Citrus Sinensis ID: 008357

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------57
MKSELGVFDFKEEDELPELEAGKFLGKFKNPNNDDSPALKRELLECVTKETIVQIEGIGNVPCVNADAVDCAPSCNVDCAPSCNEQMCAPMKIGGEEGNDIRAPQMNSTSCEQSPNLEKDNCGFESCISELASRDLCTKGPLLGESQLCSGNLDPPSNNEPVDVNSDADGSMSEGSSSSPASDIAPNGVSLNGHMSDQWVDDSEVDDINMGVVVSPDYVFFRDKFCLGYLVVFSCTGIKIKDSNACGVQESFTFEKGIDDIVDIKFQWLQRFGSVEVKLHVILNDVAQDDNACGTSGIEELKFSFSDCNWSEQLEKITSLNAKYLALWSVDHDNPVDMDGVGQRRYFPNFDEPFEDVVYPEGDSDAVSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKHRFHFFNSFFFRKLADLDKDPSSISDGKAAFLRVRKWTRKVDIFGKDYIFIPVNFNLHWSLIVICHPGDVASFKVEDLKRSEKVPCILHMDSIKGTHAGLKNLVQSYLCEEWKERHKDTSEDVSSKFLNFRFIPLEVLKLILHFWGSLKWGYKMEFPLKLCIAS
ccccccccccccccccHHHHHHccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccEEEccccccccEEEEccccEEEccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccEEccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccEEccccccccEEEEHHHHccccccccccHHHHHHHHHHHHHHHHHHccccEEEEccHHHHHccccccccccccHHHHHHHHHHHHHcccccccccEEEEcccccccEEEEEEEccccccccHHHcccccccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHccccccccccccccc
cccccEEEEcccHcccHHHHHHHHHHHcccccccccccccccEEEEEEcccEEEEcccccccccEcccccccccccccccccccccccccEEEEccccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccEEEEEccEccccEEEEEcccEEEEccccccccccEEEEEcHHHHEEEcHHHHHHccEEEEEEEEEEcccccccccccccccEEEEEEEEcccccHHHHHHHcccccHHHHHcccccccccccccccccccccccHHHHHHcccccccccEEEEHHHHHHccccccccHHHHHHHHHHHHHHccccccccEEEEEccHHHHHHcccccccccHHHHHHHHHHHHHccccccccccEEEEEcccccEEEEEEEEccccccccccccccccccccEEEEEEccccccHHHHHHHHHHHHHHHHHHcccccccccccEcccccccHHccccEEEEEEEcccccEEEEccEEEEcc
mkselgvfdfkeedelpeleagkflgkfknpnnddspALKRELLECVTKETIVQIegignvpcvnadavdcapscnvdcapscneqmcapmkiggeegndirapqmnstsceqspnlekdncgfesCISELASrdlctkgpllgesqlcsgnldppsnnepvdvnsdadgsmsegsssspasdiapngvslnghmsdqwvddsevddinmgvvvspdyvffrdkfclGYLVVFSctgikikdsnacgvqesftfekgiDDIVDIKFQWLQRFGSVEVKLHVILNDvaqddnacgtsgieelkfsfsdcnwsEQLEKITSLNAKYLALWsvdhdnpvdmdgvgqrryfpnfdepfedvvypegdsdavsiskrdidllqpdtfvndTIIDFYIKYLKNQIQAEEKhrfhffnsfffrkladldkdpssisdgKAAFLRVRKWTRKVdifgkdyifipvnfnLHWSLIVIchpgdvasfkvedlkrsekvpcilhmdsikgtHAGLKNLVQSYLCEEWKerhkdtsedvsskflnfrfIPLEVLKLILHFWGslkwgykmefplklcias
mkselgvfdfkeedelpeleagkflgkfknpnnddsPALKRELLECVTKETIVQIEGIGNVPCVNADAVDCAPSCNVDCAPSCNEQMCAPMKIGGEEGNDIRAPQMNSTSCEQSPNLEKDNCGFESCISELASRDLCTKGPLLGESQLCSGNLDPPSNNEPVDVNSDADGSMSEGSSSSPASDIAPNGVSLNGHMSDQWVDDSEVDDINMGVVVSPDYVFFRDKFCLGYLVVFSCTGIKIKDSNACGVQESFTFEKGIDDIVDIKFQWLQRFGSVEVKLHVILNDVAQDDNACGTSGIEELKFSFSDCNWSEQLEKITSLNAKYLALWSVDHDNPVDMDGVGQRRYFPNFDEPFEDVVYPEGDSDAVSISkrdidllqpdtfVNDTIIDFYIKYLKNQIQAEEKHRFHFFNSFFFRKLADLDKDPSSISDGKAAFLRVRKWTRKVDIFGKDYIFIPVNFNLHWSLIVICHPGDVASFKVEDLKRSEKVPCILHMDSIKGTHAGLKNLVQSYLCEEWKERHkdtsedvsskfLNFRFIPLEVLKLILHFWGSLKWGYKMEFPLKLCIAS
