Citrus Sinensis ID: 008338

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------57
Protein Sequence
MTSGKKYYKEKIARRKDEKPEEPEQPKYRDRAKERREDQNPDYEPTELGSFHAVAPPGNVDLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGKSRTSKEDQQLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSNDIPTTLHRSKADCPVPDEMVTVSVDGSVLDRIAKIMTYLRLGSSGKVLKKKKKERDVKVTGKTSTVVNEYDEEDKPSKANSGIPNGKTEKEILPPPPPPPKKNHVDSREKQGPIVARSEEDDIFVGAGTDYTVPGKDMNQSPVSEDMEESPRNKEKVSYFSESVYGPVPPAEPPLAWQDTNGYDAMQAQALAGGYQGEWQDYQYAEQLAYPEQYLQPDMQTYEMQAGLNMPQDPRFMTQEEKDRGLGSVFKRDDQRLLQLREKDAREKDPNFISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKGRLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNELHKINKILARKKMEKDTNGEGGHYDDDVQPGKKPRV
Secondary Structure (PSIPRED)
ccccccHHHHHHHHccccccccccccccccHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccHHcHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccHHHHHHHHHccccccccccHHHHHHHHcccccccccccHHHHHHHcccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccHHHHHHHHHHHHcccHHHHHccccccccHHHHcccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccccHHHHHcccccccccHccHHHHHHHHHHHHHHHHccccHHHcHHHcHHHHHHHHHHHHHHHHcHHHHHHHHHHHccccccccccccHHHHHHHHHHHHccccccccccccccccEEEEEEcccccccccccEEEEcccccccHHHcccccccHHHHHHHHHHHHHHHccccccEEEEcccHHHccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccEcccccEEEccccccccccccccccccccccccccccccccccccccccccHHccccccHHHHHHHHHHccccccccccccHHHcccHHHHcccccccccHcccccccccccccccHHHccccccEEccccHHHHHHHHccHHccccccccccHHHcccccHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcHHHHHHHccEcccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mtsgkkyykekiarrkdekpeepeqpkyrdrakerredqnpdyeptelgsfhavappgnvdlRLADAQKLSIEkskylggdvehthlvkGLDYALLNKVRSeidkkpdagddtdgksrtskedQQLSFRTAMAKSVYQWIVKPQTvmktnemflpgrmsfifnteggysndipttlhrskadcpvpdemvtvSVDGSVLDRIAKIMTYLRlgssgkvlkkkkkerdvkvtgkTSTVvneydeedkpskansgipngktekeilpppppppkknhvdsrekqgpivarseeddifvgagtdytvpgkdmnqspvsedmeesprnkekvSYFSesvygpvppaepplawqdtngyDAMQAQALAGGYQGEWQDYQYAEQlaypeqylqpdmqtyemqaglnmpqdprfmtqeekdrglgsvfkrDDQRLLQLREKdarekdpnfisesysecypgyqeynreivdsddeddlskmdmggrakgrlhrwdfeTEEEWATYNEQKEAMPKAAFQFGvkmqdgrktrkqnkdqKLTNELHKINKILARKKmekdtngegghydddvqpgkkprv
Flexible Loop (DISEMBL)
mtsgkkyykekiarrkdekpeepeqpkyrdrakerredqnpdyeptelgsfhavAPPGNVDLRLADAQKLSIEKSkylggdvehthlvKGLDYALLNKVRSeidkkpdagddtdgksrtskedqqlsfRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSNDIPTTLHRSKADCPVPDEMVTVSVDGSVLDRIAKIMTylrlgssgkvlkkkkkerdvkvtgktstvvneydeedkpskansgipngktekeilpppppppkknhvdsREKQGPivarseeddifvgagtdytvpgkdmnqspvsedmeesprnKEKVSYFSESVYGPVPPAEPPLAWQDTNGYDAMQAQALAGGYQGEWQDYQYAEQLAYPEQYLQPDMQTYEMQAGLNMPQDPRFMTQEEkdrglgsvfkrddqRLLQLrekdarekdpnfisesysecypgYQEYNREIVDSDDEDDLSKMDmggrakgrlhrwdfeTEEEWATYNEQKEAMPKAAFQFGVKmqdgrktrkqnkdqkltneLHKINKILarkkmekdtngegghydddvqpgkkprv
Low Complexity Region (SEG)
MTSGKKYYKEKIARRkdekpeepeqpkYRDRAKERREDQNPDYEPTELGSFHAVAPPGNVDLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGKSRTSKEDQQLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSNDIPTTLHRSKADCPVPDEMVTVSVDGSVLDRIAKIMTYLRLGSSGkvlkkkkkerdvkvtgkTSTVVNEYDEEDKPSKANSGIPNGKTEKEILpppppppKKNHVDSREKQGPIVARSEEDDIFVGAGTDYTVPGKDMNQSPVSEDMEESPRNKEKVSYFSESVYGPVPPAEPPLAWQDTNGYDAMQAQALAGGYQGEWQDYQYAEQLAYPEQYLQPDMQTYEMQAGLNMPQDPRFMTQEEKDRGLGSVFKRDDQRLLQLREKDAREKDPNFISESYSECYPGYQEYNREIVdsddeddlskmdmGGRAKGRLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNELHKINKILARKKMEKDTNGEGGHYDDDVQPGKKPRV
Disordered region (IsUnstruct)
***********************************************************VDLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKV******************************TAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSNDIPTTLHRSKADCPVPDEMVTVSVDGSVLDRIAKIMTYLRL*************************************************************************************************************************************LAWQDTNGYDAMQAQALAGGYQGEWQDYQYAEQLAYPEQYLQ**************************************************************ECYPGYQEY**************************HRWDFETEEEWAT*************************************************************************
Disordered Region (DISOPRED)
**********************************RR**********ELGSFHAVA*******************************LVKGLDYALL***********************************MAKSVYQWI***************GRMSFIFNTEGGYSNDIPTTLHRSKA************VDGSVLDRIAKIMT*************************************************************************************IFVGAGTDY**********************************************************ALAGGYQGEWQD***********************************************************************ISESYSECYPGYQE*****************************WDFETEEEWAT*************************************************************************
Disordered Region (DISEMBL)
MTSGKKYYKEKI*******************************EPTELGSFHAVAPPGNVDLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKK*******************LSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSNDIPTTLHRSKADCPVPDEMVTVSVDGSVLDRIAKIMTYLRLGSSGK***************KTSTVVNE***********SGIPNGKTEKEILPPP***************GPIVARSEEDDIFVGAGTDYTVPGKDMN******************SYFSESVYGPVPPAEPPLAWQDTNGYDAMQAQALAGGYQGEWQDYQYAEQLAYPEQYLQPDMQTYEMQAGLNMPQDPRFMTQEEKDRGLGSVFKRDDQRLLQLREKDAREKDPNFISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKGRLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKM************QKLTNELHKINKILARKKMEKDTNGEGGHYDDD*********
Disordered Region (DISPRO)
*****KYYKEKIARRKDEKPE******YRDRAKERREDQNPDYEPTELGSFHAVAPPGNVDLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDG********QQLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSNDIPTTLHRSKADCPVPDEMVTVSVDGSVLDRIAKIMTYLRLGSSGKVLKKKKK******************************************************************EDDIFVGAGTDYTVPGK*********************SYFSESVYGPVPPAEPPLAWQDTNGYDAMQAQALAGGYQGEWQDYQYAEQLAYPEQYLQPDMQTYEMQAGLNMPQDPRFMTQEEKDRGLGSVFKRDDQRLLQLREKDAREKDPNFISESYSECYPGYQEYNREIVDSDDEDDLSKMDM**RAKGRLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNELHKINKILARKK************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTSGKKYYKEKIARRKDEKPEEPEQPKYRDRAKERREDQNPDYEPTELGSFHAVAPPGNVDLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGKSRTSKEDQQLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSNDIPTTLHRSKADCPVPDEMVTVSVDGSVLDRIAKIMTYLRLGSSGKVLKKKKKERDVKVTGKTSTVVNEYDEEDKPSKANSGIPNGKTEKEILPPPPPPPKKNHVDSREKQGPIVARSEEDDIFVGAGTDYTVPGKDMNQSPVSEDMEESPRNKEKVSYFSESVYGPVPPAEPPLAWQDTNGYDAMQAQALAGGYQGEWQDYQYAEQLAYPEQYLQPDMQTYEMQAGLNMPQDPRFMTQEEKDRGLGSVFKRDDQRLLQLREKDAREKDPNFISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKGRLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNELHKINKILARKKMEKDTNGEGGHYDDDVQPGKKPRV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	569	2.2.26 [Sep-21-2011]
Q66HG8	557	Protein Red OS=Rattus nor	yes	no	0.363	0.371	0.415	4e-38
Q9Z1M8	557	Protein Red OS=Mus muscul	yes	no	0.363	0.371	0.415	4e-38
Q5NVI3	557	Protein Red OS=Pongo abel	yes	no	0.363	0.371	0.415	5e-38
Q13123	557	Protein Red OS=Homo sapie	yes	no	0.363	0.371	0.415	6e-38

>sp|Q66HG8|RED_RAT Protein Red OS=Rattus norvegicus GN=Ik PE=1 SV=1

 Score =  159 bits (403), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 91/219 (41%), Positives = 145/219 (66%), Gaps = 12/219 (5%)

Query: 5   KKYYKEKIARRKDEKPEEPEQPKYRDRAKERREDQNPDYEPTEL----GSFHAVAPPGNV 60
           KK Y  K+ +++ E+  E  + KYRDRAKERR+  N DYE TEL     ++ AV P    
Sbjct: 77  KKSYYAKLRQQEIERERELAE-KYRDRAKERRDGVNKDYEETELISTTANYRAVGPTAEA 135

Query: 61  DLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGK-SRT 119
           D   A+ ++  I++SK+LGGD+EHTHLVKGLD+ALL KVR+EI  K    ++   K  + 
Sbjct: 136 DKSAAEKRRQLIQESKFLGGDMEHTHLVKGLDFALLQKVRAEIASKEKEEEELMEKPQKE 195

Query: 120 SKEDQ----QLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSN-DIPT 174
           +K+D+    ++ F+T + ++VY+ + K ++  + NE+FLPGRM+++ + +  Y++ DIPT
Sbjct: 196 TKKDEDPENKIEFKTRLGRNVYRMLFKSKSYER-NELFLPGRMAYVVDLDDEYADTDIPT 254

Query: 175 TLHRSKADCPVPDEMVTVSVDGSVLDRIAKIMTYLRLGS 213
           TL RSKADCP  +   T++ +  V+ ++ +I++YLR G+
Sbjct: 255 TLIRSKADCPTMEAQTTLTTNDIVISKLTQILSYLRQGT 293

May bind to chromatin.
Rattus norvegicus (taxid: 10116)

>sp|Q9Z1M8|RED_MOUSE Protein Red OS=Mus musculus GN=Ik PE=2 SV=2

 Score =  159 bits (403), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 91/219 (41%), Positives = 145/219 (66%), Gaps = 12/219 (5%)

Query: 5   KKYYKEKIARRKDEKPEEPEQPKYRDRAKERREDQNPDYEPTEL----GSFHAVAPPGNV 60
           KK Y  K+ +++ E+  E  + KYRDRAKERR+  N DYE TEL     ++ AV P    
Sbjct: 77  KKSYYAKLRQQEIERERELAE-KYRDRAKERRDGVNKDYEETELISTTANYRAVGPTAEA 135

Query: 61  DLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGK-SRT 119
           D   A+ ++  I++SK+LGGD+EHTHLVKGLD+ALL KVR+EI  K    ++   K  + 
Sbjct: 136 DKSAAEKRRQLIQESKFLGGDMEHTHLVKGLDFALLQKVRAEIASKEKEEEELMEKPQKE 195

Query: 120 SKEDQ----QLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSN-DIPT 174
           +K+D+    ++ F+T + ++VY+ + K ++  + NE+FLPGRM+++ + +  Y++ DIPT
Sbjct: 196 TKKDEDPENKIEFKTRLGRNVYRMLFKSKSYER-NELFLPGRMAYVVDLDDEYADTDIPT 254

Query: 175 TLHRSKADCPVPDEMVTVSVDGSVLDRIAKIMTYLRLGS 213
           TL RSKADCP  +   T++ +  V+ ++ +I++YLR G+
Sbjct: 255 TLIRSKADCPTMEAQTTLTTNDIVISKLTQILSYLRQGT 293

May bind to chromatin.

Mus musculus (taxid: 10090)

>sp|Q5NVI3|RED_PONAB Protein Red OS=Pongo abelii GN=IK PE=2 SV=1

 Score =  159 bits (402), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 91/219 (41%), Positives = 144/219 (65%), Gaps = 12/219 (5%)

Query: 5   KKYYKEKIARRKDEKPEEPEQPKYRDRAKERREDQNPDYEPTEL----GSFHAVAPPGNV 60
           KK Y  K+ +++ E+  E  + KYRDRAKERR+  N DYE TEL     ++ AV P    
Sbjct: 77  KKSYYAKLRQQEIERERELAE-KYRDRAKERRDGVNKDYEETELISTTANYRAVGPTAEA 135

Query: 61  DLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGK-SRT 119
           D   A+ ++  I++SK+LGGD+EHTHLVKGLD+ALL KVR+EI  K    ++   K  + 
Sbjct: 136 DKSAAEKRRQLIQESKFLGGDMEHTHLVKGLDFALLQKVRAEIASKEKEEEELMEKPQKE 195

Query: 120 SKEDQ----QLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSN-DIPT 174
           +K+D+    ++ F+T + ++VY+ + K +   + NE+FLPGRM+++ + +  Y++ DIPT
Sbjct: 196 TKKDEDPENKIEFKTRLGRNVYRMLFKSKAYER-NELFLPGRMAYVVDLDDEYADTDIPT 254

Query: 175 TLHRSKADCPVPDEMVTVSVDGSVLDRIAKIMTYLRLGS 213
           TL RSKADCP  +   T++ +  V+ ++ +I++YLR G+
Sbjct: 255 TLIRSKADCPTMEAQTTLTTNDIVISKLTQILSYLRQGT 293

May bind to chromatin.

