceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCcccc
Confidence            567999999999999999999999 999999999998876443

>KOG2403 consensus Succinate dehydrogenase, flavoprotein subunit [Energy production and conversion]

Probab=93.95  E-value=0.1  Score=54.66  Aligned_cols=33  Identities=27%  Similarity=0.452  Sum_probs=30.0

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKG   72 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G   72 (570)
                      ..||.+|||+|.||+-+|..|+| |.++.++-+-
T Consensus        54 ~~~da~vvgaggAGlr~~~~lae~g~~~a~itkl   87 (642)
T KOG2403|consen   54 HTYDAVVVGAGGAGLRAARGLAELGEKTAVITKL   87 (642)
T ss_pred             eeceeEEEeccchhhhhhhhhhhcCceEEEEecc
Confidence            35999999999999999999999 9999998764

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=93.93  E-value=0.06  Score=56.96  Aligned_cols=37  Identities=11%  Similarity=0.260  Sum_probs=32.4

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      ....+|||||+|.||+.+|.+|.. +.+|+|+|+.+..
T Consensus         8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~   45 (424)
T PTZ00318          8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHM   45 (424)
T ss_pred             CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCc
Confidence            345689999999999999999987 8999999988754

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=93.62  E-value=0.076  Score=53.18  Aligned_cols=35  Identities=37%  Similarity=0.460  Sum_probs=30.7

Q ss_pred             cEEEECCCCchhHHHHhhhc---cCeEEEEccCCCCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ---NATVLLLEKGGSPYE   77 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~---g~~VlvLE~G~~~~~   77 (570)
                      -|+|||||+||..+|..|-+   +.+|-|.|+-+.+.+
T Consensus        22 ~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFG   59 (468)
T KOG1800|consen   22 RVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFG   59 (468)
T ss_pred             eEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccc
Confidence            69999999999999988876   699999999986543

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=93.53  E-value=0.52  Score=47.99  Aligned_cols=38  Identities=29%  Similarity=0.315  Sum_probs=33.8

Q ss_pred             CCCcccEEEECCCCchhHHHHhhhc--cCeEEEEccCCCC
Q 008331           38 LISYYDYIIVGGGTSGCPLAATLSQ--NATVLLLEKGGSP   75 (570)
Q Consensus        38 ~~~~~DvIIVGsG~aG~~~A~~La~--g~~VlvLE~G~~~   75 (570)
                      +.+.+|+|.||-|+.-+.+|..|.+  +.+++.|||-+..
T Consensus         2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F   41 (436)
T COG3486           2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF   41 (436)
T ss_pred             CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC
Confidence            3567999999999999999999999  5899999998753

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=93.40  E-value=0.091  Score=52.43  Aligned_cols=40  Identities=33%  Similarity=0.409  Sum_probs=36.5

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCCCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYENP   79 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~~~   79 (570)
                      ..|||||+|.|.-=|+++.+|+- |.+||.+++.+.+++..
T Consensus         5 ~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~   45 (434)
T COG5044           5 TLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTS   45 (434)
T ss_pred             ccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccc
Confidence            47999999999999999999998 99999999999887643

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=92.74  E-value=0.15  Score=49.90  Aligned_cols=38  Identities=24%  Similarity=0.449  Sum_probs=32.1

Q ss_pred             CCCcccEEEECCCCchhHHHHhhhc--c-CeEEEEccCCCC
Q 008331           38 LISYYDYIIVGGGTSGCPLAATLSQ--N-ATVLLLEKGGSP   75 (570)
Q Consensus        38 ~~~~~DvIIVGsG~aG~~~A~~La~--g-~~VlvLE~G~~~   75 (570)
                      ....|.|+|||+|.+|+.+|.++.+  + -+|.|+|-....
T Consensus        36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~H   76 (446)
T KOG3851|consen   36 ARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDH   76 (446)
T ss_pred             cccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhc
Confidence            3568999999999999999999998  5 689999966543

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=92.69  E-value=0.16  Score=49.92  Aligned_cols=32  Identities=22%  Similarity=0.357  Sum_probs=29.3

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      -|.|||+|.||+-+|+.+|+ |.+|.+.|--+.
T Consensus         5 ~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~   37 (439)
T COG1206           5 PINVIGAGLAGSEAAWQIAKRGVPVILYEMRPV   37 (439)
T ss_pred             ceEEEcccccccHHHHHHHHcCCcEEEEEcccc
Confidence            48899999999999999999 999999997654

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=92.65  E-value=0.12  Score=53.46  Aligned_cols=32  Identities=16%  Similarity=0.396  Sum_probs=28.5

Q ss_pred             EEEECCCCchhHHHHhhhc----cCeEEEEccCCCC
Q 008331           44 YIIVGGGTSGCPLAATLSQ----NATVLLLEKGGSP   75 (570)
Q Consensus        44 vIIVGsG~aG~~~A~~La~----g~~VlvLE~G~~~   75 (570)
                      |||||+|+||+.+|.+|.+    +.+|+|+|+.+..
T Consensus         2 vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~   37 (364)
T TIGR03169         2 LVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT   37 (364)
T ss_pred             EEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC
Confidence            8999999999999999963    6899999998764

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=92.21  E-value=0.14  Score=54.21  Aligned_cols=35  Identities=23%  Similarity=0.323  Sum_probs=32.0

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPY   76 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~   76 (570)
                      -.|-|||||++|+.+|..|+. |.+|++.|+-+...
T Consensus       124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~G  159 (457)
T COG0493         124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDG  159 (457)
T ss_pred             CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCc
Confidence            579999999999999999999 99999999887544

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=91.56  E-value=1.1  Score=47.75  Aligned_cols=30  Identities=23%  Similarity=0.469  Sum_probs=27.3

Q ss_pred             cEEEECCCCchhHHHHhhhc-cC-eEEEEccC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NA-TVLLLEKG   72 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~-~VlvLE~G   72 (570)
                      .|+|||+|..|+-+|..|++ |. +|.|+++.
T Consensus       275 ~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~  306 (457)
T PRK11749        275 RVVVIGGGNTAMDAARTAKRLGAESVTIVYRR  306 (457)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEeeec
Confidence            69999999999999999998 87 89999865

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=91.44  E-value=0.4  Score=50.40  Aligned_cols=58  Identities=14%  Similarity=0.004  Sum_probs=43.6

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHH
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQL  281 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~L  281 (570)
                      +.+..++.|++++++++|+++..+++     +++.|..  .+|+...+.     ++.||||+|.+.+..|
T Consensus       265 L~~~l~~~Gv~I~~g~~V~~v~~~~~-----~V~~v~~--~~g~~~~i~-----AD~VVLAtGrf~s~GL  322 (422)
T PRK05329        265 LRRAFERLGGRIMPGDEVLGAEFEGG-----RVTAVWT--RNHGDIPLR-----ARHFVLATGSFFSGGL  322 (422)
T ss_pred             HHHHHHhCCCEEEeCCEEEEEEEeCC-----EEEEEEe--eCCceEEEE-----CCEEEEeCCCcccCce
Confidence            44456678999999999999988765     6776663  356555564     7999999998866554

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=90.86  E-value=0.19  Score=46.63  Aligned_cols=30  Identities=23%  Similarity=0.360  Sum_probs=28.1

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKG   72 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G   72 (570)
                      .|+|||||+|+-.+|..+++ .+|-+|.|-.
T Consensus        10 ~v~IiGSGPAa~tAAiYaaraelkPllfEG~   40 (322)
T KOG0404|consen   10 NVVIIGSGPAAHTAAIYAARAELKPLLFEGM   40 (322)
T ss_pred             eEEEEccCchHHHHHHHHhhcccCceEEeee
Confidence            69999999999999999999 9999999954

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=90.78  E-value=0.19  Score=52.53  Aligned_cols=35  Identities=26%  Similarity=0.356  Sum_probs=32.3

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPY   76 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~   76 (570)
                      -+++|||+|..|+.+|..|++ |.+|.++|+.+...
T Consensus       137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~  172 (415)
T COG0446         137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLG  172 (415)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccc
Confidence            589999999999999999999 99999999997653

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=90.71  E-value=1.1  Score=51.12  Aligned_cols=31  Identities=26%  Similarity=0.401  Sum_probs=27.7

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCe-EEEEccCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NAT-VLLLEKGG   73 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~-VlvLE~G~   73 (570)
                      .|||||+|..|+-+|..|.+ |.+ |.|+++..
T Consensus       572 ~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~  604 (752)
T PRK12778        572 KVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS  604 (752)
T ss_pred             cEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            69999999999999999999 876 99998663

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=90.11  E-value=0.23  Score=44.04  Aligned_cols=30  Identities=33%  Similarity=0.531  Sum_probs=28.1

Q ss_pred             EEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           44 YIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        44 vIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      ++|+|+|+.|+..|.+|++ |.+|.++-|..
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence            5899999999999999999 99999999885

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=89.88  E-value=0.42  Score=54.31  Aligned_cols=38  Identities=24%  Similarity=0.298  Sum_probs=34.3

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYE   77 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~   77 (570)
                      .-.-|-|||||++|+++|..|-+ |..|+|-||.++..+
T Consensus      1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~gg 1822 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGG 1822 (2142)
T ss_pred             cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCc
Confidence            34679999999999999999999 999999999987664

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=89.75  E-value=0.12  Score=49.10  Aligned_cols=33  Identities=36%  Similarity=0.630  Sum_probs=29.3

Q ss_pred             EEEECCCCchhHHHHhhhc---cCeEEEEccCCCCC
Q 008331           44 YIIVGGGTSGCPLAATLSQ---NATVLLLEKGGSPY   76 (570)
Q Consensus        44 vIIVGsG~aG~~~A~~La~---g~~VlvLE~G~~~~   76 (570)
                      +||||+|.||.++|..||.   ..+||+|-+.+...
T Consensus         2 fivvgggiagvscaeqla~~~psa~illitass~vk   37 (334)
T KOG2755|consen    2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVK   37 (334)
T ss_pred             eEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHH
Confidence            7999999999999999997   68999998887554

>COG4716 Myosin-crossreactive antigen [Function unknown]

Probab=89.70  E-value=1.2  Score=44.72  Aligned_cols=57  Identities=14%  Similarity=0.216  Sum_probs=38.7

Q ss_pred             hhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCcc
Q 008331          214 EYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAI  276 (570)
Q Consensus       214 ~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~  276 (570)
                      ...+.+++++-.+.+|++|.++... +++.+..+.+. .+++..++.    ..+.|++..|.+
T Consensus       235 ~yL~~H~Vdf~~~~~Vedi~v~~t~-gkkvA~aih~~-~d~~~ieLt----~dDlVfvTNgsi  291 (587)
T COG4716         235 TYLKSHGVDFTYDQKVEDIDVDDTP-GKKVAKAIHVL-GDAETIELT----PDDLVFVTNGSI  291 (587)
T ss_pred             HHHHHcCCceEeccEEeeeeeccCc-chhHHHHHHHh-cCcceeecC----CCceEEEeccee
Confidence            3567899999999999999998753 11222233322 355554444    779999999976

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=89.37  E-value=0.32  Score=46.44  Aligned_cols=32  Identities=31%  Similarity=0.590  Sum_probs=29.5

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      .++|||+|-.|..+|..|++ |..|+++|+-..
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~   34 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE   34 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence            48999999999999999999 999999998753

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=89.14  E-value=0.36  Score=50.00  Aligned_cols=34  Identities=24%  Similarity=0.439  Sum_probs=30.6

Q ss_pred             cEEEECCCCchhHHHHhhhc-c--CeEEEEccCCCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-N--ATVLLLEKGGSPY   76 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g--~~VlvLE~G~~~~   76 (570)
                      -+||||||.+|+.+|.+|.. .  .+|+++|+-.+..
T Consensus         5 ~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl   41 (405)
T COG1252           5 RIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHL   41 (405)
T ss_pred             eEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccc
Confidence            48999999999999999999 5  8899999998654

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=88.47  E-value=0.4  Score=50.19  Aligned_cols=33  Identities=36%  Similarity=0.526  Sum_probs=30.3

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      .++|||+|..|+-+|..|++ |.+|.|+|+++..
T Consensus       146 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~  179 (396)
T PRK09754        146 SVVIVGAGTIGLELAASATQRRCKVTVIELAATV  179 (396)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence            69999999999999999999 9999999998643

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=88.26  E-value=1.1  Score=48.46  Aligned_cols=69  Identities=12%  Similarity=0.058  Sum_probs=46.5

Q ss_pred             CCccccHHHhhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEec-CCceEEEEecCCCCceEEEcCCccccHHH
Q 008331          203 DGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDH-VGARHRACLNNGGKNEIILSAGAIGSPQL  281 (570)
Q Consensus       203 ~g~r~~~~~~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~-~G~~~~v~~~~~aa~~VVLaaGa~~tp~L  281 (570)
                      .|...-+..+.+.+++.|.+|+++++|++|+.+++     ++++|.+.+. .|....+     .++.||+++-...+.+|
T Consensus       229 GG~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~-----~~~gv~~~~~~~~~~~~~-----~ad~VI~~~~~~~~~~l  298 (492)
T TIGR02733       229 GSMQTLSDRLVEALKRDGGNLLTGQRVTAIHTKGG-----RAGWVVVVDSRKQEDLNV-----KADDVVANLPPQSLLEL  298 (492)
T ss_pred             CcHHHHHHHHHHHHHhcCCEEeCCceEEEEEEeCC-----eEEEEEEecCCCCceEEE-----ECCEEEECCCHHHHHHh
Confidence            34333333455556668999999999999999876     7888887642 1222334     37899999887555443

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=87.75  E-value=1.6  Score=44.60  Aligned_cols=36  Identities=22%  Similarity=0.339  Sum_probs=26.8

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-c--CeEEEEccCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-N--ATVLLLEKGGS   74 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g--~~VlvLE~G~~   74 (570)
                      .....|+|||||-+++-++..|.+ +  .+|.++=|++.
T Consensus       188 ~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~  226 (341)
T PF13434_consen  188 LAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPG  226 (341)
T ss_dssp             ---EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS
T ss_pred             cCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCc
Confidence            345679999999999999999988 5  48888887753

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=87.24  E-value=0.51  Score=50.10  Aligned_cols=33  Identities=24%  Similarity=0.435  Sum_probs=30.4

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      .++|||+|..|+-+|..|++ |.+|.|+|+++..
T Consensus       159 ~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~  192 (438)
T PRK07251        159 RLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTI  192 (438)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence            69999999999999999999 9999999998643

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=87.17  E-value=0.54  Score=48.82  Aligned_cols=34  Identities=32%  Similarity=0.517  Sum_probs=30.7

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      -.++|||+|..|+-+|..|++ |.+|.++|+++..
T Consensus       142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~  176 (377)
T PRK04965        142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASL  176 (377)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcc
Confidence            369999999999999999999 9999999998643

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=87.08  E-value=0.52  Score=43.94  Aligned_cols=33  Identities=27%  Similarity=0.482  Sum_probs=27.1

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      -.|+|||+|.++.-+|..|++ |.+|.++=|.+.
T Consensus       168 k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~  201 (203)
T PF13738_consen  168 KRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI  201 (203)
T ss_dssp             SEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred             CcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence            479999999999999999999 999999988764

...

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=87.04  E-value=0.46  Score=42.56  Aligned_cols=30  Identities=30%  Similarity=0.463  Sum_probs=27.5

Q ss_pred             EEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           44 YIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        44 vIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      |.|+|+|..|.++|..|++ |.+|.|..+-.
T Consensus         2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~   32 (157)
T PF01210_consen    2 IAVIGAGNWGTALAALLADNGHEVTLWGRDE   32 (157)
T ss_dssp             EEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred             EEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence            6899999999999999999 99999998753

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=86.69  E-value=0.7  Score=42.66  Aligned_cols=30  Identities=30%  Similarity=0.474  Sum_probs=24.4

Q ss_pred             EEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           44 YIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        44 vIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      |.|||.|..|+.+|..||+ |.+|+.+|...
T Consensus         3 I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~   33 (185)
T PF03721_consen    3 IAVIGLGYVGLPLAAALAEKGHQVIGVDIDE   33 (185)
T ss_dssp             EEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred             EEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence            7899999999999999999 99999999764

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=86.57  E-value=0.57  Score=47.08  Aligned_cols=31  Identities=26%  Similarity=0.432  Sum_probs=29.0

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      .+.|||+|+.|+..|.+|++ |.+|.++.|+.
T Consensus         4 ~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~   35 (305)
T PRK05708          4 TWHILGAGSLGSLWACRLARAGLPVRLILRDR   35 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence            58999999999999999999 99999999974

>PRK07846 mycothione reductase; Reviewed

Probab=86.40  E-value=0.62  Score=49.68  Aligned_cols=33  Identities=27%  Similarity=0.492  Sum_probs=30.6

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~  200 (451)
T PRK07846        167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGR  200 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence            479999999999999999999 999999999864

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=86.10  E-value=2  Score=49.40  Aligned_cols=54  Identities=19%  Similarity=0.225  Sum_probs=41.0

Q ss_pred             hcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEec-------CC-------------------ceEEEEecCCCCce
Q 008331          215 YADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDH-------VG-------------------ARHRACLNNGGKNE  268 (570)
Q Consensus       215 ~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~-------~G-------------------~~~~v~~~~~aa~~  268 (570)
                      .|.+.|+++..++.-.+|+.|+++    ++++|++..-       .|                   ...++     .++.
T Consensus       649 ~A~eEGV~f~~~~~P~~i~~d~~g----~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-----~~~~  719 (1028)
T PRK06567        649 YALALGVDFKENMQPLRINVDKYG----HVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDI-----KTKT  719 (1028)
T ss_pred             HHHHcCcEEEecCCcEEEEecCCC----eEEEEEEEEEecccccccccccccccccCCcCcccCCCccccc-----cCCE
Confidence            567789999999999999988765    9999988631       11                   22333     5899


Q ss_pred             EEEcCCccc
Q 008331          269 IILSAGAIG  277 (570)
Q Consensus       269 VVLaaGa~~  277 (570)
                      ||+|+|.--
T Consensus       720 vi~A~G~~~  728 (1028)
T PRK06567        720 VIMAIGIEN  728 (1028)
T ss_pred             EEEecccCC
Confidence            999999643

>TIGR02053 MerA mercuric reductase

Probab=86.01  E-value=0.64  Score=49.80  Aligned_cols=33  Identities=24%  Similarity=0.549  Sum_probs=30.4

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus       167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~  200 (463)
T TIGR02053       167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDR  200 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCc
Confidence            369999999999999999999 999999999864

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=85.99  E-value=0.67  Score=49.54  Aligned_cols=32  Identities=34%  Similarity=0.667  Sum_probs=29.9

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      .++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus       172 ~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~  204 (458)
T PRK06912        172 SLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQ  204 (458)
T ss_pred             cEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence            69999999999999999999 999999999864

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=85.69  E-value=0.67  Score=49.71  Aligned_cols=33  Identities=18%  Similarity=0.348  Sum_probs=30.5

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      .++|||+|..|+-+|..|++ |.+|.|+|+++..
T Consensus       176 ~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~i  209 (471)
T PRK06467        176 RLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQV  209 (471)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence            69999999999999999999 9999999998743

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=85.69  E-value=0.68  Score=49.38  Aligned_cols=33  Identities=24%  Similarity=0.304  Sum_probs=30.5

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      .++|||+|..|+-+|..|++ |.+|.|+|+++..
T Consensus       168 ~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~i  201 (450)
T TIGR01421       168 RVVIVGAGYIAVELAGVLHGLGSETHLVIRHERV  201 (450)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence            69999999999999999999 9999999998643

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=85.19  E-value=0.72  Score=42.37  Aligned_cols=30  Identities=27%  Similarity=0.459  Sum_probs=25.7

Q ss_pred             EEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           44 YIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        44 vIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      |.|||+|..|...|..++. |++|.+++..+
T Consensus         2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~   32 (180)
T PF02737_consen    2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSP   32 (180)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred             EEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence            6899999999999999999 99999999764

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=85.05  E-value=0.78  Score=48.55  Aligned_cols=33  Identities=30%  Similarity=0.582  Sum_probs=31.0

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      -++|||+|..|+-.|.-++. |.+|.|||+++..
T Consensus       175 ~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~i  208 (454)
T COG1249         175 SLVIVGGGYIGLEFASVFAALGSKVTVVERGDRI  208 (454)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence            49999999999999999999 9999999999865

>PRK06370 mercuric reductase; Validated

Probab=84.79  E-value=0.81  Score=48.99  Aligned_cols=34  Identities=26%  Similarity=0.514  Sum_probs=30.8

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+++..
T Consensus       172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~  206 (463)
T PRK06370        172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRL  206 (463)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCC
Confidence            369999999999999999999 9999999998643

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=84.50  E-value=0.73  Score=47.74  Aligned_cols=35  Identities=37%  Similarity=0.649  Sum_probs=29.9

Q ss_pred             cccEEEECCCCchhHHHHhhhc--c------------CeEEEEccCCCC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ--N------------ATVLLLEKGGSP   75 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~--g------------~~VlvLE~G~~~   75 (570)
                      .-+++|||||+.|.=+|.+|++  .            .+|.|+|+++..
T Consensus       155 ~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~I  203 (405)
T COG1252         155 LLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRI  203 (405)
T ss_pred             eeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchh
Confidence            3579999999999999999986  2            289999999865

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=84.16  E-value=0.9  Score=48.63  Aligned_cols=33  Identities=24%  Similarity=0.437  Sum_probs=30.3

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      .++|||+|..|+-+|..|++ |.+|.++|+++..
T Consensus       174 ~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~  207 (462)
T PRK06416        174 SLVVIGGGYIGVEFASAYASLGAEVTIVEALPRI  207 (462)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCc
Confidence            69999999999999999999 9999999998643

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=84.15  E-value=0.92  Score=48.62  Aligned_cols=33  Identities=21%  Similarity=0.358  Sum_probs=30.1

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      .++|||+|..|+-+|..|++ |.+|.|+|+++..
T Consensus       176 ~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~i  209 (466)
T PRK06115        176 HLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRI  209 (466)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCC
Confidence            68999999999999999999 9999999998643

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=83.96  E-value=0.91  Score=48.03  Aligned_cols=32  Identities=28%  Similarity=0.580  Sum_probs=29.7

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      .++|||+|..|+-+|..|++ |.+|.++++++.
T Consensus       139 ~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~  171 (427)
T TIGR03385       139 NVVIIGGGYIGIEMAEALRERGKNVTLIHRSER  171 (427)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcc
Confidence            69999999999999999999 999999998864

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=83.91  E-value=0.9  Score=48.91  Aligned_cols=31  Identities=29%  Similarity=0.488  Sum_probs=28.7

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      .++|||+|.+|+.+|..|++ |.+|.++|+.+
T Consensus        18 ~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~   49 (480)
T PRK01438         18 RVVVAGLGVSGFAAADALLELGARVTVVDDGD   49 (480)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            59999999999999999999 99999999764

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=83.86  E-value=0.96  Score=45.65  Aligned_cols=31  Identities=26%  Similarity=0.305  Sum_probs=28.9

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      .+.|||+|..|+..|..|++ |.+|.++.|+.
T Consensus         7 ~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~   38 (313)
T PRK06249          7 RIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD   38 (313)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            59999999999999999999 99999998874

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=83.35  E-value=1  Score=48.18  Aligned_cols=33  Identities=27%  Similarity=0.504  Sum_probs=30.3

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      .++|||+|..|+-+|..|++ |.+|.|+|+++..
T Consensus       177 ~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~  210 (461)
T PRK05249        177 SLIIYGAGVIGCEYASIFAALGVKVTLINTRDRL  210 (461)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence            59999999999999999999 9999999998643

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=83.29  E-value=0.95  Score=48.08  Aligned_cols=32  Identities=16%  Similarity=0.285  Sum_probs=29.7

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      .++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus       150 ~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~  182 (438)
T PRK13512        150 KALVVGAGYISLEVLENLYERGLHPTLIHRSDK  182 (438)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence            69999999999999999999 999999998863

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=83.00  E-value=1.1  Score=48.03  Aligned_cols=33  Identities=30%  Similarity=0.584  Sum_probs=30.3

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      .++|||+|..|+-+|..|++ |.+|.|+|+++..
T Consensus       171 ~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~  204 (460)
T PRK06292        171 SLAVIGGGVIGLELGQALSRLGVKVTVFERGDRI  204 (460)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Confidence            69999999999999999999 9999999998643

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=82.94  E-value=1  Score=48.10  Aligned_cols=31  Identities=26%  Similarity=0.338  Sum_probs=28.6

Q ss_pred             EEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           44 YIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        44 vIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      |.|||.|.+|+++|..|++ |.+|.+.|+...
T Consensus         3 v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~   34 (459)
T PRK02705          3 AHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS   34 (459)
T ss_pred             EEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence            7999999999999999999 999999998754

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=82.92  E-value=2.2  Score=45.74  Aligned_cols=35  Identities=26%  Similarity=0.236  Sum_probs=31.9

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYE   77 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~   77 (570)
                      +++|||+|.+|+++|++|++ |.+|+|+|+.+...+
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG   36 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGG   36 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCc
Confidence            48999999999999999999 999999999876654

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=82.65  E-value=0.89  Score=47.55  Aligned_cols=27  Identities=22%  Similarity=0.158  Sum_probs=24.5

Q ss_pred             CchhHHHHhhhc-cCeEEEEccCCCCCC
Q 008331           51 TSGCPLAATLSQ-NATVLLLEKGGSPYE   77 (570)
Q Consensus        51 ~aG~~~A~~La~-g~~VlvLE~G~~~~~   77 (570)
                      .||+++|++|++ |.+|+|||+.+..++
T Consensus         1 iaGL~aA~~L~~~G~~v~vlEa~~r~GG   28 (450)
T PF01593_consen    1 IAGLAAAYYLAKAGYDVTVLEASDRVGG   28 (450)
T ss_dssp             HHHHHHHHHHHHTTTEEEEEESSSSSBT
T ss_pred             ChHHHHHHHHHhCCCCEEEEEcCCCCCc
Confidence            379999999999 999999999987765

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>TIGR03452 mycothione_red mycothione reductase

Probab=82.60  E-value=1.1  Score=47.79  Aligned_cols=33  Identities=24%  Similarity=0.435  Sum_probs=30.2

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus       170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~  203 (452)
T TIGR03452       170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTK  203 (452)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCc
Confidence            369999999999999999999 999999998864

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PLN02487 zeta-carotene desaturase

Probab=82.52  E-value=2.6  Score=46.14  Aligned_cols=37  Identities=22%  Similarity=0.179  Sum_probs=33.5

Q ss_pred             cccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYE   77 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~   77 (570)
                      ..+|+|||+|.+|+++|++|++ |++|+|+|+.+...+
T Consensus        75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG  112 (569)
T PLN02487         75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGG  112 (569)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCC
Confidence            4699999999999999999999 999999999886653

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=82.15  E-value=1.2  Score=47.45  Aligned_cols=32  Identities=25%  Similarity=0.418  Sum_probs=29.8

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      .++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus       168 ~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~  200 (446)
T TIGR01424       168 SILILGGGYIAVEFAGIWRGLGVQVTLIYRGEL  200 (446)
T ss_pred             eEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCC
Confidence            58999999999999999999 999999999864

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=82.15  E-value=1.1  Score=44.79  Aligned_cols=28  Identities=25%  Similarity=0.455  Sum_probs=26.9

Q ss_pred             EEEECCCCchhHHHHhhhc-cCeEEEEcc
Q 008331           44 YIIVGGGTSGCPLAATLSQ-NATVLLLEK   71 (570)
Q Consensus        44 vIIVGsG~aG~~~A~~La~-g~~VlvLE~   71 (570)
                      +.|||+|..|+..|..|++ |.+|.++.+
T Consensus         3 I~IiG~G~iG~~~a~~L~~~g~~V~~~~r   31 (305)
T PRK12921          3 IAVVGAGAVGGTFGGRLLEAGRDVTFLVR   31 (305)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence            7899999999999999999 999999988

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=82.05  E-value=1.2  Score=37.21  Aligned_cols=30  Identities=23%  Similarity=0.495  Sum_probs=26.8

Q ss_pred             EEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           44 YIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        44 vIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      |||+|.|..|..+|..|.+ +.+|+++|+.+
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~   31 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP   31 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence            7999999999999999999 77999999775

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK04148 hypothetical protein; Provisional

Probab=81.84  E-value=1.4  Score=37.98  Aligned_cols=31  Identities=16%  Similarity=0.232  Sum_probs=27.5

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      -+++||.| .|..+|..|++ |.+|+.+|..+.
T Consensus        19 kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~   50 (134)
T PRK04148         19 KIVELGIG-FYFKVAKKLKESGFDVIVIDINEK   50 (134)
T ss_pred             EEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence            49999999 88888999999 999999997753

>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]

Probab=81.73  E-value=0.76  Score=44.81  Aligned_cols=27  Identities=22%  Similarity=0.458  Sum_probs=24.8

Q ss_pred             EEEECCCCchhHHHHhhhc-c-CeEEEEc
Q 008331           44 YIIVGGGTSGCPLAATLSQ-N-ATVLLLE   70 (570)
Q Consensus        44 vIIVGsG~aG~~~A~~La~-g-~~VlvLE   70 (570)
                      |||||+|-.|+-++..|.+ | .|+.+++
T Consensus        77 VVVVG~GgVGSwv~nmL~RSG~qKi~iVD  105 (430)
T KOG2018|consen   77 VVVVGAGGVGSWVANMLLRSGVQKIRIVD  105 (430)
T ss_pred             EEEEecCchhHHHHHHHHHhcCceEEEec
Confidence            8999999999999999999 8 5788887

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=81.59  E-value=1.3  Score=44.39  Aligned_cols=29  Identities=31%  Similarity=0.479  Sum_probs=27.3

Q ss_pred             EEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331           44 YIIVGGGTSGCPLAATLSQ-NATVLLLEKG   72 (570)
Q Consensus        44 vIIVGsG~aG~~~A~~La~-g~~VlvLE~G   72 (570)
                      +.|||+|..|+..|..|++ |.+|.++.+.
T Consensus         3 I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~   32 (304)
T PRK06522          3 IAILGAGAIGGLFGAALAQAGHDVTLVARR   32 (304)
T ss_pred             EEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            7899999999999999999 9999999974

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=81.13  E-value=1.4  Score=49.08  Aligned_cols=33  Identities=21%  Similarity=0.186  Sum_probs=30.4

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      .++|||+|..|+-.|..|++ |.+|.|+|+++..
T Consensus       314 ~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~l  347 (659)
T PTZ00153        314 YMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQL  347 (659)
T ss_pred             ceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcc
Confidence            69999999999999999999 9999999998753

>PTZ00058 glutathione reductase; Provisional

Probab=80.98  E-value=1.4  Score=48.29  Aligned_cols=33  Identities=18%  Similarity=0.300  Sum_probs=30.3

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      -.++|||+|..|+-+|..|++ |.+|.++|+++.
T Consensus       238 k~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~  271 (561)
T PTZ00058        238 KRIGIAGSGYIAVELINVVNRLGAESYIFARGNR  271 (561)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccc
Confidence            369999999999999999999 999999999864

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=80.85  E-value=1.3  Score=44.65  Aligned_cols=31  Identities=23%  Similarity=0.338  Sum_probs=28.7

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      .|.|||+|..|+..|..|++ |.+|.++++.+
T Consensus         4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~   35 (308)
T PRK06129          4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADP   35 (308)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence            48999999999999999999 99999999774

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=80.58  E-value=1  Score=37.08  Aligned_cols=31  Identities=26%  Similarity=0.380  Sum_probs=27.3

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKG   72 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G   72 (570)
                      --++|||+|..|..-+..|.+ |.+|.|+-..
T Consensus         8 ~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~   39 (103)
T PF13241_consen    8 KRVLVVGGGPVAARKARLLLEAGAKVTVISPE   39 (103)
T ss_dssp             -EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence            459999999999999999999 9999998754

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=80.37  E-value=1.4  Score=48.32  Aligned_cols=31  Identities=23%  Similarity=0.437  Sum_probs=29.3

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      .++|||+|..|+-+|..|++ |.+|.++++++
T Consensus       145 ~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~  176 (555)
T TIGR03143       145 DVFVIGGGFAAAEEAVFLTRYASKVTVIVREP  176 (555)
T ss_pred             EEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence            69999999999999999999 99999999885

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=80.30  E-value=1.5  Score=38.17  Aligned_cols=31  Identities=19%  Similarity=0.449  Sum_probs=27.5

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCe-EEEEccC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NAT-VLLLEKG   72 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~-VlvLE~G   72 (570)
                      --++|||+|-+|-.++..|++ |.+ |.|+-|.
T Consensus        13 ~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt   45 (135)
T PF01488_consen   13 KRVLVIGAGGAARAVAAALAALGAKEITIVNRT   45 (135)
T ss_dssp             SEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred             CEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence            469999999999999999999 866 9998875

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PLN02507 glutathione reductase

Probab=80.16  E-value=1.5  Score=47.37  Aligned_cols=32  Identities=25%  Similarity=0.315  Sum_probs=29.8

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      .++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus       205 ~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~  237 (499)
T PLN02507        205 RAVVLGGGYIAVEFASIWRGMGATVDLFFRKEL  237 (499)
T ss_pred             eEEEECCcHHHHHHHHHHHHcCCeEEEEEecCC
Confidence            69999999999999999999 999999998864

>PRK06116 glutathione reductase; Validated

Probab=80.10  E-value=1.6  Score=46.54  Aligned_cols=33  Identities=21%  Similarity=0.356  Sum_probs=30.2

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      -.++|||+|..|+-+|..|++ |.+|.++++++.
T Consensus       168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  201 (450)
T PRK06116        168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDA  201 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence            369999999999999999999 999999998864

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=80.09  E-value=1.6  Score=40.82  Aligned_cols=29  Identities=31%  Similarity=0.489  Sum_probs=26.8

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEcc
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEK   71 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~   71 (570)
                      -++|||+|-.|...|..|.+ |.+|.|+++
T Consensus        12 ~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~   41 (202)
T PRK06718         12 RVVIVGGGKVAGRRAITLLKYGAHIVVISP   41 (202)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEEcC
Confidence            59999999999999999999 999999974

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	570
3red_A	521	3.0 A Structure Of The Prunus Mume Hydroxynitrile L		1e-103
1ju2_A	536	Crystal Structure Of The Hydroxynitrile Lyase From		1e-101
3gdn_A	521	Almond Hydroxynitrile Lyase In Complex With Benzald		1e-101
3fim_B	566	Crystal Structure Of Aryl-Alcohol-Oxidase From Pleu		4e-24
3nne_A	546	Crystal Structure Of Choline Oxidase S101a Mutant L		2e-21
2jbv_A	546	Crystal Structure Of Choline Oxidase Reveals Insigh		2e-21
3ljp_A	546	Crystal Structure Of Choline Oxidase V464a Mutant L		6e-21
3q9t_A	577	Crystal Structure Analysis Of Formate Oxidase Lengt		2e-18
3t37_A	526	Crystal Structure Of Pyridoxine 4-Oxidase From Meso		3e-15
1cf3_A	583	Glucose Oxidase From Apergillus Niger Length = 583		1e-09
1naa_A	541	Cellobiose Dehydrogenase Flavoprotein Fragment In C		2e-09
1kdg_A	546	Crystal Structure Of The Flavin Domain Of Cellobios		4e-09
1gpe_A	587	Glucose Oxidase From Penicillium Amagasakiense Leng		7e-09

>pdb|3RED|A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 Length = 521

Iteration: 1
 Score =  371 bits (953), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 219/549 (39%), Positives = 310/549 (56%), Gaps = 50/549 (9%)
Query: 26  YYTFVKDATSAPLISYYDYIIVGGGTSGCPLAATLSQNATVLLLEKGGSPYENPNITDTG 85
           Y +F  DAT   L   YDY+IVGGGTSGCPLAATLS+   VL+LE+G  P   PN+  + 
Sbjct: 11  YLSFAYDATDLELEGSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGTLPTAYPNLLTSD 70
Query: 86  NFATTLL-DPSPTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRASLRYVREVG--WT 142
            F   L  +    +P ++F+S DG+ + R RVLGG S+INAG Y RA+ +     G  W 
Sbjct: 71  GFIYNLQQEDDGQTPVERFVSGDGIDDVRGRVLGGTSMINAGVYARANTKIFSASGIEWD 130
Query: 143 ESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLLEAGVLPYNGFTFDHIYGTKVSGTIFDE 202
             LVN +Y+WVE  + ++P    WQS  +   LEAGVLP NGF+ DH  GT+++G+ FD 
Sbjct: 131 MDLVNQTYDWVEDTIVYKPDKQAWQSLTKTAFLEAGVLPDNGFSLDHEAGTRLTGSTFDN 190
Query: 203 DGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLN 262
           +G RH++ +LL   DP  L V + A V++I F+       TA  V + D  G  H+A + 
Sbjct: 191 NGTRHASDELLNKGDPNNLRVAVHASVEKIIFSSNSSGV-TAIGVIYKDSNGTPHQAFVR 249
Query: 263 NGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMNALFVP 322
             G+ E+I+SAG IGSPQLL+LSGVGP + L    I VV+  P VGQ + DNP N + + 
Sbjct: 250 --GEGEVIVSAGPIGSPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNPRNFINIL 307
Query: 323 SARPVEVSLVQVVGIT-RFDSYIETASGLSLAPSWAQGLTRDYSSFLNKTDIPSLVTPET 381
              P+E S V V+GIT  F     ++   S+ P         ++ F N    P+   P +
Sbjct: 308 PPNPIEPSTVTVLGITSNFYQCSFSSLPFSIPP---------FAFFPN----PTYPLPNS 354
Query: 382 VAEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHLRLRTLDADDN----PSVTFNYFQEPE 437
                                V K+ GP S G +   TL++D +    P+V FNY+    
Sbjct: 355 TFAH----------------FVNKVPGPLSYGSI---TLNSDSDVRVAPNVKFNYYSNST 395
Query: 438 DLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLM-VNIPTNLRPRHVVGASISLEQ 496
           DL  CV GM+ I ++L+S AL  ++  D+   +  D++ + +P N           + E 
Sbjct: 396 DLAHCVSGMKKIGELLSSDALKPYKVEDLPGIDGFDILGIPLPENQT------DDAAFET 449
Query: 497 FCRDTVMTIWHYHGGCQVDRVVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLGRY 556
           FCR+ V + WHYHGGC V  V+D D++V G++ LRV+DGSTF  SP ++PQ   +MLGRY
Sbjct: 450 FCREAVASYWHYHGGCLVGEVLDGDFRVTGINALRVVDGSTFPYSPASHPQGFYLMLGRY 509
Query: 557 MGLRILQDR 565
           +G +ILQ+R
Sbjct: 510 VGSKILQER 518

>pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond Length = 536

Iteration: 1
 Score =  366 bits (940), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 216/544 (39%), Positives = 308/544 (56%), Gaps = 41/544 (7%)
Query: 26  YYTFVKDATSAPLISYYDYIIVGGGTSGCPLAATLSQNATVLLLEKGGSPYENPNITDTG 85
           Y +F  DAT   L   YDY+IVGGGTSGCPLAATLS+   VL+LE+G  P   PN+    
Sbjct: 11  YLSFAYDATDLELEGSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSLPTAYPNVLTAD 70
Query: 86  NFATTLL-DPSPTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRA--SLRYVREVGWT 142
            F   L  +    +P ++F+SEDG+ N R RVLGG S+INAG Y RA  S+     V W 
Sbjct: 71  GFVYNLQQEDDGKTPVERFVSEDGIDNVRGRVLGGTSIINAGVYARANTSIYSASGVDWD 130
Query: 143 ESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLLEAGVLPYNGFTFDHIYGTKVSGTIFDE 202
             LVN +YEWVE  + ++P    WQS  +   LEAGV P +GF+ DH  GT+++G+ FD 
Sbjct: 131 MDLVNQTYEWVEDTIVYKPNSQSWQSVTKTAFLEAGVHPNHGFSLDHEEGTRITGSTFDN 190
Query: 203 DGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLN 262
            G RH+A +LL   +   L V + A V++I F+       TA  V + D  G  H+A + 
Sbjct: 191 KGTRHAADELLNKGNSNNLRVGVHASVEKIIFSNA--PGLTATGVIYRDSNGTPHQAFVR 248
Query: 263 NGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMNALFVP 322
           +  K E+I+SAG IG+PQLL+LSGVGP + L    I VV+  P VGQ + DNP N + + 
Sbjct: 249 S--KGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNPRNFINIL 306
Query: 323 SARPVEVSLVQVVGITRFDSYIETASGLSLAPSWAQGLTRDYSSFLNKTDIPSLVTPETV 382
              P+E ++V V+GI+  D Y  + S L          T     F   +  P  +   T 
Sbjct: 307 PPNPIEPTIVTVLGISN-DFYQCSFSSLP--------FTTPPFGFFPSSSYP--LPNSTF 355
Query: 383 AEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHLRLR-TLDADDNPSVTFNYFQEPEDLVR 441
           A                     K+ GP S G L L+ + +   +P+V FNY+    DL  
Sbjct: 356 AH-----------------FASKVAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNLTDLSH 398
Query: 442 CVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLMVNIPTNLRPRHVVGASISLEQFCRDT 501
           CV GM+ I ++L++ AL  ++  D+   E  +++  IP    P+     + + E FCR++
Sbjct: 399 CVSGMKKIGELLSTDALKPYKVEDLPGVEGFNIL-GIPL---PKDQTDDA-AFETFCRES 453
Query: 502 VMTIWHYHGGCQVDRVVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLGRYMGLRI 561
           V + WHYHGGC V +V+D D++V G++ LRV+DGSTF  +P ++PQ   +MLGRY+G++I
Sbjct: 454 VASYWHYHGGCLVGKVLDGDFRVTGINALRVVDGSTFPYTPASHPQGFYLMLGRYVGIKI 513
Query: 562 LQDR 565
           LQ+R
Sbjct: 514 LQER 517

>pdb|3GDN|A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde Length = 521

Iteration: 1
 Score =  366 bits (939), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 216/544 (39%), Positives = 308/544 (56%), Gaps = 41/544 (7%)
Query: 26  YYTFVKDATSAPLISYYDYIIVGGGTSGCPLAATLSQNATVLLLEKGGSPYENPNITDTG 85
           Y +F  DAT   L   YDY+IVGGGTSGCPLAATLS+   VL+LE+G  P   PN+    
Sbjct: 11  YLSFAYDATDLELEGSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSLPTAYPNVLTAD 70
Query: 86  NFATTLL-DPSPTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRA--SLRYVREVGWT 142
            F   L  +    +P ++F+SEDG+ N R RVLGG S+INAG Y RA  S+     V W 
Sbjct: 71  GFVYNLQQEDDGKTPVERFVSEDGIDNVRGRVLGGTSIINAGVYARANTSIYSASGVDWD 130
Query: 143 ESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLLEAGVLPYNGFTFDHIYGTKVSGTIFDE 202
             LVN +YEWVE  + ++P    WQS  +   LEAGV P +GF+ DH  GT+++G+ FD 
Sbjct: 131 MDLVNQTYEWVEDTIVYKPNSQSWQSVTKTAFLEAGVHPNHGFSLDHEEGTRITGSTFDN 190
Query: 203 DGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLN 262
            G RH+A +LL   +   L V + A V++I F+       TA  V + D  G  H+A + 
Sbjct: 191 KGTRHAADELLNKGNSNNLRVGVHASVEKIIFSNA--PGLTATGVIYRDSNGTPHQAFVR 248
Query: 263 NGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMNALFVP 322
           +  K E+I+SAG IG+PQLL+LSGVGP + L    I VV+  P VGQ + DNP N + + 
Sbjct: 249 S--KGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNPRNFINIL 306
Query: 323 SARPVEVSLVQVVGITRFDSYIETASGLSLAPSWAQGLTRDYSSFLNKTDIPSLVTPETV 382
              P+E ++V V+GI+  D Y  + S L          T     F   +  P  +   T 
Sbjct: 307 PPNPIEPTIVTVLGISN-DFYQCSFSSLP--------FTTPPFGFFPSSSYP--LPNSTF 355
Query: 383 AEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHLRLR-TLDADDNPSVTFNYFQEPEDLVR 441
           A                     K+ GP S G L L+ + +   +P+V FNY+    DL  
Sbjct: 356 AH-----------------FASKVAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNLTDLSH 398
Query: 442 CVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLMVNIPTNLRPRHVVGASISLEQFCRDT 501
           CV GM+ I ++L++ AL  ++  D+   E  +++  IP    P+     + + E FCR++
Sbjct: 399 CVSGMKKIGELLSTDALKPYKVEDLPGVEGFNIL-GIPL---PKDQTDDA-AFETFCRES 453
Query: 502 VMTIWHYHGGCQVDRVVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLGRYMGLRI 561
           V + WHYHGGC V +V+D D++V G++ LRV+DGSTF  +P ++PQ   +MLGRY+G++I
Sbjct: 454 VASYWHYHGGCLVGKVLDGDFRVTGINALRVVDGSTFPYTPASHPQGFYLMLGRYVGIKI 513
Query: 562 LQDR 565
           LQ+R
Sbjct: 514 LQER 517

>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus Eryingii Length = 566

Iteration: 1
 Score =  109 bits (272), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 139/599 (23%), Positives = 243/599 (40%), Gaps = 110/599 (18%)
Query: 42  YDYIIVGGGTSGCPLAATLSQN--ATVLLLEKGGSP-----YENPNITDTGNFATTLLDP 94
           +DY++VG G +G  +AA L+++   +VL+LE G S       E P +   G    ++ D 
Sbjct: 3   FDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAP-LLAPGLVPNSIFDW 61
Query: 95  SPTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRASL----RYVR---EVGWTESLVN 147
           + T+ +Q   +   +   R R+LGG S ++     R S     RY     + GW    + 
Sbjct: 62  NYTTTAQAGYNGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNWDNIQ 121
Query: 148 SSYEWVEKKVAHEPP------------------------MLQWQSAVRDGLLEAGVLPYN 183
              ++V K     PP                        +  + + + D +L        
Sbjct: 122 ---QFVRKNEMVVPPADNHNTSGEFIPAVHGTNGSVSISLPGFPTPLDDRVLATTQEQSE 178
Query: 184 GFTFDHIYGTK----VSGTIFD-EDGHRHSAADLLEYADPEK----LTVYLRAVVQRIKF 234
            F F+   GT     +S +I    +G R S++    Y  P +    L+V + A V ++  
Sbjct: 179 EFFFNPDMGTGHPLGISWSIASVGNGQRSSSS--TAYLRPAQSRPNLSVLINAQVTKLVN 236
Query: 235 TETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELR 294
           + T    P   CV + +  GA          K E++LSAG++G+P LL LSG+G  N+L 
Sbjct: 237 SGTTNGLPAFRCVEYAEQEGAPTTTVC---AKKEVVLSAGSVGTPILLQLSGIGDENDLS 293
Query: 295 KRGIRVVVDQPNVGQGMSDNPMNALFVPSARPVEVSLVQVVGITRFDSYIETASGLSL-A 353
             GI  +V+ P+VG+ +SD+    L +P+A  V  +         FD+    +S  ++  
Sbjct: 294 SVGIDTIVNNPSVGRNLSDH----LLLPAAFFVNSN-------QTFDNIFRDSSEFNVDL 342
Query: 354 PSWAQGLTRDYSSFL-----------NKTDIPSLVTPETVAEAVETVNSYLNGTIRAGV- 401
             W    T   ++ +           N +   +   P     +      + N      + 
Sbjct: 343 DQWTNTRTGPLTALIANHLAWLRLPSNSSIFQTFPDPAAGPNSAHWETIFSNQWFHPAIP 402
Query: 402 ---------IVEKIMGPRSTGHLRLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDV 452
                    +   ++ P + G ++L T +  D P +   Y     D+   +Q +++ +  
Sbjct: 403 RPDTGSFMSVTNALISPVARGDIKLATSNPFDKPLINPQYLSTEFDIFTMIQAVKSNLRF 462
Query: 453 LNSRALSKFRYPDVSVQELIDLMVNIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGC 512
           L+ +A + F      V    D  +  PT+           ++E + RD   TI+H  G  
Sbjct: 463 LSGQAWADF------VIRPFDPRLRDPTD---------DAAIESYIRDNANTIFHPVGTA 507
Query: 513 QVDR------VVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLGRYMGLRILQDR 565
            +        VVD D KV GVDGLR++DGS    +P  + Q    ++G+     I  D+
Sbjct: 508 SMSPRGASWGVVDPDLKVKGVDGLRIVDGSILPFAPNAHTQGPIYLVGKQGADLIKADQ 566

>pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant Length = 546

Iteration: 1
 Score =  100 bits (249), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 130/298 (43%), Gaps = 47/298 (15%)
Query: 265 GKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMNALFVPSA 324
            +NE++LS GAI +P+LLMLSG+GPA  L + GI V+VD P VG+ + D+P   +   + 
Sbjct: 261 ARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHPEGVVQFEAK 320
Query: 325 RPVEVSLVQVVGITRFDSYIETASGLSLAPSWAQGLTRDYSSFLNKTDIPSLVTPETVAE 384
           +P+     Q                      W  G+       L++ D+  ++   +V  
Sbjct: 321 QPMVAESTQW---------------------WEIGIFTPTEDGLDRPDL--MMHYGSVPF 357
Query: 385 AVETVNSYLNGTIRAGVIVEKIMGPRSTGHLRLRTLDADDNPSVTFNYFQEPE--DLVRC 442
            + T+      T     +   +   RS G +RLR+ D  D P V   YF +PE  D+   
Sbjct: 358 DMNTLRHGYPTTENGFSLTPNVTHARSRGTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVM 417
Query: 443 VQGMRTIIDVLNSRALSKFRYPDVSVQELIDLMVNIPTNLRPRHVVGASISLEQFCRDTV 502
           V G+R   ++    A++++   ++S                P         L+ + R T 
Sbjct: 418 VAGIRKAREIAAQPAMAEWTGRELS----------------PGVEAQTDEELQDYIRKTH 461
Query: 503 MTIWHYHGGCQVDRV------VDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLG 554
            T++H  G  ++  V      +D + +V GV GLRV D S        NP  T MM+G
Sbjct: 462 NTVYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNITVMMIG 519

>pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into The Catalytic Mechanism Length = 546

Iteration: 1
 Score =  100 bits (248), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 130/298 (43%), Gaps = 47/298 (15%)
Query: 265 GKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMNALFVPSA 324
            +NE++LS GAI +P+LLMLSG+GPA  L + GI V+VD P VG+ + D+P   +   + 
Sbjct: 261 ARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHPEGVVQFEAK 320
Query: 325 RPVEVSLVQVVGITRFDSYIETASGLSLAPSWAQGLTRDYSSFLNKTDIPSLVTPETVAE 384
           +P+     Q                      W  G+       L++ D+  ++   +V  
Sbjct: 321 QPMVAESTQW---------------------WEIGIFTPTEDGLDRPDL--MMHYGSVPF 357
Query: 385 AVETVNSYLNGTIRAGVIVEKIMGPRSTGHLRLRTLDADDNPSVTFNYFQEPE--DLVRC 442
            + T+      T     +   +   RS G +RLR+ D  D P V   YF +PE  D+   
Sbjct: 358 DMNTLRHGYPTTENGFSLTPNVTHARSRGTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVM 417
Query: 443 VQGMRTIIDVLNSRALSKFRYPDVSVQELIDLMVNIPTNLRPRHVVGASISLEQFCRDTV 502
           V G+R   ++    A++++   ++S                P         L+ + R T 
Sbjct: 418 VAGIRKAREIAAQPAMAEWTGRELS----------------PGVEAQTDEELQDYIRKTH 461
Query: 503 MTIWHYHGGCQVDRV------VDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLG 554
            T++H  G  ++  V      +D + +V GV GLRV D S        NP  T MM+G
Sbjct: 462 NTVYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNITVMMIG 519

>pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant Length = 546

Iteration: 1
 Score = 99.0 bits (245), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 129/298 (43%), Gaps = 47/298 (15%)
Query: 265 GKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMNALFVPSA 324
            +NE++LS GAI +P+LLMLSG+GPA  L + GI V+VD P VG+ + D+P   +   + 
Sbjct: 261 ARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHPEGVVQFEAK 320
Query: 325 RPVEVSLVQVVGITRFDSYIETASGLSLAPSWAQGLTRDYSSFLNKTDIPSLVTPETVAE 384
           +P+     Q                      W  G+       L++ D+  ++   +V  
Sbjct: 321 QPMVAESTQW---------------------WEIGIFTPTEDGLDRPDL--MMHYGSVPF 357
Query: 385 AVETVNSYLNGTIRAGVIVEKIMGPRSTGHLRLRTLDADDNPSVTFNYFQEPE--DLVRC 442
            + T+      T     +   +   RS G +RLR+ D  D P V   YF +PE  D+   
Sbjct: 358 DMNTLRHGYPTTENGFSLTPNVTHARSRGTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVM 417
Query: 443 VQGMRTIIDVLNSRALSKFRYPDVSVQELIDLMVNIPTNLRPRHVVGASISLEQFCRDTV 502
           V G+R   ++    A++++   ++S                P         L+ + R T 
Sbjct: 418 VAGIRKAREIAAQPAMAEWTGRELS----------------PGVEAQTDEELQDYIRKTH 461
Query: 503 MTIWHYHGGCQVDRV------VDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLG 554
            T +H  G  ++  V      +D + +V GV GLRV D S        NP  T MM+G
Sbjct: 462 NTAYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNITVMMIG 519

>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase Length = 577

Iteration: 1
 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 142/600 (23%), Positives = 229/600 (38%), Gaps = 125/600 (20%)
Query: 40  SYYDYIIVGGGTSGCPLAATLSQN--ATVLLLEKG-GSPYENPNITDTGNFATTLLDPSP 96
           S++D++IVGGGT+G  +A  L++N   TVL++E G G+P + P IT T + A  L +   
Sbjct: 5   SHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEIT-TPSSAMDLRNSKY 63
Query: 97  TSPSQQFISEDGVY------NARARVLGGGSVINAGFYT-----RASLRYVREVGWTESL 145
               +  +     Y      N R + LGG S +N  ++T     +A+     E G  E  
Sbjct: 64  DWAYKTTMVRRDDYERIEKPNTRGKTLGGSSSLN--YFTWVPGHKATFDQWEEFGGKEWT 121
Query: 146 VNSSYEWVEKKVA-HEPPMLQWQSAVRDGLLEAGVLPY-NGFTFDHI------------- 190
            +    ++ K    H+ P L   S   + +   G +P  +    D +             
Sbjct: 122 WDPLVPYLRKSATYHDDPRLY--SPELEKIGGGGPIPISHAELIDEMAPFRENLTKAWKS 179
Query: 191 YGTKVSGTIFD--EDGHRHS---------AADLLEYADPEKLTVYLRAVVQRIKFTETGR 239
            G  +   I+D   DG  H          +   L   +   +T+      +R+   E  R
Sbjct: 180 MGQPLIENIYDGEMDGLTHCCDTIYRGQRSGSFLFVKNKPNITIVPEVHSKRLIINEADR 239
Query: 240 AKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIR 299
              T   VT     G      LN     E+ILS G   +P+LLMLSG+GP  EL + GI 
Sbjct: 240 ---TCKGVTVVTAAGNE----LNFFADREVILSQGVFETPKLLMLSGIGPTRELSRHGIN 292
Query: 300 VVVDQPNVGQGMSDNP----------------------------MNALFVPSARPVEVSL 331
            +VD  +VGQ + D+P                            ++A     + PV   L
Sbjct: 293 TIVDSRHVGQNLMDHPGVPFVLRVKDGFGMDDVLLRHGPKRDAVVSAYNKNRSGPVGSGL 352
Query: 332 VQVVGITRFDSYIETASGLSLAPSWAQGLTRDYSSFLNKTDIPSLVTPETVAEAV---ET 388
           +++VG  R D Y+E  +    A +   G          K     L  P    + V    T
Sbjct: 353 LELVGFPRIDKYLEKDAEYRKAKAANGG----------KDPFSPLGQPHFELDFVCMFGT 402
Query: 389 VNSYLNGTIRAG----VIVEKIMGPRSTGHLRLRTLDADDNPSVTFNYFQEPEDLVRCVQ 444
              +   T + G    V+V+ +      G + L + D    P++  N+F    D++   +
Sbjct: 403 AFQWHFPTPKTGDHLTVVVDLVRPISDPGEVTLNSADPFQQPNINLNFFANDLDIIAMRE 462
Query: 445 GMRTIIDVLNS----RALSKFRYPDVSVQELIDLMVNIPTNLRPRHVVGASISLEQFCRD 500
           G+R   D+L      + L +  YP             +P +        +   + +   D
Sbjct: 463 GIRFSYDLLFKGEGFKDLVESEYP-----------WEMPLD--------SDKEMHRAVLD 503
Query: 501 TVMTIWHYHGGCQVDR-----VVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLGR 555
              T +H  G  ++ +     VVD   KV G+  LRV D S     P    Q +   +G 
Sbjct: 504 RCQTAFHPTGTARLSKNIDQGVVDPKLKVHGIKKLRVADASVIPIIPDCRIQNSVYAVGE 563

>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium Loti Length = 526

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 130/539 (24%), Positives = 223/539 (41%), Gaps = 99/539 (18%)
Query: 43  DYIIVGGGTSGCPLAATLSQN--ATVLLLEKGGSPYENPNITDTGNFATTL---LDPSPT 97
           D +IVGGG++G  LAA LS++  + VLL+E G  P  +P+I +   +        D    
Sbjct: 19  DIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPT-DPDIWNPAAWPALQGRSYDWDYR 77
Query: 98  SPSQQFISEDGVYNARARVLGGGSVINAGFYTRASLRYVREVGWTESLVNSSYEWVEK-- 155
           + +Q   +    + AR R++GG S ++A  Y R      +   W ++  +  + W E   
Sbjct: 78  TEAQAGTAGRAHHWARGRLIGGSSCLHAMGYMRGHPSDFQ--AWVDASGDRRWGWDELLP 135
Query: 156 --KVAHEPPMLQWQ-----------------SAVRDGLLEAGV---LP-YNGFTFDHIYG 192
             +   + P+                     S +    +EAG    LP   G     + G
Sbjct: 136 VFQAIEDHPLGGDGIHGKGGPLPIHLPADEVSPLARAFIEAGASLGLPRLEGHNSGEMIG 195
Query: 193 TKVSGTIFDEDGHRHSAAD--LLEYADPEK-LTVYLRAVVQRIKFTETGRAKPTAHCVTF 249
                ++   DG R +AAD  L +     K LT+   + V+R+K           + V  
Sbjct: 196 V-TPNSLNIRDGRRVTAADAWLTKAVRGRKNLTILTGSRVRRLKLE--------GNQVRS 246
Query: 250 YDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQ 309
            + VG +  A +     ++I+L AGA+ SP LLM SG+GP + L   G+  ++D P++G+
Sbjct: 247 LEVVGRQGSAEVF---ADQIVLCAGALESPALLMRSGIGPHDVLDAAGVGCLIDMPDIGR 303
Query: 310 GMSDNPMNALFVPSAR-PVEVSLVQ---VVGITRFDSYIETASGLSLAPSWAQGLTRDYS 365
            + D+ + A  + +AR PV  S +Q    +   R DS+  TA+G                
Sbjct: 304 NLQDHLLGAGNLYAARKPVPPSRLQHSESMAYMRADSF--TAAG--------------QP 347
Query: 366 SFLNKTDIPSLVTPETVAEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHLRLRTLDADDN 425
             +    +  +V+    A A  +  S L G          I  P S G +R+   +  D 
Sbjct: 348 EIVVGCGVAPIVSESFPAPAAGSAYSLLFG----------ITHPTSRGSVRISGPELGDR 397
Query: 426 PSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLMVNIPTNLRPR 485
             +   Y Q   D  R  + +     + +   L+ +R      +EL+    N        
Sbjct: 398 LIIDPAYLQTGRDRERFRRALEASRTIGHRDELAGWRE-----RELLPGTPN-------- 444
Query: 486 HVVGASISLEQFCRDTVMTIWHYHGGCQV----DRVVDRDYKVLGVDGLRVIDGSTFYN 540
               ++  ++ F   +V+T  H  G C++    D VVD + ++  +D L V+D S   N
Sbjct: 445 ----SAAEMDDFIARSVITHHHPCGTCRMGKDPDAVVDANLRLKALDNLFVVDASIMPN 499

>pdb|1CF3|A Chain A, Glucose Oxidase From Apergillus Niger Length = 583

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 142/599 (23%), Positives = 212/599 (35%), Gaps = 128/599 (21%)
Query: 43  DYIIVGGGTSGCPLAATLSQNA--TVLLLEKGGSPYEN---PNITDTGNFATTLLDPSPT 97
           DYII GGG +G   AA L++N   +VL++E G   YE+   P I D   +     D   +
Sbjct: 21  DYIIAGGGLTGLTTAARLTENPNISVLVIESG--SYESDRGPIIEDLNAYG----DIFGS 74
Query: 98  SPSQQFISEDGVYNARARV------LGGGSVINAGFYTRASLRYVREVGWTESLVNSSYE 151
           S    + + +   N +  +      LGG +++N G +TR     V    W     N  + 
Sbjct: 75  SVDHAYETVELATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDS--WETVFGNEGWN 132
Query: 152 W-------VEKKVAHEPPMLQWQS-------------------------------AVRDG 173
           W       ++ + A  P   Q  +                               A+   
Sbjct: 133 WDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPIVKALMSA 192
Query: 174 LLEAGVLPYNGFTFDHIYGTKVSGTIFDEDGHRHSAAD---LLEYADPEKLTVYLRAVVQ 230
           + + GV     F     +G  +      ED  R  AA    L  Y  P  L V     V 
Sbjct: 193 VEDRGVPTKKDFGCGDPHGVSMFPNTLHEDQVRSDAAREWLLPNYQRP-NLQVLTGQYVG 251
Query: 231 RIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPA 290
           ++  ++ G   P A  V F  H G  H    N   K+E++L+AG+  SP +L  SG+G  
Sbjct: 252 KVLLSQNG-TTPRAVGVEFGTHKGNTH----NVYAKHEVLLAAGSAVSPTILEYSGIGMK 306
Query: 291 NELRKRGIRVVVDQPNVGQGMSDNPMNALFVPSARPVEVSLVQVVGITRFDSYIETASGL 350
           + L   GI  VVD P VG  + D                   Q     R  S I +A   
Sbjct: 307 SILEPLGIDTVVDLP-VGLNLQD-------------------QTTATVR--SRITSAGAG 344
Query: 351 SLAPSWAQGLTRDYSSFLNKTDIPSLVTPETVAEAVETVNSYLNGTIRAGVIVEKIMGPR 410
               +W       +  +  K         E  AE       + N T    +  E      
Sbjct: 345 QGQAAWFATFNETFGDYSEKAHELLNTKLEQWAEEAVARGGFHNTTALL-IQYENYRDWI 403
Query: 411 STGHLRLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRY-PDVSVQ 469
              ++    L  D     +F+ +    DL+   +G   I+D      L  F Y P   + 
Sbjct: 404 VNHNVAYSELFLDTAGVASFDVW----DLLPFTRGYVHILD--KDPYLHHFAYDPQYFLN 457
Query: 470 ELIDLMVNIPTNLRPRHV----------VGASISLEQFCRDTVMTIW----------HYH 509
           EL DL+         R++           G +I  +    D  ++ W          +YH
Sbjct: 458 EL-DLLGQAAATQLARNISNSGAMQTYFAGETIPGDNLAYDADLSAWTEYIPYHFRPNYH 516
Query: 510 --GGC-----QVDRVVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLGRYMGLRI 561
             G C     ++  VVD   +V GV GLRVIDGS     P T   +  M +   M L+I
Sbjct: 517 GVGTCSMMPKEMGGVVDNAARVYGVQGLRVIDGSI----PPTQMSSHVMTVFYAMALKI 571

>pdb|1NAA|A Chain A, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex With Cellobionolactam Length = 541

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 135/567 (23%), Positives = 202/567 (35%), Gaps = 80/567 (14%)
Query: 42  YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYENPNITDTGNFATT---------- 90
           YDYIIVG G  G   A  LS+    VLLLE+GG   +    T    +AT+          
Sbjct: 3   YDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPG 62
Query: 91  LLDPSPTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRASLRYVREVGWTESLVNSSY 150
           L +   T  +  +  +D    A   V GG SV  A ++      +   VGW  S  N  +
Sbjct: 63  LFESLFTDSNPFWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFSSSVGWPSSWTN--H 120
Query: 151 EWVEKKVAHEPPMLQWQSAVRDGLLEAGVLPYNGFTFDHIYGTKVSGTIFDEDGHR---- 206
                K++   P     S      LE      +       Y      TI D   ++    
Sbjct: 121 APYTSKLSSRLPSTDHPSTDGQRYLEQSFNVVSQLLKGQGYN---QATINDNPNYKDHVF 177
Query: 207 -HSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGAR-HRACLNNG 264
            +SA D L       +  YL+  + R  FT       +         +G + +   L   
Sbjct: 178 GYSAFDFLNGKRAGPVATYLQTALARPNFTFKTNVMVSNVVRNGSQILGVQTNDPTLGPN 237
Query: 265 G------KNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPN------------ 306
           G      K  +ILSAGA G+ ++L  SG+GP +      I+ V   P             
Sbjct: 238 GFIPVTPKGRVILSAGAFGTSRILFQSGIGPTDM-----IQTVQSNPTAAAALPPQNQWI 292
Query: 307 ---VGQGMSDNP-MNALFVPSARPVEVSLVQVVGITR---FDSYIETASGLSLAPSWAQG 359
              VG    DNP +N +F   +     +   V    R      Y+   SG+    S    
Sbjct: 293 NLPVGMNAQDNPSINLVFTHPSIDAYENWADVWSNPRPADAAQYLANQSGVFAGASPKLN 352
Query: 360 LTRDYSSFLNKTDIPSLVTPETVAEAVETVNSYL--NGTIRAGVIVEKIMGPRSTGHLRL 417
             R YS     +D  +     TV     +VNS L  N +    + V    G +S G + +
Sbjct: 353 FWRAYSG----SDGFTRYAQGTVRPGAASVNSSLPYNASQIFTITVYLSTGIQSRGRIGI 408
Query: 418 RTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDV--SVQELIDLM 475
               A     +T  +   P D    +Q +  ++  + S        PDV  +++E +D  
Sbjct: 409 DA--ALRGTVLTPPWLVNPVDKTVLLQALHDVVSNIGSIPGLTMITPDVTQTLEEYVDAY 466
Query: 476 VNIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVDRVVDRDYKVLGVDGLRVIDG 535
              P  +   H V ++            TI    G      VVD + KV G + L ++D 
Sbjct: 467 --DPATMNSNHWVSST------------TI----GSSPQSAVVDSNVKVFGTNNLFIVDA 508
Query: 536 STFYNSPGTNPQATCMMLGRYMGLRIL 562
               + P  NPQ T M        +IL
Sbjct: 509 GIIPHLPTGNPQGTLMSAAEQAAAKIL 535

>pdb|1KDG|A Chain A, Crystal Structure Of The Flavin Domain Of Cellobiose Dehydrogenase Length = 546

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 135/567 (23%), Positives = 202/567 (35%), Gaps = 80/567 (14%)
Query: 42  YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYENPNITDTGNFATT---------- 90
           YDYIIVG G  G   A  LS+    VLLLE+GG   +    T    +AT+          
Sbjct: 8   YDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPG 67
Query: 91  LLDPSPTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRASLRYVREVGWTESLVNSSY 150
           L +   T  +  +  +D    A   V GG SV  A ++      +   VGW  S  N  +
Sbjct: 68  LFESLFTDSNPFWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFSSSVGWPSSWTN--H 125
Query: 151 EWVEKKVAHEPPMLQWQSAVRDGLLEAGVLPYNGFTFDHIYGTKVSGTIFDEDGHR---- 206
                K++   P     S      LE      +       Y      TI D   ++    
Sbjct: 126 APYTSKLSSRLPSTDHPSTDGQRYLEQSFNVVSQLLKGQGYN---QATINDNPNYKDHVF 182
Query: 207 -HSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGAR-HRACLNNG 264
            +SA D L       +  YL+  + R  FT       +         +G + +   L   
Sbjct: 183 GYSAFDFLNGKRAGPVATYLQTALARPNFTFKTNVMVSNVVRNGSQILGVQTNDPTLGPN 242
Query: 265 G------KNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPN------------ 306
           G      K  +ILSAGA G+ ++L  SG+GP +      I+ V   P             
Sbjct: 243 GFIPVTPKGRVILSAGAFGTSRILFQSGIGPTDM-----IQTVQSNPTAAAALPPQNQWI 297
Query: 307 ---VGQGMSDNP-MNALFVPSARPVEVSLVQVVGITR---FDSYIETASGLSLAPSWAQG 359
              VG    DNP +N +F   +     +   V    R      Y+   SG+    S    
Sbjct: 298 NLPVGMNAQDNPSINLVFTHPSIDAYENWADVWSNPRPADAAQYLANQSGVFAGASPKLN 357
Query: 360 LTRDYSSFLNKTDIPSLVTPETVAEAVETVNSYL--NGTIRAGVIVEKIMGPRSTGHLRL 417
             R YS     +D  +     TV     +VNS L  N +    + V    G +S G + +
Sbjct: 358 FWRAYSG----SDGFTRYAQGTVRPGAASVNSSLPYNASQIFTITVYLSTGIQSRGRIGI 413
Query: 418 RTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDV--SVQELIDLM 475
               A     +T  +   P D    +Q +  ++  + S        PDV  +++E +D  
Sbjct: 414 DA--ALRGTVLTPPWLVNPVDKTVLLQALHDVVSNIGSIPGLTMITPDVTQTLEEYVDAY 471
Query: 476 VNIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVDRVVDRDYKVLGVDGLRVIDG 535
              P  +   H V ++            TI    G      VVD + KV G + L ++D 
Sbjct: 472 --DPATMNSNHWVSST------------TI----GSSPQSAVVDSNVKVFGTNNLFIVDA 513
Query: 536 STFYNSPGTNPQATCMMLGRYMGLRIL 562
               + P  NPQ T M        +IL
Sbjct: 514 GIIPHLPTGNPQGTLMSAAEQAAAKIL 540