MKSELGVFDFKEEDELPELEAGKFLGKFKNPNNDDSPALKRELLECVTKETIVQIEGIGNVPCVNADAVDCAPSCNVDCAPSCNEQMCAPMKIGGEEGNDIRAPQMNSTSCEQSPNLEKDNCGFESCISELASRDLCTKGPLLGESQLCSGNLDPPSNNEPVDVNsdadgsmsegsssspasdIAPNGVSLNGHMSDQWVDDSEVDDINMGVVVSPDYVFFRDKFCLGYLVVFSCTGIKIKDSNACGVQESFTFEKGIDDIVDIKFQWLQRFGSVEVKLHVILNDVAQDDNACGTSGIEELKFSFSDCNWSEQLEKITSLNAKYLALWSVDHDNPVDMDGVGQRRYFPNFDEPFEDVVYPEGDSDAVSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKhrfhffnsfffrKLADLDKDPSSISDGKAAFLRVRKWTRKVDIFGKDYIFIPVNFNLHWSLIVICHPGDVASFKVEDLKRSEKVPCILHMDSIKGTHAGLKNLVQSYLCEEWKERHKDTSEDVSSKFLNFRFIPLEVLKLILHFWGSLKWGYKMEFPLKLCIAS
****************************************RELLECVTKETIVQIEGIGNVPCVNADAVDCAPSCNVDCAPSCNEQMCA********************************CGFESCISELASRDLCTKG*********************************************************QWVDDSEVDDINMGVVVSPDYVFFRDKFCLGYLVVFSCTGIKIKDSNACGVQESFTFEKGIDDIVDIKFQWLQRFGSVEVKLHVILNDVAQDDNACGTSGIEELKFSFSDCNWSEQLEKITSLNAKYLALWSVDHDNPVDMDGVGQRRYFPNFDEPFEDVVYPEGDSDAVSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKHRFHFFNSFFFRKLADLDK****ISDGKAAFLRVRKWTRKVDIFGKDYIFIPVNFNLHWSLIVICHPGDVASFKVEDLKRSEKVPCILHMDSIKGTHAGLKNLVQSYLCEEWKERH*****DVSSKFLNFRFIPLEVLKLILHFWGSLKWGYKMEFPLKLCI**
***ELGV******************************************************************************************************************************************************************************************************DDINMGVVVSPDYVFFRDKFCLGYLV************************KG**DI******************************************************************************************EPFEDVVYPEGDSDAVSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKHRFHFFNSFFFRKLADLDK********KAAFLRVRKWTRKVDIFGKDYIFIPVNFNLHWSLIVICHPGDVAS********SEKVPCILHMDSIKGTHAGLKNLVQSYLCEEWKERHKDTSEDVSSKFLNFRFIPLEVLKLILHFWGSLKWGYKMEFPLKLCI**
MKSELGVFDFKEEDELPELEAGKFLGKFKNPNNDDSPALKRELLECVTKETIVQIEGIGNVPCVNADAVDCAPSCNVDCAPSCNEQMCAPMKIGGEEGNDIRAPQ***********LEKDNCGFESCISELASRDLCTKGPLLGESQLCSGNLDPPSNNEPVDVN*****************DIAPNGVSLNGHMSDQWVDDSEVDDINMGVVVSPDYVFFRDKFCLGYLVVFSCTGIKIKDSNACGVQESFTFEKGIDDIVDIKFQWLQRFGSVEVKLHVILNDVAQDDNACGTSGIEELKFSFSDCNWSEQLEKITSLNAKYLALWSVDHDNPVDMDGVGQRRYFPNFDEPFEDVVYPEGDSDAVSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKHRFHFFNSFFFRKLADLDKDPSSISDGKAAFLRVRKWTRKVDIFGKDYIFIPVNFNLHWSLIVICHPGDVASFKVEDLKRSEKVPCILHMDSIKGTHAGLKNLVQSYLCEEW**********VSSKFLNFRFIPLEVLKLILHFWGSLKWGYKMEFPLKLCIAS