Pongo abelii (taxid: 9601)

>sp|Q13123|RED_HUMAN Protein Red OS=Homo sapiens GN=IK PE=1 SV=3

 Score =  159 bits (402), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 91/219 (41%), Positives = 144/219 (65%), Gaps = 12/219 (5%)

Query: 5   KKYYKEKIARRKDEKPEEPEQPKYRDRAKERREDQNPDYEPTEL----GSFHAVAPPGNV 60
           KK Y  K+ +++ E+  E  + KYRDRAKERR+  N DYE TEL     ++ AV P    
Sbjct: 77  KKSYYAKLRQQEIERERELAE-KYRDRAKERRDGVNKDYEETELISTTANYRAVGPTAEA 135

Query: 61  DLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGK-SRT 119
           D   A+ ++  I++SK+LGGD+EHTHLVKGLD+ALL KVR+EI  K    ++   K  + 
Sbjct: 136 DKSAAEKRRQLIQESKFLGGDMEHTHLVKGLDFALLQKVRAEIASKEKEEEELMEKPQKE 195

Query: 120 SKEDQ----QLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSN-DIPT 174
           +K+D+    ++ F+T + ++VY+ + K +   + NE+FLPGRM+++ + +  Y++ DIPT
Sbjct: 196 TKKDEDPENKIEFKTRLGRNVYRMLFKSKAYER-NELFLPGRMAYVVDLDDEYADTDIPT 254

Query: 175 TLHRSKADCPVPDEMVTVSVDGSVLDRIAKIMTYLRLGS 213
           TL RSKADCP  +   T++ +  V+ ++ +I++YLR G+
Sbjct: 255 TLIRSKADCPTMEAQTTLTTNDIVISKLTQILSYLRQGT 293

May bind to chromatin.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	569
225444599	566	PREDICTED: protein Red isoform 1 [Vitis	0.992	0.998	0.833	0.0
225444601	567	PREDICTED: protein Red isoform 2 [Vitis	0.992	0.996	0.824	0.0
255550309	567	red protein, putative [Ricinus communis]	0.996	1.0	0.836	0.0
224142762	567	predicted protein [Populus trichocarpa]	0.992	0.996	0.810	0.0
356530469	567	PREDICTED: protein Red [Glycine max]	0.991	0.994	0.815	0.0
356556428	565	PREDICTED: protein Red-like [Glycine max	0.987	0.994	0.806	0.0
449437520	561	PREDICTED: protein Red-like [Cucumis sat	0.985	1.0	0.789	0.0
359484499	536	PREDICTED: protein Red isoform 3 [Vitis	0.940	0.998	0.789	0.0
242082564	564	hypothetical protein SORBIDRAFT_08g00103	0.987	0.996	0.743	0.0
357157713	572	PREDICTED: protein Red-like [Brachypodiu	0.987	0.982	0.715	0.0

>gi|225444599|ref|XP_002274576.1| PREDICTED: protein Red isoform 1 [Vitis vinifera] gi|297738505|emb|CBI27750.3| unnamed protein product [Vitis vinifera]

 Score =  914 bits (2361), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 475/570 (83%), Positives = 516/570 (90%), Gaps = 5/570 (0%)

Query: 1   MTSGKKYYKEKIARRKDEKPEEPEQPKYRDRAKERREDQNPDYEPTELGSFHAVAPPGNV 60
           M S K+ +KEKI RRK+EKPEEPE PKYRDRAKERREDQNPDYEPTELGSFHAVAPPG V
Sbjct: 1   MASSKRNHKEKIIRRKEEKPEEPELPKYRDRAKERREDQNPDYEPTELGSFHAVAPPGTV 60

Query: 61  DLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGKSRTS 120
           DLR  DA K+SIE SKYLGGDVEHTHLVKGLDYALL+KVRSEI+KKP+ GDD DGKSR S
Sbjct: 61  DLRSTDANKISIEHSKYLGGDVEHTHLVKGLDYALLHKVRSEIEKKPEVGDDADGKSRVS 120

Query: 121 KEDQQLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSNDIPTTLHRSK 180
            EDQ LSFRTA AKSVYQWIVKPQTV+K+NEMFLPGRM+FIF+ EGG+S+DIPTTLHRSK
Sbjct: 121 NEDQPLSFRTATAKSVYQWIVKPQTVVKSNEMFLPGRMAFIFSMEGGFSSDIPTTLHRSK 180

Query: 181 ADCPVPDEMVTVSVDGSVLDRIAKIMTYLRLGSSGKVLKKKKKERDVKVTGKTSTVVNEY 240
           ADCPVP+EMVTV VDGSVLDRIAKIM+YLRLGSSGKVLKKKKKERDVK  GK STV NE+
Sbjct: 181 ADCPVPEEMVTVGVDGSVLDRIAKIMSYLRLGSSGKVLKKKKKERDVK--GKISTVGNEF 238

Query: 241 DEEDKPSKANSGIPNGKTEKEILPPPPPPPKKNHVDSREKQGPIVARSEEDDIFVGAGTD 300
           DEE KPSK + G+   +TE+E LPPP PP +KN+VDSREK GP VARSE+DDIFVG G +
Sbjct: 239 DEEKKPSKLDGGMSKNQTERESLPPPLPP-RKNYVDSREKHGPSVARSEQDDIFVGDGVE 297

Query: 301 YTVPGKDMNQSPVSEDMEESPRNKEKVSYFSESVYGPVPPAEPPLAWQDTNGYDAMQAQA 360
           Y +P KDM+QSPVSEDMEESPRNKE++SY SE  YGPVPP+EP   WQ TNGYDAMQAQA
Sbjct: 298 YDIPSKDMSQSPVSEDMEESPRNKERISYLSEPAYGPVPPSEPQ-EWQQTNGYDAMQAQA 356

Query: 361 LAGGYQGEWQDYQYAEQLAYPEQYLQPDMQTYEMQAGLNMPQDPRFMTQEEKDRGLGSVF 420
           LA GYQG+WQ+YQYAEQ+AYPEQYLQ +MQTY++QAG+ +PQDPRFMTQEEKDRGLGSVF
Sbjct: 357 LAAGYQGDWQEYQYAEQMAYPEQYLQQNMQTYDVQAGMGIPQDPRFMTQEEKDRGLGSVF 416

Query: 421 KRDDQRLLQLREKDAREKDPNFISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAK 480
           KRDDQRL QLREKDAREKDPNFISESYSECYPGYQEYNRE+VDSDDEDDLSKMDMGGRAK
Sbjct: 417 KRDDQRLQQLREKDAREKDPNFISESYSECYPGYQEYNREVVDSDDEDDLSKMDMGGRAK 476

Query: 481 GRLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNELHKINKI 540
           GRLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNELHKINKI
Sbjct: 477 GRLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNELHKINKI 536

Query: 541 LARKKMEK-DTNGEGGHYDDDVQPGKKPRV 569
           LARKKMEK + N +GG YDDD QPGKK R+
Sbjct: 537 LARKKMEKGEMNDDGGRYDDDSQPGKKLRI 566

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444601|ref|XP_002274600.1| PREDICTED: protein Red isoform 2 [Vitis vinifera]

 Score =  902 bits (2331), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 471/571 (82%), Positives = 515/571 (90%), Gaps = 6/571 (1%)

Query: 1   MTSGKKYYKEKIARRKDEKPEEPEQPKYRDRAKERREDQNPDYEPTELGSFHAVAPPGNV 60
           M S K+ +KEKI RRK+EKPEEPE PKYRDRAKERREDQNPDYEPTELGSFHAVAPPG V
Sbjct: 1   MASSKRNHKEKIIRRKEEKPEEPELPKYRDRAKERREDQNPDYEPTELGSFHAVAPPGTV 60

Query: 61  DLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDG-KSRT 119
           DLR  DA K+SIE SKYLGGDVEHTHLVKGLDYALL+KVRSEI+KKP+ GDD DG K+  
Sbjct: 61  DLRSTDANKISIEHSKYLGGDVEHTHLVKGLDYALLHKVRSEIEKKPEVGDDADGNKTSN 120

Query: 120 SKEDQQLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSNDIPTTLHRS 179
            ++DQ LSFRTA AKSVYQWIVKPQTV+K+NEMFLPGRM+FIF+ EGG+S+DIPTTLHRS
Sbjct: 121 PRKDQPLSFRTATAKSVYQWIVKPQTVVKSNEMFLPGRMAFIFSMEGGFSSDIPTTLHRS 180

Query: 180 KADCPVPDEMVTVSVDGSVLDRIAKIMTYLRLGSSGKVLKKKKKERDVKVTGKTSTVVNE 239
           KADCPVP+EMVTV VDGSVLDRIAKIM+YLRLGSSGKVLKKKKKERDVK  GK STV NE
Sbjct: 181 KADCPVPEEMVTVGVDGSVLDRIAKIMSYLRLGSSGKVLKKKKKERDVK--GKISTVGNE 238

Query: 240 YDEEDKPSKANSGIPNGKTEKEILPPPPPPPKKNHVDSREKQGPIVARSEEDDIFVGAGT 299
           +DEE KPSK + G+   +TE+E LPPP PP +KN+VDSREK GP VARSE+DDIFVG G 
Sbjct: 239 FDEEKKPSKLDGGMSKNQTERESLPPPLPP-RKNYVDSREKHGPSVARSEQDDIFVGDGV 297

Query: 300 DYTVPGKDMNQSPVSEDMEESPRNKEKVSYFSESVYGPVPPAEPPLAWQDTNGYDAMQAQ 359
           +Y +P KDM+QSPVSEDMEESPRNKE++SY SE  YGPVPP+EP   WQ TNGYDAMQAQ
Sbjct: 298 EYDIPSKDMSQSPVSEDMEESPRNKERISYLSEPAYGPVPPSEPQ-EWQQTNGYDAMQAQ 356

Query: 360 ALAGGYQGEWQDYQYAEQLAYPEQYLQPDMQTYEMQAGLNMPQDPRFMTQEEKDRGLGSV 419
           ALA GYQG+WQ+YQYAEQ+AYPEQYLQ +MQTY++QAG+ +PQDPRFMTQEEKDRGLGSV
Sbjct: 357 ALAAGYQGDWQEYQYAEQMAYPEQYLQQNMQTYDVQAGMGIPQDPRFMTQEEKDRGLGSV 416

Query: 420 FKRDDQRLLQLREKDAREKDPNFISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRA 479
           FKRDDQRL QLREKDAREKDPNFISESYSECYPGYQEYNRE+VDSDDEDDLSKMDMGGRA
Sbjct: 417 FKRDDQRLQQLREKDAREKDPNFISESYSECYPGYQEYNREVVDSDDEDDLSKMDMGGRA 476

Query: 480 KGRLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNELHKINK 539
           KGRLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNELHKINK
Sbjct: 477 KGRLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNELHKINK 536

Query: 540 ILARKKMEK-DTNGEGGHYDDDVQPGKKPRV 569
           ILARKKMEK + N +GG YDDD QPGKK R+
Sbjct: 537 ILARKKMEKGEMNDDGGRYDDDSQPGKKLRI 567

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550309|ref|XP_002516205.1| red protein, putative [Ricinus communis] gi|223544691|gb|EEF46207.1| red protein, putative [Ricinus communis]

 Score =  900 bits (2326), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/569 (83%), Positives = 505/569 (88%), Gaps = 2/569 (0%)

Query: 1   MTSGKKYYKEKIARRKDEKPEEPEQPKYRDRAKERREDQNPDYEPTELGSFHAVAPPGNV 60
           MTS K+ YKEKIARRK+EK EEPE PKYRDRAKERREDQNPDYEPTELGSFHAVAPPG V
Sbjct: 1   MTSLKRNYKEKIARRKEEKAEEPETPKYRDRAKERREDQNPDYEPTELGSFHAVAPPGAV 60

Query: 61  DLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGKSRTS 120
           D R ADA K+SIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDD DGKSR S
Sbjct: 61  DTRSADAHKISIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDADGKSRKS 120

Query: 121 KEDQQLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSNDIPTTLHRSK 180
           KEDQQLSFRTA AKSVYQ IVKPQ +MKTNEMFLPGRMSFIFN EGGY++DIPTTLHRSK
Sbjct: 121 KEDQQLSFRTATAKSVYQSIVKPQAIMKTNEMFLPGRMSFIFNMEGGYTHDIPTTLHRSK 180

Query: 181 ADCPVPDEMVTVSVDGSVLDRIAKIMTYLRLGSSGKVLKKKKKERDVKVTGKTSTVVNEY 240
           ADCPVP+EMVTV+VDGSVLDRIAKIM+YLRLGSSGK    KKK+++    GK S + +E+
Sbjct: 181 ADCPVPEEMVTVNVDGSVLDRIAKIMSYLRLGSSGK--VLKKKKKEKDAKGKISVIGHEH 238

Query: 241 DEEDKPSKANSGIPNGKTEKEILPPPPPPPKKNHVDSREKQGPIVARSEEDDIFVGAGTD 300
           +EEDK SK N GI N KTE+EILPPPPPPPKK+  DS EKQGPIVAR EE+DIFVG G D
Sbjct: 239 NEEDKHSKPNGGISNNKTEREILPPPPPPPKKSQPDSHEKQGPIVARGEENDIFVGDGVD 298