>pdb|1GPE|A Chain A, Glucose Oxidase From Penicillium Amagasakiense Length = 587

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 130/321 (40%), Gaps = 62/321 (19%)
Query: 42  YDYIIVGGGTSGCPLAATLSQNA--TVLLLEKG------GSPYENPNITDTGNFATTLLD 93
           YDYII GGG +G  +AA L++N    VL++EKG      G+  E+PN      F TT+  
Sbjct: 25  YDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQ-IFGTTVDQ 83
Query: 94  PSPTSPSQQFISEDGVYNARA-RVLGGGSVINAGFYTRASLRYVREVGWTESLVNSSYEW 152
              T P    +  +   N +A + LGG ++IN   +TR     V+   W +      + W
Sbjct: 84  NYLTVP----LINNRTNNIKAGKGLGGSTLINGDSWTRPD--KVQIDSWEKVFGMEGWNW 137
Query: 153 -------VEKKVAHEPPMLQW-----------------QSAVRDG------LLEA----- 177
                   + + A  P   Q                  QS  RD       +++A     
Sbjct: 138 DNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTVQSGARDNGQPWSPIMKALMNTV 197
Query: 178 ---GVLPYNGFTFDHIYGTKVSGTIFDEDGHRHSAAD--LLEYADPEKLTVYLRAVVQRI 232
              GV     F   H  G  +     DE+  R  AA   LL       L +    +V ++
Sbjct: 198 SALGVPVQQDFLCGHPRGVSMIMNNLDENQVRVDAARAWLLPNYQRSNLEILTGQMVGKV 257
Query: 233 KFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANE 292
            F +T    P A  V F    G       +   K+E++L+AG+  SP +L  SG+G  + 
Sbjct: 258 LFKQTASG-PQAVGVNF----GTNKAVNFDVFAKHEVLLAAGSAISPLILEYSGIGLKSV 312
Query: 293 LRKRGIRVVVDQPNVGQGMSD 313
           L +  +  ++D P VG  M D
Sbjct: 313 LDQANVTQLLDLP-VGINMQD 332

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	570
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	0.0
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	5e-72
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	2e-70
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	7e-68
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	3e-64
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	3e-63
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	5e-62
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	1e-39
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	6e-19
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	5e-21
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	9e-16
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	4e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
3atr_A	453	Conserved archaeal protein; saturating double bond	2e-04
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	2e-04
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	3e-04
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	6e-04
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	7e-04

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A* Length = 536

 Score =  546 bits (1410), Expect = 0.0
 Identities = 207/553 (37%), Positives = 298/553 (53%), Gaps = 41/553 (7%)

Query: 17  GFCFAEKAPYYTFVKDATSAPLISYYDYIIVGGGTSGCPLAATLSQNATVLLLEKGGSPY 76
                    Y +F  DAT   L   YDY+IVGGGTSGCPLAATLS+   VL+LE+G  P 
Sbjct: 2   ATTSDHDFSYLSFAYDATDLELEGSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSLPT 61

Query: 77  ENPNITDTGNFATTLL-DPSPTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRASLRY 135
             PN+     F   L  +    +P ++F+SEDG+ N R RVLGG S+INAG Y RA+   
Sbjct: 62  AYPNVLTADGFVYNLQQEDDGKTPVERFVSEDGIDNVRGRVLGGTSIINAGVYARANTSI 121

Query: 136 VRE--VGWTESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLLEAGVLPYNGFTFDHIYGT 193
                V W   LVN +YEWVE  + ++P    WQS  +   LEAGV P +GF+ DH  GT
Sbjct: 122 YSASGVDWDMDLVNQTYEWVEDTIVYKPNSQSWQSVTKTAFLEAGVHPNHGFSLDHEEGT 181

Query: 194 KVSGTIFDEDGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHV 253
           +++G+ FD  G RH+A +LL   +   L V + A V++I F+       TA  V + D  
Sbjct: 182 RITGSTFDNKGTRHAADELLNKGNSNNLRVGVHASVEKIIFSN--APGLTATGVIYRDSN 239

Query: 254 GARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSD 313
           G  H+A + + G  E+I+SAG IG+PQLL+LSGVGP + L    I VV+  P VGQ + D
Sbjct: 240 GTPHQAFVRSKG--EVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHD 297

Query: 314 NPMNALFVPSARPVEVSLVQVVGITRFDSYIETASGLSLAPSWAQGLTRDYSSFLNKTDI 373
           NP N + +    P+E ++V V+GI+    + + +   SL  +           F   +  
Sbjct: 298 NPRNFINILPPNPIEPTIVTVLGISND--FYQCSFS-SLPFTTPPF------GFFPSSSY 348

Query: 374 PSLVTPETVAEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHLRLRT-LDADDNPSVTFNY 432
           P                              K+ GP S G L L++  +   +P+V FNY
Sbjct: 349 P-------------------LPNSTFAHFASKVAGPLSYGSLTLKSSSNVRVSPNVKFNY 389

Query: 433 FQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLMVNIPTNLRPRHVVGASI 492
           +    DL  CV GM+ I ++L++ AL  ++  D+   E  +        +          
Sbjct: 390 YSNLTDLSHCVSGMKKIGELLSTDALKPYKVEDLPGVEGFN-----ILGIPLPKDQTDDA 444

Query: 493 SLEQFCRDTVMTIWHYHGGCQVDRVVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMM 552
           + E FCR++V + WHYHGGC V +V+D D++V G++ LRV+DGSTF  +P ++PQ   +M
Sbjct: 445 AFETFCRESVASYWHYHGGCLVGKVLDGDFRVTGINALRVVDGSTFPYTPASHPQGFYLM 504

Query: 553 LGRYMGLRILQDR 565
           LGRY+G++ILQ+R
Sbjct: 505 LGRYVGIKILQER 517

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1 Length = 587

 Score =  240 bits (615), Expect = 5e-72
 Identities = 112/593 (18%), Positives = 191/593 (32%), Gaps = 125/593 (21%)

Query: 42  YDYIIVGGGTSGCPLAATLSQNA--TVLLLEKGGSPYENPNITDTGNFATTLLDPSPTSP 99
           YDYII GGG +G  +AA L++N    VL++EKG     +  I +  N    +     T+ 
Sbjct: 25  YDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFG---TTV 81

Query: 100 SQQFISEDGVYN-----ARARVLGGGSVINAGFYTRASLRYVRE-----------VGWT- 142
            Q +++   + N        + LGG ++IN   +TR      +             GW  
Sbjct: 82  DQNYLTVPLINNRTNNIKAGKGLGGSTLINGDSWTRPD----KVQIDSWEKVFGMEGWNW 137

Query: 143 ----------ESLVNSSYEWVEKKVAHEPPM--------------LQWQSAVRDGLLEAG 178
                     E+    +   +    +                    Q  S +   L+   
Sbjct: 138 DNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTVQSGARDNGQPWSPIMKALMNTV 197

Query: 179 V---LPYN---------GFTFDHIYGTKVSGTIFDEDGHRHSAADLLEYADPEK----LT 222
               +P           G +            + DE+  R  AA    +  P      L 
Sbjct: 198 SALGVPVQQDFLCGHPRGVSMIM-------NNL-DENQVRVDAAR--AWLLPNYQRSNLE 247

Query: 223 VYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLL 282
           +    +V ++ F +   + P A  V F  +             K+E++L+AG+  SP +L
Sbjct: 248 ILTGQMVGKVLF-KQTASGPQAVGVNFGTNKAVNFDV----FAKHEVLLAAGSAISPLIL 302

Query: 283 MLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMNAL--FVPSARPVEVSLVQVVGITR- 339
             SG+G  + L +  +  ++D P VG  M D     +     SA   +   V     T  
Sbjct: 303 EYSGIGLKSVLDQANVTQLLDLP-VGINMQDQTTTTVSSRASSAGAGQGQAVFFANFTET 361

Query: 340 FDSYIETASG-LSLAPSWAQGLTRDYSSFLNKT-------DIPSLVTPETVAEAVETVNS 391
           F  Y   A   L+         T     F N T       +  + +  E VA A   +++
Sbjct: 362 FGDYAPQARDLLNTKLDQWAEETVARGGFHNVTALKVQYENYRNWLLDEDVAFAELFMDT 421

Query: 392 YLNGTIRAGVIVEKIMGPRSTGHLRLRTLDADDNPSVT-FNYFQEPEDLVRCVQGMRTII 450
                          + P + G + + + D           +F    DL+      +   
Sbjct: 422 EGKINFDLWD-----LIPFTRGSVHILSSDPYLWQFANDPKFFLNEFDLLGQAAASKLAR 476

Query: 451 DVLNSRALSKFR----YPDVSVQELIDLMVNIPTNLRPRHVVGASISLEQFCRDTVMTIW 506
           D+ +  A+ ++      P  ++ +   L                      +        W
Sbjct: 477 DLTSQGAMKEYFAGETLPGYNLVQNATLS-----------------QWSDYVLQNFRPNW 519

Query: 507 HYHGGC---QVDR--VVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLG 554
           H    C     +   VVD   KV G  GLRVIDGS       ++       + 
Sbjct: 520 HAVSSCSMMSRELGGVVDATAKVYGTQGLRVIDGSIPPTQVSSHVMTIFYGMA 572

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A* Length = 583

 Score =  236 bits (604), Expect = 2e-70
 Identities = 112/594 (18%), Positives = 191/594 (32%), Gaps = 126/594 (21%)

Query: 42  YDYIIVGGGTSGCPLAATLSQNA--TVLLLEKGGSPYENPNITDTGNFATTLLDPSP--- 96
            DYII GGG +G   AA L++N   +VL++E G    +   I +  N    +   S    
Sbjct: 20  VDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDHA 79

Query: 97  -TSPSQQFISEDGVYNARARVLGGGSVINAGFYTRASLRYVRE-----------VGWT-- 142
             +  +   +           LGG +++N G +TR      +             GW   
Sbjct: 80  YETV-ELATNNQTALIRSGNGLGGSTLVNGGTWTRPH----KAQVDSWETVFGNEGWNWD 134

Query: 143 ---------ESLVNSSYEWVEKKVAHEPPM--------------LQWQSAVRDGLLEAGV 179
                    E     + + +                            S +   L+ A  
Sbjct: 135 NVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPIVKALMSAVE 194

Query: 180 ---LPYN---------GFTFDHIYGTKVSGTIFDEDGHRHSAADLLEYADPEK----LTV 223
              +P           G +           T+  ED  R  AA   E+  P      L V
Sbjct: 195 DRGVPTKKDFGCGDPHGVSMFP-------NTL-HEDQVRSDAAR--EWLLPNYQRPNLQV 244

Query: 224 YLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARH--RACLNNGGKNEIILSAGAIGSPQL 281
                V ++         P A  V F  H G  H   A      K+E++L+AG+  SP +
Sbjct: 245 LTGQYVGKVLL-SQNGTTPRAVGVEFGTHKGNTHNVYA------KHEVLLAAGSAVSPTI 297

Query: 282 LMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPM--------NALFVPSARPVEVSLVQ 333
           L  SG+G  + L   GI  VVD P VG  + D           +A           +  +
Sbjct: 298 LEYSGIGMKSILEPLGIDTVVDLP-VGLNLQDQTTATVRSRITSAGAGQGQAAWFATFNE 356

Query: 334 VVG--ITRFDSYIETASGLSLAPSWAQGLTRDYSSFLNKTDI-PSLVTPETVAEAVETVN 390
             G    +    + T        + A+G   + ++ L + +     +    VA +   ++
Sbjct: 357 TFGDYSEKAHELLNTKLEQWAEEAVARGGFHNTTALLIQYENYRDWIVNHNVAYSELFLD 416

Query: 391 SYLNGTIRAGVIVEKIMGPRSTGHLRLRTLD-ADDNPSVTFNYFQEPEDLVRCVQGMRTI 449
           +    +          + P + G++ +   D    + +    YF    DL+      +  
Sbjct: 417 TAGVASFDVWD-----LLPFTRGYVHILDKDPYLHHFAYDPQYFLNELDLLGQAAATQLA 471

Query: 450 IDVLNSRALSKFR----YPDVSVQELIDLMVNIPTNLRPRHVVGASISLEQFCRDTVMTI 505
            ++ NS A+  +      P  ++    DL                  +  ++        
Sbjct: 472 RNISNSGAMQTYFAGETIPGDNLAYDADLS-----------------AWTEYIPYHFRPN 514

Query: 506 WHYHGGC---QVDR--VVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLG 554
           +H  G C     +   VVD   +V GV GLRVIDGS       ++       + 
Sbjct: 515 YHGVGTCSMMPKEMGGVVDNAARVYGVQGLRVIDGSIPPTQMSSHVMTVFYAMA 568

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} Length = 566

 Score =  228 bits (585), Expect = 7e-68
 Identities = 119/592 (20%), Positives = 214/592 (36%), Gaps = 118/592 (19%)

Query: 42  YDYIIVGGGTSGCPLAATLSQNA--TVLLLEKGGSPYENPNITDTGNFATTLLDPS---- 95
           +DY++VG G +G  +AA L+++   +VL+LE G S                + +      
Sbjct: 3   FDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDWN 62

Query: 96  -PTSPSQQFISEDG--VYNARARVLGGGSVINAGFYTR---------ASLRYVREVGW-- 141
             T+    +   +G  +   R R+LGG S ++     R         A++    + GW  
Sbjct: 63  YTTTAQAGY---NGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVT--GDEGWNW 117

Query: 142 ---------TESLVNSSYEWVEKKVAHEP------PM----LQWQSAVRDGLLEAGV--- 179
                     E +V  +                   +      + + + D +L       
Sbjct: 118 DNIQQFVRKNEMVVPPADNHNTSGEFIPAVHGTNGSVSISLPGFPTPLDDRVLATTQEQS 177

Query: 180 --LPYN---------GFTFDHIYGTKVSGTIFDEDGHRHSAADLLEYADPEK----LTVY 224
               +N         G ++          ++ +  G R S++    Y  P +    L+V 
Sbjct: 178 EEFFFNPDMGTGHPLGISWSI-------ASVGN--GQRSSSST--AYLRPAQSRPNLSVL 226

Query: 225 LRAVVQRIKFTETGRAKPTAHCVTF-YDHVGARHRACLNNGGKNEIILSAGAIGSPQLLM 283
           + A V ++  + T    P   CV +                 K E++LSAG++G+P LL 
Sbjct: 227 INAQVTKLVNSGTTNGLPAFRCVEYAEQEGAPTTTV----CAKKEVVLSAGSVGTPILLQ 282

Query: 284 LSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMNAL--FVPSARPVEVSLVQVVGITR-F 340
           LSG+G  N+L   GI  +V+ P+VG+ +SD+ +     FV S +  +             
Sbjct: 283 LSGIGDENDLSSVGIDTIVNNPSVGRNLSDHLLLPAAFFVNSNQTFDNIFRDSSEFNVDL 342

Query: 341 DSYIETASG-LSLAPSWAQGLTRDYSSFLNKTDIPSLVTPET--------VAEAVETVNS 391
           D +  T +G L+   +      R  S+       P                 +       
Sbjct: 343 DQWTNTRTGPLTALIANHLAWLRLPSNSSIFQTFPDPAAGPNSAHWETIFSNQWFHPAIP 402

Query: 392 YLNG--TIRAGVIVEKIMGPRSTGHLRLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTI 449
             +    +     +   + P + G ++L T +  D P +   Y     D+   +Q +++ 
Sbjct: 403 RPDTGSFMSVTNAL---ISPVARGDIKLATSNPFDKPLINPQYLSTEFDIFTMIQAVKSN 459

Query: 450 IDVLNSRALSKFRYPDVSVQELIDLMVNIPTNLRPRHVVGASIS-LEQFCRDTVMTIWHY 508
           +  L+ +A + F                      PR       + +E + RD   TI+H 
Sbjct: 460 LRFLSGQAWADFV----------------IRPFDPRLRDPTDDAAIESYIRDNANTIFHP 503

Query: 509 HG----GCQVDR--VVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLG 554
            G      +     VVD D KV GVDGLR++DGS    +P  + Q    ++G
Sbjct: 504 VGTASMSPRGASWGVVDPDLKVKGVDGLRIVDGSILPFAPNAHTQGPIYLVG 555

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae} Length = 577

 Score =  219 bits (560), Expect = 3e-64
 Identities = 120/611 (19%), Positives = 196/611 (32%), Gaps = 153/611 (25%)

Query: 42  YDYIIVGGGTSGCPLAATLSQNA--TVLLLEKGGSPYENPNITDTGNFATTLLDPS---- 95
           +D++IVGGGT+G  +A  L++N   TVL++E G    E+     T + A  L +      
Sbjct: 7   FDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYDWA 66

Query: 96  -PTSPSQQFISEDGVYN-------ARARVLGGGSVINAGFYTRASLRYVRE--------- 138
             T+                     R + LGG S +N   +        +          
Sbjct: 67  YKTTM------VRRDDYERIEKPNTRGKTLGGSSSLNYFTWVPGH----KATFDQWEEFG 116

Query: 139 -VGWT-----------ESLVNSSYEWVEKKVAH---------EPPMLQWQSAVRDGLLEA 177
              WT            +  +    +  +                ++   +  R+ L +A
Sbjct: 117 GKEWTWDPLVPYLRKSATYHDDPRLYSPELEKIGGGGPIPISHAELIDEMAPFRENLTKA 176

Query: 178 GV---LPYN---------GFTFDHIYGTKVSGTIFDEDGHRHSAADLLEYADPEK----L 221
                 P           G T           TI+   G R  +          K    +
Sbjct: 177 WKSMGQPLIENIYDGEMDGLTHCCD-------TIYR--GQRSGSFL------FVKNKPNI 221

Query: 222 TVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARH--RACLNNGGKNEIILSAGAIGSP 279
           T+      +R+   E  R   T   VT     G      A        E+ILS G   +P
Sbjct: 222 TIVPEVHSKRLIINEADR---TCKGVTVVTAAGNELNFFA------DREVILSQGVFETP 272

Query: 280 QLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMNALFVPSARPVEVSLVQVVGITR 339
           +LLMLSG+GP  EL + GI  +VD  +VGQ + D+P     +       +  V +    +
Sbjct: 273 KLLMLSGIGPTRELSRHGINTIVDSRHVGQNLMDHPGVPFVLRVKDGFGMDDVLLRHGPK 332

Query: 340 FDS----YIETASG-LSLAPSWAQGLTR---------DYSSFLNKTDIPSLVTPETV--- 382
            D+    Y +  SG +        G  R         +Y             +P      
Sbjct: 333 RDAVVSAYNKNRSGPVGSGLLELVGFPRIDKYLEKDAEYRKAKAANGGKDPFSPLGQPHF 392

Query: 383 ----AEAVETVNSYLNGTIRAG----VIVEKIMGPRS-TGHLRLRTLDADDNPSVTFNYF 433
                    T   +   T + G    V+V+ ++ P S  G + L + D    P++  N+F
Sbjct: 393 ELDFVCMFGTAFQWHFPTPKTGDHLTVVVD-LVRPISDPGEVTLNSADPFQQPNINLNFF 451

Query: 434 QEPEDLVRCVQGMRTIIDVL-NSRALSKFRYPDVSVQELIDLMVNIPTNLRPRHVVGASI 492
               D++   +G+R   D+L                           +           +
Sbjct: 452 ANDLDIIAMREGIRFSYDLLFKGEGFKDLV----------------ESEYPW----EMPL 491

Query: 493 S----LEQFCRDTVMTIWHYHG----GCQVDR-VVDRDYKVLGVDGLRVIDGSTFYNSPG 543
                + +   D   T +H  G       +D+ VVD   KV G+  LRV D S     P 
Sbjct: 492 DSDKEMHRAVLDRCQTAFHPTGTARLSKNIDQGVVDPKLKVHGIKKLRVADASVIPIIPD 551

Query: 544 TNPQATCMMLG 554
              Q +   +G
Sbjct: 552 CRIQNSVYAVG 562

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti} Length = 526

 Score =  215 bits (550), Expect = 3e-63
 Identities = 117/582 (20%), Positives = 201/582 (34%), Gaps = 155/582 (26%)

Query: 42  YDYIIVGGGTSGCPLAATLSQNA--TVLLLEKGGSPYENPNITDTGNFATTLLDPS---- 95
            D +IVGGG++G  LAA LS++    VLL+E G  P  +P+I +   +   L   S    
Sbjct: 18  CDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPT-DPDIWNPAAWPA-LQGRSYDWD 75

Query: 96  -PTSPSQQFISEDG--VYNARARVLGGGSVINAGFYTRASLRYVREVG-------WTESL 145
             T   Q      G   + AR R++GG S ++A  Y R         G       W ++ 
Sbjct: 76  YRTEA-QAGT--AGRAHHWARGRLIGGSSCLHAMGYMR---------GHPSDFQAWVDAS 123

Query: 146 VNS--SYE--------------------------WVEKKVAHEPPMLQWQSAVRDGLLEA 177
            +    ++                           +        P+ +   A  +     
Sbjct: 124 GDRRWGWDELLPVFQAIEDHPLGGDGIHGKGGPLPIHLPADEVSPLAR---AFIEAGASL 180

Query: 178 GVLPYN---------GFTFDHIYGTKVSGTIFDEDGHRHSAADLLEYADPEK-----LTV 223
           G LP           G T + +        I D  G R +AAD   +          LT+
Sbjct: 181 G-LPRLEGHNSGEMIGVTPNSL-------NIRD--GRRVTAAD--AWLTKAVRGRKNLTI 228

Query: 224 YLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLM 283
              + V+R+K  E  + +     +                   ++I+L AGA+ SP LLM
Sbjct: 229 LTGSRVRRLKL-EGNQVR----SLE-VVGRQGSAEVF-----ADQIVLCAGALESPALLM 277

Query: 284 LSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMNALFVPSARPVEVSLVQVVGITRFDSY 343
            SG+GP + L   G+  ++D P++G+ + D+ + A  + +AR       + V        
Sbjct: 278 RSGIGPHDVLDAAGVGCLIDMPDIGRNLQDHLLGAGNLYAAR-------KPVPP------ 324

Query: 344 IETASGLSLAPSWAQGLTRDYSSFLNKTDIPSL---VTPETVAEAVETVNSYLNG-TIRA 399
                   L  S +    R  +        P +        +        +  +  ++  
Sbjct: 325 ------SRLQHSESMAYMR--ADSFTAAGQPEIVVGCGVAPIVSESFPAPAAGSAYSLLF 376

Query: 400 GVIVEKIMGPRSTGHLRLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALS 459
           G+       P S G +R+   +  D   +   Y Q   D  R  + +     + +   L+
Sbjct: 377 GI-----THPTSRGSVRISGPELGDRLIIDPAYLQTGRDRERFRRALEASRTIGHRDELA 431

Query: 460 KFRYPDVSVQELIDLMVNIPTNLRPRHVVGASIS---LEQFCRDTVMTIWHYHGGCQ--V 514
            +R                   L P    G   S   ++ F   +V+T  H  G C+   
Sbjct: 432 GWR----------------ERELLP----GTPNSAAEMDDFIARSVITHHHPCGTCRMGK 471

Query: 515 DR--VVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLG 554
           D   VVD + ++  +D L V+D S   N       A  + + 
Sbjct: 472 DPDAVVDANLRLKALDNLFVVDASIMPNLTAGPIHAAVLAIA 513

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A* Length = 546

 Score =  212 bits (543), Expect = 5e-62
 Identities = 104/596 (17%), Positives = 161/596 (27%), Gaps = 154/596 (25%)

Query: 42  YDYIIVGGGTSGCPLAATLSQN-ATVLLLEKGGSPYENPNITDTGNFATTLLDPSPTSPS 100
           YDYIIVG G  G   A  LS+    VLLLE+GG          T     T + P  TS  
Sbjct: 8   YDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGP--------STKQTGGTYVAPWATSSG 59

Query: 101 QQFISEDGVYNA-----------------RARVLGGGSVINAGFYTRASLR-YVREVGWT 142
                  G++ +                    ++GGG+ +N   Y   +   +   VGW 
Sbjct: 60  LTKFDIPGLFESLFTDSNPFWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFSSSVGWP 119

Query: 143 ESLVNSSYE-------------------------WVEKKVAHEPPMLQWQSAVRDGLLEA 177
                SS+                          ++E+       + Q            
Sbjct: 120 -----SSWTNHAPYTSKLSSRLPSTDHPSTDGQRYLEQ---SFNVVSQLLKGQ-----GY 166

Query: 178 GVLP---YNGFTFDHIYGTKVSGTIFD---EDGHRHSAADLLEYADPEK----LTVYLRA 227
                     +  DH++G             +G R        Y          T     
Sbjct: 167 NQATINDNPNYK-DHVFG------YSAFDFLNGKRAGPVA--TYLQTALARPNFTFKTNV 217

Query: 228 VVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKN-------EIILSAGAIGSPQ 280
           +V  +      +             +G +                   +ILSAGA G+ +
Sbjct: 218 MVSNVVR-NGSQI------------LGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSR 264

Query: 281 LLMLSGVGPANELRKRGIRVVVDQPN----------VGQGMSDNPMNALFVPSARPVEVS 330
           +L  SG+GP + ++                      VG    DNP   L           
Sbjct: 265 ILFQSGIGPTDMIQTVQSNPTAAAALPPQNQWINLPVGMNAQDNPSINLVFTHPSIDAYE 324

Query: 331 LVQVVGITR----FDSYIETASG-LSLAPSWAQGLTRDYSSFLNKTDIPSLVTPETVAEA 385
               V           Y+   SG  + A            S          V P   +  
Sbjct: 325 NWADVWSNPRPADAAQYLANQSGVFAGASPKLNFWRAYSGSDGFTRYAQGTVRPGAASVN 384

Query: 386 VETVNSYLNGTIRAGVIVEKIMGPRSTGHLRLRTLDADDNPSVTFNYFQEPEDLVRCVQG 445
                   N +    + V    G +S G + +    A     +T  +   P D    +Q 
Sbjct: 385 SSLP---YNASQIFTITVYLSTGIQSRGRIGID--AALRGTVLTPPWLVNPVDKTVLLQA 439

Query: 446 MRTIIDVLNSRALSKFRYPDVSVQ--ELIDLMVNIPTNLRPRHVVGASISLEQFCRDTVM 503
           +  ++  + S        PDV+    E +D                             M
Sbjct: 440 LHDVVSNIGSIPGLTMITPDVTQTLEEYVD-----------------------AYDPATM 476

Query: 504 TIWHYHGGCQ--VDR---VVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLG 554
              H+             VVD + KV G + L ++D     + P  NPQ T M   
Sbjct: 477 NSNHWVSSTTIGSSPQSAVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLMSAA 532

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A* Length = 546

 Score =  151 bits (383), Expect = 1e-39
 Identities = 80/323 (24%), Positives = 126/323 (39%), Gaps = 78/323 (24%)

Query: 42  YDYIIVGGGTSGCPLAATLSQNA--TVLLLEKGGSPYENPNITDTGNFATTLLDPS---- 95
           +DYI+VGGG++G  +AA LS++   +V L+E G             +    LL+      
Sbjct: 14  FDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDR-GVPEVLQLDRWMELLESGYDWD 72

Query: 96  -PTSPSQQFISEDG----VYNARARVLGGGSVINAGFYTRAS------------------ 132
            P  P      ++     + +ARA+V+GG S  N+     A                   
Sbjct: 73  YPIEP------QENGNSFMRHARAKVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNA 126

Query: 133 ---LRYVREV-GWTESLVNSSY-----EWVEKKVAHEPPMLQWQSAVRDGLLEAGVLP-- 181
                  + +    ++  ++ +           V  + P      A+ D   +AG +P  
Sbjct: 127 EAAWPLYKRLETNEDAGPDAPHHGDSGPVHLMNVPPKDPTGV---ALLDACEQAG-IPRA 182

Query: 182 --YNGFTFDHIYGTKVSGTIFD----EDGHRHSAADLLEYADPEK----LTVYLRAVVQR 231
               G T  +          F      DG R S++    Y  P       T+      ++
Sbjct: 183 KFNTGTTVVNGAN------FFQINRRADGTRSSSSV--SYIHPIVEQENFTLLTGLRARQ 234

Query: 232 IKFTETGRAKPTAHCVTF-YDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPA 290
           + F    R   T   V       G  HR       +NE++LS GAI +P+LLMLSG+GPA
Sbjct: 235 LVFDADRRC--TG--VDIVDSAFGHTHRL----TARNEVVLSTGAIDTPKLLMLSGIGPA 286

Query: 291 NELRKRGIRVVVDQPNVGQGMSD 313
             L + GI V+VD P VG+ + D
Sbjct: 287 AHLAEHGIEVLVDSPGVGEHLQD 309

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A* Length = 546

 Score = 89.1 bits (222), Expect = 6e-19
 Identities = 46/160 (28%), Positives = 65/160 (40%), Gaps = 32/160 (20%)

Query: 407 MGPRSTGHLRLRTLDADDNPSVTFNYFQEPE--DLVRCVQGMRTIIDVLNSRALSKFRYP 464
              RS G +RLR+ D  D P V   YF +PE  D+   V G+R   ++    A++++   
Sbjct: 380 THARSRGTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPAMAEWT-- 437

Query: 465 DVSVQELIDLMVNIPTNLRPRHVVGASIS----LEQFCRDTVMTIWHYHG----GCQVDR 516
                            L P    G        L+ + R T  T++H  G    G   D 
Sbjct: 438 --------------GRELSP----GVEAQTDEELQDYIRKTHNTVYHPVGTVRMGAVEDE 479

Query: 517 --VVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLG 554
              +D + +V GV GLRV D S        NP  T MM+G
Sbjct: 480 MSPLDPELRVKGVTGLRVADASVMPEHVTVNPNITVMMIG 519

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* Length = 504

 Score = 95.5 bits (237), Expect = 5e-21
 Identities = 97/586 (16%), Positives = 170/586 (29%), Gaps = 141/586 (24%)

Query: 40  SYYDYIIVGGGTSGCPLAATLSQN-ATVLLLEKG------GSPYENPNITDTGNFATTLL 92
            Y   +++G G      A  L +     L+LE G      G            +  ++  
Sbjct: 4   GYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWF 63

Query: 93  DPSPTSPS-------------------QQFISEDGVYNARARVLGGGSVINAGFYTRASL 133
                +P                       ++ D +     R +GGGS++N G       
Sbjct: 64  KNRTEAPLGSFLWLDVVNRNIDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKR 123

Query: 134 RYVREVGW---TESLVNSSYEWVEK--KVAHE-------PPMLQWQSAVRDGLLEAGV-- 179
            Y  E+     +  + +  +       +V H            ++    R+   +AG+  
Sbjct: 124 SYFEEILPRVDSSEMYDRYFPRANSMLRVNHIDTKWFEDTEWYKFARVSREQAGKAGLGT 183

Query: 180 ----LPYNGFTFDHIYGTKVSGTIFDED---GHRHSAADLLE-YADP----EKLTVYLRA 227
                 Y+          +V  +    +   G+ H    L + Y        K+T+    
Sbjct: 184 VFVPNVYDFGYMQREAAGEVPKSALATEVIYGNNHGKQSLDKTYLAAALGTGKVTIQTLH 243

Query: 228 VVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGV 287
            V+ I+ T+ G    T         + A             + L AG++GS +LL+ +  
Sbjct: 244 QVKTIRQTKDGGYALTVEQKDTDGKLLATKEI-----SCRYLFLGAGSLGSTELLVRA-- 296

Query: 288 GPANELRKRGIRVVVDQPNVGQGMSDNPMNALF----VPSARPVEVSLVQVVGITRFDSY 343
                 R  G    ++   VG G   N          + +      S +  +GI  +D  
Sbjct: 297 ------RDTGTLPNLN-SEVGAGWGPNGNIMTARANHMWNPTGAHQSSIPALGIDAWD-N 348

Query: 344 IETASGLSLAPSWAQGLTRDYSSFLNKTDIPSLVTPETVAEAVETVNSYLNGTIRAGVIV 403
            +++    +AP    GL    S +L  T  P                    GT       
Sbjct: 349 SDSSVFAEIAP-MPAGLETWVSLYLAITKNPQ------------------RGTFV----- 384

Query: 404 EKIMGPRSTGHLRLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRY 463
                  +T   +L      + P+               V   + + D +N    + +RY
Sbjct: 385 ----YDAATDRAKLNWTRDQNAPA---------------VNAAKALFDRINKANGTIYRY 425

Query: 464 PDVSVQELIDLMVNIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVDRVVDRDYK 523
                  L    +    +    H +G                     GC + +  D   +
Sbjct: 426 D------LFGTQLKAFADDFCYHPLG---------------------GCVLGKATDDYGR 458

Query: 524 VLGVDGLRVIDGSTFYNSPGTNPQATCMMLGRYMGLRILQDRDRIS 569
           V G   L V DGS    S G NP  T   L      RI++     S
Sbjct: 459 VAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVERIIKQDVTAS 504

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* Length = 507

 Score = 79.0 bits (194), Expect = 9e-16
 Identities = 80/573 (13%), Positives = 159/573 (27%), Gaps = 132/573 (23%)

Query: 42  YDYIIVGGGTSGCPLAATLSQN-ATVLLLEKG------GSPYENPNITDTGNFATTLLDP 94
              +++G G  G   A  L+Q      ++E G      GS  +        +  +  L  
Sbjct: 12  VPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMWLAD 71

Query: 95  SPTSPSQQF------------------ISEDGVYNARARVLGGGSVINAGFYTRASLRYV 136
               P   F                      G+   + R +GGGS++N G        Y 
Sbjct: 72  KTDQPVSNFMGFGINKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRNYF 131

Query: 137 REVGW---TESLVNSSYEWVEKKVAHEPPMLQW--------------QSAVRDGLLEAGV 179
            E+     +  + N  +      +        W              ++A R G   A V
Sbjct: 132 EEILPSVDSNEMYNKYFPRANTGLGVNNIDQAWFESTEWYKFARTGRKTAQRSGFTTAFV 191

Query: 180 -LPYNGFTFDHIYGTKVSGTIFDED---GHRHSAADLLE-YADP----EKLTVYLRAVVQ 230
              Y+          +V+ +    +   G+      L + Y        KLT+     V 
Sbjct: 192 PNVYDFEYMKKEAAGQVTKSGLGGEVIYGNNAGKKSLDKTYLAQAAATGKLTITTLHRVT 251

Query: 231 RIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPA 290
           ++          T   +    +V A           + +  +AG++G+ +LL+       
Sbjct: 252 KVAPATGSGYSVTMEQIDEQGNVVATKVVT-----ADRVFFAAGSVGTSKLLVSM----- 301

Query: 291 NELRKRGIRVVVDQPNVGQGMSDNPMNALFVPSARPVEVSLVQVVGITRFDSYIETASGL 350
              + +G    +    VG+G  +N  N +   +    + +  +   I             
Sbjct: 302 ---KAQGHLPNLS-SQVGEGWGNNG-NIMVGRANHMWDATGSKQATIPTMGID------- 349

Query: 351 SLAPSWAQGLTRDYSSFLNKTDIPSLVTPETVAEAVETVNSYLNGTIRAGVIVEKIMGPR 410
                       +++             P  +   V    +      RA     +     
Sbjct: 350 ------------NWADPTAPIFAEIAPLPAGLETYVSLYLAITKNPERA-----RFQFNS 392

Query: 411 STGHLRLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQE 470
            TG + L    + +                  +   + + D +N +  + +R     +  
Sbjct: 393 GTGKVDLTWAQSQNQKG---------------IDMAKKVFDKINQKEGTIYRTD---LFG 434

Query: 471 LIDLMVNIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVDRVVDRDYKVLGVDGL 530
           +              H +G                     G  +++  D   ++    GL
Sbjct: 435 VYYKTWGDDFTY---HPLG---------------------GVLLNKATDNFGRLPEYPGL 470

Query: 531 RVIDGSTFYNSPGTNPQATCMMLGRYMGLRILQ 563
            V+DGS    + G NP  T   L      +I+ 
Sbjct: 471 YVVDGSLVPGNVGVNPFVTITALAERNMDKIIS 503

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... Length = 623

 Score = 77.2 bits (189), Expect = 4e-15
 Identities = 83/592 (14%), Positives = 158/592 (26%), Gaps = 95/592 (16%)

Query: 42  YDYIIVGGGTSGCPLAATLSQN-ATVLLLEKGGSPYENPNITDTGNFATTLLDPS----- 95
           YD +IVG G  GC  A  L      V + + G             N      +       
Sbjct: 47  YDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFVNV 106

Query: 96  ----------PTSPSQQFISEDGVY-----------------------NARARVLGGGSV 122
                     P +           +                        A  RV+GG S 
Sbjct: 107 IQGQLMSVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRVVGGMST 166

Query: 123 INAGFYTRASLRYVREV-------GW-------------TESLVNSSYEWVEKKVAHEPP 162
                +T A+ R+ RE                        ES   +  +  ++ + H   
Sbjct: 167 ----AWTCATPRFDREQRPLLVKDDADADDAEWDRLYTKAESYFQTGTDQFKESIRHNLV 222

Query: 163 MLQWQSAVRDGLLEAGVLPYNGFTFDHIYGTKVSGTIFDEDGHRHSAADLLEYADPEKLT 222
           + +     +    +   +P         +    S     +  +R +       A  E+  
Sbjct: 223 LNKLTEEYKGQR-DFQQIPLAATRRSPTFVEWSSANTVFDLQNRPNTD-----APEERFN 276

Query: 223 VYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLL 282
           ++     +R+          + H            +A       +  +L+AGA+ + QLL
Sbjct: 277 LFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKA-------DVYVLTAGAVHNTQLL 329

Query: 283 MLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMNALFVPSARPVEVSLVQVVGITRFDS 342
           + SG G                P++G  +++  +  +F  +    E+       +T   +
Sbjct: 330 VNSGFGQLGRPNPANP--PELLPSLGSYITEQSL--VFCQTVMSTELIDSVKSDMTIRGT 385

Query: 343 YIETASGLSLAPSWAQGLTRDYSS-FLNKTDIPSLVTPETVAEAVETVNSYLNGTIRAGV 401
             E    ++  P  +     D+ +  +    +     P  +                   
Sbjct: 386 PGELTYSVTYTPGASTNKHPDWWNEKVKNHMMQHQEDPLPIPFEDPEPQVTTLFQPSHPW 445

Query: 402 IVEKIMGPRSTGHLRLRTLDADDNPSVTFNYFQEPE-DLVRCVQGMRTIIDVLNSRALS- 459
                   R            D    V + +F   E      +     I D  N    + 
Sbjct: 446 ---HTQIHRDAFSYGAVQQSIDSRLIVDWRFFGRTEPKEENKLWFSDKITDAYNMPQPTF 502

Query: 460 KFRYPDVSVQELIDLMVNIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGC------- 512
            FR+P     +  + M+     +     +G  +            + H  G         
Sbjct: 503 DFRFPAGRTSKEAEDMMTDMCVMS--AKIGGFLPGSLPQFMEPGLVLHLGGTHRMGFDEK 560

Query: 513 QVDRVVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLGRYMGLRILQD 564
           + +  V+ D +V G   L +        + G NP  T M L       I Q+
Sbjct: 561 EDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKSCEYIKQN 612

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 2e-05
 Identities = 41/301 (13%), Positives = 89/301 (29%), Gaps = 58/301 (19%)

Query: 293 LRKRGIRVVVDQPNVGQGMSDNPMNALF-VPSARPVEVSLVQVVGITRFDSYIETASGLS 351
           L K  I  ++   +       +    LF    ++  E+    V  + R + Y    S + 
Sbjct: 46  LSKEEIDHIIMSKDA-----VSGTLRLFWTLLSKQEEMVQKFVEEVLRIN-YKFLMSPIK 99

Query: 352 LAPSWAQGLTRDYSSFLNKT-DIPSLVTPETV--AEAVETVNSYLNGTIRA-GVIVEKIM 407
                   +TR Y    ++  +   +     V   +    +   L     A  V+++ ++
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159

Query: 408 GPRSTGH--LRLRTLDADD----NPS----VTFNYFQEPEDLVRCVQGMRTIIDVLNSRA 457
           G   +G   + L    +             +       PE ++  +Q +   I       
Sbjct: 160 G---SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI------- 209

Query: 458 LSKFRYPDVSVQELIDLMVNIPTNL-----RPRHVVGASISLEQFCR-----DTVMTIWH 507
                  D +     D   NI   +       R +    +  + +         V     
Sbjct: 210 -------DPNWTSRSDHSSNIKLRIHSIQAELRRL----LKSKPYENCLLVLLNVQNAKA 258

Query: 508 ---YHGGCQVDRVVDRDYKVL-GVDGLRVIDGSTFYNSPGTNPQATCMMLGRYMGLRILQ 563
              ++  C++  +  R  +V   +        S  ++S    P     +L +Y+  R  Q
Sbjct: 259 WNAFNLSCKI-LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP-Q 316

Query: 564 D 564
           D
Sbjct: 317 D 317

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 6e-05
 Identities = 75/597 (12%), Positives = 163/597 (27%), Gaps = 197/597 (32%)

Query: 67  LLLEKGGSPYENPNITDTGNFATTLLDP--------------SPTSPSQQFISEDGVYNA 112
            LL K     +         F   +L                 P+  ++ +I +      
Sbjct: 70  TLLSKQEEMVQK--------FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ------ 115

Query: 113 RARVLGGGSVINAGFYTRASLRYVREVGWTESLVN-SSYEWVEKKVAHEPPML----QW- 166
           R R+     V      +R       ++   ++L+     + V   +     +L     W 
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQP--YLKL--RQALLELRPAKNV---LIDG--VLGSGKTWV 166

Query: 167 -QSAVRDGLLEAGVLPYNGFTFDHIYGTKVSGTIFDEDGHRHSAADLLE-------YADP 218
                        V     F    I+   +         + +S   +LE         DP
Sbjct: 167 ALDVCLS----YKVQCKMDF---KIFWLNL--------KNCNSPETVLEMLQKLLYQIDP 211

Query: 219 EKL-------TVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIIL 271
                      + LR    + +     ++KP  +C+    +V            +N    
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV------------QNAKAW 259

Query: 272 SAGAIGSPQLLMLSGVGPANELRKRGI--------RVVVDQPNVGQGMSDNPMNALFV-- 321
           +A  +   ++L+ +        R + +           +   +    ++ + + +L +  
Sbjct: 260 NAFNLSC-KILLTT--------RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310

Query: 322 ----PSARPVEVS-----LVQVVG------ITRFDSY-------IETASGLSLA---PSW 356
               P   P EV       + ++       +  +D++       + T    SL    P+ 
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370

Query: 357 AQGLTRDYSSFLNKTDIPSLVT----PETVAEAVETVNSYLNGTIRAGVIVEKIMGPRST 412
            + +    S F     IP+++      + +   V  V   +N   +  ++ ++     ST
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV---VNKLHKYSLVEKQ--PKEST 425

Query: 413 GHLRLRTLDADDNPSVTFNYFQEPEDLVRCVQGM-RTIIDVLNSRALSKFRYPDVSVQ-- 469
             +          PS+      + E+       + R+I+D  N      F   D+     
Sbjct: 426 ISI----------PSIYLELKVKLENEYA----LHRSIVDHYN--IPKTFDSDDLIPPYL 469

Query: 470 ------------------ELIDLMVNIPTNLR-----PRHVVGASISLEQFCRDTVMTIW 506
                             E + L   +  + R      RH    + +      +T+  + 
Sbjct: 470 DQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRH-DSTAWNASGSILNTLQQLK 528

Query: 507 HYHGGCQVDRVVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLGRYMGLRILQ 563
            Y        + D D          V     F      N       L       +L+
Sbjct: 529 FYK-----PYICDND----PKYERLVNAILDFLPKIEEN-------LICSKYTDLLR 569

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 2e-04
 Identities = 56/390 (14%), Positives = 114/390 (29%), Gaps = 113/390 (28%)

Query: 187 FDHIYGTK--VSGT--IFD--EDGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRA 240
            DHI  +K  VSGT  +F              +E         Y + ++  IK  +   +
Sbjct: 51  IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN---Y-KFLMSPIKTEQRQPS 106

Query: 241 KPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRV 300
             T      Y  +  R R  L N  +   + +   +   Q        P  +LR+  +  
Sbjct: 107 MMT----RMY--IEQRDR--LYNDNQ---VFAKYNVSRLQ--------PYLKLRQ-ALLE 146

Query: 301 VVDQPNVG-QGM-----SDNPMNALFVPSARPVEVSLVQVVGI--------TRFDSYIET 346
           +    NV   G+     +      + +      +V       I           ++ +E 
Sbjct: 147 LRPAKNVLIDGVLGSGKT-----WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201

Query: 347 ASGLS--LAPSWAQGLTRDYSSFLNKTDIPSLVTPETVAEAVETVNSYLNGTIRAGVIVE 404
              L   + P+W        +  L                 + ++ + L   ++      
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLR----------------IHSIQAELRRLLK-----S 240

Query: 405 KIMGPRSTGHLRLRTLDADD--NPSVTFNYFQEPEDLVRCVQGMRTII---DVLNSRALS 459
           K           L  L   +  N    +N F    +L  C    + ++       +  LS
Sbjct: 241 K-PYENC-----L--LVLLNVQNAKA-WNAF----NL-SC----KILLTTRFKQVTDFLS 282

Query: 460 KFRYPDVSVQELIDLM------------VNIPTNLRPRHVVGAS---ISL-EQFCRDTVM 503
                 +S+      +            ++      PR V+  +   +S+  +  RD + 
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA 342

Query: 504 TI--WHYHGGCQVDRVVDRDYKVLGVDGLR 531
           T   W +    ++  +++    VL     R
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* Length = 453

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 42 YDYIIVGGGTSGCPLAATLSQN-ATVLLLEKGGSP 75
          YD +I+GGG +G   A  LS+    +LL++     
Sbjct: 7  YDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWN 41

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} Length = 405

 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 48/317 (15%), Positives = 83/317 (26%), Gaps = 45/317 (14%)

Query: 42  YDYIIVGGGTSGCPLAATLSQ---NATVLLLEKGGSPYENPNITDTGNFATTLLDPSPTS 98
           +D +++G G  G   A  L Q     ++LL+E+GG P E           T    P+   
Sbjct: 37  FDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNEEGATILAPGVWTAQDIPAGQE 96

Query: 99  PSQQFISEDGVYNARARVLGGGSVINAGFYTRASLRYVREVGWTESLVNSSYEWVEKKVA 158
              ++  E          LG G  +         L    E       +++  ++ E    
Sbjct: 97  AQAEWTREQL-----LGALGSGKTLEVEDRPLLHLLPAGEGSGLTPTLDALADFPEALAL 151

Query: 159 HEPPMLQWQSAVRDGLLEAGVLPYNGFTFDHIYGTKVSGTIFDEDGHRHSAADLLEYADP 218
            +P  L                P +                         A    + A  
Sbjct: 152 LDPARLPVARVDPRA---LTYRPGSL------------------------ALLAAQQAIG 184

Query: 219 EKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGS 278
           +   + L    + +            +      H   + RA         II++AGA   
Sbjct: 185 QGAGLLLNTRAELVPGGVRLHRLTVTNTHQIVVHETRQIRA-------GVIIVAAGA-AG 236

Query: 279 PQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMNALFVPSARPVEVSLVQVVGIT 338
           P L+           R       +D  +  Q            P       +LV  +   
Sbjct: 237 PALVEQGLGLHTRHGRAYRQFPRLDLLSGAQTPVLRASGLTLRPQNGG--YTLVPAIHHR 294

Query: 339 RFDSYIETASGLSLAPS 355
               Y      L+  P+
Sbjct: 295 DPHGYHPAGGSLTGVPT 311

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Length = 421

 Score = 41.3 bits (97), Expect = 6e-04
 Identities = 9/35 (25%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 42 YDYIIVGGGTSGCPLAATLSQN-ATVLLLEKGGSP 75
           D +++G G +G   A+ ++++   V ++EK   P
Sbjct: 6  VDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFP 40

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* Length = 381

 Score = 41.1 bits (97), Expect = 7e-04
 Identities = 11/36 (30%), Positives = 19/36 (52%)

Query: 40 SYYDYIIVGGGTSGCPLAATLSQNATVLLLEKGGSP 75
             DY+++G G +G      LS +  V++LE+   P
Sbjct: 8  IEADYLVIGAGIAGASTGYWLSAHGRVVVLEREAQP 43

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	570
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	100.0
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	100.0
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	100.0
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	100.0
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	100.0
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	100.0
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	100.0
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	100.0
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	100.0
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	100.0
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	100.0
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	99.61
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	99.51
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	99.5
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	99.39
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	99.34
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	99.33
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	99.32
3dme_A	369	Conserved exported protein; structural genomics, P	99.26
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	99.26
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	99.21
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	99.21
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	99.15
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	99.14
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	99.13
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	99.12
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	99.1
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	99.1
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	99.07
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	99.03
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	99.03
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	99.02
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	99.01
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	99.01
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	99.0
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	99.0
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.99
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.96
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	98.92
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	98.92
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	98.88
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	98.87
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	98.84
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	98.83
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	98.82
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	98.81
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	98.8
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	98.8
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	98.8
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	98.73
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	98.73
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	98.72
3atr_A	453	Conserved archaeal protein; saturating double bond	98.7
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	98.68
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	98.66
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	98.56
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	98.54
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	98.53
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	98.53
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	98.52
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.52
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	98.5
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	98.47
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	98.46
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.46
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	98.43
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.4
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	98.38
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.38
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.37
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	98.36
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	98.35
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	98.35
2bry_A	497	NEDD9 interacting protein with calponin homology a	98.33
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	98.3
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.3
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.28
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	98.24
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	98.22
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	98.22
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	98.21
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	98.19
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	98.17
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.16
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.15
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.12
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.12
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	98.11
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	98.09
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.04
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	98.03
4fk1_A	304	Putative thioredoxin reductase; structural genomic	98.01
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	97.99
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	97.98
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	97.95
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	97.93
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	97.92
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	97.87
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	97.83
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	97.8
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	97.79
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	97.78
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	97.77
2cul_A	232	Glucose-inhibited division protein A-related PROT	97.69
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	97.68
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	97.65
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	97.65
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	97.63
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.63
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	97.62
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	97.61
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	97.6
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	97.6
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	97.58
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	97.56
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	97.56
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	97.54
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	97.54
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	97.53
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	97.52
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	97.52
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	97.5
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	97.5
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	97.5
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	97.49
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	97.49
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	97.47
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	97.46
4dna_A	463	Probable glutathione reductase; structural genomic	97.46
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	97.46
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	97.44
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	97.44
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	97.43
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	97.42
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	97.42
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	97.41
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	97.41
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	97.4
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	97.4
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.37
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	97.34
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	97.32
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	97.32
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	97.32
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	97.31
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	97.31
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	97.31
1ojt_A	482	Surface protein; redox-active center, glycolysis,	97.31
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	97.29
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	97.28
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	97.28
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	97.27
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	97.26
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	97.26
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	97.26
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	97.25
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	97.25
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	97.24
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	97.23
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	97.23
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	97.21
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	97.21
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.2
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	97.18
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	97.17
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	97.16
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	97.15
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	97.14
4hb9_A	412	Similarities with probable monooxygenase; flavin,	97.11
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	97.1
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	97.1
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	97.08
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	97.07
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	97.06
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	97.04
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	96.98
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	96.96
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	96.89
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	96.88
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	96.86
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	96.85
1fec_A	490	Trypanothione reductase; redox-active center, oxid	96.84
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	96.84
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	96.82
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	96.78
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	96.78
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	96.77
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	96.77
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	96.75
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	96.73
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	96.65
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	96.64
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	96.63
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	96.63
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	96.6
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	96.59
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	96.58
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	96.49
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	96.44
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	96.43
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	96.4
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	96.38
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	96.37
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	96.36
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	96.3
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	96.3
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	96.25
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	96.22
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	96.2
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	96.15
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	96.05
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	96.05
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	95.88
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	95.87
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	95.87
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	95.84
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	95.81
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	95.73
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	95.68
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	95.65
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	95.63
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	95.61
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	95.6
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	95.56
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	95.52
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	95.51
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	95.41
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	95.35
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	95.31
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	95.26
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	95.24
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	95.01
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	94.75
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	94.72
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	94.43
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	94.37
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	94.35
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	94.07
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	93.98
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	93.91
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	93.89
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	93.73
4dna_A	463	Probable glutathione reductase; structural genomic	93.5
1fec_A	490	Trypanothione reductase; redox-active center, oxid	91.96
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	91.84
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	91.79
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	91.73
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	91.2
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	90.9
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	90.62
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	90.59
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	90.49
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	90.03
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	89.7
1id1_A	153	Putative potassium channel protein; RCK domain, E.	89.2
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	88.86
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	88.82
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	88.72
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	86.61
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	86.38
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	86.3
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	86.19
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	85.65
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	85.48
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	85.38
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	85.33
1ojt_A	482	Surface protein; redox-active center, glycolysis,	84.74
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	84.33
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	84.21
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	84.0
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	83.99
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	83.82
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	83.65
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	83.65
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	83.61
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	83.46
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	83.45
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	83.17
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	82.95
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	82.88
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	82.84
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	82.77
2cul_A	232	Glucose-inhibited division protein A-related PROT	82.18
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	82.06
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	81.98
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	81.52
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	80.9
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	80.64
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	80.63
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	80.32
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	80.25
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	80.17
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	80.07
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	80.01

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=100.00  E-value=3.7e-80  Score=666.49  Aligned_cols=499  Identities=24%  Similarity=0.349  Sum_probs=366.1

Q ss_pred             cccEEEECCCCchhHHHHhhhc--cCeEEEEccCCCCCCCCCccccccccccc----CCCCCCCCCcccccCCcccccCC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ--NATVLLLEKGGSPYENPNITDTGNFATTL----LDPSPTSPSQQFISEDGVYNARA  114 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~--g~~VlvLE~G~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~g  114 (570)
                      +|||||||+|.|||++|.||+|  +.+|||||+|+....++....|..+....    .+|.|.+.++..+.++.+.+.+|
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~~~~~~~~~p~~~~~~~~~~~~~w~~~t~pq~~~~~r~~~~~rG   81 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDWNYTTTAQAGYNGRSIAYPRG   81 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCCTTCGGGTSGGGSGGGSSSSTTBCCCBCCCCGGGTTCCCBCCCB
T ss_pred             CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcccCCCceeCcchHHHhcCCCccccccccccCCCCCCceEeccCC
Confidence            6999999999999999999998  79999999998764444444554443322    36889999999999999999999


Q ss_pred             ceeccccccCceeeeCCChhhhh-------hCCCChhhhhhhhHHHHhhccC--------------C-----------CC
Q 008331          115 RVLGGGSVINAGFYTRASLRYVR-------EVGWTESLVNSSYEWVEKKVAH--------------E-----------PP  162 (570)
Q Consensus       115 ~~lGG~s~~~~~~~~r~~~~~~~-------~~gw~~~~l~~~~~~~~~~~~~--------------~-----------~~  162 (570)
                      |+|||+|.+|+|+|.|+.+.+++       ..+|+|+++.+||++.|+....              +           +.
T Consensus        82 k~lGGsS~iN~m~~~Rg~~~d~d~W~~~~G~~gWs~~~~~pyf~k~E~~~~~~~~~~~~~~~~~~~hG~~Gp~~v~~~~~  161 (566)
T 3fim_B           82 RMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNWDNIQQFVRKNEMVVPPADNHNTSGEFIPAVHGTNGSVSISLPGF  161 (566)
T ss_dssp             CBTTGGGGTSCCBCCCCCHHHHHHHHHHHTCTTSSHHHHHHHHHHHEEECCCTTCCCCTTTSCGGGSCBSSSEEEBSCSS
T ss_pred             cEEcCcccccceEEecCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhccCCccccccccccCCccccCCCCCeeeecCCC
Confidence            99999999999999999985432       2679999999999999875421              1           11


Q ss_pred             CcchHHHHHHHHHHc--CCCCCCCCCcCCCCcceeeeeEECCCCccccHHH-hhh-hcCCCCeEEEecceEEEEEec---
Q 008331          163 MLQWQSAVRDGLLEA--GVLPYNGFTFDHIYGTKVSGTIFDEDGHRHSAAD-LLE-YADPEKLTVYLRAVVQRIKFT---  235 (570)
Q Consensus       163 ~~~~~~~~~~~~~~~--G~~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~-~l~-~~~~~g~~i~~~~~V~~i~~~---  235 (570)
                      ..+....+.+++.++  |++...++......++......+ .+|.|+++.. |+. ...++|++|++++.|+||+++   
T Consensus       162 ~~~~~~~~~~a~~~~~~G~~~~~d~n~~~~~G~~~~~~~~-~~g~R~sa~~ayL~p~~~r~NL~Vlt~a~V~rIl~~~~~  240 (566)
T 3fim_B          162 PTPLDDRVLATTQEQSEEFFFNPDMGTGHPLGISWSIASV-GNGQRSSSSTAYLRPAQSRPNLSVLINAQVTKLVNSGTT  240 (566)
T ss_dssp             CCTHHHHHHHHHHHTHHHHCBCSCGGGSCCCEEEECCBSE-ETTEECCHHHHTHHHHTTCTTEEEESSCEEEEEECCEEE
T ss_pred             CCHHHHHHHHHHHHHhcCCCccCCCCCCCcceEEeeeeec-CCCEEcCHHHHHhhhhccCCCeEEECCCEEEEEEeecCC
Confidence            245667888999998  87543222111111221111112 2788888765 664 667899999999999999998   


Q ss_pred             CCCCCCCeEEEEEEEecCC-ceEEEEecCCCCceEEEcCCccccHHHHHHhCCCChhhhhhcCCcccccCCccCcccccC
Q 008331          236 ETGRAKPTAHCVTFYDHVG-ARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDN  314 (570)
Q Consensus       236 ~~~~~~~~v~GV~~~~~~G-~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGiG~~~~l~~~gi~~~~~~p~VG~~l~dh  314 (570)
                      ++   .++++||++.+.+| +.++++    ++|+||||||+|+||+|||+|||||+++|+++||+++.|+|.||+|||||
T Consensus       241 ~g---~~rA~GVe~~~~~g~~~~~v~----A~kEVILsAGai~SPqlL~lSGIGp~~~L~~~gI~vv~dlPgVG~NLqDH  313 (566)
T 3fim_B          241 NG---LPAFRCVEYAEQEGAPTTTVC----AKKEVVLSAGSVGTPILLQLSGIGDENDLSSVGIDTIVNNPSVGRNLSDH  313 (566)
T ss_dssp             TT---EEECCEEEEESSTTSCCEEEE----EEEEEEECCHHHHHHHHHHHTTEECHHHHHHTTCCCSEECTTTTCSBBCC
T ss_pred             CC---CCEEEEEEEEECCCceEEEEE----eeeEEEEecCCcCChHHHHhcCCCChHHHhhcCCCceecCcchhhhhhcC
Confidence            22   12999999996556 777777    67999999999999999999999999999999999999999999999999


Q ss_pred             CCceeeeccCCcccch-h-hhh-hcccchhhhHhhhcCCccCcC-----ccccccccccccccccC-CCCCCChHHHHHH
Q 008331          315 PMNALFVPSARPVEVS-L-VQV-VGITRFDSYIETASGLSLAPS-----WAQGLTRDYSSFLNKTD-IPSLVTPETVAEA  385 (570)
Q Consensus       315 ~~~~~~~~~~~~~~~~-~-~~~-~~~~~~~~~~~~~~g~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  385 (570)
                      +.+.+.+..+.+.... . ... ........|.....|+.....     +.+. ......+..... .+....++... +
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~~~~~f~~~-~~~~~~~~~~~~~~~~~~~pd~~~-~  391 (566)
T 3fim_B          314 LLLPAAFFVNSNQTFDNIFRDSSEFNVDLDQWTNTRTGPLTALIANHLAWLRL-PSNSSIFQTFPDPAAGPNSAHWET-I  391 (566)
T ss_dssp             EEECCEEEESCSCSSGGGGTCHHHHHHHHHHHHHHSCSGGGCCSCSEEEEECC-CTTCGGGGTSCCCSSSTTSCSEEE-E
T ss_pred             ccceEEEEeCCCcccchhhcChHHHHHHHHHHHhcCCCCcccChhhheeeecc-ccchhhhhhhccccccCCCCCEEE-E
Confidence            9877766554332111 0 000 000111234444444321110     0000 000000000000 00000111100 0


Q ss_pred             hHh--hh-cc-CCCceeeEEEEeecccccccEEEEecCCCCCCCCeeecCCCCCHhHHHHHHHHHHHHHHHHcCcccccc
Q 008331          386 VET--VN-SY-LNGTIRAGVIVEKIMGPRSTGHLRLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKF  461 (570)
Q Consensus       386 ~~~--~~-~~-~~~~~~~~~~~~~~~~p~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~  461 (570)
                      +..  .. .. .......+++...+.+|.|||+|+|+++||.+.|.|+++|+.++.|++.+.++++.+++++++++++.+
T Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~l~~P~SrG~V~L~s~dp~~~P~i~~~yl~~~~D~~~~~~~~~~~~~i~~~~~~~~~  471 (566)
T 3fim_B          392 FSNQWFHPAIPRPDTGSFMSVTNALISPVARGDIKLATSNPFDKPLINPQYLSTEFDIFTMIQAVKSNLRFLSGQAWADF  471 (566)
T ss_dssp             EESSCCCTTSCCCSSCCEEEEEEEESSCSCCBEEECSSSCTTSCCEEECCTTCSHHHHHHHHHHHHHHHHHHTSGGGTTT
T ss_pred             ecccchhhcccCCCCCCEEEEEEeecCCccceEEEecCCCCCCCceeccccCCCccHHHHHHHHHHHHHHHHhCcccCCc
Confidence            000  00 00 001122445666788999999999999999999999999999999999999999999999999888877


Q ss_pred             cCCCcchhHHhhhhccCCCCCCCC-CCCCCHHHHHHHHHhcccccccccccccCC------cccCCCCeEeccCCceEee
Q 008331          462 RYPDVSVQELIDLMVNIPTNLRPR-HVVGASISLEQFCRDTVMTIWHYHGGCQVD------RVVDRDYKVLGVDGLRVID  534 (570)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~i~~~~~~~~~~~~H~~GTc~MG------~VVD~~~rv~g~~nL~V~D  534 (570)
                      ...+                ..|+ ...++|++|++|+|+...+.+|++||||||      +|||++|||||++||||||
T Consensus       472 ~~~~----------------~~P~~~~~~sd~~~~~~ir~~~~t~~H~~GTc~Mg~~~~~~~VVD~~lrV~Gv~~LrVvD  535 (566)
T 3fim_B          472 VIRP----------------FDPRLRDPTDDAAIESYIRDNANTIFHPVGTASMSPRGASWGVVDPDLKVKGVDGLRIVD  535 (566)
T ss_dssp             EEEE----------------SSGGGSCTTCHHHHHHHHHHHCEECSCCBCTTCBCCTTCSSCSBCTTCBBTTCBSEEECS
T ss_pred             cccc----------------cCCCcccccchHHHHHHHhhcccccccccCccccCCcccCCccCCCCCeEccCCCcEEcc
Confidence            6444                4566 557899999999999999999999999998      7999999999999999999


Q ss_pred             ccCCCCCCCCchHHHHHHHHHHHHHHhhccc
Q 008331          535 GSTFYNSPGTNPQATCMMLGRYMGLRILQDR  565 (570)
Q Consensus       535 aSv~P~~~~~NP~lTi~Ala~r~a~~i~~~~  565 (570)
                      +||||+.+++||++|+||||||+||.|++++
T Consensus       536 aSv~P~~~~~n~~~~~~~iaekaAd~I~~~~  566 (566)
T 3fim_B          536 GSILPFAPNAHTQGPIYLVGKQGADLIKADQ  566 (566)
T ss_dssp             GGGCCSCCSSCTHHHHHHHHHHHHHHHHHTC
T ss_pred             cccCCCCCCcCcHHHHHHHHHHHHHHHhhcC
Confidence            9999999999999999999999999988753

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=100.00  E-value=1.1e-78  Score=656.03  Aligned_cols=505  Identities=41%  Similarity=0.734  Sum_probs=382.1

Q ss_pred             CcceeeecccCCCCCCcccEEEECCCCchhHHHHhhhccCeEEEEccCCCCCCCCCcccccccccccCCCC-CCCCCccc
Q 008331           25 PYYTFVKDATSAPLISYYDYIIVGGGTSGCPLAATLSQNATVLLLEKGGSPYENPNITDTGNFATTLLDPS-PTSPSQQF  103 (570)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~DvIIVGsG~aG~~~A~~La~g~~VlvLE~G~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  103 (570)
                      +.++|+.++.......+|||||||||+||+++|.+|+||.+|||||+|+....++....+..+...+.++. |.+.++..
T Consensus        10 ~~~~~~~~~~~~~~~~~yD~IIVGsG~AG~v~A~rLseg~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~t~~q~~   89 (536)
T 1ju2_A           10 SYLSFAYDATDLELEGSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKTPVERF   89 (536)
T ss_dssp             GGGGGEEEGGGSCSEEEEEEEEECCSTTHHHHHHHHTTTSCEEEECSSBCGGGSGGGGBGGGHHHHHHSCCCSSSSEEEE
T ss_pred             ccCccccCcccccccCcccEEEECccHHHHHHHHHHhcCCcEEEEecCCCcCCCcceecchhHhhhccCCCcCcCCCccc
Confidence            45677887777666778999999999999999999999999999999986533343344433433222111 45556666


Q ss_pred             ccCCcccccCCceeccccccCceeeeCCChhhhhhCC--CChhhhhhhhHHHHhhccCCCCCcchHHHHHHHHHHcCCCC
Q 008331          104 ISEDGVYNARARVLGGGSVINAGFYTRASLRYVREVG--WTESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLLEAGVLP  181 (570)
Q Consensus       104 ~~~~~~~~~~g~~lGG~s~~~~~~~~r~~~~~~~~~g--w~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~  181 (570)
                      ..++.+.+.+|++|||+|.+|+++|.|+.+.+++..|  |+++++++||+++|+.+.+.+...++...+.+++.++|+.+
T Consensus        90 ~~~~~~~~~rg~~lGGsS~in~~~~~R~~~~d~~~~G~~W~~~~~~p~~~~~e~~~~~~~~~~~~~~~~~~a~~~~G~~~  169 (536)
T 1ju2_A           90 VSEDGIDNVRGRVLGGTSIINAGVYARANTSIYSASGVDWDMDLVNQTYEWVEDTIVYKPNSQSWQSVTKTAFLEAGVHP  169 (536)
T ss_dssp             ECTTSCEEEEECBTTGGGGTSCCEECBCCTTSSTTSSSCCCHHHHHHHHHHHHHHHCBCCCCCHHHHHHHHHHHHTTCCC
T ss_pred             cCCCcceeecceeccccccccCeEEEeCCHHHHhhccCCCChHHHHHHHHhhhcccCCCCCCCcHHHHHHHHHHHcCCCC
Confidence            6777888899999999999999999999998877777  99999999999999988777777788888999999999866


Q ss_pred             CCCCCcCCCCcceeeeeEECCCCccccHHHhhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEe
Q 008331          182 YNGFTFDHIYGTKVSGTIFDEDGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACL  261 (570)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~  261 (570)
                      .++...+...++..+.+.++.+|.|+++..|++.+++.|++|+++++|++|+++++  ++.+++||++.+.+|+.+++++
T Consensus       170 ~~~~~~~~~~g~~~g~~~~~~~g~r~s~~~~~~~~~~~~~~v~~~~~v~~i~~~~~--~~~~~~GV~~~~~~g~~~~~~v  247 (536)
T 1ju2_A          170 NHGFSLDHEEGTRITGSTFDNKGTRHAADELLNKGNSNNLRVGVHASVEKIIFSNA--PGLTATGVIYRDSNGTPHQAFV  247 (536)
T ss_dssp             EEEECCBCCSEEEECEESBCTTSBBCCGGGGGGGSCTTTEEEEESCEEEEEEECCS--SSCBEEEEEEECTTSCEEEEEE
T ss_pred             CCCcccCCCCCceeeeEEECCCCeEecHHHhhhhhcCCCcEEEeCCEEEEEEECCC--CCCEEEEEEEEeCCCceEEEEe
Confidence            55443444444444444445678888877788878889999999999999999863  1238999999876777655532


Q ss_pred             cCCCCceEEEcCCccccHHHHHHhCCCChhhhhhcCCcccccCCccCcccccCCCceeeeccCCcccchhhhhhcccchh
Q 008331          262 NNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMNALFVPSARPVEVSLVQVVGITRFD  341 (570)
Q Consensus       262 ~~~aa~~VVLaaGa~~tp~LLl~SGiG~~~~l~~~gi~~~~~~p~VG~~l~dh~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (570)
                      +  ++|+||||||+|+||+||++|||||+++|+++||+++.++|.||+|||||+...+.+..+.+......+...+..  
T Consensus       248 ~--a~k~VILaaGa~~sp~lL~~SGig~~~~l~~~gi~~~~dlP~VG~NL~DH~~~~~~~~~~~~~~~~~~~~~~~~~--  323 (536)
T 1ju2_A          248 R--SKGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNPRNFINILPPNPIEPTIVTVLGISN--  323 (536)
T ss_dssp             E--EEEEEEECCHHHHHHHHHHHTTEECHHHHHHTTCCCSEECTTTTEEEECCEEEEEEECCSSCCCCCCCCEEEECS--
T ss_pred             c--cCCEEEEcCcccCCHHHHHHcCCCCHHHHHhcCCceEecCcccccchhcCcceeEEEEeCCCcccccchhhhHHH--
Confidence            2  479999999999999999999999999999999999999999999999999887777665443211111011100  


Q ss_pred             hhHhhhcCCccCcCccccccccccccccccCCCCCCChHHHHHHhHhhhccCCCceeeEEEEeecccccccEEEEe-cCC
Q 008331          342 SYIETASGLSLAPSWAQGLTRDYSSFLNKTDIPSLVTPETVAEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHLRL-RTL  420 (570)
Q Consensus       342 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~g~v~l-~~~  420 (570)
                      .|.....|. +...     ......     ++...             ...+.  ..+..+.+.+++|.|||+|+| +++
T Consensus       324 ~~~~~~~g~-~~~~-----~~~~~~-----~~~~~-------------~~~~~--~~~~~~~~~l~~P~SrG~V~L~~s~  377 (536)
T 1ju2_A          324 DFYQCSFSS-LPFT-----TPPFGF-----FPSSS-------------YPLPN--STFAHFASKVAGPLSYGSLTLKSSS  377 (536)
T ss_dssp             SEEEEEEEE-CCCS-----SCCBTT-----BSSSC-------------CCCCS--SCEEEEEEEESSCSCCEEEECSCSS
T ss_pred             HHHHcCCCC-CCCC-----hhhhee-----ecCcc-------------cCCCC--cceEEEeeecCCCCcceEEEeCCCC
Confidence            121111111 0000     000000     01000             01111  112345567789999999999 889