***ELGVFDFKEEDELPELEAGKFLGKFKNPNNDDSPALKRELLECVTKETIVQIEGIGNVPCVNADAVDCAPSCNVDCAPSCNEQMCAPMKIG*****************************F*SCIS***SRDLCTKGPLLGE***************************************************DQWVDDSEVDDINMGVVVSPDYVFFRDKFCLGYLVVFSCTGIKIKDSNACGVQESFTFEKGIDDIVDIKFQWLQRFGSVEVKLHVILNDVAQDDNACGTSGIEELKFSFSDCNWSEQLEKITSLNAKYLALWSVD************RRYFPNFDEPFEDVVYPEGDSDAVSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKHRFHFFNSFFFRKLADLDKDPSSISDGKAAFLRVRKWTRKVDIFGKDYIFIPVNFNLHWSLIVICHPGDVASFKVEDLKRSEKVPCILHMDSIKGTHAGLKNLVQSYLCEEWKERHKDTSEDVSSKFLNFRFIPLEVLKLILHFWGSLKWGYKMEFPLKLCIAS
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MKSELGVFDFKEEDELPELEAGKFLGKFKNPNNDDSPALKRELLECVTKETIVQIEGIGNVPCVNADAVDCAPSCNVDCAPSCNEQMCAPMKIGGEEGNDIRAPQMNSTSCEQSPNLEKDNCGFESCISELASRDLCTKGPLLGESQLCSGNLDPPSNNEPVDVNSDADGSMSEGSSSSPASDIAPNGVSLNGHMSDQWVDDSEVDDINMGVVVSPDYVFFRDKFCLGYLVVFSCTGIKIKDSNACGVQESFTFEKGIDDIVDIKFQWLQRFGSVEVKLHVILNDVAQDDNACGTSGIEELKFSFSDCNWSEQLEKITSLNAKYLALWSVDHDNPVDMDGVGQRRYFPNFDEPFEDVVYPEGDSDAVSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKHRFHFFNSFFFRKLADLDKDPSSISDGKAAFLRVRKWTRKVDIFGKDYIFIPVNFNLHWSLIVICHPGDVASFKVEDLKRSEKVPCILHMDSIKGTHAGLKNLVQSYLCEEWKERHKDTSEDVSSKFLNFRFIPLEVLKLILHFWGSLKWGYKMEFPLKLCIAS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query568 2.2.26 [Sep-21-2011]
Q8L7S0 931 Probable ubiquitin-like-s yes no 0.936 0.571 0.480 1e-126
Q0WKV8 774 Probable ubiquitin-like-s no no 0.660 0.484 0.422 5e-73
O13769638 Ubiquitin-like-specific p yes no 0.276 0.246 0.345 7e-24
Q8RWN0571 Ubiquitin-like-specific p no no 0.301 0.299 0.333 4e-22
Q8BUH81037 Sentrin-specific protease yes no 0.294 0.161 0.325 2e-21
Q9BQF61050 Sentrin-specific protease yes no 0.286 0.155 0.327 5e-21
A7MBJ21047 Sentrin-specific protease yes no 0.294 0.159 0.325 6e-21
Q2PS26584 Ubiquitin-like-specific p no no 0.262 0.255 0.335 1e-20
D3ZF421037 Sentrin-specific protease no no 0.294 0.161 0.316 2e-20
Q6P7W0 1132 Sentrin-specific protease no no 0.216 0.108 0.395 2e-20
>sp|Q8L7S0|ULP2B_ARATH Probable ubiquitin-like-specific protease 2B OS=Arabidopsis thaliana GN=ULP2B PE=2 SV=3 Back     alignment and function desciption
 Score =  454 bits (1167), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 277/577 (48%), Positives = 360/577 (62%), Gaps = 45/577 (7%)