Query: 301 YTVPGKDMNQSPVSEDMEESPRNKEKVSYFSESVYGPVPPAEPPLAWQDTNGYDAMQAQA 360
           Y VPGKDM+QSPVSEDMEESPRNKE+VSYFSE VYGPVPP+ P   WQD NGYDA+QAQA
Sbjct: 299 YDVPGKDMSQSPVSEDMEESPRNKERVSYFSEPVYGPVPPSGPSQEWQDLNGYDAIQAQA 358

Query: 361 LAGGYQGEWQDYQYAEQLAYPEQYLQPDMQTYEMQAGLNMPQDPRFMTQEEKDRGLGSVF 420
           LA GYQGEWQDYQY EQLAY EQYLQ  MQ Y+MQA  N+ QDPRFMTQEEKDRGLGSVF
Sbjct: 359 LASGYQGEWQDYQYTEQLAYSEQYLQQTMQAYDMQAASNVLQDPRFMTQEEKDRGLGSVF 418

Query: 421 KRDDQRLLQLREKDAREKDPNFISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAK 480
           KRDDQRL QLREKDAREKDPNFISESYSECYPGYQEYNRE+VDSDDEDDLSKMDMGGRAK
Sbjct: 419 KRDDQRLQQLREKDAREKDPNFISESYSECYPGYQEYNREVVDSDDEDDLSKMDMGGRAK 478

Query: 481 GRLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNELHKINKI 540
           GRLHRWDFETEEEWA YNEQKEAMPKAA+QFGVKMQDGRKTRKQNKDQKL NELHKINKI
Sbjct: 479 GRLHRWDFETEEEWAKYNEQKEAMPKAAYQFGVKMQDGRKTRKQNKDQKLNNELHKINKI 538

Query: 541 LARKKMEKDTNGEGGHYDDDVQPGKKPRV 569
           LARKKMEKD+       DDDVQ  KKPR+
Sbjct: 539 LARKKMEKDSGDGDHFDDDDVQHAKKPRI 567

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142762|ref|XP_002324721.1| predicted protein [Populus trichocarpa] gi|222866155|gb|EEF03286.1| predicted protein [Populus trichocarpa]

 Score =  878 bits (2268), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/569 (81%), Positives = 506/569 (88%), Gaps = 4/569 (0%)

Query: 1   MTSGKKYYKEKIARRKDEKPEEPEQPKYRDRAKERREDQNPDYEPTELGSFHAVAPPGNV 60
           MTS KK+YKEKIARRK+EKPEE E PKYRDRAKERREDQNPDYEPTELGSFHAVAPPG V
Sbjct: 1   MTSSKKHYKEKIARRKEEKPEESETPKYRDRAKERREDQNPDYEPTELGSFHAVAPPGTV 60

Query: 61  DLR-LADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGKSRT 119
           D+R +AD+ ++SIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPD+ +D DGKSR 
Sbjct: 61  DIRSVADSNQISIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDSAEDVDGKSRA 120

Query: 120 SKEDQQLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSNDIPTTLHRS 179
           SKEDQ++ FRTA AKSVYQWIVKPQT++KTNEMFLPGRMSFIFN EGGYS+DIPTTLHRS
Sbjct: 121 SKEDQKILFRTATAKSVYQWIVKPQTIIKTNEMFLPGRMSFIFNMEGGYSHDIPTTLHRS 180

Query: 180 KADCPVPDEMVTVSVDGSVLDRIAKIMTYLRLGSSGKVLKKKKKERDVKVTGKTSTVVNE 239
           KADCPVP+EMVTVSVDGSVLDRIAKIM+YLRLGSSGKVLKKKKK++     GK S V NE
Sbjct: 181 KADCPVPEEMVTVSVDGSVLDRIAKIMSYLRLGSSGKVLKKKKKDK--DAKGKISVVGNE 238

Query: 240 YDEEDKPSKANSGIPNGKTEKEILPPPPPPPKKNHVDSREKQGPIVARSEEDDIFVGAGT 299
           YDE DKPSK + G+ N KTE+EILPPPPPPPK N  DS EKQ P VAR +E+DIFVG G 
Sbjct: 239 YDEHDKPSKPSGGMLNNKTEREILPPPPPPPKNNLADSFEKQQPAVAREDENDIFVGHGI 298

Query: 300 DYTVPGKDMNQSPVSEDMEESPRNKEKVSYFSESVYGPVPPAEPPLAWQDTNGYDAMQAQ 359
           DY VPGKDM+QSP+SEDMEESPRNKE++SYFSE VYGPVPP+E    WQD NGYDA+ AQ
Sbjct: 299 DYEVPGKDMSQSPLSEDMEESPRNKERLSYFSEPVYGPVPPSELSHEWQDPNGYDAVHAQ 358

Query: 360 ALAGGYQGEWQDYQYAEQLAYPEQYLQPDMQTYEMQAGLNMPQDPRFMTQEEKDRGLGSV 419
           AL+  YQGEWQ+YQYAEQ AYPEQY Q  MQ Y+MQA  ++  DPRFMTQEEKDRGLGSV
Sbjct: 359 ALSADYQGEWQNYQYAEQFAYPEQYTQQTMQAYDMQAASSIQPDPRFMTQEEKDRGLGSV 418

Query: 420 FKRDDQRLLQLREKDAREKDPNFISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRA 479
           FKRDDQRL QLREKDAREKDPNFIS+SYSECYP YQ + RE+VDSDDEDDLSKMDMGGRA
Sbjct: 419 FKRDDQRLQQLREKDAREKDPNFISDSYSECYPAYQHFTREVVDSDDEDDLSKMDMGGRA 478

Query: 480 KGRLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNELHKINK 539
           KGRLHRWDF+TE+EWA YNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKL NELH+INK
Sbjct: 479 KGRLHRWDFDTEDEWAKYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLNNELHQINK 538

Query: 540 ILARKKMEKDTNGEGGHYDDDVQPGKKPR 568
           ILA+KK++K+ NG+GGHYDDD  PGKK R
Sbjct: 539 ILAKKKIDKE-NGDGGHYDDDTPPGKKQR 566

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530469|ref|XP_003533803.1| PREDICTED: protein Red [Glycine max]

 Score =  874 bits (2258), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/569 (81%), Positives = 503/569 (88%), Gaps = 5/569 (0%)

Query: 2   TSGKKYYKEKIARRKDEKPEEPEQPKYRDRAKERREDQNPDYEPTELGSFHAVAPPGNVD 61
            S KK  KEK  RRK+EKPEEPE PKYRDRAKERREDQNPDYE TELG FHAVAPPG VD
Sbjct: 3   ASNKKNPKEKPIRRKEEKPEEPEVPKYRDRAKERREDQNPDYEQTELG-FHAVAPPGTVD 61

Query: 62  LRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGKSRTSK 121
           +R +DA KLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKP+AGDD +GKSR++ 
Sbjct: 62  IRSSDAHKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPEAGDDVEGKSRSAM 121

Query: 122 EDQQLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSNDIPTTLHRSKA 181
           EDQQ+S RTA AKSVYQWIVKPQT+ KTNEMFLPGRM+FI+N EGGY +DIPTTLHRSKA
Sbjct: 122 EDQQVSIRTATAKSVYQWIVKPQTISKTNEMFLPGRMTFIYNMEGGYHHDIPTTLHRSKA 181

Query: 182 DCPVPDEMVTVSVDGSVLDRIAKIMTYLRLGSSGKVLKKKKKERDVKVTGKTSTVVNEYD 241
           DCPVP+EMVTV+VDGSVLDRIAKIM+YLRLGSSGK+LKKK+KE+     GK   V N +D
Sbjct: 182 DCPVPEEMVTVNVDGSVLDRIAKIMSYLRLGSSGKILKKKRKEK--DAKGKILAVGNGFD 239

Query: 242 EEDKPSKANSGIPNGKTEKEILPPPPPPPKKNHVDSREKQGPIVARSEEDDIFVGAGTDY 301
           +EDKPSK   G  N +TEKEI+ PPPPP KKN + S EKQGP VAR+E+DDIFVG G DY
Sbjct: 240 KEDKPSKVEGGAKN-QTEKEIILPPPPPIKKNPLHSIEKQGPAVARAEDDDIFVGEGVDY 298

Query: 302 TVPGKDMNQSPVSEDMEESPRNKEKVSYFSESVYGPVPPAEPPLAWQDTNGYDAMQAQAL 361
            +PGKD++QSPVSEDMEESPRNKEK SYF+E  YGPV P+  P  WQ+TNGYD MQ QAL
Sbjct: 299 DIPGKDLSQSPVSEDMEESPRNKEKPSYFTEPTYGPVQPSMVPQGWQETNGYDVMQTQAL 358

Query: 362 AGGYQGEWQDYQYAEQLAYPEQYLQPDMQTYEMQAGLNMPQDPRFMTQEEKDRGLGSVFK 421
           A GYQGEWQ+YQYAEQLAYP+QYLQ +MQ Y+ QA LN+P DPRFMTQEEKDRGLGSVFK
Sbjct: 359 AAGYQGEWQEYQYAEQLAYPDQYLQQNMQAYDEQADLNLPLDPRFMTQEEKDRGLGSVFK 418

Query: 422 RDDQRLLQLREKDAREKDPNFISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKG 481
           RDDQRL QLREKDAREKDPNFISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKG
Sbjct: 419 RDDQRLQQLREKDAREKDPNFISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKG 478

Query: 482 RLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNELHKINKIL 541
           RLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKL N+LHKINKIL
Sbjct: 479 RLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLNNDLHKINKIL 538

Query: 542 ARKKMEKDTNGEGG-HYDDDVQPGKKPRV 569
           ARKKMEKDTNGEGG HYDD+  PGKK R+
Sbjct: 539 ARKKMEKDTNGEGGNHYDDEPTPGKKLRI 567

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556428|ref|XP_003546528.1| PREDICTED: protein Red-like [Glycine max]

 Score =  867 bits (2241), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/569 (80%), Positives = 499/569 (87%), Gaps = 7/569 (1%)

Query: 2   TSGKKYYKEKIARRKDEKPEEPEQPKYRDRAKERREDQNPDYEPTELGSFHAVAPPGNVD 61
            S KK +KEK  RRK+EKPEEPE PKYRDRAKERREDQNPDYE TELG FHAVAPPG VD
Sbjct: 3   ASNKKNHKEKPIRRKEEKPEEPEVPKYRDRAKERREDQNPDYEQTELG-FHAVAPPGTVD 61

Query: 62  LRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGKSRTSK 121
           +R +DA KLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKP+ GDD +GKSR++K
Sbjct: 62  IRSSDAHKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPETGDDVEGKSRSAK 121

Query: 122 EDQQLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSNDIPTTLHRSKA 181
           EDQQ+S RTA AKSVYQWIVKPQT+ KTNEMFLPGRM+FI+N EGGY +DIPTTLHRSKA
Sbjct: 122 EDQQVSIRTATAKSVYQWIVKPQTISKTNEMFLPGRMTFIYNMEGGYHHDIPTTLHRSKA 181

Query: 182 DCPVPDEMVTVSVDGSVLDRIAKIMTYLRLGSSGKVLKKKKKERDVKVTGKTSTVVNEYD 241
           DCPVP+EMVTV+VDGSVLDRIAKIM+YLRLGSSGK+LKKKKKE+     GK   V N +D
Sbjct: 182 DCPVPEEMVTVNVDGSVLDRIAKIMSYLRLGSSGKILKKKKKEK--DAKGKILAVGNGFD 239

Query: 242 EEDKPSKANSGIPNGKTEKEILPPPPPPPKKNHVDSREKQGPIVARSEEDDIFVGAGTDY 301
           +EDKPSK   G    K + E    PPPP KKN + SREKQGP VAR+E+DDIFVG G  Y
Sbjct: 240 KEDKPSKVEGG---AKNQTEKEIIPPPPIKKNPLHSREKQGPAVARAEDDDIFVGEGVHY 296

Query: 302 TVPGKDMNQSPVSEDMEESPRNKEKVSYFSESVYGPVPPAEPPLAWQDTNGYDAMQAQAL 361
            VPGKD++QSPVSEDMEESPRNKEK SY +E  YGPVPP+  P  WQ+TNGYD MQ QA 
Sbjct: 297 DVPGKDLSQSPVSEDMEESPRNKEKPSYVTEPTYGPVPPSMVPQGWQETNGYDVMQTQAF 356

Query: 362 AGGYQGEWQDYQYAEQLAYPEQYLQPDMQTYEMQAGLNMPQDPRFMTQEEKDRGLGSVFK 421
             GYQGEWQ+YQYAEQLAYP+QYLQ +MQ Y++QAGLN+PQDPRFM+QEEKDRGLGSVFK
Sbjct: 357 DAGYQGEWQEYQYAEQLAYPDQYLQQNMQPYDVQAGLNLPQDPRFMSQEEKDRGLGSVFK 416

Query: 422 RDDQRLLQLREKDAREKDPNFISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKG 481
           RDDQRL QLRE+DAREKDPNFISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKG
Sbjct: 417 RDDQRLQQLRERDAREKDPNFISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKG 476

Query: 482 RLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNELHKINKIL 541
           RLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKL N+LHKINKIL
Sbjct: 477 RLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLNNDLHKINKIL 536

Query: 542 ARKKMEKDTNGEGG-HYDDDVQPGKKPRV 569
           ARKKMEKDTNGEGG HYDD+  PGKK R+
Sbjct: 537 ARKKMEKDTNGEGGHHYDDEPTPGKKLRI 565

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437520|ref|XP_004136540.1| PREDICTED: protein Red-like [Cucumis sativus] gi|449514795|ref|XP_004164482.1| PREDICTED: protein Red-like [Cucumis sativus]

 Score =  856 bits (2212), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/569 (78%), Positives = 495/569 (86%), Gaps = 8/569 (1%)