Q ss_pred             CCCCCCeeecCCCCCHhHHHHHHHHHHHHHHHHcCcccccccCCCc-chhHHhhhhccCCCCCCCCCCCCCHHHHHHHHH
Q 008331          421 DADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDV-SVQELIDLMVNIPTNLRPRHVVGASISLEQFCR  499 (570)
Q Consensus       421 d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~  499 (570)
                      ||.+.|.|+++|+.++.|++.+.++++.+++++++.+++.+...+. ..+.+.+...     ..|+. .++++++++|++
T Consensus       378 Dp~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~-----~~p~~-~~~d~~~~~~ir  451 (536)
T 1ju2_A          378 NVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDALKPYKVEDLPGVEGFNILGI-----PLPKD-QTDDAAFETFCR  451 (536)
T ss_dssp             CTTSCCEECCCTTCSHHHHHHHHHHHHHHHHHHTSGGGGGGCSSCCSTTCSCCBSSS-----CCCSC-TTCHHHHHHHHH
T ss_pred             CcccCceecccccCCccHHHHHHHHHHHHHHHHcCccchhhhccccccCCCcccccc-----CCCcc-cCCHHHHHHHHH
Confidence            9999999999999999999999999999999999988887764431 0000000000     02322 468999999999


Q ss_pred             hcccccccccccccCCcccCCCCeEeccCCceEeeccCCCCCCCCchHHHHHHHHHHHHHHhhccccC
Q 008331          500 DTVMTIWHYHGGCQVDRVVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLGRYMGLRILQDRDR  567 (570)
Q Consensus       500 ~~~~~~~H~~GTc~MG~VVD~~~rv~g~~nL~V~DaSv~P~~~~~NP~lTi~Ala~r~a~~i~~~~~~  567 (570)
                      ....+.+|++||||||+|||++|||||++||||||+||||+.+++||++|+||||||+|++|++++|+
T Consensus       452 ~~~~t~~H~~GTcrMG~VVD~~lrV~Gv~nLrVvDaSv~P~~~~~np~~t~~aiAer~A~~ii~~~~~  519 (536)
T 1ju2_A          452 ESVASYWHYHGGCLVGKVLDGDFRVTGINALRVVDGSTFPYTPASHPQGFYLMLGRYVGIKILQERSA  519 (536)
T ss_dssp             HHCEECSCCEESSCBTTTBCTTSBBTTCBTEEECSGGGCSSCSSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccCccccCcCccCCccEECCCCeEcCCCCeEEeecccCCCCCCcchHHHHHHHHHHHHHHHHHhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999988774

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=100.00  E-value=1.4e-78  Score=654.79  Aligned_cols=489  Identities=23%  Similarity=0.294  Sum_probs=352.3

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc--cCeEEEEccCCCCC-CCCCccccccccccc---CCCCCCCCCcccccCCccccc
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ--NATVLLLEKGGSPY-ENPNITDTGNFATTL---LDPSPTSPSQQFISEDGVYNA  112 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~--g~~VlvLE~G~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  112 (570)
                      +++|||||||+|.|||++|.||+|  +.+|||||+|+... .++....+..+...+   .+|.|.+.++. ..++.+.++
T Consensus        17 ~~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~~~~~~~~~~~~p~~~~~~~~~~~~w~~~t~~q~-~~~r~~~~~   95 (583)
T 3qvp_A           17 GRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDHAYETVELA-TNNQTALIR   95 (583)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSCCCTTSCHHHHBGGGTTTTTTSTTBCCEECCCCT-TTSCCCEEC
T ss_pred             CCCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCCCCCCCcceechhhHHhhcCCcccCCccccccC-CCCCeeecc
Confidence            568999999999999999999998  79999999998432 234444454444332   36777777765 577788999


Q ss_pred             CCceeccccccCceeeeCCChhhhhh------C-CCChhhhhhhhHHHHhhcc---------------CC----------
Q 008331          113 RARVLGGGSVINAGFYTRASLRYVRE------V-GWTESLVNSSYEWVEKKVA---------------HE----------  160 (570)
Q Consensus       113 ~g~~lGG~s~~~~~~~~r~~~~~~~~------~-gw~~~~l~~~~~~~~~~~~---------------~~----------  160 (570)
                      |||+|||+|.+|+|+|.|+.+.+++.      . +|+|+++.+||++.|....               ++          
T Consensus        96 rGk~LGGsS~iN~m~y~Rg~~~Dyd~W~~~g~~~gW~~~~~lpyf~k~E~~~~~~~~~~~~~~~~~~~~hG~~Gpl~v~~  175 (583)
T 3qvp_A           96 SGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVHAGP  175 (583)
T ss_dssp             CBCSTTGGGGTSCCBCCCCCHHHHHHHHHTSCCTTCSHHHHHHHHHHHEEECCCCHHHHHHTCCCCGGGSCSSSSEEEBC
T ss_pred             CceecCCcCcccceEEEeCCHHHHHHHHHhCCCCCCChhHHHHHHHHHHhccCCcchhhcccccCCccccCCCCCEEecC
Confidence            99999999999999999999865442      4 8999999999999987531               00          


Q ss_pred             C----CCcchHHHHHHHHHHcCCCCCCCCCcCCCCcceeeeeEECCCCccccHHH-hh-hhcCCCCeEEEecceEEEEEe
Q 008331          161 P----PMLQWQSAVRDGLLEAGVLPYNGFTFDHIYGTKVSGTIFDEDGHRHSAAD-LL-EYADPEKLTVYLRAVVQRIKF  234 (570)
Q Consensus       161 ~----~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~-~l-~~~~~~g~~i~~~~~V~~i~~  234 (570)
                      +    ...++...+.++++++|++...++......|+.........+|.|+++.. |+ +..+++|++|++++.|+||++
T Consensus       176 ~~~~~~~~~~~~~~~~a~~~~G~~~~~D~n~~~~~G~~~~~~t~~~~g~R~saa~ayL~p~~~r~NL~V~t~a~V~rIl~  255 (583)
T 3qvp_A          176 RDTGDDYSPIVKALMSAVEDRGVPTKKDFGCGDPHGVSMFPNTLHEDQVRSDAAREWLLPNYQRPNLQVLTGQYVGKVLL  255 (583)
T ss_dssp             CCCSSCBCTHHHHHHHHHHTTTCCBCCCTTSSCCCEEECCCBSBCTTCBBCCHHHHHTTTTTTCTTEEEECSCEEEEEEE
T ss_pred             CCCcccCCHHHHHHHHHHHHcCCCcCCCCCCCCCceecccceeEcCCCcEecHHHHHHHHhhcCCCcEEEcCCEEEEEEe
Confidence            1    12456678889999999864332221111222211122224678887765 66 466789999999999999999


Q ss_pred             cCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHHhCCCChhhhhhcCCcccccCCccCcccccC
Q 008331          235 TETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDN  314 (570)
Q Consensus       235 ~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGiG~~~~l~~~gi~~~~~~p~VG~~l~dh  314 (570)
                      ++.+ .+.+++||++.+.+|+.++++    ++|+||||||+|+||+|||+|||||+++|+++||+++.|+| ||+|||||
T Consensus       256 d~~~-~~~ra~GV~~~~~~G~~~~v~----A~kEVILsAGa~~SPqLL~lSGIGp~~~L~~~GI~vv~dLP-VG~NLqDH  329 (583)
T 3qvp_A          256 SQNG-TTPRAVGVEFGTHKGNTHNVY----AKHEVLLAAGSAVSPTILEYSGIGMKSILEPLGIDTVVDLP-VGLNLQDQ  329 (583)
T ss_dssp             ECSS-SSCEEEEEEEESSTTCEEEEE----EEEEEEECSCTTTHHHHHHHTTBSCHHHHGGGTCCCSBCCC-TTCCBBCC
T ss_pred             ccCC-CCCEEEEEEEEecCCcEEEEE----ECCEEEEeCCccCCHHHHHHcCCCCHHHHHhCCCCceeeCc-cccchhhC
Confidence            8421 123999999986688888887    77899999999999999999999999999999999999999 99999999


Q ss_pred             CCceeeeccCCccc--------chhhhhhccc--chhhhHhhhcCCccCcCccccccccccccccccCCCCCCChHHHHH
Q 008331          315 PMNALFVPSARPVE--------VSLVQVVGIT--RFDSYIETASGLSLAPSWAQGLTRDYSSFLNKTDIPSLVTPETVAE  384 (570)
Q Consensus       315 ~~~~~~~~~~~~~~--------~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (570)
                      +.+.+.+....+..        .++...++..  ....|.....+.     |... ....+.+        .........
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~--------~~~~~~~~~  395 (583)
T 3qvp_A          330 TTATVRSRITSAGAGQGQAAWFATFNETFGDYSEKAHELLNTKLEQ-----WAEE-AVARGGF--------HNTTALLIQ  395 (583)
T ss_dssp             EEEEEEEEECGGGCSBCEEEEEEEHHHHHGGGHHHHHHHHHHCHHH-----HHHH-HHHTTSC--------SCHHHHHHH
T ss_pred             ccceEEEEecCCccccccccccccHHHhhccchHHHHHHHHhhcch-----hhcc-cccccCc--------cccHHHHhh
Confidence            98887776543210        0111110000  000011100000     0000 0000000        000111111


Q ss_pred             HhHh---h--hccCC-Cc----eeeEEEEeecccccccEEEEecCCCCCCCCee-ecCCCCCHhHHHHHHHHHHHHHHHH
Q 008331          385 AVET---V--NSYLN-GT----IRAGVIVEKIMGPRSTGHLRLRTLDADDNPSV-TFNYFQEPEDLVRCVQGMRTIIDVL  453 (570)
Q Consensus       385 ~~~~---~--~~~~~-~~----~~~~~~~~~~~~p~s~g~v~l~~~d~~~~p~i-~~~~~~~~~D~~~~~~~~~~~~~i~  453 (570)
                      +...   .  ...+. ..    .....+.....+|.|||+|+|+++||.+.|.| +++|+.++.|++.+.++++.+++++
T Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~SrG~v~l~s~dp~~~P~i~~~~yl~~~~D~~~~~~~~~~~~~i~  475 (583)
T 3qvp_A          396 YENYRDWIVNHNVAYSELFLDTAGVASFDVWDLLPFTRGYVHILDKDPYLHHFAYDPQYFLNELDLLGQAAATQLARNIS  475 (583)
T ss_dssp             HHHHHHHHHHSCCEEEEEEEECTTSEEEEEEESSCCCCBEEEESSSCGGGCCEEEECCTTCSHHHHHHHHHHHHHHHHHH
T ss_pred             hccchhhhccCCCCcceeeeccCCCceeeeeecccCCceEEEecCCCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            1000   0  00000 00    00112223347899999999999999999999 9999999999999999999999999


Q ss_pred             cCcccccccCCCcchhHHhhhhccCCCCCCCCCC---CCCHHHHHHHHHhcccccccccccccCC-----cccCCCCeEe
Q 008331          454 NSRALSKFRYPDVSVQELIDLMVNIPTNLRPRHV---VGASISLEQFCRDTVMTIWHYHGGCQVD-----RVVDRDYKVL  525 (570)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~~~~i~~~~~~~~~~~~H~~GTc~MG-----~VVD~~~rv~  525 (570)
                      ++.+++.+...+                ..|+..   .++|++|++|+|....+.+|++||||||     +|||++||||
T Consensus       476 ~~~~~~~~~~~~----------------~~pg~~~~~~~sd~~~~~~~r~~~~t~~H~~GTc~Mg~~~~~~VVD~~lrV~  539 (583)
T 3qvp_A          476 NSGAMQTYFAGE----------------TIPGDNLAYDADLSAWTEYIPYHFRPNYHGVGTCSMMPKEMGGVVDNAARVY  539 (583)
T ss_dssp             TSTTHHHHEEEE----------------EESGGGSCTTCCHHHHHHHGGGSCEECSCCBCTTCBSCGGGTCSBCTTCBBT
T ss_pred             hCcchhhccccc----------------cCCCcccccCCCHHHHHHHHHhccCCCcCCCCceeCCCCCCCceECCCCeEe
Confidence            988777665333                234432   3689999999999999999999999999     7999999999


Q ss_pred             ccCCceEeeccCCCCCCCCchHHHHHHHHHHHHHHhhcc
Q 008331          526 GVDGLRVIDGSTFYNSPGTNPQATCMMLGRYMGLRILQD  564 (570)
Q Consensus       526 g~~nL~V~DaSv~P~~~~~NP~lTi~Ala~r~a~~i~~~  564 (570)
                      |++||||||+||||+.+++||++|+||||||+||+|+++
T Consensus       540 Gv~~LrVvDaSv~P~~~~~n~~~t~~aiaeraAd~I~~~  578 (583)
T 3qvp_A          540 GVQGLRVIDGSIPPTQMSSHVMTVFYAMALKISDAILED  578 (583)
T ss_dssp             TCBSEEECSTTCCSSCCSSCSHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCeEEeecccCCCCCCcCcHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999988764

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=100.00  E-value=3.8e-76  Score=636.68  Aligned_cols=492  Identities=21%  Similarity=0.268  Sum_probs=350.0

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-c-CeEEEEccCCCC-CCCCCccccccccccc---CCCCCCCCCcccccCCccc--
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-N-ATVLLLEKGGSP-YENPNITDTGNFATTL---LDPSPTSPSQQFISEDGVY--  110 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g-~~VlvLE~G~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--  110 (570)
                      .++|||||||+|.|||++|.||+| + .+|||||+|+.. ...+....|..+....   .+|.|.+.    +.++...  
T Consensus         4 ~~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~~~~~~~~i~~P~~~~~~~~~~~dW~y~t~----~~~r~~~~~   79 (577)
T 3q9t_A            4 GSHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYDWAYKTT----MVRRDDYER   79 (577)
T ss_dssp             TCEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCSCGGGCHHHHCGGGGGGGTTSTTBCCEEEE----EEEETTEEE
T ss_pred             CCcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCCCCCCCceEECchhhhhccCCCcccceEEE----ECCcccccc
Confidence            457999999999999999999999 6 799999999863 2223333444333222   24555443    2333344  


Q ss_pred             ----ccCCceeccccccCceeeeCCChhhhhh------CCCChhhhhhhhHHHHhhccCC----------C---------
Q 008331          111 ----NARARVLGGGSVINAGFYTRASLRYVRE------VGWTESLVNSSYEWVEKKVAHE----------P---------  161 (570)
Q Consensus       111 ----~~~g~~lGG~s~~~~~~~~r~~~~~~~~------~gw~~~~l~~~~~~~~~~~~~~----------~---------  161 (570)
                          ++|||++||+|.+|+|+|.|+.+.+++.      .+|+|+++.+||++.|......          .         
T Consensus        80 ~~~~~~rGkvLGGsS~iN~m~~~rg~~~dyd~W~~~G~~gW~~~~~lpyf~k~e~~~~~~~~~~~~~~~hG~~Gpl~v~~  159 (577)
T 3q9t_A           80 IEKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGKEWTWDPLVPYLRKSATYHDDPRLYSPELEKIGGGGPIPISH  159 (577)
T ss_dssp             EEEEECCBCSTTGGGGTSCCEECCCCHHHHHTTHHHHCGGGSHHHHHHHHHHTEEEECTTCCSCGGGGGGCCSCSEEEEE
T ss_pred             ccccccccccccCccccCceEeccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCCccccCCccccCCCCCCEEeeC
Confidence                8999999999999999999999865442      6799999999999987643211          0         


Q ss_pred             -C----CcchHHHHHHHHHHcCCCCCCCCCcCCCCcceeeeeEECCCCccccHHHhhhhcCCCCeEEEecceEEEEEecC
Q 008331          162 -P----MLQWQSAVRDGLLEAGVLPYNGFTFDHIYGTKVSGTIFDEDGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTE  236 (570)
Q Consensus       162 -~----~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~~l~~~~~~g~~i~~~~~V~~i~~~~  236 (570)
                       .    ..++...+.+++.++|++...++......+....... ..+|.|+++..|+  ..++|++|++++.|+||++++
T Consensus       160 ~~~~~~~~~~~~~~~~a~~~~G~~~~~d~n~~~~~G~~~~~~~-~~~g~R~s~~~~l--~~r~Nl~v~~~a~v~ri~~~~  236 (577)
T 3q9t_A          160 AELIDEMAPFRENLTKAWKSMGQPLIENIYDGEMDGLTHCCDT-IYRGQRSGSFLFV--KNKPNITIVPEVHSKRLIINE  236 (577)
T ss_dssp             CCCCGGGHHHHHHHHHHHHHTTCCBCSCCSSSCCCEEEECEES-EETTEECCGGGGS--SSCTTEEEECSEEEEEEEEET
T ss_pred             CCCCcccchHHHHHHHHHHHcCCCcCCCCCCCCcCeEEeecce-ecCCeEeeHHHHH--hcCCCeEEEcCcEEEEEEEeC
Confidence             0    0125566788889999864322211111121111111 1357777665443  567899999999999999984


Q ss_pred             CCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHHhCCCChhhhhhcCCcccccCCccCcccccCCC
Q 008331          237 TGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPM  316 (570)
Q Consensus       237 ~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGiG~~~~l~~~gi~~~~~~p~VG~~l~dh~~  316 (570)
                      .+   .+++||++.+.+|+.++++    ++|+||||||+|+||+|||+|||||+++|+++||+++.|+|.||+|||||+.
T Consensus       237 ~~---~~a~GV~~~~~~g~~~~v~----A~keVILsaGa~~sp~lL~~SGIGp~~~L~~~GI~vv~dlP~VG~nl~DH~~  309 (577)
T 3q9t_A          237 AD---RTCKGVTVVTAAGNELNFF----ADREVILSQGVFETPKLLMLSGIGPTRELSRHGINTIVDSRHVGQNLMDHPG  309 (577)
T ss_dssp             TT---TEEEEEEEEETTSCEEEEE----EEEEEEECSHHHHHHHHHHHTTEECHHHHHTTTCCCSEECTTTTEEEBCCEE
T ss_pred             CC---CEEEEEEEEeCCCcEEEEE----eeeEEEEcccccCChHHHHHcCCCCHHHHHHcCCCeeccCchhhhhhhcCcc
Confidence            21   2999999997668888877    6799999999999999999999999999999999999999999999999998


Q ss_pred             ceeeeccCCcccch-h-h--hhhcccchhhhHhhhcCCccCcCcccccccccccccc--------------------cc-
Q 008331          317 NALFVPSARPVEVS-L-V--QVVGITRFDSYIETASGLSLAPSWAQGLTRDYSSFLN--------------------KT-  371 (570)
Q Consensus       317 ~~~~~~~~~~~~~~-~-~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------------------~~-  371 (570)
                      +.+.+..+.+.... . .  ..........|.....|+.-. ...    ...++...                    .. 
T Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gpl~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (577)
T 3q9t_A          310 VPFVLRVKDGFGMDDVLLRHGPKRDAVVSAYNKNRSGPVGS-GLL----ELVGFPRIDKYLEKDAEYRKAKAANGGKDPF  384 (577)
T ss_dssp             EEEEEEECTTSSSHHHHTSCSHHHHHHHHHHHHHSCSGGGC-CSE----EEEEECCCHHHHTTCHHHHHHHHHTTTSCSS
T ss_pred             eeEEEEeCCCCccchhhhcchhHHHHHHHHHHhcCCCCccc-chh----heeEEeecChhhhcchhhhhhhhcccccccc
Confidence            88777655432110 0 0  000001122344433442111 000    00000000                    00 


Q ss_pred             CCCCCCChHHH--HHHhHhhh-ccC-CCceeeEEEEeecccccccE-EEEecCCCCCCCCeeecCCCCCHhHHHHHHHHH
Q 008331          372 DIPSLVTPETV--AEAVETVN-SYL-NGTIRAGVIVEKIMGPRSTG-HLRLRTLDADDNPSVTFNYFQEPEDLVRCVQGM  446 (570)
Q Consensus       372 ~~~~~~~~~~~--~~~~~~~~-~~~-~~~~~~~~~~~~~~~p~s~g-~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~  446 (570)
                      .+...+..++.  ..+..... ..+ ......+++...+.+|.||| +|+|+++||.+.|.|+++|+.++.|++.+.+++
T Consensus       385 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~SrGG~V~L~S~dp~~~P~i~p~yl~~~~D~~~~~~~~  464 (577)
T 3q9t_A          385 SPLGQPHFELDFVCMFGTAFQWHFPTPKTGDHLTVVVDLVRPISDPGEVTLNSADPFQQPNINLNFFANDLDIIAMREGI  464 (577)
T ss_dssp             CTTSCCSEEEEEESSCCGGGCSSSCCCSSSEEEEEEEEESSCCSCCEEEECSCSCTTSCCEEECCTTCSHHHHHHHHHHH
T ss_pred             CCCCCceEEEEecccccccccccccCCCCCCEEEEEEEeeeccccCCEEEeCCCCCCCCceEecCcCCCccHHHHHHHHH
Confidence            00000000000  00000000 000 01123456667788999999 999999999999999999999999999999999


Q ss_pred             HHHHHHH-cCcccccccCCCcchhHHhhhhccCCCCCCCCCCCCCHHHHHHHHHhcccccccccccccCC-----cccCC
Q 008331          447 RTIIDVL-NSRALSKFRYPDVSVQELIDLMVNIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVD-----RVVDR  520 (570)
Q Consensus       447 ~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~H~~GTc~MG-----~VVD~  520 (570)
                      +.+++++ ++++++.+...+                ..|+...++|++|++|+|+...+.+|++||||||     +|||+
T Consensus       465 ~~~~~i~~~~~~~~~~~~~e----------------~~p~~~~~sd~~~~~~ir~~~~t~~H~~GTc~Mg~~~~~~VVD~  528 (577)
T 3q9t_A          465 RFSYDLLFKGEGFKDLVESE----------------YPWEMPLDSDKEMHRAVLDRCQTAFHPTGTARLSKNIDQGVVDP  528 (577)
T ss_dssp             HHHHHHHHHSTTGGGTEEEE----------------ESSCCCTTCHHHHHHHHHHHCEECSCCBCTTCBCSSTTTCSBCT
T ss_pred             HHHHHHHHhChhhhhccccc----------------cCCCCCcCCHHHHHHHHHhccccccccccceecCCCCCCceECC
Confidence            9999999 888888776544                4566667899999999999999999999999999     69999


Q ss_pred             CCeEeccCCceEeeccCCCCCCCCchHHHHHHHHHHHHHHhhccc
Q 008331          521 DYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLGRYMGLRILQDR  565 (570)
Q Consensus       521 ~~rv~g~~nL~V~DaSv~P~~~~~NP~lTi~Ala~r~a~~i~~~~  565 (570)
                      +|||||++||||||+||||+.+++||++|+||||||+||.|+++.
T Consensus       529 ~lrV~Gv~~LrVvDaSv~P~~~~~n~~a~~~~iaekaAd~I~~~~  573 (577)
T 3q9t_A          529 KLKVHGIKKLRVADASVIPIIPDCRIQNSVYAVGEKCADMIKAEH  573 (577)
T ss_dssp             TCBBTTCBSEEECSGGGCSSCCSSCCHHHHHHHHHHHHHHHHHHC
T ss_pred             CCeEeCCCCcEEeecccccCCCCCccHHHHHHHHHHHHHHHHhhh
Confidence            999999999999999999999999999999999999999887653

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=100.00  E-value=1.2e-73  Score=622.14  Aligned_cols=494  Identities=21%  Similarity=0.248  Sum_probs=352.2

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc--cCeEEEEccCCCCCCCCCcc-ccccccccc---CCCCCCCCCcccccCCccccc
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ--NATVLLLEKGGSPYENPNIT-DTGNFATTL---LDPSPTSPSQQFISEDGVYNA  112 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~--g~~VlvLE~G~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  112 (570)
                      ..+||+||||+|.+|+++|.+|++  |.+|+|||+|.....++... .|..+...+   .+|.|.+.+  .+.++.+.+.
T Consensus        22 ~~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~~~~~~~~~~p~~~~~~~~~~~~w~~~t~p--~~~~~~~~~~   99 (587)
T 1gpe_A           22 GKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTTVDQNYLTVP--LINNRTNNIK   99 (587)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCCTTSCHHHHCGGGTTTTTTSTTBCCEECCC--CTTSCCCEEC
T ss_pred             cccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCccCCCcccccChhhHhhccCCcccccccccc--CCCCceeeee
Confidence            457999999999999999999999  79999999998764333333 343332222   245554444  4566788899


Q ss_pred             CCceeccccccCceeeeCCChhhhhh-------CCCChhhhhhhhHHHHhhccC-----------CC-------------
Q 008331          113 RARVLGGGSVINAGFYTRASLRYVRE-------VGWTESLVNSSYEWVEKKVAH-----------EP-------------  161 (570)
Q Consensus       113 ~g~~lGG~s~~~~~~~~r~~~~~~~~-------~gw~~~~l~~~~~~~~~~~~~-----------~~-------------  161 (570)
                      +|++|||+|.+|+|+|.|+.+.+++.       .+|+|++++|||+++|+....           .+             
T Consensus       100 rGk~lGGsS~in~~~~~R~~~~D~d~W~~~~G~~gW~~~~l~pyf~k~E~~~~~~~~~~~~G~~~~~~~~g~~Gpl~v~~  179 (587)
T 1gpe_A          100 AGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTVQSGA  179 (587)
T ss_dssp             CBCSTTGGGGTSCCEECCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHTEEECCCCHHHHHHTCCCCGGGCCBSSSEEEBC
T ss_pred             ccccccccccccceEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcccCCcccccccccccCccccCCCCCEEEcc
Confidence            99999999999999999999964432       479999999999999986542           10             


Q ss_pred             -----CCcchHHHHHHHHHHcCCCCCCCCCcCCCCcceeeeeEECCCCccccHHH-hh-hhcCCCCeEEEecceEEEEEe
Q 008331          162 -----PMLQWQSAVRDGLLEAGVLPYNGFTFDHIYGTKVSGTIFDEDGHRHSAAD-LL-EYADPEKLTVYLRAVVQRIKF  234 (570)
Q Consensus       162 -----~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~-~l-~~~~~~g~~i~~~~~V~~i~~  234 (570)
                           ...+..+.+.++++++|++....+......++..+......+|.|+++.. |+ +.+++.|++|++++.|++|++
T Consensus       180 ~~~~~~~~~~~~~~~~a~~~~G~~~~~d~n~~~~~G~~~~~~~~~~~g~R~sa~~~~l~~~~~~~nl~i~~~~~v~~l~~  259 (587)
T 1gpe_A          180 RDNGQPWSPIMKALMNTVSALGVPVQQDFLCGHPRGVSMIMNNLDENQVRVDAARAWLLPNYQRSNLEILTGQMVGKVLF  259 (587)
T ss_dssp             CCCSSCBCTHHHHHHHHHHHTTCCBSCCTTSSCCCEEECCEESBCTTCCBCCHHHHHTTTTTTCTTEEEEESCEEEEEEE
T ss_pred             CCCcCCCCHHHHHHHHHHHHcCCCcCCCCCCCCCCEEEecceEECCCCcccCHHHHHHHHhhcCCCcEEEcCCEEEEEEE
Confidence                 12445678899999999875433322112222221111124678888765 77 466788999999999999999


Q ss_pred             cCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHHhCCCChhhhhhcCCcccccCCccCcccccC
Q 008331          235 TETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDN  314 (570)
Q Consensus       235 ~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGiG~~~~l~~~gi~~~~~~p~VG~~l~dh  314 (570)
                      ++++ ++.+++||++.+.+|+.++++    ++|+||||||+|+||+|||+|||||+++|+++||+++.|+| ||+||+||
T Consensus       260 ~~~~-~~~~~~GV~~~~~~g~~~~v~----A~k~VILaaG~~~sp~lL~~SGIGp~~~L~~~gI~vv~dlP-VG~nL~DH  333 (587)
T 1gpe_A          260 KQTA-SGPQAVGVNFGTNKAVNFDVF----AKHEVLLAAGSAISPLILEYSGIGLKSVLDQANVTQLLDLP-VGINMQDQ  333 (587)
T ss_dssp             EEET-TEEEEEEEEEEEETTEEEEEE----EEEEEEECSCTTTHHHHHHHTTEECHHHHHHTTCCCSEECC-TTCSBBCC
T ss_pred             CCCC-CCCEEEEEEEEeCCCcEEEEE----ecccEEEccCCCCCHHHHHhCCCCCHHHHHhCCCCeEEeCC-CCcchhcC
Confidence            8531 113899999986678877776    55999999999999999999999999999999999999999 99999999


Q ss_pred             CCceeeeccCCcccchhhhhhccc-chhhhHhhhcCCccCcCcccccccccccccccc--CC--CCCC--ChHHHHHHhH
Q 008331          315 PMNALFVPSARPVEVSLVQVVGIT-RFDSYIETASGLSLAPSWAQGLTRDYSSFLNKT--DI--PSLV--TPETVAEAVE  387 (570)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~--~~~~~~~~~~  387 (570)
                      +...+.+..+.+... ........ ....|.....|.....      ......+....  ..  ....  .+.+.. .+.
T Consensus       334 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~G~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  405 (587)
T 1gpe_A          334 TTTTVSSRASSAGAG-QGQAVFFANFTETFGDYAPQARDLL------NTKLDQWAEETVARGGFHNVTALKVQYEN-YRN  405 (587)
T ss_dssp             EEEEEEEEECGGGCS-BCEEEEEEEHHHHHGGGHHHHHHHH------HHSHHHHHHHHHHTTSCSCHHHHHHHHHH-HHH
T ss_pred             cccceEEEeCCCccc-ccchHHHHHHHHHHHhCCCCCcccc------ccceeeEeecccccccccccccccccHHH-Hhh
Confidence            988877665533210 00000000 0011221111110000      00000000000  00  0000  011111 111


Q ss_pred             hh-h-ccCC-C----ceeeEEEEeecccccccEEEEecCCCCCCCC-eeecCCCCCHhHHHHHHHHHHHHHHHHcCcccc
Q 008331          388 TV-N-SYLN-G----TIRAGVIVEKIMGPRSTGHLRLRTLDADDNP-SVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALS  459 (570)
Q Consensus       388 ~~-~-~~~~-~----~~~~~~~~~~~~~p~s~g~v~l~~~d~~~~p-~i~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~  459 (570)
                      .. . ..+. .    ....+.+...+.+|.|||+|+|+++|+++.| .|+++|+.++.|++.++++++.+++++++.+++
T Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~srG~V~L~s~dp~~~P~~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~  485 (587)
T 1gpe_A          406 WLLDEDVAFAELFMDTEGKINFDLWDLIPFTRGSVHILSSDPYLWQFANDPKFFLNEFDLLGQAAASKLARDLTSQGAMK  485 (587)
T ss_dssp             HHHHSCCEEEEEEEECTTEEEEEEEESSCCCCBEEEESSSCGGGTCEEEECCTTSSHHHHHHHHHHHHHHHHHHTSTTHH
T ss_pred             hccCCCCcceeeeecCCCcEEEEEEecCCccceeEEeCCCCcccCccEeecccCCChHHHHHHHHHHHHHHHHHcCcchh
Confidence            00 0 0100 0    0012344556778999999999999999999 999999999999999999999999999998877


Q ss_pred             cccCCCcchhHHhhhhccCCCCCCCCCCC---CCHHHHHHHHHhcccccccccccccCC-----cccCCCCeEeccCCce
Q 008331          460 KFRYPDVSVQELIDLMVNIPTNLRPRHVV---GASISLEQFCRDTVMTIWHYHGGCQVD-----RVVDRDYKVLGVDGLR  531 (570)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~---~~~~~i~~~~~~~~~~~~H~~GTc~MG-----~VVD~~~rv~g~~nL~  531 (570)
                      .+...+                ..|+...   +++++|++|++....+.+|++||||||     +|||++|||||++|||
T Consensus       486 ~~~~~~----------------~~pg~~~~~~~sd~~~~~~ir~~~~t~~H~~GTcrMG~~~~~sVVD~~lrV~Gv~nLr  549 (587)
T 1gpe_A          486 EYFAGE----------------TLPGYNLVQNATLSQWSDYVLQNFRPNWHAVSSCSMMSRELGGVVDATAKVYGTQGLR  549 (587)
T ss_dssp             HHEEEE----------------EESGGGSCTTCCHHHHHHHHHHSCEECSCCBCTTCBSCGGGTCSBCTTCBBTTCBSEE
T ss_pred             hhcccc----------------cCCCccccCCCCHHHHHHHHHHhcCcccCccCccccCCCCCCceECCCCEEECCCCcE
Confidence            665332                2343323   789999999999988999999999999     5999999999999999


Q ss_pred             EeeccCCCCCCCCchHHHHHHHHHHHHHHhhcc
Q 008331          532 VIDGSTFYNSPGTNPQATCMMLGRYMGLRILQD  564 (570)
Q Consensus       532 V~DaSv~P~~~~~NP~lTi~Ala~r~a~~i~~~  564 (570)
                      |||+||||+.+++||++|+||||+|+||+|+++
T Consensus       550 VvDaSv~P~~~~~Np~~ti~aiAeraAd~I~~~  582 (587)
T 1gpe_A          550 VIDGSIPPTQVSSHVMTIFYGMALKVADAILDD  582 (587)
T ss_dssp             ECSTTCCSSCCSSCSHHHHHHHHHHHHHHHHHH
T ss_pred             EeeeccCCCCCCcchHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999988865

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=100.00  E-value=3.4e-72  Score=608.20  Aligned_cols=470  Identities=23%  Similarity=0.327  Sum_probs=345.6

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc--cCeEEEEccCCCCCCCCCcccccccccc---cCCCCCCCCCcccccCCcccccC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ--NATVLLLEKGGSPYENPNITDTGNFATT---LLDPSPTSPSQQFISEDGVYNAR  113 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~--g~~VlvLE~G~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  113 (570)
                      ..+|||||||||+||+++|.||+|  +.||||||+|+.... +....|..+...   ..+|.|.+.++..+.++.+.+.+
T Consensus        15 ~~~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~~~~-~~~~~p~~~~~~~~~~~dw~~~t~p~~~~~~~~~~~~r   93 (526)
T 3t37_A           15 APNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPTD-PDIWNPAAWPALQGRSYDWDYRTEAQAGTAGRAHHWAR   93 (526)
T ss_dssp             --CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBCCCC-GGGGSGGGGGGTTTSTTBCCEECCCBGGGTTBCCEECC
T ss_pred             CCCeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCCCCC-cchhChhhHhhccCCccccCccccccCCCCCCeEeccC
Confidence            458999999999999999999998  689999999986432 333344433322   22577888888888889999999


Q ss_pred             CceeccccccCceeeeCCChhhhhh-------CCCChhhhhhhhHHHHhhccCCC----------------CCcchHHHH
Q 008331          114 ARVLGGGSVINAGFYTRASLRYVRE-------VGWTESLVNSSYEWVEKKVAHEP----------------PMLQWQSAV  170 (570)
Q Consensus       114 g~~lGG~s~~~~~~~~r~~~~~~~~-------~gw~~~~l~~~~~~~~~~~~~~~----------------~~~~~~~~~  170 (570)
                      |++|||+|.+|+++|.|+.+.+|+.       .+|+|+++.+||++.|.......                ...++.+.+
T Consensus        94 G~~lGGsS~in~~~~~R~~~~Dfd~w~~~~~~~~w~~~~~~pyf~~~E~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~  173 (526)
T 3t37_A           94 GRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDELLPVFQAIEDHPLGGDGIHGKGGPLPIHLPADEVSPLARAF  173 (526)
T ss_dssp             BCBTTGGGGTSCCBCCCCCHHHHHHHHHHHSCGGGSHHHHHHHHHHHEECTTTTSSSSCSSCSEECBCCSTTSCHHHHHH
T ss_pred             ccEECcHHHHhhCEEecCCHHHHHHHHHhcCCCCCChhhhhhhhhhhhhccCCCccccCcCCCcCcccccccCCHHHHHH
Confidence            9999999999999999999965432       46999999999999997543211                124567788


Q ss_pred             HHHHHHcCCCCCCCCCcCCCCcceeeeeEECCCCccccHHH-hh-h-hcCCCCeEEEecceEEEEEecCCCCCCCeEEEE
Q 008331          171 RDGLLEAGVLPYNGFTFDHIYGTKVSGTIFDEDGHRHSAAD-LL-E-YADPEKLTVYLRAVVQRIKFTETGRAKPTAHCV  247 (570)
Q Consensus       171 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~-~l-~-~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV  247 (570)
                      .++...+|++...........++...... ...|.|.+... ++ + ...+.|++|++++.|++|+++++     +++||
T Consensus       174 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-~~~g~r~s~~~~~~~~~~~~r~nl~v~~~~~v~~i~~~~~-----~a~gv  247 (526)
T 3t37_A          174 IEAGASLGLPRLEGHNSGEMIGVTPNSLN-IRDGRRVTAADAWLTKAVRGRKNLTILTGSRVRRLKLEGN-----QVRSL  247 (526)
T ss_dssp             HHHHHHTTCCBCSSSCSSCCBSBCCCCBC-EETTEECCHHHHHSCHHHHTCTTEEEECSCEEEEEEEETT-----EEEEE
T ss_pred             HHHHHHcCCCcccCCCCCccccccccccc-ccCCcccccccccccccccCCCCeEEEeCCEEEEEEecCC-----eEEEE
Confidence            89999999865433222221222111111 13566666544 44 3 45688999999999999999887     99999


Q ss_pred             EEEecCCceEEEEecCCCCceEEEcCCccccHHHHHHhCCCChhhhhhcCCcccccCCccCcccccCCCceeeec-cCCc
Q 008331          248 TFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMNALFVP-SARP  326 (570)
Q Consensus       248 ~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGiG~~~~l~~~gi~~~~~~p~VG~~l~dh~~~~~~~~-~~~~  326 (570)
                      ++.+ +++...+.     +|+||||||+|+||+|||+|||||+++|+++||+++.++|.||+||+||+.....+. ...+
T Consensus       248 ~~~~-~~~~~~~~-----a~~VILsAGai~SP~LLl~SGig~~~~l~~~gi~vv~dlp~VG~nl~DH~~~~~~~~~~~~~  321 (526)
T 3t37_A          248 EVVG-RQGSAEVF-----ADQIVLCAGALESPALLMRSGIGPHDVLDAAGVGCLIDMPDIGRNLQDHLLGAGNLYAARKP  321 (526)
T ss_dssp             EEEE-TTEEEEEE-----EEEEEECSHHHHHHHHHHHTTEECHHHHHHHTCCCSEECTTTTCSBBCCEEEEEEEEEESSC
T ss_pred             EEEe-cCceEEEe-----ecceEEcccccCCcchhhhccCCchhhhhccCCCeEecCCccccccccccccceeEEeccCC
Confidence            9986 44445553     799999999999999999999999999999999999999999999999986544332 2222


Q ss_pred             ccchhhhhhcccchhhhHhhhcCCccCcCccccccccccccccccCCCCCCChHHHHHHhHhhhccC-CCceeeEEEEee
Q 008331          327 VEVSLVQVVGITRFDSYIETASGLSLAPSWAQGLTRDYSSFLNKTDIPSLVTPETVAEAVETVNSYL-NGTIRAGVIVEK  405 (570)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  405 (570)
                      .......   ......|...  .. +.......+...++..     +...             ..++ ......+.+...
T Consensus       322 ~~~~~~~---~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~-----~~~~-------------~~~~~~~~~~~~~~~~~  377 (526)
T 3t37_A          322 VPPSRLQ---HSESMAYMRA--DS-FTAAGQPEIVVGCGVA-----PIVS-------------ESFPAPAAGSAYSLLFG  377 (526)
T ss_dssp             CCCCSSC---SEEEEEEECS--SC-SSCCSSCCEEEEEESS-----CCCC-------------TTSCCCCTTSEEEEEEE
T ss_pred             cchHhhc---chhhhhhhhc--cc-ccccCCcceeeecccc-----cccc-------------cccccccCCcceeeecc
Confidence            1100000   0000011100  00 0000000000000000     0000             0000 011123445566


Q ss_pred             cccccccEEEEecCCCCCCCCeeecCCCCCHhHHHHHHHHHHHHHHHHcCcccccccCCCcchhHHhhhhccCCCCCCCC
Q 008331          406 IMGPRSTGHLRLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLMVNIPTNLRPR  485 (570)
Q Consensus       406 ~~~p~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  485 (570)
                      +.+|.|||+|+++++|+.+.|.|+++|+.++.|.+.++++++.+++++.+..+..+...+                ..|+
T Consensus       378 l~~p~srG~v~~~s~dp~~~p~i~~~~~~~~~d~~~~~~~~~~~r~i~~~~~~~~~~~~~----------------~~pg  441 (526)
T 3t37_A          378 ITHPTSRGSVRISGPELGDRLIIDPAYLQTGRDRERFRRALEASRTIGHRDELAGWRERE----------------LLPG  441 (526)
T ss_dssp             ESSCCCCBEEECSSSSTTSCCEEECCTTCSHHHHHHHHHHHHHHHHHHTCGGGTTTEEEE----------------CSSC
T ss_pred             ccCccccCcceeccCCCccCceeccccCCCHHHHHHHHHHHHHHHHHHcChhhhhccccc----------------cCCC
Confidence            789999999999999999999999999999999999999999999999988777766544                5666


Q ss_pred             CCCCCHHHHHHHHHhcccccccccccccCC----cccCCCCeEeccCCceEeeccCCCCCCCCchHHHHHHHHHHHHHHh
Q 008331          486 HVVGASISLEQFCRDTVMTIWHYHGGCQVD----RVVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLGRYMGLRI  561 (570)
Q Consensus       486 ~~~~~~~~i~~~~~~~~~~~~H~~GTc~MG----~VVD~~~rv~g~~nL~V~DaSv~P~~~~~NP~lTi~Ala~r~a~~i  561 (570)
                      . ..+++++++|++....+.+|++||||||    +|||++|||||++|||||||||||+++++||++||||||||+||+-
T Consensus       442 ~-~~~~~~~~~~ir~~~~t~~H~~GTcrMG~d~~sVVD~~~rV~Gv~nL~VvDaSv~P~~~~~np~~ti~aiAEkaAd~~  520 (526)
T 3t37_A          442 T-PNSAAEMDDFIARSVITHHHPCGTCRMGKDPDAVVDANLRLKALDNLFVVDASIMPNLTAGPIHAAVLAIAETFARQY  520 (526)
T ss_dssp             C-CCSHHHHHHHHHHHEEECSCCBCTTCBCSSTTCSBCTTCBBTTCSSEEECSGGGCSSCCSSCCHHHHHHHHHHHHHHH
T ss_pred             C-CCCHHHHHHHHHhcCccCcccCccccCCCCCCccCCCCCEEcCCCCeEEEEcCcccCCcChHHHHHHHHHHHHHHHHh
Confidence            5 5788999999999999999999999999    6999999999999999999999999999999999999999999986


Q ss_pred             h
Q 008331          562 L  562 (570)
Q Consensus       562 ~  562 (570)
                      -
T Consensus       521 ~  521 (526)
T 3t37_A          521 H  521 (526)
T ss_dssp             H
T ss_pred             h
Confidence            4

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=100.00  E-value=2.9e-71  Score=599.47  Aligned_cols=477  Identities=28%  Similarity=0.414  Sum_probs=348.5

Q ss_pred             CcccEEEECCCCchhHHHHhhhc--cCeEEEEccCCCCCCCCCccccccccccc---CCCCCCCCCcccccCCcccccCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ--NATVLLLEKGGSPYENPNITDTGNFATTL---LDPSPTSPSQQFISEDGVYNARA  114 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~--g~~VlvLE~G~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g  114 (570)
                      .+||+||||+|.+|+++|.+|++  |.+|+|||+|...........+..+...+   .+|.|.+.++.. .++.+.+.+|
T Consensus        12 ~~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~~~~~~~~~p~~~~~~~~~~~~w~~~~~p~~~-~~~~~~~~rG   90 (546)
T 2jbv_A           12 REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWDYPIEPQEN-GNSFMRHARA   90 (546)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCCTTCHHHHBGGGGGGGTTSTTBCCEEBCCCSS-SCTTCEECCB
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcCCCCccccChhhHHhhcCCcccccccccccCC-CCceEEeecc
Confidence            57999999999999999999999  69999999998654312222233332222   245665666665 6677889999


Q ss_pred             ceeccccccCceeeeCCChhhhh---h----CCCChhhhhhhhHHHHhhcc------CC-----------CCCcchHHHH
Q 008331          115 RVLGGGSVINAGFYTRASLRYVR---E----VGWTESLVNSSYEWVEKKVA------HE-----------PPMLQWQSAV  170 (570)
Q Consensus       115 ~~lGG~s~~~~~~~~r~~~~~~~---~----~gw~~~~l~~~~~~~~~~~~------~~-----------~~~~~~~~~~  170 (570)
                      ++|||+|.+|++++.|+.+.+++   +    .+|+|+++.|||+++|+...      ++           +...+..+.+
T Consensus        91 k~lGGsS~in~~~~~R~~~~d~d~w~~~~G~~gW~~~~l~pyf~k~e~~~~~~~~~~~~g~~Gpl~v~~~~~~~~~~~~~  170 (546)
T 2jbv_A           91 KVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNAEAAWPLYKRLETNEDAGPDAPHHGDSGPVHLMNVPPKDPTGVAL  170 (546)
T ss_dssp             CSTTGGGGTSCCBCCCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHHEEETTCBTTBTTSCBSCSEEEEECCSCCHHHHHH
T ss_pred             cccccCccccceEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhccCCCCccccCCCCCCEEEecCCCCCHHHHHH
Confidence            99999999999999999985332   2    47999999999999997654      11           1224556788


Q ss_pred             HHHHHHcCCCCCCCCCcCC--CCcceeeeeEECCCCccccHHH-hhhhc-CCCCeEEEecceEEEEEecCCCCCCCeEEE
Q 008331          171 RDGLLEAGVLPYNGFTFDH--IYGTKVSGTIFDEDGHRHSAAD-LLEYA-DPEKLTVYLRAVVQRIKFTETGRAKPTAHC  246 (570)
Q Consensus       171 ~~~~~~~G~~~~~~~~~~~--~~~~~~~~~~~~~~g~r~~~~~-~l~~~-~~~g~~i~~~~~V~~i~~~~~~~~~~~v~G  246 (570)
                      .++++++|++.. .+....  ..++..+...|..+|.|+++.. |++.+ ++.|++|++++.|++|++++++    +++|
T Consensus       171 ~~a~~~~G~~~~-d~n~~~~~~~g~~~~~~~~~~~g~R~s~~~a~l~~a~~~~~~~i~~~~~V~~i~~~~~~----~~~G  245 (546)
T 2jbv_A          171 LDACEQAGIPRA-KFNTGTTVVNGANFFQINRRADGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFDADR----RCTG  245 (546)
T ss_dssp             HHHHHHTTCCBC-CSSSSSCCSSEEEECEECBCTTSBBCCHHHHHTGGGTTCTTEEEECSCEEEEEEECTTS----BEEE
T ss_pred             HHHHHHCCCCcc-CCCCCCcCcceEEeeeeecCCCCeEcCHHHHHHHHHhcCCCcEEEeCCEEEEEEECCCC----eEEE
Confidence            899999998654 322111  2233222222222688877654 77644 5789999999999999998733    8999


Q ss_pred             EEEEecC-CceEEEEecCCCCceEEEcCCccccHHHHHHhCCCChhhhhhcCCcccccCCccCcccccCCCceeeeccCC
Q 008331          247 VTFYDHV-GARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMNALFVPSAR  325 (570)
Q Consensus       247 V~~~~~~-G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGiG~~~~l~~~gi~~~~~~p~VG~~l~dh~~~~~~~~~~~  325 (570)
                      |++.+.. |+.++++    ++|+||||||+|+||+||++|||||+++|+++||+++.++|.||+||+||+...+.+..+.
T Consensus       246 V~~~~~~~g~~~~i~----A~k~VIlaaG~~~sp~lL~~SGiG~~~~L~~~gi~~~~dlP~VG~nL~dH~~~~~~~~~~~  321 (546)
T 2jbv_A          246 VDIVDSAFGHTHRLT----ARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHPEGVVQFEAKQ  321 (546)
T ss_dssp             EEEESSTTSCEEEEE----EEEEEEECSHHHHHHHHHHHTTEECHHHHHHTTCCCSEECTTTTCSBBCCEECCEEEEESS
T ss_pred             EEEEECCCCcEEEEE----eCccEEEecCccCCchhhhhcCCCchHHHHhcCCceEeeCcchhhhhhhCccceEEEEecC
Confidence            9998532 7777776    5569999999999999999999999999999999999999999999999998877766554


Q ss_pred             cccchhhhhhcccchhhhHhhhcCCccCcCccccccccccccccccCCCCCCChHHHHHHhHhhhccCCCceeeEEEEee
Q 008331          326 PVEVSLVQVVGITRFDSYIETASGLSLAPSWAQGLTRDYSSFLNKTDIPSLVTPETVAEAVETVNSYLNGTIRAGVIVEK  405 (570)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (570)
                      +.....   ........|.....+..     .+.++..+   .+.....  ....    +    .. . .....+.+...
T Consensus       322 ~~~~~~---~~~~~~~~f~~~~~~~~-----~p~~~~~~---~~~~~~~--~~~~----~----g~-~-~~~~~~~~~~~  378 (546)
T 2jbv_A          322 PMVAES---TQWWEIGIFTPTEDGLD-----RPDLMMHY---GSVPFDM--NTLR----H----GY-P-TTENGFSLTPN  378 (546)
T ss_dssp             CCCSCC---SSSCCEEEEECSSTTCS-----SCSEEEEE---ESSCCCT--TTGG----G----TC-C-CCSSEEEEEEE
T ss_pred             CCcccc---cchhheEEEEecCCCCC-----CCceEEEe---ccccccc--cccc----c----Cc-c-CCCCeEEEEEE
Confidence            321100   00000011111000000     00000000   0000000  0000    0    00 0 01123344556


Q ss_pred             cccccccEEEEecCCCCCCCCeeecCCCCCHh--HHHHHHHHHHHHHHHHcCcccccccCCCcchhHHhhhhccCCCCCC
Q 008331          406 IMGPRSTGHLRLRTLDADDNPSVTFNYFQEPE--DLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLMVNIPTNLR  483 (570)
Q Consensus       406 ~~~p~s~g~v~l~~~d~~~~p~i~~~~~~~~~--D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  483 (570)
                      +.+|.|||+|+|+++||++.|.|+++|+.++.  |++.+.++++.+++++++.+++.+...+                ..
T Consensus       379 ~~~P~srG~V~L~s~dp~~~P~I~~~y~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~----------------~~  442 (546)
T 2jbv_A          379 VTHARSRGTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPAMAEWTGRE----------------LS  442 (546)
T ss_dssp             ETTCCCCBEEECSSSCTTSCCEEECCTTCCTTCHHHHHHHHHHHHHHHHHTSGGGTTTEEEE----------------EE
T ss_pred             EcccCcccEEEecCCCCCCCceecccccCCCchhHHHHHHHHHHHHHHHHcCcchhhccccc----------------cc
Confidence            78999999999999999999999999999999  9999999999999999998887765433                35


Q ss_pred             CCCCCCCHHHHHHHHHhcccccccccccccCC------cccCCCCeEeccCCceEeeccCCCCCCCCchHHHHHHHHHHH
Q 008331          484 PRHVVGASISLEQFCRDTVMTIWHYHGGCQVD------RVVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLGRYM  557 (570)
Q Consensus       484 p~~~~~~~~~i~~~~~~~~~~~~H~~GTc~MG------~VVD~~~rv~g~~nL~V~DaSv~P~~~~~NP~lTi~Ala~r~  557 (570)
                      |+...+++++|++|++....+.+|++||||||      +|||++|||||++||||||+||||+++++||++|+||||+|+
T Consensus       443 p~~~~~sd~~~~~~ir~~~~~~~H~~GTcrMG~~~d~~~VVD~~lrV~Gv~nLrVvDaSv~P~~~~~np~~ti~aiAera  522 (546)
T 2jbv_A          443 PGVEAQTDEELQDYIRKTHNTVYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNITVMMIGERC  522 (546)
T ss_dssp             SCTTCCSHHHHHHHHHHHCEECSCCBCTTCBCCTTCTTCSBCTTCBBTTSBSEEECSGGGCSSCCSSCCHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHhcCCcccccccccccCCCCCCCceECCCCEEECCCCeEEeecccCCCCCCcchHHHHHHHHHHH
Confidence            66667899999999999988999999999999      799999999999999999999999999999999999999999


Q ss_pred             HHHhhccc
Q 008331          558 GLRILQDR  565 (570)
Q Consensus       558 a~~i~~~~  565 (570)
                      ||+|+++.
T Consensus       523 Ad~I~~~~  530 (546)
T 2jbv_A          523 ADLIRSAR  530 (546)
T ss_dssp             HHHC----
T ss_pred             HHHHHhhc
Confidence            99888653

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=100.00  E-value=8.1e-62  Score=527.96  Aligned_cols=484  Identities=21%  Similarity=0.247  Sum_probs=312.1

Q ss_pred             CCCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCCCCCcccccccc--cccCCCC-------CCCCCcccccCC
Q 008331           38 LISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYENPNITDTGNFA--TTLLDPS-------PTSPSQQFISED  107 (570)
Q Consensus        38 ~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~~~~~~~~~~~~--~~~~~~~-------~~~~~~~~~~~~  107 (570)
                      .+.+|||||||+|++|+++|.+|++ |.+|+|||+|+.............|.  .......       ............
T Consensus         4 ~~~~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~   83 (546)
T 1kdg_A            4 SATPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPGLFESLFTDSNPFWWCK   83 (546)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCCSGGGTCCCCCGGGGGGTCCTTTCGGGGGGGGTCSCCTTBCT
T ss_pred             CCCceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCCCCcccccccccccccccccceeeccchhHHHhhcCCCcccccc
Confidence            3567999999999999999999999 99999999997542100000000000  0000000       000000001112


Q ss_pred             cccccCCceeccccccCceeeeCCChhhhhh-----CCCChhhhhhhhHHHHhhccCC--C------CCcchHHHHHHHH
Q 008331          108 GVYNARARVLGGGSVINAGFYTRASLRYVRE-----VGWTESLVNSSYEWVEKKVAHE--P------PMLQWQSAVRDGL  174 (570)
Q Consensus       108 ~~~~~~g~~lGG~s~~~~~~~~r~~~~~~~~-----~gw~~~~l~~~~~~~~~~~~~~--~------~~~~~~~~~~~~~  174 (570)
                      .....+|+++||+|.+|++++.|+.+.+++.     .+|.+++  +||++.+......  +      ...+....+.+++
T Consensus        84 ~~~~~~g~~lGGsS~in~~~~~r~~~~d~d~~~~W~~~w~~~~--p~~~k~e~~~~~~~~~~~~g~~~~~~~~~~~~~a~  161 (546)
T 1kdg_A           84 DITVFAGCLVGGGTSVNGALYWYPNDGDFSSSVGWPSSWTNHA--PYTSKLSSRLPSTDHPSTDGQRYLEQSFNVVSQLL  161 (546)
T ss_dssp             TBSSCCBCSTTGGGGTSCCBCCCCCGGGGCGGGTCCGGGSCCH--HHHHHHHHHSCCBSCCSTTSCCCSCHHHHHHHHHH
T ss_pred             ccccccceeecccccccceEEecCChHHhcCcccCccccCccc--HHHHHHHhcCCCCccCCCCCCccCCHHHHHHHHHH
Confidence            3456789999999999999999999865543     2455555  9999998754311  1      1233456778888


Q ss_pred             HHcCCCCCCCC-CcC-CCCcceeeeeEECCCCccccHHH-hhhh-cCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEE
Q 008331          175 LEAGVLPYNGF-TFD-HIYGTKVSGTIFDEDGHRHSAAD-LLEY-ADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFY  250 (570)
Q Consensus       175 ~~~G~~~~~~~-~~~-~~~~~~~~~~~~~~~g~r~~~~~-~l~~-~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~  250 (570)
                      +++|++..... ... ...++......+ .++.|+++.. |++. .++.|++|++++.|++|+++++     +++||++.
T Consensus       162 ~~~G~~~~~~~~~~~~~~~g~~~~~~~~-~~g~R~s~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~-----~~~gV~~~  235 (546)
T 1kdg_A          162 KGQGYNQATINDNPNYKDHVFGYSAFDF-LNGKRAGPVATYLQTALARPNFTFKTNVMVSNVVRNGS-----QILGVQTN  235 (546)
T ss_dssp             HTTTCEECCGGGSTTCCTTEEEECCBCE-ETTEECHHHHTHHHHHHTCTTEEEECSCCEEEEEEETT-----EEEEEEES
T ss_pred             HHCCCCcCCccCCcCCCCcEEeeeeecc-CCCcccCHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCC-----EEEEEEEE
Confidence            88887532100 000 011111111111 4677877653 7764 4567999999999999999865     99999997


Q ss_pred             ec-CCce--EEEEecCCCCceEEEcCCccccHHHHHHhCCCChhhhhhc------CCccc-----ccCCccCcccccCCC
Q 008331          251 DH-VGAR--HRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKR------GIRVV-----VDQPNVGQGMSDNPM  316 (570)
Q Consensus       251 ~~-~G~~--~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGiG~~~~l~~~------gi~~~-----~~~p~VG~~l~dh~~  316 (570)
                      +. +|+.  .+++    ++|+||||||+++||+||++|||||+++|+++      ||+++     .|+| ||+||+||+.
T Consensus       236 ~~~~g~~~~~~v~----~~~~VIlaaG~~~sp~lL~~sGig~~~~L~~~gn~s~~GI~v~~~~~~~dlp-VG~nL~DH~~  310 (546)
T 1kdg_A          236 DPTLGPNGFIPVT----PKGRVILSAGAFGTSRILFQSGIGPTDMIQTVQSNPTAAAALPPQNQWINLP-VGMNAQDNPS  310 (546)
T ss_dssp             CTTSSGGGEEEEE----EEEEEEECSHHHHHHHHHHHTTBSCHHHHHHHHTSHHHHHHSCCGGGCBCCC-TTTTBBCCCC
T ss_pred             ecCCCceeEEEEE----eCCEEEEcCChhcCHHHHHHcCCCcHHHHHHhhccccCCcccccccccccCC-cccCcccCcc
Confidence            53 4653  3344    68999999999999999999999999999999      58874     7999 9999999998


Q ss_pred             ceeeeccCCc-ccchhhhhh-c--ccchhhhHhhhcCCccCcCccccccccccccccccCCCCCCChHHHHHHhH---hh
Q 008331          317 NALFVPSARP-VEVSLVQVV-G--ITRFDSYIETASGLSLAPSWAQGLTRDYSSFLNKTDIPSLVTPETVAEAVE---TV  389 (570)
Q Consensus       317 ~~~~~~~~~~-~~~~~~~~~-~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  389 (570)
                      ..+.+..+.. ........+ .  ......|.....|......      ...+++........ ........+..   ..
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  383 (546)
T 1kdg_A          311 INLVFTHPSIDAYENWADVWSNPRPADAAQYLANQSGVFAGAS------PKLNFWRAYSGSDG-FTRYAQGTVRPGAASV  383 (546)
T ss_dssp             EEEEEECTTCCCGGGGTTTTTSCCHHHHHHHHHHSCSGGGSCS------CCEEEEEEEECTTS-CEEEEEEEEEESCSCC
T ss_pred             eeEEEecCCcccccchhhhhcchhHHHHHHHHHcCCcccccCC------cceEEEEccCCCCc-chhhhhheeccccccc
Confidence            8776652211 000000000 0  0111233333333211100      00001000000000 00000000000   00


Q ss_pred             hc-cCCCceeeEEEEeecccc-cccEEEEecCCCCCCCCeeecCCCCCHhHHHHHHHHHHHHHHHHcCcccccccCCCcc
Q 008331          390 NS-YLNGTIRAGVIVEKIMGP-RSTGHLRLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVS  467 (570)
Q Consensus       390 ~~-~~~~~~~~~~~~~~~~~p-~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  467 (570)
                      .. .+......+.+...+.+| .|||+|+|+++|  ..|.|+.+|+.++.|++.+.++++.+++++++.+...+      
T Consensus       384 ~~~~~~~~~~~~~~~~~~~~p~~srG~v~L~s~~--~~~~i~~~y~~~~~D~~~~~~~~~~~~~~~~~~~~~~~------  455 (546)
T 1kdg_A          384 NSSLPYNASQIFTITVYLSTGIQSRGRIGIDAAL--RGTVLTPPWLVNPVDKTVLLQALHDVVSNIGSIPGLTM------  455 (546)
T ss_dssp             CCSSCCCGGGEEEEEEEECTTCCCCBEEEECTTC--CEEEEECCTTCSHHHHHHHHHHHHHHTTTGGGSTTCEE------
T ss_pred             ccccccCCCCeEEEEeeecCCCCCCceEecCCCC--CCCcccccccCCchHHHHHHHHHHHHHHHhcCCCcccc------
Confidence            00 000111233444455677 999999998877  55778889999999999999999999999887542211      


Q ss_pred             hhHHhhhhccCCCCCCCCCCCCCHHHHHHHHHhcccccccccccccCC-----cccCCCCeEeccCCceEeeccCCCCCC
Q 008331          468 VQELIDLMVNIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVD-----RVVDRDYKVLGVDGLRVIDGSTFYNSP  542 (570)
Q Consensus       468 ~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~H~~GTc~MG-----~VVD~~~rv~g~~nL~V~DaSv~P~~~  542 (570)
                                    ..|+. ..+++++.++++....+++|++||||||     +|||++|||||++||||||+||||+.+
T Consensus       456 --------------~~p~~-~~~~~~~~~~~~~~~~t~~H~~GTcrMG~~~~~~VVD~~lrV~Gv~nLrVvDaSv~P~~~  520 (546)
T 1kdg_A          456 --------------ITPDV-TQTLEEYVDAYDPATMNSNHWVSSTTIGSSPQSAVVDSNVKVFGTNNLFIVDAGIIPHLP  520 (546)
T ss_dssp             --------------EESCT-TSCHHHHHHHSCGGGGCCSCCBCTTCBCSCTTTCSBCTTCBBTTCSSEEECSGGGCSSCC
T ss_pred             --------------cCCCC-CCCHHHHHHHHHHhcCcccccccceecCCCCCCeeECCCCeEccCCCcEEeEecccCCCC
Confidence                          12443 4678889999988888899999999999     699999999999999999999999999


Q ss_pred             CCchHHHHHHHHHHHHHHhhcc
Q 008331          543 GTNPQATCMMLGRYMGLRILQD  564 (570)
Q Consensus       543 ~~NP~lTi~Ala~r~a~~i~~~  564 (570)
                      ++||++|+||||+|+||+|+++
T Consensus       521 ~~np~~ti~aiAeraAd~I~~~  542 (546)
T 1kdg_A          521 TGNPQGTLMSAAEQAAAKILAL  542 (546)
T ss_dssp             SSCSHHHHHHHHHHHHHHHHHS
T ss_pred             CccHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999987764

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=100.00  E-value=8.6e-60  Score=505.94  Aligned_cols=443  Identities=19%  Similarity=0.181  Sum_probs=294.2

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCC-CCCcccccccc--cccCCCCCCCCCc-------------
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYE-NPNITDTGNFA--TTLLDPSPTSPSQ-------------  101 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~-------------  101 (570)
                      ..+||+||||+|.+|+++|.+|++ |.+|+|||+|..... .+....+....  ....+|.+.+.++             
T Consensus         3 ~~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~t~p~~~~~~l~~~~~~~   82 (504)
T 1n4w_A            3 GGYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWFKNRTEAPLGSFLWLDVVNR   82 (504)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCCCCCCTTSSSSCCTTSCCGGGSBSCSBCCCCTTCHHHHGGGCC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCCcccccccccccCccccccccccccccccccccccccc
Confidence            356999999999999999999999 999999999986442 22222222111  1112455544332             


Q ss_pred             ---ccc------cCCcccccCCceeccccccCceeeeCCChhhhhh--CCCChhhhh-hhhHHHHhhccCCCCC------
Q 008331          102 ---QFI------SEDGVYNARARVLGGGSVINAGFYTRASLRYVRE--VGWTESLVN-SSYEWVEKKVAHEPPM------  163 (570)
Q Consensus       102 ---~~~------~~~~~~~~~g~~lGG~s~~~~~~~~r~~~~~~~~--~gw~~~~l~-~~~~~~~~~~~~~~~~------  163 (570)
                         ++.      .++.+.+.+|++|||+|.+|++++.|+.+.+++.  .+|.+++++ |||+++|+.+...+..      
T Consensus        83 ~~~~~~g~~~~~~~~~~~~~rg~~lGGsS~in~~~~~R~~~~Dfd~w~~~w~~~~l~~pyy~~~E~~~~~~~~~~~~~~~  162 (504)
T 1n4w_A           83 NIDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKRSYFEEILPRVDSSEMYDRYFPRANSMLRVNHIDTKWFED  162 (504)
T ss_dssp             BCCCCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHCTTSCHHHHHHTHHHHHHHHHTCBCCCHHHHHH
T ss_pred             cccccccccceecCCceEEEEeeecchHHHhhCeEEEeCCHHHHHHhccccchhhhhhHHHHHHHHHhCCCCCCcccccC
Confidence               222      4556788999999999999999999999976654  578899999 9999999987654422      


Q ss_pred             ---cchHHHHHHHHHHcCCCC----CC-CCC---------cCCCCcceeeeeEECCCCccccHH-Hhhhhc-CCCCeEEE
Q 008331          164 ---LQWQSAVRDGLLEAGVLP----YN-GFT---------FDHIYGTKVSGTIFDEDGHRHSAA-DLLEYA-DPEKLTVY  224 (570)
Q Consensus       164 ---~~~~~~~~~~~~~~G~~~----~~-~~~---------~~~~~~~~~~~~~~~~~g~r~~~~-~~l~~~-~~~g~~i~  224 (570)
                         .+..+.+.++++++|+++    .+ .+.         ...+..|..+...| .+| |.++. .|++.+ ++.|++|+
T Consensus       163 ~~~~p~~~~~~~a~~~~G~~~~~~p~~~d~n~~~~~g~g~~~~~~~~G~c~~g~-~~g-r~s~~~~~l~~a~~~~n~~i~  240 (504)
T 1n4w_A          163 TEWYKFARVSREQAGKAGLGTVFVPNVYDFGYMQREAAGEVPKSALATEVIYGN-NHG-KQSLDKTYLAAALGTGKVTIQ  240 (504)
T ss_dssp             CGGGHHHHHHHHHHHHTTCCEEECCBSBCHHHHHHHHTTSSCCSGGGTCSTTCC-SSS-BCCTTTTHHHHHHHTTSEEEE
T ss_pred             CCcchHHHHHHHHHHHcCCCCccCCcccccCccccccCccccCCcccccccccC-CCC-ccCHHHHHHHHHHhcCCcEEE
Confidence               245577888999999842    11 110         00011111111112 467 77754 477644 45579999


Q ss_pred             ecceEEEEEecCCCCCCCeEEEEEEEecCC---ceEEEEecCCCCceEEEcCCccccHHHHHHhC-CCChhhhhhcCCcc
Q 008331          225 LRAVVQRIKFTETGRAKPTAHCVTFYDHVG---ARHRACLNNGGKNEIILSAGAIGSPQLLMLSG-VGPANELRKRGIRV  300 (570)
Q Consensus       225 ~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G---~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SG-iG~~~~l~~~gi~~  300 (570)
                      ++++|++|++++++   .+++||++.+.+|   +.++++     +++||||||+|+||+||++|| ||        ||++
T Consensus       241 ~~~~V~~i~~~~~g---~~~~gV~~~~~~g~~~~~~~v~-----A~~VIlaaG~~~s~~lL~~Sg~ig--------~i~~  304 (504)
T 1n4w_A          241 TLHQVKTIRQTKDG---GYALTVEQKDTDGKLLATKEIS-----CRYLFLGAGSLGSTELLVRARDTG--------TLPN  304 (504)
T ss_dssp             ESEEEEEEEECTTS---SEEEEEEEECTTCCEEEEEEEE-----EEEEEECSHHHHHHHHHHHHHHTT--------SSTT
T ss_pred             eCCEEEEEEECCCC---CEEEEEEEeCCCCccceeEEEe-----eCEEEEccCCCCCHHHHHhccccC--------CCCC
Confidence            99999999998632   2899999986567   455564     579999999999999999999 87        5665


Q ss_pred             cccCCccCcccccCCCceeeeccCCcccchhhhhhcccchhhhHhhhcCCccCcCccccccccccccccccCCCCCCChH
Q 008331          301 VVDQPNVGQGMSDNPMNALFVPSARPVEVSLVQVVGITRFDSYIETASGLSLAPSWAQGLTRDYSSFLNKTDIPSLVTPE  380 (570)
Q Consensus       301 ~~~~p~VG~~l~dh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (570)
                      +  ++.||+||+||+...+..... +..          ..+.+.   .+.. .        ..+..+..    +..  +.
T Consensus       305 ~--~~~VG~nl~dh~~~~~~~~~~-~~~----------~~~~~~---~~~~-~--------~~~~~~~~----~~~--~~  353 (504)
T 1n4w_A          305 L--NSEVGAGWGPNGNIMTARANH-MWN----------PTGAHQ---SSIP-A--------LGIDAWDN----SDS--SV  353 (504)
T ss_dssp             C--CTTTTCCBBCTTCEEEEEECC-TTC----------CCCSCC---CSSC-C--------EEEEECCS----STT--CE
T ss_pred             C--ChhhccccccCCcceeeeccC-CCC----------cccCcC---CCcc-E--------EEEeccCC----CCC--ce
Confidence            4  568999999999766543211 100          000000   0000 0        00000000    000  00