Query: 1   MKSELGVFDFKEEDELPELEAGKFLGKFKNPNNDDSPALKRELLECVTKETIVQIEGIGN 60
           MK    VFDFKEEDEL E  AGK L KF NP+  +SP L+R+ ++    E  V+ E +  
Sbjct: 1   MKKNFEVFDFKEEDELAESAAGKLLEKFTNPSPCNSPVLQRQRIQSFCNEKRVEEEEMEG 60

Query: 61  VPCVN-ADAVDCA-PSCNVDCAPSCNEQMCAPMKIGGEEGND----IRAPQMN------- 107
             C   A AV+     C  D       +    +   G E  D      A  +N       
Sbjct: 61  PSCAEPATAVESDDHQCEDDSTLVTEAKESRTILTFGLETTDHLEETDAEHVNQGLMLGL 120

Query: 108 -STSCEQSPNLEKDNCGF-------------------ESCISELASRDLCTKGPLLGESQ 147
            +    +  +++ DN G                    ES   +L       +     + Q
Sbjct: 121 KTEDLAKETDIDHDNHGLMFGLNSEDDIEETDVDHRVESFSCQLGGNSFYAETSSYSQRQ 180

Query: 148 LCSGNLDPPSNNEPVDVNSDADGSMSEGSSSSPASDIAPNGVSLNGHMSDQWVDDSEVDD 207
           L S   D  S+ E +D+ S  D S+S+ S+ S ASD   +       M++   +D E  D
Sbjct: 181 LNSPFSDSSSSEEQIDMMSAIDESLSDRSALSEASDSEDDE---EDWMTEHCFNDEEKID 237

Query: 208 INMGVVVSPDYVFFRDKFCLGYLVVFSCTGIKIKDSNACGVQESFTFEKGIDDIVDIKFQ 267
           ++  V+++ +YV  +D  C   LV+FSC GIKIK   A   +  F+ E G++DIV I++ 
Sbjct: 238 LSTAVIMTSEYVILKDMHCAASLVIFSCNGIKIKSFLANNEEVPFSCEFGVEDIVSIQYN 297

Query: 268 WLQRFGSVEVKLHVILNDVAQDDNACGTSGIEELKFSFSDCNWSEQLEKITSLNAKYLAL 327
           W Q  G + +++ V+L D       C    +EELK +  + NW  + +KI SL+ KY A+
Sbjct: 298 WYQNVGLIILRIRVLLKD-----ENCH-EDMEELKIAVKEHNWPNKQQKINSLHVKYPAV 351

Query: 328 WSVDHDNPVDMDGVG---QRRYFPNFDEPFEDVVYPEGDSDAVSISKRDIDLLQPDTFVN 384
           W+ D ++ V++ G     Q+RYFP+FDEPFEDVVYP+GD DAVSI KRD++LLQP+TFVN
Sbjct: 352 WNTDLEDDVEVSGYNLNQQKRYFPSFDEPFEDVVYPKGDPDAVSICKRDVELLQPETFVN 411