Query: 1   MTSGKKYYKEKIARRKDEKPEEPEQPKYRDRAKERREDQNPDYEPTELGSFHAVAPPGNV 60
           M+S KK+YK+K AR K+EK EEPE PKYRDRAKERREDQNPDYEPTELG FHAVAPPG V
Sbjct: 1   MSSAKKHYKDKFARHKEEKTEEPETPKYRDRAKERREDQNPDYEPTELG-FHAVAPPGTV 59

Query: 61  DLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGKSRTS 120
           D+R ADA KLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDA  D +GK+   
Sbjct: 60  DIRAADAHKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAVGDAEGKASAP 119

Query: 121 KEDQQLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSNDIPTTLHRSK 180
           KEDQQ+ FRTA AKSVY+WIVKPQT +K+NE FLPGR SFI+N EGGYS+DIPTTLHRSK
Sbjct: 120 KEDQQVLFRTATAKSVYKWIVKPQTGIKSNETFLPGRTSFIYNMEGGYSHDIPTTLHRSK 179

Query: 181 ADCPVPDEMVTVSVDGSVLDRIAKIMTYLRLGSSGKVLKKKKKERDVKVTGKTSTVVNEY 240
           ADCPVP+EMVTV+VDGSVLDRIAKIM+YLRLGSSGK    KKK++D  V GK S++VNEY
Sbjct: 180 ADCPVPEEMVTVNVDGSVLDRIAKIMSYLRLGSSGK--VLKKKKKDKDVKGKISSIVNEY 237

Query: 241 DEEDKPSKANSGIPNGKTEKEILPPPPPPPKKNHVDSREKQGPIVARSEEDDIFVGAGTD 300
              +KPS  ++G+P  + E+E + PPPPP KKN +  +EKQGP+V R E+DDIFVGAG D
Sbjct: 238 VGINKPSTLDTGVPKKQMERE-MLPPPPPLKKNQIVLKEKQGPVVTRVEDDDIFVGAGVD 296

Query: 301 YTVPGKDMNQSPVSEDMEESPRNKEKVSYFSESVYGPVPPAEPPLAWQDTNGYDAMQAQA 360
           YTVPGKD++QSP+SEDMEESPRNKEK SYFSE  YGPVPP+ PP  WQ+TNGY  MQ QA
Sbjct: 297 YTVPGKDLSQSPLSEDMEESPRNKEKPSYFSEPAYGPVPPSGPPQEWQETNGYGVMQPQA 356

Query: 361 LAGGYQGEWQDYQYAEQLAYPEQYLQPDMQTYEMQAGLNMPQDPRFMTQEEKDRGLGSVF 420
              GYQGEWQDYQY+EQLAY EQYLQ +MQ Y+MQ G N+ QDPR MTQEEKDRGLGSVF
Sbjct: 357 FPAGYQGEWQDYQYSEQLAYSEQYLQLNMQAYDMQTGANIQQDPRLMTQEEKDRGLGSVF 416

Query: 421 KRDDQRLLQLREKDAREKDPNFISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAK 480
           KRDDQRL QLRE+DAREKDPNFISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAK
Sbjct: 417 KRDDQRLQQLRERDAREKDPNFISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAK 476

Query: 481 GRLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNELHKINKI 540
           GRLHRWDFETEEEWA YNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKL NELHKINKI
Sbjct: 477 GRLHRWDFETEEEWAKYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLNNELHKINKI 536

Query: 541 LARKKMEKDTNGEGGHYDDDVQPGKKPRV 569
           LA+KKMEK+ NG+    D+D+QPGKK RV
Sbjct: 537 LAKKKMEKEMNGD----DEDIQPGKKIRV 561

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484499|ref|XP_002274638.2| PREDICTED: protein Red isoform 3 [Vitis vinifera]

 Score =  839 bits (2168), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/570 (78%), Positives = 487/570 (85%), Gaps = 35/570 (6%)

Query: 1   MTSGKKYYKEKIARRKDEKPEEPEQPKYRDRAKERREDQNPDYEPTELGSFHAVAPPGNV 60
           M S K+ +KEKI RRK+EKPEEPE PKYRDRAKERREDQNPDYEPTELGSFHAVAPPG V
Sbjct: 1   MASSKRNHKEKIIRRKEEKPEEPELPKYRDRAKERREDQNPDYEPTELGSFHAVAPPGTV 60

Query: 61  DLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGKSRTS 120
           DLR  DA K+SIE SKYLGGDVEHTHLVKGLDYALL+KVRSEI+KKP+ GDD DGKSR S
Sbjct: 61  DLRSTDANKISIEHSKYLGGDVEHTHLVKGLDYALLHKVRSEIEKKPEVGDDADGKSRVS 120

Query: 121 KEDQQLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSNDIPTTLHRSK 180
            EDQ LSFRTA AK                              EGG+S+DIPTTLHRSK
Sbjct: 121 NEDQPLSFRTATAK------------------------------EGGFSSDIPTTLHRSK 150

Query: 181 ADCPVPDEMVTVSVDGSVLDRIAKIMTYLRLGSSGKVLKKKKKERDVKVTGKTSTVVNEY 240
           ADCPVP+EMVTV VDGSVLDRIAKIM+YLRLGSSGKVLKKKKKERDVK  GK STV NE+
Sbjct: 151 ADCPVPEEMVTVGVDGSVLDRIAKIMSYLRLGSSGKVLKKKKKERDVK--GKISTVGNEF 208

Query: 241 DEEDKPSKANSGIPNGKTEKEILPPPPPPPKKNHVDSREKQGPIVARSEEDDIFVGAGTD 300
           DEE KPSK + G+   +TE+E LPPP PP +KN+VDSREK GP VARSE+DDIFVG G +
Sbjct: 209 DEEKKPSKLDGGMSKNQTERESLPPPLPP-RKNYVDSREKHGPSVARSEQDDIFVGDGVE 267

Query: 301 YTVPGKDMNQSPVSEDMEESPRNKEKVSYFSESVYGPVPPAEPPLAWQDTNGYDAMQAQA 360
           Y +P KDM+QSPVSEDMEESPRNKE++SY SE  YGPVPP+EP   WQ TNGYDAMQAQA
Sbjct: 268 YDIPSKDMSQSPVSEDMEESPRNKERISYLSEPAYGPVPPSEPQ-EWQQTNGYDAMQAQA 326

Query: 361 LAGGYQGEWQDYQYAEQLAYPEQYLQPDMQTYEMQAGLNMPQDPRFMTQEEKDRGLGSVF 420
           LA GYQG+WQ+YQYAEQ+AYPEQYLQ +MQTY++QAG+ +PQDPRFMTQEEKDRGLGSVF
Sbjct: 327 LAAGYQGDWQEYQYAEQMAYPEQYLQQNMQTYDVQAGMGIPQDPRFMTQEEKDRGLGSVF 386

Query: 421 KRDDQRLLQLREKDAREKDPNFISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAK 480
           KRDDQRL QLREKDAREKDPNFISESYSECYPGYQEYNRE+VDSDDEDDLSKMDMGGRAK
Sbjct: 387 KRDDQRLQQLREKDAREKDPNFISESYSECYPGYQEYNREVVDSDDEDDLSKMDMGGRAK 446

Query: 481 GRLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNELHKINKI 540
           GRLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNELHKINKI
Sbjct: 447 GRLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNELHKINKI 506

Query: 541 LARKKMEK-DTNGEGGHYDDDVQPGKKPRV 569
           LARKKMEK + N +GG YDDD QPGKK R+
Sbjct: 507 LARKKMEKGEMNDDGGRYDDDSQPGKKLRI 536

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242082564|ref|XP_002441707.1| hypothetical protein SORBIDRAFT_08g001030 [Sorghum bicolor] gi|241942400|gb|EES15545.1| hypothetical protein SORBIDRAFT_08g001030 [Sorghum bicolor]

 Score =  809 bits (2089), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/569 (74%), Positives = 481/569 (84%), Gaps = 7/569 (1%)

Query: 1   MTSGKKYYKEKIARRKDEKPEEPEQPKYRDRAKERREDQNPDYEPTELGSFHAVAPPGNV 60
           M+S K YYKEK+ RRK+EK EEPE P+YRDRAKERREDQNPDYEPTELGSFHAVAPPG  
Sbjct: 1   MSSKKNYYKEKMMRRKEEKKEEPETPRYRDRAKERREDQNPDYEPTELGSFHAVAPPG-T 59

Query: 61  DLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGKSRTS 120
           DLRLADA K+SIEKSKYLGGD+EHTHLVKGLDYALL+KVRSEI+KKPDA D  D KSR +
Sbjct: 60  DLRLADAHKISIEKSKYLGGDLEHTHLVKGLDYALLHKVRSEIEKKPDAEDGKDAKSRAT 119

Query: 121 KEDQQLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSNDIPTTLHRSK 180
           KEDQ +SFRTA  +SVYQWI+KPQ+++K NE+FLPGRMSFI+N E G +NDIPTTLHRSK
Sbjct: 120 KEDQAISFRTATLQSVYQWIIKPQSIIKENELFLPGRMSFIYNMEEGVTNDIPTTLHRSK 179

Query: 181 ADCPVPDEMVTVSVDGSVLDRIAKIMTYLRLGSSGKVLKKKKKERDVKVTGKTSTVVNEY 240
           ADCP+P+EMVTVSVDGSVLDRIAKIMTYLRLGSSGKVLKKKKKERD+K  GK++    +Y
Sbjct: 180 ADCPIPEEMVTVSVDGSVLDRIAKIMTYLRLGSSGKVLKKKKKERDIK--GKSNLASGDY 237

Query: 241 DEEDKPSKANSGIPNGKTEKEILPPPPPPPKKNHVDSREKQGPIVARSEEDDIFVGAGTD 300
           DE  KPS+ N      K + ++ PPP PPP+ N+ + +EKQ   V+R+++DDIFVG G D
Sbjct: 238 DESVKPSQINGSTL--KHQSDMPPPPAPPPRNNNFNGKEKQPVPVSRADDDDIFVGDGVD 295

Query: 301 YTVPGKDMNQSPVSEDMEESPRNKEKVSYFSESVYGPVPPAEPPLAWQDTNGYDAMQAQA 360
           Y+VP K+M+QSPVS DM+ESP N +K S F+E +YGPVPP+EP  AWQ  NGYDA+QAQ 
Sbjct: 296 YSVPNKEMSQSPVS-DMDESPHNHQKQSNFTEPMYGPVPPSEPAQAWQQQNGYDAVQAQM 354

Query: 361 LAGGYQGEWQDYQYAEQ-LAYPEQYLQPDMQTYEMQAGLNMPQDPRFMTQEEKDRGLGSV 419
            A GYQG+W  Y YAEQ L YPEQY+Q   Q Y++ A  ++ QDPRFMTQ +KDRGLGSV
Sbjct: 355 AAAGYQGDWSSYVYAEQQLGYPEQYVQQSTQEYDVLADPSLSQDPRFMTQADKDRGLGSV 414

Query: 420 FKRDDQRLLQLREKDAREKDPNFISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRA 479
           FKRDDQRL QLREKDARE+DPNFIS+SYSECYPGYQEYN EI  SDDEDDLSKMDMGGRA
Sbjct: 415 FKRDDQRLNQLREKDARERDPNFISDSYSECYPGYQEYNNEIAGSDDEDDLSKMDMGGRA 474

Query: 480 KGRLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNELHKINK 539
           KGRLHRWDFETEEEWA YN+QKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTN+LHKINK
Sbjct: 475 KGRLHRWDFETEEEWAKYNDQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNDLHKINK 534

Query: 540 ILARKKMEKDTNGEGGHYDDDVQPGKKPR 568
           ILARKK EKD   +GGHYDDD+   KK R
Sbjct: 535 ILARKKGEKDGAEDGGHYDDDLPSSKKQR 563

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357157713|ref|XP_003577889.1| PREDICTED: protein Red-like [Brachypodium distachyon]

 Score =  796 bits (2056), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/573 (71%), Positives = 470/573 (82%), Gaps = 11/573 (1%)

Query: 2   TSGKKYYKEKIARRKDEKPEEPEQ-PKYRDRAKERREDQNPDYEPTELGSFHAVAPPG-- 58
           T  K  YKEK+ARRK+E  +E  + P+YRDRAKERREDQNPDYEPTELGSFHAVAPPG  
Sbjct: 6   TKKKSNYKEKMARRKEENKKEEPETPRYRDRAKERREDQNPDYEPTELGSFHAVAPPGAP 65

Query: 59  NVDLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGKSR 118
             DLRLADAQK+SIEKSKYLGGD+EHTHLVKGLD+ALLNKVRSEIDKKPDA D  D K+R
Sbjct: 66  GADLRLADAQKISIEKSKYLGGDLEHTHLVKGLDFALLNKVRSEIDKKPDAEDGKDAKAR 125

Query: 119 TSKEDQQLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGY-SNDIPTTLH 177
            +KED+ +SFRTA+AKSVYQ IVK Q+  K NEMFLPGRM+FI+N E G  +NDIPTTLH
Sbjct: 126 ETKEDRAISFRTAIAKSVYQSIVKSQSTPKANEMFLPGRMAFIYNMEDGLITNDIPTTLH 185

Query: 178 RSKADCPVPDEMVTVSVDGSVLDRIAKIMTYLRLGSSGKVLKKKKKERDVKVTGKTSTVV 237
           RSKADCPVP+EMVTVSVDGSVLDRIAKIM+YLRLGSSGKVLKKKKKERD K  GK +   
Sbjct: 186 RSKADCPVPEEMVTVSVDGSVLDRIAKIMSYLRLGSSGKVLKKKKKERDAK--GKNNLAG 243