Q ss_pred             HHHHHhHhhhccCCCceeeEEEEeecccccccEEEEecCCCCCCCCeeecCCCCCHhHHHHHHHHHH-HHHHHHcCcccc
Q 008331          381 TVAEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHLRLRTLDADDNPSVTFNYFQEPEDLVRCVQGMR-TIIDVLNSRALS  459 (570)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~-~~~~i~~~~~~~  459 (570)
                      .+..+     ..+........+...+.+|.|+|+|+|+++|    |.|+++|+.++ | +.+.++++ .+++++++.+. 
T Consensus       354 ~~~~~-----~~~~~~~~~~~~~~~~~~p~srG~V~L~s~~----~~i~~~~~~~~-D-~~~~~~~~~~~~~i~~~~~~-  421 (504)
T 1n4w_A          354 FAEIA-----PMPAGLETWVSLYLAITKNPQRGTFVYDAAT----DRAKLNWTRDQ-N-APAVNAAKALFDRINKANGT-  421 (504)
T ss_dssp             EEEEE-----CCCCSSCCCEEEEEEEECCCCCBCEEEETTT----TEEEECCCGGG-G-HHHHHHHHHHHHHHHHHHTC-
T ss_pred             EEEec-----cCChHHHhhhhhheeeeccCCCcEEEecCCC----CceEeccCCCc-C-HHHHHHHHHHHHHHHhccCC-
Confidence            00000     0000000123344455679999999998865    47899999998 8 77888888 88888877542 


Q ss_pred             cccCCCcchhHHhhhhccCCCCCCCCCCCCCHHHHHHHHHhcccccccccccccCCcccCCCCeEeccCCceEeeccCCC
Q 008331          460 KFRYPDVSVQELIDLMVNIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVDRVVDRDYKVLGVDGLRVIDGSTFY  539 (570)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~H~~GTc~MG~VVD~~~rv~g~~nL~V~DaSv~P  539 (570)
                       +...+.               +.     .   +++.+   ...+++|++||||||+|||++|||||++||||||+||||
T Consensus       422 -~~~~~~---------------~~-----~---~~~~~---~~~~~~H~~GTcrMG~VVD~~~rV~Gv~nLrVvDaSv~P  474 (504)
T 1n4w_A          422 -IYRYDL---------------FG-----T---QLKAF---ADDFCYHPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIP  474 (504)
T ss_dssp             -CBCCSS---------------SS-----S---SCCSE---ECSEESSCBCSSCTTTTBCTTSBBTTCSSEEECSGGGSC
T ss_pred             -CcCCch---------------hh-----h---hhhhh---ccCccccccCCceeeeEECCCCeEeccCCeEEeeccccC
Confidence             100000               00     0   00000   345789999999999999999999999999999999999


Q ss_pred             CCCCCchHHHHHHHHHHHHHHhhccccCcC
Q 008331          540 NSPGTNPQATCMMLGRYMGLRILQDRDRIS  569 (570)
Q Consensus       540 ~~~~~NP~lTi~Ala~r~a~~i~~~~~~~~  569 (570)
                      +++++||++|+||||+|+||+|+++....|
T Consensus       475 ~~~~~np~~ti~aiAeraAd~I~~~~~~~~  504 (504)
T 1n4w_A          475 GSVGVNPFVTITALAERNVERIIKQDVTAS  504 (504)
T ss_dssp             SCCSSCSHHHHHHHHHHHHHHHHHHHC---
T ss_pred             CCCCcChHHHHHHHHHHHHHHHHHhhccCC
Confidence            999999999999999999999998766543

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=100.00  E-value=1.1e-58  Score=497.47  Aligned_cols=437  Identities=16%  Similarity=0.155  Sum_probs=291.9

Q ss_pred             CCCCCCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCC-CCCcccccccccc-----cCCCCCCCCCc------
Q 008331           35 SAPLISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYE-NPNITDTGNFATT-----LLDPSPTSPSQ------  101 (570)
Q Consensus        35 ~~~~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~-~~~~~~~~~~~~~-----~~~~~~~~~~~------  101 (570)
                      +.....+||+||||+|.+|+++|.+|++ |.+|+|||+|..... .+..   ..+...     ..+|.+.+.++      
T Consensus         5 ~~~~~~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~~~~~p~~---~~~~~~~~~~~~~~w~~~~~pq~~~~~~   81 (507)
T 1coy_A            5 TLADGDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSWDTPGSDG---KIFCGMLNPDKRSMWLADKTDQPVSNFM   81 (507)
T ss_dssp             CCCTTCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCSCSCCTTS---CSSCCSSSCCTTSBBSCSBCCCSSCSBT
T ss_pred             CCCcCCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCCCCcc---cccccccccccccccccccccccccccc
Confidence            3445668999999999999999999999 999999999985431 1100   011111     12345544433      


Q ss_pred             ---------ccc------cCCcccccCCceeccccccCceeeeCCChhhhhh--CCCChhhhh-hhhHHHHhhccCCCCC
Q 008331          102 ---------QFI------SEDGVYNARARVLGGGSVINAGFYTRASLRYVRE--VGWTESLVN-SSYEWVEKKVAHEPPM  163 (570)
Q Consensus       102 ---------~~~------~~~~~~~~~g~~lGG~s~~~~~~~~r~~~~~~~~--~gw~~~~l~-~~~~~~~~~~~~~~~~  163 (570)
                               .+.      .++.+.+.+|++|||+|.+|++++.|+.+.+++.  .+|.+++++ |||+++|+.+...+..
T Consensus        82 ~~~~~~~~~~~~g~~~~~~~~~~~~~rg~~lGGsS~in~~~~~R~~~~dfd~w~~~w~~~~l~~pyy~~~E~~~~~~~~~  161 (507)
T 1coy_A           82 GFGINKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRNYFEEILPSVDSNEMYNKYFPRANTGLGVNNID  161 (507)
T ss_dssp             TBSCCCBCCCCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHCTTSCHHHHHHTHHHHHHHHHTCBCCC
T ss_pred             ccccccccccccceeeEecCCCeEEEEecccchHHHhhCeEEeeCCHHHHHhhCCccchhcchhHHHHHHHHHhCCCCCC
Confidence                     333      4567788899999999999999999999976654  578899999 9999999988765432


Q ss_pred             ---------cchHHHHHHHHHHcCCCCC----C-CCC---------cCCCCcceeeeeEECCCCccccHH-Hhhhh-cCC
Q 008331          164 ---------LQWQSAVRDGLLEAGVLPY----N-GFT---------FDHIYGTKVSGTIFDEDGHRHSAA-DLLEY-ADP  218 (570)
Q Consensus       164 ---------~~~~~~~~~~~~~~G~~~~----~-~~~---------~~~~~~~~~~~~~~~~~g~r~~~~-~~l~~-~~~  218 (570)
                               .+..+.+.++++++|+++.    + .+.         ...+..|..+...| .+| |+++. .|++. .++
T Consensus       162 ~~~~~~~~~~~~~~~~~~a~~~~G~~~~~~p~~~d~n~~~~~g~~~~~~~~~~g~C~~gc-~~g-R~s~~~~~l~~a~~~  239 (507)
T 1coy_A          162 QAWFESTEWYKFARTGRKTAQRSGFTTAFVPNVYDFEYMKKEAAGQVTKSGLGGEVIYGN-NAG-KKSLDKTYLAQAAAT  239 (507)
T ss_dssp             HHHHHHCGGGHHHHHHHHHHHHTTCCEEECCBSBCHHHHHHHHTTCSCCSTTTTCSTTCC-SSS-BCCTTTTHHHHHHHT
T ss_pred             CccccccccchHHHHHHHHHHHcCCCCccCCcccccCcccccCCCcccCccccccccccC-CCC-CcChHHHHHHHHHhc
Confidence                     2345678889999998421    1 110         00011111111112 467 77754 47764 345


Q ss_pred             CCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCc---eEEEEecCCCCceEEEcCCccccHHHHHHhC-CCChhhhh
Q 008331          219 EKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGA---RHRACLNNGGKNEIILSAGAIGSPQLLMLSG-VGPANELR  294 (570)
Q Consensus       219 ~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~---~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SG-iG~~~~l~  294 (570)
                      .|++|+++++|++|++++++   .+++||++.+.+|.   .++++     +++||||||+|+||+||++|| ||.     
T Consensus       240 ~n~~i~~~~~v~~i~~~~~g---~~~~gV~~~~~~g~~~~~~~~~-----A~~VIlaaGa~~sp~lL~~Sg~iG~-----  306 (507)
T 1coy_A          240 GKLTITTLHRVTKVAPATGS---GYSVTMEQIDEQGNVVATKVVT-----ADRVFFAAGSVGTSKLLVSMKAQGH-----  306 (507)
T ss_dssp             TCEEEECSEEEEEEEECSSS---SEEEEEEEECTTSCEEEEEEEE-----EEEEEECSHHHHHHHHHHHHHHTTS-----
T ss_pred             CCcEEEeCCEEEEEEECCCC---CEEEEEEEeCCCCcccccEEEE-----eCEEEEccCccCCHHHHHhcccCCC-----
Confidence            67999999999999998632   27999999865663   45664     579999999999999999999 882     


Q ss_pred             hcCCcccccCCccCcccccCCCceeeec-cCCcccchhhhhhcccchhhhHhhhcCCccCc---Cccccccccccccccc
Q 008331          295 KRGIRVVVDQPNVGQGMSDNPMNALFVP-SARPVEVSLVQVVGITRFDSYIETASGLSLAP---SWAQGLTRDYSSFLNK  370 (570)
Q Consensus       295 ~~gi~~~~~~p~VG~~l~dh~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~  370 (570)
                         ++  +.++.||+||+||+....... ....            ..+.+    .+.....   .+...-...+.. .. 
T Consensus       307 ---lp--nl~d~VG~~l~~h~~~~~~~~~~~~~------------~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~-  363 (507)
T 1coy_A          307 ---LP--NLSSQVGEGWGNNGNIMVGRANHMWD------------ATGSK----QATIPTMGIDNWADPTAPIFAE-IA-  363 (507)
T ss_dssp             ---ST--TSCTTTTCCBBCTTEEEEEEECCTTS------------CCCSC----CCSSCCEEEECTTCTTSCEEEE-EE-
T ss_pred             ---CC--ccChhhCCccccCCcccccccccccc------------ccccc----CCCcceEEEeccCCCCCCcEEE-ec-
Confidence               33  345689999999986432110 1000            00000    0000000   000000000000 00 


Q ss_pred             cCCCCCCChHHHHHHhHhhhccCCCceeeEEEEeecccccccEEEEecCCCCCCCCeeecCCCCCHhHHHHHHHHHH-HH
Q 008331          371 TDIPSLVTPETVAEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHLRLRTLDADDNPSVTFNYFQEPEDLVRCVQGMR-TI  449 (570)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~-~~  449 (570)
                      ..+.                .+.    ....+...+.+|.|+|+|+|+++|+    .|+++|+.++ | ..+.++++ .+
T Consensus       364 ~~~~----------------~~~----~~~~~~~~~~~p~s~G~V~L~s~~~----~i~~~~~~~~-D-~~~~~~~~~~~  417 (507)
T 1coy_A          364 PLPA----------------GLE----TYVSLYLAITKNPERARFQFNSGTG----KVDLTWAQSQ-N-QKGIDMAKKVF  417 (507)
T ss_dssp             CCCC----------------SSC----CCEEEEEEEECCCCCBCEEEETTTT----EEEECCCGGG-G-HHHHHHHHHHH
T ss_pred             cCCH----------------HHh----hheeeeEEEeeeCCCcEEEEccCCC----ceeeccCCCC-c-HHHHHHHHHHH
Confidence            0000                000    1223334456799999999988653    8999999999 8 45666666 88


Q ss_pred             HHHHcCcccccccCCCcchhHHhhhhccCCCCCCCCCCCCCHHHHHHHHHhcccccccccccccCCcccCCCCeEeccCC
Q 008331          450 IDVLNSRALSKFRYPDVSVQELIDLMVNIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVDRVVDRDYKVLGVDG  529 (570)
Q Consensus       450 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~H~~GTc~MG~VVD~~~rv~g~~n  529 (570)
                      ++++++.+.  +...+                .     .++++  ++|   ...+++|++||||||+|||++|||||++|
T Consensus       418 ~~i~~~~~~--~~~~~----------------~-----~~~d~--~~~---~~~~~~H~~GTcrMG~VVD~~~rV~Gv~n  469 (507)
T 1coy_A          418 DKINQKEGT--IYRTD----------------L-----FGVYY--KTW---GDDFTYHPLGGVLLNKATDNFGRLPEYPG  469 (507)
T ss_dssp             HHHHHHHTC--CBCSS----------------C-----C--CC--CSS---BCSEESCCBCSSCTTTTSCTTSBCTTSTT
T ss_pred             HHHHhhcCC--cccCc----------------c-----cccch--hhh---cccccccccCCcchhheECCCCeEeccCC
Confidence            999887652  22111                0     01111  112   34578999999999999999999999999


Q ss_pred             ceEeeccCCCCCCCCchHHHHHHHHHHHHHHhhcccc
Q 008331          530 LRVIDGSTFYNSPGTNPQATCMMLGRYMGLRILQDRD  566 (570)
Q Consensus       530 L~V~DaSv~P~~~~~NP~lTi~Ala~r~a~~i~~~~~  566 (570)
                      |||||+||||+++++||++||||||+|+||+|+++++
T Consensus       470 LrVvDaSv~P~~~~~Np~~ti~alAeraAd~I~~~~~  506 (507)
T 1coy_A          470 LYVVDGSLVPGNVGVNPFVTITALAERNMDKIISSDI  506 (507)
T ss_dssp             EEECSGGGSCSCCSSCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             eEEeechhccCCCCcChHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999998764

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=100.00  E-value=1.3e-47  Score=419.34  Aligned_cols=471  Identities=17%  Similarity=0.137  Sum_probs=281.1

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCCCCCcccccc----------ccc----ccCC------C---
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYENPNITDTGN----------FAT----TLLD------P---   94 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~~~~~~~~~~----------~~~----~~~~------~---   94 (570)
                      ..+|||||||+|++|+.+|..|++ |++|+||||+....+.........          +..    .+..      .   
T Consensus        44 ~~~~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~gg~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~l~~~~~  123 (623)
T 3pl8_A           44 DIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFVNVIQGQLMSVSVPVNTLVV  123 (623)
T ss_dssp             --CEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSSSSTTCCTTCSHHHHHSGGGTHHHHHHTCEESCCCCCCCCC
T ss_pred             cccCCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCCCCcccccccccccCCCccHHHHHHHHHHhhhhcccccccccc
Confidence            357999999999999999999999 999999999986553211000000          000    0000      0   


Q ss_pred             ---C--CCCCCcccccC------Cccc----ccCCceeccccccCceeeeCCChhhh--hhCCC---ChhhhhhhhHHHH
Q 008331           95 ---S--PTSPSQQFISE------DGVY----NARARVLGGGSVINAGFYTRASLRYV--REVGW---TESLVNSSYEWVE  154 (570)
Q Consensus        95 ---~--~~~~~~~~~~~------~~~~----~~~g~~lGG~s~~~~~~~~r~~~~~~--~~~gw---~~~~l~~~~~~~~  154 (570)
                         .  ........+..      ..+.    ...+..+||.+.+|.+...|..+...  ....|   .++++.++|+..+
T Consensus       124 ~~~~~~~~~~~~v~l~~g~~~~~~~~~~l~~~~~~~~vGG~~~~~~g~~~r~~~~e~~~~l~~~~v~~~~~l~~~~~~~~  203 (623)
T 3pl8_A          124 DTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRVVGGMSTAWTCATPRFDREQRPLLVKDDADADDAEWDRLYTKAE  203 (623)
T ss_dssp             CCSCTTSCCCSSCCSCTTCCTTCCTTSCCTTCEECCSTTGGGGTCCCBCCCCCGGGSCCSSTTCHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccCcEEeccCCCcccccchhhhhhcccccccCcceeeccccccCChHHhhhhhcccCccChhhHHHHHHHHH
Confidence               0  00000000000      0011    12456789999999988888776320  00123   2366778888877


Q ss_pred             hhccCCCCC--cchHH-HHHHHHHHcCCCCCCCCCcCCCCcceeeeeEECCCCccccH-HHhhhh-------cCCCCeEE
Q 008331          155 KKVAHEPPM--LQWQS-AVRDGLLEAGVLPYNGFTFDHIYGTKVSGTIFDEDGHRHSA-ADLLEY-------ADPEKLTV  223 (570)
Q Consensus       155 ~~~~~~~~~--~~~~~-~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~-~~~l~~-------~~~~g~~i  223 (570)
                      ..+......  ..... .....+........ .  ..   ..+...........|+++ ..++..       .++.|++|
T Consensus       204 ~l~~vgg~~~~~~~~~~~~~~~l~~~~~~~~-~--~~---~~p~a~~~~~~~~~r~s~~~~~l~~~~~l~~~~~~~nv~v  277 (623)
T 3pl8_A          204 SYFQTGTDQFKESIRHNLVLNKLTEEYKGQR-D--FQ---QIPLAATRRSPTFVEWSSANTVFDLQNRPNTDAPEERFNL  277 (623)
T ss_dssp             HHHTEESCTTTTCHHHHHHHHHHHHHTTTTS-C--CE---ECCEEEEEEETTEEEECCHHHHCCCCCEEETTEEEEEEEE
T ss_pred             HhcccccccccCccccccchHHHHHhhhhcc-c--cc---ccchhhccCCCCccccchHHhhhhhhhcchhhccCCCEEE
Confidence            765433221  11111 11122222111000 0  00   000000111112234433 335542       34469999


Q ss_pred             EecceEEEEEecCCCCCCCeEEEEEEEe-cCCceEEEEecCCCCceEEEcCCccccHHHHHHhCCCChhhhhhcCCcccc
Q 008331          224 YLRAVVQRIKFTETGRAKPTAHCVTFYD-HVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVV  302 (570)
Q Consensus       224 ~~~~~V~~i~~~~~~~~~~~v~GV~~~~-~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGiG~~~~l~~~gi~~~~  302 (570)
                      ++++.|++|++++++   .+++||++.+ .+|+.+++     .+++||||+|++.+|+||++||||+..+|+..||++  
T Consensus       278 ~~~~~V~~i~~~~~~---~~v~GV~~~~~~~g~~~~i-----~A~~VIlaaG~~~s~~lL~~sgiG~~~~l~~~~i~~--  347 (623)
T 3pl8_A          278 FPAVACERVVRNALN---SEIESLHIHDLISGDRFEI-----KADVYVLTAGAVHNTQLLVNSGFGQLGRPNPANPPE--  347 (623)
T ss_dssp             ECSEEEEEEEECTTS---SCEEEEEEEETTTCCEEEE-----CEEEEEECSCTTHHHHHHHTTTSSCCSSCCTTSCCS--
T ss_pred             EeCCEEEEEEEECCC---CEEEEEEEEEcCCCcEEEE-----ECCEEEEcCCCcCCHHHHHhcCCCccccccccCCCC--
Confidence            999999999997542   3899999997 46777676     478999999999999999999999999999999998  


Q ss_pred             cCCccCcccccCCCceeeeccCCcccchhhhhhcccchhhhHhhhcCCcc-------------CcCcccccccccccccc
Q 008331          303 DQPNVGQGMSDNPMNALFVPSARPVEVSLVQVVGITRFDSYIETASGLSL-------------APSWAQGLTRDYSSFLN  369 (570)
Q Consensus       303 ~~p~VG~~l~dh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-------------~~~~~~~~~~~~~~~~~  369 (570)
                      ++|.||+||+||+...+.+.++.+....+...+...  + |   ..|..+             .+.|......++.....
T Consensus       348 ~l~~vG~nl~dh~~~~~~~~~~~~~~~~~~~~~~~~--g-~---~g~~~~~~~~~~~~p~~~~~p~~~~~~~~~~~~~~~  421 (623)
T 3pl8_A          348 LLPSLGSYITEQSLVFCQTVMSTELIDSVKSDMTIR--G-T---PGELTYSVTYTPGASTNKHPDWWNEKVKNHMMQHQE  421 (623)
T ss_dssp             SCTTTTBSCBCCCEEEEEEEECHHHHHHHTTTCEEE--S-C---TTSTTCEEECCTTCTTCSSCHHHHHHHHHHHHHCTT
T ss_pred             CCcccccchhhCcCceEEEEECCccccccccccccc--c-c---CCCcceecccccCcccccCCchhhhhhhhhhhcccc
Confidence            999999999999998887776654211111100000  0 0   000000             00000000000000000


Q ss_pred             --ccCCCCCCChHHH------HHHhHh-----h------hccCCC-ceeeEEEEeecccccccEEEEecC--CCCCCCCe
Q 008331          370 --KTDIPSLVTPETV------AEAVET-----V------NSYLNG-TIRAGVIVEKIMGPRSTGHLRLRT--LDADDNPS  427 (570)
Q Consensus       370 --~~~~~~~~~~~~~------~~~~~~-----~------~~~~~~-~~~~~~~~~~~~~p~s~g~v~l~~--~d~~~~p~  427 (570)
                        ...|-....+...      ..|..+     +      ..+... ...+..+.+.+  |.++|+|+|++  +|+++.|.
T Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~--p~~~n~v~L~~~~~D~~g~P~  499 (623)
T 3pl8_A          422 DPLPIPFEDPEPQVTTLFQPSHPWHTQIHRDAFSYGAVQQSIDSRLIVDWRFFGRTE--PKEENKLWFSDKITDAYNMPQ  499 (623)
T ss_dssp             CCCSSCTTCCCCEEECCCBTTBCEEEEEECCSCCCSCCCCSSCGGGEEEEEEEECCC--CCTTCEEEEEEEEECTTSSEE
T ss_pred             cccccccccccccccccccccCcchhhhhhhhccccccccccccceEEEEEEEEeec--cCCCCEEEECCCCcCCCCCce
Confidence              0000000000000      000000     0      000000 11233344444  77799999976  79999999


Q ss_pred             eecCCCCCHh-HHHHHHHHHHHHHHHHcCcccccccCCCcchhHHhhhhccCCCCCCCCCCCCCHHHHHHHHHhcccccc
Q 008331          428 VTFNYFQEPE-DLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLMVNIPTNLRPRHVVGASISLEQFCRDTVMTIW  506 (570)
Q Consensus       428 i~~~~~~~~~-D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~  506 (570)
                      ++++|..+++ |+++++++++.+.+++++++.......+.               ..                 ...+++
T Consensus       500 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------------~~-----------------~~~~~~  547 (623)
T 3pl8_A          500 PTFDFRFPAGRTSKEAEDMMTDMCVMSAKIGGFLPGSLPQ---------------FM-----------------EPGLVL  547 (623)
T ss_dssp             EEEECCCCTTHHHHHHHHHHHHHHHHHTTTEEECTTSCSE---------------EC-----------------CTTTTC
T ss_pred             EEEEEeCCcHHHHHHHHHHHHHHHHHHHhcCCcccCchhh---------------cc-----------------CCCCcc
Confidence            9999999999 99999999999999998876443211100               00                 123588


Q ss_pred             cccccccCC------ccc-CCCCeEeccCCceEeeccCCCCCCCCchHHHHHHHHHHHHHHhhccc
Q 008331          507 HYHGGCQVD------RVV-DRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLGRYMGLRILQDR  565 (570)
Q Consensus       507 H~~GTc~MG------~VV-D~~~rv~g~~nL~V~DaSv~P~~~~~NP~lTi~Ala~r~a~~i~~~~  565 (570)
                      |++||||||      +|| |++|||||++||||+|+|+||+++++||++|+||||+|+|++|+++.
T Consensus       548 H~~gt~~mg~~~~~~~vvvd~~~~~~~~~~l~v~d~s~~p~~~~~np~~t~~a~a~r~a~~i~~~~  613 (623)
T 3pl8_A          548 HLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKSCEYIKQNF  613 (623)
T ss_dssp             CCBCTTCBCSSTTTTTCSBCTTCBBTTCSSEEECSGGGCCSCCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred             cCCCceeCCCCCCCCeeEECCCCCEecCCCeEEecCCccCCCCCcChHHHHHHHHHHHHHHHHHHh
Confidence            999999999      586 99999999999999999999999999999999999999999998764

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=99.61  E-value=8.6e-15  Score=156.97  Aligned_cols=193  Identities=16%  Similarity=0.195  Sum_probs=110.1

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCCCCCcccccccccccCCCCCCCCCcccccCCcccccCCcee
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYENPNITDTGNFATTLLDPSPTSPSQQFISEDGVYNARARVL  117 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l  117 (570)
                      +.+|||||||+|++|+++|.+|++ |++|+||||++.                                          .
T Consensus        39 ~~~~DVvVVGaG~AGl~AA~~aa~~G~~V~vlEk~~~------------------------------------------~   76 (510)
T 4at0_A           39 DYEADVVVAGYGIAGVAASIEAARAGADVLVLERTSG------------------------------------------W   76 (510)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS------------------------------------------S
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC------------------------------------------C
Confidence            568999999999999999999999 999999999863                                          3


Q ss_pred             ccccccCceeeeCCC-hhhhhhCCCChhhhhhhhHHHHhhccCCCCCcc------hHHHHHHHHHHcCCCCCCCCC----
Q 008331          118 GGGSVINAGFYTRAS-LRYVREVGWTESLVNSSYEWVEKKVAHEPPMLQ------WQSAVRDGLLEAGVLPYNGFT----  186 (570)
Q Consensus       118 GG~s~~~~~~~~r~~-~~~~~~~gw~~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~G~~~~~~~~----  186 (570)
                      ||+|..+++.++.+. ..+....+.. +..+.++++..+......+...      ......+++.+.|++......    
T Consensus        77 GG~s~~s~G~~~~~~~~~~~~~~g~~-ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~~~  155 (510)
T 4at0_A           77 GGATALAGGFIYLGGGTPLQKACGFD-DSPENMKTFMMAALGPGADEEKITDYCEGSVEHYNWLVDCGVPFKESFWGEPG  155 (510)
T ss_dssp             CTTGGGSCCCEECCSSCHHHHHTTCC-CCHHHHHHHHHHHSCSSCCHHHHHHHHHTHHHHHHHHHHTTCCCCSCEECSSS
T ss_pred             CCcchhcCcceecCCCCHHHHHhCCC-CCHHHHHHHHHHHhCCCCCHHHHHHHHHhhHHHHHHHHHcCCeecccccCCcc
Confidence            556666655544332 2222222211 2222333333322221111110      012345566677764221100    


Q ss_pred             --cCCCCc------------------ceeeeeEECC----CCcc----ccHHHhhhhcCCCCeEEEecceEEEEEecCCC
Q 008331          187 --FDHIYG------------------TKVSGTIFDE----DGHR----HSAADLLEYADPEKLTVYLRAVVQRIKFTETG  238 (570)
Q Consensus       187 --~~~~~~------------------~~~~~~~~~~----~g~r----~~~~~~l~~~~~~g~~i~~~~~V~~i~~~~~~  238 (570)
                        .....+                  ...+... ..    .+..    .....++..+++.|++|+++++|++|+.++++
T Consensus       156 ~~~~~~~~~~~~g~e~~~~~~~~~~~~~r~~~~-~~~~~~~g~~~g~~~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~g  234 (510)
T 4at0_A          156 WEPPFDDGLMYSGGENAAPFNEIAAPAPRGHVP-QMDGKRTGEKGGGYMLMKPLVETAEKLGVRAEYDMRVQTLVTDDTG  234 (510)
T ss_dssp             SSCSSSCSEECCSSTTSTTGGGTSCCCCCEECC-CCSSCBTTTBCTTHHHHHHHHHHHHHTTCEEECSEEEEEEEECTTC
T ss_pred             cccCCcccccccCcccccccccccCcccceeee-cccccccccCCCHHHHHHHHHHHHHHcCCEEEecCEeEEEEECCCC
Confidence              000000                  0000000 00    1111    11222555666679999999999999998544


Q ss_pred             CCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccc-cHHHHHH
Q 008331          239 RAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIG-SPQLLML  284 (570)
Q Consensus       239 ~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~-tp~LLl~  284 (570)
                          +|+||++.+ +|+.++++    +.|.||||+|++. ++.+|.+
T Consensus       235 ----~v~GV~~~~-~g~~~~i~----A~k~VVlAtGG~~~n~~m~~~  272 (510)
T 4at0_A          235 ----RVVGIVAKQ-YGKEVAVR----ARRGVVLATGSFAYNDKMIEA  272 (510)
T ss_dssp             ----CEEEEEEEE-TTEEEEEE----EEEEEEECCCCCTTCHHHHHH
T ss_pred             ----cEEEEEEEE-CCcEEEEE----eCCeEEEeCCChhhCHHHHHH
Confidence                999999985 66666665    3369999999998 5555543

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=99.51  E-value=9.8e-14  Score=150.63  Aligned_cols=190  Identities=16%  Similarity=0.162  Sum_probs=109.3

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCCCCCcccccccccccCCCCCCCCCcccccCCcccccCCcee
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYENPNITDTGNFATTLLDPSPTSPSQQFISEDGVYNARARVL  117 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l  117 (570)
                      ..++||||||+|++|+++|..|++ |++|+||||++..                                          
T Consensus       119 ~~~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~------------------------------------------  156 (566)
T 1qo8_A          119 SETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFS------------------------------------------  156 (566)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSS------------------------------------------
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC------------------------------------------
Confidence            467999999999999999999999 9999999998643                                          


Q ss_pred             ccccccCceeeeCCChhhhhhCCCChhhhhhhhHHHHhhccCCCCCcc------hHHHHHHHHHHcCCCCCCCCCcCCCC
Q 008331          118 GGGSVINAGFYTRASLRYVREVGWTESLVNSSYEWVEKKVAHEPPMLQ------WQSAVRDGLLEAGVLPYNGFTFDHIY  191 (570)
Q Consensus       118 GG~s~~~~~~~~r~~~~~~~~~gw~~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~G~~~~~~~~~~~~~  191 (570)
                      ||.|...++.........++..+.. +..+.++....+......+...      ......+++.+.|++. ...  ....
T Consensus       157 gg~s~~s~gg~~~~~~~~~~~~g~~-ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~Gv~~-~~~--~~~~  232 (566)
T 1qo8_A          157 GGNSMISAGGMNAVGTKQQTAHGVE-DKVEWFIEDAMKGGRQQNDIKLVTILAEQSADGVQWLESLGANL-DDL--KRSG  232 (566)
T ss_dssp             CTTGGGCCSCEECSSCHHHHHTTCC-CCHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCC-CEE--ECCT
T ss_pred             CCcccccCceeEccCCHHHHHhCCC-CCHHHHHHHHHHhcCCCCCHHHHHHHHhccHHHHHHHHhcCCcc-ccc--cccC
Confidence            3444444333332222222222211 2233344333222111111100      1123455667777642 110  0011


Q ss_pred             cceeeeeEECCCCcc--c-cHHHhhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCce
Q 008331          192 GTKVSGTIFDEDGHR--H-SAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNE  268 (570)
Q Consensus       192 ~~~~~~~~~~~~g~r--~-~~~~~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~  268 (570)
                      +........+.++..  . ....+...+++.|++|+++++|++|+.++++    +|+||++.+.+|+..+++     ++.
T Consensus       233 g~~~~r~~~~~~~~~~~~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g----~v~Gv~~~~~~g~~~~i~-----A~~  303 (566)
T 1qo8_A          233 GARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDH----SVVGAVVHGKHTGYYMIG-----AKS  303 (566)
T ss_dssp             TCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEECTTS----BEEEEEEEETTTEEEEEE-----EEE
T ss_pred             CCCCCceeecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEECCCC----cEEEEEEEeCCCcEEEEE-----cCE
Confidence            111111121222211  1 1122445566679999999999999998733    999999987678766665     699


Q ss_pred             EEEcCCccccHHHHH
Q 008331          269 IILSAGAIGSPQLLM  283 (570)
Q Consensus       269 VVLaaGa~~tp~LLl  283 (570)
                      ||||+|++...+-|+
T Consensus       304 VVlAtGg~s~~~~~~  318 (566)
T 1qo8_A          304 VVLATGGYGMNKEMI  318 (566)
T ss_dssp             EEECCCCCTTCHHHH
T ss_pred             EEEecCCcccCHHHH
Confidence            999999987644443

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=99.50  E-value=2e-13  Score=148.35  Aligned_cols=186  Identities=17%  Similarity=0.139  Sum_probs=105.4

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCCCCCcccccccccccCCCCCCCCCcccccCCcccccCCceec
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYENPNITDTGNFATTLLDPSPTSPSQQFISEDGVYNARARVLG  118 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lG  118 (570)
                      +++||||||+|++|+++|..|++ |++|+||||++..                                          |
T Consensus       125 ~~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~------------------------------------------g  162 (571)
T 1y0p_A          125 DTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVI------------------------------------------G  162 (571)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS------------------------------------------C
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC------------------------------------------C
Confidence            36999999999999999999999 9999999998643                                          3


Q ss_pred             cccccCceeeeCCChhhhhhCCCChhhhhhhhHHHHhhccCCCCCcc------hHHHHHHHHHHcCCCCCCCCCcCCCCc
Q 008331          119 GGSVINAGFYTRASLRYVREVGWTESLVNSSYEWVEKKVAHEPPMLQ------WQSAVRDGLLEAGVLPYNGFTFDHIYG  192 (570)
Q Consensus       119 G~s~~~~~~~~r~~~~~~~~~gw~~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~G~~~~~~~~~~~~~~  192 (570)
                      |.|...++.............+.. +..+.++....+.-....+...      ......+++.+.|++. ...  ....+
T Consensus       163 g~s~~a~gg~~~~~~~~~~~~g~~-ds~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~-~~~--~~~~g  238 (571)
T 1y0p_A          163 GNAKLAAGGMNAAWTDQQKAKKIT-DSPELMFEDTMKGGQNINDPALVKVLSSHSKDSVDWMTAMGADL-TDV--GMMGG  238 (571)
T ss_dssp             TTGGGCCSCEECSSCHHHHHTTCC-CCHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCC-CEE--ECCTT
T ss_pred             CchhhcCceEEeCCCHHHHHhCCC-CCHHHHHHHHHHhcCCCCCHHHHHHHHHccHHHHHHHHhcCCCC-ccC--cccCC
Confidence            333333332222222222222221 2223333332211111111000      0123455666777642 110  00111


Q ss_pred             ceeeeeEECCCCcccc---HHHhhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceE
Q 008331          193 TKVSGTIFDEDGHRHS---AADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEI  269 (570)
Q Consensus       193 ~~~~~~~~~~~g~r~~---~~~~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~V  269 (570)
                      ........+.++....   ...+...+.+.|++|+++++|++|+.++++    +++||.+.+.+|+..++.     ++.|
T Consensus       239 ~~~~r~~~~~~g~~~g~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g----~v~Gv~~~~~~g~~~~i~-----a~~V  309 (571)
T 1y0p_A          239 ASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKG----TVKGILVKGMYKGYYWVK-----ADAV  309 (571)
T ss_dssp             CSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEECTTS----CEEEEEEEETTTEEEEEE-----CSEE
T ss_pred             cCCCeeEecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEeeEeEEcCCC----eEEEEEEEeCCCcEEEEE-----CCeE
Confidence            1111122222221111   112445566679999999999999998733    899999986677766664     6889


Q ss_pred             EEcCCccccHH
Q 008331          270 ILSAGAIGSPQ  280 (570)
Q Consensus       270 VLaaGa~~tp~  280 (570)
                      |||+|++...+
T Consensus       310 VlAtGg~~~n~  320 (571)
T 1y0p_A          310 ILATGGFAKNN  320 (571)
T ss_dssp             EECCCCCTTCH
T ss_pred             EEeCCCcccCH
Confidence            99999987543

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=99.39  E-value=2.8e-12  Score=139.15  Aligned_cols=190  Identities=19%  Similarity=0.147  Sum_probs=103.3

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCCCCCcccccccccccCCCCCCCCCcccccCCcccccCCceec
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYENPNITDTGNFATTLLDPSPTSPSQQFISEDGVYNARARVLG  118 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lG  118 (570)
                      .++||||||+|++|+++|..|++ |.+|+||||.+...                                          
T Consensus       125 ~~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~~------------------------------------------  162 (572)
T 1d4d_A          125 ETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPG------------------------------------------  162 (572)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSSC------------------------------------------
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC------------------------------------------
Confidence            46899999999999999999999 99999999987542                                          


Q ss_pred             cccccCceeeeCCChhhhhhCCCChhhhhhhhHHHHhhccCCCCCcc------hHHHHHHHHHHcCCCCCCCCCcCCCCc
Q 008331          119 GGSVINAGFYTRASLRYVREVGWTESLVNSSYEWVEKKVAHEPPMLQ------WQSAVRDGLLEAGVLPYNGFTFDHIYG  192 (570)
Q Consensus       119 G~s~~~~~~~~r~~~~~~~~~gw~~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~G~~~~~~~~~~~~~~  192 (570)
                      |.+...++.+......+....+.. +..+.++....+......+...      ......+++.+.|++. ...  ....+
T Consensus       163 ~~~~~a~gg~~~~~~~~~~~~g~~-ds~~~~~~~~~~~g~~~~~~~~v~~~~~~~~~~i~~l~~~Gv~~-~~~--~~~gg  238 (572)
T 1d4d_A          163 GNTKLAAGGMNAAETKPQAKLGIE-DKKQIMIDDTMKGGRNINDPELVKVLANNSSDSIDWLTSMGADM-TDV--GRMGG  238 (572)
T ss_dssp             TTGGGCCSCEECCSSSTTGGGTCC-CCTHHHHHHHHHHTTTCSCHHHHHHHHHTHHHHHHHHHHHTCCC-CEE--ECCTT
T ss_pred             cchhhhCCeeEccCCHHHHHhCCC-CCHHHHHHHHHHhcCCCCCHHHHHHHHHccHHHHHHHHhcCCcc-ccc--cccCC
Confidence            222222222211111111111111 1122222222211111100000      0123455666667642 110  00111


Q ss_pred             ceeeeeEECCCCcc--ccH-HHhhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceE
Q 008331          193 TKVSGTIFDEDGHR--HSA-ADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEI  269 (570)
Q Consensus       193 ~~~~~~~~~~~g~r--~~~-~~~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~V  269 (570)
                      ........+.++..  ... ..++..+++.|++|+++++|++|+.++++    +++||++.+.+|+...+.     ++.|
T Consensus       239 ~~~~r~~~~~~~~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~~g----~v~GV~~~~~~G~~~~i~-----A~~V  309 (572)
T 1d4d_A          239 ASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASG----KVTGVLVKGEYTGYYVIK-----ADAV  309 (572)
T ss_dssp             CSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEEC--C----CEEEEEEEETTTEEEEEE-----CSEE
T ss_pred             CcCCeeEecCCCCCCHHHHHHHHHHHHHHcCCeEEecCEEEEEEECCCC----eEEEEEEEeCCCcEEEEE-----cCEE
Confidence            11111121222211  111 22445566679999999999999988723    899999987678766665     6999


Q ss_pred             EEcCCcccc-HHHHHH
Q 008331          270 ILSAGAIGS-PQLLML  284 (570)
Q Consensus       270 VLaaGa~~t-p~LLl~  284 (570)
                      |||+|++.. +.++..
T Consensus       310 VlAtGg~~~~~~~~~~  325 (572)
T 1d4d_A          310 VIAAGGFAKNNERVSK  325 (572)
T ss_dssp             EECCCCCTTCHHHHHH
T ss_pred             EEeCCCCccCHHHHHH
Confidence            999999874 555543

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=99.34  E-value=1e-11  Score=135.09  Aligned_cols=57  Identities=12%  Similarity=0.153  Sum_probs=47.3

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEe-cCCceEEEEecCCCCceEEEcCCcccc
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYD-HVGARHRACLNNGGKNEIILSAGAIGS  278 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~-~~G~~~~v~~~~~aa~~VVLaaGa~~t  278 (570)
                      +...+.+.|++|++++.|++|+.+++     ++.||.+.+ .+|+.+.+.     ++.||||+|++..
T Consensus       161 L~~~~~~~gv~i~~~~~v~~Li~~~g-----~v~Gv~~~~~~~G~~~~i~-----A~~VVlATGG~~~  218 (621)
T 2h88_A          161 LYGRSLRYDTSYFVEYFALDLLMENG-----ECRGVIALCIEDGTIHRFR-----AKNTVIATGGYGR  218 (621)
T ss_dssp             HHHHHTTSCCEEEETEEEEEEEEETT-----EEEEEEEEETTTCCEEEEE-----EEEEEECCCCCGG
T ss_pred             HHHHHHhCCCEEEEceEEEEEEEECC-----EEEEEEEEEcCCCcEEEEE-----cCeEEECCCcccc
Confidence            44566778999999999999998765     999999986 467766664     7899999999864

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=99.33  E-value=8.7e-12  Score=136.59  Aligned_cols=57  Identities=9%  Similarity=0.056  Sum_probs=46.1

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEe-cCCceEEEEecCCCCceEEEcCCcccc
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYD-HVGARHRACLNNGGKNEIILSAGAIGS  278 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~-~~G~~~~v~~~~~aa~~VVLaaGa~~t  278 (570)
                      +...+.+.|++|++++.|++|+.+++     +|+||.+.+ .+|+.+.+.     ++.||||+|++..
T Consensus       164 L~~~a~~~gv~i~~~~~v~~L~~~~g-----~v~Gv~~~~~~~G~~~~i~-----A~~VVlATGG~~~  221 (660)
T 2bs2_A          164 VANECLKLGVSIQDRKEAIALIHQDG-----KCYGAVVRDLVTGDIIAYV-----AKGTLIATGGYGR  221 (660)
T ss_dssp             HHHHHHHHTCEEECSEEEEEEEEETT-----EEEEEEEEETTTCCEEEEE-----CSEEEECCCCCGG
T ss_pred             HHHHHHhCCCEEEECcEEEEEEecCC-----EEEEEEEEECCCCcEEEEE-----cCEEEEccCcchh
Confidence            44455567999999999999998765     999999875 467766664     7899999999864

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=99.32  E-value=1.1e-11  Score=134.53  Aligned_cols=58  Identities=14%  Similarity=0.111  Sum_probs=46.0

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEe-cCCceEEEEecCCCCceEEEcCCcccc
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYD-HVGARHRACLNNGGKNEIILSAGAIGS  278 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~-~~G~~~~v~~~~~aa~~VVLaaGa~~t  278 (570)
                      +...+.+.|++|++++.|++|+.++++    +++||.+.+ .+|+...+.     ++.||||+|++..
T Consensus       149 L~~~~~~~gv~i~~~~~v~~L~~~~~g----~v~Gv~~~~~~~g~~~~i~-----A~~VVlAtGg~~~  207 (588)
T 2wdq_A          149 LYQQNLKNHTTIFSEWYALDLVKNQDG----AVVGCTALCIETGEVVYFK-----ARATVLATGGAGR  207 (588)
T ss_dssp             HHHHHHHTTCEEEETEEEEEEEECTTS----CEEEEEEEETTTCCEEEEE-----EEEEEECCCCCGG
T ss_pred             HHHHHHhCCCEEEeCcEEEEEEECCCC----EEEEEEEEEcCCCeEEEEE-----cCEEEECCCCCcc
Confidence            445555679999999999999997333    899999886 467766664     6899999999764

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.26  E-value=1.1e-11  Score=126.70  Aligned_cols=63  Identities=13%  Similarity=0.100  Sum_probs=47.0

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHHh-CC
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLS-GV  287 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~S-Gi  287 (570)
                      +...+++.|++|+++++|++|..+++     .+..|..  .+|+..++.     ++.||+|+|+ +|+.|+... |+
T Consensus       156 l~~~~~~~Gv~i~~~~~v~~i~~~~~-----~~~~v~~--~~g~~~~~~-----a~~VV~A~G~-~s~~l~~~~~g~  219 (369)
T 3dme_A          156 YQGDAESDGAQLVFHTPLIAGRVRPE-----GGFELDF--GGAEPMTLS-----CRVLINAAGL-HAPGLARRIEGI  219 (369)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEECTT-----SSEEEEE--CTTSCEEEE-----EEEEEECCGG-GHHHHHHTEETS
T ss_pred             HHHHHHHCCCEEECCCEEEEEEEcCC-----ceEEEEE--CCCceeEEE-----eCEEEECCCc-chHHHHHHhcCC
Confidence            44566778999999999999998866     3334544  367545554     7999999998 588888766 65

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=99.26  E-value=2.2e-11  Score=130.97  Aligned_cols=61  Identities=8%  Similarity=0.092  Sum_probs=43.9

Q ss_pred             hhhcCC-CCeEEEecceEEEEEecCCC--CCCCeEEEEEEEe-cCCceEEEEecCCCCceEEEcCCcccc
Q 008331          213 LEYADP-EKLTVYLRAVVQRIKFTETG--RAKPTAHCVTFYD-HVGARHRACLNNGGKNEIILSAGAIGS  278 (570)
Q Consensus       213 l~~~~~-~g~~i~~~~~V~~i~~~~~~--~~~~~v~GV~~~~-~~G~~~~v~~~~~aa~~VVLaaGa~~t  278 (570)
                      ...+.+ .|++|++++.|++|+.++++  ....++.||.+.+ .+|+.+.+.     ++.||||+|++..
T Consensus       145 ~~~~~~~~gv~i~~~~~v~~L~~~~~g~~~~~~~v~Gv~~~~~~~G~~~~i~-----A~~VVlAtGg~~~  209 (540)
T 1chu_A          145 VSKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCH-----AKAVVLATGGASK  209 (540)
T ss_dssp             HHHHHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEE-----CSEEEECCCCCGG
T ss_pred             HHHHHcCCCCEEEeCcEEEEEEEcCCCCcccCCEEEEEEEEEcCCCcEEEEE-----cCeEEECCCCccc
Confidence            344444 79999999999999984321  0001799999986 357665664     7999999999754

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=99.21  E-value=1.8e-10  Score=125.28  Aligned_cols=58  Identities=12%  Similarity=0.163  Sum_probs=45.9

Q ss_pred             hhhhcCCCC-eEEEecceEEEEEecCCCCCCCeEEEEEEEe-cCCceEEEEecCCCCceEEEcCCccccH
Q 008331          212 LLEYADPEK-LTVYLRAVVQRIKFTETGRAKPTAHCVTFYD-HVGARHRACLNNGGKNEIILSAGAIGSP  279 (570)
Q Consensus       212 ~l~~~~~~g-~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~-~~G~~~~v~~~~~aa~~VVLaaGa~~tp  279 (570)
                      ++..+.+.| ++|++++.|++|+.+++     +++||.+.+ .+|+.+.+.     ++.||||+|++...
T Consensus       140 L~~~~~~~gnv~i~~~~~v~~l~~~~g-----~v~Gv~~~~~~~G~~~~i~-----A~~VVlAtGg~s~~  199 (602)
T 1kf6_A          140 LFQTSLQFPQIQRFDEHFVLDILVDDG-----HVRGLVAMNMMEGTLVQIR-----ANAVVMATGGAGRV  199 (602)
T ss_dssp             HHHHHTTCTTEEEEETEEEEEEEEETT-----EEEEEEEEETTTTEEEEEE-----CSCEEECCCCCGGG
T ss_pred             HHHHHHhCCCcEEEeCCEEEEEEEeCC-----EEEEEEEEEcCCCcEEEEE-----cCeEEECCCCCccc
Confidence            445555566 99999999999999865     899998875 467665664     68999999997653

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=99.21  E-value=3.4e-11  Score=130.12  Aligned_cols=66  Identities=12%  Similarity=0.076  Sum_probs=53.2

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEec-CCceEEEEecCCCCceEEEcCCccccHHHHHHhCCC
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDH-VGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVG  288 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~-~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGiG  288 (570)
                      +...+.+.|++|+++++|++|..+++     ++.||++.+. +|+...+.     ++.||+|+|. ++..|+...|+.
T Consensus       176 L~~~a~~~G~~i~~~~~V~~l~~~~g-----~v~gV~~~d~~tg~~~~i~-----A~~VV~AaG~-~s~~l~~~~g~~  242 (561)
T 3da1_A          176 IMKEAVARGAVALNYMKVESFIYDQG-----KVVGVVAKDRLTDTTHTIY-----AKKVVNAAGP-WVDTLREKDRSK  242 (561)
T ss_dssp             HHHHHHHTTCEEEESEEEEEEEEETT-----EEEEEEEEETTTCCEEEEE-----EEEEEECCGG-GHHHHHHTTTCC
T ss_pred             HHHHHHHcCCEEEcCCEEEEEEEcCC-----eEEEEEEEEcCCCceEEEE-----CCEEEECCCc-chHHHHHhcCCC
Confidence            44456678999999999999999876     8999999863 46556664     7999999998 688888877654

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=99.15  E-value=1.1e-10  Score=122.84  Aligned_cols=54  Identities=17%  Similarity=0.300  Sum_probs=42.4

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccH
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSP  279 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp  279 (570)
                      +...+++.|++|+++++|++|..+++     ++.+|++.  +|+  ++.     ++.||+|+|+...|
T Consensus       140 L~~~~~~~GV~i~~~~~V~~i~~~~~-----~v~~V~~~--~G~--~i~-----Ad~VVlAtGg~s~~  193 (447)
T 2i0z_A          140 LLTRLKDLGVKIRTNTPVETIEYENG-----QTKAVILQ--TGE--VLE-----TNHVVIAVGGKSVP  193 (447)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEEETT-----EEEEEEET--TCC--EEE-----CSCEEECCCCSSSG
T ss_pred             HHHHHHHCCCEEEeCcEEEEEEecCC-----cEEEEEEC--CCC--EEE-----CCEEEECCCCCcCC
Confidence            44556668999999999999998765     77888764  564  343     69999999998755

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=99.14  E-value=5.1e-10  Score=121.18  Aligned_cols=65  Identities=9%  Similarity=-0.034  Sum_probs=51.0

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEec-CCceEEEEecCCCCceEEEcCCccccHHHHHHhCC
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDH-VGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGV  287 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~-~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGi  287 (570)
                      ++..+.+.|++|+++++|++|..+++     ++.+|++.|. +|+..+++     ++.||+|+|+ ++..|+...|+
T Consensus       194 l~~~a~~~Ga~i~~~t~V~~l~~~~~-----~v~gV~~~d~~tg~~~~i~-----A~~VV~AaG~-ws~~l~~~~g~  259 (571)
T 2rgh_A          194 NIKKAAEDGAYLVSKMKAVGFLYEGD-----QIVGVKARDLLTDEVIEIK-----AKLVINTSGP-WVDKVRNLNFT  259 (571)
T ss_dssp             HHHHHHHTTCEEESSEEEEEEEEETT-----EEEEEEEEETTTCCEEEEE-----BSCEEECCGG-GHHHHHTTCCS
T ss_pred             HHHHHHHcCCeEEeccEEEEEEEeCC-----EEEEEEEEEcCCCCEEEEE-----cCEEEECCCh-hHHHHHHhhcc
Confidence            34456678999999999999999876     8999999864 45545664     7999999998 58888765543

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=99.13  E-value=1.8e-10  Score=118.30  Aligned_cols=36  Identities=28%  Similarity=0.483  Sum_probs=33.2

Q ss_pred             CCcccEEEECCCCchhHHHHhhhccCeEEEEccCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQNATVLLLEKGGS   74 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~g~~VlvLE~G~~   74 (570)
                      +.++||||||+|.+|+++|++|++|.+|+||||++.
T Consensus         7 ~~~~dv~IIGaGi~Gls~A~~La~G~~V~vlE~~~~   42 (381)
T 3nyc_A            7 PIEADYLVIGAGIAGASTGYWLSAHGRVVVLEREAQ   42 (381)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHTTTSCEEEECSSSS
T ss_pred             CCcCCEEEECCcHHHHHHHHHHhCCCCEEEEECCCC
Confidence            457899999999999999999999999999999864

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=99.12  E-value=2.5e-10  Score=125.30  Aligned_cols=59  Identities=12%  Similarity=0.045  Sum_probs=44.5

Q ss_pred             hhhcCCC-Ce-EEEecceEEEEEecCCCCCCCeEEEEEEEe-cCCceEEEEecCCCCceEEEcCCcccc
Q 008331          213 LEYADPE-KL-TVYLRAVVQRIKFTETGRAKPTAHCVTFYD-HVGARHRACLNNGGKNEIILSAGAIGS  278 (570)
Q Consensus       213 l~~~~~~-g~-~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~-~~G~~~~v~~~~~aa~~VVLaaGa~~t  278 (570)
                      ...+.+. |+ +|++++.|++|+.++++  ..+|+||.+.+ .+|+...+.     ++.||||+|++..
T Consensus       158 ~~~~~~~~gv~~i~~~~~v~~L~~~~~~--~g~v~Gv~~~~~~~g~~~~i~-----A~~VVlAtGG~~~  219 (643)
T 1jnr_A          158 AEAAKMAVGEENIYERVFIFELLKDNND--PNAVAGAVGFSVREPKFYVFK-----AKAVILATGGATL  219 (643)
T ss_dssp             HHHHHHHHCGGGEECSEEEEEEEECTTC--TTBEEEEEEEESSSSCEEEEE-----CSEEEECCCCBCS
T ss_pred             HHHHHhcCCCcEEEecCEEEEEEEcCCc--cceeEEEEEEEecCCcEEEEE-----cCEEEECCCcccc
Confidence            3344444 99 99999999999987541  12899999865 467665664     6999999999864

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=99.10  E-value=1.1e-10  Score=127.85  Aligned_cols=60  Identities=10%  Similarity=0.132  Sum_probs=45.5

Q ss_pred             hhhhcCCC--CeEEEecceEEEEEecCCCCCCCeEEEEEEEe-cCCceEEEEecCCCCceEEEcCCcccc
Q 008331          212 LLEYADPE--KLTVYLRAVVQRIKFTETGRAKPTAHCVTFYD-HVGARHRACLNNGGKNEIILSAGAIGS  278 (570)
Q Consensus       212 ~l~~~~~~--g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~-~~G~~~~v~~~~~aa~~VVLaaGa~~t  278 (570)
                      +...+.+.  |++|+.++.|++|+.++++  ..+|+||.+.+ .+|+.+.+.     ++.||||+|+++.
T Consensus       172 L~~~a~~~~~gV~i~~~~~v~dLi~~~~~--~g~v~Gv~~~~~~~g~~~~i~-----Ak~VVLATGG~g~  234 (662)
T 3gyx_A          172 VAEAAKNALGQDRIIERIFIVKLLLDKNT--PNRIAGAVGFNLRANEVHIFK-----ANAMVVACGGAVN  234 (662)
T ss_dssp             HHHHHHHHHCTTTEECSEEECCCEECSSS--TTBEEEEEEEESSSSCEEEEE-----CSEEEECCCCBCS
T ss_pred             HHHHHHhcCCCcEEEEceEEEEEEEeCCc--cceEEEEEEEEcCCCcEEEEE-----eCEEEECCCcccc
Confidence            33444444  9999999999999998651  12899999876 457766665     7999999999863

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.10  E-value=1.6e-10  Score=118.82  Aligned_cols=60  Identities=10%  Similarity=0.028  Sum_probs=45.5

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHHhCC
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGV  287 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGi  287 (570)
                      +...+++.|++|+++++|++|..+++     +++||++.  +|   ++.     ++.||+|+|+ +++.|+...|+
T Consensus       155 l~~~~~~~Gv~i~~~~~v~~i~~~~~-----~v~gv~~~--~g---~i~-----a~~VV~A~G~-~s~~l~~~~g~  214 (382)
T 1y56_B          155 FAVKAKEYGAKLLEYTEVKGFLIENN-----EIKGVKTN--KG---IIK-----TGIVVNATNA-WANLINAMAGI  214 (382)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEESSS-----BEEEEEET--TE---EEE-----CSEEEECCGG-GHHHHHHHHTC
T ss_pred             HHHHHHHCCCEEECCceEEEEEEECC-----EEEEEEEC--Cc---EEE-----CCEEEECcch-hHHHHHHHcCC
Confidence            44556678999999999999998765     78887653  55   343     7899999998 57777766543

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=99.07  E-value=8.6e-11  Score=123.38  Aligned_cols=37  Identities=30%  Similarity=0.377  Sum_probs=33.9

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cC-eEEEEccCCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NA-TVLLLEKGGSP   75 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~-~VlvLE~G~~~   75 (570)
                      ..++||||||+|.+|+++|++|++ |. +|+||||+...
T Consensus         4 ~~~~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~~~~   42 (438)
T 3dje_A            4 TKSSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPVP   42 (438)
T ss_dssp             CTTSCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSCSS
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEEeCCCCC
Confidence            457999999999999999999999 99 99999998754

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=99.03  E-value=1.5e-09  Score=112.19  Aligned_cols=35  Identities=34%  Similarity=0.565  Sum_probs=32.6

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      .++||||||+|++|+++|+.|++ |.+|+||||+..
T Consensus         3 ~~~DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~~   38 (397)
T 2oln_A            3 ESYDVVVVGGGPVGLATAWQVAERGHRVLVLERHTF   38 (397)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCT
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            35899999999999999999999 999999999864

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=99.03  E-value=2e-10  Score=119.31  Aligned_cols=36  Identities=22%  Similarity=0.411  Sum_probs=31.8

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      ..+|||||||+|++|+++|..|++ |.+|+|||+++.
T Consensus        25 ~~~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~   61 (417)
T 3v76_A           25 AEKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARA   61 (417)
T ss_dssp             ---CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            457999999999999999999999 999999999874

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=99.02  E-value=1.4e-09  Score=112.60  Aligned_cols=60  Identities=13%  Similarity=0.110  Sum_probs=45.0

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHHhCC
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGV  287 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGi  287 (570)
                      +...+++.|++++++++|++|..+++     ++.+|++.  +|   ++     .++.||+|+|+ +++.|+...|+
T Consensus       180 l~~~~~~~g~~i~~~~~v~~i~~~~~-----~~~~v~~~--~g---~~-----~a~~vV~a~G~-~s~~l~~~~g~  239 (405)
T 2gag_B          180 FARKANEMGVDIIQNCEVTGFIKDGE-----KVTGVKTT--RG---TI-----HAGKVALAGAG-HSSVLAEMAGF  239 (405)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEESSS-----BEEEEEET--TC---CE-----EEEEEEECCGG-GHHHHHHHHTC
T ss_pred             HHHHHHHCCCEEEcCCeEEEEEEeCC-----EEEEEEeC--Cc---eE-----ECCEEEECCch-hHHHHHHHcCC
Confidence            44456668999999999999998765     77777653  55   24     36899999998 56677766544

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=99.01  E-value=3e-09  Score=113.53  Aligned_cols=60  Identities=12%  Similarity=0.016  Sum_probs=46.4

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEe-cCCceEEEEecCCCCceEEEcCCccccHHHHH
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYD-HVGARHRACLNNGGKNEIILSAGAIGSPQLLM  283 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~-~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl  283 (570)
                      +...+.+.|++|+++++|++|..++      ++.+|.+.+ .+|+...++     ++.||+|+|+ ++..|+.
T Consensus       155 l~~~a~~~Gv~i~~~~~V~~l~~~~------~~~~V~~~d~~~G~~~~i~-----A~~VV~AtG~-~s~~l~~  215 (501)
T 2qcu_A          155 NAQMVVRKGGEVLTRTRATSARREN------GLWIVEAEDIDTGKKYSWQ-----ARGLVNATGP-WVKQFFD  215 (501)
T ss_dssp             HHHHHHHTTCEEECSEEEEEEEEET------TEEEEEEEETTTCCEEEEE-----ESCEEECCGG-GHHHHHH
T ss_pred             HHHHHHHcCCEEEcCcEEEEEEEeC------CEEEEEEEECCCCCEEEEE-----CCEEEECCCh-hHHHHHH
Confidence            4445667799999999999998864      467888875 357655664     7999999999 5777765

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=99.01  E-value=9.5e-10  Score=116.33  Aligned_cols=52  Identities=15%  Similarity=0.231  Sum_probs=40.0

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccc
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIG  277 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~  277 (570)
                      +...+++.|++++++++| +|+.+++     ++.||.+.+.+|+   +     .++.||+|+|++.
T Consensus       125 L~~~~~~~gv~i~~~~~v-~l~~~~~-----~v~Gv~v~~~~g~---~-----~a~~VVlAtGg~~  176 (472)
T 2e5v_A          125 LLKLAREEGIPIIEDRLV-EIRVKDG-----KVTGFVTEKRGLV---E-----DVDKLVLATGGYS  176 (472)
T ss_dssp             HHHHHHHTTCCEECCCEE-EEEEETT-----EEEEEEETTTEEE---C-----CCSEEEECCCCCG
T ss_pred             HHHHHHhCCCEEEECcEE-EEEEeCC-----EEEEEEEEeCCCe---E-----EeeeEEECCCCCc
Confidence            444556679999999999 9998765     8999988643332   3     4799999999864

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=99.00  E-value=1.4e-09  Score=123.21  Aligned_cols=60  Identities=15%  Similarity=0.123  Sum_probs=46.4

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHHhCC
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGV  287 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGi  287 (570)
                      +...+.+.|++|+++++|++|..+++     ++++|.+.  +|   ++     .++.||+|+|+ +++.|+...|+
T Consensus       157 L~~~a~~~Gv~i~~~t~V~~i~~~~~-----~v~~V~t~--~G---~i-----~Ad~VV~AaG~-~s~~l~~~~g~  216 (830)
T 1pj5_A          157 LIKRTESAGVTYRGSTTVTGIEQSGG-----RVTGVQTA--DG---VI-----PADIVVSCAGF-WGAKIGAMIGM  216 (830)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEEETT-----EEEEEEET--TE---EE-----ECSEEEECCGG-GHHHHHHTTTC
T ss_pred             HHHHHHHcCCEEECCceEEEEEEeCC-----EEEEEEEC--Cc---EE-----ECCEEEECCcc-chHHHHHHhCC
Confidence            44566678999999999999998765     77777653  55   34     37999999999 57888776665

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=99.00  E-value=3.4e-10  Score=116.39  Aligned_cols=39  Identities=28%  Similarity=0.549  Sum_probs=34.0

Q ss_pred             CCCCCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           36 APLISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        36 ~~~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      ...+.++||||||+|.+|+++|+.|++ |.+|+|||++..
T Consensus        12 ~~~~~~~dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~~~   51 (382)
T 1ryi_A           12 RAMKRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTM   51 (382)
T ss_dssp             --CCSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSST
T ss_pred             hccCCCCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence            334567999999999999999999999 999999999853

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=98.99  E-value=1.8e-09  Score=119.55  Aligned_cols=35  Identities=26%  Similarity=0.304  Sum_probs=32.2

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      ..+||||||+|.+|+++|++|++ |.+|+||||...
T Consensus       271 ~~~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~~  306 (676)
T 3ps9_A          271 SKREAAIIGGGIASALLSLALLRRGWQVTLYCADEA  306 (676)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence            34899999999999999999999 999999999753

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=98.96  E-value=1.6e-09  Score=120.26  Aligned_cols=35  Identities=29%  Similarity=0.345  Sum_probs=32.5

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      .++||||||+|.+|+++|++|++ |.+|+||||+..
T Consensus       263 ~~~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~~  298 (689)
T 3pvc_A          263 RCDDIAIIGGGIVSALTALALQRRGAVVTLYCADAQ  298 (689)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHTTTCCEEEEESSSS
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHCCCcEEEEeCCCc
Confidence            46899999999999999999999 999999999853

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=98.92  E-value=5.5e-09  Score=107.56  Aligned_cols=34  Identities=26%  Similarity=0.476  Sum_probs=32.1

Q ss_pred             cccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      ++||||||+|.+|+++|+.|++ |.+|+|||++..
T Consensus         3 ~~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~~   37 (389)
T 2gf3_A            3 HFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDP   37 (389)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            6899999999999999999999 999999999864

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=98.88  E-value=2e-09  Score=110.25  Aligned_cols=35  Identities=29%  Similarity=0.515  Sum_probs=32.5

Q ss_pred             cccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      +|||||||+|.+|+++|+.|++ |.+|+||||+...
T Consensus         2 ~~dvvIIG~Gi~Gl~~A~~La~~G~~V~vle~~~~~   37 (372)
T 2uzz_A            2 KYDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHMPP   37 (372)
T ss_dssp             CEEEEESCTTHHHHHHHHHHHHTTCCEEEECSSCSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            5899999999999999999999 9999999998643

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=98.87  E-value=4.8e-09  Score=110.34  Aligned_cols=33  Identities=33%  Similarity=0.671  Sum_probs=31.2

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-c-CeEEEEccC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-N-ATVLLLEKG   72 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g-~~VlvLE~G   72 (570)
                      .++||||||+|.+|+++|++|++ | .+|+||||.
T Consensus        22 ~~~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~~   56 (448)
T 3axb_A           22 PRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAG   56 (448)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHHCSCEEEEESS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCcEEEEccC
Confidence            57999999999999999999999 9 999999993

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=98.84  E-value=4.8e-09  Score=108.50  Aligned_cols=34  Identities=32%  Similarity=0.602  Sum_probs=32.2

Q ss_pred             cccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      +|||||||+|++|+++|..|++ |.+|+||||++.
T Consensus         4 ~~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~   38 (401)
T 2gqf_A            4 YSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKK   38 (401)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            5899999999999999999999 999999999864

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=98.83  E-value=1.2e-08  Score=109.15  Aligned_cols=55  Identities=22%  Similarity=0.216  Sum_probs=45.2

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCcc
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAI  276 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~  276 (570)
                      +...+.+.|++|+.+++|++|..+++     ++.+|.+.+.+|+..++.     ++.||.|+|..
T Consensus       117 L~~~a~~~Gv~i~~~~~V~~v~~~~~-----~v~gv~~~~~dG~~~~i~-----ad~VI~AdG~~  171 (512)
T 3e1t_A          117 LLRNSERKGVDVRERHEVIDVLFEGE-----RAVGVRYRNTEGVELMAH-----ARFIVDASGNR  171 (512)
T ss_dssp             HHHHHHHTTCEEESSCEEEEEEEETT-----EEEEEEEECSSSCEEEEE-----EEEEEECCCTT
T ss_pred             HHHHHHhCCCEEEcCCEEEEEEEECC-----EEEEEEEEeCCCCEEEEE-----cCEEEECCCcc
Confidence            34455568999999999999999776     899999987778766664     79999999984

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=98.82  E-value=1.6e-08  Score=105.44  Aligned_cols=57  Identities=12%  Similarity=0.031  Sum_probs=44.6

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHH
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLM  283 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl  283 (570)
                      +...+.+.|++|+++++|++|..+++     +++||.+   +|+  ++     .++.||+|++...+.+||.
T Consensus       202 l~~~~~~~G~~i~~~~~V~~i~~~~~-----~~~gv~~---~g~--~~-----~ad~VV~a~~~~~~~~ll~  258 (425)
T 3ka7_A          202 LETVISANGGKIHTGQEVSKILIENG-----KAAGIIA---DDR--IH-----DADLVISNLGHAATAVLCS  258 (425)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEEETT-----EEEEEEE---TTE--EE-----ECSEEEECSCHHHHHHHTT
T ss_pred             HHHHHHHcCCEEEECCceeEEEEECC-----EEEEEEE---CCE--EE-----ECCEEEECCCHHHHHHhcC
Confidence            44556678999999999999999876     8888875   354  34     3799999999987777653

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=98.81  E-value=1.3e-08  Score=104.64  Aligned_cols=55  Identities=11%  Similarity=0.048  Sum_probs=42.9

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCcccc
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGS  278 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~t  278 (570)
                      +...+.+.|++++.+++|+.+..+++     ++++|.... +|+..+++     ++.||.|.|. +|
T Consensus       108 L~~~a~~~G~~~~~~~~v~~~~~~~~-----~~~~v~~~~-~~~~~~~~-----a~~vIgAdG~-~S  162 (397)
T 3oz2_A          108 LAALAAKAGADVWVKSPALGVIKENG-----KVAGAKIRH-NNEIVDVR-----AKMVIAADGF-ES  162 (397)
T ss_dssp             HHHHHHHHTCEEESSCCEEEEEEETT-----EEEEEEEEE-TTEEEEEE-----EEEEEECCCT-TC
T ss_pred             HHHHHHhcCcEEeeeeeeeeeeeccc-----eeeeeeecc-cccceEEE-----EeEEEeCCcc-cc
Confidence            34456678999999999999999887     888888774 66666664     6888888886 44

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=98.80  E-value=1.1e-08  Score=109.23  Aligned_cols=36  Identities=22%  Similarity=0.269  Sum_probs=33.2

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      ..++||||||+|++|+.+|+.|++ |++|+||||++.
T Consensus       105 ~~~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~  141 (549)
T 3nlc_A          105 NLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKE  141 (549)
T ss_dssp             TCCCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCc
Confidence            446899999999999999999999 999999999964

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=98.80  E-value=3e-09  Score=113.59  Aligned_cols=59  Identities=17%  Similarity=0.137  Sum_probs=41.5

Q ss_pred             HhhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHH
Q 008331          211 DLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLM  283 (570)
Q Consensus       211 ~~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl  283 (570)
                      .+.+.+++.|++|+++++|++|+.+++     +++||++.  +|+.  +     .++.||.+++...+-+.|+
T Consensus       226 aL~~~~~~~Gg~I~~~~~V~~I~~~~~-----~~~gV~~~--~g~~--~-----~ad~VV~~a~~~~~~~~Ll  284 (501)
T 4dgk_A          226 GMIKLFQDLGGEVVLNARVSHMETTGN-----KIEAVHLE--DGRR--F-----LTQAVASNADVVHTYRDLL  284 (501)
T ss_dssp             HHHHHHHHTTCEEECSCCEEEEEEETT-----EEEEEEET--TSCE--E-----ECSCEEECCC---------
T ss_pred             HHHHHHHHhCCceeeecceeEEEeeCC-----eEEEEEec--CCcE--E-----EcCEEEECCCHHHHHHHhc
Confidence            355566778999999999999999987     99999875  7764  3     3789999999877766665

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=98.80  E-value=6.1e-08  Score=95.28  Aligned_cols=36  Identities=33%  Similarity=0.562  Sum_probs=32.7

Q ss_pred             CcccEEEECCCCchhHHHHhhhc--cCeEEEEccCCCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ--NATVLLLEKGGSP   75 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~--g~~VlvLE~G~~~   75 (570)
                      .+|||||||+|++|+.+|..|++  |.+|+||||.+..
T Consensus        38 ~~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~   75 (284)
T 1rp0_A           38 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSP   75 (284)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSC
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCC
Confidence            46899999999999999999998  8999999998643

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=98.73  E-value=2.6e-08  Score=104.22  Aligned_cols=40  Identities=30%  Similarity=0.428  Sum_probs=36.6