Query: 385 DTIIDFYIKYLKNQIQAEEKHRFHFFNSFFFRKLADLDKDPSSISDGKAAFLRVRKWTRK 444
           DTIIDFYI YLKNQIQ EEKHRFHFFNSFFFRKLADLDKDPSSI+DGKAAFLRVRKWTRK
Sbjct: 412 DTIIDFYINYLKNQIQTEEKHRFHFFNSFFFRKLADLDKDPSSIADGKAAFLRVRKWTRK 471

Query: 445 VDIFGKDYIFIPVNFNLHWSLIVICHPGDVASFKVEDLKRSEKVPCILHMDSIKGTHAGL 504
           VD+FGKDYIF+PVN+NLHWSLIVICHPG+VA+    DL  S+KVPCILHMDSIKG+HAGL
Sbjct: 472 VDMFGKDYIFVPVNYNLHWSLIVICHPGEVANRTDLDLDDSKKVPCILHMDSIKGSHAGL 531

Query: 505 KNLVQSYLCEEWKERHKDTSEDVSSKFLNFRFIPLEV 541
           KNLVQ+YLCEEWKERHK+TS+D+SS+F+N RF+ LE+
Sbjct: 532 KNLVQTYLCEEWKERHKETSDDISSRFMNLRFVSLEL 568
Protease that catalyzes two essential functions in the SUMO pathway: processing of full-length SUMOs to their mature forms and deconjugation of SUMO from targeted proteins.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: 6EC: 8
>sp|Q0WKV8|ULP2A_ARATH Probable ubiquitin-like-specific protease 2A OS=Arabidopsis thaliana GN=ULP2A PE=2 SV=2 Back     alignment and function description
>sp|O13769|ULP2_SCHPO Ubiquitin-like-specific protease 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ulp2 PE=1 SV=2 Back     alignment and function description
>sp|Q8RWN0|ULP1C_ARATH Ubiquitin-like-specific protease 1C OS=Arabidopsis thaliana GN=ULP1C PE=1 SV=1 Back     alignment and function description
>sp|Q8BUH8|SENP7_MOUSE Sentrin-specific protease 7 OS=Mus musculus GN=Senp7 PE=2 SV=1 Back     alignment and function description
>sp|Q9BQF6|SENP7_HUMAN Sentrin-specific protease 7 OS=Homo sapiens GN=SENP7 PE=1 SV=4 Back     alignment and function description
>sp|A7MBJ2|SENP7_BOVIN Sentrin-specific protease 7 OS=Bos taurus GN=SENP7 PE=2 SV=1 Back     alignment and function description
>sp|Q2PS26|ULP1D_ARATH Ubiquitin-like-specific protease 1D OS=Arabidopsis thaliana GN=ULP1D PE=1 SV=1 Back     alignment and function description
>sp|D3ZF42|SENP7_RAT Sentrin-specific protease 7 OS=Rattus norvegicus GN=Senp7 PE=2 SV=1 Back     alignment and function description
>sp|Q6P7W0|SENP6_MOUSE Sentrin-specific protease 6 OS=Mus musculus GN=Senp6 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query568
224063319 1041 predicted protein [Populus trichocarpa] 0.934 0.510 0.563 1e-154
255545960 1042 sentrin/sumo-specific protease, putative 0.938 0.511 0.558 1e-142
449508962 917 PREDICTED: LOW QUALITY PROTEIN: probable 0.920 0.570 0.522 1e-129
449470062 915 PREDICTED: probable ubiquitin-like-speci 0.920 0.571 0.522 1e-129
334182427 931 putative ubiquitin-like-specific proteas 0.936 0.571 0.480 1e-125
334182425 963 putative ubiquitin-like-specific proteas 0.941 0.555 0.458 1e-122
297849278 970 Ulp1 protease family protein [Arabidopsi 0.940 0.550 0.459 1e-119
356518421 938 PREDICTED: probable ubiquitin-like-speci 0.882 0.534 0.488 1e-119
357465275 1043 Sentrin-specific protease [Medicago trun 0.929 0.506 0.454 1e-112
357465273 1046 Sentrin-specific protease [Medicago trun 0.926 0.502 0.453 1e-111
>gi|224063319|ref|XP_002301094.1| predicted protein [Populus trichocarpa] gi|222842820|gb|EEE80367.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  552 bits (1423), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 309/548 (56%), Positives = 374/548 (68%), Gaps = 17/548 (3%)