Query: 238 NEYDEEDKPSKANSGIPNGKTEKEILPPPPPPPKKNHVDSREKQGPIVARSEEDDIFVGA 297
           ++Y+E  +P + N   P    +KE+LPPPPP  +K++   +EKQ   +AR+++DDIFVG 
Sbjct: 244 SDYNEGVRPPQTNGSAPKHHLDKEMLPPPPP--RKSNFKEKEKQPAPIARADDDDIFVGD 301

Query: 298 GTDYTVPGKDMNQSPVSEDMEESPRNKEKVSYFSESVYGPVPPAEPPLAWQDTNGYDAMQ 357
           G DYT+P K+++ SP+SEDM+ESP N +  S+ +E VYGP+ P+EP  AWQ   GYDA+Q
Sbjct: 302 GVDYTIPNKELSHSPISEDMDESPHNHQNQSHLTEPVYGPIQPSEPAQAWQQVGGYDAIQ 361

Query: 358 AQALAGGYQGEWQDYQYAEQ-LAYPEQYLQPDMQTYEMQAGLNMPQDPRFMTQEEKDRGL 416
           AQ  A GYQGEW  YQYAEQ LAYPEQY+Q     Y++ A  ++PQDPR MTQ +KD+GL
Sbjct: 362 AQMAAAGYQGEWPGYQYAEQQLAYPEQYMQQGALGYDVLADPDIPQDPRLMTQADKDKGL 421

Query: 417 GSVFKRDDQRLLQLREKDAREKDPNFISESYSECYPGYQEYNREIVDSDDEDDLSKMDMG 476
           GSVFKRDD RL QLREKDAREKDPNFIS+SYSECYPGYQ YN+EI  SDDEDDLSKMDMG
Sbjct: 422 GSVFKRDDDRLKQLREKDAREKDPNFISDSYSECYPGYQGYNQEIAGSDDEDDLSKMDMG 481

Query: 477 GRAKGRLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNELHK 536
           GRAKGRLHRWDFETEEEWA YN+QKEAMPKAAFQFGVKMQDGRKTRKQNKDQKL N+LHK
Sbjct: 482 GRAKGRLHRWDFETEEEWAKYNDQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLNNDLHK 541

Query: 537 INKILARKKMEKDTNGEGGHYDDDVQPGKKPRV 569
           INKILARKK +KD  G  GHYDDD+   KK R 
Sbjct: 542 INKILARKKGDKD--GGEGHYDDDLPSVKKQRA 572

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	569
TAIR|locus:2066221	585	SMU2 "AT2G26460" [Arabidopsis	0.992	0.965	0.638	9.5e-192
ZFIN|ZDB-GENE-030131-960	548	ik "IK cytokine" [Danio rerio	0.363	0.377	0.415	1e-63
UNIPROTKB|F1NDF8	552	IK "Uncharacterized protein" [	0.363	0.375	0.401	2.1e-63
RGD|1359352	557	Ik "IK cytokine, down-regulato	0.363	0.371	0.406	1.8e-60
UNIPROTKB|F1LSE1	557	Ik "Protein Red" [Rattus norve	0.363	0.371	0.406	1.8e-60
UNIPROTKB|F1RGE2	873	LOC100738153 "Uncharacterized	0.363	0.237	0.406	2e-60
UNIPROTKB|K7GQD2	553	LOC100738153 "Uncharacterized	0.363	0.374	0.406	2.3e-60
UNIPROTKB|Q13123	557	IK "Protein Red" [Homo sapiens	0.363	0.371	0.406	2.3e-60
UNIPROTKB|A4FUY8	555	IK "Uncharacterized protein" [	0.363	0.372	0.406	2.3e-60
MGI|MGI:1345142	557	Ik "IK cytokine" [Mus musculus	0.363	0.371	0.406	3.8e-60

TAIR|locus:2066221 SMU2 "AT2G26460" [Arabidopsis thaliana (taxid:3702)]

 Score = 1858 (659.1 bits), Expect = 9.5e-192, P = 9.5e-192
 Identities = 375/587 (63%), Positives = 434/587 (73%)

Query:     1 MTSGKKYYKEKIARRXXXXXXXXXXXXYRDRAKERREDQNPDYEPTELGSFHAVAPPGNV 60
             M   K ++KEK ARR            YRDRAKERRE+QNPDY+P+EL SFHAVAPPG V
Sbjct:     1 MKPSKSHHKEKTARRREEKLEESDNPKYRDRAKERRENQNPDYDPSELSSFHAVAPPGAV 60

Query:    61 DLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGKSRTS 120
             D+R ADA K+SIE SKYLGGDVEHTHLVKGLDYALLNKVRSEI KKPD  D   GK+   
Sbjct:    61 DIRAADALKISIENSKYLGGDVEHTHLVKGLDYALLNKVRSEIVKKPDGEDGDGGKTSAP 120

Query:   121 KEDQQLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSNDIPTTLHRSK 180
             KEDQ+++FRT  AKSVYQWIVKPQT++K+NEMFLPGRM+F+++ EGGY++DIPTTL+RSK
Sbjct:   121 KEDQRVTFRTIAAKSVYQWIVKPQTIIKSNEMFLPGRMTFVYDMEGGYTHDIPTTLYRSK 180

Query:   181 ADCPVPDEMVTVSVDGSVLDRIAKIMTYLRLGSSGXXXXXXXXXXXXXXXXXTSTVVNEY 240
             ADCPVP+E VTV+VDGSVLDRIAKIM+YLRLGSSG                  ST+ N+Y
Sbjct:   181 ADCPVPEEFVTVNVDGSVLDRIAKIMSYLRLGSSGKVLKKKKKEKDGKGKM--STIANDY 238

Query:   241 DEEDKPSKANSGIPNGKTEKEILXXXXXXXKK-NHVD-SREKQGPIVARSEEDDIFVGAG 298
             DE+D  SK  +G     +++E+L          NH+D S +++ P VAR+++DDIFVG G
Sbjct:   239 DEDDNKSKIENGSSVNISDREVLPPPPPLPPGINHLDLSTKQEEPPVARTDDDDIFVGEG 298

Query:   299 TDYTVPGKDMNQSPVSEDMEESPRNKEKVSYFSESVYGPVP---P--AEP------PLA- 346
              DYTVPGKD+ QSP+SEDMEESPR+KEKVSYF E  YGPV    P  AEP      P A 
Sbjct:   299 VDYTVPGKDVTQSPISEDMEESPRDKEKVSYFDEPAYGPVQEKVPYFAEPAYGPVQPSAG 358

Query:   347 --WQDTNGYDAMQAQALAGGYQGEWQDYQYAEQLAYPEQYLQPDMQTYEMQAGLNMPQDP 404
               WQD + Y AMQ Q LA GY GEWQ+YQYAEQ  Y EQYLQP M+ YE+Q   ++  DP
Sbjct:   359 QEWQDMSAYGAMQTQGLAPGYPGEWQEYQYAEQTGYQEQYLQPGMEGYEVQPETDVLLDP 418

Query:   405 RFMTQEEKDRGLGSVFKRDDQRLLQLREKDAREKDPNFISESYSECYPGYQEYNREIVXX 464
             + M+QEEKDRGLGSVFKRDDQRL QLRE DAREKDP F+SESYSECYPGYQEYN EIV  
Sbjct:   419 QLMSQEEKDRGLGSVFKRDDQRLQQLRESDAREKDPTFVSESYSECYPGYQEYNHEIVGS 478

Query:   465 XXXXXXXXXXXGGRAKGRLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQ 524
                        GG+AKG LHRWDFETEEEW  YNEQKEAMPKAAFQFGVKMQDGRKTRKQ
Sbjct:   479 DEEPDLSKMDMGGKAKGGLHRWDFETEEEWEKYNEQKEAMPKAAFQFGVKMQDGRKTRKQ 538

Query:   525 NKD--QKLTNELHKINKILARKKMEKDTNGEGGHYDD-DVQPGKKPR 568
             N+D  QKL NELH+INKIL RKKMEK+  G+    D  + Q  K+ +
Sbjct:   539 NRDRDQKLNNELHQINKILTRKKMEKE-GGDVASLDAAEAQTPKRSK 584

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0008380 "RNA splicing" evidence=IMP

ZFIN|ZDB-GENE-030131-960 ik "IK cytokine" [Danio rerio (taxid:7955)]

 Score = 419 (152.6 bits), Expect = 1.0e-63, Sum P(3) = 1.0e-63
 Identities = 91/219 (41%), Positives = 138/219 (63%)

Query:     5 KKYYKEKIARRXXXXXXXXXXXXYRDRAKERREDQNPDYEPTEL----GSFHAVAPPGNV 60
             KK Y  K+ R+            YRDRA+ERR+  N DYE TEL     ++ AV P    
Sbjct:    77 KKSYYAKL-RQQEMERERELAEKYRDRARERRDGVNKDYEETELISTTANYRAVGPTAEA 135

Query:    61 DLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGK-SRT 119
             D   A+ ++  I++SK+LGGD+EHTHLVKGLD+ALL KVR+EI  K    +D   K  + 
Sbjct:   136 DKSAAEKRRQLIQESKFLGGDMEHTHLVKGLDFALLQKVRAEITSKEREEEDMIEKVQKE 195

Query:   120 SKED----QQLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSN-DIPT 174
              K+D    Q++ F+T M +++Y+ + K +  ++ NE+FLPGRM+++ + E  Y++ DIPT
Sbjct:   196 VKKDEDPEQKIEFKTRMGRNIYRNVFKGRQ-LERNELFLPGRMAYVVDLEDEYADTDIPT 254

Query:   175 TLHRSKADCPVPDEMVTVSVDGSVLDRIAKIMTYLRLGS 213
             TL RSKADCP  +   T++ +  V+ ++ +I++YLR G+
Sbjct:   255 TLIRSKADCPTMEAQTTLTTNDIVISKLTQILSYLRQGT 293

GO:0005634 "nucleus" evidence=IEA

GO:0060047 "heart contraction" evidence=IMP

UNIPROTKB|F1NDF8 IK "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 410 (149.4 bits), Expect = 2.1e-63, Sum P(3) = 2.1e-63
 Identities = 88/219 (40%), Positives = 138/219 (63%)

Query:     5 KKYYKEKIARRXXXXXXXXXXXXYRDRAKERREDQNPDYEPTEL----GSFHAVAPPGNV 60
             KK Y  K+ R+            YRDRAKERR+  N DYE TEL     ++ AV P    
Sbjct:    77 KKSYYAKL-RQQEIERERELAEKYRDRAKERRDGVNKDYEETELISTTANYRAVGPTAEA 135

Query:    61 DLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGK-SRT 119
             D   A+ ++  I++SK+LGGD+EHTHLVKGLD+ALL KVR+EI  K    ++   K  + 
Sbjct:   136 DKSAAEKRRQLIQESKFLGGDMEHTHLVKGLDFALLQKVRAEIASKEKEEEEMMEKPQKE 195

Query:   120 SKEDQ----QLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSN-DIPT 174
             +K+D+    ++ F+T + +++Y+ + K +   + NE+FLPGRM+++ + +  Y++ DIPT
Sbjct:   196 TKKDEDPENKIEFKTRLGRNIYRILFKNKAYER-NELFLPGRMAYVVDLDDEYADTDIPT 254

Query:   175 TLHRSKADCPVPDEMVTVSVDGSVLDRIAKIMTYLRLGS 213
             TL RSKADCP  +   T++ +  V+ ++ +I++YLR G+
Sbjct:   255 TLIRSKADCPTMEAQTTLTTNDIVISKLTQILSYLRQGT 293

GO:0005634 "nucleus" evidence=IEA

RGD|1359352 Ik "IK cytokine, down-regulator of HLA II" [Rattus norvegicus (taxid:10116)]

 Score = 415 (151.1 bits), Expect = 1.8e-60, Sum P(2) = 1.8e-60
 Identities = 89/219 (40%), Positives = 139/219 (63%)

Query:     5 KKYYKEKIARRXXXXXXXXXXXXYRDRAKERREDQNPDYEPTEL----GSFHAVAPPGNV 60
             KK Y  K+ R+            YRDRAKERR+  N DYE TEL     ++ AV P    
Sbjct:    77 KKSYYAKL-RQQEIERERELAEKYRDRAKERRDGVNKDYEETELISTTANYRAVGPTAEA 135

Query:    61 DLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGK-SRT 119
             D   A+ ++  I++SK+LGGD+EHTHLVKGLD+ALL KVR+EI  K    ++   K  + 
Sbjct:   136 DKSAAEKRRQLIQESKFLGGDMEHTHLVKGLDFALLQKVRAEIASKEKEEEELMEKPQKE 195

Query:   120 SKEDQ----QLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSN-DIPT 174
             +K+D+    ++ F+T + ++VY+ + K ++  + NE+FLPGRM+++ + +  Y++ DIPT
Sbjct:   196 TKKDEDPENKIEFKTRLGRNVYRMLFKSKSYER-NELFLPGRMAYVVDLDDEYADTDIPT 254

Query:   175 TLHRSKADCPVPDEMVTVSVDGSVLDRIAKIMTYLRLGS 213
             TL RSKADCP  +   T++ +  V+ ++ +I++YLR G+
Sbjct:   255 TLIRSKADCPTMEAQTTLTTNDIVISKLTQILSYLRQGT 293

GO:0005634 "nucleus" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

UNIPROTKB|F1LSE1 Ik "Protein Red" [Rattus norvegicus (taxid:10116)]

 Score = 415 (151.1 bits), Expect = 1.8e-60, Sum P(2) = 1.8e-60
 Identities = 89/219 (40%), Positives = 139/219 (63%)

Query:     5 KKYYKEKIARRXXXXXXXXXXXXYRDRAKERREDQNPDYEPTEL----GSFHAVAPPGNV 60
             KK Y  K+ R+            YRDRAKERR+  N DYE TEL     ++ AV P    
Sbjct:    77 KKSYYAKL-RQQEIERERELAEKYRDRAKERRDGVNKDYEETELISTTANYRAVGPTAEA 135