Q ss_pred             CCCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCC
Q 008331           38 LISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYE   77 (570)
Q Consensus        38 ~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~   77 (570)
                      +.++|||||||+|.+|+++|.+|++ |.+|+||||++...+
T Consensus        17 ~~~~~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~Gg   57 (475)
T 3p1w_A           17 QGEHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGG   57 (475)
T ss_dssp             CCCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCG
T ss_pred             ccccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCCCC
Confidence            3567999999999999999999999 999999999987765

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=98.73  E-value=4.8e-08  Score=101.69  Aligned_cols=35  Identities=23%  Similarity=0.382  Sum_probs=32.5

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      .++||||||+|++|+++|..|++ |.+|+||||...
T Consensus         4 ~~~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~~   39 (421)
T 3nix_A            4 EKVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKF   39 (421)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCS
T ss_pred             ccCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            45899999999999999999999 999999999853

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=98.72  E-value=9.9e-08  Score=95.19  Aligned_cols=35  Identities=31%  Similarity=0.494  Sum_probs=32.2

Q ss_pred             CcccEEEECCCCchhHHHHhhhc---cCeEEEEccCCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ---NATVLLLEKGGS   74 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~---g~~VlvLE~G~~   74 (570)
                      .+|||||||+|++|+++|+.|++   |++|+|||++..
T Consensus        78 ~~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~  115 (344)
T 3jsk_A           78 AETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVA  115 (344)
T ss_dssp             HBCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSS
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCc
Confidence            36899999999999999999998   899999999864

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=98.70  E-value=9.4e-08  Score=100.58  Aligned_cols=55  Identities=7%  Similarity=0.165  Sum_probs=43.9

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEec-CCceEEEEecCCCCceEEEcCCcc
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDH-VGARHRACLNNGGKNEIILSAGAI  276 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~-~G~~~~v~~~~~aa~~VVLaaGa~  276 (570)
                      +...+.+.|++|+++++|++|..+++     +++||.+.+. +|+..++.     ++.||.|.|+.
T Consensus       106 L~~~a~~~gv~i~~~~~v~~i~~~~~-----~v~gv~~~~~~~G~~~~~~-----ad~VV~AdG~~  161 (453)
T 3atr_A          106 VLKEAQDRGVEIWDLTTAMKPIFEDG-----YVKGAVLFNRRTNEELTVY-----SKVVVEATGYS  161 (453)
T ss_dssp             HHHHHHHTTCEEESSEEEEEEEEETT-----EEEEEEEEETTTTEEEEEE-----CSEEEECCGGG
T ss_pred             HHHHHHHcCCEEEeCcEEEEEEEECC-----EEEEEEEEEcCCCceEEEE-----cCEEEECcCCc
Confidence            34455557999999999999998776     8999998765 67655664     79999999984

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=98.68  E-value=7.4e-08  Score=100.32  Aligned_cols=35  Identities=26%  Similarity=0.372  Sum_probs=32.7

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYE   77 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~   77 (570)
                      ||||||||.+|+++|++|++ |.+|+||||.+...+
T Consensus         2 dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG   37 (421)
T 3nrn_A            2 RAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGG   37 (421)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSSCT
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCc
Confidence            89999999999999999999 999999999987654

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=98.66  E-value=6.1e-08  Score=104.98  Aligned_cols=53  Identities=19%  Similarity=0.217  Sum_probs=41.6

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCc
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGA  275 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa  275 (570)
                      +...+.+.|++++.+++|++|..+++     .+.+|.+.+ +|+..++.     ++.||.|+|.
T Consensus       134 L~~~a~~~Gv~i~~g~~V~~v~~~~g-----~~~~V~~~~-~G~~~~i~-----AdlVV~AdG~  186 (591)
T 3i3l_A          134 LLDEARSRGITVHEETPVTDVDLSDP-----DRVVLTVRR-GGESVTVE-----SDFVIDAGGS  186 (591)
T ss_dssp             HHHHHHHTTCEEETTCCEEEEECCST-----TCEEEEEEE-TTEEEEEE-----ESEEEECCGG
T ss_pred             HHHHHHhCCCEEEeCCEEEEEEEcCC-----CEEEEEEec-CCceEEEE-----cCEEEECCCC
Confidence            34456668999999999999998754     677888875 67555664     7999999997

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=98.56  E-value=2e-07  Score=101.15  Aligned_cols=58  Identities=24%  Similarity=0.298  Sum_probs=43.9

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEe----cCCce-------EEEEecCCCCceEEEcCCcccc
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYD----HVGAR-------HRACLNNGGKNEIILSAGAIGS  278 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~----~~G~~-------~~v~~~~~aa~~VVLaaGa~~t  278 (570)
                      +...+++.|++|+++++|++|+.++++    +++||.+.+    .+|+.       .+++     ++.||+|.|+...
T Consensus       150 L~~~a~~~Gv~i~~g~~v~~l~~~~~g----~V~gV~~~~~g~~~~G~~~~~~~~g~~i~-----Ad~VV~AdG~~S~  218 (584)
T 2gmh_A          150 MGEQAEALGVEVYPGYAAAEILFHEDG----SVKGIATNDVGIQKDGAPKTTFERGLELH-----AKVTIFAEGCHGH  218 (584)
T ss_dssp             HHHHHHHTTCEEETTCCEEEEEECTTS----SEEEEEECCEEECTTSCEEEEEECCCEEE-----CSEEEECCCTTCH
T ss_pred             HHHHHHHcCCEEEcCCEEEEEEEcCCC----CEEEEEeCCccccCCCCcccccCCceEEE-----CCEEEEeeCCCch
Confidence            344556679999999999999998754    788998863    35542       3453     7999999999654

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=98.54  E-value=4.8e-07  Score=89.69  Aligned_cols=35  Identities=31%  Similarity=0.486  Sum_probs=31.8

Q ss_pred             CcccEEEECCCCchhHHHHhhhc---cCeEEEEccCCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ---NATVLLLEKGGS   74 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~---g~~VlvLE~G~~   74 (570)
                      .+|||+|||+|++|+++|..|++   |.+|+|+|+++.
T Consensus        64 ~~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~  101 (326)
T 2gjc_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVA  101 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSS
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCcc
Confidence            45799999999999999999997   799999999864

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=98.53  E-value=4.1e-08  Score=101.79  Aligned_cols=35  Identities=34%  Similarity=0.647  Sum_probs=31.9

Q ss_pred             CcccEEEECCCCchhHHHHhhhc---cCeEEEEccCCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ---NATVLLLEKGGS   74 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~---g~~VlvLE~G~~   74 (570)
                      +++||||||+|.+|+++|+.|++   |++|+|||++..
T Consensus        35 ~~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~   72 (405)
T 3c4n_A           35 EAFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGL   72 (405)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCS
T ss_pred             CcCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            46999999999999999999997   799999999853

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=98.53  E-value=5.4e-07  Score=96.91  Aligned_cols=35  Identities=29%  Similarity=0.452  Sum_probs=32.9

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      .++||||||+|++|+++|+.|++ |.+|+||||.+.
T Consensus         4 ~~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~   39 (535)
T 3ihg_A            4 HEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPG   39 (535)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSS
T ss_pred             ccCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            46899999999999999999999 999999999864

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=98.52  E-value=3e-07  Score=98.75  Aligned_cols=34  Identities=21%  Similarity=0.460  Sum_probs=32.1

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      .+|||||||+|.||+.+|..|++ |.+|+|||++.
T Consensus        26 ~~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~   60 (637)
T 2zxi_A           26 DEFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNA   60 (637)
T ss_dssp             GCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCEEEEEecc
Confidence            46999999999999999999999 99999999884

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.52  E-value=2.9e-06  Score=84.34  Aligned_cols=61  Identities=16%  Similarity=0.202  Sum_probs=47.3

Q ss_pred             cCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEe-cCCceEEEEecCCCCceEEEcCCccccHHHHHHhCC
Q 008331          216 ADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYD-HVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGV  287 (570)
Q Consensus       216 ~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~-~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGi  287 (570)
                      .++.|++++++++|+++..+ +     ++.+|++.+ .+|+...+.     ++.||+|+|.--+..+|..+|+
T Consensus       200 ~~~~gv~~~~~~~v~~i~~~-~-----~~~~v~~~~~~~g~~~~~~-----~D~vv~a~G~~p~~~~~~~~g~  261 (323)
T 3f8d_A          200 KKKPNVEFVLNSVVKEIKGD-K-----VVKQVVVENLKTGEIKELN-----VNGVFIEIGFDPPTDFAKSNGI  261 (323)
T ss_dssp             HTCTTEEEECSEEEEEEEES-S-----SEEEEEEEETTTCCEEEEE-----CSEEEECCCEECCHHHHHHTTC
T ss_pred             HhCCCcEEEeCCEEEEEecc-C-----ceeEEEEEECCCCceEEEE-----cCEEEEEECCCCChhHHhhcCe
Confidence            34569999999999999876 3     677888885 347655564     7999999998777677777765

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=98.50  E-value=3.1e-07  Score=92.77  Aligned_cols=33  Identities=27%  Similarity=0.393  Sum_probs=30.2

Q ss_pred             ccEEEECCCCchhHHHHhhhc----cCeEEEEccCCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ----NATVLLLEKGGS   74 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~----g~~VlvLE~G~~   74 (570)
                      +||+|||+|++|+++|+.|++    |.+|+|+||++.
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~   38 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADD   38 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSS
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCC
Confidence            599999999999999999987    689999999863

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=98.47  E-value=4e-07  Score=98.14  Aligned_cols=35  Identities=31%  Similarity=0.495  Sum_probs=32.6

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      ..+|||||||||.||+.+|..|++ |.+|+|||++.
T Consensus        26 ~~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~   61 (651)
T 3ces_A           26 PDPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNI   61 (651)
T ss_dssp             SSCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CCcCCEEEECChHHHHHHHHHHHhCCCCEEEEeecc
Confidence            357999999999999999999999 99999999874

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=98.46  E-value=8.2e-07  Score=94.45  Aligned_cols=38  Identities=32%  Similarity=0.337  Sum_probs=34.3

Q ss_pred             CCCCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           37 PLISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        37 ~~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      ...+++||||||+|++|+++|..|++ |.+|+||||.+.
T Consensus         7 ~~~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~   45 (500)
T 2qa1_A            7 HHRSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVE   45 (500)
T ss_dssp             -CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC
T ss_pred             CccCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            45678999999999999999999999 999999999864

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=98.43  E-value=4.4e-07  Score=98.00  Aligned_cols=36  Identities=36%  Similarity=0.437  Sum_probs=30.7

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      ..+|||||||+|++|+++|+.|++ |.+|+||||.+.
T Consensus        47 ~~~~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~   83 (570)
T 3fmw_A           47 ALTTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVE   83 (570)
T ss_dssp             ----CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSS
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCC
Confidence            346999999999999999999999 999999999864

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.40  E-value=1.2e-06  Score=87.38  Aligned_cols=64  Identities=19%  Similarity=0.236  Sum_probs=46.8

Q ss_pred             hhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEe-cCCceEEEEecCCCCceEEEcCCccccHHHHHHhCC
Q 008331          214 EYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYD-HVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGV  287 (570)
Q Consensus       214 ~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~-~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGi  287 (570)
                      +.+.+.|++++++++|++|..+++     ++.+|.+.+ .+|+..++     .++.||+|+|..-.+.+|..+|+
T Consensus       198 ~~l~~~gv~i~~~~~v~~i~~~~~-----~v~~v~~~~~~~g~~~~i-----~~D~vi~a~G~~p~~~~l~~~gl  262 (319)
T 3cty_A          198 QEIKKRNIPYIMNAQVTEIVGDGK-----KVTGVKYKDRTTGEEKLI-----ETDGVFIYVGLIPQTSFLKDSGV  262 (319)
T ss_dssp             HHHHHTTCCEECSEEEEEEEESSS-----SEEEEEEEETTTCCEEEE-----CCSEEEECCCEEECCGGGTTSCC
T ss_pred             HHHhcCCcEEEcCCeEEEEecCCc-----eEEEEEEEEcCCCceEEE-----ecCEEEEeeCCccChHHHhhccc
Confidence            334467999999999999987654     688898875 35765555     47999999997655555554443

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=98.38  E-value=1.3e-06  Score=92.77  Aligned_cols=37  Identities=32%  Similarity=0.372  Sum_probs=33.0

Q ss_pred             CCCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           38 LISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        38 ~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      .+.++||||||+|++|+++|..|++ |.+|+||||.+.
T Consensus         9 ~~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~   46 (499)
T 2qa2_A            9 HRSDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQ   46 (499)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSS
T ss_pred             cCCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            3567999999999999999999999 999999999864

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.38  E-value=1e-06  Score=91.54  Aligned_cols=62  Identities=15%  Similarity=0.127  Sum_probs=48.6

Q ss_pred             hhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHHhCCC
Q 008331          213 LEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVG  288 (570)
Q Consensus       213 l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGiG  288 (570)
                      ....++.|+++++++.|++|..+++     ++++|++.  +|+.  +     .++.||+|+|..-...+|..+|+-
T Consensus       201 ~~~l~~~GV~i~~~~~v~~i~~~~~-----~v~~v~l~--dG~~--i-----~aD~Vv~a~G~~p~~~l~~~~gl~  262 (415)
T 3lxd_A          201 QAEHRAHGVDLRTGAAMDCIEGDGT-----KVTGVRMQ--DGSV--I-----PADIVIVGIGIVPCVGALISAGAS  262 (415)
T ss_dssp             HHHHHHTTCEEEETCCEEEEEESSS-----BEEEEEES--SSCE--E-----ECSEEEECSCCEESCHHHHHTTCC
T ss_pred             HHHHHhCCCEEEECCEEEEEEecCC-----cEEEEEeC--CCCE--E-----EcCEEEECCCCccChHHHHhCCCC
Confidence            3455678999999999999988665     78888875  6653  4     379999999987777788777763

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.37  E-value=2.1e-06  Score=86.09  Aligned_cols=55  Identities=9%  Similarity=0.119  Sum_probs=41.8

Q ss_pred             CCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEec-CCceEEEEecCCCCceEEEcCCccccHHH
Q 008331          217 DPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDH-VGARHRACLNNGGKNEIILSAGAIGSPQL  281 (570)
Q Consensus       217 ~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~-~G~~~~v~~~~~aa~~VVLaaGa~~tp~L  281 (570)
                      ++.|+++++++.|++|..+++     ++.+|.+.+. +|+..++.     ++.||+|+|..-++.+
T Consensus       220 ~~~gv~i~~~~~v~~i~~~~~-----~~~~v~~~~~~~g~~~~i~-----~D~vi~a~G~~p~~~~  275 (338)
T 3itj_A          220 KNEKIEILYNTVALEAKGDGK-----LLNALRIKNTKKNEETDLP-----VSGLFYAIGHTPATKI  275 (338)
T ss_dssp             HCTTEEEECSEEEEEEEESSS-----SEEEEEEEETTTTEEEEEE-----CSEEEECSCEEECCGG
T ss_pred             hcCCeEEeecceeEEEEcccC-----cEEEEEEEECCCCceEEEE-----eCEEEEEeCCCCChhH
Confidence            345999999999999988765     7889999863 35445553     7999999997544433

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=98.36  E-value=4.1e-07  Score=91.92  Aligned_cols=34  Identities=26%  Similarity=0.491  Sum_probs=31.9

Q ss_pred             cccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      .|||||||+|++|+.+|..|++ |.+|+|+|+.+.
T Consensus         3 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~   37 (357)
T 4a9w_A            3 SVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEAS   37 (357)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            5899999999999999999999 999999998863

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=98.35  E-value=1.4e-06  Score=90.06  Aligned_cols=38  Identities=21%  Similarity=0.244  Sum_probs=32.4

Q ss_pred             CCCCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           37 PLISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        37 ~~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      ...+.|||||||+|++|+++|..|++ |.+|+||||.+.
T Consensus        19 ~~~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~   57 (407)
T 3rp8_A           19 YFQGHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKE   57 (407)
T ss_dssp             ----CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            34567999999999999999999999 999999999864

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=98.35  E-value=8.4e-07  Score=95.62  Aligned_cols=35  Identities=31%  Similarity=0.593  Sum_probs=32.1

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      ...|||||||+|.||+.+|..|++ |.+|+|||+..
T Consensus        19 ~~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~   54 (641)
T 3cp8_A           19 SHMYDVIVVGAGHAGCEAALAVARGGLHCLLITSDL   54 (641)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             cCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEecc
Confidence            457999999999999999999999 99999999874

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=98.33  E-value=3.5e-07  Score=97.26  Aligned_cols=36  Identities=31%  Similarity=0.410  Sum_probs=33.2

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      ...+||+|||+|++|+++|..|++ |.+|+|||+.+.
T Consensus        90 ~~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~  126 (497)
T 2bry_A           90 CTNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIK  126 (497)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSS
T ss_pred             cCCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccc
Confidence            457899999999999999999999 999999999863

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=98.30  E-value=1.8e-06  Score=89.04  Aligned_cols=35  Identities=29%  Similarity=0.413  Sum_probs=32.4

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      .++||||||+|++|+++|..|++ |.+|+|+||.+.
T Consensus         5 ~~~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~   40 (399)
T 2x3n_A            5 NHIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARR   40 (399)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence            46899999999999999999999 999999999853

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=98.30  E-value=2.7e-07  Score=89.11  Aligned_cols=35  Identities=26%  Similarity=0.383  Sum_probs=32.8

Q ss_pred             cccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      ++||+|||||++|+++|+.|++ |++|+||||.+..
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~   37 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGS   37 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence            5899999999999999999999 9999999998754

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.28  E-value=5.3e-06  Score=85.72  Aligned_cols=62  Identities=10%  Similarity=0.110  Sum_probs=48.7

Q ss_pred             hhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHHhCCC
Q 008331          213 LEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVG  288 (570)
Q Consensus       213 l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGiG  288 (570)
                      ....++.|+++++++.|++|..+++     ++.+|+..  +|+.  +     .++.||+|+|..-...++..+|+-
T Consensus       191 ~~~l~~~GV~i~~~~~v~~i~~~~~-----~v~~V~~~--dG~~--i-----~aD~Vv~a~G~~p~~~l~~~~gl~  252 (404)
T 3fg2_P          191 HDRHSGAGIRMHYGVRATEIAAEGD-----RVTGVVLS--DGNT--L-----PCDLVVVGVGVIPNVEIAAAAGLP  252 (404)
T ss_dssp             HHHHHHTTCEEECSCCEEEEEEETT-----EEEEEEET--TSCE--E-----ECSEEEECCCEEECCHHHHHTTCC
T ss_pred             HHHHHhCCcEEEECCEEEEEEecCC-----cEEEEEeC--CCCE--E-----EcCEEEECcCCccCHHHHHhCCCC
Confidence            3455678999999999999988765     78888875  6753  4     379999999987777788777763

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=98.24  E-value=8e-06  Score=84.12  Aligned_cols=35  Identities=26%  Similarity=0.316  Sum_probs=32.4

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      ..+||+|||+|++|+++|..|++ |.+|+|+||.+.
T Consensus         4 ~~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   39 (397)
T 2vou_A            4 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ   39 (397)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            45899999999999999999999 999999999853

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=98.22  E-value=2.3e-06  Score=91.95  Aligned_cols=36  Identities=25%  Similarity=0.403  Sum_probs=32.7

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      ...+||||||+|++|+.+|.+|++ |.+|+|+|+++.
T Consensus        19 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~   55 (549)
T 4ap3_A           19 TTSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASG   55 (549)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCCCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            457999999999999999999999 999999999864

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=98.22  E-value=1.7e-06  Score=92.87  Aligned_cols=35  Identities=20%  Similarity=0.331  Sum_probs=32.4

Q ss_pred             CcccEEEECCCCchhHHHHhhh-c-cCeEEEEccCCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLS-Q-NATVLLLEKGGS   74 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La-~-g~~VlvLE~G~~   74 (570)
                      ..+||||||+|++|+.+|.+|+ + |.+|+|+|+.+.
T Consensus         7 ~~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~   43 (540)
T 3gwf_A            7 HTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADG   43 (540)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCC
Confidence            4689999999999999999999 8 999999999864

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=98.21  E-value=3.1e-06  Score=87.04  Aligned_cols=33  Identities=27%  Similarity=0.399  Sum_probs=31.4

Q ss_pred             cccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      ++||||||+|++|+++|..|++ |.+|+|+||.+
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   35 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT   35 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             CccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            5899999999999999999999 99999999975

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=98.19  E-value=6.9e-06  Score=88.41  Aligned_cols=36  Identities=31%  Similarity=0.458  Sum_probs=33.1

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      ..++||||||+|++|+++|..|++ |.+|+||||.+.
T Consensus        24 ~~~~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~   60 (549)
T 2r0c_A           24 PIETDVLILGGGPVGMALALDLAHRQVGHLVVEQTDG   60 (549)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCS
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            456899999999999999999999 999999999863

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=98.17  E-value=3.5e-06  Score=90.62  Aligned_cols=37  Identities=27%  Similarity=0.362  Sum_probs=33.6

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      ..++||||||+|++|+.+|.+|++ |.+|+|+|+++..
T Consensus        14 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~   51 (542)
T 1w4x_A           14 PEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDV   51 (542)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            347999999999999999999999 9999999998643

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.16  E-value=7.4e-06  Score=86.21  Aligned_cols=36  Identities=39%  Similarity=0.427  Sum_probs=33.3

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-c-----CeEEEEccCCCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-N-----ATVLLLEKGGSP   75 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g-----~~VlvLE~G~~~   75 (570)
                      +.|||||||+|++|+++|..|++ |     .+|+|||+.+..
T Consensus        29 ~~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~   70 (463)
T 3s5w_A           29 VVHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDY   70 (463)
T ss_dssp             CEESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCC
Confidence            56899999999999999999999 8     999999998754

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.15  E-value=2.5e-06  Score=84.58  Aligned_cols=56  Identities=14%  Similarity=0.046  Sum_probs=44.1

Q ss_pred             cCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHH
Q 008331          216 ADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQL  281 (570)
Q Consensus       216 ~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~L  281 (570)
                      .++.|++++++++|++|..+++     ++.+|.+...+|+..++     .++.||+|+|..-.+.+
T Consensus       193 ~~~~gv~~~~~~~v~~i~~~~~-----~~~~v~~~~~~g~~~~~-----~~D~vv~a~G~~p~~~~  248 (315)
T 3r9u_A          193 KKNEKIELITSASVDEVYGDKM-----GVAGVKVKLKDGSIRDL-----NVPGIFTFVGLNVRNEI  248 (315)
T ss_dssp             HHCTTEEEECSCEEEEEEEETT-----EEEEEEEECTTSCEEEE-----CCSCEEECSCEEECCGG
T ss_pred             HhcCCeEEEeCcEEEEEEcCCC-----cEEEEEEEcCCCCeEEe-----ecCeEEEEEcCCCCchh
Confidence            3578999999999999988765     88899888557776566     47999999996544333

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.12  E-value=3.2e-06  Score=84.44  Aligned_cols=34  Identities=32%  Similarity=0.380  Sum_probs=31.9

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      ..+||||||+|++|+.+|..|++ |.+|+|+|+.+
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~   40 (332)
T 3lzw_A            6 KVYDITIIGGGPVGLFTAFYGGMRQASVKIIESLP   40 (332)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence            35899999999999999999999 99999999986

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.12  E-value=5.6e-06  Score=82.97  Aligned_cols=34  Identities=18%  Similarity=0.213  Sum_probs=31.9

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      ..+||||||+|++|+.+|..|++ |.+|+|+|+.+
T Consensus         4 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~   38 (335)
T 2zbw_A            4 DHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLP   38 (335)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CcCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            46899999999999999999999 99999999875

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=98.11  E-value=5.1e-06  Score=87.07  Aligned_cols=37  Identities=38%  Similarity=0.509  Sum_probs=33.3

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cC--eEEEEccCCCCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NA--TVLLLEKGGSPY   76 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~--~VlvLE~G~~~~   76 (570)
                      ..+||+|||+|++|+++|..|++ |.  +|+|+|+.+...
T Consensus         5 ~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~G   44 (447)
T 2gv8_A            5 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPG   44 (447)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSS
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCC
Confidence            46899999999999999999999 98  999999986543

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=98.09  E-value=4.6e-06  Score=89.51  Aligned_cols=36  Identities=28%  Similarity=0.413  Sum_probs=32.9

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      ...+||||||+|++|+.+|.+|++ |.+|+|+|+++.
T Consensus         7 ~~~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~   43 (545)
T 3uox_A            7 SPALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGED   43 (545)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            346899999999999999999999 999999999863

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.04  E-value=1.9e-05  Score=82.28  Aligned_cols=61  Identities=15%  Similarity=0.150  Sum_probs=45.1

Q ss_pred             hhhcCCCCeEEEecceEEEEEe--cCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHHhCC
Q 008331          213 LEYADPEKLTVYLRAVVQRIKF--TETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGV  287 (570)
Q Consensus       213 l~~~~~~g~~i~~~~~V~~i~~--~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGi  287 (570)
                      ....++.|++++++++|++|..  +++     ++.+|++.  +|+.  +     .++.||+|+|.--...+|..+|+
T Consensus       198 ~~~l~~~GV~i~~~~~v~~i~~~~~~~-----~v~~v~~~--~G~~--i-----~~D~Vv~a~G~~p~~~l~~~~gl  260 (431)
T 1q1r_A          198 EHLHREAGVDIRTGTQVCGFEMSTDQQ-----KVTAVLCE--DGTR--L-----PADLVIAGIGLIPNCELASAAGL  260 (431)
T ss_dssp             HHHHHHHTCEEECSCCEEEEEECTTTC-----CEEEEEET--TSCE--E-----ECSEEEECCCEEECCHHHHHTTC
T ss_pred             HHHHHhCCeEEEeCCEEEEEEeccCCC-----cEEEEEeC--CCCE--E-----EcCEEEECCCCCcCcchhhccCC
Confidence            3445567999999999999986  333     67777764  6643  4     37999999997655567777776

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=98.03  E-value=1.6e-05  Score=83.68  Aligned_cols=34  Identities=24%  Similarity=0.318  Sum_probs=30.6

Q ss_pred             ccEEEECCCCchhHHHHhhhc----cCe---EEEEccCCCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ----NAT---VLLLEKGGSP   75 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~----g~~---VlvLE~G~~~   75 (570)
                      +||+|||||++|+++|..|++    |.+   |+|+|+.+..
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~   43 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADW   43 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSS
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCC
Confidence            699999999999999999986    788   9999998654

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=98.01  E-value=1.9e-06  Score=85.36  Aligned_cols=35  Identities=20%  Similarity=0.511  Sum_probs=31.5

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      .+.|||||||||+||+++|.+|++ |++|+|+|++.
T Consensus         4 M~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~~   39 (304)
T 4fk1_A            4 MKYIDCAVIGAGPAGLNASLVLGRARKQIALFDNNT   39 (304)
T ss_dssp             --CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred             CCCcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            457999999999999999999999 99999999874

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=97.99  E-value=2.7e-06  Score=85.23  Aligned_cols=37  Identities=32%  Similarity=0.492  Sum_probs=33.0

Q ss_pred             CcccEEEECCCCchhHHHHhhhc---cCeEEEEccCCCCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ---NATVLLLEKGGSPY   76 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~---g~~VlvLE~G~~~~   76 (570)
                      .++||+|||||+||+++|++|++   |++|+|+||++...
T Consensus        64 ~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~G  103 (326)
T 3fpz_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPG  103 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCC
Confidence            46899999999999999999974   89999999987654

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=97.98  E-value=2.6e-06  Score=84.65  Aligned_cols=34  Identities=29%  Similarity=0.510  Sum_probs=31.9

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      .+|||||||+|+||+++|.+|++ |++|+|+||+.
T Consensus         5 ~~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~   39 (312)
T 4gcm_A            5 IDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGI   39 (312)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            47999999999999999999999 99999999864

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=97.95  E-value=2.8e-06  Score=84.31  Aligned_cols=35  Identities=20%  Similarity=0.239  Sum_probs=32.4

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      .+.|||||||+|+||+++|.+|++ |++|+|+|++.
T Consensus         2 ~~~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~   37 (314)
T 4a5l_A            2 SNIHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFM   37 (314)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            346999999999999999999999 99999999875

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=97.93  E-value=4.4e-06  Score=87.72  Aligned_cols=40  Identities=30%  Similarity=0.430  Sum_probs=36.6

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYEN   78 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~~   78 (570)
                      ..++||||||+|.+|+++|.+|++ |++|+||||.+..++.
T Consensus         9 ~~~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~   49 (453)
T 2bcg_G            9 DTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGE   49 (453)
T ss_dssp             CCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGG
T ss_pred             cccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCcc
Confidence            457999999999999999999999 9999999999887653

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=97.92  E-value=3.6e-06  Score=89.72  Aligned_cols=39  Identities=21%  Similarity=0.383  Sum_probs=35.5

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc--cCeEEEEccCCCCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ--NATVLLLEKGGSPYE   77 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~--g~~VlvLE~G~~~~~   77 (570)
                      +.++||||||||.+|+++|++|++  |.+|+|||+.+..++
T Consensus         8 ~~~~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~GG   48 (513)
T 4gde_A            8 DISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGG   48 (513)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCCG
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCcC
Confidence            447999999999999999999986  899999999988765

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=97.87  E-value=1.2e-05  Score=85.96  Aligned_cols=35  Identities=34%  Similarity=0.503  Sum_probs=31.3

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-------------cCeEEEEccCCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-------------NATVLLLEKGGS   74 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-------------g~~VlvLE~G~~   74 (570)
                      ..+||||||+|++|+++|..|++             |.+|+|||+...
T Consensus         6 ~~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~~   53 (526)
T 2pyx_A            6 PITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPDV   53 (526)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCCC
Confidence            46899999999999999999987             689999999754

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=97.83  E-value=0.00025  Score=74.67  Aligned_cols=61  Identities=18%  Similarity=0.131  Sum_probs=44.3

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHHhCC
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGV  287 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGi  287 (570)
                      +...+++.|++++++++|++|..+++     ++. |.+.  +|+  ++     .++.||+|+|..-.+.|+..+|+
T Consensus       208 l~~~l~~~GV~i~~~~~v~~i~~~~~-----~v~-v~~~--~g~--~i-----~aD~Vv~a~G~~p~~~l~~~~gl  268 (472)
T 3iwa_A          208 LRHDLEKNDVVVHTGEKVVRLEGENG-----KVA-RVIT--DKR--TL-----DADLVILAAGVSPNTQLARDAGL  268 (472)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEESSS-----BEE-EEEE--SSC--EE-----ECSEEEECSCEEECCHHHHHHTC
T ss_pred             HHHHHHhcCCEEEeCCEEEEEEccCC-----eEE-EEEe--CCC--EE-----EcCEEEECCCCCcCHHHHHhCCc
Confidence            33455678999999999999987554     554 5554  565  34     37999999998755567766665

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=97.80  E-value=1.5e-05  Score=84.70  Aligned_cols=39  Identities=21%  Similarity=0.183  Sum_probs=30.4

Q ss_pred             CCCCCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           36 APLISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        36 ~~~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      .+.++-|||||||+|++|+++|..|.+ |...+++|++..
T Consensus        34 tp~~~i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~   73 (501)
T 4b63_A           34 TPQDELHDLLCVGFGPASLAIAIALHDALDPRLNKSASNI   73 (501)
T ss_dssp             CCTTSCEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC---
T ss_pred             CCCCCcCcEEEEcccHHHHHHHHHHHhcCCCceEEecccc
Confidence            344567999999999999999999988 777777776653

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=97.79  E-value=7.9e-06  Score=85.07  Aligned_cols=36  Identities=47%  Similarity=0.634  Sum_probs=32.9

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYE   77 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~   77 (570)
                      |||||||+|++|+++|++|++ |.+|+|||+.+...+
T Consensus         2 ~dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~GG   38 (431)
T 3k7m_X            2 YDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGG   38 (431)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBT
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCccC
Confidence            799999999999999999999 999999999765543

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=97.78  E-value=0.00017  Score=74.54  Aligned_cols=59  Identities=17%  Similarity=0.052  Sum_probs=44.6

Q ss_pred             hhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHHhCC
Q 008331          214 EYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGV  287 (570)
Q Consensus       214 ~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGi  287 (570)
                      ...++.|+++++++.|++|..++      ++.+|+..  +|+.  +     .++.||+|+|..-...+|..+|+
T Consensus       193 ~~l~~~GV~i~~~~~v~~i~~~~------~~~~v~~~--dg~~--i-----~aD~Vv~a~G~~p~~~l~~~~gl  251 (410)
T 3ef6_A          193 GLLTELGVQVELGTGVVGFSGEG------QLEQVMAS--DGRS--F-----VADSALICVGAEPADQLARQAGL  251 (410)
T ss_dssp             HHHHHHTCEEECSCCEEEEECSS------SCCEEEET--TSCE--E-----ECSEEEECSCEEECCHHHHHTTC
T ss_pred             HHHHHCCCEEEeCCEEEEEeccC------cEEEEEEC--CCCE--E-----EcCEEEEeeCCeecHHHHHhCCC
Confidence            34566799999999999997643      45567664  6653  3     37999999998777678877776

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=97.77  E-value=1.1e-05  Score=81.94  Aligned_cols=36  Identities=22%  Similarity=0.298  Sum_probs=33.2

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      ..++||||||+|.+|+++|++|++ |.+|+||||...
T Consensus         4 ~~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~~   40 (363)
T 1c0p_A            4 HSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLP   40 (363)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccCC
Confidence            457899999999999999999999 999999999863

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=97.69  E-value=1.6e-05  Score=75.25  Aligned_cols=33  Identities=39%  Similarity=0.442  Sum_probs=31.4

Q ss_pred             cccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      +|||||||+|++|+.+|..|++ |.+|+|||++.
T Consensus         3 ~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~   36 (232)
T 2cul_A            3 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSL   36 (232)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            6899999999999999999999 99999999984

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=97.68  E-value=1.9e-05  Score=81.25  Aligned_cols=39  Identities=31%  Similarity=0.466  Sum_probs=33.9

Q ss_pred             CCCCCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           36 APLISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        36 ~~~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      +....++||||||+|++|+++|..|++ |.+|+|+||.+.
T Consensus        21 M~~~~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   60 (398)
T 2xdo_A           21 MNLLSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDND   60 (398)
T ss_dssp             --CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSS
T ss_pred             ccccCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            444567999999999999999999999 999999999864

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=97.65  E-value=2e-05  Score=84.09  Aligned_cols=46  Identities=28%  Similarity=0.461  Sum_probs=35.3

Q ss_pred             eeeecccCCCCCCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           28 TFVKDATSAPLISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        28 ~~~~~~~~~~~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      +++.....++...+|||||||+|++|+++|.+|++ |++|+|+|+.+
T Consensus        19 ~~m~~~~~~~~~~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~   65 (519)
T 3qfa_A           19 SHMNGPEDLPKSYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVT   65 (519)
T ss_dssp             -------CCCSSCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCCCcccccCcCCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccC
Confidence            34444555556678999999999999999999999 99999999964

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=97.65  E-value=2.3e-05  Score=80.23  Aligned_cols=40  Identities=30%  Similarity=0.463  Sum_probs=35.7

Q ss_pred             CCCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCC
Q 008331           38 LISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYE   77 (570)
Q Consensus        38 ~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~   77 (570)
                      ....+||+|||+|++|+++|.+|++ |.+|+|||+.+...+
T Consensus        26 ~~~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG   66 (397)
T 3hdq_A           26 ESKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGG   66 (397)
T ss_dssp             CCCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSG
T ss_pred             cCCCCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCCC
Confidence            3457999999999999999999999 999999999876654

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=97.63  E-value=2.1e-05  Score=82.97  Aligned_cols=42  Identities=29%  Similarity=0.400  Sum_probs=33.8

Q ss_pred             CCCCCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCC
Q 008331           36 APLISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYE   77 (570)
Q Consensus        36 ~~~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~   77 (570)
                      ++....+||||||+|.+|+++|+.|++ |.+|+|||+.+...+
T Consensus        11 ~~~~~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~GG   53 (478)
T 2ivd_A           11 MPRTTGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGG   53 (478)
T ss_dssp             ------CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBT
T ss_pred             CCCCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCc
Confidence            455667899999999999999999999 999999999987654

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=97.63  E-value=2.2e-05  Score=82.90  Aligned_cols=35  Identities=29%  Similarity=0.427  Sum_probs=32.8

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      ++|||||||+|++|+++|.+|++ |++|+|+||++.
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~   37 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKG   37 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCc
Confidence            46999999999999999999999 999999999863

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=97.62  E-value=2.4e-05  Score=79.57  Aligned_cols=37  Identities=43%  Similarity=0.600  Sum_probs=33.7

Q ss_pred             cccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYE   77 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~   77 (570)
                      ++|++|||+|.+|+++|.+|++ |.+|+|+|+++...+
T Consensus         1 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG   38 (367)
T 1i8t_A            1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGG   38 (367)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSG
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCc
Confidence            3799999999999999999999 999999999876554

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=97.61  E-value=3.2e-05  Score=80.24  Aligned_cols=39  Identities=21%  Similarity=0.218  Sum_probs=35.1

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-c-CeEEEEccCCCCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-N-ATVLLLEKGGSPYE   77 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g-~~VlvLE~G~~~~~   77 (570)
                      .+++||||||||.+|+++|++|++ | .+|+|+|+.+...+
T Consensus         4 ~~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~GG   44 (424)
T 2b9w_A            4 SKDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGG   44 (424)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSST
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCCC
Confidence            356899999999999999999999 9 89999999887654

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=97.60  E-value=2.6e-05  Score=78.73  Aligned_cols=31  Identities=13%  Similarity=0.254  Sum_probs=29.8

Q ss_pred             cEEEECCCCchhHHHHhhhc-c------CeEEEEccCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-N------ATVLLLEKGG   73 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g------~~VlvLE~G~   73 (570)
                      ||||||+|.+|+++|+.|++ |      .+|+|||++.
T Consensus         2 dVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~   39 (351)
T 3g3e_A            2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF   39 (351)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred             cEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence            89999999999999999999 9      8999999985

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=97.60  E-value=3e-05  Score=79.91  Aligned_cols=39  Identities=26%  Similarity=0.416  Sum_probs=35.1

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc--cCeEEEEccCCCCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ--NATVLLLEKGGSPYE   77 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~--g~~VlvLE~G~~~~~   77 (570)
                      .+++||||||+|.+|+++|++|++  |.+|+|||+.+..++
T Consensus         5 ~~~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~GG   45 (399)
T 1v0j_A            5 TARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGG   45 (399)
T ss_dssp             CCSCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSG
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCC
Confidence            457999999999999999999998  799999999987654

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=97.58  E-value=2.9e-05  Score=83.01  Aligned_cols=38  Identities=32%  Similarity=0.434  Sum_probs=34.5

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYE   77 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~   77 (570)
                      ..+||||||||.+|+++|.+|++ |.+|+|||+.+...+
T Consensus         3 ~~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG   41 (520)
T 1s3e_A            3 NKCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGG   41 (520)
T ss_dssp             CBCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBT
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCC
Confidence            45799999999999999999999 999999999877644

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=97.56  E-value=4.1e-05  Score=81.12  Aligned_cols=39  Identities=26%  Similarity=0.327  Sum_probs=35.5

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYE   77 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~   77 (570)
                      .+.+||+|||+|.+|+++|++|++ |.+|+|||+.+...+
T Consensus         9 ~~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG   48 (489)
T 2jae_A            9 KGSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGG   48 (489)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCCC
Confidence            356899999999999999999999 999999999987655

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=97.56  E-value=4.2e-05  Score=79.69  Aligned_cols=40  Identities=25%  Similarity=0.390  Sum_probs=36.2

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYEN   78 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~~   78 (570)
                      .+++|+||||+|.+|+++|.+|++ |.+|+|+|+.+...+.
T Consensus         4 ~~~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~   44 (433)
T 1d5t_A            4 DEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGE   44 (433)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTT
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCcccc
Confidence            457999999999999999999999 9999999999876653

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=97.54  E-value=2.8e-05  Score=81.67  Aligned_cols=37  Identities=22%  Similarity=0.275  Sum_probs=33.8

Q ss_pred             cccEEEECCCCchhHHHHhhhc-c------CeEEEEccCCCCCC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ-N------ATVLLLEKGGSPYE   77 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~-g------~~VlvLE~G~~~~~   77 (570)
                      .+||||||||.+|+++|++|++ |      .+|+|||+.+...+
T Consensus         5 ~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~GG   48 (470)
T 3i6d_A            5 KKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGG   48 (470)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSCT
T ss_pred             CCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCCc
Confidence            5899999999999999999999 9      99999999876553

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=97.54  E-value=3.5e-05  Score=79.67  Aligned_cols=35  Identities=34%  Similarity=0.443  Sum_probs=32.0

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCe-EEEEccCCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NAT-VLLLEKGGS   74 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~-VlvLE~G~~   74 (570)
                      .++||||||+|++|+++|..|++ |.+ |+||||.+.
T Consensus         3 ~~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~   39 (410)
T 3c96_A            3 EPIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSE   39 (410)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCC
Confidence            35899999999999999999999 999 999999864

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=97.53  E-value=3.5e-05  Score=81.57  Aligned_cols=33  Identities=21%  Similarity=0.358  Sum_probs=31.3

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKG   72 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G   72 (570)
                      .+|||||||+|++|+++|.+|++ |++|+|+||+
T Consensus        25 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~   58 (484)
T 3o0h_A           25 FDFDLFVIGSGSGGVRAARLAGALGKRVAIAEEY   58 (484)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCcCEEEEEeCC
Confidence            46999999999999999999999 9999999994

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=97.52  E-value=4.8e-05  Score=77.20  Aligned_cols=38  Identities=24%  Similarity=0.253  Sum_probs=34.4

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccC-CCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKG-GSPY   76 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G-~~~~   76 (570)
                      ...+||+|||+|++|+++|++|++ |.+|+|||+. +...
T Consensus        42 ~~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~vG   81 (376)
T 2e1m_A           42 GPPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVG   81 (376)
T ss_dssp             CSCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCCB
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccC
Confidence            457899999999999999999999 9999999999 6544

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=97.52  E-value=3.2e-05  Score=82.58  Aligned_cols=38  Identities=32%  Similarity=0.378  Sum_probs=34.8

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-c-CeEEEEccCCCCCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-N-ATVLLLEKGGSPYE   77 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g-~~VlvLE~G~~~~~   77 (570)
                      ..+||||||||.+|+++|++|++ | .+|+|||+.+..++
T Consensus         7 ~~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riGG   46 (516)
T 1rsg_A            7 AKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGG   46 (516)
T ss_dssp             EEEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSBT
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCC
Confidence            45899999999999999999999 9 99999999987665

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=97.50  E-value=3.5e-05  Score=81.67  Aligned_cols=38  Identities=29%  Similarity=0.431  Sum_probs=32.4

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPY   76 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~   76 (570)
                      ..+|||||||+|++|+++|.+|++ |.+|+|+||.+...
T Consensus        23 m~~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~G   61 (491)
T 3urh_A           23 MMAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYG   61 (491)
T ss_dssp             ---CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSS
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence            346999999999999999999999 99999999876543

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=97.50  E-value=4.6e-05  Score=77.81  Aligned_cols=35  Identities=31%  Similarity=0.302  Sum_probs=32.5

Q ss_pred             cccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      .+||||||+|++|+++|..|++ |.+|+|+||.+..
T Consensus        11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~   46 (379)
T 3alj_A           11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSEL   46 (379)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Confidence            5899999999999999999999 9999999998643

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=97.50  E-value=3.7e-05  Score=80.94  Aligned_cols=36  Identities=28%  Similarity=0.472  Sum_probs=32.7

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      .+|||||||+|++|+++|.+|++ |.+|+|+||.+..
T Consensus         3 ~~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~   39 (466)
T 3l8k_A            3 LKYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGEL   39 (466)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSS
T ss_pred             ccceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCC
Confidence            36999999999999999999999 9999999976644

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=97.49  E-value=3.8e-05  Score=81.46  Aligned_cols=38  Identities=29%  Similarity=0.406  Sum_probs=34.6

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYE   77 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~   77 (570)
                      +++||||||+|.+|+++|.+|++ |.+|+|||+.+...+
T Consensus        38 ~~~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG   76 (495)
T 2vvm_A           38 GPWDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGG   76 (495)
T ss_dssp             CCEEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBSBT
T ss_pred             cCCCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCCCC
Confidence            45899999999999999999999 999999999876654

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=97.49  E-value=4.2e-05  Score=81.66  Aligned_cols=33  Identities=36%  Similarity=0.655  Sum_probs=31.4

Q ss_pred             cccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      +||+||||+|++|.++|.++++ |+||+|+|+..
T Consensus        42 dYDviVIG~GpaG~~aA~~aa~~G~kValIE~~~   75 (542)
T 4b1b_A           42 DYDYVVIGGGPGGMASAKEAAAHGARVLLFDYVK   75 (542)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTCCEEEECCCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence            6999999999999999999999 99999999865

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=97.47  E-value=4.6e-05  Score=79.77  Aligned_cols=38  Identities=29%  Similarity=0.323  Sum_probs=34.5

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYE   77 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~   77 (570)
                      .++||||||+|.+|+++|.+|++ |.+|+|||+.+...+
T Consensus         4 ~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG   42 (453)
T 2yg5_A            4 LQRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGG   42 (453)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCT
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCC
Confidence            36899999999999999999999 999999999877654

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=97.46  E-value=5.2e-05  Score=79.96  Aligned_cols=36  Identities=28%  Similarity=0.406  Sum_probs=32.9

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cC--eEEEEccCCCCCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NA--TVLLLEKGGSPYE   77 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~--~VlvLE~G~~~~~   77 (570)
                      +||||||||.+|+++|++|++ |.  +|+|||+.+...+
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~GG   41 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGG   41 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSSBT
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCCCC
Confidence            699999999999999999999 98  9999999876543

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=97.46  E-value=5.1e-05  Score=79.81  Aligned_cols=33  Identities=24%  Similarity=0.417  Sum_probs=31.2

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKG   72 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G   72 (570)
                      .+|||||||+|++|+++|.+|++ |.+|+|+||+
T Consensus         4 ~~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk~   37 (463)
T 4dna_A            4 FDYDLFVIGGGSGGVRSGRLAAALGKKVAIAEEF   37 (463)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHhCCCEEEEEeCC
Confidence            36999999999999999999999 9999999994

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=97.46  E-value=4.9e-05  Score=75.75  Aligned_cols=34  Identities=38%  Similarity=0.670  Sum_probs=31.9

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKG   72 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G   72 (570)
                      ...+||+|||+|++|+.+|..|++ |.+|+|+|+.
T Consensus         6 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~   40 (325)
T 2q7v_A            6 AHDYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG   40 (325)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCC
Confidence            346899999999999999999999 9999999997

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=97.44  E-value=6.1e-05  Score=76.24  Aligned_cols=37  Identities=24%  Similarity=0.288  Sum_probs=33.0

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      .+.+||||||+|++|+++|..|++ |++|+|+|+.+..
T Consensus        12 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~   49 (360)
T 3ab1_A           12 HDMRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQL   49 (360)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence            346999999999999999999999 9999999998643

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=97.44  E-value=6.7e-05  Score=79.71  Aligned_cols=39  Identities=26%  Similarity=0.283  Sum_probs=34.5

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYE   77 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~   77 (570)
                      .+.+||||||+|.+|+++|++|++ |.+|+|||+.+...+
T Consensus        11 ~~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG   50 (504)
T 1sez_A           11 SSAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGG   50 (504)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCC
Confidence            346899999999999999999999 999999999987654

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=97.43  E-value=5.4e-05  Score=80.08  Aligned_cols=34  Identities=32%  Similarity=0.432  Sum_probs=31.6

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKG   72 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G   72 (570)
                      ..+|||||||+|++|+++|.+|++ |++|+|+||+
T Consensus         7 ~~~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~   41 (483)
T 3dgh_A            7 SYDYDLIVIGGGSAGLACAKEAVLNGARVACLDFV   41 (483)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCEEEEEEec
Confidence            457999999999999999999999 9999999964

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=97.42  E-value=5.8e-05  Score=73.84  Aligned_cols=33  Identities=33%  Similarity=0.640  Sum_probs=31.1

Q ss_pred             cccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      .|||+|||+|++|+.+|..|++ |.+|+|+|++.
T Consensus         2 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~   35 (297)
T 3fbs_A            2 KFDVIIIGGSYAGLSAALQLGRARKNILLVDAGE   35 (297)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            4899999999999999999999 99999999875

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=97.42  E-value=5.4e-05  Score=80.25  Aligned_cols=33  Identities=30%  Similarity=0.467  Sum_probs=31.6

Q ss_pred             cccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      +||+||||+|++|+++|.+|++ |++|+|+|++.
T Consensus         8 ~~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~~   41 (492)
T 3ic9_A            8 NVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGGA   41 (492)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTCSCEEEEESSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            5999999999999999999999 99999999975

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=97.41  E-value=5e-05  Score=80.20  Aligned_cols=35  Identities=29%  Similarity=0.630  Sum_probs=32.5

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      ...|||||||+|++|+++|.+|++ |++|+|+|++.
T Consensus        18 ~~~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~~   53 (478)
T 3dk9_A           18 VASYDYLVIGGGSGGLASARRAAELGARAAVVESHK   53 (478)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence            457999999999999999999999 99999999874

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=97.41  E-value=5e-05  Score=79.06  Aligned_cols=34  Identities=29%  Similarity=0.293  Sum_probs=30.9

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      ..+||||||+|++|+++|..|++ |.+|+||||.+
T Consensus        21 m~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           21 MKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             --CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            35799999999999999999999 99999999975

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=97.40  E-value=5.5e-05  Score=80.13  Aligned_cols=34  Identities=24%  Similarity=0.447  Sum_probs=31.8

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKG   72 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G   72 (570)
                      ..+|||||||+|++|+++|.+|++ |.+|+|+||.
T Consensus         4 ~~~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~   38 (488)
T 3dgz_A            4 QQSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYV   38 (488)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEEec
Confidence            457999999999999999999999 9999999984

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=97.40  E-value=6.6e-05  Score=67.81  Aligned_cols=32  Identities=44%  Similarity=0.728  Sum_probs=30.8

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      ||++|||+|++|+.+|..|++ |.+|+|+|+++
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~   34 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGR   34 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            799999999999999999999 99999999986

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=97.37  E-value=0.00047  Score=71.61  Aligned_cols=57  Identities=16%  Similarity=0.209  Sum_probs=41.8

Q ss_pred             hcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHHhCC
Q 008331          215 YADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGV  287 (570)
Q Consensus       215 ~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGi  287 (570)
                      ..++.|+++++++.|+++.  .+        ++.+.+.+|...++.     ++.||+++|.-. +.++..+|.
T Consensus       209 ~l~~~GV~~~~~~~v~~v~--~~--------~~~~~~~~g~~~~i~-----~d~vi~~~G~~~-~~~~~~~~~  265 (430)
T 3hyw_A          209 LFAERNIDWIANVAVKAIE--PD--------KVIYEDLNGNTHEVP-----AKFTMFMPSFQG-PEVVASAGD  265 (430)
T ss_dssp             HHHHTTCEEECSCEEEEEC--SS--------EEEEECTTSCEEEEE-----CSEEEEECEEEC-CHHHHTTCT
T ss_pred             HHHhCCeEEEeCceEEEEe--CC--------ceEEEeeCCCceEee-----cceEEEeccCCC-chHHHhccc
Confidence            4566899999999999983  33        355666677766774     799999999644 466777764

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.34  E-value=0.00011  Score=77.38  Aligned_cols=38  Identities=29%  Similarity=0.365  Sum_probs=34.1

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPY   76 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~   76 (570)
                      +.+||+||||+|++|+++|.+|++ |.+|+|+|+.+...
T Consensus         4 ~~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~G   42 (470)
T 1dxl_A            4 SDENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALG   42 (470)
T ss_dssp             CCCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSC
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcc
Confidence            346999999999999999999999 99999999986543

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=97.32  E-value=8.6e-05  Score=78.04  Aligned_cols=34  Identities=29%  Similarity=0.560  Sum_probs=32.0

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      +.|||||||+|++|+.+|.+|++ |.+|+|+|++.
T Consensus         3 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~   37 (463)
T 2r9z_A            3 QHFDLIAIGGGSGGLAVAEKAAAFGKRVALIESKA   37 (463)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             ccCcEEEECCCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            46999999999999999999999 99999999984

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=97.32  E-value=0.00014  Score=80.38  Aligned_cols=39  Identities=31%  Similarity=0.294  Sum_probs=35.1

Q ss_pred             CCCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCC
Q 008331           38 LISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPY   76 (570)
Q Consensus        38 ~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~   76 (570)
                      ....+||||||+|++|+.+|..|++ |.+|+|+|+++...
T Consensus       388 ~~~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~G  427 (690)
T 3k30_A          388 KESDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLG  427 (690)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSC
T ss_pred             ccccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence            4567899999999999999999999 99999999987544

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=97.32  E-value=9.7e-05  Score=77.76  Aligned_cols=35  Identities=29%  Similarity=0.516  Sum_probs=32.6

Q ss_pred             cccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      +|||||||+|++|+.+|.+|++ |.+|+|+|+.+..
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~   37 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGAL   37 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCc
Confidence            5899999999999999999999 9999999998644

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=97.31  E-value=0.00012  Score=78.31  Aligned_cols=66  Identities=18%  Similarity=0.259  Sum_probs=47.2

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHH-HHHHhCC
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQ-LLMLSGV  287 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~-LLl~SGi  287 (570)
                      +...+++.|++++++++|++|..++++    ++.++.+...+|+ .++     .++.||+|+|.--... +|..+|+
T Consensus       261 l~~~l~~~GV~i~~~~~V~~i~~~~~~----~v~~~~v~~~~G~-~~i-----~aD~Vv~A~G~~p~~~~~l~~~gl  327 (523)
T 1mo9_A          261 VLDRMKEQGMEIISGSNVTRIEEDANG----RVQAVVAMTPNGE-MRI-----ETDFVFLGLGEQPRSAELAKILGL  327 (523)
T ss_dssp             HHHHHHHTTCEEESSCEEEEEEECTTS----BEEEEEEEETTEE-EEE-----ECSCEEECCCCEECCHHHHHHHTC
T ss_pred             HHHHHHhCCcEEEECCEEEEEEEcCCC----ceEEEEEEECCCc-EEE-----EcCEEEECcCCccCCccCHHHcCC
Confidence            334556789999999999999876543    6766666555664 244     3799999999865555 6666665

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=97.31  E-value=8.6e-05  Score=77.72  Aligned_cols=34  Identities=29%  Similarity=0.537  Sum_probs=32.0

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      +.||+||||+|++|+.+|.+|++ |.+|+|+|++.
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~   37 (450)
T 1ges_A            3 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAKE   37 (450)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCeEEEEcCCC
Confidence            46899999999999999999999 99999999984

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=97.31  E-value=9.7e-05  Score=77.85  Aligned_cols=36  Identities=31%  Similarity=0.357  Sum_probs=33.0

Q ss_pred             cccEEEECCCCchhHHHHhhhc-c--CeEEEEccCCCCC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ-N--ATVLLLEKGGSPY   76 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~-g--~~VlvLE~G~~~~   76 (570)
                      .+||||||+|.+|+++|++|++ |  .+|+|||+.+...
T Consensus         4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~G   42 (475)
T 3lov_A            4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLG   42 (475)
T ss_dssp             SCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSB
T ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCCC
Confidence            5799999999999999999999 9  9999999977654

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=97.31  E-value=8.7e-05  Score=78.43  Aligned_cols=37  Identities=24%  Similarity=0.430  Sum_probs=33.2

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      +.+|||||||+|++|+++|.+|++ |.+|+|+|+.+..
T Consensus         4 ~~~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~   41 (482)
T 1ojt_A            4 DAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTL   41 (482)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            346999999999999999999999 9999999996543

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=97.29  E-value=0.00011  Score=77.23  Aligned_cols=34  Identities=24%  Similarity=0.374  Sum_probs=32.0

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      ..+||||||+|++|+.+|.+|++ |.+|+|+|++.
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~   37 (467)
T 1zk7_A            3 PPVQVAVIGSGGAAMAAALKAVEQGAQVTLIERGT   37 (467)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            46899999999999999999999 99999999984

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=97.28  E-value=0.00013  Score=77.40  Aligned_cols=39  Identities=28%  Similarity=0.338  Sum_probs=35.1

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYE   77 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~   77 (570)
                      ...+||||||+|++|+.+|..|++ |.+|+|||+.+...+
T Consensus        31 ~~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg   70 (498)
T 2iid_A           31 SNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGG   70 (498)
T ss_dssp             SSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBT
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCC
Confidence            457899999999999999999999 999999999876554

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=97.28  E-value=9.8e-05  Score=77.97  Aligned_cols=34  Identities=35%  Similarity=0.693  Sum_probs=32.1

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      .+|||||||+|++|+++|.+|++ |.+|+|+|++.
T Consensus        10 ~~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~~   44 (479)
T 2hqm_A           10 KHYDYLVIGGGSGGVASARRAASYGAKTLLVEAKA   44 (479)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTSCCEEEEESSC
T ss_pred             ccCCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            46999999999999999999999 99999999974

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=97.27  E-value=0.0001  Score=72.78  Aligned_cols=31  Identities=32%  Similarity=0.609  Sum_probs=29.9

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cC-eEEEEccC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NA-TVLLLEKG   72 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~-~VlvLE~G   72 (570)
                      |||+|||+|++|+++|..|++ |. +|+|+|+.
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~   34 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKG   34 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCSSEEEECSS
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCcEEEEcCC
Confidence            799999999999999999999 99 99999986

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=97.26  E-value=0.00014  Score=74.46  Aligned_cols=37  Identities=22%  Similarity=0.334  Sum_probs=33.8

Q ss_pred             cccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYE   77 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~   77 (570)
                      ++|++|||+|.+|+++|.+|++ |.+|+|+|+.+...+
T Consensus         3 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG   40 (384)
T 2bi7_A            3 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGG   40 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSG
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcCC
Confidence            4799999999999999999999 999999999876653

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=97.26  E-value=0.00011  Score=77.09  Aligned_cols=35  Identities=29%  Similarity=0.465  Sum_probs=32.3

Q ss_pred             cccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      +||+||||+|++|+.+|.+|++ |.+|+|+|+++..
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~   36 (455)
T 2yqu_A            1 MYDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKAL   36 (455)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             CCCEEEECCChhHHHHHHHHHHCCCeEEEEeCCCCC
Confidence            4899999999999999999999 9999999998643

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=97.26  E-value=0.00012  Score=73.50  Aligned_cols=34  Identities=29%  Similarity=0.290  Sum_probs=31.7

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      +||||||+|.+|+.+|..|++ |.+|+|+|+.+..
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~~   36 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPKR   36 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTTS
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEeccCCc
Confidence            699999999999999999999 9999999998743

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.25  E-value=0.00012  Score=77.73  Aligned_cols=33  Identities=42%  Similarity=0.723  Sum_probs=31.5

Q ss_pred             cccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      +|||||||+|++|+.+|.+|++ |.+|+|+|++.
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~   35 (500)
T 1onf_A            2 VYDLIVIGGGSGGMAAARRAARHNAKVALVEKSR   35 (500)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            5899999999999999999999 99999999985

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=97.25  E-value=0.00011  Score=74.38  Aligned_cols=33  Identities=36%  Similarity=0.580  Sum_probs=31.4

Q ss_pred             cccEEEECCCCchhHHHHhhhc-cC-eEEEEccCC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ-NA-TVLLLEKGG   73 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~-g~-~VlvLE~G~   73 (570)
                      ++||+|||+|++|+.+|.+|++ |. +|+|+|+.+
T Consensus         4 ~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~   38 (369)
T 3d1c_A            4 HHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT   38 (369)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             cCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC
Confidence            5899999999999999999999 99 999999986

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=97.24  E-value=0.00014  Score=76.82  Aligned_cols=39  Identities=23%  Similarity=0.330  Sum_probs=34.7

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-c-CeEEEEccCCCCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-N-ATVLLLEKGGSPYE   77 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g-~~VlvLE~G~~~~~   77 (570)
                      ...+||+|||+|++|+++|++|++ | .+|+|+|+.+...+
T Consensus         7 ~~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~GG   47 (484)
T 4dsg_A            7 LLTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGG   47 (484)
T ss_dssp             CCSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSSSG
T ss_pred             ccCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCCCC
Confidence            346899999999999999999999 8 89999999986653

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=97.23  E-value=0.00011  Score=77.43  Aligned_cols=37  Identities=22%  Similarity=0.256  Sum_probs=33.5

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      ...||+||||+|++|+++|.+|++ |.+|+|+|+.+..
T Consensus         4 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~   41 (474)
T 1zmd_A            4 PIDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETL   41 (474)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence            346899999999999999999999 9999999998643

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=97.23  E-value=0.00012  Score=72.12  Aligned_cols=31  Identities=29%  Similarity=0.461  Sum_probs=29.3

Q ss_pred             cccEEEECCCCchhHHHHhhhc-cCeEEEEcc
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEK   71 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~   71 (570)
                      +|||||||+|++|+.+|.+|++ |.+|+|+|+
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~   32 (310)
T 1fl2_A            1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGE   32 (310)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeC
Confidence            4899999999999999999999 999999985

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.21  E-value=0.00012  Score=76.69  Aligned_cols=33  Identities=30%  Similarity=0.460  Sum_probs=31.3

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKG   72 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G   72 (570)
                      .+||+||||+|++|+.+|.+|++ |.+|+|+|+.
T Consensus         2 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~   35 (455)
T 1ebd_A            2 IETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG   35 (455)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            35899999999999999999999 9999999997

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=97.21  E-value=0.00014  Score=76.85  Aligned_cols=36  Identities=31%  Similarity=0.428  Sum_probs=32.7

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      .+|||||||+|++|+++|.+|++ |++|+|+|+.+..
T Consensus         4 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~   40 (478)
T 1v59_A            4 KSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKL   40 (478)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCc
Confidence            46899999999999999999999 9999999996543

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.20  E-value=0.00014  Score=76.25  Aligned_cols=35  Identities=26%  Similarity=0.381  Sum_probs=32.0

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      ...||+||||+|++|+.+|.+|++ |.+|+|+|++.
T Consensus         3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~   38 (458)
T 1lvl_A            3 TIQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQA   38 (458)
T ss_dssp             CEECSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCEEEEEccCC
Confidence            346899999999999999999999 99999999943

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=97.18  E-value=0.00019  Score=77.48  Aligned_cols=41  Identities=27%  Similarity=0.266  Sum_probs=37.6

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYENP   79 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~~~   79 (570)
                      ..+|||||||+|..|+++|..|++ |.+||+|||.+.+.++.
T Consensus         6 ~~~~D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~~~~gg~~   47 (650)
T 1vg0_A            6 PSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNW   47 (650)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGG
T ss_pred             CCcCCEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCcccCcc
Confidence            347999999999999999999999 99999999999988653

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=97.17  E-value=0.00013  Score=72.40  Aligned_cols=33  Identities=21%  Similarity=0.321  Sum_probs=30.8

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKG   72 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G   72 (570)
                      ..+||+|||+|++|+++|..|++ |.+|+|+|+.
T Consensus         4 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~   37 (320)
T 1trb_A            4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGM   37 (320)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEccC
Confidence            35899999999999999999999 9999999965

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=97.16  E-value=0.00015  Score=76.28  Aligned_cols=32  Identities=25%  Similarity=0.464  Sum_probs=30.9

Q ss_pred             cccEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKG   72 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G   72 (570)
                      +|||||||+|++|+++|.+|++ |.+|+|+|+.
T Consensus         3 ~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~   35 (464)
T 2a8x_A            3 HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPK   35 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC
Confidence            5899999999999999999999 9999999998

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=97.15  E-value=0.00013  Score=73.01  Aligned_cols=34  Identities=24%  Similarity=0.365  Sum_probs=31.5

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKG   72 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G   72 (570)
                      ...+||+|||+|++|+++|..|++ |++|+|+|+.
T Consensus        12 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~   46 (335)
T 2a87_A           12 HPVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGT   46 (335)
T ss_dssp             CCCEEEEEECCHHHHHHHHHHHHHTTCCCEEECCS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence            456899999999999999999999 9999999965

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=97.14  E-value=0.00023  Score=77.91  Aligned_cols=36  Identities=33%  Similarity=0.462  Sum_probs=32.9

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc--cCeEEEEccCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ--NATVLLLEKGGS   74 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~--g~~VlvLE~G~~   74 (570)
                      ..++||||||+|++|+++|..|++  |.+|+||||.+.
T Consensus        30 ~~~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~   67 (639)
T 2dkh_A           30 PSQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEG   67 (639)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSS
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            357999999999999999999998  899999999864

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=97.11  E-value=0.00022  Score=73.20  Aligned_cols=32  Identities=28%  Similarity=0.428  Sum_probs=30.0

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      .|+|||+|++|+++|..|++ |.+|+|+||.+.
T Consensus         3 ~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~   35 (412)
T 4hb9_A            3 HVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSA   35 (412)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            59999999999999999999 999999999754

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=97.10  E-value=0.00026  Score=78.75  Aligned_cols=39  Identities=26%  Similarity=0.290  Sum_probs=34.7

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYE   77 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~   77 (570)
                      ...+||||||+|++|+++|..|++ |.+|+|||+++...+
T Consensus       334 ~~~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~gg  373 (776)
T 4gut_A          334 YHNKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIGG  373 (776)
T ss_dssp             GTSCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCT
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEecccceec
Confidence            346899999999999999999999 999999999876543

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=97.10  E-value=0.00015  Score=72.41  Aligned_cols=32  Identities=25%  Similarity=0.283  Sum_probs=30.3

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEcc
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEK   71 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~   71 (570)
                      ..+||||||+|++|+++|..|++ |.+|+|+|+
T Consensus         7 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~   39 (333)
T 1vdc_A            7 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEG   39 (333)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCeEEEEec
Confidence            35899999999999999999999 999999997

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=97.08  E-value=0.00022  Score=75.03  Aligned_cols=38  Identities=32%  Similarity=0.330  Sum_probs=33.2

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cC-eEEEEccCCCCCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NA-TVLLLEKGGSPYE   77 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~-~VlvLE~G~~~~~   77 (570)
                      ..+||+|||+|.+|+++|.+|++ |. +|+|+|+++...+
T Consensus         3 ~~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~gg   42 (472)
T 1b37_A            3 VGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGG   42 (472)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCCCC
Confidence            46899999999999999999999 98 8999999976554

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=97.07  E-value=0.0002  Score=75.22  Aligned_cols=33  Identities=36%  Similarity=0.581  Sum_probs=31.7

Q ss_pred             cccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      +||+||||+|++|+.+|.+|++ |.+|+|+|++.
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~   39 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE   39 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            5899999999999999999999 99999999986

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=97.06  E-value=0.00034  Score=73.19  Aligned_cols=38  Identities=16%  Similarity=0.121  Sum_probs=34.2

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPY   76 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~   76 (570)
                      ...+||+|||||++|+++|..|++ |++|+|+|+.+...
T Consensus       120 ~~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~G  158 (456)
T 2vdc_G          120 ELGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMG  158 (456)
T ss_dssp             SCCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCC
Confidence            356899999999999999999999 99999999987543

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=97.04  E-value=0.00032  Score=75.13  Aligned_cols=35  Identities=34%  Similarity=0.536  Sum_probs=31.6

Q ss_pred             CcccEEEECCCCchhHHHHhhhc----cCeEEEEccCCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ----NATVLLLEKGGS   74 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~----g~~VlvLE~G~~   74 (570)
                      ..+||||||+|++|+++|..|++    |.+|+|||+...
T Consensus         4 ~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~   42 (538)
T 2aqj_A            4 PIKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAAI   42 (538)
T ss_dssp             BCCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence            46899999999999999999997    699999999754

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=96.98  E-value=0.00029  Score=76.51  Aligned_cols=34  Identities=26%  Similarity=0.472  Sum_probs=31.7

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKG   72 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G   72 (570)
                      ...|||||||+|+||+++|.+|++ |++|+|+|+.
T Consensus       105 ~~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~  139 (598)
T 2x8g_A          105 KYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYV  139 (598)
T ss_dssp             SSSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             cccccEEEECCCccHHHHHHHHHhCCCeEEEEecc
Confidence            457999999999999999999999 9999999984

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=96.96  E-value=0.00035  Score=71.24  Aligned_cols=33  Identities=24%  Similarity=0.448  Sum_probs=30.3

Q ss_pred             cEEEECCCCchhHHHHhhhc---cCeEEEEccCCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ---NATVLLLEKGGSP   75 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~---g~~VlvLE~G~~~   75 (570)
                      ||||||+|++|+++|..|++   |.+|+|+||.+..
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~   37 (381)
T 3c4a_A            2 KILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQ   37 (381)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTT
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCC
Confidence            89999999999999999997   7999999998643

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=96.89  E-value=0.0004  Score=74.02  Aligned_cols=34  Identities=26%  Similarity=0.390  Sum_probs=31.3

Q ss_pred             CCCcccEEEECCCCchhHHHHhhhc-cCeEEEEcc
Q 008331           38 LISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEK   71 (570)
Q Consensus        38 ~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~   71 (570)
                      ....|||+|||+|++|+++|..|++ |.+|+|+|+
T Consensus       209 ~~~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~  243 (521)
T 1hyu_A          209 KRDAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGE  243 (521)
T ss_dssp             TSCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECS
T ss_pred             ccCcccEEEECCcHHHHHHHHHHHhCCCeEEEEEC
Confidence            3457999999999999999999999 999999986

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=96.88  E-value=0.00064  Score=75.51  Aligned_cols=38  Identities=29%  Similarity=0.278  Sum_probs=34.5

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPY   76 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~   76 (570)
                      ...+||+|||+|+||+.+|..|++ |.+|+|+|+.+...
T Consensus       387 ~~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~G  425 (729)
T 1o94_A          387 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIG  425 (729)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTT
T ss_pred             cCCceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcC
Confidence            457899999999999999999999 99999999987654

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=96.86  E-value=0.00033  Score=74.58  Aligned_cols=34  Identities=38%  Similarity=0.543  Sum_probs=29.1

Q ss_pred             cccEEEECCCCchhHHHHhhhc----cCeEEEEccCCC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ----NATVLLLEKGGS   74 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~----g~~VlvLE~G~~   74 (570)
                      .+||||||+|++|+++|..|++    |.+|+|||+...
T Consensus         2 ~~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~~   39 (511)
T 2weu_A            2 IRSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGNV   39 (511)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC---
T ss_pred             cceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCCC
Confidence            4799999999999999999997    699999999764