Query: 1   MKSELGVFDFKEEDELPELEAGKFLGKFKNPNNDDSPALKRELLECVTKETIVQIEGIGN 60
           MK+ L VFDFKEE+E+ EL AGK LGKFKNP+ D+    + + LEC  +E  V  +  G+
Sbjct: 1   MKNGLEVFDFKEENEIAELAAGKVLGKFKNPSLDNPFFSEYQFLECFAQECDVPGKESGS 60

Query: 61  VPCVNADAVDCAPSCNVDCAPSCNEQMCAPMKIGGEEGNDIR--APQMNSTSCEQSPNLE 118
           + CV+ADA+ C      D A +C +       +  EEGN      P + S S +Q     
Sbjct: 61  LVCVDADAIGC------DNADTCVQPGTVRDDLITEEGNSGSDAVPLLTSLSHDQGFCFR 114

Query: 119 KDNCGFESCISELASRDLCTKGPLLGESQLCSGNLD-PPSNNEPVDVNSDADGSMSEGSS 177
            D+   +   SE      C + PL GESQL  G+ D PPS++E  D   D D  M + S 
Sbjct: 115 VDDFESKRLFSEDERIISCHEAPLPGESQLNRGHRDSPPSSSEADDGQLDVDDHMEDCSP 174

Query: 178 SSPASDIAPNGVSLNGHMSDQWVDDSEVDDINMGVVVSPDYVFFRDKFCLGYLVVFSCTG 237
           SSP  DI    V LNG         +EV  IN+ V    DYV +R K C G ++ FS  G
Sbjct: 175 SSPTPDITEASVILNGPTPTNCFSYAEVGGINLLV----DYVVYRGKHCSGCVMTFSYGG 230

Query: 238 IKIKDSNACGVQESFTFEKGIDDIVDIKFQWLQRFGSVEVKLHVILNDVAQDDNACGTSG 297
           +KI  + A G + +F FE GI+DIV I+ Q LQRFG+V +KL+++  D  Q D   G SG
Sbjct: 231 VKINGATAHGDEGTFGFEAGIEDIVSIESQNLQRFGTVTIKLNILSKDAVQADTTHGMSG 290

Query: 298 IEELKFSFSDCNWSEQLEKITSLNAKYLALWSVDHDNPVDMDG----VGQRRYFPNFDEP 353
           +EEL+ +  + NWS + E+I+SLN KY AL SV HD    MDG    + QRRYFP+FD  
Sbjct: 291 VEELEVAVVEPNWSRKWEEISSLNLKYSALLSVIHDMDSAMDGGVDLLQQRRYFPSFDVE 350

Query: 354 FEDVVYPEGDSDAVSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKHRFHFFNSF 413
           FEDV+YP+GDSDAVSISKRD+DLLQP+TF+NDTIIDFYIKYLKNQI  EEKHR+HFFNSF
Sbjct: 351 FEDVIYPKGDSDAVSISKRDVDLLQPETFINDTIIDFYIKYLKNQIPPEEKHRYHFFNSF 410

Query: 414 FFRKLADLDKDPSSISDGKAAFLRVRKWTRKVDIFGKDYIFIPVNFNLHWSLIVICHPGD 473
           FFRKLADLDKDPSS+ DG+AAFLRV KWTRKVDIFGKDYIFIPVNFNLHWSL+VICHPG+
Sbjct: 411 FFRKLADLDKDPSSVKDGRAAFLRVHKWTRKVDIFGKDYIFIPVNFNLHWSLLVICHPGE 470