Query:    61 DLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGK-SRT 119
             D   A+ ++  I++SK+LGGD+EHTHLVKGLD+ALL KVR+EI  K    ++   K  + 
Sbjct:   136 DKSAAEKRRQLIQESKFLGGDMEHTHLVKGLDFALLQKVRAEIASKEKEEEELMEKPQKE 195

Query:   120 SKEDQ----QLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSN-DIPT 174
             +K+D+    ++ F+T + ++VY+ + K ++  + NE+FLPGRM+++ + +  Y++ DIPT
Sbjct:   196 TKKDEDPENKIEFKTRLGRNVYRMLFKSKSYER-NELFLPGRMAYVVDLDDEYADTDIPT 254

Query:   175 TLHRSKADCPVPDEMVTVSVDGSVLDRIAKIMTYLRLGS 213
             TL RSKADCP  +   T++ +  V+ ++ +I++YLR G+
Sbjct:   255 TLIRSKADCPTMEAQTTLTTNDIVISKLTQILSYLRQGT 293

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1RGE2 LOC100738153 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 414 (150.8 bits), Expect = 2.0e-60, Sum P(2) = 2.0e-60
 Identities = 89/219 (40%), Positives = 138/219 (63%)

Query:     5 KKYYKEKIARRXXXXXXXXXXXXYRDRAKERREDQNPDYEPTEL----GSFHAVAPPGNV 60
             KK Y  K+ R+            YRDRAKERR+  N DYE TEL     ++ AV P    
Sbjct:    18 KKSYYAKL-RQQEIERERELAEKYRDRAKERRDGVNKDYEETELISTTANYRAVGPTAEA 76

Query:    61 DLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGK-SRT 119
             D   A+ ++  I++SK+LGGD+EHTHLVKGLD+ALL KVR+EI  K    ++   K  + 
Sbjct:    77 DKSAAEKRRQLIQESKFLGGDMEHTHLVKGLDFALLQKVRAEIASKEKEEEELMEKPQKE 136

Query:   120 SKEDQ----QLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSN-DIPT 174
             +K+D+    ++ F+T + ++VY+ + K +   + NE+FLPGRM+++ + +  Y++ DIPT
Sbjct:   137 TKKDEDPENKIEFKTRLGRNVYRMLFKSKAYER-NELFLPGRMAYVVDLDDEYADTDIPT 195

Query:   175 TLHRSKADCPVPDEMVTVSVDGSVLDRIAKIMTYLRLGS 213
             TL RSKADCP  +   T++ +  V+ ++ +I++YLR G+
Sbjct:   196 TLIRSKADCPTMEAQTTLTTNDIVISKLTQILSYLRQGT 234

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|K7GQD2 LOC100738153 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 414 (150.8 bits), Expect = 2.3e-60, Sum P(2) = 2.3e-60
 Identities = 89/219 (40%), Positives = 138/219 (63%)

Query:     5 KKYYKEKIARRXXXXXXXXXXXXYRDRAKERREDQNPDYEPTEL----GSFHAVAPPGNV 60
             KK Y  K+ R+            YRDRAKERR+  N DYE TEL     ++ AV P    
Sbjct:    77 KKSYYAKL-RQQEIERERELAEKYRDRAKERRDGVNKDYEETELISTTANYRAVGPTAEA 135

Query:    61 DLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGK-SRT 119
             D   A+ ++  I++SK+LGGD+EHTHLVKGLD+ALL KVR+EI  K    ++   K  + 
Sbjct:   136 DKSAAEKRRQLIQESKFLGGDMEHTHLVKGLDFALLQKVRAEIASKEKEEEELMEKPQKE 195

Query:   120 SKEDQ----QLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSN-DIPT 174
             +K+D+    ++ F+T + ++VY+ + K +   + NE+FLPGRM+++ + +  Y++ DIPT
Sbjct:   196 TKKDEDPENKIEFKTRLGRNVYRMLFKSKAYER-NELFLPGRMAYVVDLDDEYADTDIPT 254

Query:   175 TLHRSKADCPVPDEMVTVSVDGSVLDRIAKIMTYLRLGS 213
             TL RSKADCP  +   T++ +  V+ ++ +I++YLR G+
Sbjct:   255 TLIRSKADCPTMEAQTTLTTNDIVISKLTQILSYLRQGT 293

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q13123 IK "Protein Red" [Homo sapiens (taxid:9606)]

 Score = 414 (150.8 bits), Expect = 2.3e-60, Sum P(2) = 2.3e-60
 Identities = 89/219 (40%), Positives = 138/219 (63%)

Query:     5 KKYYKEKIARRXXXXXXXXXXXXYRDRAKERREDQNPDYEPTEL----GSFHAVAPPGNV 60
             KK Y  K+ R+            YRDRAKERR+  N DYE TEL     ++ AV P    
Sbjct:    77 KKSYYAKL-RQQEIERERELAEKYRDRAKERRDGVNKDYEETELISTTANYRAVGPTAEA 135

Query:    61 DLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGK-SRT 119
             D   A+ ++  I++SK+LGGD+EHTHLVKGLD+ALL KVR+EI  K    ++   K  + 
Sbjct:   136 DKSAAEKRRQLIQESKFLGGDMEHTHLVKGLDFALLQKVRAEIASKEKEEEELMEKPQKE 195

Query:   120 SKEDQ----QLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSN-DIPT 174
             +K+D+    ++ F+T + ++VY+ + K +   + NE+FLPGRM+++ + +  Y++ DIPT
Sbjct:   196 TKKDEDPENKIEFKTRLGRNVYRMLFKSKAYER-NELFLPGRMAYVVDLDDEYADTDIPT 254

Query:   175 TLHRSKADCPVPDEMVTVSVDGSVLDRIAKIMTYLRLGS 213
             TL RSKADCP  +   T++ +  V+ ++ +I++YLR G+
Sbjct:   255 TLIRSKADCPTMEAQTTLTTNDIVISKLTQILSYLRQGT 293

GO:0005634 "nucleus" evidence=IEA

GO:0005615 "extracellular space" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=TAS

GO:0006955 "immune response" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|A4FUY8 IK "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 414 (150.8 bits), Expect = 2.3e-60, Sum P(2) = 2.3e-60
 Identities = 89/219 (40%), Positives = 138/219 (63%)

Query:     5 KKYYKEKIARRXXXXXXXXXXXXYRDRAKERREDQNPDYEPTEL----GSFHAVAPPGNV 60
             KK Y  K+ R+            YRDRAKERR+  N DYE TEL     ++ AV P    
Sbjct:    77 KKSYYAKL-RQQEIERERELAEKYRDRAKERRDGVNKDYEETELISTTANYRAVGPTAEA 135

Query:    61 DLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGK-SRT 119
             D   A+ ++  I++SK+LGGD+EHTHLVKGLD+ALL KVR+EI  K    ++   K  + 
Sbjct:   136 DKSAAEKRRQLIQESKFLGGDMEHTHLVKGLDFALLQKVRAEIASKEKEEEEMMEKPQKE 195

Query:   120 SKEDQ----QLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSN-DIPT 174
             +K+D+    ++ F+T + ++VY+ + K +   + NE+FLPGRM+++ + +  Y++ DIPT
Sbjct:   196 TKKDEDPENKIEFKTRLGRNVYRMLFKSKAYER-NELFLPGRMAYVVDLDDEYADTDIPT 254

Query:   175 TLHRSKADCPVPDEMVTVSVDGSVLDRIAKIMTYLRLGS 213
             TL RSKADCP  +   T++ +  V+ ++ +I++YLR G+
Sbjct:   255 TLIRSKADCPTMEAQTTLTTNDIVISKLTQILSYLRQGT 293

GO:0005634 "nucleus" evidence=IEA

MGI|MGI:1345142 Ik "IK cytokine" [Mus musculus (taxid:10090)]

 Score = 415 (151.1 bits), Expect = 3.8e-60, Sum P(2) = 3.8e-60
 Identities = 89/219 (40%), Positives = 139/219 (63%)

Query:     5 KKYYKEKIARRXXXXXXXXXXXXYRDRAKERREDQNPDYEPTEL----GSFHAVAPPGNV 60
             KK Y  K+ R+            YRDRAKERR+  N DYE TEL     ++ AV P    
Sbjct:    77 KKSYYAKL-RQQEIERERELAEKYRDRAKERRDGVNKDYEETELISTTANYRAVGPTAEA 135

Query:    61 DLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGK-SRT 119
             D   A+ ++  I++SK+LGGD+EHTHLVKGLD+ALL KVR+EI  K    ++   K  + 
Sbjct:   136 DKSAAEKRRQLIQESKFLGGDMEHTHLVKGLDFALLQKVRAEIASKEKEEEELMEKPQKE 195

Query:   120 SKEDQ----QLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSN-DIPT 174
             +K+D+    ++ F+T + ++VY+ + K ++  + NE+FLPGRM+++ + +  Y++ DIPT
Sbjct:   196 TKKDEDPENKIEFKTRLGRNVYRMLFKSKSYER-NELFLPGRMAYVVDLDDEYADTDIPT 254

Query:   175 TLHRSKADCPVPDEMVTVSVDGSVLDRIAKIMTYLRLGS 213
             TL RSKADCP  +   T++ +  V+ ++ +I++YLR G+
Sbjct:   255 TLIRSKADCPTMEAQTTLTTNDIVISKLTQILSYLRQGT 293

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	569
pfam07808	238	pfam07808, RED_N, RED-like protein N-terminal regi	3e-70
pfam07807	118	pfam07807, RED_C, RED-like protein C-terminal regi	5e-49

>gnl|CDD|219589 pfam07808, RED_N, RED-like protein N-terminal region

 Score =  225 bits (576), Expect = 3e-70
 Identities = 106/239 (44%), Positives = 157/239 (65%), Gaps = 21/239 (8%)

Query: 5   KKYYKEKIARRKDEKPEEPEQPKYRDRAKERREDQNPDYEPTELGSFHAVAPPGNVDLRL 64
           KK  K    R+++E  E+   PKYRDRA+ERR+  N DY+P+ L ++ AVAP    D+  
Sbjct: 1   KKKKKYAYLRKQEENAEKEINPKYRDRARERRKGINKDYDPSSLAAYRAVAPDAKSDIDA 60

Query: 65  ADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGKSRTSKE-- 122
           A+ +  +I++SK+LGGDVEHTHLVKGLD+ALLNKVRSE+ KK D  ++   K   SKE  
Sbjct: 61  AENRNNTIDESKFLGGDVEHTHLVKGLDFALLNKVRSELIKKEDEEEEGKDKVNQSKEKY 120

Query: 123 ---------------DQQLSFRTAMAKSVYQWI--VKPQTVMKTNEMFLPGRMSFIFNTE 165
                          + +++F+T + K++++     + Q ++  NE+F PGRM+++F+ +
Sbjct: 121 LPSQAQNLTEKRAESESKITFKTELGKNIFKQFQLQESQKIIN-NELFAPGRMAYVFDLD 179

Query: 166 GGYS-NDIPTTLHRSKADCPVPDEMVTVSVDGSVLDRIAKIMTYLRLGSSGKVLKKKKK 223
                NDIPTTL RSKADCPV +E VT++ + SVL+++ +I++YLR G+S K  KKKKK
Sbjct: 180 DEIDENDIPTTLIRSKADCPVIEEDVTLTTNNSVLNKLTQILSYLRAGTSNKENKKKKK 238

This family contains sequences that are similar to the N-terminal region of Red protein. This and related proteins contain a RED repeat which consists of a number of RE and RD sequence elements. The region in question has several conserved NLS sequences and a putative trimeric coiled-coil region, suggesting that these proteins are expressed in the nucleus. The function of Red protein is unknown, but efficient sequestration to nuclear bodies suggests that its expression may be tightly regulated of that the protein self-aggregates extremely efficiently. Length = 238

>gnl|CDD|203768 pfam07807, RED_C, RED-like protein C-terminal region

 Score =  165 bits (419), Expect = 5e-49
 Identities = 85/125 (68%), Positives = 97/125 (77%), Gaps = 11/125 (8%)

Query: 447 YSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKGRLHRWDFETEEEWATYNEQKEAMPK 506
           Y+ECYPGY EYN EIVDSDDE D SKMD+G + KG L RWDFETEEE++ Y EQKEA+PK
Sbjct: 1   YAECYPGYLEYNDEIVDSDDEADYSKMDLGNK-KGPLGRWDFETEEEYSDYMEQKEALPK 59

Query: 507 AAFQFGVKMQDGRKTRKQN-KDQK--LTNELHKINKILARKKMEKDTNGEGGHYDDDVQP 563
           AAFQ+GVKMQDGRKTRKQ  KD+K  L  EL KINKILA++KMEKD  G GG  D     
Sbjct: 60  AAFQYGVKMQDGRKTRKQGPKDEKAELDRELQKINKILAKRKMEKD--GGGGGPD----- 112

Query: 564 GKKPR 568
            K+P+
Sbjct: 113 VKRPK 117

This family contains sequences that are similar to the C-terminal region of Red protein. This and related proteins are thought to be localised to the nucleus, and contain a RED repeat which consists of a number of RE and RD sequence elements. The region in question has several conserved NLS sequences. The function of Red protein is unknown, but efficient sequestration to nuclear bodies suggests that its expression may be tightly regulated or that the protein self-aggregates extremely efficiently. Length = 118

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	569
KOG2498	544	consensus IK cytokine down-regulator of HLA class	100.0
PF07808	238	RED_N: RED-like protein N-terminal region; InterPr	100.0
PF07807	118	RED_C: RED-like protein C-terminal region; InterPr	100.0
KOG2498	544	consensus IK cytokine down-regulator of HLA class	99.88