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=96.85  E-value=0.00057  Score=73.40  Aligned_cols=35  Identities=34%  Similarity=0.479  Sum_probs=31.6

Q ss_pred             CcccEEEECCCCchhHHHHhhhc----cCeEEEEccCCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ----NATVLLLEKGGS   74 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~----g~~VlvLE~G~~   74 (570)
                      ..+||||||+|++|+++|..|++    |.+|+|||+...
T Consensus        24 ~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~   62 (550)
T 2e4g_A           24 KIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDI   62 (550)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCCC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCCC
Confidence            46899999999999999999997    589999999754

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=96.84  E-value=0.00051  Score=72.67  Aligned_cols=31  Identities=19%  Similarity=0.491  Sum_probs=29.4

Q ss_pred             CcccEEEECCCCchhHHHHhhhc--cCeEEEEc
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ--NATVLLLE   70 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~--g~~VlvLE   70 (570)
                      .+||+||||+|++|+++|.+|++  |++|+|+|
T Consensus         2 ~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE   34 (490)
T 1fec_A            2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVID   34 (490)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEE
T ss_pred             ccccEEEECCCHHHHHHHHHHHHHcCCEEEEEe
Confidence            36899999999999999999998  89999999

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=96.84  E-value=0.00054  Score=69.98  Aligned_cols=61  Identities=11%  Similarity=0.083  Sum_probs=43.2

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHHhCC
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGV  287 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGi  287 (570)
                      +....++.|++++++++|++|..+++     . ..|++  .+|+.  +     .++.||+|+|.--...+|..+|+
T Consensus       193 l~~~l~~~gv~i~~~~~v~~i~~~~~-----~-~~v~~--~~g~~--i-----~~d~vv~a~G~~p~~~l~~~~g~  253 (384)
T 2v3a_A          193 VQAGLEGLGVRFHLGPVLASLKKAGE-----G-LEAHL--SDGEV--I-----PCDLVVSAVGLRPRTELAFAAGL  253 (384)
T ss_dssp             HHHHHHTTTCEEEESCCEEEEEEETT-----E-EEEEE--TTSCE--E-----EESEEEECSCEEECCHHHHHTTC
T ss_pred             HHHHHHHcCCEEEeCCEEEEEEecCC-----E-EEEEE--CCCCE--E-----ECCEEEECcCCCcCHHHHHHCCC
Confidence            34455678999999999999987654     2 23443  36643  3     36999999998655567777766

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=96.82  E-value=0.0007  Score=74.55  Aligned_cols=38  Identities=18%  Similarity=0.297  Sum_probs=34.4

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPY   76 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~   76 (570)
                      ...+||||||+|+||+.+|..|++ |.+|+|+|+.+...
T Consensus       371 ~~~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~g  409 (671)
T 1ps9_A          371 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIG  409 (671)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCC
Confidence            456899999999999999999999 99999999987654

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=96.78  E-value=0.00049  Score=75.53  Aligned_cols=35  Identities=37%  Similarity=0.611  Sum_probs=31.8

Q ss_pred             CcccEEEECCCCchhHHHHhhhc------cCeEEEEccCCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ------NATVLLLEKGGS   74 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~------g~~VlvLE~G~~   74 (570)
                      .++||||||+|++|+++|..|++      |.+|+||||.+.
T Consensus         7 ~~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~   47 (665)
T 1pn0_A            7 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST   47 (665)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCC
Confidence            36899999999999999999997      899999999753

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=96.78  E-value=0.0007  Score=74.35  Aligned_cols=40  Identities=30%  Similarity=0.275  Sum_probs=35.5

Q ss_pred             CCCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCC
Q 008331           38 LISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYE   77 (570)
Q Consensus        38 ~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~   77 (570)
                      ....+||+|||+|++|+++|..|++ |.+|+|+|+.+...+
T Consensus       104 ~~~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg  144 (662)
T 2z3y_A          104 TKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG  144 (662)
T ss_dssp             SSCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBT
T ss_pred             ccCCCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence            3456899999999999999999999 999999999876554

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=96.77  E-value=0.00062  Score=69.09  Aligned_cols=34  Identities=38%  Similarity=0.526  Sum_probs=30.9

Q ss_pred             cccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      .-|+||||+|+||+.+|.+|++ | +|+|+|+++..
T Consensus         8 ~~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~   42 (367)
T 1xhc_A            8 GSKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVP   42 (367)
T ss_dssp             -CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSC
T ss_pred             CCcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCC
Confidence            3599999999999999999999 9 99999998754

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=96.77  E-value=0.00053  Score=72.60  Aligned_cols=33  Identities=15%  Similarity=0.386  Sum_probs=30.3

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc--cCeEEEEcc
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ--NATVLLLEK   71 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~--g~~VlvLE~   71 (570)
                      ...||+||||+|++|+++|.+|++  |++|+|+|+
T Consensus         5 ~~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~   39 (495)
T 2wpf_A            5 SKAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDV   39 (495)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHHHCCCEEEEES
T ss_pred             ccccCEEEECCChhHHHHHHHHHHhcCCeEEEEec
Confidence            346999999999999999999998  899999993

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=96.75  E-value=0.00057  Score=72.27  Aligned_cols=35  Identities=11%  Similarity=0.277  Sum_probs=32.4

Q ss_pred             cccEEEECCCCchhHHHHhhhc-c---CeEEEEccCCCC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ-N---ATVLLLEKGGSP   75 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~-g---~~VlvLE~G~~~   75 (570)
                      ++||||||+|++|+.+|.+|++ |   .+|+|+|+.+..
T Consensus        35 ~~dvvIIGaG~aGl~aA~~l~~~g~~~~~V~lie~~~~~   73 (490)
T 2bc0_A           35 GSKIVVVGANHAGTACIKTMLTNYGDANEIVVFDQNSNI   73 (490)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHHGGGSEEEEECSSSCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcCCCCCeEEEEECCCCC
Confidence            5899999999999999999999 8   999999998743

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=96.73  E-value=0.00056  Score=72.53  Aligned_cols=33  Identities=24%  Similarity=0.464  Sum_probs=30.5

Q ss_pred             cccEEEECCCCchhHHHHhhhc----cCeEEEEccCC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ----NATVLLLEKGG   73 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~----g~~VlvLE~G~   73 (570)
                      .|||||||+|++|+++|.+|++    |.+|+|+|++.
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~   38 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG   38 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC
Confidence            4899999999999999999987    67999999986

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=96.65  E-value=0.0007  Score=77.56  Aligned_cols=63  Identities=16%  Similarity=0.173  Sum_probs=45.4

Q ss_pred             hcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEe--c---CCceEEEEecCCCCceEEEcCCccccHHHHHHhC
Q 008331          215 YADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYD--H---VGARHRACLNNGGKNEIILSAGAIGSPQLLMLSG  286 (570)
Q Consensus       215 ~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~--~---~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SG  286 (570)
                      .+++.|++|++++.|++|..++++    ++.+|++.+  .   +|+..++     .++.||+|+|-.-+..++...|
T Consensus       325 ~l~~~GV~v~~~~~v~~i~~~~~~----~v~~v~~~~~~~~~~~G~~~~i-----~~D~Vv~a~G~~P~~~l~~~~~  392 (965)
T 2gag_A          325 QAVADGVQVISGSVVVDTEADENG----ELSAIVVAELDEARELGGTQRF-----EADVLAVAGGFNPVVHLHSQRQ  392 (965)
T ss_dssp             HHHHTTCCEEETEEEEEEEECTTS----CEEEEEEEEECTTCCEEEEEEE-----ECSEEEEECCEEECCHHHHHTT
T ss_pred             HHHhCCeEEEeCCEeEEEeccCCC----CEEEEEEEeccccCCCCceEEE-----EcCEEEECCCcCcChHHHHhCC
Confidence            345679999999999999875222    788898875  2   2544455     3799999999766666766554

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=96.64  E-value=0.00084  Score=70.17  Aligned_cols=34  Identities=21%  Similarity=0.178  Sum_probs=31.2

Q ss_pred             ccEEEECCCCchhHHHHhhhc---cCeEEEEccCCCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ---NATVLLLEKGGSP   75 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~---g~~VlvLE~G~~~   75 (570)
                      +|+||||+|++|+.+|.+|++   |.+|+|+|+.+..
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~   37 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNI   37 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCC
Confidence            589999999999999999997   7999999998753

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=96.63  E-value=0.001  Score=68.48  Aligned_cols=36  Identities=14%  Similarity=0.243  Sum_probs=32.3

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cC--eEEEEccCCCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NA--TVLLLEKGGSP   75 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~--~VlvLE~G~~~   75 (570)
                      ..+|+||||+|++|+.+|.+|++ |.  +|+|+|+.+..
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~   44 (408)
T 2gqw_A            6 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAER   44 (408)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSC
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCC
Confidence            46899999999999999999999 86  59999998754

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=96.63  E-value=0.0012  Score=73.98  Aligned_cols=39  Identities=31%  Similarity=0.293  Sum_probs=35.1

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYE   77 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~   77 (570)
                      ...+||+|||+|++|+++|+.|++ |++|+|+|+.+...+
T Consensus       276 ~~~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~GG  315 (852)
T 2xag_A          276 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG  315 (852)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcCCC
Confidence            456899999999999999999999 999999999876654

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=96.60  E-value=0.001  Score=69.47  Aligned_cols=35  Identities=20%  Similarity=0.329  Sum_probs=31.9

Q ss_pred             ccEEEECCCCchhHHHHhhhc---cCeEEEEccCCCCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ---NATVLLLEKGGSPY   76 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~---g~~VlvLE~G~~~~   76 (570)
                      .||||||+|++|+++|.+|++   |.+|+|+|+++...
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g   40 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVG   40 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCS
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCc
Confidence            589999999999999999998   68999999998654

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=96.59  E-value=0.0012  Score=69.03  Aligned_cols=36  Identities=22%  Similarity=0.347  Sum_probs=32.2

Q ss_pred             cccEEEECCCCchhHHHHhhhc---cCeEEEEccCCCCC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ---NATVLLLEKGGSPY   76 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~---g~~VlvLE~G~~~~   76 (570)
                      .+||||||+|++|+.+|.+|++   +.+|+|+|+.+...
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~   41 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVS   41 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccc
Confidence            4799999999999999999998   57999999998643

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=96.58  E-value=0.0011  Score=70.10  Aligned_cols=60  Identities=18%  Similarity=0.289  Sum_probs=43.8

Q ss_pred             hhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHHhCC
Q 008331          213 LEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGV  287 (570)
Q Consensus       213 l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGi  287 (570)
                      ....++.|+++++++.|++|..+++     ++ .|+.  .+|+.  +     .++.||+|+|..-++.++..+|+
T Consensus       233 ~~~l~~~GV~v~~~~~V~~i~~~~~-----~~-~v~l--~dG~~--i-----~aD~Vv~a~G~~pn~~l~~~~gl  292 (493)
T 1m6i_A          233 MEKVRREGVKVMPNAIVQSVGVSSG-----KL-LIKL--KDGRK--V-----ETDHIVAAVGLEPNVELAKTGGL  292 (493)
T ss_dssp             HHHHHTTTCEEECSCCEEEEEEETT-----EE-EEEE--TTSCE--E-----EESEEEECCCEEECCTTHHHHTC
T ss_pred             HHHHHhcCCEEEeCCEEEEEEecCC-----eE-EEEE--CCCCE--E-----ECCEEEECCCCCccHHHHHHcCC
Confidence            3455678999999999999986544     43 4554  36753  4     36999999998766667777776

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=96.49  E-value=0.01  Score=63.16  Aligned_cols=33  Identities=12%  Similarity=0.313  Sum_probs=30.1

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      -.++|||+|..|+-+|..|++ |.+|.++|+++.
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~  248 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEP  248 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCc
Confidence            469999999999999999999 999999998853

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=96.44  E-value=0.0016  Score=68.12  Aligned_cols=37  Identities=30%  Similarity=0.370  Sum_probs=32.9

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-c--CeEEEEccCCCCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-N--ATVLLLEKGGSPY   76 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g--~~VlvLE~G~~~~   76 (570)
                      ..+|+||||+|++|+.+|..|++ |  .+|+|+|+.+...
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~g   44 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPF   44 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSC
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCC
Confidence            45799999999999999999999 8  9999999987643

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=96.43  E-value=0.0015  Score=68.83  Aligned_cols=35  Identities=37%  Similarity=0.622  Sum_probs=31.4

Q ss_pred             cccEEEECCCCchhHHHHhhhc---cCeEEEEccCCCC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ---NATVLLLEKGGSP   75 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~---g~~VlvLE~G~~~   75 (570)
                      .+||||||+|++|+.+|.+|++   |.+|+|+|+.+..
T Consensus        36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~   73 (480)
T 3cgb_A           36 SMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIY   73 (480)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCC
T ss_pred             cceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCC
Confidence            4699999999999999999998   7899999998754

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=96.40  E-value=0.014  Score=59.40  Aligned_cols=33  Identities=21%  Similarity=0.398  Sum_probs=30.3

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      -+++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus       146 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  179 (384)
T 2v3a_A          146 RRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQ  179 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcc
Confidence            479999999999999999999 999999998753

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=96.38  E-value=0.0018  Score=70.07  Aligned_cols=37  Identities=24%  Similarity=0.478  Sum_probs=33.0

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc---cCeEEEEccCCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ---NATVLLLEKGGSP   75 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~---g~~VlvLE~G~~~   75 (570)
                      ....||||||+|++|+++|.+|++   |.+|+|+|+.+..
T Consensus        34 ~~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~   73 (588)
T 3ics_A           34 WGSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYI   73 (588)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCS
T ss_pred             ccCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCc
Confidence            345799999999999999999998   6899999999864

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=96.37  E-value=0.0017  Score=74.91  Aligned_cols=37  Identities=16%  Similarity=0.188  Sum_probs=33.2

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cC-eEEEEccCCCCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NA-TVLLLEKGGSPY   76 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~-~VlvLE~G~~~~   76 (570)
                      ..+||+|||||+||+++|..|++ |+ +|+|+|+.+...
T Consensus       186 ~~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~G  224 (1025)
T 1gte_A          186 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVG  224 (1025)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCS
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCC
Confidence            46899999999999999999999 98 799999986543

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=96.36  E-value=0.0015  Score=68.05  Aligned_cols=34  Identities=24%  Similarity=0.354  Sum_probs=30.9

Q ss_pred             ccEEEECCCCchhHHHHhhhc---cCeEEEEccCCCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ---NATVLLLEKGGSP   75 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~---g~~VlvLE~G~~~   75 (570)
                      .|+||||+|++|+.+|.+|++   |.+|+|+|+.+..
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~   37 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFI   37 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCcc
Confidence            389999999999999999998   7899999998754

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=96.30  E-value=0.0014  Score=69.24  Aligned_cols=36  Identities=39%  Similarity=0.456  Sum_probs=32.4

Q ss_pred             cccEEEECCCCchhHHHHhhhccCeEEEEccCCCCC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQNATVLLLEKGGSPY   76 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~g~~VlvLE~G~~~~   76 (570)
                      .+||||||+|++|+.+|.+|++..+|+|+|+++...
T Consensus       108 ~~dVvIIGgG~aGl~aA~~L~~~~~V~vie~~~~~G  143 (493)
T 1y56_A          108 VVDVAIIGGGPAGIGAALELQQYLTVALIEERGWLG  143 (493)
T ss_dssp             EESCCEECCSHHHHHHHHHHTTTCCEEEECTTSSSS
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCEEEEeCCCCCC
Confidence            579999999999999999998768999999998654

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=96.30  E-value=0.019  Score=57.59  Aligned_cols=59  Identities=15%  Similarity=0.161  Sum_probs=43.1

Q ss_pred             CCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHHhC
Q 008331          218 PEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSG  286 (570)
Q Consensus       218 ~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SG  286 (570)
                      +.|++++++++|++|..+++     ++.+|.+...+|+...+.     ++.||+|+|.--.+.+|..+|
T Consensus       214 ~~gv~i~~~~~v~~i~~~~~-----~v~~v~~~~~~g~~~~i~-----~D~vi~a~G~~p~~~~l~~~~  272 (360)
T 3ab1_A          214 NGTIDVYLETEVASIEESNG-----VLTRVHLRSSDGSKWTVE-----ADRLLILIGFKSNLGPLARWD  272 (360)
T ss_dssp             HTSEEEESSEEEEEEEEETT-----EEEEEEEEETTCCEEEEE-----CSEEEECCCBCCSCGGGGGSS
T ss_pred             cCceEEEcCcCHHHhccCCC-----ceEEEEEEecCCCeEEEe-----CCEEEECCCCCCCHHHHHhhc
Confidence            35899999999999988765     788888874567655553     799999999644434544433

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=96.22  E-value=0.019  Score=56.15  Aligned_cols=54  Identities=17%  Similarity=0.233  Sum_probs=41.0

Q ss_pred             CCeEEEecceEEEEEecCCCCCCCeEEEEEEEe-cCCceEEEEecCCCCceEEEcCCccccHHHH
Q 008331          219 EKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYD-HVGARHRACLNNGGKNEIILSAGAIGSPQLL  282 (570)
Q Consensus       219 ~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~-~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LL  282 (570)
                      .|++++++++|++|..+++     ++.+|++.+ .+|+..++.     ++.||+|+|..-.+.+|
T Consensus       193 ~gv~v~~~~~v~~i~~~~~-----~v~~v~~~~~~~g~~~~i~-----~D~vi~a~G~~p~~~~l  247 (310)
T 1fl2_A          193 KNVDIILNAQTTEVKGDGS-----KVVGLEYRDRVSGDIHNIE-----LAGIFVQIGLLPNTNWL  247 (310)
T ss_dssp             TTEEEESSEEEEEEEESSS-----SEEEEEEEETTTCCEEEEE-----CSEEEECSCEEESCGGG
T ss_pred             CCeEEecCCceEEEEcCCC-----cEEEEEEEECCCCcEEEEE-----cCEEEEeeCCccCchHH
Confidence            5899999999999987654     788999986 346655663     79999999965444444

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=96.20  E-value=0.0023  Score=66.92  Aligned_cols=35  Identities=37%  Similarity=0.398  Sum_probs=31.8

Q ss_pred             cccEEEECCCCchhHHHHhhhc--------cCeEEEEccCCCC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ--------NATVLLLEKGGSP   75 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~--------g~~VlvLE~G~~~   75 (570)
                      .+||+|||+|++|+.+|..|++        |.+|+|+|+.+..
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~   45 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTP   45 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCC
Confidence            5799999999999999999987        7999999998754

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=96.15  E-value=0.017  Score=56.83  Aligned_cols=56  Identities=5%  Similarity=0.071  Sum_probs=41.2

Q ss_pred             CCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEec-C-CceEEEEecCCCCceEEEcCCccccHHHH
Q 008331          217 DPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDH-V-GARHRACLNNGGKNEIILSAGAIGSPQLL  282 (570)
Q Consensus       217 ~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~-~-G~~~~v~~~~~aa~~VVLaaGa~~tp~LL  282 (570)
                      ++.|++++++++|++|..+++     ++.+|.+.+. + |+..++.     ++.||+|+|.--.+.+|
T Consensus       195 ~~~gv~i~~~~~v~~i~~~~~-----~v~~v~~~~~~~~g~~~~i~-----~D~vv~a~G~~p~~~~~  252 (320)
T 1trb_A          195 ENGNIILHTNRTLEEVTGDQM-----GVTGVRLRDTQNSDNIESLD-----VAGLFVAIGHSPNTAIF  252 (320)
T ss_dssp             HTSSEEEECSCEEEEEEECSS-----SEEEEEEECCTTCCCCEEEE-----CSEEEECSCEEESCGGG
T ss_pred             ccCCeEEEcCceeEEEEcCCC-----ceEEEEEEeccCCCceEEEE-----cCEEEEEeCCCCChHHh
Confidence            346899999999999987665     7888998752 2 5445553     79999999975444443

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=96.05  E-value=0.0027  Score=65.27  Aligned_cols=33  Identities=24%  Similarity=0.344  Sum_probs=30.2

Q ss_pred             cEEEECCCCchhHHHHhhhc----cCeEEEEccCCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ----NATVLLLEKGGSP   75 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~----g~~VlvLE~G~~~   75 (570)
                      ||||||+|++|+.+|.+|++    |.+|+|+|+.+..
T Consensus         3 ~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~   39 (409)
T 3h8l_A            3 KVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFS   39 (409)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEE
T ss_pred             eEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCc
Confidence            79999999999999999987    6999999999743

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=96.05  E-value=0.0043  Score=64.44  Aligned_cols=34  Identities=26%  Similarity=0.417  Sum_probs=30.9

Q ss_pred             ccEEEECCCCchhHHHHhhhc----cCeEEEEccCCCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ----NATVLLLEKGGSP   75 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~----g~~VlvLE~G~~~   75 (570)
                      .||||||+|++|+.+|..|++    |.+|+|+|+.+..
T Consensus         5 ~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~   42 (437)
T 3sx6_A            5 AHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYF   42 (437)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEE
T ss_pred             CcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCC
Confidence            589999999999999999987    6899999999753

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=95.88  E-value=0.0039  Score=67.02  Aligned_cols=35  Identities=26%  Similarity=0.472  Sum_probs=31.3

Q ss_pred             ccEEEECCCCchhHHHHhhhc---cCeEEEEccCCCCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ---NATVLLLEKGGSPY   76 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~---g~~VlvLE~G~~~~   76 (570)
                      .||+|||+|++|+.+|.+|++   +.+|+|+|+.+...
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~   39 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVS   39 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCcc
Confidence            379999999999999999998   58999999998643

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=95.87  E-value=0.0052  Score=63.76  Aligned_cols=33  Identities=18%  Similarity=0.461  Sum_probs=29.4

Q ss_pred             cEEEECCCCchhHHHHhhhc-c--CeEEEEccCCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-N--ATVLLLEKGGSP   75 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g--~~VlvLE~G~~~   75 (570)
                      -|||||+|+||+.+|.+|++ |  .+|+|+|+++..
T Consensus         2 KVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~   37 (437)
T 4eqs_A            2 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDM   37 (437)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCC
Confidence            38999999999999999998 7  579999998754

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=95.87  E-value=0.0029  Score=69.11  Aligned_cols=35  Identities=31%  Similarity=0.415  Sum_probs=32.4

Q ss_pred             cccEEEECCCCchhHHHHhhhc-c--------CeEEEEccCC-CC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ-N--------ATVLLLEKGG-SP   75 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~-g--------~~VlvLE~G~-~~   75 (570)
                      ..+|+|||+|++|+++|++|++ |        .+|+|+|+.+ ..
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~  100 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSF  100 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBG
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccc
Confidence            5799999999999999999999 8        9999999987 55

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=95.84  E-value=0.017  Score=60.41  Aligned_cols=32  Identities=28%  Similarity=0.461  Sum_probs=29.7

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus       170 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~  202 (464)
T 2eq6_A          170 KRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMP  202 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCC
Confidence            469999999999999999999 99999999885

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=95.81  E-value=0.015  Score=60.71  Aligned_cols=32  Identities=34%  Similarity=0.508  Sum_probs=29.6

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      -.++|||+|.+|+-+|..|++ |.+|.|+|+++
T Consensus       168 ~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~  200 (455)
T 2yqu_A          168 KRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMD  200 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCC
Confidence            369999999999999999999 99999999875

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=95.73  E-value=0.016  Score=60.87  Aligned_cols=33  Identities=24%  Similarity=0.399  Sum_probs=29.9

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus       184 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  217 (478)
T 1v59_A          184 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQ  217 (478)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCc
Confidence            469999999999999999999 999999998863

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=95.68  E-value=0.018  Score=60.01  Aligned_cols=31  Identities=26%  Similarity=0.348  Sum_probs=28.6

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      .++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus       169 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~  200 (450)
T 1ges_A          169 RVAVVGAGYIGVELGGVINGLGAKTHLFEMFD  200 (450)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCEEEEEEeCC
Confidence            69999999999999999999 99999999875

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=95.65  E-value=0.012  Score=61.80  Aligned_cols=31  Identities=26%  Similarity=0.461  Sum_probs=27.0

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      .++|||+|..|+-+|..|++ |.+|.++|+++
T Consensus       187 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~  218 (479)
T 2hqm_A          187 KVVVVGAGYIGIELAGVFHGLGSETHLVIRGE  218 (479)
T ss_dssp             EEEEECSSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCceEEEEeCC
Confidence            58899999999999998888 89999998775

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=95.63  E-value=0.007  Score=61.65  Aligned_cols=38  Identities=13%  Similarity=0.158  Sum_probs=32.7

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPY   76 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~   76 (570)
                      .+..-|||||+|+||+.+|.+|+. +.+|+|+|+.+...
T Consensus         7 ~~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~   45 (385)
T 3klj_A            7 HKSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLP   45 (385)
T ss_dssp             -CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCC
T ss_pred             cCCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCC
Confidence            345679999999999999999977 89999999997643

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=95.61  E-value=0.041  Score=54.34  Aligned_cols=59  Identities=14%  Similarity=0.157  Sum_probs=41.4

Q ss_pred             CCCeEEEecceEEEEEecCCCCCCCeEEEEEEEec-CCceEEEEecCCCCceEEEcCCccccHHHHHHhCC
Q 008331          218 PEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDH-VGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGV  287 (570)
Q Consensus       218 ~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~-~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGi  287 (570)
                      +.|+++++++.|++|..+ +     ++.+|.+.+. +|+..++     .++.||+|+|.--...+|..+|+
T Consensus       203 ~~gv~v~~~~~v~~i~~~-~-----~~~~v~~~~~~~g~~~~i-----~~D~vi~a~G~~p~~~~l~~~~~  262 (335)
T 2zbw_A          203 EGRLEVLTPYELRRVEGD-E-----RVRWAVVFHNQTQEELAL-----EVDAVLILAGYITKLGPLANWGL  262 (335)
T ss_dssp             TTSSEEETTEEEEEEEES-S-----SEEEEEEEETTTCCEEEE-----ECSEEEECCCEEEECGGGGGSCC
T ss_pred             cCCeEEecCCcceeEccC-C-----CeeEEEEEECCCCceEEE-----ecCEEEEeecCCCCchHhhhcce
Confidence            358899999999999873 3     6778888743 5654555     37999999997544445544443

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=95.60  E-value=0.0059  Score=62.49  Aligned_cols=58  Identities=9%  Similarity=-0.022  Sum_probs=41.1

Q ss_pred             hcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHHhCCC
Q 008331          215 YADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVG  288 (570)
Q Consensus       215 ~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGiG  288 (570)
                      ..++.|++++++++|..+..+...    .  .|+  ..+|+.  +     .++.||++.|- ..+.++..||+-
T Consensus       211 ~l~~~gi~v~~~~~v~~v~~~~~~----~--~v~--~~~g~~--i-----~~D~vi~~~g~-~~~~~~~~~gl~  268 (401)
T 3vrd_B          211 GTENALIEWHPGPDAAVVKTDTEA----M--TVE--TSFGET--F-----KAAVINLIPPQ-RAGKIAQSASLT  268 (401)
T ss_dssp             TSTTCSEEEECTTTTCEEEEETTT----T--EEE--ETTSCE--E-----ECSEEEECCCE-EECHHHHHTTCC
T ss_pred             HHHhcCcEEEeCceEEEEEecccc----e--EEE--cCCCcE--E-----EeeEEEEecCc-CCchhHhhcccc
Confidence            456789999999999999877652    1  233  346764  3     36899999885 344678888773

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=95.56  E-value=0.043  Score=53.54  Aligned_cols=55  Identities=13%  Similarity=0.137  Sum_probs=40.8

Q ss_pred             CCeEEEecceEEEEEecCCCCCCCeEEEEEEEe-cCCceEEEEecCCCCceEEEcCCccccHHHHH
Q 008331          219 EKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYD-HVGARHRACLNNGGKNEIILSAGAIGSPQLLM  283 (570)
Q Consensus       219 ~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~-~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl  283 (570)
                      .|+++++++.|++|..+++     ++.+|.+.+ .+|+..++.     ++.||+|+|..-...+|.
T Consensus       192 ~gv~v~~~~~v~~i~~~~~-----~v~~v~~~~~~~g~~~~i~-----~D~vi~a~G~~p~~~~l~  247 (311)
T 2q0l_A          192 DKIEFLTPYVVEEIKGDAS-----GVSSLSIKNTATNEKRELV-----VPGFFIFVGYDVNNAVLK  247 (311)
T ss_dssp             TTEEEETTEEEEEEEEETT-----EEEEEEEEETTTCCEEEEE-----CSEEEECSCEEECCGGGB
T ss_pred             CCeEEEeCCEEEEEECCCC-----cEeEEEEEecCCCceEEEe-----cCEEEEEecCccChhhhh
Confidence            5899999999999987654     777888874 256655564     799999999754444443

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=95.52  E-value=0.048  Score=58.13  Aligned_cols=34  Identities=9%  Similarity=0.242  Sum_probs=31.2

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      -.|+|||+|+.|+-+|..|++ +.+|.|+++.+.+
T Consensus       186 krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~~  220 (545)
T 3uox_A          186 KRVGVIGTGATGVQIIPIAAETAKELYVFQRTPNW  220 (545)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCCC
T ss_pred             CeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCCc
Confidence            369999999999999999999 9999999999853

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=95.51  E-value=0.073  Score=55.54  Aligned_cols=32  Identities=25%  Similarity=0.467  Sum_probs=28.8

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus       175 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~  207 (468)
T 2qae_A          175 KTMVVIGGGVIGLELGSVWARLGAEVTVVEFAP  207 (468)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCEEEEEecCC
Confidence            368999999999999999999 99999999875

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=95.41  E-value=0.0089  Score=63.18  Aligned_cols=36  Identities=11%  Similarity=0.187  Sum_probs=32.1

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      .++..|||||+|.||+.+|.+|++ +.+|+|||+.++
T Consensus        40 ~~KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~   76 (502)
T 4g6h_A           40 SDKPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSY   76 (502)
T ss_dssp             CSSCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSE
T ss_pred             CCCCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCC
Confidence            345679999999999999999999 999999999864

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=95.35  E-value=0.041  Score=57.43  Aligned_cols=31  Identities=26%  Similarity=0.365  Sum_probs=28.4

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      .++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus       168 ~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~  199 (463)
T 2r9z_A          168 RVAIIGAGYIGIELAGLLRSFGSEVTVVALED  199 (463)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCEEEEEEcCC
Confidence            68999999999999999999 99999999875

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=95.31  E-value=0.073  Score=56.40  Aligned_cols=54  Identities=17%  Similarity=0.276  Sum_probs=41.4

Q ss_pred             CCeEEEecceEEEEEecCCCCCCCeEEEEEEEec-CCceEEEEecCCCCceEEEcCCccccHHHH
Q 008331          219 EKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDH-VGARHRACLNNGGKNEIILSAGAIGSPQLL  282 (570)
Q Consensus       219 ~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~-~G~~~~v~~~~~aa~~VVLaaGa~~tp~LL  282 (570)
                      .|+++++++.|++|..+++     ++++|.+.+. +|+...+.     ++.||+|+|..-++.+|
T Consensus       404 ~gV~v~~~~~v~~i~~~~~-----~v~~v~~~~~~~g~~~~i~-----~D~vi~a~G~~pn~~~l  458 (521)
T 1hyu_A          404 KNVDIILNAQTTEVKGDGS-----KVVGLEYRDRVSGDIHSVA-----LAGIFVQIGLLPNTHWL  458 (521)
T ss_dssp             TTEEEECSEEEEEEEECSS-----SEEEEEEEETTTCCEEEEE-----CSEEEECCCEEESCGGG
T ss_pred             CCcEEEeCCEEEEEEcCCC-----cEEEEEEEeCCCCceEEEE-----cCEEEECcCCCCCchHH
Confidence            5899999999999987655     7889999863 47656664     78999999965444443

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=95.26  E-value=0.043  Score=57.72  Aligned_cols=33  Identities=27%  Similarity=0.433  Sum_probs=29.2

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      -.++|||+|..|+-+|..|++ |.+|.++|+++.
T Consensus       175 k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~  208 (492)
T 3ic9_A          175 KSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGS  208 (492)
T ss_dssp             SEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTC
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCc
Confidence            369999999999999999999 999999998853

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=95.24  E-value=0.11  Score=54.65  Aligned_cols=31  Identities=32%  Similarity=0.490  Sum_probs=28.3

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      .++|||+|..|+-+|..|++ |.+|.++|+++
T Consensus       200 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~  231 (491)
T 3urh_A          200 SMIVVGGGVIGLELGSVWARLGAKVTVVEFLD  231 (491)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCEEEEEeccc
Confidence            58999999999999999999 99999999875

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=95.01  E-value=0.078  Score=55.12  Aligned_cols=51  Identities=16%  Similarity=0.120  Sum_probs=37.9

Q ss_pred             CCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEec-CCceEEEEecCCCCceEEEcCCcccc
Q 008331          217 DPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDH-VGARHRACLNNGGKNEIILSAGAIGS  278 (570)
Q Consensus       217 ~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~-~G~~~~v~~~~~aa~~VVLaaGa~~t  278 (570)
                      ...|++|+++++|+++..+++     . ..|.+.+. +|+..++.     ++.||+|+|.--.
T Consensus       327 ~~~~v~i~~~~~v~~v~~~~~-----~-~~v~~~~~~~g~~~~~~-----~D~Vv~AtG~~p~  378 (463)
T 3s5w_A          327 GIPRHAFRCMTTVERATATAQ-----G-IELALRDAGSGELSVET-----YDAVILATGYERQ  378 (463)
T ss_dssp             CCCCSEEETTEEEEEEEEETT-----E-EEEEEEETTTCCEEEEE-----ESEEEECCCEECC
T ss_pred             CCCCeEEEeCCEEEEEEecCC-----E-EEEEEEEcCCCCeEEEE-----CCEEEEeeCCCCC
Confidence            457999999999999987654     3 34666644 57665664     7999999997544

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=94.75  E-value=0.12  Score=55.35  Aligned_cols=31  Identities=29%  Similarity=0.448  Sum_probs=29.4

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      .++|||+|..|+-+|..|++ |.+|.++|+++
T Consensus       153 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~  184 (565)
T 3ntd_A          153 HATVVGGGFIGLEMMESLHHLGIKTTLLELAD  184 (565)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCcEEEEEcCC
Confidence            69999999999999999999 99999999875

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=94.72  E-value=0.16  Score=52.91  Aligned_cols=32  Identities=25%  Similarity=0.413  Sum_probs=29.1

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus       179 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~  211 (474)
T 1zmd_A          179 EKMVVIGAGVIGVELGSVWQRLGADVTAVEFLG  211 (474)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCEEEEEeccC
Confidence            369999999999999999999 99999999875

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=94.43  E-value=0.073  Score=55.84  Aligned_cols=32  Identities=31%  Similarity=0.540  Sum_probs=28.7

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      -.++|||+|..|+-+|..|++ |.+|.++|+++
T Consensus       192 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~  224 (484)
T 3o0h_A          192 KSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGD  224 (484)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCeEEEEECCC
Confidence            368999999999999999999 99999999875

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=94.37  E-value=0.28  Score=51.16  Aligned_cols=32  Identities=25%  Similarity=0.341  Sum_probs=28.8

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      -.++|||+|..|+-+|..|++ |.+|.++|+++
T Consensus       181 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~  213 (476)
T 3lad_A          181 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMD  213 (476)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence            368999999999999999999 99999999875

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=94.35  E-value=0.08  Score=51.98  Aligned_cols=58  Identities=12%  Similarity=0.099  Sum_probs=40.4

Q ss_pred             CCeEEEecceEEEEEecCCCCCCCeEEEEEEEe-cCCceEEEEecCCCCceEEEcCCccccHHHHHHhCC
Q 008331          219 EKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYD-HVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGV  287 (570)
Q Consensus       219 ~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~-~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGi  287 (570)
                      .|++++++++|++|..++      .+.+|.+.+ .+|+..++.     ++.||+|+|..-.+.+|..+|+
T Consensus       202 ~gv~~~~~~~v~~i~~~~------~~~~v~~~~~~~g~~~~~~-----~D~vv~a~G~~p~~~~~~~~~~  260 (332)
T 3lzw_A          202 SKVNVLTPFVPAELIGED------KIEQLVLEEVKGDRKEILE-----IDDLIVNYGFVSSLGPIKNWGL  260 (332)
T ss_dssp             SSCEEETTEEEEEEECSS------SCCEEEEEETTSCCEEEEE-----CSEEEECCCEECCCGGGGGSSC
T ss_pred             CCeEEEeCceeeEEecCC------ceEEEEEEecCCCceEEEE-----CCEEEEeeccCCCchHHhhcCc
Confidence            578899999999987653      345677776 345555553     7999999997655555554443

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=94.07  E-value=0.11  Score=56.07  Aligned_cols=31  Identities=26%  Similarity=0.486  Sum_probs=29.2

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      .++|||+|..|+-+|..|++ |.+|.++|+++
T Consensus       189 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~  220 (588)
T 3ics_A          189 HATVIGGGFIGVEMVENLRERGIEVTLVEMAN  220 (588)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence            69999999999999999999 99999999875

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=93.98  E-value=0.13  Score=54.05  Aligned_cols=31  Identities=19%  Similarity=0.471  Sum_probs=25.9

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      .++|||+|..|+-+|..|++ |.+|.++|+++
T Consensus       184 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~  215 (499)
T 1xdi_A          184 HLIVVGSGVTGAEFVDAYTELGVPVTVVASQD  215 (499)
T ss_dssp             SEEEESCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence            58888888888888888888 88888888775

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=93.91  E-value=0.23  Score=51.90  Aligned_cols=55  Identities=13%  Similarity=0.210  Sum_probs=37.6

Q ss_pred             CCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecC-CceEEEEecCCCCceEEEcCCccccHHHH
Q 008331          218 PEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHV-GARHRACLNNGGKNEIILSAGAIGSPQLL  282 (570)
Q Consensus       218 ~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~-G~~~~v~~~~~aa~~VVLaaGa~~tp~LL  282 (570)
                      +.|++|++++.|++|..++++    + ..|++.+.+ |+..++.     ++.||+|+|---...+|
T Consensus       239 ~~Gv~i~~~~~v~~i~~~~~~----~-~~v~~~~~~~~~~~~~~-----~D~vi~a~G~~p~~~~l  294 (483)
T 3dgh_A          239 ERGIPFLRKTVPLSVEKQDDG----K-LLVKYKNVETGEESEDV-----YDTVLWAIGRKGLVDDL  294 (483)
T ss_dssp             HTTCCEEETEEEEEEEECTTS----C-EEEEEEETTTCCEEEEE-----ESEEEECSCEEECCGGG
T ss_pred             hCCCEEEeCCEEEEEEEcCCC----c-EEEEEecCCCCceeEEE-----cCEEEECcccccCcCcC
Confidence            358889999999999876552    3 347776533 4444553     79999999975444443

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=93.89  E-value=0.25  Score=51.69  Aligned_cols=54  Identities=19%  Similarity=0.222  Sum_probs=36.7

Q ss_pred             CCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecC-CceEEEEecCCCCceEEEcCCccccHHH
Q 008331          218 PEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHV-GARHRACLNNGGKNEIILSAGAIGSPQL  281 (570)
Q Consensus       218 ~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~-G~~~~v~~~~~aa~~VVLaaGa~~tp~L  281 (570)
                      +.|+++++++.|++|...+++    . ..|.+.+.+ |+..++.     ++.||+|+|-.-...+
T Consensus       237 ~~gv~~~~~~~v~~i~~~~~~----~-~~v~~~~~~~g~~~~~~-----~D~vi~a~G~~p~~~~  291 (488)
T 3dgz_A          237 SHGTQFLKGCVPSHIKKLPTN----Q-LQVTWEDHASGKEDTGT-----FDTVLWAIGRVPETRT  291 (488)
T ss_dssp             HTTCEEEETEEEEEEEECTTS----C-EEEEEEETTTTEEEEEE-----ESEEEECSCEEESCGG
T ss_pred             HCCCEEEeCCEEEEEEEcCCC----c-EEEEEEeCCCCeeEEEE-----CCEEEEcccCCcccCc
Confidence            358899999999999875442    2 346666533 5544453     6999999997544444

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=93.73  E-value=0.34  Score=50.14  Aligned_cols=33  Identities=21%  Similarity=0.278  Sum_probs=30.0

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      -.++|||+|..|+-+|..|++ |.+|.++|+++.
T Consensus       148 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  181 (452)
T 3oc4_A          148 QTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLEN  181 (452)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCc
Confidence            369999999999999999999 999999998853

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=93.50  E-value=0.071  Score=55.57  Aligned_cols=32  Identities=22%  Similarity=0.376  Sum_probs=27.7

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      -.++|||+|..|+-+|..|++ |.+|.++|+++
T Consensus       171 ~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~  203 (463)
T 4dna_A          171 ESILIAGGGYIAVEFANIFHGLGVKTTLIYRGK  203 (463)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence            368999999999999999988 99999998775

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=91.96  E-value=0.5  Score=49.46  Aligned_cols=48  Identities=17%  Similarity=0.271  Sum_probs=33.9

Q ss_pred             CCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCcccc
Q 008331          217 DPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGS  278 (570)
Q Consensus       217 ~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~t  278 (570)
                      ++.|++++++++|++|..+++     ....|++  .+|+  ++     .++.||+|+|.--.
T Consensus       242 ~~~GV~i~~~~~v~~i~~~~~-----~~~~v~~--~~G~--~i-----~~D~vv~a~G~~p~  289 (490)
T 1fec_A          242 RANGINVRTHENPAKVTKNAD-----GTRHVVF--ESGA--EA-----DYDVVMLAIGRVPR  289 (490)
T ss_dssp             HHTTEEEEETCCEEEEEECTT-----SCEEEEE--TTSC--EE-----EESEEEECSCEEES
T ss_pred             HhCCCEEEeCCEEEEEEEcCC-----CEEEEEE--CCCc--EE-----EcCEEEEccCCCcC
Confidence            346899999999999987654     2234554  3665  34     36999999996533

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=91.84  E-value=0.57  Score=49.09  Aligned_cols=50  Identities=12%  Similarity=0.279  Sum_probs=34.9

Q ss_pred             CCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHH
Q 008331          217 DPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQ  280 (570)
Q Consensus       217 ~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~  280 (570)
                      ++.|++++++++|++|..+++     ....|++  .+|+  ++     .++.||+|+|..-...
T Consensus       246 ~~~GV~i~~~~~v~~i~~~~~-----~~~~v~~--~~G~--~i-----~~D~vv~a~G~~p~~~  295 (495)
T 2wpf_A          246 TANGIEIMTNENPAKVSLNTD-----GSKHVTF--ESGK--TL-----DVDVVMMAIGRIPRTN  295 (495)
T ss_dssp             HHTTCEEEESCCEEEEEECTT-----SCEEEEE--TTSC--EE-----EESEEEECSCEEECCG
T ss_pred             HhCCCEEEeCCEEEEEEEcCC-----ceEEEEE--CCCc--EE-----EcCEEEECCCCccccc
Confidence            346899999999999987654     2344554  3665  34     3699999999754433

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=91.79  E-value=0.58  Score=53.83  Aligned_cols=31  Identities=26%  Similarity=0.442  Sum_probs=28.4

Q ss_pred             cEEEECCCCchhHHHHhhhc-cC-eEEEEccCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NA-TVLLLEKGG   73 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~-~VlvLE~G~   73 (570)
                      .|+|||+|..|+-+|..|++ |. +|.|+|+.+
T Consensus       334 ~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~  366 (1025)
T 1gte_A          334 AVIVLGAGDTAFDCATSALRCGARRVFLVFRKG  366 (1025)
T ss_dssp             EEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             cEEEECCChHHHHHHHHHHHcCCCEEEEEEecC
Confidence            79999999999999999999 86 899999874

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=91.73  E-value=0.1  Score=54.06  Aligned_cols=35  Identities=14%  Similarity=0.309  Sum_probs=32.0

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      ...+++|||+|.+|+-+|..|++ |.+|.|+|+++.
T Consensus       148 ~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~  183 (447)
T 1nhp_A          148 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDR  183 (447)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCcc
Confidence            35689999999999999999999 999999999864

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=91.20  E-value=0.16  Score=43.14  Aligned_cols=31  Identities=23%  Similarity=0.417  Sum_probs=29.1

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      .++|||.|..|..+|..|.+ |.+|+++|+.+
T Consensus         9 ~viIiG~G~~G~~la~~L~~~g~~v~vid~~~   40 (140)
T 3fwz_A            9 HALLVGYGRVGSLLGEKLLASDIPLVVIETSR   40 (140)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            59999999999999999999 99999999864

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=90.90  E-value=0.14  Score=49.88  Aligned_cols=33  Identities=18%  Similarity=0.388  Sum_probs=30.4

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      .++|||+|..|+-+|..|++ |.+|.|+|+++..
T Consensus       147 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~  180 (312)
T 4gcm_A          147 RLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDEL  180 (312)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSC
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCEEEEEeccccc
Confidence            59999999999999999999 9999999998643

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=90.62  E-value=0.14  Score=51.87  Aligned_cols=33  Identities=24%  Similarity=0.309  Sum_probs=30.7

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      .++|||+|..|+-+|..|++ |.+|.|+|+.+..
T Consensus       148 ~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~  181 (385)
T 3klj_A          148 KAFIIGGGILGIELAQAIIDSGTPASIGIILEYP  181 (385)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCcc
Confidence            69999999999999999999 9999999998754

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=90.59  E-value=0.15  Score=44.23  Aligned_cols=32  Identities=25%  Similarity=0.367  Sum_probs=29.1

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      -.++|||+|..|..+|..|.+ |.+|+++++.+
T Consensus        20 ~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~   52 (155)
T 2g1u_A           20 KYIVIFGCGRLGSLIANLASSSGHSVVVVDKNE   52 (155)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            359999999999999999999 99999999764

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=90.49  E-value=0.14  Score=43.38  Aligned_cols=31  Identities=29%  Similarity=0.598  Sum_probs=28.7

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      -++|+|+|..|..+|..|++ |.+|+++|+.+
T Consensus         8 ~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~   39 (141)
T 3llv_A            8 EYIVIGSEAAGVGLVRELTAAGKKVLAVDKSK   39 (141)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            49999999999999999999 99999999753

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=90.03  E-value=0.17  Score=42.47  Aligned_cols=30  Identities=33%  Similarity=0.509  Sum_probs=28.0

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKG   72 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G   72 (570)
                      .++|||+|..|..+|..|++ |.+|.++++.
T Consensus         6 ~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~   36 (140)
T 1lss_A            6 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDID   36 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            58999999999999999999 9999999975

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=89.70  E-value=0.18  Score=52.32  Aligned_cols=34  Identities=26%  Similarity=0.402  Sum_probs=31.0

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+++..
T Consensus       172 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  206 (458)
T 1lvl_A          172 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERI  206 (458)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCcc
Confidence            369999999999999999999 9999999998643

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=89.20  E-value=0.21  Score=43.15  Aligned_cols=30  Identities=17%  Similarity=0.249  Sum_probs=28.1

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKG   72 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G   72 (570)
                      -++|+|+|..|..+|..|.+ |.+|+++|+.
T Consensus         5 ~vlI~G~G~vG~~la~~L~~~g~~V~vid~~   35 (153)
T 1id1_A            5 HFIVCGHSILAINTILQLNQRGQNVTVISNL   35 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Confidence            48999999999999999999 9999999975

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=88.86  E-value=0.23  Score=51.50  Aligned_cols=33  Identities=27%  Similarity=0.567  Sum_probs=30.6

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  204 (455)
T 1ebd_A          171 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGE  204 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCc
Confidence            479999999999999999999 999999999864

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=88.82  E-value=0.26  Score=47.90  Aligned_cols=33  Identities=24%  Similarity=0.476  Sum_probs=30.2

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+...
T Consensus       153 ~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~  186 (314)
T 4a5l_A          153 KVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDA  186 (314)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             CeEEEECCChHHHHHHHHHHHhCCeeeeeccccc
Confidence            369999999999999999999 999999998753

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=88.72  E-value=0.22  Score=50.09  Aligned_cols=33  Identities=36%  Similarity=0.576  Sum_probs=30.5

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      -.++|||+|..|+-+|..|++ |.+|.++|+++.
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  177 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAM  177 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCe
Confidence            369999999999999999999 999999999864

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=86.61  E-value=0.34  Score=39.16  Aligned_cols=31  Identities=26%  Similarity=0.356  Sum_probs=28.1

Q ss_pred             cEEEECCCCchhHHHHhhhc-c-CeEEEEccCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-N-ATVLLLEKGG   73 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g-~~VlvLE~G~   73 (570)
                      .++|+|+|..|..+|..|.+ | .+|.++++.+
T Consensus         7 ~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~   39 (118)
T 3ic5_A            7 NICVVGAGKIGQMIAALLKTSSNYSVTVADHDL   39 (118)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence            58999999999999999999 8 8999999763

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=86.38  E-value=0.32  Score=40.98  Aligned_cols=31  Identities=19%  Similarity=0.406  Sum_probs=28.2

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      .++|+|+|..|..+|..|.+ |.+|.++++..
T Consensus         8 ~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~   39 (144)
T 2hmt_A            8 QFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   39 (144)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            49999999999999999999 99999998753

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=86.30  E-value=0.41  Score=48.82  Aligned_cols=33  Identities=39%  Similarity=0.493  Sum_probs=30.6

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      -.++|||+|..|+-+|..|++ |.+|.++|+++.
T Consensus       146 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  179 (408)
T 2gqw_A          146 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPR  179 (408)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCc
Confidence            469999999999999999999 999999999864

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=86.19  E-value=0.28  Score=51.20  Aligned_cols=34  Identities=29%  Similarity=0.524  Sum_probs=30.9

Q ss_pred             cccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      .-+++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus       186 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  220 (480)
T 3cgb_A          186 VEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDH  220 (480)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGG
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCc
Confidence            3579999999999999999999 999999998863

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=85.65  E-value=0.41  Score=47.68  Aligned_cols=32  Identities=25%  Similarity=0.522  Sum_probs=28.0

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      .|+|||+|..|+-+|..|++ |.+|.++|+++.
T Consensus       168 ~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~  200 (369)
T 3d1c_A          168 QYVVIGGNESGFDAAYQLAKNGSDIALYTSTTG  200 (369)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECC---
T ss_pred             EEEEECCCcCHHHHHHHHHhcCCeEEEEecCCC
Confidence            69999999999999999999 999999999864

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=85.48  E-value=0.47  Score=49.65  Aligned_cols=34  Identities=24%  Similarity=0.365  Sum_probs=30.8

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+++..
T Consensus       195 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~  229 (490)
T 2bc0_A          195 KRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTC  229 (490)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccch
Confidence            369999999999999999999 9999999998643

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=85.38  E-value=0.48  Score=48.88  Aligned_cols=32  Identities=25%  Similarity=0.383  Sum_probs=29.6

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCe-EEEEccCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NAT-VLLLEKGG   73 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~-VlvLE~G~   73 (570)
                      -.|+|||+|..|+-+|..|++ +.+ |.++++++
T Consensus       213 k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~  246 (447)
T 2gv8_A          213 ESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGG  246 (447)
T ss_dssp             CCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTC
T ss_pred             CEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCC
Confidence            369999999999999999999 988 99999885

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=85.33  E-value=0.6  Score=48.46  Aligned_cols=32  Identities=16%  Similarity=0.155  Sum_probs=29.7

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      .|+|||+|..|+-+|..|++ |.+|.++++.+.
T Consensus       199 ~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~  231 (464)
T 2xve_A          199 TVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTA  231 (464)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             EEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCC
Confidence            69999999999999999999 999999998753

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=84.74  E-value=0.52  Score=49.20  Aligned_cols=33  Identities=21%  Similarity=0.369  Sum_probs=30.5

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~  219 (482)
T 1ojt_A          186 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDG  219 (482)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCc
Confidence            369999999999999999999 999999999864

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=84.33  E-value=0.72  Score=45.04  Aligned_cols=31  Identities=29%  Similarity=0.367  Sum_probs=28.6

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      .+.|||+|.-|+..|..|++ |.+|.++.|..
T Consensus         4 kI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (312)
T 3hn2_A            4 RIAIVGAGALGLYYGALLQRSGEDVHFLLRRD   35 (312)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence            48999999999999999999 99999999864

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=84.21  E-value=0.59  Score=48.49  Aligned_cols=33  Identities=24%  Similarity=0.303  Sum_probs=30.4

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus       172 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  205 (464)
T 2a8x_A          172 KSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPR  205 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence            369999999999999999999 999999999864

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=84.00  E-value=0.63  Score=47.91  Aligned_cols=33  Identities=15%  Similarity=0.269  Sum_probs=30.7

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      .++|||+|..|+-+|..|++ |.+|.|+|+++..
T Consensus       149 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~l  182 (437)
T 4eqs_A          149 KVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKI  182 (437)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCC
T ss_pred             EEEEECCccchhhhHHHHHhcCCcceeeeeeccc
Confidence            69999999999999999999 9999999998753

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=83.99  E-value=0.62  Score=47.84  Aligned_cols=34  Identities=32%  Similarity=0.497  Sum_probs=30.7

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+.+..
T Consensus       150 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~  184 (431)
T 1q1r_A          150 NRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARV  184 (431)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcc
Confidence            369999999999999999999 9999999998643

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=83.82  E-value=0.65  Score=48.70  Aligned_cols=34  Identities=18%  Similarity=0.277  Sum_probs=30.8

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+++..
T Consensus       177 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~  211 (500)
T 1onf_A          177 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRI  211 (500)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSS
T ss_pred             CeEEEECChHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence            369999999999999999999 9999999998643

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=83.65  E-value=0.63  Score=48.00  Aligned_cols=33  Identities=24%  Similarity=0.545  Sum_probs=30.6

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      .++|||+|..|+-+|..|++ |.+|.++|+++..
T Consensus       150 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  183 (449)
T 3kd9_A          150 NVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERV  183 (449)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCcc
Confidence            79999999999999999999 9999999998743

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=83.65  E-value=0.46  Score=43.63  Aligned_cols=30  Identities=30%  Similarity=0.479  Sum_probs=28.1

Q ss_pred             EEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           44 YIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        44 vIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      ++|||+|..|..+|..|.+ |.+|+++|+.+
T Consensus         3 iiIiG~G~~G~~la~~L~~~g~~v~vid~~~   33 (218)
T 3l4b_C            3 VIIIGGETTAYYLARSMLSRKYGVVIINKDR   33 (218)
T ss_dssp             EEEECCHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             EEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            8999999999999999999 99999999764

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=83.61  E-value=0.94  Score=46.78  Aligned_cols=60  Identities=8%  Similarity=-0.051  Sum_probs=42.7

Q ss_pred             CCCccccHHHhhhhcCCCCeEEEecceEEEEEec--CCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCcc
Q 008331          202 EDGHRHSAADLLEYADPEKLTVYLRAVVQRIKFT--ETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAI  276 (570)
Q Consensus       202 ~~g~r~~~~~~l~~~~~~g~~i~~~~~V~~i~~~--~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~  276 (570)
                      ..|...-...+...+.+.|++|+++++|++|..+  ++     ++++|..   +|+.  +     .++.||+|+|..
T Consensus       238 ~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~-----~~~~V~~---~g~~--~-----~ad~VV~a~~~~  299 (453)
T 2bcg_G          238 MYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTG-----KFEGVKT---KLGT--F-----KAPLVIADPTYF  299 (453)
T ss_dssp             TTCTTHHHHHHHHHHHHTTCEEECSCCCCEEEEETTTT-----EEEEEEE---TTEE--E-----ECSCEEECGGGC
T ss_pred             CCCHHHHHHHHHHHHHHcCCEEECCCEEEEEEEECCCC-----eEEEEEE---CCeE--E-----ECCEEEECCCcc
Confidence            3444333334555566679999999999999987  44     8888875   4543  4     378999999985

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=83.46  E-value=0.69  Score=49.08  Aligned_cols=33  Identities=12%  Similarity=0.261  Sum_probs=30.9

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      -.|+|||+|..|+-+|..|++ +.+|.|+++.+.
T Consensus       179 krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  212 (540)
T 3gwf_A          179 RRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQ  212 (540)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCC
T ss_pred             ceEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            369999999999999999999 999999999975

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=83.45  E-value=0.66  Score=47.24  Aligned_cols=34  Identities=38%  Similarity=0.658  Sum_probs=30.8

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      -.++|||+|..|+-+|..|++ |.+|.++|+.+..
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~  178 (410)
T 3ef6_A          144 TRLLIVGGGLIGCEVATTARKLGLSVTILEAGDEL  178 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCcc
Confidence            369999999999999999999 9999999998643

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=83.17  E-value=0.54  Score=48.84  Aligned_cols=33  Identities=15%  Similarity=0.369  Sum_probs=30.4

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus       178 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~  211 (470)
T 1dxl_A          178 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASE  211 (470)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCc
Confidence            369999999999999999999 999999999864

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=82.95  E-value=0.79  Score=44.84  Aligned_cols=57  Identities=11%  Similarity=0.053  Sum_probs=40.9

Q ss_pred             CCCeEEEecceEEEEEecCCCCCCCeEEEEEEEec-CCceEEEEecCCCCceEEEcCCccccHHHH
Q 008331          218 PEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDH-VGARHRACLNNGGKNEIILSAGAIGSPQLL  282 (570)
Q Consensus       218 ~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~-~G~~~~v~~~~~aa~~VVLaaGa~~tp~LL  282 (570)
                      +.|++++++++|++|..++++   .++.+|.+.+. +|+..++.     ++.||+|+|.--.+.+|
T Consensus       207 ~~gv~i~~~~~v~~i~~~~~~---~~v~~v~~~~~~~g~~~~i~-----~D~vi~a~G~~p~~~~~  264 (333)
T 1vdc_A          207 NPKIDVIWNSSVVEAYGDGER---DVLGGLKVKNVVTGDVSDLK-----VSGLFFAIGHEPATKFL  264 (333)
T ss_dssp             CTTEEEECSEEEEEEEESSSS---SSEEEEEEEETTTCCEEEEE-----CSEEEECSCEEESCGGG
T ss_pred             CCCeeEecCCceEEEeCCCCc---cceeeEEEEecCCCceEEEe-----cCEEEEEeCCccchHHh
Confidence            468999999999999876531   25777888753 56555563     79999999976544443

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=82.88  E-value=0.7  Score=45.31  Aligned_cols=31  Identities=19%  Similarity=0.430  Sum_probs=28.7

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      .+.|||+|.-|+..|..|++ |.+|.++.|..
T Consensus         4 kI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (320)
T 3i83_A            4 NILVIGTGAIGSFYGALLAKTGHCVSVVSRSD   35 (320)
T ss_dssp             EEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence            48999999999999999999 99999999864

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=82.84  E-value=0.77  Score=47.41  Aligned_cols=32  Identities=31%  Similarity=0.425  Sum_probs=29.9

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      .++|||+|..|+-+|..|++ |.+|.++|+++.
T Consensus       151 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  183 (452)
T 2cdu_A          151 TITIIGSGYIGAELAEAYSNQNYNVNLIDGHER  183 (452)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             eEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCc
Confidence            69999999999999999999 999999999864

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=82.77  E-value=0.72  Score=49.04  Aligned_cols=34  Identities=12%  Similarity=0.316  Sum_probs=31.2

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      -.|+|||+|..|+-+|..|++ +.+|.|++|.+.+
T Consensus       192 krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~  226 (549)
T 4ap3_A          192 KRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSANY  226 (549)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCC
T ss_pred             CEEEEECCCchHHHHHHHHHhhCCEEEEEECCCCc
Confidence            369999999999999999999 9999999999853

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=82.18  E-value=1.6  Score=40.26  Aligned_cols=48  Identities=15%  Similarity=0.283  Sum_probs=35.9

Q ss_pred             hhcCC-CCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCcc
Q 008331          214 EYADP-EKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAI  276 (570)
Q Consensus       214 ~~~~~-~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~  276 (570)
                      ..+++ .|++++ +++|++|..+++     ++.+|.+.  +|+.  +     .++.||+|+|.+
T Consensus        76 ~~~~~~~gv~i~-~~~v~~i~~~~~-----~v~~v~~~--~g~~--i-----~a~~VV~A~G~~  124 (232)
T 2cul_A           76 YLLEGLRPLHLF-QATATGLLLEGN-----RVVGVRTW--EGPP--A-----RGEKVVLAVGSF  124 (232)
T ss_dssp             HHHHTCTTEEEE-ECCEEEEEEETT-----EEEEEEET--TSCC--E-----ECSEEEECCTTC
T ss_pred             HHHHcCCCcEEE-EeEEEEEEEeCC-----EEEEEEEC--CCCE--E-----ECCEEEECCCCC
Confidence            34445 499999 679999998765     77777753  6642  4     379999999985

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=82.06  E-value=0.87  Score=44.68  Aligned_cols=33  Identities=27%  Similarity=0.452  Sum_probs=30.1

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      -.++|||+|..|+-+|..|++ |.+|.++++++.
T Consensus       156 ~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~  189 (335)
T 2a87_A          156 QDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDE  189 (335)
T ss_dssp             CEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCc
Confidence            469999999999999999999 999999998753

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=81.98  E-value=0.82  Score=47.42  Aligned_cols=33  Identities=15%  Similarity=0.274  Sum_probs=30.3

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      .++|||+|..|+-+|..|++ |.+|.++|+++..
T Consensus       178 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  211 (467)
T 1zk7_A          178 RLAVIGSSVVALELAQAFARLGSKVTVLARNTLF  211 (467)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTT
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCEEEEEEECCcc
Confidence            68999999999999999999 9999999998643

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=81.52  E-value=0.96  Score=44.10  Aligned_cols=53  Identities=11%  Similarity=0.239  Sum_probs=39.3

Q ss_pred             CCeEEEecceEEEEEecCCCCCCCeEEEEEEEe-cCCceEEEEecCCCCceEEEcCCccccHHHH
Q 008331          219 EKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYD-HVGARHRACLNNGGKNEIILSAGAIGSPQLL  282 (570)
Q Consensus       219 ~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~-~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LL  282 (570)
                      .|++++++++|++|..+ +     ++.+|++.+ .+|+..++.     ++.||+|+|.--.+.+|
T Consensus       201 ~gv~i~~~~~v~~i~~~-~-----~v~~v~~~~~~~g~~~~i~-----~D~vi~a~G~~p~~~~l  254 (325)
T 2q7v_A          201 PKMKFIWDTAVEEIQGA-D-----SVSGVKLRNLKTGEVSELA-----TDGVFIFIGHVPNTAFV  254 (325)
T ss_dssp             TTEEEECSEEEEEEEES-S-----SEEEEEEEETTTCCEEEEE-----CSEEEECSCEEESCGGG
T ss_pred             CCceEecCCceEEEccC-C-----cEEEEEEEECCCCcEEEEE-----cCEEEEccCCCCChHHH
Confidence            58999999999999864 3     678898875 357655564     79999999965443443

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=80.90  E-value=1.3  Score=43.58  Aligned_cols=37  Identities=22%  Similarity=0.536  Sum_probs=31.1

Q ss_pred             cccEEEECCCCchhHHHHhhhc-c-CeEEEEccCCCCCC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ-N-ATVLLLEKGGSPYE   77 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~-g-~~VlvLE~G~~~~~   77 (570)
                      ..-|+|||+|..|+.+|..|+. | .++.|++.......
T Consensus        34 ~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~Ve~S   72 (340)
T 3rui_A           34 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYS   72 (340)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBCCTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCEeccc
Confidence            4569999999999999999999 8 57999998765443

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=80.64  E-value=0.83  Score=44.68  Aligned_cols=30  Identities=30%  Similarity=0.400  Sum_probs=27.8

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKG   72 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G   72 (570)
                      -|.|||+|..|...|..+|. |++|+|+|..
T Consensus         8 ~VaViGaG~MG~giA~~~a~~G~~V~l~D~~   38 (319)
T 3ado_A            8 DVLIVGSGLVGRSWAMLFASGGFRVKLYDIE   38 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSC
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCeEEEEECC
Confidence            48999999999999999999 9999999965

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=80.63  E-value=1  Score=41.58  Aligned_cols=29  Identities=24%  Similarity=0.399  Sum_probs=27.1

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEcc
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEK   71 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~   71 (570)
                      -++|||+|..|...|..|.+ |.+|.|+..
T Consensus        33 ~VLVVGgG~va~~ka~~Ll~~GA~VtVvap   62 (223)
T 3dfz_A           33 SVLVVGGGTIATRRIKGFLQEGAAITVVAP   62 (223)
T ss_dssp             CEEEECCSHHHHHHHHHHGGGCCCEEEECS
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEECC
Confidence            59999999999999999999 999999984

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=80.32  E-value=0.95  Score=42.59  Aligned_cols=33  Identities=27%  Similarity=0.414  Sum_probs=29.2

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cC-eEEEEccCCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NA-TVLLLEKGGS   74 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~-~VlvLE~G~~   74 (570)
                      ..|+|||+|..|+.+|..|+. |. ++.|+++...
T Consensus        32 ~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v   66 (249)
T 1jw9_B           32 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTV   66 (249)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC
T ss_pred             CeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCc
Confidence            469999999999999999999 96 8999997653

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=80.25  E-value=1.1  Score=43.70  Aligned_cols=34  Identities=26%  Similarity=0.505  Sum_probs=30.8

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      -.++|||+|..|+-+|..|++ |.+|.++++++..
T Consensus       174 ~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~  208 (338)
T 3itj_A          174 KPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHL  208 (338)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCcc
Confidence            469999999999999999999 9999999988643

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=80.17  E-value=1  Score=45.63  Aligned_cols=34  Identities=24%  Similarity=0.286  Sum_probs=30.8

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      -.++|||+|..|+-+|..|++ |.+|.++|+.+..
T Consensus       143 ~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~  177 (404)
T 3fg2_P          143 KHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRV  177 (404)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcc
Confidence            369999999999999999999 9999999998753

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=80.07  E-value=1.1  Score=43.39  Aligned_cols=32  Identities=28%  Similarity=0.438  Sum_probs=29.6

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      .++|||+|..|+-+|..|++ |.+|.++++++.
T Consensus       157 ~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~  189 (319)
T 3cty_A          157 RVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPK  189 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTBSEEEEECSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCc
Confidence            69999999999999999999 999999998764

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=80.01  E-value=1.1  Score=45.72  Aligned_cols=34  Identities=32%  Similarity=0.440  Sum_probs=30.9

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      -.++|||+|..|+-+|..|++ |.+|.++|+.+..
T Consensus       153 ~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~  187 (415)
T 3lxd_A          153 KNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRV  187 (415)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCch
Confidence            369999999999999999999 9999999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	570
d1ju2a1	351	c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {	5e-59
d1ju2a1	351	c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {	5e-09
d1ju2a2	170	d.16.1.1 (A:294-463) Hydroxynitrile lyase {Almond	2e-36
d1cf3a1	385	c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Asper	8e-34
d1cf3a1	385	c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Asper	3e-05
d1gpea1	391	c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penic	5e-32
d1gpea1	391	c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penic	3e-05
d1kdga1	360	c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain	4e-25
d1kdga1	360	c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain	1e-05
d3coxa1	370	c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of	1e-19
d2f5va1	379	c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {W	1e-18
d2f5va1	379	c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {W	3e-06
d1n4wa1	367	c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of	4e-18
d1kdga2	181	d.16.1.1 (A:513-693) Flavoprotein domain of flavoc	8e-08
d1cf3a2	196	d.16.1.1 (A:325-520) Glucose oxidase {Aspergillus	1e-06
d1gpea2	196	d.16.1.1 (A:329-524) Glucose oxidase {Penicillium	1e-06
d2gqfa1	253	c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H	2e-05
d2i0za1	251	c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B	1e-04
d2gmha1	380	c.3.1.2 (A:4-236,A:336-482) Electron transfer flav	1e-04
d1chua2	305	c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {E	1e-04
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	2e-04
d1qo8a2	317	c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (	3e-04
d1y0pa2	308	c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (	3e-04
d2bs2a2	336	c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wo	5e-04
d2gf3a1	281	c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bac	6e-04
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	7e-04
d1i8ta1	298	c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu	0.001
d1d4ca2	322	c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (	0.002
d1ryia1	276	c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {	0.003
d1neka2	330	c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase	0.003
d1kf6a2	311	c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Es	0.003
d1pn0a1	360	c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {So	0.004

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} Length = 351

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

 Score =  198 bits (503), Expect = 5e-59
 Identities = 131/298 (43%), Positives = 176/298 (59%), Gaps = 7/298 (2%)

Query: 26  YYTFVKDATSAPLISYYDYIIVGGGTSGCPLAATLSQNATVLLLEKGGSPYENPNITDTG 85
           Y +F  DAT   L   YDY+IVGGGTSGCPLAATLS+   VL+LE+G  P   PN+    
Sbjct: 11  YLSFAYDATDLELEGSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSLPTAYPNVLTAD 70

Query: 86  NFATTL-LDPSPTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRASLRYVREVG--WT 142
            F   L  +    +P ++F+SEDG+ N R RVLGG S+INAG Y RA+       G  W 
Sbjct: 71  GFVYNLQQEDDGKTPVERFVSEDGIDNVRGRVLGGTSIINAGVYARANTSIYSASGVDWD 130

Query: 143 ESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLLEAGVLPYNGFTFDHIYGTKVSGTIFDE 202
             LVN +YEWVE  + ++P    WQS  +   LEAGV P +GF+ DH  GT+++G+ FD 
Sbjct: 131 MDLVNQTYEWVEDTIVYKPNSQSWQSVTKTAFLEAGVHPNHGFSLDHEEGTRITGSTFDN 190

Query: 203 DGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLN 262
            G RH+A +LL   +   L V + A V++I F+       TA  V + D  G  H+A + 
Sbjct: 191 KGTRHAADELLNKGNSNNLRVGVHASVEKIIFSN--APGLTATGVIYRDSNGTPHQAFVR 248

Query: 263 NGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMNALF 320
           + G  E+I+SAG IG+PQLL+LSGVGP + L    I VV+  P VGQ +    ++  F
Sbjct: 249 SKG--EVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQCLVGKVLDGDF 304

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} Length = 351

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

 Score = 55.7 bits (133), Expect = 5e-09
 Identities = 26/51 (50%), Positives = 41/51 (80%)