>KOG2498 consensus IK cytokine down-regulator of HLA class II [Signal transduction mechanisms]

Probab=100.00  E-value=2.1e-117  Score=927.58  Aligned_cols=451  Identities=47%  Similarity=0.732  Sum_probs=389.2

Q ss_pred             ccchhhHHhhhccccCCCCCCCCCCcchhHHhhhccCCCCCcccccc---cccccCCCCCcchHHHHHhhhhhhhhhhcC
Q 008338            3 SGKKYYKEKIARRKDEKPEEPEQPKYRDRAKERREDQNPDYEPTELG---SFHAVAPPGNVDLRLADAQKLSIEKSKYLG   79 (569)
Q Consensus         3 ~~kk~~~~kl~~~e~~k~~E~~~~~YrDRA~ERR~g~~~D~~~~~~~---~~~a~~~~~~~d~~~~e~~~~~ieesk~~g   79 (569)
                      .++|+||+++++++.+++.| .+.+|||||+|||+|+|.||..+++.   ++.+|.+....+...++.|+|+|++|+|||
T Consensus        65 e~~kal~~~~k~~h~~k~de-a~lkyRdra~errdg~~~D~~~~~~pst~qyrav~~~a~k~~~q~i~rrq~I~eSKfLG  143 (544)
T KOG2498|consen   65 EKKKALYGKLKKQHIEKEDE-AALKYRDRAAERRDGVNKDYEETELPSTAQYRAVGPDAEKDKDQAIKRRQLIQESKFLG  143 (544)
T ss_pred             hhhHHHHHHHHHHHHHHHHH-HHHHHHHHHhhccCCcCCCcccccCcchhhhhhhcchhhhhhHHHHHHHHHHHHhhhcC
Confidence            47899999999999999666 46779999999999999999987643   589999988888888999999999999999


Q ss_pred             CCccccccccchhHHHHHHHhhhhccCCCCCCCCCCCc-----cccccchhhhHhhH-----------HHHhhHhhhhcc
Q 008338           80 GDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGKS-----RTSKEDQQLSFRTA-----------MAKSVYQWIVKP  143 (569)
Q Consensus        80 gd~~~t~lvkgld~~ll~~~r~~~~~~~~~ede~~~~~-----~~~k~d~d~~F~t~-----------~gr~Vy~~i~k~  143 (569)
                      |||+||||||||||+||++||.+|.....++++..+..     .+......++|.++           |+|+||..||++
T Consensus       144 GDm~hTHLVkGLD~~LL~KVRse~~a~d~~~ee~~~~~vdE~~sa~~~~~kiea~~r~~e~~~~~~~~~~r~~~~~l~~n  223 (544)
T KOG2498|consen  144 GDMEHTHLVKGLDYALLQKVRSEIAAKDDEEEELMEKPVDEKKSAEDPEEKIEAELRLGESGKVLKKKLGRNVYRVLFKN  223 (544)
T ss_pred             CccceeeeecchhHHHHHHHHHHhhccCCchHHHhhhhccccccccchHHHHHHHHhhchhhhhhhhhhcchhhhHhhhc
Confidence            99999999999999999999999998876655542221     11112234566555           899999999998


Q ss_pred             cccccccccCCCCceEEEEecCCCCC-CCcchhhhhcccCCCC-CccccccccchhHHHHHHHHHHHHhcCCCcch-hhh
Q 008338          144 QTVMKTNEMFLPGRMSFIFNTEGGYS-NDIPTTLHRSKADCPV-PDEMVTVSVDGSVLDRIAKIMTYLRLGSSGKV-LKK  220 (569)
Q Consensus       144 k~~~k~ne~FlPGRMaYvfdLe~e~~-~DIPTTL~RSKaDcp~-~ee~~~~~~~~~vi~Kl~kImSylR~G~~gK~-~KK  220 (569)
                      + ...+|++|+||||+||++|+++.. .+|||||.||++|||. +++..++++|++||.+|.+|+||||.|.+.|+ ++|
T Consensus       224 ~-~~~~n~Lf~~GrmaYVviLddE~~~tdiPttL~rs~~dlp~~~E~~~tl~tnd~~I~kls~vls~lr~~~~~kK~~~k  302 (544)
T KOG2498|consen  224 K-EDERNELFAPGRMAYVVILDDEVLETDIPTTLGRSKLDLPTKQEEPPTLTTNDIVIFKLSQVLSYLRAGDRNKKPLKK  302 (544)
T ss_pred             c-ccccccccCCCCcceeeeccccccCCCCCcccccccccccchhccccccccccHHHhhhhhhhhhhccCCcccCcccc
Confidence            6 478999999999999999999977 9999999999999999 78889999999999999999999999997776 666


Q ss_pred             hhhhhccccCCcccccccccccccCCCCCCCCCCCCCcccccCCCCCCCCCCCCcccccccCCCcCCCCCCCcccCCCcc
Q 008338          221 KKKERDVKVTGKTSTVVNEYDEEDKPSKANSGIPNGKTEKEILPPPPPPPKKNHVDSREKQGPIVARSEEDDIFVGAGTD  300 (569)
Q Consensus       221 kkkerd~~~~Gr~~~~~~d~~~~~k~~k~~g~~~~~~~~~~~lp~~~~~p~~~~~~~~~k~~~~~~~~~dddIF~d~G~D  300 (569)
                      |.+.+ ..                                 .    .+                 +...+.+||.++| |
T Consensus       303 rDk~k-~~---------------------------------~----~~-----------------P~~~~~~iy~~~g-~  326 (544)
T KOG2498|consen  303 RDKPK-LY---------------------------------F----DK-----------------PVEGEKVIYEDEG-D  326 (544)
T ss_pred             ccccc-cc---------------------------------c----cC-----------------ccccccccccccc-c
Confidence            65553 11                                 0    00                 1245889998777 9


Q ss_pred             ccCCCCCCCCCCCccccccCcccccccCCCCcCCCCCCCCCCCCccccccCcchHHHHHHhhcCCcccchhhHHHhhhcc
Q 008338          301 YTVPGKDMNQSPVSEDMEESPRNKEKVSYFSESVYGPVPPAEPPLAWQDTNGYDAMQAQALAGGYQGEWQDYQYAEQLAY  380 (569)
Q Consensus       301 Y~vP~~~~~~s~~sed~~~s~~~~~r~sYF~~p~~~p~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~  380 (569)
                      | ||....+                                  .+.|+... |++++.+++..++..+|+.|+++    |
T Consensus       327 Y-~P~~~s~----------------------------------~~~~~~ks-~~a~qdrg~d~~~d~e~~~~rd~----~  366 (544)
T KOG2498|consen  327 Y-VPSTPSA----------------------------------GSRDQGKS-YGAMQDRGRDRGRDRERQRYRDA----N  366 (544)
T ss_pred             c-cCCCCCC----------------------------------Cccccccc-cchhhhcccCCCCcchhhhhhhh----h
Confidence            9 8853111                                  12344433 78888889999999999999986    6


Q ss_pred             ccccccchhhhhhhhhcCCCCCCCccccHHHHhhccCCcccchHHHHHHHHHhhhhccCCCCCCCccccccCChhhhhhc
Q 008338          381 PEQYLQPDMQTYEMQAGLNMPQDPRFMTQEEKDRGLGSVFKRDDQRLLQLREKDAREKDPNFISESYSECYPGYQEYNRE  460 (569)
Q Consensus       381 ~~q~~~~~~~~~~~~~~~~~~~~p~~~~q~~~~~gl~s~f~rdd~~~~~~re~~~rekdp~f~~dsYAECYPG~~e~~~~  460 (569)
                      .++|+++++.+|....-   ..+|..|+++++++|++++|.+++|+  |+++-.++++||-|+|+||+|||||++|||++
T Consensus       367 r~r~lep~~~~~~~~~~---~l~p~q~skEe~~~~~~~~~~~~~~~--~~~eerkk~kd~~~vsegY~ECYPgl~em~he  441 (544)
T KOG2498|consen  367 RDRYLEPGKEGYSYFEE---LLDPQQMSKEEKDRGLGIVSIREDQR--QKPEERKKEKDPFFVSEGYAECYPGLQEMNHE  441 (544)
T ss_pred             hhhhhccccccchhhhh---hcchhhhhhccccccccccccchhhh--hchhhHhhhccccccccchhhhccchhhhccc
Confidence            67889888888876542   46799999999999999999999988  88999999999999999999999999999999


Q ss_pred             ccCCCcccccccccCCCCCCCCcccccCcCHHHHHHhhHhhhhchhhHHhhcccccccccccccc--hhhHhHHHHHHHH
Q 008338          461 IVDSDDEDDLSKMDMGGRAKGRLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQN--KDQKLTNELHKIN  538 (569)
Q Consensus       461 i~DSDDE~D~sKMD~G~~~KG~~~RWDFdTeEEy~~Ym~~KEAlPKAAFQyGVKm~DGRKTRK~n--~d~kLdre~~KI~  538 (569)
                      |||||||+||||||||| |||+||||||||||||++||++||||||||||||||||||||||||+  .+|+|||||||||
T Consensus       442 i~~SDeE~DysKMD~Gg-Kk~~l~RWDFdTeEEy~~Yme~kEAlPKAAfQyGvKm~dGRKtrkq~~~~~~~Ldre~~~In  520 (544)
T KOG2498|consen  442 IVDSDEEVDYSKMDMGG-KKGPLGRWDFDTEEEYSKYMEQKEALPKAAFQYGVKMQDGRKTRKQKRNDKAELDRELHKIN  520 (544)
T ss_pred             ccccccccchhhhhccC-CCCCccccCcccHHHHHHHhhhhhhchHHHHHhcccccccchhhhcccchHHHHHHHHHHHH
Confidence            99999999999999999 79999999999999999999999999999999999999999999984  7899999999999


Q ss_pred             HHHHhhhcccCCCCCCCCc
Q 008338          539 KILARKKMEKDTNGEGGHY  557 (569)
Q Consensus       539 ~Il~krK~~~~~~~~~~~~  557 (569)
                      +||.|||++++||++|+.|
T Consensus       521 kIi~krK~~~~ggggg~e~  539 (544)
T KOG2498|consen  521 KIITKRKMEKDGGGGGAEY  539 (544)
T ss_pred             HHHHHhhccccCCCCcccc
Confidence            9999999999999888433

>PF07808 RED_N: RED-like protein N-terminal region; InterPro: IPR012916 This domain contains sequences that are similar to the N-terminal region of Red protein (Q13123 from SWISSPROT)

Probab=100.00  E-value=1.3e-62  Score=484.92  Aligned_cols=218  Identities=46%  Similarity=0.807  Sum_probs=193.0

Q ss_pred             cchhhHHhhhccccCCCCCCCCCCcchhHHhhhccCCCCCcccccccccccCCCCCcchHHHHHhhhhhhhhhhcCCCcc
Q 008338            4 GKKYYKEKIARRKDEKPEEPEQPKYRDRAKERREDQNPDYEPTELGSFHAVAPPGNVDLRLADAQKLSIEKSKYLGGDVE   83 (569)
Q Consensus         4 ~kk~~~~kl~~~e~~k~~E~~~~~YrDRA~ERR~g~~~D~~~~~~~~~~a~~~~~~~d~~~~e~~~~~ieesk~~ggd~~   83 (569)
                      |||+|++++++++..+..+ ++++|||||+|||+|.++||..+++..|+++.+.+.++..+++.++++|++|+|||||++
T Consensus         1 Kkk~~~~~~~~~~~~~~~~-~~~~YrDRA~eRR~~~~~d~~~~~~~~~~a~~~~~~~~~~~~e~~~~~i~esk~lGGD~~   79 (238)
T PF07808_consen    1 KKKKKYKKLKKQEEPKGKK-LAPGYRDRAKERREGENDDYEEAELSALRALEPDVKLDQETAERRRQLIEESKYLGGDLE   79 (238)
T ss_pred             CCchhhhhHHhhhcccccc-cccchhhHHHHHHcccCcchhhhHHHHHHHhhhhcccchhhHHHHHHHHHHHhhccCCcc
Confidence            7899999999999998887 699999999999999999999988888999999999999999999999999999999999


Q ss_pred             ccccccchhHHHHHHHhhhhccCCCCCCCCCCC---c--------------cccccchhhhHhhHHHHhhHhhh--hccc
Q 008338           84 HTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGK---S--------------RTSKEDQQLSFRTAMAKSVYQWI--VKPQ  144 (569)
Q Consensus        84 ~t~lvkgld~~ll~~~r~~~~~~~~~ede~~~~---~--------------~~~k~d~d~~F~t~~gr~Vy~~i--~k~k  144 (569)
                      ||||||||||+||+|||++|..+..++++..+.   +              ........+.|.|.++++||+++  ++++
T Consensus        80 ~THLVKGLD~~LL~kvR~ei~~~~~~~~~~~e~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~I~~~~~~~~~~  159 (238)
T PF07808_consen   80 HTHLVKGLDFALLEKVRAEIAKKEKEEEEEEEKVEEEEEQELDEEEEELEEKEKESEEEIEFKTKLARNIFKTLFQFKSK  159 (238)
T ss_pred             ccchhhhhcHHHHHHHHHHHhcccccchhHHHhhhhhhhhhcchhhhhhhhhhcccccchhHhhHHHHHHHHHHHhcccc
Confidence            999999999999999999998876554431100   0              01123457999999999999999  4554


Q ss_pred             ccccccccCCCCceEEEEecCCCC-CCCcchhhhhcccCCCCCccccccccchhHHHHHHHHHHHHhcCCCcchhhhhhh
Q 008338          145 TVMKTNEMFLPGRMSFIFNTEGGY-SNDIPTTLHRSKADCPVPDEMVTVSVDGSVLDRIAKIMTYLRLGSSGKVLKKKKK  223 (569)
Q Consensus       145 ~~~k~ne~FlPGRMaYvfdLe~e~-~~DIPTTL~RSKaDcp~~ee~~~~~~~~~vi~Kl~kImSylR~G~~gK~~KKkkk  223 (569)
                      . ..+|++|+||||||||||++++ .+||||||+|||+|||.+++++++++|++||+||+|||||||+|+++|++|||++
T Consensus       160 ~-~~~nelF~pGRMaYvfdL~~e~~~~DIPTTliRSK~Dcp~~~~~~t~~~n~~vi~kL~qilsylr~g~~~kk~KKk~k  238 (238)
T PF07808_consen  160 K-IERNELFLPGRMAYVFDLDDEYAESDIPTTLIRSKADCPVPEEQVTLTTNDIVINKLTQILSYLRQGSRHKKNKKKKK  238 (238)
T ss_pred             c-cccccccCCcceEEEEecCCCcccccCCCeeecchhhCccchheeccccchHHHHHHHHHHHHHhcccchhhhhccCC
Confidence            4 5679999999999999999998 5999999999999999999999999999999999999999999999998888754

This and related proteins contain a RED repeat which consists of a number of RE and RD sequence elements []. The region in question has several conserved NLS sequences and a putative trimeric coiled-coil region [], suggesting that these proteins are expressed in the nucleus []. The function of Red protein is unknown, but efficient sequestration to nuclear bodies suggests that its expression may be tightly regulated, or that the protein self-aggregates extremely efficiently []. ; GO: 0005634 nucleus

>PF07807 RED_C: RED-like protein C-terminal region; InterPro: IPR012492 This family contains sequences that are similar to the C-terminal region of Red protein (Q13123 from SWISSPROT)

Probab=100.00  E-value=1.8e-58  Score=410.42  Aligned_cols=107  Identities=68%  Similarity=1.103  Sum_probs=101.6

Q ss_pred             cccccCChhhhhhcccCCCcccccccccCCCCCCCCcccccCcCHHHHHHhhHhhhhchhhHHhhccccccccccccc--
Q 008338          447 YSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKGRLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQ--  524 (569)
Q Consensus       447 YAECYPG~~e~~~~i~DSDDE~D~sKMD~G~~~KG~~~RWDFdTeEEy~~Ym~~KEAlPKAAFQyGVKm~DGRKTRK~--  524 (569)
                      |||||||++|||++++|||||+||||||||| +||||+||||+|+|||++||++|||||||||||||||+|||||||+  
T Consensus         1 YAECYPg~~e~~~~~~DSDdE~D~skMD~G~-kkg~~~RwDFdT~EEy~~Y~~~kEalPKAAfQyGvKm~dGrKtrk~~~   79 (118)
T PF07807_consen    1 YAECYPGYMEYNDAIVDSDDEVDYSKMDMGN-KKGPLGRWDFDTEEEYSKYMEQKEALPKAAFQYGVKMADGRKTRKQGE   79 (118)
T ss_pred             CccccccHHHHhccccCCchhhHHhhhcccc-cCCCcccCCCCCHHHHHHHHhhhhhCcHHHHHhccccccccccccccc
Confidence            9999999999999999999999999999999 5999999999999999999999999999999999999999999996  


Q ss_pred             -chhhHhHHHHHHHHHHHHhhhcccCCCCCC
Q 008338          525 -NKDQKLTNELHKINKILARKKMEKDTNGEG  554 (569)
Q Consensus       525 -n~d~kLdre~~KI~~Il~krK~~~~~~~~~  554 (569)
                       +++++|||||++|++||++||++++++..+
T Consensus        80 k~ek~kLdre~~kI~~Il~krk~~~~g~~~~  110 (118)
T PF07807_consen   80 KDEKAKLDREWQKIQKILKKRKAEKDGGGGG  110 (118)
T ss_pred             hhHHHHHhHHHHHHHHHHHHhcccCCCCCCC
Confidence             467889999999999999999888766544

This and related proteins are thought to be localised to the nucleus, and contain a RED repeat which consists of a number of RE and RD sequence elements []. The region in question has several conserved NLS sequences []. The function of Red protein is unknown, but efficient sequestration to nuclear bodies suggests that its expression may be tightly regulated or that the protein self-aggregates extremely efficiently [].

>KOG2498 consensus IK cytokine down-regulator of HLA class II [Signal transduction mechanisms]

Probab=99.88  E-value=2.5e-23  Score=220.33  Aligned_cols=303  Identities=25%  Similarity=0.250  Sum_probs=246.5

Q ss_pred             CCCCCCCCCCcchhHHhhhccCCCCCcccccccccccCCCCCcchHHHHHhhhhhhhhhhcCCCccccccccchhHHHHH
Q 008338           18 EKPEEPEQPKYRDRAKERREDQNPDYEPTELGSFHAVAPPGNVDLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLN   97 (569)
Q Consensus        18 ~k~~E~~~~~YrDRA~ERR~g~~~D~~~~~~~~~~a~~~~~~~d~~~~e~~~~~ieesk~~ggd~~~t~lvkgld~~ll~   97 (569)
                      +++.+..-.+|+++++++|. .|++|+....++++..++.+-.+......+  +++.+++|+|++.++|+|| ||+++|.
T Consensus        13 ~kL~ndDFRKLL~tpra~~p-a~~~~a~p~~ss~~~~~p~~~~~~~~~~Ar--~~e~~kal~~~~k~~h~~k-~dea~lk   88 (544)
T KOG2498|consen   13 SKLTNDDFRKLLATPRAARP-ANPTSAPPSKSSFHHEMPREYKEDEDKAAR--SREKKKALYGKLKKQHIEK-EDEAALK   88 (544)
T ss_pred             hhcccchhHHHhcCcccCCC-CCcccCCcccCcccccCChhhhccccchhh--hhhhhHHHHHHHHHHHHHH-HHHHHHH
Confidence            44555556899999999998 689999988889999998877766554444  6788999999999999999 9999998


Q ss_pred             HHhhhhccCCCCCCCCCCCccccccchhhhHhhHHHHhhHhhhhcccccccccccCCCCceEEEEecCCCCCCCcchhhh
Q 008338           98 KVRSEIDKKPDAGDDTDGKSRTSKEDQQLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSNDIPTTLH  177 (569)
Q Consensus        98 ~~r~~~~~~~~~ede~~~~~~~~k~d~d~~F~t~~gr~Vy~~i~k~k~~~k~ne~FlPGRMaYvfdLe~e~~~DIPTTL~  177 (569)
                       +|.++.......+...+....+.+.+.+.|.+.+.+.+++++.+.+. +..+ +||+|+|.++..+..-....|++++.
T Consensus        89 -yRdra~errdg~~~D~~~~~~pst~qyrav~~~a~k~~~q~i~rrq~-I~eS-KfLGGDm~hTHLVkGLD~~LL~KVRs  165 (544)
T KOG2498|consen   89 -YRDRAAERRDGVNKDYEETELPSTAQYRAVGPDAEKDKDQAIKRRQL-IQES-KFLGGDMEHTHLVKGLDYALLQKVRS  165 (544)
T ss_pred             -HHHHHhhccCCcCCCcccccCcchhhhhhhcchhhhhhHHHHHHHHH-HHHh-hhcCCccceeeeecchhHHHHHHHHH
Confidence             77777666554333322333456778899999999999999998875 3344 99999999999999888899999999


Q ss_pred             hcccCCCCCccccccccch--hHHHHHHHHHHHHhcCCCcchhhhhhhhhccccCCcccccccccccccCCCCCCCCCCC
Q 008338          178 RSKADCPVPDEMVTVSVDG--SVLDRIAKIMTYLRLGSSGKVLKKKKKERDVKVTGKTSTVVNEYDEEDKPSKANSGIPN  255 (569)
Q Consensus       178 RSKaDcp~~ee~~~~~~~~--~vi~Kl~kImSylR~G~~gK~~KKkkkerd~~~~Gr~~~~~~d~~~~~k~~k~~g~~~~  255 (569)
                      ++.+.|+..++.++..+++  ++.+.+.+|+++||+|..++.++ ++..++..    .+++-++++++..-......+..
T Consensus       166 e~~a~d~~~ee~~~~~vdE~~sa~~~~~kiea~~r~~e~~~~~~-~~~~r~~~----~~l~~n~~~~~n~Lf~~GrmaYV  240 (544)
T KOG2498|consen  166 EIAAKDDEEEELMEKPVDEKKSAEDPEEKIEAELRLGESGKVLK-KKLGRNVY----RVLFKNKEDERNELFAPGRMAYV  240 (544)
T ss_pred             HhhccCCchHHHhhhhccccccccchHHHHHHHHhhchhhhhhh-hhhcchhh----hHhhhccccccccccCCCCccee
Confidence            9999999999988999999  99999999999999999999999 56676533    56677888888877777778888


Q ss_pred             CCcccccCCCCCCC-CCCCCcc-cccccCCCcCCCCCCCcccCCCccccCCCCCCCCCCCccccccCcccccccCCCCcC
Q 008338          256 GKTEKEILPPPPPP-PKKNHVD-SREKQGPIVARSEEDDIFVGAGTDYTVPGKDMNQSPVSEDMEESPRNKEKVSYFSES  333 (569)
Q Consensus       256 ~~~~~~~lp~~~~~-p~~~~~~-~~~k~~~~~~~~~dddIF~d~G~DY~vP~~~~~~s~~sed~~~s~~~~~r~sYF~~p  333 (569)
                      ...+.+++|++.|. +.-+..+ .+..+.+++....|+.||...+++|.++..+..+++      .+.|++.+ +||..|
T Consensus       241 viLddE~~~tdiPttL~rs~~dlp~~~E~~~tl~tnd~~I~kls~vls~lr~~~~~kK~------~~krDk~k-~~~~~P  313 (544)
T KOG2498|consen  241 VILDDEVLETDIPTTLGRSKLDLPTKQEEPPTLTTNDIVIFKLSQVLSYLRAGDRNKKP------LKKRDKPK-LYFDKP  313 (544)
T ss_pred             eeccccccCCCCCcccccccccccchhccccccccccHHHhhhhhhhhhhccCCcccCc------cccccccc-ccccCc
Confidence            99999999766664 4455556 887888888999999999999999989988777764      34556666 888887


Q ss_pred             CCCCCC
Q 008338          334 VYGPVP  339 (569)
Q Consensus       334 ~~~p~p  339 (569)
                      +++--.
T Consensus       314 ~~~~~~  319 (544)
T KOG2498|consen  314 VEGEKV  319 (544)
T ss_pred             cccccc
Confidence            766443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	569
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 7e-06
 Identities = 86/536 (16%), Positives = 156/536 (29%), Gaps = 164/536 (30%)

Query: 21  EEPEQPKYR---DRAKERREDQNPDYEPTELGSFHAVAPPGNVDLRLADAQKLSIEKSKY 77
           EE  +  Y+      K   E + P                   D    D Q  +    KY
Sbjct: 84  EEVLRINYKFLMSPIKT--EQRQPSMMTRMYIEQR--------DRLYNDNQVFA----KY 129

Query: 78  LGGDVEHTHLVKGLDYALLNKVRSE----IDKKPDAGDDTDGKS-------RTSKEDQQL 126
              +V        L  ALL ++R      ID     G    GK+        + K   ++
Sbjct: 130 ---NVSRLQPYLKLRQALL-ELRPAKNVLID-----GVLGSGKTWVALDVCLSYKVQCKM 180

Query: 127 SFRTAMAKSVYQWI-----VKPQTVMKTNEMFLPGRMSFIFNTEGGYSNDIPTTLHRSK- 180
            F+      ++ W+       P+TV++  +  L  ++   + +   +S++I   +H  + 
Sbjct: 181 DFK------IF-WLNLKNCNSPETVLEMLQKLLY-QIDPNWTSRSDHSSNIKLRIHSIQA 232

Query: 181 ------ADCPVPDEMVTVSVDGSVLDRI--AKIMTYLRLGSSGKVLKKKKKERDVKVTGK 232
                    P  + ++       VL  +  AK      L    K+L          +T +
Sbjct: 233 ELRRLLKSKPYENCLL-------VLLNVQNAKAWNAFNLSC--KIL----------LTTR 273

Query: 233 TSTVVNEYDEEDKPSKANSGIPNGKTEKEIL---------PPP--PPPPKKNHVDSREKQ 281
              V +          +        T  E+           P   P      +       
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN------- 326

Query: 282 GP----IVARSEEDDIFVGAGTDYTVPGKDMNQSPVSEDMEES-----P----RNKEKVS 328
            P    I+A S  D +   A  D     K +N   ++  +E S     P    +  +++S
Sbjct: 327 -PRRLSIIAESIRDGL---ATWDNW---KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379

Query: 329 YFSESVYGPVPPAEPPLAWQDTNGYDAMQ------AQALAGGYQGEWQDYQY-------- 374
            F  S    +P     L W D    D M         +L    + + ++           
Sbjct: 380 VFPPSA--HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV---EKQPKESTISIPSIYLE 434

Query: 375 ----AEQLAYP-----EQYLQPDMQTYEMQAGLNMPQDPRF----------MTQEEKDRG 415
                E          + Y  P  +T++    +    D  F          +   E+   
Sbjct: 435 LKVKLENEYALHRSIVDHYNIP--KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492

Query: 416 LGSVFKRDDQRLLQ--LREKDAREKDPNFISESYSECYPGYQEYNREIVDSDDEDD 469
              VF   D R L+  +R           I  +  +     + Y   I D+D + +
Sbjct: 493 FRMVFL--DFRFLEQKIRHDSTAWNASGSILNTLQQ----LKFYKPYICDNDPKYE 542

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00