Query: 515 DRVVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLGRYMGLRILQDR 565
            +V+D D++V G++ LRV+DGSTF  +P ++PQ   +MLGRY+G++ILQ+R
Sbjct: 297 GKVLDGDFRVTGINALRVVDGSTFPYTPASHPQGFYLMLGRYVGIKILQER 347

>d1ju2a2 d.16.1.1 (A:294-463) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} Length = 170

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GMC oxidoreductases
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

 Score =  131 bits (331), Expect = 2e-36
 Identities = 51/202 (25%), Positives = 83/202 (41%), Gaps = 34/202 (16%)

Query: 311 MSDNPMNALFVPSARPVEVSLVQVVGITRFDSYIETASGLSLAPSWAQGLTRDYSSFLNK 370
           + DNP N + +    P+E ++V V+GI+  D Y  + S L                  N 
Sbjct: 2   LHDNPRNFINILPPNPIEPTIVTVLGISN-DFYQCSFSSLPFTTPPFGFFPSSSYPLPNS 60

Query: 371 TDIPSLVTPETVAEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHLRLR-TLDADDNPSVT 429
           T                                 K+ GP S G L L+ + +   +P+V 
Sbjct: 61  T---------------------------FAHFASKVAGPLSYGSLTLKSSSNVRVSPNVK 93

Query: 430 FNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLMVNIPTNLRPRHVVG 489
           FNY+    DL  CV GM+ I ++L++ AL  ++  D+   E  +++      +       
Sbjct: 94  FNYYSNLTDLSHCVSGMKKIGELLSTDALKPYKVEDLPGVEGFNIL-----GIPLPKDQT 148

Query: 490 ASISLEQFCRDTVMTIWHYHGG 511
              + E FCR++V + WHYHGG
Sbjct: 149 DDAAFETFCRESVASYWHYHGG 170

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Length = 385

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

 Score =  130 bits (327), Expect = 8e-34
 Identities = 74/329 (22%), Positives = 110/329 (33%), Gaps = 49/329 (14%)

Query: 42  YDYIIVGGGTSGCPLAATLSQNA--TVLLLEKGGSPYENPNITDTGNFATTLLDPSPT-- 97
            DYII GGG +G   AA L++N   +VL++E G    +   I +  N    +   S    
Sbjct: 18  VDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDHA 77

Query: 98  -SPSQQFISEDGVYNARARVLGGGSVINAGFYTRASLRYVREVGWTESLVNSSY------ 150
               +   +           LGG +++N G +TR     V            ++      
Sbjct: 78  YETVELATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAY 137

Query: 151 -------------------------EWVEKKVAHEPPMLQWQ-----SAVRDGLLEAGVL 180
                                      V   V   P            A+   + + GV 
Sbjct: 138 SLQAERARAPNAKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPIVKALMSAVEDRGVP 197

Query: 181 PYNGFTFDHIYGTKVSGTIFDEDGHRHSAADLLEY--ADPEKLTVYLRAVVQRIKFTETG 238
               F     +G  +      ED  R  AA            L V     V ++  ++ G
Sbjct: 198 TKKDFGCGDPHGVSMFPNTLHEDQVRSDAAREWLLPNYQRPNLQVLTGQYVGKVLLSQNG 257

Query: 239 RAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGI 298
              P A  V F  H G  H        K+E++L+AG+  SP +L  SG+G  + L   GI
Sbjct: 258 -TTPRAVGVEFGTHKGNTHNVY----AKHEVLLAAGSAVSPTILEYSGIGMKSILEPLGI 312

Query: 299 RVVVDQPNVGQGMSDNPMNALFVPSARPV 327
             VVD P     M    M  + V +A  V
Sbjct: 313 DTVVDLPVGLCSMMPKEMGGV-VDNAARV 340

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Length = 385

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

 Score = 44.1 bits (103), Expect = 3e-05
 Identities = 17/49 (34%), Positives = 23/49 (46%)

Query: 517 VVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLGRYMGLRILQDR 565
           VVD   +V GV GLRVIDGS       ++       +   +   IL+D 
Sbjct: 333 VVDNAARVYGVQGLRVIDGSIPPTQMSSHVMTVFYAMALKISDAILEDY 381

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Length = 391

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

 Score =  125 bits (314), Expect = 5e-32
 Identities = 66/319 (20%), Positives = 113/319 (35%), Gaps = 52/319 (16%)

Query: 42  YDYIIVGGGTSGCPLAATLSQNA--TVLLLEKGGSPYENPNITDTGNFATTLLDPSPTSP 99
           YDYII GGG +G  +AA L++N    VL++EKG     +  I +  N    +     T+ 
Sbjct: 25  YDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFG---TTV 81

Query: 100 SQQFISEDGVYN-----ARARVLGGGSVINAGFYTRASLRYVREV-------GWTESLVN 147
            Q +++   + N        + LGG ++IN   +TR     +          GW    + 
Sbjct: 82  DQNYLTVPLINNRTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMF 141

Query: 148 SSYEWVEKKVAHEPPMLQWQS-----------------------------AVRDGLLEAG 178
              +  E         L                                 A+ + +   G
Sbjct: 142 EYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTVQSGARDNGQPWSPIMKALMNTVSALG 201

Query: 179 VLPYNGFTFDHIYGTKVSGTIFDEDGHRHSAADLLEYADPEKLTVYLRAVVQRIKF-TET 237
           V     F   H  G  +     DE+  R  AA      + ++  + +       K   + 
Sbjct: 202 VPVQQDFLCGHPRGVSMIMNNLDENQVRVDAARAWLLPNYQRSNLEILTGQMVGKVLFKQ 261

Query: 238 GRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRG 297
             + P A  V F  +             K+E++L+AG+  SP +L  SG+G  + L +  
Sbjct: 262 TASGPQAVGVNFGTNKAVNFDVF----AKHEVLLAAGSAISPLILEYSGIGLKSVLDQAN 317

Query: 298 IRVVVDQPN-VGQGMSDNP 315
           +  ++D P  +   MS   
Sbjct: 318 VTQLLDLPVGICSMMSREL 336

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Length = 391

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

 Score = 44.1 bits (103), Expect = 3e-05
 Identities = 17/51 (33%), Positives = 22/51 (43%)

Query: 514 VDRVVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLGRYMGLRILQD 564
           +  VVD   KV G  GLRVIDGS       ++       +   +   IL D
Sbjct: 336 LGGVVDATAKVYGTQGLRVIDGSIPPTQVSSHVMTIFYGMALKVADAILDD 386

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

 Score =  104 bits (260), Expect = 4e-25
 Identities = 57/297 (19%), Positives = 91/297 (30%), Gaps = 30/297 (10%)

Query: 42  YDYIIVGGGTSGCPLAATLSQN-ATVLLLEKGGSPYENPNITDTGNFATTL--------- 91
           YDYIIVG G  G   A  LS+    VLLLE+GG   +    T    +AT+          
Sbjct: 3   YDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPG 62

Query: 92  LDPSPTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRASL-----------RYVREVG 140
           L  S  + S  F     +      ++GGG+ +N   Y   +             +     
Sbjct: 63  LFESLFTDSNPFWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFSSSVGWPSSWTNHAP 122

Query: 141 WTESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLLEAGVLPYNGFTFDHIYGTKVSGTIF 200
           +T  L +            +  + Q  + V   L   G          +        + F
Sbjct: 123 YTSKLSSRLPSTDHPSTDGQRYLEQSFNVVSQLLKGQGYNQATINDNPNYKDHVFGYSAF 182

Query: 201 DEDGHRHSAADLLEYADPEK---LTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARH 257
           D    + +                T     +V  +    +         V   D     +
Sbjct: 183 DFLNGKRAGPVATYLQTALARPNFTFKTNVMVSNVVRNGS-----QILGVQTNDPTLGPN 237

Query: 258 RACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDN 314
                      +ILSAGA G+ ++L  SG+GP + ++              Q    N
Sbjct: 238 GFIPVTPKG-RVILSAGAFGTSRILFQSGIGPTDMIQTVQSNPTAAAALPPQNQWIN 293

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

 Score = 45.0 bits (105), Expect = 1e-05
 Identities = 16/51 (31%), Positives = 22/51 (43%)

Query: 515 DRVVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLGRYMGLRILQDR 565
             VVD + KV G + L ++D     + P  NPQ T M        +IL   
Sbjct: 307 SAVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLMSAAEQAAAKILALA 357

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

 Score = 88.4 bits (218), Expect = 1e-19
 Identities = 39/296 (13%), Positives = 77/296 (26%), Gaps = 58/296 (19%)

Query: 42  YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYENPNITDTGNFATTLLDPS----- 95
              +++G G  G   A  L+Q      ++E G S ++ P             D       
Sbjct: 8   VPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRS-WDTPGSDGKIFCGMLNPDKRSMWLA 66

Query: 96  --------------------PTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRAS--- 132
                                           G+   + R +GGGS++N G         
Sbjct: 67  DKTDQPVSNFMGFGINKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRNY 126

Query: 133 LRYVREVGWTESLVNSSYEWVEK---------KVAHEPPMLQWQSAVRDGLLEAGV---- 179
              +     +  + N  +                       ++    R     +G     
Sbjct: 127 FEEILPSVDSNEMYNKYFPRANTGLGVNNIDQAWFESTEWYKFARTGRKTAQRSGFTTAF 186

Query: 180 ----LPYNGFTFDHIYGTKVSGTIFDEDGH----RHSAAD--LLEYADPEKLTVYLRAVV 229
                 +     +       SG   +        + S     L + A   KLT+     V
Sbjct: 187 VPNVYDFEYMKKEAAGQVTKSGLGGEVIYGNNAGKKSLDKTYLAQAAATGKLTITTLHRV 246

Query: 230 QRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLS 285
            ++          T   +    +V A           + +  +AG++G+ +LL+  
Sbjct: 247 TKVAPATGSGYSVTMEQIDEQGNVVATKVVT-----ADRVFFAAGSVGTSKLLVSM 297

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Length = 379

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

 Score = 85.8 bits (211), Expect = 1e-18
 Identities = 43/324 (13%), Positives = 75/324 (23%), Gaps = 57/324 (17%)

Query: 42  YDYIIVGGGTSGCPLAATLSQN-ATVLLLEKGGSPYENPNITDTGNFATTLLDPSP---T 97
           YD +IVG G  GC  A  L      V + + G             N      +       
Sbjct: 5   YDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFVNV 64

Query: 98  SPSQQFISEDGVYNARARVLGGGSVINAGFYTRAS-------LRYVREVGWTESLVNSS- 149
              Q       V       L   S   + F+ R         LR +     T  +   S 
Sbjct: 65  IQGQLMSVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRVVGGMST 124

Query: 150 --------------------------YEWVEKKVAHEPPMLQWQSAVRDGLLEAGVL--- 180
                                      EW       E          ++ +    VL   
Sbjct: 125 HWTCATPRFDREQRPLLVKDDADADDAEWDRLYTKAESYFQTGTDQFKESIRHNLVLNKL 184

Query: 181 --------PYNGFTFDHIYGTKVSGTIFDEDGHRHSAADLLEYADPEKLTVYLRAVVQRI 232
                    +          +         +            A  E+  ++     +R+
Sbjct: 185 AEEYKGQRDFQQIPLAATRRSPTFVEWSSANTVFDLQNRPNTDAPEERFNLFPAVACERV 244

Query: 233 KFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANE 292
                         +  +D +             +  +L+AGA+ + QLL+ SG G    
Sbjct: 245 VRNALNS---EIESLHIHDLISGDRFEI----KADVYVLTAGAVHNTQLLVNSGFGQLGR 297

Query: 293 LRKRGIRVVVDQPNVGQGMSDNPM 316
                   ++      + M  +  
Sbjct: 298 PNPTNPPELLPSLGSHR-MGFDEK 320

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Length = 379

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

 Score = 47.7 bits (112), Expect = 3e-06
 Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 2/67 (2%)

Query: 506 WHYHGGCQVDR--VVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLGRYMGLRILQ 563
            H  G  + +    V+ D +V G   L +        + G NP  T M L       I Q
Sbjct: 312 SHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKSCEYIKQ 371

Query: 564 DRDRISF 570
           +     F
Sbjct: 372 NFTPSPF 378

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} Length = 367

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

 Score = 83.9 bits (206), Expect = 4e-18
 Identities = 41/298 (13%), Positives = 81/298 (27%), Gaps = 57/298 (19%)

Query: 41  YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS------------------------- 74
           Y   +++G G      A  L +     L+LE G                           
Sbjct: 2   YVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWFK 61

Query: 75  PYENPNITDTGNFATTLLDPSPTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRASLR 134
                 +           +  P +     ++ D +     R +GGGS++N G        
Sbjct: 62  NRTEAPLGSFLWLDVVNRNIDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKRS 121

Query: 135 YVR---EVGWTESLVNSSYEWVEKKV--------------AHEPPMLQWQSAVRDGLLEA 177
           Y         +  + +  +      +               ++   +  + A + GL   
Sbjct: 122 YFEEILPRVDSSEMYDRYFPRANSMLRVNHIDTKWFEDTEWYKFARVSREQAGKAGLGTV 181

Query: 178 GVLPYNGFTFDHIYGTKVSGT-------IFDEDGHRHSAADLLEY--ADPEKLTVYLRAV 228
            V     F +                  I+  +  + S             K+T+     
Sbjct: 182 FVPNVYDFGYMQREAAGEVPKSALATEVIYGNNHGKQSLDKTYLAAALGTGKVTIQTLHQ 241

Query: 229 VQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSG 286
           V+ I+ T+ G    T         + A             + L AG++GS +LL+ + 
Sbjct: 242 VKTIRQTKDGGYALTVEQKDTDGKLLATKEIS-----CRYLFLGAGSLGSTELLVRAR 294

>d1kdga2 d.16.1.1 (A:513-693) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), substrate-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 181

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GMC oxidoreductases
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), substrate-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

 Score = 50.2 bits (119), Expect = 8e-08
 Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 4/77 (5%)

Query: 401 VIVEKIMGPRSTGHLRLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSK 460
           + V    G +S G + +    A     +T  +   P D    +Q +  ++  + S     
Sbjct: 94  ITVYLSTGIQSRGRIGID--AALRGTVLTPPWLVNPVDKTVLLQALHDVVSNIGSIPGLT 151

Query: 461 FRYPD--VSVQELIDLM 475
              PD   +++E +D  
Sbjct: 152 MITPDVTQTLEEYVDAY 168

>d1cf3a2 d.16.1.1 (A:325-520) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Length = 196

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GMC oxidoreductases
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

 Score = 47.4 bits (112), Expect = 1e-06
 Identities = 14/104 (13%), Positives = 32/104 (30%), Gaps = 22/104 (21%)

Query: 409 PRSTGHLRLRTLDA-DDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFR----Y 463
           P + G++ +   D    + +    YF    DL+      +   ++ NS A+  +      
Sbjct: 106 PFTRGYVHILDKDPYLHHFAYDPQYFLNELDLLGQAAATQLARNISNSGAMQTYFAGETI 165

Query: 464 PDVSVQELIDLMVNIPTNLRPRHVVGASISLEQFCRDTVMTIWH 507
           P  ++    DL                  +  ++        +H
Sbjct: 166 PGDNLAYDADLS-----------------AWTEYIPYHFRPNYH 192

>d1gpea2 d.16.1.1 (A:329-524) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Length = 196

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GMC oxidoreductases
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

 Score = 46.7 bits (110), Expect = 1e-06
 Identities = 12/104 (11%), Positives = 28/104 (26%), Gaps = 22/104 (21%)

Query: 409 PRSTGHLRLRTLDADDNPSVTF-NYFQEPEDLVRCVQGMRTIIDVLNSRALSKFR----Y 463
           P + G + + + D           +F    DL+      +   D+ +  A+ ++      
Sbjct: 106 PFTRGSVHILSSDPYLWQFANDPKFFLNEFDLLGQAAASKLARDLTSQGAMKEYFAGETL 165

Query: 464 PDVSVQELIDLMVNIPTNLRPRHVVGASISLEQFCRDTVMTIWH 507
           P  ++ +   L                      +        WH
Sbjct: 166 PGYNLVQNATLS-----------------QWSDYVLQNFRPNWH 192

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

 Score = 43.7 bits (102), Expect = 2e-05
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYENPNITDTGNFATTLLDPSP 96
          Y + II+G G +G   AA L++   +V + + G        ++  G    T L+ +P
Sbjct: 4  YSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTP 60

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYENPNITDTGNFATTLLDPSP 96
          YD I++GGG SG   A   ++  A VLLL+KG        I+  G    T   P  
Sbjct: 3  YDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLD 58

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} Length = 380

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 42.2 bits (98), Expect = 1e-04
 Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 7/41 (17%)

Query: 42 YDYIIVGGGTSGCPLAATLSQNAT-------VLLLEKGGSP 75
           D +IVG G +G   A  L Q A        V L+EK    
Sbjct: 33 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHI 73

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

 Score = 41.8 bits (97), Expect = 1e-04
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 42 YDYIIVGGGTSGCPLAATLSQNATVLLLEKG 72
           D +I+G G +G  LA  L+    V++L KG
Sbjct: 8  CDVLIIGSGAAGLSLALRLADQHQVIVLSKG 38

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.4 bits (95), Expect = 2e-04
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 42 YDYIIVGGGTSGCPLAATLSQN-ATVLLLEKGGSP 75
          YD I++G G + C L+  +S N   VL +++    
Sbjct: 7  YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYY 41

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 40.7 bits (94), Expect = 3e-04
 Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 30 VKDATSAPLISYYDYIIVGGGTSGCPLAATLSQN-ATVLLLEKGGSPYENPNITDTGNFA 88
          ++ A +A        ++VG G++G   +    +  A V+L++K      N  I+  G  A
Sbjct: 8  IQKAIAAGPSETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNA 67

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 40.8 bits (94), Expect = 3e-04
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 42 YDYIIVGGGTSGCPLAATLSQN-ATVLLLEKGGSPYENPNITDTGNF 87
           D ++VG G +G   A + + + A V+L+EK      N  +   G  
Sbjct: 17 VDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMN 63

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

 Score = 40.1 bits (92), Expect = 5e-04
 Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 39 ISYYDYIIVGGGTSGCPLAATLSQN-ATVLLLEKG 72
          + Y D +++GGG +G   A    Q   + ++L   
Sbjct: 3  VQYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLI 37

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 281

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

 Score = 39.7 bits (91), Expect = 6e-04
 Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 40 SYYDYIIVGGGTSGCPLAATLSQN-ATVLLLEKGGSPYE 77
          +++D I+VG G+ G      L++     LL++    P+ 
Sbjct: 2  THFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHT 40

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.4 bits (90), Expect = 7e-04
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 42 YDYIIVGGGTSGCPLAATLSQN-ATVLLLEKGGSP 75
          YD I++G G + C L+  LS +   VL ++K    
Sbjct: 6  YDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHY 40

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 39.0 bits (90), Expect = 0.001
 Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEK 71
          YDYIIVG G  G   A  L + N  VL++EK
Sbjct: 2  YDYIIVGSGLFGAVCANELKKLNKKVLVIEK 32

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

 Score = 38.4 bits (88), Expect = 0.002
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 32 DATSAPLISYYDYIIVGGGTSGCPLAATLSQN-ATVLLLEKGGSP 75
           A +A +    D +I+G G +G   A +     A V+LLEK   P
Sbjct: 14 KAIAAGVKETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIP 58

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKG 72
          Y+ +++GGG  G  +A  L++ N    L E G
Sbjct: 5  YEAVVIGGGIIGSAIAYYLAKENKNTALFESG 36

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} Length = 330

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

 Score = 37.9 bits (87), Expect = 0.003
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 42 YDYIIVGGGTSGCPLAATLSQN-ATVLLLEKG 72
          +D +++G G +G   A  +SQ+  T  LL K 
Sbjct: 8  FDAVVIGAGGAGMRAALQISQSGQTCALLSKV 39

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 3/35 (8%)

Query: 41 YYDYIIVGGGTSGCPLAATLSQ---NATVLLLEKG 72
            D  IVG G +G   A   +Q   NA + L+ K 
Sbjct: 5  QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKV 39

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

 Score = 37.4 bits (85), Expect = 0.004
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 6/46 (13%)

Query: 40 SYYDYIIVGGGTSGCPLAATLSQNAT------VLLLEKGGSPYENP 79
          SY D +IVG G +G   A  LS+         V +++K  +   N 
Sbjct: 6  SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNG 51

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	570
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	100.0
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	100.0
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	100.0
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	100.0
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	100.0
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	100.0
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	100.0
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.75
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.72
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	99.72
d1ju2a2	170	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	99.6
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	99.56
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	99.5
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	99.49
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.47
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.46
d1gpea2	196	Glucose oxidase {Penicillium amagasakiense [TaxId:	99.45
d1cf3a2	196	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	99.43
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.43
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.42
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.36
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	99.34
d1kdga2	181	Flavoprotein domain of flavocytochrome cellobiose	99.33
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	99.31
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.18
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	99.14
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	98.94
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.9
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	98.78
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	98.62
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	98.4
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.37
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.37
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.35
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.28
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	98.27
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.26
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	98.23
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.23
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	98.15
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.15
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.12
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.11
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.08
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	98.04
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.03
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	98.02
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.01
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	97.95
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	97.94
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	97.94
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	97.92
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	97.87
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	97.85
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	97.8
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	97.78
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	97.78
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	97.76
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	97.76
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	97.71
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	97.71
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	97.71
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.7
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	97.69
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	97.66
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	97.64
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	97.6
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	97.6
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	97.54
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	97.48
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	97.47
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	97.32
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	97.26
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	97.23
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	97.14
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	97.09
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	96.83
d2f5va2	198	Pyranose 2-oxidase {White-rot fungus (Peniophora s	96.68
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	96.61
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	96.58
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	96.44
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.34
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	96.34
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	96.29
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.22
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	95.93
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	95.89
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	95.79
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	95.61
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	95.42
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	95.38
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	95.25
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	94.86
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	94.62
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	94.41
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	94.06
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	93.28
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	93.22
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	92.68
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	92.22
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	91.85
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	91.66
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	89.15
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	88.96
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	88.88
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	88.61
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	88.19
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	87.77
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	86.6
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	86.29
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	86.02
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	85.38
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	84.79
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	84.43
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	83.72
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	83.16
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	82.68
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	82.45
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	81.23
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	80.22

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=100.00  E-value=8.3e-50  Score=412.49  Aligned_cols=277  Identities=25%  Similarity=0.360  Sum_probs=203.8

Q ss_pred             eecccCCCCCCcccEEEECCCCchhHHHHhhhc-c-CeEEEEccCCCCCCCCC-ccccccccccc---CCCCCCCCCccc
Q 008331           30 VKDATSAPLISYYDYIIVGGGTSGCPLAATLSQ-N-ATVLLLEKGGSPYENPN-ITDTGNFATTL---LDPSPTSPSQQF  103 (570)
Q Consensus        30 ~~~~~~~~~~~~~DvIIVGsG~aG~~~A~~La~-g-~~VlvLE~G~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~  103 (570)
                      +.|+.++. .++|||||||||++|+++|.||+| + .||||||+|+....... ...+..+...+   .+|.|.+.+  .
T Consensus        14 ~~~p~~~~-~~tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~~~~~~~~~~~p~~~~~~~~~~~dw~~~t~p--~   90 (391)
T d1gpea1          14 LSDPSKVA-GKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTTVDQNYLTVP--L   90 (391)
T ss_dssp             BCCGGGTT-TCEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCCTTSCHHHHCGGGTTTTTTSTTBCCEECCC--C
T ss_pred             cCCccccc-CCeeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCCCCCCCceeeCHHHHHHhhCCCcccCceeee--c
Confidence            34444443 357999999999999999999999 6 79999999986443222 22333333322   245555544  3


Q ss_pred             ccCCcccccCCceeccccccCceeeeCCChhhhhh-------CCCChhhhhhhhHHHHhhccCC----------------
Q 008331          104 ISEDGVYNARARVLGGGSVINAGFYTRASLRYVRE-------VGWTESLVNSSYEWVEKKVAHE----------------  160 (570)
Q Consensus       104 ~~~~~~~~~~g~~lGG~s~~~~~~~~r~~~~~~~~-------~gw~~~~l~~~~~~~~~~~~~~----------------  160 (570)
                      ..++.+.+.+|+++||+|.+|++++.|+.+.+++.       .+|.|+++.+||+++|......                
T Consensus        91 ~~~r~~~~~~G~~lGGsS~in~~~~~rg~~~d~~~w~~~~G~~gW~~~~l~pyf~k~E~~~~~~~~~~~~~~~~~~~~~g  170 (391)
T d1gpea1          91 INNRTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHG  170 (391)
T ss_dssp             TTSCCCEECCBCSTTGGGGTSCCEECCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHTEEECCCCHHHHHHTCCCCGGGCC
T ss_pred             CCCcEeeeceeeccCcccceeeeEEeeccccccccccccCCCCccccchhHHHHHHhhhccCCcchhcccccCccccccC
Confidence            56778889999999999999999999999864432       5799999999999988643210                


Q ss_pred             -------------CCCcchHHHHHHHHHHcCCCCCCCCCcCCCCcceeeeeEECCCCccccHHH--hhhhcCCCCeEEEe
Q 008331          161 -------------PPMLQWQSAVRDGLLEAGVLPYNGFTFDHIYGTKVSGTIFDEDGHRHSAAD--LLEYADPEKLTVYL  225 (570)
Q Consensus       161 -------------~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~--~l~~~~~~g~~i~~  225 (570)
                                   ....++.+.+.++...+|++....+......++..........+.|.+...  +.+.+.+.|++|++
T Consensus       171 ~~~~~~~~~~~~~~~~~p~~~~~~~a~~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~r~s~a~~~~~p~~~r~nl~i~t  250 (391)
T d1gpea1         171 TNGTVQSGARDNGQPWSPIMKALMNTVSALGVPVQQDFLCGHPRGVSMIMNNLDENQVRVDAARAWLLPNYQRSNLEILT  250 (391)
T ss_dssp             BSSSEEEBCCCCSSCBCTHHHHHHHHHHHTTCCBSCCTTSSCCCEEECCEESBCTTCCBCCHHHHHTTTTTTCTTEEEEE
T ss_pred             CCCcccccccccccccCHHHHHHHHHHHhcCCceeeccccCcccccccccceeeccccccchhhhccCccccchhhhhhc
Confidence                         012345678889999999864332211111111111111123445555543  44577889999999


Q ss_pred             cceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHHhCCCChhhhhhcCCcccccCC
Q 008331          226 RAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQP  305 (570)
Q Consensus       226 ~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGiG~~~~l~~~gi~~~~~~p  305 (570)
                      ++.|+||++++.. ++.|++||++.+.+|..++++    ++|+||||||+|+||+|||+|||||+++|+++||+++.|+|
T Consensus       251 ~a~V~rIl~~~~~-~g~ra~GV~~~~~~g~~~~v~----A~keVILaAGai~SP~LLl~SGIGp~~~L~~~gI~~v~dlP  325 (391)
T d1gpea1         251 GQMVGKVLFKQTA-SGPQAVGVNFGTNKAVNFDVF----AKHEVLLAAGSAISPLILEYSGIGLKSVLDQANVTQLLDLP  325 (391)
T ss_dssp             SCEEEEEEEEEET-TEEEEEEEEEEEETTEEEEEE----EEEEEEECSCTTTHHHHHHHTTEECHHHHHHTTCCCSEECC
T ss_pred             cceeeEEeeeCCC-CCceEEeeEEecCCCeEEEEE----eCCEEEEecchhcchHHHHhcCCCcHHHHHHCCCCEEEECC
Confidence            9999999987543 345899999987778777777    67889999999999999999999999999999999999999


Q ss_pred             -ccCcccccC
Q 008331          306 -NVGQGMSDN  314 (570)
Q Consensus       306 -~VG~~l~dh  314 (570)
                       .||+|||||
T Consensus       326 ~Gvg~nl~dh  335 (391)
T d1gpea1         326 VGICSMMSRE  335 (391)
T ss_dssp             TTCTCBSCGG
T ss_pred             cccccccccC
Confidence             699999887

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=100.00  E-value=6.3e-49  Score=405.58  Aligned_cols=261  Identities=28%  Similarity=0.383  Sum_probs=192.3

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-c-CeEEEEccCCCCCCC-CCcccccccccccC---CCCCCCCCcccccCCccccc
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-N-ATVLLLEKGGSPYEN-PNITDTGNFATTLL---DPSPTSPSQQFISEDGVYNA  112 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g-~~VlvLE~G~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  112 (570)
                      .++|||||||||++|+++|.||+| + .||||||+|+..... +...++..+...+.   +|.|.+.. ....++.+.+.
T Consensus        15 ~~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~~~~~~~~~~~~~~~~~~~~~~~~dw~~~t~~-~~~~~r~~~~~   93 (385)
T d1cf3a1          15 GRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDHAYETVE-LATNNQTALIR   93 (385)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSCCCTTSCHHHHBGGGTTTTTTSTTBCCEECCC-CTTTSCCCEEC
T ss_pred             CCeEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCCCCCCCCccccCHhHHhhhcCCCCCcCccccC-cCCCCceeeec
Confidence            467999999999999999999999 5 899999999865432 22233333332222   34444433 34567788899


Q ss_pred             CCceeccccccCceeeeCCChhhhhh-------CCCChhhhhhhhHHHHhhccCC-------------------------
Q 008331          113 RARVLGGGSVINAGFYTRASLRYVRE-------VGWTESLVNSSYEWVEKKVAHE-------------------------  160 (570)
Q Consensus       113 ~g~~lGG~s~~~~~~~~r~~~~~~~~-------~gw~~~~l~~~~~~~~~~~~~~-------------------------  160 (570)
                      +|+++||+|.+|+++|.|+.+.+++.       .+|.|+++.|||++.|+.....                         
T Consensus        94 ~G~~lGGsS~in~~~~~R~~~~d~d~w~~~~~~~gw~~~~l~Pyf~k~E~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  173 (385)
T d1cf3a1          94 SGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVHAGP  173 (385)
T ss_dssp             CBCSTTGGGGTSCCBCCCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHHEEECCCCHHHHHHTCCCCGGGSCSSSSEEEBC
T ss_pred             ccccccccceeeeeeeeccChhhhcccccccCCCcCchhhhHHHHHHHHhhcCCCcccccccccccccccCCcccccccc
Confidence            99999999999999999999965432       5799999999999998643211                         


Q ss_pred             ----CCCcchHHHHHHHHHHcCCCCCCCCCcCCCCcceeeeeEECCCCccccH-HH-hhhhcCCCCeEEEecceEEEEEe
Q 008331          161 ----PPMLQWQSAVRDGLLEAGVLPYNGFTFDHIYGTKVSGTIFDEDGHRHSA-AD-LLEYADPEKLTVYLRAVVQRIKF  234 (570)
Q Consensus       161 ----~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~-~~-~l~~~~~~g~~i~~~~~V~~i~~  234 (570)
                          ....++.+.+.+++.++|++...........++..+.........+..+ .. +.+..++.|++|++++.|++|++
T Consensus       174 ~~~~~~~~p~~~~~~~a~~~~G~~~~~d~n~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~nl~i~t~~~V~rI~~  253 (385)
T d1cf3a1         174 RDTGDDYSPIVKALMSAVEDRGVPTKKDFGCGDPHGVSMFPNTLHEDQVRSDAAREWLLPNYQRPNLQVLTGQYVGKVLL  253 (385)
T ss_dssp             CCCSSCBCTHHHHHHHHHHTTTCCBCCCTTSSCCCEEECCCBSBCTTCBBCCHHHHHTGGGTTCTTEEEEESCEEEEEEE
T ss_pred             cccccccCHHHHHHHHHHHHcCCCCcCCcccccccccccccccccccccchhhhhhhcCchhcCCcccccCCceEEEEEE
Confidence                0123566788899999998654333222222222111211223334433 33 44678889999999999999999


Q ss_pred             cCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHHhCCCChhhhhhcCCcccccCC
Q 008331          235 TETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQP  305 (570)
Q Consensus       235 ~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGiG~~~~l~~~gi~~~~~~p  305 (570)
                      ++++ ...|++||++.+.+|+.++++    ++|+||||||+|+||+|||+|||||+++|+++||+++.|+|
T Consensus       254 ~~~~-~~~ra~GV~~~~~~g~~~~v~----A~keVILsAGAi~SP~LLl~SGIGp~~~L~~~gI~~~~dlP  319 (385)
T d1cf3a1         254 SQNG-TTPRAVGVEFGTHKGNTHNVY----AKHEVLLAAGSAVSPTILEYSGIGMKSILEPLGIDTVVDLP  319 (385)
T ss_dssp             ECSS-SSCEEEEEEEEEETTEEEEEE----EEEEEEECSCTTTHHHHHHHTTBSCHHHHGGGTCCCSBCCC
T ss_pred             cCCC-ceeEEEEEEEEcCCCCEEEEE----eCCEEEEcCchhhCHHHHHhcCCCcHHHHHHCCCCeEEECC
Confidence            8764 456899999988889888887    67889999999999999999999999999999998776654

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=100.00  E-value=1.7e-48  Score=396.74  Aligned_cols=289  Identities=45%  Similarity=0.764  Sum_probs=229.7

Q ss_pred             ceeeecccCCCCCCcccEEEECCCCchhHHHHhhhccCeEEEEccCCCCCCCCCccccccccccc-CCCCCCCCCccccc
Q 008331           27 YTFVKDATSAPLISYYDYIIVGGGTSGCPLAATLSQNATVLLLEKGGSPYENPNITDTGNFATTL-LDPSPTSPSQQFIS  105 (570)
Q Consensus        27 ~~~~~~~~~~~~~~~~DvIIVGsG~aG~~~A~~La~g~~VlvLE~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  105 (570)
                      .++.-+...+..+.+|||||||||+||+++|.||||+.||||||+|+.....+....+..+.... ..+.+.+..+....
T Consensus        12 ~~~~~~~~~~~~~~~YD~IIVGsG~aG~vlA~rLae~~kVLvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (351)
T d1ju2a1          12 LSFAYDATDLELEGSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKTPVERFVS   91 (351)
T ss_dssp             GGGEEEGGGSCSEEEEEEEEECCSTTHHHHHHHHTTTSCEEEECSSBCGGGSGGGGBGGGHHHHHHSCCCSSSSEEEEEC
T ss_pred             EeeccCCCCccccCCccEEEECccHHHHHHHHHhcCCCCEEEEecCCCCcCccccccchhhhccCcCCCCCCCccccccC
Confidence            44556777777788999999999999999999999989999999998644333333333333222 23445566667777


Q ss_pred             CCcccccCCceeccccccCceeeeCCChhhhhh--CCCChhhhhhhhHHHHhhccCCCCCcchHHHHHHHHHHcCCCCCC
Q 008331          106 EDGVYNARARVLGGGSVINAGFYTRASLRYVRE--VGWTESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLLEAGVLPYN  183 (570)
Q Consensus       106 ~~~~~~~~g~~lGG~s~~~~~~~~r~~~~~~~~--~gw~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~  183 (570)
                      ++++.+.+|++|||+|.+|++++.|+.+.+++.  .+|+|+++.+||+++|......+........+.+++.+.|+++..
T Consensus        92 ~~~~~~~rG~~lGGsS~in~~~~~R~~~~dfd~~~~~W~~~~~~p~~~~~e~~~~~~~~~~~~~~~~~~a~~~~g~~~~~  171 (351)
T d1ju2a1          92 EDGIDNVRGRVLGGTSIINAGVYARANTSIYSASGVDWDMDLVNQTYEWVEDTIVYKPNSQSWQSVTKTAFLEAGVHPNH  171 (351)
T ss_dssp             TTSCEEEEECBTTGGGGTSCCEECBCCTTSSTTSSSCCCHHHHHHHHHHHHHHHCBCCCCCHHHHHHHHHHHHTTCCCEE
T ss_pred             CCceeeeeeeecccccccceeeeccCCHHHHhhcccccChhHhCcceeecccccccccccccccccccchhhhhcccccc
Confidence            888999999999999999999999999977665  569999999999999998888888888888888899999886543


Q ss_pred             CCCcCCCCcceeeeeEECCCCccccHHHhhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecC
Q 008331          184 GFTFDHIYGTKVSGTIFDEDGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNN  263 (570)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~g~r~~~~~~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~  263 (570)
                      .+......++......+...+.++.+..|++.+.+.|++|++++.|++|++++.  .+.+++||++.+.+|..+++.++ 
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~a~~~nl~i~~~~~V~rv~~~~~--~g~~a~gV~~~~~~g~~~~~~v~-  248 (351)
T d1ju2a1         172 GFSLDHEEGTRITGSTFDNKGTRHAADELLNKGNSNNLRVGVHASVEKIIFSNA--PGLTATGVIYRDSNGTPHQAFVR-  248 (351)
T ss_dssp             EECCBCCSEEEECEESBCTTSBBCCGGGGGGGSCTTTEEEEESCEEEEEEECCS--SSCBEEEEEEECTTSCEEEEEEE-
T ss_pred             ccccccccccccccccccCCCcccccchhhccchhhhhhhhccchhhceeeecc--ccceeeEEEEEeCCCceEEEEee-
Confidence            332223333333333334455666666688888899999999999999999864  34599999999877765544332 


Q ss_pred             CCCceEEEcCCccccHHHHHHhCCCChhhhhhcCCcccccCCccCcccccCCCcee
Q 008331          264 GGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMNAL  319 (570)
Q Consensus       264 ~aa~~VVLaaGa~~tp~LLl~SGiG~~~~l~~~gi~~~~~~p~VG~~l~dh~~~~~  319 (570)
                       ++++||||||+|+||+|||+|||||+++|+++||+++.|+|.||+|||||+...+
T Consensus       249 -a~~eVILsAGaI~TP~LLl~SGIGp~~~L~~~gI~~~~dlPgVG~NL~DH~~~~~  303 (351)
T d1ju2a1         249 -SKGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQCLVGKVLDGD  303 (351)
T ss_dssp             -EEEEEEECCHHHHHHHHHHHTTEECHHHHHHTTCCCSEECTTTTESCBTTTBCTT
T ss_pred             -cCcEEEEeCccccCHHHHHHcCCCCHHHHHHcCCCeeccCCCcccccccCcCcce
Confidence             6788999999999999999999999999999999999999999999999986554

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=100.00  E-value=7e-48  Score=393.92  Aligned_cols=259  Identities=24%  Similarity=0.266  Sum_probs=181.4

Q ss_pred             cccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCCCCCcccccccccc--cC-------CCCCCCCCcccccCCccc
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYENPNITDTGNFATT--LL-------DPSPTSPSQQFISEDGVY  110 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~~~~~~~~~~~~~~--~~-------~~~~~~~~~~~~~~~~~~  110 (570)
                      +|||||||||++|+++|.||+| |.||||||+|+.............+...  ..       .+.+.+.++....++.+.
T Consensus         2 ~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (360)
T d1kdga1           2 PYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPGLFESLFTDSNPFWWCKDIT   81 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCCSGGGTCCCCCGGGGGGTCCTTTCGGGGGGGGTCSCCTTBCTTBS
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCeEEEEEccCCCCcccccccccchhhccCcccccCcccccccccCCCcccCCcccc
Confidence            6999999999999999999999 9999999999754322211111111111  11       122234455566677888


Q ss_pred             ccCCceeccccccCceeeeCCChhhhhh-CCC--ChhhhhhhhHHHHhhccCCCCC--------cchHHHHHHHHHHcCC
Q 008331          111 NARARVLGGGSVINAGFYTRASLRYVRE-VGW--TESLVNSSYEWVEKKVAHEPPM--------LQWQSAVRDGLLEAGV  179 (570)
Q Consensus       111 ~~~g~~lGG~s~~~~~~~~r~~~~~~~~-~gw--~~~~l~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~G~  179 (570)
                      +.+|+++||+|.+|++++.|+.+.+++. .+|  .|+++.+||+++|+.+......        ......+.+.+++.|+
T Consensus        82 ~~~G~~lGGsS~in~~~~~r~~~~D~~~~~gwp~~~~~l~py~~~~e~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~  161 (360)
T d1kdga1          82 VFAGCLVGGGTSVNGALYWYPNDGDFSSSVGWPSSWTNHAPYTSKLSSRLPSTDHPSTDGQRYLEQSFNVVSQLLKGQGY  161 (360)
T ss_dssp             SCCBCSTTGGGGTSCCBCCCCCGGGGCGGGTCCGGGSCCHHHHHHHHHHSCCBSCCSTTSCCCSCHHHHHHHHHHHTTTC
T ss_pred             ccceeeecchhccccccccccchhhheecccccccccchhhhhhhhhccccccceecCCCcccccchhHHHHHHHHHhhc
Confidence            9999999999999999999999865543 567  4689999999999887543221        1223456667777776


Q ss_pred             CCCC--CCCcCCCCcceeeeeEECCCCccccHHH-hhh-hcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecC--
Q 008331          180 LPYN--GFTFDHIYGTKVSGTIFDEDGHRHSAAD-LLE-YADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHV--  253 (570)
Q Consensus       180 ~~~~--~~~~~~~~~~~~~~~~~~~~g~r~~~~~-~l~-~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~--  253 (570)
                      ....  ........++......| .+|.|+++.. |++ +..+.|++|++++.|++|+++++     +++||++.+..  
T Consensus       162 ~~~~~~~~~~~~~~~~g~~~~~~-~~G~R~s~~~~yl~~a~~r~nl~i~t~~~V~rI~~d~~-----ra~GV~~~~~~~~  235 (360)
T d1kdga1         162 NQATINDNPNYKDHVFGYSAFDF-LNGKRAGPVATYLQTALARPNFTFKTNVMVSNVVRNGS-----QILGVQTNDPTLG  235 (360)
T ss_dssp             EECCGGGSTTCCTTEEEECCBCE-ETTEECHHHHTHHHHHHTCTTEEEECSCCEEEEEEETT-----EEEEEEESCTTSS
T ss_pred             cCCCcccCCCccccccceeeeec-cccccccccchhhhhhhcccccccccCcEEEEEEEeCC-----EEEEEEEEecccC
Confidence            3211  11000011111111111 4688877655 775 56778999999999999999876     99999998532  


Q ss_pred             -CceEEEEecCCCCceEEEcCCccccHHHHHHhCCCChhhhhhcCCcccccCCccCcccccC
Q 008331          254 -GARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDN  314 (570)
Q Consensus       254 -G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGiG~~~~l~~~gi~~~~~~p~VG~~l~dh  314 (570)
                       ++..++.    ++|+||||||+|+||+|||+|||||+++|+..||.     |.||++|.+|
T Consensus       236 ~~~~~~v~----a~~eVILsAGai~SP~LLl~SGIGp~~~L~~~gi~-----p~v~~~l~~~  288 (360)
T d1kdga1         236 PNGFIPVT----PKGRVILSAGAFGTSRILFQSGIGPTDMIQTVQSN-----PTAAAALPPQ  288 (360)
T ss_dssp             GGGEEEEE----EEEEEEECSHHHHHHHHHHHTTBSCHHHHHHHHTS-----HHHHHHSCCG
T ss_pred             cceEEEEE----ECCEEEEechhHhChHHHHhcCCCchhhhHHhhcC-----cccccccccc
Confidence             3445555    77899999999999999999999999999998873     3455555443

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=100.00  E-value=3.6e-40  Score=338.81  Aligned_cols=238  Identities=19%  Similarity=0.128  Sum_probs=132.5

Q ss_pred             CCCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCCCCCccccccc----------cc-------ccC----CCC
Q 008331           38 LISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYENPNITDTGNF----------AT-------TLL----DPS   95 (570)
Q Consensus        38 ~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~~~~~~~~~~~----------~~-------~~~----~~~   95 (570)
                      ++.+|||||||||++|+++|.+|++ |+||||||+|+..........+...          ..       ...    .+.
T Consensus         1 md~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (379)
T d2f5va1           1 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFVNVIQGQLMSVSVPVNTLV   80 (379)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSSSSTTCCTTCSHHHHHCGGGHHHHHHHTCEESCCCCCCCC
T ss_pred             CCCcccEEEECcCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccccchhhcccccccccccccccccccccccccccccc
Confidence            3678999999999999999999999 9999999999865443222111100          00       000    000


Q ss_pred             CCCC-----------------CcccccCCcccccCCceeccccccCceeeeCCChhhhhhC-CCCh----hhhhhhhHHH
Q 008331           96 PTSP-----------------SQQFISEDGVYNARARVLGGGSVINAGFYTRASLRYVREV-GWTE----SLVNSSYEWV  153 (570)
Q Consensus        96 ~~~~-----------------~~~~~~~~~~~~~~g~~lGG~s~~~~~~~~r~~~~~~~~~-gw~~----~~l~~~~~~~  153 (570)
                      ....                 .+.........+..++.+||.+.+|.+.+.|..+.++... ....    ..+...|+.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gg~~~~~~~~~~r~~~~d~~~~~~~~~~~~~~~~~~~~~~~  160 (379)
T d2f5va1          81 VDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRVVGGMSTHWTCATPRFDREQRPLLVKDDADADDAEWDRLYTKA  160 (379)
T ss_dssp             CCCSCTTSCCCSSCCCCTTCCTTCCTTSCCTTCEECCSTTGGGGTCCCBCCCCCGGGSCCSSSSCHHHHHHHHHHHHHHH
T ss_pred             ccCCCCCCccCCCeEeccCCCchhhhhhccccchhhhcCCCCccccccEeccCCHHHhhhccccCCCccCCcCccchhhh
Confidence            0000                 0000000111233467899999999999999988654321 0000    1223344444


Q ss_pred             HhhccCCCCC---cchHHHHHHHHHHcCCCCCCCCCcCCCCcceeeeeEECCCCccccH-H-------HhhhhcCCCCeE
Q 008331          154 EKKVAHEPPM---LQWQSAVRDGLLEAGVLPYNGFTFDHIYGTKVSGTIFDEDGHRHSA-A-------DLLEYADPEKLT  222 (570)
Q Consensus       154 ~~~~~~~~~~---~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~-~-------~~l~~~~~~g~~  222 (570)
                      +..+......   ......+.+.+........ ++     ...+.....+.....++.. .       .++..+.+.|++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (379)
T d2f5va1         161 ESYFQTGTDQFKESIRHNLVLNKLAEEYKGQR-DF-----QQIPLAATRRSPTFVEWSSANTVFDLQNRPNTDAPEERFN  234 (379)
T ss_dssp             HHHHTEESCTTTTCHHHHHHHHHHHHHTTTSS-CC-----EECCEEEEEEETTEEEECCHHHHCCCCCEEETTEEEEEEE
T ss_pred             hhhhhHHHHHHHHHHHhcCCCCCccccccccc-Cc-----ccccchhccCCCCCCCcCCCCcccchhhcchHHhcCCCCE
Confidence            4433221111   1111222333332221110 00     0000000000011111111 1       122344567999


Q ss_pred             EEecceEEEEEecCCCCCCCeEEEEEEEec-CCceEEEEecCCCCceEEEcCCccccHHHHHHhCCCC
Q 008331          223 VYLRAVVQRIKFTETGRAKPTAHCVTFYDH-VGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGP  289 (570)
Q Consensus       223 i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~-~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGiG~  289 (570)
                      |++++.|++|++++.+   .|++||++.|. +|+.+.+.     +|+||||||+++||+||++|||++
T Consensus       235 l~~~a~V~~i~~~~~~---~r~~gV~~~d~~~g~~~~i~-----a~~vilaaGa~~tp~lL~~Sg~~~  294 (379)
T d2f5va1         235 LFPAVACERVVRNALN---SEIESLHIHDLISGDRFEIK-----ADVYVLTAGAVHNTQLLVNSGFGQ  294 (379)
T ss_dssp             EECSEEEEEEEECTTS---SCEEEEEEEETTTCCEEEEE-----EEEEEECSCHHHHHHHHHHTTSSC
T ss_pred             EecCCEEEEEEEeCCC---CEEEEEEEEECCCCEEEEEe-----ceEEEeccCccCCHHHHhhccccc
Confidence            9999999999998643   38999999975 46666664     799999999999999999998754

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=100.00  E-value=2.8e-35  Score=301.78  Aligned_cols=237  Identities=17%  Similarity=0.184  Sum_probs=151.9

Q ss_pred             CCCCCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCCC-CCcccccccc----cccC---------------CC
Q 008331           36 APLISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYEN-PNITDTGNFA----TTLL---------------DP   94 (570)
Q Consensus        36 ~~~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~~-~~~~~~~~~~----~~~~---------------~~   94 (570)
                      +...+.|||||||||++|+++|.+|++ |+||||||+|..+... ..........    ....               .+
T Consensus         2 ~~~~~~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (370)
T d3coxa1           2 LADGDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMWLADKTDQPVSNFMGFGI   81 (370)
T ss_dssp             CCTTCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCSCSCCTTSCSSCCSSSCCTTSBBSCSBCCCSSCSBTTBSC
T ss_pred             CCCCCCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCccccccccccccccccccccccccccccccccccccc
Confidence            345678999999999999999999999 9999999999754321 1111100000    0000               01


Q ss_pred             CCC----CCCcccccCCcccccCCceeccccccCceeeeCCChhhhhh---CCCChhhhhhhhHHHHhhccCCCCC----
Q 008331           95 SPT----SPSQQFISEDGVYNARARVLGGGSVINAGFYTRASLRYVRE---VGWTESLVNSSYEWVEKKVAHEPPM----  163 (570)
Q Consensus        95 ~~~----~~~~~~~~~~~~~~~~g~~lGG~s~~~~~~~~r~~~~~~~~---~gw~~~~l~~~~~~~~~~~~~~~~~----  163 (570)
                      .+.    ...........+.+.+++++||+|.+|++++.|+.+++++.   ..+.++++++||+++++.+++.+..    
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~g~~vGG~S~~~~~~~~r~~~~df~~~~~~~~~~~~~~~~y~~~e~~lgv~~~~~~~~  161 (370)
T d3coxa1          82 NKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRNYFEEILPSVDSNEMYNKYFPRANTGLGVNNIDQAWF  161 (370)
T ss_dssp             CCBCCCCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHCTTSCHHHHHHTHHHHHHHHHTCBCCCHHHH
T ss_pred             CcccccccccccccCCCcceeeeeccccccccccCceeccCCHHHhhcccccCCcHHHHHHHHHHHHHhcCCccccCCcc
Confidence            110    01111223345667789999999999999999999976654   1223477999999999998876532    


Q ss_pred             -----cchHHHHHHHHHHcCCCCCC---CC-------------CcCCCCcceeeeeEECCCCccccHHHhhh-hcCCCCe
Q 008331          164 -----LQWQSAVRDGLLEAGVLPYN---GF-------------TFDHIYGTKVSGTIFDEDGHRHSAADLLE-YADPEKL  221 (570)
Q Consensus       164 -----~~~~~~~~~~~~~~G~~~~~---~~-------------~~~~~~~~~~~~~~~~~~g~r~~~~~~l~-~~~~~g~  221 (570)
                           .+..+.+.+...+.|+.+..   ..             .+..+.+|.   ..+...++.+....||+ +.++.|+
T Consensus       162 ~~~~~~~~~~~~~~~a~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~k~s~~~~~L~~a~~~g~~  238 (370)
T d3coxa1         162 ESTEWYKFARTGRKTAQRSGFTTAFVPNVYDFEYMKKEAAGQVTKSGLGGEV---IYGNNAGKKSLDKTYLAQAAATGKL  238 (370)
T ss_dssp             HHCGGGHHHHHHHHHHHHTTCCEEECCBSBCHHHHHHHHTTSSCCSTTTTCS---TTCCSSSBCCGGGTHHHHHHHTTCE
T ss_pred             cCCCCccHHHHHHHHHHHcCCccccccccccccccccccccccccceecccc---cccccccccChHHHHHHHHHhCCCc
Confidence                 23345667777777774210   00             011111111   11112233334445776 4456679


Q ss_pred             EEEecceEEEEEecCCCCCCCeEEEEEE--EecCCce---EEEEecCCCCceEEEcCCccccHHHHHHh
Q 008331          222 TVYLRAVVQRIKFTETGRAKPTAHCVTF--YDHVGAR---HRACLNNGGKNEIILSAGAIGSPQLLMLS  285 (570)
Q Consensus       222 ~i~~~~~V~~i~~~~~~~~~~~v~GV~~--~~~~G~~---~~v~~~~~aa~~VVLaaGa~~tp~LLl~S  285 (570)
                      +|+++++|++|+++++     ++.+|.+  .+..++.   +++     .+|.||||||+|+||+|||+|
T Consensus       239 ~i~t~~~V~~I~~~~~-----~~~~V~v~~~~~~~~~~~~~~~-----~A~~VILaAGai~Tp~LLL~S  297 (370)
T d3coxa1         239 TITTLHRVTKVAPATG-----SGYSVTMEQIDEQGNVVATKVV-----TADRVFFAAGSVGTSKLLVSM  297 (370)
T ss_dssp             EEECSEEEEEEEECSS-----SSEEEEEEEECTTSCEEEEEEE-----EEEEEEECSHHHHHHHHHHHH
T ss_pred             EEEecCcEEEEEEcCC-----CeEEEEEEEeCCccceeeEEEE-----ECCEEEEeeCHHHhHHHHHhC
Confidence            9999999999999876     4455554  4444443   344     368999999999999999999

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=100.00  E-value=4.5e-35  Score=299.83  Aligned_cols=234  Identities=18%  Similarity=0.170  Sum_probs=151.9

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCCCCC-ccccccc----ccc--cCC------------------CC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYENPN-ITDTGNF----ATT--LLD------------------PS   95 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~~~~-~~~~~~~----~~~--~~~------------------~~   95 (570)
                      +||||||||++|+++|.+|+| |+||||||+|..+..... .......    ...  ..+                  +.
T Consensus         3 v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWFKNRTEAPLGSFLWLDVVNRNID   82 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCCCCCCTTSSSSCCTTSCCGGGSBSCSBCCCCTTCHHHHGGGCCBCC
T ss_pred             CeEEEeCcCHHHHHHHHHHHHCcCeEEEEecCCCCCCccccccccccccccccccccccccccccccccccccCCCcccc
Confidence            699999999999999999999 999999999976532111 0000000    000  000                  00


Q ss_pred             CCCCCcccccCCcccccCCceeccccccCceeeeCCChhhhhh---CCCChhhhhhhhHHHHhhccCCCCCc--------
Q 008331           96 PTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRASLRYVRE---VGWTESLVNSSYEWVEKKVAHEPPML--------  164 (570)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~g~~lGG~s~~~~~~~~r~~~~~~~~---~gw~~~~l~~~~~~~~~~~~~~~~~~--------  164 (570)
                      +..........+.+.+.+|+++||+|.+|++++.|+.+.+++.   ..|.++++++||+++++.++..+...        
T Consensus        83 ~~~g~~~~~~~~~~~~~~g~~lGG~S~i~~~~~~r~~~~~f~~~~~~~~~~~~l~pyy~~ae~~l~~~~~~~~~~~~~~~  162 (367)
T d1n4wa1          83 PYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKRSYFEEILPRVDSSEMYDRYFPRANSMLRVNHIDTKWFEDTEW  162 (367)
T ss_dssp             CCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHCTTSCHHHHHHTHHHHHHHHHTCBCCCHHHHHHCGG
T ss_pred             cccCccccccCCccceeeEEecCCCCceecceeeccChhHhhccccccCcHHHHHHHHHHHHHHhCCCCCCCCccccCCC
Confidence            0111112223445667889999999999999999999977664   12235889999999999987765432        


Q ss_pred             -chHHHHHHHHHHcCCCCCCC---C-----------CcCCCCcceeeeeEECCCCcccc-HHHhhhhc-CCCCeEEEecc
Q 008331          165 -QWQSAVRDGLLEAGVLPYNG---F-----------TFDHIYGTKVSGTIFDEDGHRHS-AADLLEYA-DPEKLTVYLRA  227 (570)
Q Consensus       165 -~~~~~~~~~~~~~G~~~~~~---~-----------~~~~~~~~~~~~~~~~~~g~r~~-~~~~l~~~-~~~g~~i~~~~  227 (570)
                       +..+.+.+.....|+.....   .           ....+..|..+ ..+ ..+.+.+ ...|++.+ ++.|++|+++|
T Consensus       163 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~-~~~-~~~~k~s~~~~yl~~a~~~gn~~i~~~t  240 (367)
T d1n4wa1         163 YKFARVSREQAGKAGLGTVFVPNVYDFGYMQREAAGEVPKSALATEV-IYG-NNHGKQSLDKTYLAAALGTGKVTIQTLH  240 (367)
T ss_dssp             GHHHHHHHHHHHHTTCCEEECCBSBCHHHHHHHHTTSSCCSGGGTCS-TTC-CSSSBCCTTTTHHHHHHHTTSEEEEESE
T ss_pred             ChHHHHHHHHHHHcCcccccccchhhcCCcccccccccCcccccccc-ccc-ccccccChhHhhhHHHHhCCCeEEECCC
Confidence             22345667777777742100   0           00001111111 111 2233443 44577644 45569999999


Q ss_pred             eEEEEEecCCCCCCCeEEEEEEEecCCce---EEEEecCCCCceEEEcCCccccHHHHHHh
Q 008331          228 VVQRIKFTETGRAKPTAHCVTFYDHVGAR---HRACLNNGGKNEIILSAGAIGSPQLLMLS  285 (570)
Q Consensus       228 ~V~~i~~~~~~~~~~~v~GV~~~~~~G~~---~~v~~~~~aa~~VVLaaGa~~tp~LLl~S  285 (570)
                      +|++|++++++   .++++|++.+.++..   +++     .+|.||||||+|+||+|||+|
T Consensus       241 ~V~~I~~~~~g---~~~v~v~~~~~~~~~~~~~~i-----~Ak~VVLaAGai~Tp~LLl~S  293 (367)
T d1n4wa1         241 QVKTIRQTKDG---GYALTVEQKDTDGKLLATKEI-----SCRYLFLGAGSLGSTELLVRA  293 (367)
T ss_dssp             EEEEEEECTTS---SEEEEEEEECTTCCEEEEEEE-----EEEEEEECSHHHHHHHHHHHH
T ss_pred             EEEEEEEcCCC---CEEEEEEEECCCCcceeEEEE-----ecCEEEEecchhcCHHHHHhC
Confidence            99999998763   377888888765543   344     479999999999999999999

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.75  E-value=5.9e-18  Score=167.26  Aligned_cols=187  Identities=17%  Similarity=0.142  Sum_probs=111.1

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCCCCCcccccccccccCCCCCCCCCcccccCCcccccCCcee
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYENPNITDTGNFATTLLDPSPTSPSQQFISEDGVYNARARVL  117 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l  117 (570)
                      .++|||||||+|++|+++|++|++ |+||+||||++.                                          .
T Consensus        14 ~e~~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~------------------------------------------~   51 (308)
T d1y0pa2          14 HDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPV------------------------------------------I   51 (308)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS------------------------------------------S
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC------------------------------------------C
Confidence            568999999999999999999999 999999999863                                          3


Q ss_pred             ccccccCceeeeCCChhhhhhCCCChhhhhhhhHHHHhhccCCCCCcc------hHHHHHHHHHHcCCCCCCCCCcCCCC
Q 008331          118 GGGSVINAGFYTRASLRYVREVGWTESLVNSSYEWVEKKVAHEPPMLQ------WQSAVRDGLLEAGVLPYNGFTFDHIY  191 (570)
Q Consensus       118 GG~s~~~~~~~~r~~~~~~~~~gw~~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~G~~~~~~~~~~~~~  191 (570)
                      ||+|.+..+.+...........+.. +..+.+++..........+...      ......+++.+.|++... ..  ...
T Consensus        52 gG~s~~s~G~~~~~~~~~~~~~~~~-d~~~~~~~d~~~~~~~~~d~~lv~~~~~~~~~~i~~L~~~Gv~~~~-~~--~~~  127 (308)
T d1y0pa2          52 GGNAKLAAGGMNAAWTDQQKAKKIT-DSPELMFEDTMKGGQNINDPALVKVLSSHSKDSVDWMTAMGADLTD-VG--MMG  127 (308)
T ss_dssp             CTTGGGCCSCEECSSCHHHHHTTCC-CCHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCCE-EE--CCT
T ss_pred             CCcceecCCCCccccchhhhhhhcc-chHHHHHHHHHhhhhhccchHHHHHHHHhhhHHHHHHHHcCCCccc-cc--ccc
Confidence            4555555554444333222211111 1222233322222111111110      112345667777764211 10  011


Q ss_pred             cceeeeeEECCCCcccc---HHHhhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCce
Q 008331          192 GTKVSGTIFDEDGHRHS---AADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNE  268 (570)
Q Consensus       192 ~~~~~~~~~~~~g~r~~---~~~~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~  268 (570)
                      +........+.......   ...++..+.+.|++|+++++|++|+.++++    +|+||.+.+.++..+.++     +|.
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gv~i~~~~~v~~li~~~~G----~V~Gv~~~~~~~~~~~i~-----Ak~  198 (308)
T d1y0pa2         128 GASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKG----TVKGILVKGMYKGYYWVK-----ADA  198 (308)
T ss_dssp             TCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEECTTS----CEEEEEEEETTTEEEEEE-----CSE
T ss_pred             ccccccccccccccchHHHHHHHHHHHHHhccceEEEeeccchhhhhccc----ccccccccccccceeEee-----cCe
Confidence            11111122222221111   122445667789999999999999998775    999999998777777775     799


Q ss_pred             EEEcCCccccHH
Q 008331          269 IILSAGAIGSPQ  280 (570)
Q Consensus       269 VVLaaGa~~tp~  280 (570)
                      ||||+|+|....
T Consensus       199 VVlAtGG~~~n~  210 (308)
T d1y0pa2         199 VILATGGFAKNN  210 (308)
T ss_dssp             EEECCCCCTTCH
T ss_pred             EEEccCcccccH
Confidence            999999997533

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.72  E-value=1.2e-17  Score=166.16  Aligned_cols=190  Identities=21%  Similarity=0.178  Sum_probs=111.1

Q ss_pred             CCCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCCCCCcccccccccccCCCCCCCCCcccccCCcccccCCce
Q 008331           38 LISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYENPNITDTGNFATTLLDPSPTSPSQQFISEDGVYNARARV  116 (570)
Q Consensus        38 ~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  116 (570)
                      ..+++||||||+|++|+++|++|++ |+||+||||++..                                         
T Consensus        20 ~~et~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~-----------------------------------------   58 (322)
T d1d4ca2          20 VKETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIP-----------------------------------------   58 (322)
T ss_dssp             CCEECSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSS-----------------------------------------
T ss_pred             CCCcceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC-----------------------------------------
Confidence            4567999999999999999999999 9999999998643                                         


Q ss_pred             eccccccCceeeeCCChhhhhhCCCChhhhhhhhHHHHhhccCCCCCcc------hHHHHHHHHHHcCCCCCCCCCcCCC
Q 008331          117 LGGGSVINAGFYTRASLRYVREVGWTESLVNSSYEWVEKKVAHEPPMLQ------WQSAVRDGLLEAGVLPYNGFTFDHI  190 (570)
Q Consensus       117 lGG~s~~~~~~~~r~~~~~~~~~gw~~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~G~~~~~~~~~~~~  190 (570)
                       ||+|....+.+...........+ ..+..+.++++.........+...      ......+++.+.|++.. ...  ..
T Consensus        59 -gG~s~~s~Ggi~~~~~~~~~~~~-~~d~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~i~~l~~~Gv~~~-~~~--~~  133 (322)
T d1d4ca2          59 -GGNTKLAAGGMNAAETKPQAKLG-IEDKKQIMIDDTMKGGRNINDPELVKVLANNSSDSIDWLTSMGADMT-DVG--RM  133 (322)
T ss_dssp             -CTTGGGCCSCEECSSCHHHHHTT-CCCCHHHHHHHHHHHTTTCSCHHHHHHHHHTHHHHHHHHHHTTCCCC-EEE--CC
T ss_pred             -CCcccccCCcccccCchhhhhcc-cCCCHHHHHHHHHhccccccCHHHhhhhhhhhhhhhhhhhhhccccc-ccc--cc
Confidence             34444444433333222221111 112222333333222111111110      11234566777787421 110  01


Q ss_pred             CcceeeeeEECCCCcc---ccHHHhhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCc
Q 008331          191 YGTKVSGTIFDEDGHR---HSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKN  267 (570)
Q Consensus       191 ~~~~~~~~~~~~~g~r---~~~~~~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~  267 (570)
                      .+........+..+..   .....+...+.+.|++|+++++|++|+.++++    +|+||.+.+.++....++     +|
T Consensus       134 ~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gv~i~~~t~v~~li~d~~G----~V~Gv~~~~~~~~~~~i~-----Ak  204 (322)
T d1d4ca2         134 GGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASG----KVTGVLVKGEYTGYYVIK-----AD  204 (322)
T ss_dssp             TTCSSCCEEESTTTCCSHHHHHHHHHHHHHHTTCEEETTEEEEEEECCSSS----CCCEEEEEETTTEEEEEE-----CS
T ss_pred             cccccccccccccccchhHHHHHHHHHHHHhcCceEEEeeecccccccccc----cccceEEEeecccEEEEe-----CC
Confidence            1111111111112211   11222455666789999999999999998765    999999998777666664     79


Q ss_pred             eEEEcCCccccHHHH
Q 008331          268 EIILSAGAIGSPQLL  282 (570)
Q Consensus       268 ~VVLaaGa~~tp~LL  282 (570)
                      .||||+|+|....-|
T Consensus       205 ~VIlAtGG~~~n~~~  219 (322)
T d1d4ca2         205 AVVIAAGGFAKNNER  219 (322)
T ss_dssp             EEEECCCCCTTCHHH
T ss_pred             eEEEcCCCcccCHHH
Confidence            999999999754333

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.72  E-value=1.5e-17  Score=164.96  Aligned_cols=191  Identities=16%  Similarity=0.150  Sum_probs=112.7

Q ss_pred             CCCCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCCCCCcccccccccccCCCCCCCCCcccccCCcccccCCc
Q 008331           37 PLISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYENPNITDTGNFATTLLDPSPTSPSQQFISEDGVYNARAR  115 (570)
Q Consensus        37 ~~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  115 (570)
                      ...+++||||||+|.+|+++|++|++ |+||+||||++..                                        
T Consensus        15 ~~~e~~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~~----------------------------------------   54 (317)
T d1qo8a2          15 GPSETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFS----------------------------------------   54 (317)
T ss_dssp             CCSEEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSS----------------------------------------
T ss_pred             CCCCccCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC----------------------------------------
Confidence            34678999999999999999999999 9999999999643                                        


Q ss_pred             eeccccccCceeeeCCChhhhhhCCCChhhhhhhhHHHHhhccCCCCCcch------HHHHHHHHHHcCCCCCCCCCcCC
Q 008331          116 VLGGGSVINAGFYTRASLRYVREVGWTESLVNSSYEWVEKKVAHEPPMLQW------QSAVRDGLLEAGVLPYNGFTFDH  189 (570)
Q Consensus       116 ~lGG~s~~~~~~~~r~~~~~~~~~gw~~~~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~G~~~~~~~~~~~  189 (570)
                        ||+|....+.+.-.........+.. +..+.++++..+......+....      .....+++.+.|++... ..  .
T Consensus        55 --gG~S~~a~Ggi~a~~~~~~~~~g~~-d~~~~~~~d~~~~~~~~~d~~lv~~~~~~a~~~i~~l~~~Gv~~~~-~~--~  128 (317)
T d1qo8a2          55 --GGNSMISAGGMNAVGTKQQTAHGVE-DKVEWFIEDAMKGGRQQNDIKLVTILAEQSADGVQWLESLGANLDD-LK--R  128 (317)
T ss_dssp             --CTTGGGCCSCEECSSCHHHHHTTCC-CCHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCCE-EE--C
T ss_pred             --CCchhhcCCCcccccchhhhhcccC-CcHHHHHHHHHHhhccccchhHHHHHHhhhhhhhhhHHHhhhcccc-cc--c
Confidence              3444444433332222221111111 22233333333322222211111      12345567777774211 10  0


Q ss_pred             CCcceeeeeEECCCCcccc---HHHhhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCC
Q 008331          190 IYGTKVSGTIFDEDGHRHS---AADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGK  266 (570)
Q Consensus       190 ~~~~~~~~~~~~~~g~r~~---~~~~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa  266 (570)
                      ..+........+..+....   ...+...+++.|++++++++|++|+.++++    +|+||.+.+.++..+.+.     +
T Consensus       129 ~gg~~~~r~~~~~~g~~~g~~i~~~L~~~~~~~g~~i~~~~~v~~l~~~~~g----~V~Gv~~~~~~~~~~~i~-----A  199 (317)
T d1qo8a2         129 SGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDH----SVVGAVVHGKHTGYYMIG-----A  199 (317)
T ss_dssp             CTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEECTTS----BEEEEEEEETTTEEEEEE-----E
T ss_pred             ccCcccccccccccccccchhhhHHHHHHhhhccceeeeccchhheeecccc----cceeeEeecccceEEEEe-----c
Confidence            1111111122122222211   122445677789999999999999987765    999999998888776664     7


Q ss_pred             ceEEEcCCccccHHHH
Q 008331          267 NEIILSAGAIGSPQLL  282 (570)
Q Consensus       267 ~~VVLaaGa~~tp~LL  282 (570)
                      |.||||+|+|....-|
T Consensus       200 k~VVlAtGG~~~n~~~  215 (317)
T d1qo8a2         200 KSVVLATGGYGMNKEM  215 (317)
T ss_dssp             EEEEECCCCCTTCHHH
T ss_pred             cceEEeccccccCHHH
Confidence            9999999999654333

>d1ju2a2 d.16.1.1 (A:294-463) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GMC oxidoreductases
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=99.60  E-value=1.7e-15  Score=133.63  Aligned_cols=107  Identities=34%  Similarity=0.625  Sum_probs=86.1

Q ss_pred             eEEEEeecccccccEEEEec-CCCCCCCCeeecCCCCCHhHHHHHHHHHHHHHHHHcCcccccccCCCcchhHHhhhhcc
Q 008331          399 AGVIVEKIMGPRSTGHLRLR-TLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLMVN  477 (570)
Q Consensus       399 ~~~~~~~~~~p~s~g~v~l~-~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  477 (570)
                      ..++...+++|.|||+|+|+ ++|+.+.|.|+++|+.++.|++.+.+++|.+++++++..++++...+......      
T Consensus        62 ~~~i~~~l~~P~SrG~v~L~~S~dp~~~P~i~~nyl~~~~D~~~~v~~~~~~r~i~~~~~~~~~~~~e~~p~~~------  135 (170)
T d1ju2a2          62 FAHFASKVAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDALKPYKVEDLPGVEG------  135 (170)
T ss_dssp             EEEEEEEESSCSCCEEEECSCSSCTTSCCEECCCTTCSHHHHHHHHHHHHHHHHHHTSGGGGGGCSSCCSTTCS------
T ss_pred             eeEeecccCCccccceEEecCCCCcccCcccCcccccCchhHHHHHHHHHHHHHHHcChhhhhccccccccccc------
Confidence            34566778899999999996 88999999999999999999999999999999999999999988766210000      


Q ss_pred             CCCCCCCCCC-CCCHHHHHHHHHhccccccccccc
Q 008331          478 IPTNLRPRHV-VGASISLEQFCRDTVMTIWHYHGG  511 (570)
Q Consensus       478 ~~~~~~p~~~-~~~~~~i~~~~~~~~~~~~H~~GT  511 (570)
                      +.....|++. .++|+++++|+|+...|.||++|+
T Consensus       136 ~~~~~~p~p~~~~dde~l~~~iR~~~~T~yHyhgg  170 (170)
T d1ju2a2         136 FNILGIPLPKDQTDDAAFETFCRESVASYWHYHGG  170 (170)
T ss_dssp             CCBSSSCCCSCTTCHHHHHHHHHHHCEECSCCEES
T ss_pred             cccccCCCccCCCCHHHHHHHHHhcCEeccCCCCc
Confidence            0000123333 468999999999999999999985

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=3.6e-14  Score=139.67  Aligned_cols=53  Identities=11%  Similarity=0.171  Sum_probs=45.2

Q ss_pred             hcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEe-cCCceEEEEecCCCCceEEEcCCccc
Q 008331          215 YADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYD-HVGARHRACLNNGGKNEIILSAGAIG  277 (570)
Q Consensus       215 ~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~-~~G~~~~v~~~~~aa~~VVLaaGa~~  277 (570)
                      .++..+++|+.++.|++|+.+++     +++||...+ .+|+.+.+.     +|.||||+|+++
T Consensus       144 ~~~~~~v~i~~~~~v~~Ll~d~g-----~v~Gvv~~~~~~g~~~~~~-----AkaVILATGG~g  197 (311)
T d1kf6a2         144 SLQFPQIQRFDEHFVLDILVDDG-----HVRGLVAMNMMEGTLVQIR-----ANAVVMATGGAG  197 (311)
T ss_dssp             HTTCTTEEEEETEEEEEEEEETT-----EEEEEEEEETTTTEEEEEE-----CSCEEECCCCCG
T ss_pred             HHccCcceeEeeeEeeeeEecCC-----cceeEEEEEcCCCcEEEEE-----CCEEEEcCCCcc
Confidence            56677999999999999999886     999998876 567776664     799999999984

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=99.50  E-value=8.4e-14  Score=138.60  Aligned_cols=56  Identities=9%  Similarity=0.058  Sum_probs=47.4

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEe-cCCceEEEEecCCCCceEEEcCCccc
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYD-HVGARHRACLNNGGKNEIILSAGAIG  277 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~-~~G~~~~v~~~~~aa~~VVLaaGa~~  277 (570)
                      +...+.+.|++|+.++.|++++.+++     +++|+.+.+ .+|+...+.     +|.||||+|+++
T Consensus       164 l~~~~~~~gv~i~~~~~~~~li~~~~-----~v~g~~~~~~~~g~~~~i~-----Ak~VvlATGG~~  220 (336)
T d2bs2a2         164 VANECLKLGVSIQDRKEAIALIHQDG-----KCYGAVVRDLVTGDIIAYV-----AKGTLIATGGYG  220 (336)
T ss_dssp             HHHHHHHHTCEEECSEEEEEEEEETT-----EEEEEEEEETTTCCEEEEE-----CSEEEECCCCCG
T ss_pred             HHHHHHhccccccceeeeeecccccc-----cccceeEEeccCCcEEEEe-----cCeEEEeccccc
Confidence            44456778999999999999999987     999999886 468877775     699999999985

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=7.2e-14  Score=137.21  Aligned_cols=58  Identities=7%  Similarity=0.094  Sum_probs=45.0

Q ss_pred             hcCCCCeEEEecceEEEEEecCCC--CCCCeEEEEEEEec-CCceEEEEecCCCCceEEEcCCccc
Q 008331          215 YADPEKLTVYLRAVVQRIKFTETG--RAKPTAHCVTFYDH-VGARHRACLNNGGKNEIILSAGAIG  277 (570)
Q Consensus       215 ~~~~~g~~i~~~~~V~~i~~~~~~--~~~~~v~GV~~~~~-~G~~~~v~~~~~aa~~VVLaaGa~~  277 (570)
                      .+++.+++++.++.+++|+.+++.  ....+|+||.+.+. +|+.+.+     ++|.||||+|+++
T Consensus       147 ~~~~~~v~~~~~~~~~~Li~~~~~~~~~~~rv~Gv~~~~~~~g~~~~~-----~ak~VilAtGG~~  207 (305)
T d1chua2         147 ALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETC-----HAKAVVLATGGAS  207 (305)
T ss_dssp             HHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEE-----ECSEEEECCCCCG
T ss_pred             HHhccCcceeceeEEEEEEEEcCcccccCceEEEEEEEeCCCCcEEEE-----eecceEEeeeccc
Confidence            456789999999999999998652  12348999999864 4555555     5899999999974

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.47  E-value=7.7e-14  Score=132.75  Aligned_cols=56  Identities=18%  Similarity=0.298  Sum_probs=45.0

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHH
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQL  281 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~L  281 (570)
                      ++..+++.|++|+++++|++|..+++     ++.+|...  +|+.  ++     ++.||+|+|+...|++
T Consensus       116 L~~~~~~~gv~i~~~~~v~~i~~~~~-----~~~~v~~~--~g~~--i~-----a~~vI~AtGg~S~p~~  171 (251)
T d2i0za1         116 LLTRLKDLGVKIRTNTPVETIEYENG-----QTKAVILQ--TGEV--LE-----TNHVVIAVGGKSVPQT  171 (251)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEEETT-----EEEEEEET--TCCE--EE-----CSCEEECCCCSSSGGG
T ss_pred             HHHHHHHcCCcccCCcEEEEEEEECC-----EEEEEEeC--CCCe--Ee-----cCeEEEccCCcccccc
Confidence            45566778999999999999999887     78888764  6653  43     7999999999888753

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.46  E-value=6.1e-14  Score=135.93  Aligned_cols=59  Identities=19%  Similarity=0.236  Sum_probs=44.9

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHHhCC
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGV  287 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGi  287 (570)
                      +...+++.|++++++++|++|..+++     ++   .+++.+|+   +     .++.||+|||+ +|++||..-|+
T Consensus       156 l~~~a~~~Gv~i~~~~~V~~i~~~~~-----~v---~V~t~~g~---i-----~a~~VViAaG~-~s~~l~~~lg~  214 (281)
T d2gf3a1         156 YRELAEARGAKVLTHTRVEDFDISPD-----SV---KIETANGS---Y-----TADKLIVSMGA-WNSKLLSKLNL  214 (281)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEECSS-----CE---EEEETTEE---E-----EEEEEEECCGG-GHHHHGGGGTE
T ss_pred             cccccccccccccCCcEEEEEEEECC-----EE---EEEECCcE---E-----EcCEEEECCCC-cchhhHHhcCC
Confidence            45567788999999999999999876     33   34444663   3     37999999998 78888766554

>d1gpea2 d.16.1.1 (A:329-524) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GMC oxidoreductases
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=99.45  E-value=3.1e-14  Score=129.42  Aligned_cols=97  Identities=11%  Similarity=0.081  Sum_probs=83.6

Q ss_pred             eEEEEeecccccccEEEEecCCCCCCCC-eeecCCCCCHhHHHHHHHHHHHHHHHHcCcccccccCCCcchhHHhhhhcc
Q 008331          399 AGVIVEKIMGPRSTGHLRLRTLDADDNP-SVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLMVN  477 (570)
Q Consensus       399 ~~~~~~~~~~p~s~g~v~l~~~d~~~~p-~i~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  477 (570)
                      .+++...+++|.|||+|+|+++||.+.| .|+++|+.++.|++.|.+++|.+++|+++..++.+...+            
T Consensus        96 ~~~~~~~~l~P~SrG~V~l~S~dP~~~pp~I~pnyl~~~~D~~~~~~~~r~~~~i~~t~~l~~~~~~e------------  163 (196)
T d1gpea2          96 KINFDLWDLIPFTRGSVHILSSDPYLWQFANDPKFFLNEFDLLGQAAASKLARDLTSQGAMKEYFAGE------------  163 (196)
T ss_dssp             EEEEEEEESSCCCCBEEEESSSCGGGTCEEEECCTTSSHHHHHHHHHHHHHHHHHHTSTTHHHHEEEE------------
T ss_pred             ceEEeeeccCCccceEEEeeCCCchhcccccchhhcCCchHHHHHHHHHHHHHHHHhhHHHHhhcccc------------
Confidence            4556666789999999999999998766 899999999999999999999999999999888876554            


Q ss_pred             CCCCCCCCCCC---CCHHHHHHHHHhccccccccccc
Q 008331          478 IPTNLRPRHVV---GASISLEQFCRDTVMTIWHYHGG  511 (570)
Q Consensus       478 ~~~~~~p~~~~---~~~~~i~~~~~~~~~~~~H~~GT  511 (570)
                          ..||...   .+|++|++|+|+...+.||++||
T Consensus       164 ----~~Pg~~~~~~~sde~~~~~ir~~~~t~~Hp~GT  196 (196)
T d1gpea2         164 ----TLPGYNLVQNATLSQWSDYVLQNFRPNWHAVSS  196 (196)
T ss_dssp             ----EESGGGSCTTCCHHHHHHHHHHSCEECSCCBCT
T ss_pred             ----cCCCcccCCCCCHHHHHHHHHhcCeecccCCCC
Confidence                3454433   48899999999999999999998

>d1cf3a2 d.16.1.1 (A:325-520) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GMC oxidoreductases
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=99.43  E-value=6.7e-14  Score=127.18  Aligned_cols=96  Identities=14%  Similarity=0.091  Sum_probs=82.3

Q ss_pred             EEEEeecccccccEEEEecCCCCC-CCCeeecCCCCCHhHHHHHHHHHHHHHHHHcCcccccccCCCcchhHHhhhhccC
Q 008331          400 GVIVEKIMGPRSTGHLRLRTLDAD-DNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLMVNI  478 (570)
Q Consensus       400 ~~~~~~~~~p~s~g~v~l~~~d~~-~~p~i~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (570)
                      +.+...+.+|.|||+|+|+++||. +.|.|+++|+.+|.|++.|++++|.+++|+++..++++...+             
T Consensus        97 ~~~~~~~l~P~SrG~V~l~S~dP~~d~P~I~~nyls~~~D~~~~~~~~r~~~~i~~~~~~~~~~~~e-------------  163 (196)
T d1cf3a2          97 ASFDVWDLLPFTRGYVHILDKDPYLHHFAYDPQYFLNELDLLGQAAATQLARNISNSGAMQTYFAGE-------------  163 (196)
T ss_dssp             EEEEEEESSCCCCBEEEESSSCGGGCCEEEECCTTCSHHHHHHHHHHHHHHHHHHTSGGGGGTEEEE-------------
T ss_pred             eeeeeeecCCCcceEEEeeCCCcccCCCccCHhhcCCchHHHHHHHHHHHHHHHHHhHHHHhccccc-------------
Confidence            445556689999999999999997 689999999999999999999999999999999988887554             


Q ss_pred             CCCCCCCCC---CCCHHHHHHHHHhccccccccccc
Q 008331          479 PTNLRPRHV---VGASISLEQFCRDTVMTIWHYHGG  511 (570)
Q Consensus       479 ~~~~~p~~~---~~~~~~i~~~~~~~~~~~~H~~GT  511 (570)
                         ..|+..   ..++++|++|+|+...+.+|++||
T Consensus       164 ---~~Pg~~~~~d~~~~~~~~~ir~~~~t~~Hp~GT  196 (196)
T d1cf3a2         164 ---TIPGDNLAYDADLSAWTEYIPYHFRPNYHGVGT  196 (196)
T ss_dssp             ---EESGGGSCTTCCHHHHHHHGGGSCEECSCCBCT
T ss_pred             ---cCCCcCCCCchhHHHHHHHHHhcCeeccccCCC
Confidence               344443   245688999999999999999998

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.43  E-value=6.6e-14  Score=135.18  Aligned_cols=61  Identities=13%  Similarity=0.169  Sum_probs=46.8

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHHhCCCC
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGP  289 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGiG~  289 (570)
                      +...+++.|++|+.+++|++|..++      ++++|++  .+|+   ++     ++.||+|||+ +|+.|+...|+.+
T Consensus       157 l~~~~~~~Gv~i~~~~~V~~i~~~~------~~~~V~t--~~g~---i~-----a~~vV~AaG~-~s~~l~~~~G~~~  217 (276)
T d1ryia1         157 YVKAAKMLGAEIFEHTPVLHVERDG------EALFIKT--PSGD---VW-----ANHVVVASGV-WSGMFFKQLGLNN  217 (276)
T ss_dssp             HHHHHHHTTCEEETTCCCCEEECSS------SSEEEEE--TTEE---EE-----EEEEEECCGG-GTHHHHHHTTCCC
T ss_pred             HHHHHHHcCCEEecceEEEeEEeec------ceEEEec--CCeE---EE-----cCEEEECCCc-cHHHHHhhcCCCc
Confidence            4456778899999999999998764      4556665  3553   43     6899999999 7999988887643

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.42  E-value=1.8e-13  Score=134.15  Aligned_cols=60  Identities=15%  Similarity=0.127  Sum_probs=49.1

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHHhCC
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGV  287 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGi  287 (570)
                      ++..+.+.|++|+++++|++|..+++     ++++|++.  +|+   ++     ++.||+|||+ +|++|+...|+
T Consensus       154 l~~~a~~~gv~i~~~~~V~~i~~~~~-----~v~~V~T~--~g~---i~-----a~~VV~aaG~-~s~~l~~~~g~  213 (305)
T d1pj5a2         154 LIKRTESAGVTYRGSTTVTGIEQSGG-----RVTGVQTA--DGV---IP-----ADIVVSCAGF-WGAKIGAMIGM  213 (305)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEEETT-----EEEEEEET--TEE---EE-----CSEEEECCGG-GHHHHHHTTTC
T ss_pred             HHhhhhcccccccCCceEEEEEEeCC-----EEEEEecc--cee---EE-----CCEEEEecch-hHHHHHHHcCC
Confidence            45567778999999999999999887     89998863  553   43     7999999998 79999887654

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.36  E-value=1.8e-13  Score=130.42  Aligned_cols=37  Identities=30%  Similarity=0.516  Sum_probs=33.9

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      .+.|||||||+|++|+++|++|++ |.+|+||||++..
T Consensus         2 ~~~~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~   39 (253)
T d2gqfa1           2 SQYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKI   39 (253)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            457999999999999999999999 9999999999743

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.34  E-value=4.5e-12  Score=126.80  Aligned_cols=53  Identities=9%  Similarity=0.054  Sum_probs=38.8

Q ss_pred             CCCeEEEecceEEEEEecCCCCCCCeEEEEEEEe-cCCceEEEEecCCCCceEEEcCCccc
Q 008331          218 PEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYD-HVGARHRACLNNGGKNEIILSAGAIG  277 (570)
Q Consensus       218 ~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~-~~G~~~~v~~~~~aa~~VVLaaGa~~  277 (570)
                      ..+.+++..+.+++++....  ....+.++...+ .+|+.+.++     +|.||||+|+++
T Consensus       164 ~~~~~i~~~~~~~~l~~~~~--~~~~v~~~~~~~~~~G~~~~i~-----Ak~VILATGG~~  217 (356)
T d1jnra2         164 VGEENIYERVFIFELLKDNN--DPNAVAGAVGFSVREPKFYVFK-----AKAVILATGGAT  217 (356)
T ss_dssp             HCGGGEECSEEEEEEEECTT--CTTBEEEEEEEESSSSCEEEEE-----CSEEEECCCCBC
T ss_pred             hcceEEEEEEEEEEeeeecc--cccceeeeEEEEeecCcEEEee-----CCEEEEcCCCcc
Confidence            34567788889999887554  223777777765 468877775     699999999874

>d1kdga2 d.16.1.1 (A:513-693) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), substrate-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GMC oxidoreductases
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), substrate-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=99.33  E-value=3.9e-13  Score=120.89  Aligned_cols=90  Identities=14%  Similarity=0.154  Sum_probs=73.6

Q ss_pred             eEEEEeecc-cccccEEEEecCCCCCCCCeeecCCCCCHhHHHHHHHHHHHHHHHHcCcccccccCCCcchhHHhhhhcc
Q 008331          399 AGVIVEKIM-GPRSTGHLRLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLMVN  477 (570)
Q Consensus       399 ~~~~~~~~~-~p~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  477 (570)
                      .+++...+. .|.|||+|+|++  +.+.|.|+++|+.+|.|++.|.+++|.+++++++..+..+                
T Consensus        91 ~~~~~~~~l~~P~SRG~V~L~S--p~~~P~I~pnyLs~p~D~~~lv~~i~~~r~~~~~~p~~~~----------------  152 (181)
T d1kdga2          91 IFTITVYLSTGIQSRGRIGIDA--ALRGTVLTPPWLVNPVDKTVLLQALHDVVSNIGSIPGLTM----------------  152 (181)
T ss_dssp             EEEEEEEECTTCCCCBEEEECT--TCCEEEEECCTTCSHHHHHHHHHHHHHHTTTGGGSTTCEE----------------
T ss_pred             ceEEEEeeccCCCCCCeEEeCC--CCCCCcccccccCCHHHHHHHHHHHHHHHHHHcCCCCCcc----------------
Confidence            344444455 499999999976  4578999999999999999999999999999988654443                


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHhccccccccccc
Q 008331          478 IPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGG  511 (570)
Q Consensus       478 ~~~~~~p~~~~~~~~~i~~~~~~~~~~~~H~~GT  511 (570)
                          ..|+. .++++++.++++....+.+|+.||
T Consensus       153 ----~~p~~-~~t~~~~~~~~~~~~~~~~H~vGT  181 (181)
T d1kdga2         153 ----ITPDV-TQTLEEYVDAYDPATMNSNHWVSS  181 (181)
T ss_dssp             ----EESCT-TSCHHHHHHHSCGGGGCCSCCBCT
T ss_pred             ----ccCCC-CCCHHHHHHHHHHhCCcccCCCCC
Confidence                24555 468888999999988899999998

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=99.31  E-value=6e-12  Score=124.66  Aligned_cols=57  Identities=14%  Similarity=0.114  Sum_probs=43.8

Q ss_pred             hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEe-cCCceEEEEecCCCCceEEEcCCccc
Q 008331          212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYD-HVGARHRACLNNGGKNEIILSAGAIG  277 (570)
Q Consensus       212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~-~~G~~~~v~~~~~aa~~VVLaaGa~~  277 (570)
                      +...+.+.+++++.++.+.+++.++++    ++.|+...+ .+|+...+.     ++.||||+|++.
T Consensus       149 L~~~~~~~~v~~~~~~~~~~l~~~~~~----~~~g~~~~~~~~g~~~~~~-----a~~vIlAtGG~~  206 (330)
T d1neka2         149 LYQQNLKNHTTIFSEWYALDLVKNQDG----AVVGCTALCIETGEVVYFK-----ARATVLATGGAG  206 (330)
T ss_dssp             HHHHHHHTTCEEECSEEEEEEEECTTS----CEEEEEEEETTTCCEEEEE-----ESCEEECCCCCG
T ss_pred             HHHHHHhcCCeEEEEEEEEEeeeeccc----cceeeeeEEccCCcEEEEe-----ccEEEEcCCCcc
Confidence            344566789999999999999987664    777766554 567766664     899999999874

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.14  E-value=9.2e-11  Score=110.68  Aligned_cols=40  Identities=30%  Similarity=0.446  Sum_probs=36.8

Q ss_pred             CCCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCC
Q 008331           38 LISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYE   77 (570)
Q Consensus        38 ~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~   77 (570)
                      ++++|||||||||++|+++|++||+ |.||+||||.+..++
T Consensus         2 m~~~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~GG   42 (297)
T d2bcgg1           2 IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGG   42 (297)
T ss_dssp             CCCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCG
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCc
Confidence            5679999999999999999999999 999999999987654

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=98.94  E-value=3.4e-09  Score=102.43  Aligned_cols=55  Identities=16%  Similarity=0.148  Sum_probs=40.5

Q ss_pred             CCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHH
Q 008331          217 DPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLM  283 (570)
Q Consensus       217 ~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl  283 (570)
                      ++.|++|+++++|++|..+++     +++ |.+.+ +|+..++.     ++.||+|+++..+++||.
T Consensus       230 ~~~g~~i~~~~~V~~I~~~~~-----~~~-v~~~~-~~~~~~~~-----ad~VV~a~p~~~~~~Ll~  284 (347)
T d2ivda1         230 ASLGDAAHVGARVEGLAREDG-----GWR-LIIEE-HGRRAELS-----VAQVVLAAPAHATAKLLR  284 (347)
T ss_dssp             HHHGGGEESSEEEEEEECC-------CCE-EEEEE-TTEEEEEE-----CSEEEECSCHHHHHHHHT
T ss_pred             HHhhcccccCCEEEEEEEeCC-----eEE-EEEEc-CCeEEEEE-----CCEEEECCCHHHHHHhcc
Confidence            345789999999999998876     444 44443 56555664     799999999998998864

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.90  E-value=3.7e-09  Score=96.68  Aligned_cols=32  Identities=41%  Similarity=0.502  Sum_probs=30.5

Q ss_pred             cccEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKG   72 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G   72 (570)
                      .|||||||+|.||+.||..+|+ |+||+|||+.
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~   34 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQS   34 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEec
Confidence            5999999999999999999999 9999999965

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=98.78  E-value=7.8e-09  Score=99.84  Aligned_cols=37  Identities=27%  Similarity=0.362  Sum_probs=33.9

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      .+++||||||||++|+++|.+|.+ |.+|+|+||++..
T Consensus         5 ~~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~i   42 (298)
T d1w4xa1           5 PEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDV   42 (298)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCc
Confidence            357999999999999999999999 9999999999744

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=98.62  E-value=6.9e-08  Score=92.22  Aligned_cols=36  Identities=33%  Similarity=0.562  Sum_probs=32.7

Q ss_pred             CcccEEEECCCCchhHHHHhhhc--cCeEEEEccCCCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ--NATVLLLEKGGSP   75 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~--g~~VlvLE~G~~~   75 (570)
                      .++||||||+|++|+++|.+||+  |++|+||||.+..
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~   69 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSP   69 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCC
Confidence            47999999999999999999985  9999999998643

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.40  E-value=4.9e-08  Score=97.59  Aligned_cols=38  Identities=32%  Similarity=0.404  Sum_probs=33.7

Q ss_pred             CCcccEEEECCCCchhHHHHhhh------c-cCeEEEEccCCCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLS------Q-NATVLLLEKGGSPY   76 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La------~-g~~VlvLE~G~~~~   76 (570)
                      .++|||||||+|+||+++|++||      + |++|+||||+..+.
T Consensus        30 ~~e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG   74 (380)
T d2gmha1          30 AEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIG   74 (380)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTT
T ss_pred             cccCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCC
Confidence            45799999999999999999998      3 89999999997653

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.37  E-value=8.3e-07  Score=86.92  Aligned_cols=35  Identities=37%  Similarity=0.514  Sum_probs=30.6

Q ss_pred             cEEEECCCCchhHHHHhhhc-c--CeEEEEccCCCCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-N--ATVLLLEKGGSPYE   77 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g--~~VlvLE~G~~~~~   77 (570)
                      -|+|||||++|+++|..|++ |  .+|+|+||....++
T Consensus         6 rVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG   43 (335)
T d2gv8a1           6 KIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGG   43 (335)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSST
T ss_pred             eEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCC
Confidence            39999999999999999987 5  59999999986553

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.37  E-value=8.3e-08  Score=88.39  Aligned_cols=36  Identities=28%  Similarity=0.398  Sum_probs=33.4

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      .++||+||||||+||+++|.+|++ |+||+|||+...
T Consensus         1 ~~kYDviIIGgGpAGl~aA~~aar~G~~V~viE~~~~   37 (229)
T d3lada1           1 SQKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKG   37 (229)
T ss_dssp             CCCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBC
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecccC
Confidence            368999999999999999999999 999999998754

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.35  E-value=1e-07  Score=87.55  Aligned_cols=37  Identities=30%  Similarity=0.391  Sum_probs=34.1

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPY   76 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~   76 (570)
                      ++|||||||+|++|+.+|..|++ |+||+|||+++...
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~G   39 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALG   39 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCC
Confidence            67999999999999999999999 99999999986543

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.28  E-value=1.7e-07  Score=86.97  Aligned_cols=35  Identities=29%  Similarity=0.541  Sum_probs=32.9

Q ss_pred             cccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      +||+||||||+||+++|.+|++ |+||+|||+++..
T Consensus         3 dYDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~   38 (235)
T d1h6va1           3 DFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPT   38 (235)
T ss_dssp             SEEEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence            7999999999999999999999 9999999998753

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.27  E-value=1.6e-07  Score=86.01  Aligned_cols=34  Identities=29%  Similarity=0.537  Sum_probs=32.1

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      ++||+||||||++|+.+|.+|++ |+||+|+|++.
T Consensus         1 k~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~   35 (217)
T d1gesa1           1 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAKE   35 (217)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeccC
Confidence            47999999999999999999999 99999999974

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.26  E-value=1.2e-07  Score=87.70  Aligned_cols=38  Identities=29%  Similarity=0.406  Sum_probs=34.4

Q ss_pred             CCCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           38 LISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        38 ~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      ++++|||||||+|+||+.+|..|++ |+||+|+|+.+..
T Consensus         2 m~~~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~   40 (233)
T d1v59a1           2 INKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKL   40 (233)
T ss_dssp             EEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             CCcccCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCc
Confidence            3578999999999999999999999 9999999987543

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.23  E-value=2.1e-07  Score=89.76  Aligned_cols=37  Identities=46%  Similarity=0.636  Sum_probs=34.3

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYEN   78 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~~   78 (570)
                      |||||||||++|+++|.+|++ |.+|+|+|+.+..++.
T Consensus         2 ~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG~   39 (298)
T d1i8ta1           2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGN   39 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGG
T ss_pred             ccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcccc
Confidence            799999999999999999999 9999999998877653

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.23  E-value=1.9e-07  Score=86.29  Aligned_cols=37  Identities=24%  Similarity=0.430  Sum_probs=33.9

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      +.+||+||||+|+||+++|..|++ |++|+|+|+.+..
T Consensus         4 ~~dyDviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~   41 (229)
T d1ojta1           4 DAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTL   41 (229)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCS
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence            457999999999999999999999 9999999998643

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=4.3e-07  Score=88.90  Aligned_cols=40  Identities=30%  Similarity=0.275  Sum_probs=36.1

Q ss_pred             CCCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCC
Q 008331           38 LISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYE   77 (570)
Q Consensus        38 ~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~   77 (570)
                      ..++.+|||||||.+|+++|++|++ |++|+|||+.+..++
T Consensus         2 ~~~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GG   42 (449)
T d2dw4a2           2 TKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG   42 (449)
T ss_dssp             SSCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBT
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCcc
Confidence            4567789999999999999999999 999999999987654

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.15  E-value=3.6e-07  Score=83.71  Aligned_cols=34  Identities=29%  Similarity=0.450  Sum_probs=32.1

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      .+||+||||+|++|+.+|..|++ |+||+|||++.
T Consensus         2 ~~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~   36 (223)
T d1ebda1           2 IETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN   36 (223)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCEEEEEecCC
Confidence            37999999999999999999999 99999999985

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=4.7e-07  Score=82.90  Aligned_cols=33  Identities=30%  Similarity=0.626  Sum_probs=31.6

Q ss_pred             cccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      +||+||||+|++|+.+|.+|++ |++|+|||++.
T Consensus         3 ~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk~~   36 (221)
T d3grsa1           3 SYDYLVIGGGSGGLASARRAAELGARAAVVESHK   36 (221)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCEEEEEeccC
Confidence            6999999999999999999999 99999999875

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.11  E-value=5.5e-07  Score=82.45  Aligned_cols=36  Identities=25%  Similarity=0.356  Sum_probs=33.4

Q ss_pred             CCCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           38 LISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        38 ~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      .+.+||+||||+|++|+.+|.+|++ |++|+|+|++.
T Consensus         2 ~~~~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~   38 (220)
T d1lvla1           2 QTIQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQA   38 (220)
T ss_dssp             CCEECSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             CccccCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            3568999999999999999999999 99999999875

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.08  E-value=6.1e-07  Score=79.54  Aligned_cols=32  Identities=28%  Similarity=0.436  Sum_probs=30.3

Q ss_pred             cccEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKG   72 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G   72 (570)
                      .|||||||||++|+.+|..|++ |++|+|||+.
T Consensus         1 ~yDViIIGgGpaGl~AAi~aar~G~~v~iie~~   33 (184)
T d1fl2a1           1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGER   33 (184)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence            4999999999999999999999 9999999974

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=7.7e-07  Score=87.38  Aligned_cols=35  Identities=34%  Similarity=0.487  Sum_probs=32.6

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYE   77 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~   77 (570)
                      ||||||||++|+++|++|++ |++|+||||.+..++
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~GG   36 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGG   36 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSSBT
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcc
Confidence            89999999999999999999 999999999886654

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.03  E-value=1.1e-05  Score=75.31  Aligned_cols=32  Identities=28%  Similarity=0.378  Sum_probs=30.0

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      .|+|||+|++|+++|..|++ |++|+||||.+.
T Consensus         6 kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~   38 (265)
T d2voua1           6 RIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ   38 (265)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             cEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            59999999999999999999 999999999753

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.02  E-value=9.7e-07  Score=82.88  Aligned_cols=36  Identities=33%  Similarity=0.395  Sum_probs=32.2

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cC-eEEEEccCCCCCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NA-TVLLLEKGGSPYE   77 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~-~VlvLE~G~~~~~   77 (570)
                      .||||||||++|+++|++|++ |. +|+||||.+...+
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~~GG   38 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGG   38 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBT
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCCCCc
Confidence            489999999999999999999 96 6999999876543

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.01  E-value=1e-06  Score=82.80  Aligned_cols=32  Identities=44%  Similarity=0.757  Sum_probs=30.8

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      ||+||||||++|+.+|.+|++ |+||+|+|++.
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE~~~   34 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHNAKVALVEKSR   34 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            899999999999999999999 99999999874

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=97.95  E-value=1.9e-06  Score=83.86  Aligned_cols=40  Identities=28%  Similarity=0.319  Sum_probs=35.2

Q ss_pred             CCCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCC
Q 008331           38 LISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYE   77 (570)
Q Consensus        38 ~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~   77 (570)
                      ..+..+|+|||||++|+++|++|++ |++|+|||+.+..++
T Consensus        27 ~~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~GG   67 (370)
T d2iida1          27 TSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGG   67 (370)
T ss_dssp             CSSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBT
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCC
Confidence            3455689999999999999999999 999999999887654

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=97.94  E-value=3.6e-06  Score=73.80  Aligned_cols=58  Identities=16%  Similarity=0.229  Sum_probs=42.4

Q ss_pred             hhhccccCCcceeeecccCCCCCCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCC
Q 008331           17 GFCFAEKAPYYTFVKDATSAPLISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPY   76 (570)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~   76 (570)
                      ..|+.++..+.++-  ....+......|+|||||+||+.+|..|++ |++|.|+|+.+...
T Consensus        21 ~~C~~Np~~g~e~~--~~~~~~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~G   79 (179)
T d1ps9a3          21 TSCLVNPRACHETK--MPILPAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIG   79 (179)
T ss_dssp             CCCSSCTTTTCTTT--SCCCSCSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSC
T ss_pred             eEEeeCccccCccc--cccCCCCCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccC
Confidence            34666664443221  122233456789999999999999999999 99999999997654

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=97.94  E-value=3.2e-06  Score=78.92  Aligned_cols=36  Identities=22%  Similarity=0.298  Sum_probs=32.6

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      +...+|||||+|++|+++|++|++ |.+|+||||+..
T Consensus         4 ~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~~   40 (268)
T d1c0pa1           4 HSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLP   40 (268)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred             CCCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            445689999999999999999999 999999999764

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=97.92  E-value=2.4e-06  Score=81.96  Aligned_cols=35  Identities=26%  Similarity=0.352  Sum_probs=32.3

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYE   77 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~   77 (570)
                      .|||||||++|+++|++|++ |++|+||||++..++
T Consensus         3 kV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG   38 (373)
T d1seza1           3 RVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGG   38 (373)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCCcC
Confidence            39999999999999999999 999999999887654

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.87  E-value=2.4e-06  Score=79.13  Aligned_cols=36  Identities=17%  Similarity=0.370  Sum_probs=32.1

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cC-eEEEEccCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NA-TVLLLEKGGS   74 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~-~VlvLE~G~~   74 (570)
                      +++||+||||+|+||+++|.++++ |. +|+|+|+...
T Consensus         1 ~k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~   38 (240)
T d1feca1           1 SRAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKH   38 (240)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSS
T ss_pred             CCccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEecc
Confidence            368999999999999999999999 85 6999998764

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=97.85  E-value=4.6e-06  Score=78.34  Aligned_cols=39  Identities=26%  Similarity=0.261  Sum_probs=35.2

Q ss_pred             CCCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCC
Q 008331           38 LISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPY   76 (570)
Q Consensus        38 ~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~   76 (570)
                      ..++||+||||+|++|+.+|..|++ |.+|+|+|+++...
T Consensus        39 ~~k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lG   78 (261)
T d1mo9a1          39 DPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLG   78 (261)
T ss_dssp             CCSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSS
T ss_pred             CCccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCccc
Confidence            4578999999999999999999999 99999999987543

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=97.80  E-value=2.9e-06  Score=75.53  Aligned_cols=36  Identities=19%  Similarity=0.282  Sum_probs=32.8

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      ++..||+|||+|++|+.+|..|++ |++|+|||+...
T Consensus         3 ~k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~   39 (190)
T d1trba1           3 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEK   39 (190)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSST
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecc
Confidence            456799999999999999999999 999999998754

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=97.78  E-value=0.00012  Score=58.94  Aligned_cols=32  Identities=25%  Similarity=0.348  Sum_probs=29.8

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      -++|||+|+.|+-+|..|++ |.+|.|+|+++.
T Consensus        23 ~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~   55 (116)
T d1gesa2          23 RVAVVGAGYIGVELGGVINGLGAKTHLFEMFDA   55 (116)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             EEEEECCChhhHHHHHHhhccccEEEEEeecch
Confidence            49999999999999999999 999999999863

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.78  E-value=4.9e-06  Score=79.31  Aligned_cols=33  Identities=27%  Similarity=0.399  Sum_probs=31.3

Q ss_pred             cccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      ++||+|||+|++|+++|..|++ |++|+||||.+
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~   35 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT   35 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            5799999999999999999999 99999999975

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=97.76  E-value=5.4e-06  Score=80.11  Aligned_cols=35  Identities=23%  Similarity=0.391  Sum_probs=32.8

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYE   77 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~   77 (570)
                      -|+|||||++|+++|++|++ |.+|+|+||.+..++
T Consensus         4 KI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG   39 (314)
T d2bi7a1           4 KILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGG   39 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSG
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcC
Confidence            48999999999999999999 999999999988765

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=97.76  E-value=7.9e-05  Score=60.58  Aligned_cols=32  Identities=13%  Similarity=0.342  Sum_probs=29.8

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      -++|||+|+.|+-+|..|+. |.+|.++|+++.
T Consensus        24 ~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~   56 (121)
T d1mo9a2          24 TVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEP   56 (121)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             EEEEECCCHHHHHHHHHHHhcchhheEeeccch
Confidence            59999999999999999999 999999998863

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.71  E-value=3.9e-06  Score=74.87  Aligned_cols=35  Identities=23%  Similarity=0.198  Sum_probs=32.3

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      ..+||+|||||++|+.+|..|++ |++|+|+|+...
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~   39 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMA   39 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSB
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecc
Confidence            46899999999999999999999 999999998764

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.71  E-value=7.4e-06  Score=75.33  Aligned_cols=34  Identities=18%  Similarity=0.374  Sum_probs=30.7

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-cC-eEEEEccCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-NA-TVLLLEKGG   73 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g~-~VlvLE~G~   73 (570)
                      +.||+||||+|+||+++|.+||+ |. +|+|+|+..
T Consensus         2 ~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~   37 (238)
T d1aoga1           2 KIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQM   37 (238)
T ss_dssp             CSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeec
Confidence            57999999999999999999999 75 699999864

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.71  E-value=8.5e-06  Score=76.83  Aligned_cols=34  Identities=35%  Similarity=0.471  Sum_probs=31.1

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cC-eEEEEccCCCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NA-TVLLLEKGGSP   75 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~-~VlvLE~G~~~   75 (570)
                      +||+|||||++|+++|..|++ |. +|+|+||.+..
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~   37 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEI   37 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence            699999999999999999999 96 89999998643

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.70  E-value=0.00013  Score=60.33  Aligned_cols=33  Identities=33%  Similarity=0.530  Sum_probs=30.7

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      -.++|||+|+.|+-+|..|++ |.+|.|+|+++.
T Consensus        36 k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~   69 (133)
T d1q1ra2          36 NRLVVIGGGYIGLEVAATAIKANMHVTLLDTAAR   69 (133)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CEEEEECCchHHHHHHHHHHhhCcceeeeeeccc
Confidence            469999999999999999999 999999999864

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=97.69  E-value=9.2e-06  Score=79.48  Aligned_cols=36  Identities=36%  Similarity=0.587  Sum_probs=32.0

Q ss_pred             CcccEEEECCCCchhHHHHhhh-----c-cCeEEEEccCCCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLS-----Q-NATVLLLEKGGSP   75 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La-----~-g~~VlvLE~G~~~   75 (570)
                      ..|||||||||++|+++|..|+     + |++|+||||.+..
T Consensus         6 ~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~   47 (360)
T d1pn0a1           6 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK   47 (360)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCC
Confidence            3599999999999999999996     4 8999999998644

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.66  E-value=0.00015  Score=58.68  Aligned_cols=33  Identities=24%  Similarity=0.332  Sum_probs=30.4

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      -.++|||+|+.|+-+|..|++ |.+|.|+|+.+.
T Consensus        23 ~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~   56 (119)
T d3lada2          23 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDK   56 (119)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CeEEEECCChHHHHHHHHHHHcCCceEEEEeecc
Confidence            369999999999999999999 999999998864

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.64  E-value=1.4e-05  Score=73.41  Aligned_cols=58  Identities=21%  Similarity=0.206  Sum_probs=42.3

Q ss_pred             hccccCCcceeeecccC---CCCCCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCC
Q 008331           19 CFAEKAPYYTFVKDATS---APLISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPY   76 (570)
Q Consensus        19 ~~~~~~~~~~~~~~~~~---~~~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~   76 (570)
                      |..++..+.++......   .......+|+|||||++|+.+|..|++ |++|.|+|+.+...
T Consensus        24 c~~n~~~~~e~~~~~~p~~~~~~~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~G   85 (233)
T d1djqa3          24 CTQNATAGEEYRRGWHPEKFRQTKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIG   85 (233)
T ss_dssp             CSSCTTTTTHHHHCCCSSCCCCCSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTT
T ss_pred             eecCcccChHHhcCCCCCccCcccCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccC
Confidence            55555444444332221   123456799999999999999999999 99999999997654

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=97.60  E-value=6.7e-05  Score=61.35  Aligned_cols=32  Identities=22%  Similarity=0.422  Sum_probs=30.0

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      .++|||+|+.|+=+|..+++ |.+|.|+|+++.
T Consensus        28 ~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~   60 (125)
T d1ojta2          28 KLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDG   60 (125)
T ss_dssp             EEEEESCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             eEEEECCCHHHHHHHHHhhcCCCEEEEEEeecc
Confidence            59999999999999999999 999999999863

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.60  E-value=1.4e-05  Score=76.95  Aligned_cols=38  Identities=32%  Similarity=0.488  Sum_probs=33.7

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc---cCeEEEEccCCCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ---NATVLLLEKGGSPY   76 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~---g~~VlvLE~G~~~~   76 (570)
                      ..++||+|||+|++|+++|+.|++   |++|+|+|+.+...
T Consensus        48 ~~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~   88 (311)
T d2gjca1          48 FAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPG   88 (311)
T ss_dssp             TTEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCC
T ss_pred             ccCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCc
Confidence            447899999999999999999995   89999999987654

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.54  E-value=0.00049  Score=55.75  Aligned_cols=32  Identities=25%  Similarity=0.433  Sum_probs=30.0

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      -++|||+|+.|+-+|..|++ |.+|.|+|+.+.
T Consensus        25 ~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~   57 (122)
T d1v59a2          25 RLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQ   57 (122)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             eEEEECCCchHHHHHHHHHhhCcceeEEEeccc
Confidence            59999999999999999999 999999998864

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.48  E-value=0.00023  Score=57.86  Aligned_cols=32  Identities=16%  Similarity=0.402  Sum_probs=30.1

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      .++|||+|..|+-+|..+++ |.+|.|+|+++.
T Consensus        27 ~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~   59 (123)
T d1dxla2          27 KLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASE   59 (123)
T ss_dssp             EEEESCCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             eEEEEccchHHHHHHHHHHhcCCeEEEEEEccc
Confidence            58999999999999999999 999999999864

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.47  E-value=2.7e-05  Score=69.07  Aligned_cols=34  Identities=18%  Similarity=0.278  Sum_probs=30.5

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCe-EEEEccCCCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NAT-VLLLEKGGSPY   76 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~-VlvLE~G~~~~   76 (570)
                      -|+|||||++|+.+|..|++ |++ |.|+||.+...
T Consensus         6 kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~g   41 (196)
T d1gtea4           6 KIALLGAGPASISCASFLARLGYSDITIFEKQEYVG   41 (196)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCS
T ss_pred             EEEEECChHHHHHHHHHHHHCCCCeEEEEEecCccc
Confidence            49999999999999999999 985 99999997643

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.32  E-value=4.2e-05  Score=70.07  Aligned_cols=36  Identities=36%  Similarity=0.402  Sum_probs=31.9

Q ss_pred             cccEEEECCCCchhHHHHhhhc-c-------CeEEEEccCCCCC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ-N-------ATVLLLEKGGSPY   76 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~-g-------~~VlvLE~G~~~~   76 (570)
                      .+.|.|||||+||+++|+.|++ |       .+|.|+||.+...
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~G   45 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPW   45 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCS
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCC
Confidence            4689999999999999999998 7       5899999997654

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.26  E-value=0.0016  Score=52.62  Aligned_cols=30  Identities=17%  Similarity=0.239  Sum_probs=28.2

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKG   72 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G   72 (570)
                      .++|||+|+.|+-.|..|++ |.+|.|+|+.
T Consensus        22 ~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          22 KTLVVGASYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             eEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence            49999999999999999999 9999999964

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.23  E-value=0.0016  Score=52.14  Aligned_cols=32  Identities=25%  Similarity=0.344  Sum_probs=27.0

Q ss_pred             cEEEECCCCchhHHHHhhh---c-cCeEEEEccCCC
Q 008331           43 DYIIVGGGTSGCPLAATLS---Q-NATVLLLEKGGS   74 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La---~-g~~VlvLE~G~~   74 (570)
                      .++|||+|+.|+-+|..|+   . |.+|.|+|+++.
T Consensus        20 ~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~   55 (117)
T d1feca2          20 RALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDM   55 (117)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSS
T ss_pred             eEEEECCChHHHHHHHHhHhhcccccccceeccccc
Confidence            5999999999999987654   4 789999998863

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.14  E-value=0.00012  Score=66.74  Aligned_cols=34  Identities=32%  Similarity=0.440  Sum_probs=29.9

Q ss_pred             cEEEECCCCchhHHHHhhhc---cCeEEEEccCCCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ---NATVLLLEKGGSPY   76 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~---g~~VlvLE~G~~~~   76 (570)
                      -|+|||||+||+++|..|++   |.+|.|+|+.+.+.
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~g   39 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPF   39 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSC
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCC
Confidence            58999999999999999975   67999999997543

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.0019  Score=53.31  Aligned_cols=32  Identities=31%  Similarity=0.451  Sum_probs=27.7

Q ss_pred             cEEEECCCCchhHHHHhhh----c-cCeEEEEccCCC
Q 008331           43 DYIIVGGGTSGCPLAATLS----Q-NATVLLLEKGGS   74 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La----~-g~~VlvLE~G~~   74 (570)
                      .++|||+|+.|+-+|..|+    + |.+|.++|+++.
T Consensus        39 ~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~   75 (137)
T d1m6ia2          39 SITIIGGGFLGSELACALGRKARALGTEVIQLFPEKG   75 (137)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhcCCEEEEeccccc
Confidence            5999999999999998886    3 789999998753

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.83  E-value=0.00022  Score=65.19  Aligned_cols=32  Identities=25%  Similarity=0.497  Sum_probs=28.1

Q ss_pred             ccEEEECCCCchhHHHHhhhc-c---CeEEEEccCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-N---ATVLLLEKGG   73 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g---~~VlvLE~G~   73 (570)
                      .+|||||+|+||+.+|.++++ |   ++|+|+|++.
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~   37 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG   37 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCC
Confidence            379999999999999999887 5   6899999864

>d2f5va2 d.16.1.1 (A:355-552) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GMC oxidoreductases
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=96.68  E-value=0.0016  Score=57.16  Aligned_cols=60  Identities=13%  Similarity=0.110  Sum_probs=46.2

Q ss_pred             eeeEEEEeecccccccEEEEecC--CCCCCCCeeecCCCCCHhHHHHHHH-HHHHHHHHHcCccc
Q 008331          397 IRAGVIVEKIMGPRSTGHLRLRT--LDADDNPSVTFNYFQEPEDLVRCVQ-GMRTIIDVLNSRAL  458 (570)
Q Consensus       397 ~~~~~~~~~~~~p~s~g~v~l~~--~d~~~~p~i~~~~~~~~~D~~~~~~-~~~~~~~i~~~~~~  458 (570)
                      ..+..+.+.+  |..+|+|+|++  +|.++.|.++++|..+++|.+++.. +.+.+.+++.+.+.
T Consensus       115 v~l~~~ge~~--P~~~Nrv~l~~~~~D~~GiP~~~~~~~~~~ne~~~~~~~m~~~~~~~~~a~Gg  177 (198)
T d2f5va2         115 VDWRFFGRTE--PKEENKLWFSDKITDAYNMPQPTFDFRFPAGRTSKEAEDMMTDMCVMSAKIGG  177 (198)
T ss_dssp             EEEEEEECCC--CCTTCEEEEEEEEECTTSSEEEEEECCCCTTHHHHHHHHHHHHHHHHHTTTEE
T ss_pred             EEEEEEeccc--CCCCCEEEeCCCCcCCCCCCeeEEEEecCccHHHHHHHHHHHHHHHHHHHcCC
Confidence            3344566666  66688899974  6999999999999999999888776 45677888877653

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.61  E-value=0.00057  Score=54.90  Aligned_cols=33  Identities=27%  Similarity=0.562  Sum_probs=31.0

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      .++|||+|+.|+-+|..|++ |.+|.|+|+++..
T Consensus        24 ~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~i   57 (117)
T d1ebda2          24 SLVVIGGGYIGIELGTAYANFGTKVTILEGAGEI   57 (117)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             eEEEECCCccceeeeeeecccccEEEEEEeccee
Confidence            69999999999999999999 9999999999754

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.58  E-value=0.00011  Score=67.19  Aligned_cols=30  Identities=20%  Similarity=0.284  Sum_probs=27.7

Q ss_pred             EEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           44 YIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        44 vIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      |+|||||.+|+++|+.|++ |.+|+++|+..
T Consensus         3 V~VIGaGi~GlstA~~L~~~G~~v~v~e~~~   33 (246)
T d1kifa1           3 VVVIGAGVIGLSTALCIHERYHSVLQPLDVK   33 (246)
T ss_dssp             EEEECCSHHHHHHHHHHHHHHTTTSSSCEEE
T ss_pred             EEEECchHHHHHHHHHHHHCCCCceEEeeee
Confidence            8999999999999999999 99988888754

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.44  E-value=0.00073  Score=54.69  Aligned_cols=33  Identities=36%  Similarity=0.578  Sum_probs=30.8

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      +++|||+|+.|+-+|..|++ |.+|.|+|+++..
T Consensus        34 ~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l   67 (122)
T d1xhca2          34 EAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMF   67 (122)
T ss_dssp             EEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCC
T ss_pred             cEEEECCcHHHHHHHHHhhcccceEEEEeccccc
Confidence            69999999999999999999 9999999998754

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.34  E-value=0.0011  Score=53.56  Aligned_cols=34  Identities=38%  Similarity=0.456  Sum_probs=31.4

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      -.++|||+|+.|+-+|..|++ |.+|.|+|+++..
T Consensus        31 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~   65 (121)
T d1d7ya2          31 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPRL   65 (121)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             CeEEEECcchhHHHHHHHhhcccceEEEEeecccc
Confidence            469999999999999999999 9999999999754

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.34  E-value=0.0011  Score=52.97  Aligned_cols=33  Identities=27%  Similarity=0.431  Sum_probs=30.9

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      .++|||+|+.|+-+|..|++ |.+|.|+|+++..
T Consensus        23 ~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~i   56 (115)
T d1lvla2          23 HLVVVGGGYIGLELGIAYRKLGAQVSVVEARERI   56 (115)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHhhcccceEEEeeeccc
Confidence            59999999999999999999 9999999999754

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.29  E-value=0.0013  Score=52.72  Aligned_cols=33  Identities=18%  Similarity=0.307  Sum_probs=30.7

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      -++|||+|+.|+-+|..|++ |.+|.|+|+++..
T Consensus        24 ~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~i   57 (117)
T d1onfa2          24 KIGIVGSGYIAVELINVIKRLGIDSYIFARGNRI   57 (117)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSS
T ss_pred             EEEEECCchHHHHHHHHHHhccccceeeehhccc
Confidence            59999999999999999999 9999999999754

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.22  E-value=0.0013  Score=53.11  Aligned_cols=33  Identities=18%  Similarity=0.427  Sum_probs=30.8

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      .++|||+|+.|+-+|..|++ |.+|.|+|+.+..
T Consensus        32 ~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~   65 (123)
T d1nhpa2          32 NVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRP   65 (123)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             EEEEECChHHHHHHHHHhhccceEEEEEEecCcc
Confidence            69999999999999999999 9999999998753

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.93  E-value=0.0022  Score=51.90  Aligned_cols=33  Identities=24%  Similarity=0.332  Sum_probs=30.8

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      .++|||+|+.|+-+|..|++ |.+|.|+|+++..
T Consensus        24 ~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~   57 (125)
T d3grsa2          24 RSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKV   57 (125)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             EEEEEcCCccHHHHHHHHhcCCcEEEEEeecccc
Confidence            59999999999999999999 9999999999754

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.89  E-value=0.0023  Score=63.88  Aligned_cols=41  Identities=27%  Similarity=0.266  Sum_probs=37.7

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCCCC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYENP   79 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~~~   79 (570)
                      .++|||||+|.|..=+++|..|+. |.|||-||+..++++..
T Consensus         4 P~e~DVII~GTGL~ESILAaAlSr~GkkVLHiD~N~yYGg~~   45 (491)
T d1vg0a1           4 PSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNW   45 (491)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGG
T ss_pred             CCccCEEEECCChHHHHHHHHHHhcCCEEEEecCCCcCCCcc
Confidence            568999999999999999999999 99999999999887643

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=95.79  E-value=0.0024  Score=54.82  Aligned_cols=32  Identities=31%  Similarity=0.543  Sum_probs=28.5

Q ss_pred             cEEEECCCCchhHHHHhhhc-c--CeEEEEccCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-N--ATVLLLEKGGS   74 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g--~~VlvLE~G~~   74 (570)
                      -|||||+|++|+.+|.+|.+ +  .+|.|+|+.+.
T Consensus         4 rivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~   38 (186)
T d1fcda1           4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTD   38 (186)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSC
T ss_pred             cEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCc
Confidence            48999999999999999999 6  68999998763

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.61  E-value=0.0033  Score=56.03  Aligned_cols=36  Identities=25%  Similarity=0.502  Sum_probs=31.0

Q ss_pred             CcccEEEECCCCchhHHHHhhhc-c--CeEEEEccCCCC
Q 008331           40 SYYDYIIVGGGTSGCPLAATLSQ-N--ATVLLLEKGGSP   75 (570)
Q Consensus        40 ~~~DvIIVGsG~aG~~~A~~La~-g--~~VlvLE~G~~~   75 (570)
                      ..+++||||+|++|+.+|.+|.+ +  .+|+|+++.+..
T Consensus         3 ~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~   41 (213)
T d1m6ia1           3 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPEL   41 (213)
T ss_dssp             SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCC
Confidence            46899999999999999999988 5  679999887643

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.42  E-value=0.0045  Score=52.52  Aligned_cols=31  Identities=39%  Similarity=0.550  Sum_probs=28.4

Q ss_pred             EEEECCCCchhHHHHhhhccCeEEEEccCCC
Q 008331           44 YIIVGGGTSGCPLAATLSQNATVLLLEKGGS   74 (570)
Q Consensus        44 vIIVGsG~aG~~~A~~La~g~~VlvLE~G~~   74 (570)
                      ++|||+|++|+-+|..|+++.+|.|+|+.+.
T Consensus         3 VvIIGgG~~G~e~A~~l~~~~~Vtvv~~~~~   33 (167)
T d1xhca1           3 VVIVGNGPGGFELAKQLSQTYEVTVIDKEPV   33 (167)
T ss_dssp             EEEECCSHHHHHHHHHHTTTSEEEEECSSSS
T ss_pred             EEEECCcHHHHHHHHHHHcCCCEEEEecccc
Confidence            8999999999999999988779999998764

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=95.38  E-value=0.0029  Score=54.63  Aligned_cols=32  Identities=25%  Similarity=0.296  Sum_probs=28.9

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      ||||||||++|+-+|..|++ |.+|.|+|+.+.
T Consensus         5 ~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~   37 (185)
T d1q1ra1           5 NVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDA   37 (185)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CEEEECCcHHHHHHHHHHHHcCCceEEEEecCc
Confidence            79999999999999999999 988888887764

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=95.25  E-value=0.12  Score=41.18  Aligned_cols=46  Identities=17%  Similarity=0.256  Sum_probs=37.9

Q ss_pred             CCeEEEecceEEEEEecCCCCCCCeEEEEEEEec-CCceEEEEecCCCCceEEEcCC
Q 008331          219 EKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDH-VGARHRACLNNGGKNEIILSAG  274 (570)
Q Consensus       219 ~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~-~G~~~~v~~~~~aa~~VVLaaG  274 (570)
                      +|++++++++|..|.-+++     ++++|++++. +|+..++.     .+.|+++-|
T Consensus        79 ~~I~v~~~~~v~~i~G~~~-----~v~~v~l~~~~tge~~~l~-----vdgvFv~IG  125 (126)
T d1fl2a2          79 KNVDIILNAQTTEVKGDGS-----KVVGLEYRDRVSGDIHNIE-----LAGIFVQIG  125 (126)
T ss_dssp             TTEEEESSEEEEEEEESSS-----SEEEEEEEETTTCCEEEEE-----CSEEEECSC
T ss_pred             cceeEEcCcceEEEEcccc-----ceeeEEEEECCCCCEEEEE-----CCEEEEEeC
Confidence            5899999999999988765     7999999874 57777774     688888766

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.86  E-value=0.0072  Score=52.89  Aligned_cols=32  Identities=25%  Similarity=0.363  Sum_probs=28.5

Q ss_pred             EEEECCCCchhHHHHhhhc-c--CeEEEEccCCCC
Q 008331           44 YIIVGGGTSGCPLAATLSQ-N--ATVLLLEKGGSP   75 (570)
Q Consensus        44 vIIVGsG~aG~~~A~~La~-g--~~VlvLE~G~~~   75 (570)
                      |+|||+|.+|+.+|..|++ +  .+|.|+|+++..
T Consensus         3 VvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~   37 (198)
T d1nhpa1           3 VIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFI   37 (198)
T ss_dssp             EEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSS
T ss_pred             EEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcc
Confidence            8999999999999999998 4  689999998643

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=94.62  E-value=0.012  Score=50.33  Aligned_cols=30  Identities=17%  Similarity=0.234  Sum_probs=28.5

Q ss_pred             EEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           44 YIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        44 vIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      |+|||+|..|..+|..|++ |.+|.|++|..
T Consensus         5 IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~   35 (182)
T d1e5qa1           5 VLMLGSGFVTRPTLDVLTDSGIKVTVACRTL   35 (182)
T ss_dssp             EEEECCSTTHHHHHHHHHTTTCEEEEEESCH
T ss_pred             EEEECCCHHHHHHHHHHHhCCCEEEEEECCh
Confidence            8999999999999999999 99999999875

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=94.41  E-value=0.0068  Score=52.31  Aligned_cols=32  Identities=22%  Similarity=0.342  Sum_probs=27.7

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      ..|||||+|++|+-+|..|++ |.+|.|++.++
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~   36 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQAGYQGLITVVGD   36 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHHTCCSCEEEEES
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCceEEEEEec
Confidence            359999999999999999999 98877777664

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=94.06  E-value=0.014  Score=46.22  Aligned_cols=33  Identities=24%  Similarity=0.365  Sum_probs=28.0

Q ss_pred             cEEEECCCCchhHHHHhhhc----cCeEEEEccCCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ----NATVLLLEKGGSP   75 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~----g~~VlvLE~G~~~   75 (570)
                      .++|||+|+.|+-+|..|+.    +.+|.|+|+++..
T Consensus        22 ~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~i   58 (117)
T d1aoga2          22 RVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMI   58 (117)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSS
T ss_pred             eEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchh
Confidence            69999999999999977665    4679999998754

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=93.28  E-value=0.018  Score=49.33  Aligned_cols=30  Identities=30%  Similarity=0.490  Sum_probs=28.3

Q ss_pred             EEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           44 YIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        44 vIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      +.|||+|..|+.+|..|++ |.+|.++++.+
T Consensus         4 iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~   34 (184)
T d1bg6a2           4 YAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   34 (184)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            7899999999999999999 99999999864

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=93.22  E-value=0.025  Score=47.54  Aligned_cols=31  Identities=16%  Similarity=0.126  Sum_probs=28.9

Q ss_pred             EEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           44 YIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        44 vIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      |.|||+|..|+..|..|++ |.+|.++.|...
T Consensus         3 I~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~   34 (167)
T d1ks9a2           3 ITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (167)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             EEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence            7899999999999999999 999999998753

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.68  E-value=0.03  Score=45.22  Aligned_cols=30  Identities=33%  Similarity=0.527  Sum_probs=28.2

Q ss_pred             EEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           44 YIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        44 vIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      |||+|+|.-|..+|..|.+ |.+|+++|+.+
T Consensus         3 IvI~G~G~~G~~la~~L~~~g~~v~vid~d~   33 (132)
T d1lssa_           3 IIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   33 (132)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCcceecCCh
Confidence            7999999999999999999 99999999864

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=92.22  E-value=0.04  Score=41.47  Aligned_cols=32  Identities=16%  Similarity=0.262  Sum_probs=29.0

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      -|+|+|.|.+|.++|..|++ |.+|.+.|....
T Consensus         7 ~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~   39 (93)
T d2jfga1           7 NVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT   39 (93)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred             EEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence            38999999999999999999 999999997653

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=91.85  E-value=0.034  Score=44.98  Aligned_cols=31  Identities=19%  Similarity=0.406  Sum_probs=28.8

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      .|||||.|-.|..+|..|.+ |.+|+++|+.+
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~   33 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   33 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEecCcH
Confidence            38999999999999999999 99999999764

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=91.66  E-value=0.068  Score=44.35  Aligned_cols=33  Identities=15%  Similarity=0.074  Sum_probs=28.7

Q ss_pred             cEEEE--CCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           43 DYIIV--GGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        43 DvIIV--GsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      .+|||  |+|..|+-+|..|++ |.+|.|+|+.+..
T Consensus        41 ~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~   76 (156)
T d1djqa2          41 RVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLA   76 (156)
T ss_dssp             EEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTT
T ss_pred             ceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCcc
Confidence            45655  999999999999999 9999999988643

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.15  E-value=0.14  Score=44.57  Aligned_cols=29  Identities=28%  Similarity=0.280  Sum_probs=27.3

Q ss_pred             EEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331           44 YIIVGGGTSGCPLAATLSQ-NATVLLLEKG   72 (570)
Q Consensus        44 vIIVGsG~aG~~~A~~La~-g~~VlvLE~G   72 (570)
                      +.|||.|..|+++|..||+ |.+|..+|..
T Consensus         3 I~ViGlG~vGl~~a~~la~~g~~V~g~D~n   32 (202)
T d1mv8a2           3 ISIFGLGYVGAVCAGCLSARGHEVIGVDVS   32 (202)
T ss_dssp             EEEECCSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEECCCHhHHHHHHHHHhCCCcEEEEeCC
Confidence            7899999999999999999 9999999965

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=88.96  E-value=0.087  Score=40.65  Aligned_cols=31  Identities=19%  Similarity=0.238  Sum_probs=26.2

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKG   72 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G   72 (570)
                      -+|+|||+|.+|+-+|..|++ ..+|+++-+-
T Consensus        33 K~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r   64 (107)
T d2gv8a2          33 ESVLVVGGASSANDLVRHLTPVAKHPIYQSLL   64 (107)
T ss_dssp             CCEEEECSSHHHHHHHHHHTTTSCSSEEEECT
T ss_pred             CeEEEECCCCCHHHHHHHHHHhcCEEEEEEec
Confidence            379999999999999999999 7776666544

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.88  E-value=0.11  Score=44.84  Aligned_cols=30  Identities=27%  Similarity=0.525  Sum_probs=27.9

Q ss_pred             EEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           44 YIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        44 vIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      |.|||+|..|...|..++. |++|.++|+.+
T Consensus         7 vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (192)
T d1f0ya2           7 VTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   37 (192)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEECcCHHHHHHHHHHHhCCCcEEEEECCh
Confidence            8899999999999999999 99999999664

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=88.61  E-value=0.16  Score=42.25  Aligned_cols=34  Identities=24%  Similarity=0.356  Sum_probs=30.6

Q ss_pred             CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331           39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKG   72 (570)
Q Consensus        39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G   72 (570)
                      -....|+|||+|.+|+.++..+.. |..|.++|..
T Consensus        30 v~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~   64 (168)
T d1pjca1          30 VKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDIN   64 (168)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCc
Confidence            445679999999999999999999 9999999965

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=88.19  E-value=0.15  Score=43.17  Aligned_cols=33  Identities=21%  Similarity=0.259  Sum_probs=29.9

Q ss_pred             cccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      ...|+|+|+|.+|+.+|..+.. |..|.++|...
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~   62 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA   62 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccH
Confidence            4579999999999999999999 99999999764

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=87.77  E-value=0.16  Score=42.00  Aligned_cols=31  Identities=26%  Similarity=0.442  Sum_probs=27.0

Q ss_pred             cEEEECCCCchhHHHHhhhc-cC-eEEEEccCC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NA-TVLLLEKGG   73 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~-~VlvLE~G~   73 (570)
                      .|||||+|..|+=+|..|.+ |. +|.|++|-+
T Consensus        47 kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~   79 (153)
T d1gtea3          47 AVIVLGAGDTAFDCATSALRCGARRVFLVFRKG   79 (153)
T ss_dssp             EEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             EEEEECCChhHHHHHHHHHHcCCcceeEEEeCC
Confidence            59999999999999999988 75 588998764

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=86.60  E-value=0.14  Score=43.94  Aligned_cols=30  Identities=17%  Similarity=0.312  Sum_probs=27.7

Q ss_pred             EEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           44 YIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        44 vIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      |.|||+|..|...|..++. |++|.++|+.+
T Consensus         7 vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (186)
T d1wdka3           7 AAVLGAGIMGGGIAYQSASKGTPILMKDINE   37 (186)
T ss_dssp             EEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             EEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            8999999999999999999 99999999753

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=86.29  E-value=0.16  Score=43.59  Aligned_cols=30  Identities=27%  Similarity=0.398  Sum_probs=27.7

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKG   72 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G   72 (570)
                      .+.|||+|.-|.++|..|++ |.+|.+..+.
T Consensus         9 KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~   39 (189)
T d1n1ea2           9 KAVVFGSGAFGTALAMVLSKKCREVCVWHMN   39 (189)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTEEEEEEECSC
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEEec
Confidence            49999999999999999999 8999998765

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.02  E-value=0.15  Score=41.79  Aligned_cols=28  Identities=21%  Similarity=0.430  Sum_probs=26.3

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEc
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLE   70 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE   70 (570)
                      -++|||+|..|..-|..|.+ |.+|.|+-
T Consensus        15 rvLViGgG~va~~ka~~Ll~~GA~VtVva   43 (150)
T d1kyqa1          15 RILLIGGGEVGLTRLYKLMPTGCKLTLVS   43 (150)
T ss_dssp             EEEEEEESHHHHHHHHHHGGGTCEEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence            49999999999999999999 99999994

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=85.38  E-value=0.22  Score=38.65  Aligned_cols=29  Identities=31%  Similarity=0.365  Sum_probs=26.7

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEcc
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEK   71 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~   71 (570)
                      -++|||+|..|..-|..|.+ |.+|.|+..
T Consensus        14 ~vlVvG~G~va~~ka~~ll~~ga~v~v~~~   43 (113)
T d1pjqa1          14 DCLIVGGGDVAERKARLLLEAGARLTVNAL   43 (113)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTBEEEEEES
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            59999999999999999999 999999863

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.79  E-value=0.25  Score=41.87  Aligned_cols=30  Identities=23%  Similarity=0.335  Sum_probs=26.9

Q ss_pred             cEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331           43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKG   72 (570)
Q Consensus        43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G   72 (570)
                      .+.|||+|.-|.++|..|++ |.+|.+..|.
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r~   32 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTE   32 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECCG
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEec
Confidence            37899999999999999999 9999998653

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.43  E-value=0.27  Score=41.70  Aligned_cols=30  Identities=20%  Similarity=0.317  Sum_probs=26.9

Q ss_pred             EEEE-CCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           44 YIIV-GGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        44 vIIV-GsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      +.|| |+|.-|.++|.+|++ |.+|+|..|.+
T Consensus         3 i~vigGaG~iG~alA~~la~~G~~V~l~~R~~   34 (212)
T d1jaya_           3 VALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             EEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            6788 779999999999999 99999998764

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.72  E-value=0.4  Score=38.13  Aligned_cols=35  Identities=20%  Similarity=0.349  Sum_probs=31.4

Q ss_pred             cccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331           41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP   75 (570)
Q Consensus        41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~   75 (570)
                      .-||+|||+|-+++-.|..|++ -.+|.|+-|++..
T Consensus        34 gk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~   69 (130)
T d1vdca2          34 NKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAF   69 (130)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             CCEEEEEcCchHHHHHHHHHhCCCCcEEEEEecccc
Confidence            3489999999999999999999 8999999988643

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=83.16  E-value=0.39  Score=37.96  Aligned_cols=33  Identities=24%  Similarity=0.404  Sum_probs=30.3

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS   74 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~   74 (570)
                      -+|+|||+|-+++-.|..|++ ..+|.++-|++.
T Consensus        28 k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~   61 (126)
T d1trba2          28 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG   61 (126)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHhhcCCcEEEEeeccc
Confidence            379999999999999999999 999999998863

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=82.68  E-value=0.34  Score=40.52  Aligned_cols=32  Identities=13%  Similarity=0.269  Sum_probs=28.6

Q ss_pred             ccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      -.++|+|+|.++-++++.|++ |.+|.|+-|..
T Consensus        19 k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~   51 (170)
T d1nyta1          19 LRILLIGAGGASRGVLLPLLSLDCAVTITNRTV   51 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CEEEEECCcHHHHHHHHHhcccceEEEeccchH
Confidence            369999999999999999999 99999998764

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=82.45  E-value=0.36  Score=40.02  Aligned_cols=30  Identities=23%  Similarity=0.305  Sum_probs=27.3

Q ss_pred             EEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           44 YIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        44 vIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      +-|||.|.-|...|..|++ |.+|.+.++..
T Consensus         3 I~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~   33 (165)
T d2f1ka2           3 IGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (165)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence            6799999999999999999 99999998763

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=81.23  E-value=0.66  Score=35.76  Aligned_cols=47  Identities=15%  Similarity=0.207  Sum_probs=32.3

Q ss_pred             hhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCC
Q 008331          213 LEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAG  274 (570)
Q Consensus       213 l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaG  274 (570)
                      .+..++.|++++++++|+++.  ++     .   +.+.+.+|...++     .++.||+|+|
T Consensus        69 ~~~l~~~gV~i~~~~~V~~i~--~~-----~---~~~~~~~~~~~~i-----~~D~vi~A~G  115 (115)
T d1lvla2          69 AESLKKLGIALHLGHSVEGYE--NG-----C---LLANDGKGGQLRL-----EADRVLVAVG  115 (115)
T ss_dssp             HHHHHHHTCEEETTCEEEEEE--TT-----E---EEEECSSSCCCEE-----CCSCEEECCC
T ss_pred             HHHHHhhcceEEcCcEEEEEc--CC-----e---EEEEEcCCCeEEE-----EcCEEEEecC
Confidence            345566799999999999984  32     2   2223345555556     4799999998

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=80.22  E-value=0.5  Score=38.58  Aligned_cols=30  Identities=17%  Similarity=0.227  Sum_probs=27.9

Q ss_pred             EEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331           44 YIIVGGGTSGCPLAATLSQ-NATVLLLEKGG   73 (570)
Q Consensus        44 vIIVGsG~aG~~~A~~La~-g~~VlvLE~G~   73 (570)
                      +||+|.|..|..+|..|.+ |.+|+|+|.-+
T Consensus         6 iII~G~g~~g~~l~~~L~~~~~~v~vId~d~   36 (153)
T d1id1a_           6 FIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             EEEECCCHHHHHHHHHHHHcCCCEEEEeccc
Confidence            8999999999999999999 99999999654