Query: 474 VASFKVEDLKRSEKVPCILHMDSIKGTHAGLKNLVQSYLCEEWKERHKDTSEDVSSKFLN 533
           VA  K ED  +S  VPCILH+DSIKGTHAGLKNLVQSYL EEWK R KDTSED+SSKFLN
Sbjct: 471 VAGVKDEDTSKSVIVPCILHLDSIKGTHAGLKNLVQSYLWEEWKVRQKDTSEDMSSKFLN 530

Query: 534 FRFIPLEV 541
            RF+PLE+
Sbjct: 531 LRFVPLEL 538

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255545960|ref|XP_002514040.1| sentrin/sumo-specific protease, putative [Ricinus communis] gi|223547126|gb|EEF48623.1| sentrin/sumo-specific protease, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449508962|ref|XP_004163455.1| PREDICTED: LOW QUALITY PROTEIN: probable ubiquitin-like-specific protease 2B-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449470062|ref|XP_004152737.1| PREDICTED: probable ubiquitin-like-specific protease 2B-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|334182427|ref|NP_001184951.1| putative ubiquitin-like-specific protease 2B [Arabidopsis thaliana] gi|357529069|sp|Q8L7S0.3|ULP2B_ARATH RecName: Full=Probable ubiquitin-like-specific protease 2B gi|215400502|gb|ACJ66287.1| EL5 SUMO protease [Arabidopsis thaliana] gi|332190365|gb|AEE28486.1| putative ubiquitin-like-specific protease 2B [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|334182425|ref|NP_172444.3| putative ubiquitin-like-specific protease 2B [Arabidopsis thaliana] gi|332190364|gb|AEE28485.1| putative ubiquitin-like-specific protease 2B [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297849278|ref|XP_002892520.1| Ulp1 protease family protein [Arabidopsis lyrata subsp. lyrata] gi|297338362|gb|EFH68779.1| Ulp1 protease family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356518421|ref|XP_003527877.1| PREDICTED: probable ubiquitin-like-specific protease 2B-like [Glycine max] Back     alignment and taxonomy information
>gi|357465275|ref|XP_003602919.1| Sentrin-specific protease [Medicago truncatula] gi|355491967|gb|AES73170.1| Sentrin-specific protease [Medicago truncatula] Back     alignment and taxonomy information
>gi|357465273|ref|XP_003602918.1| Sentrin-specific protease [Medicago truncatula] gi|355491966|gb|AES73169.1| Sentrin-specific protease [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query568
DICTYBASE|DDB_G0293508 1035 DDB_G0293508 [Dictyostelium di 0.267 0.146 0.359 2.1e-19
ZFIN|ZDB-GENE-080204-25 1035 senp6a "SUMO1/sentrin specific 0.232 0.127 0.364 2.7e-16
TAIR|locus:2194574571 OTS2 "OVERLY TOLERANT TO SALT 0.343 0.341 0.293 3.9e-16
FB|FBgn0030420681 CG12717 [Drosophila melanogast 0.350 0.292 0.319 1e-15
ZFIN|ZDB-GENE-070912-345 991 si:dkey-100n23.3 "si:dkey-100n 0.198 0.114 0.384 2.1e-15
MGI|MGI:1922075 1132 Senp6 "SUMO/sentrin specific p 0.371 0.186 0.300 2.1e-15
UNIPROTKB|I3LG401038 SENP7 "Uncharacterized protein 0.202 0.110 0.371 2.2e-15
DICTYBASE|DDB_G0289557 778 DDB_G0289557 "peptidase C48 fa 0.325 0.237 0.299 2.7e-15
UNIPROTKB|J3QT09985 SENP7 "Sentrin-specific protea 0.202 0.116 0.363 3e-15
MGI|MGI:19135651037 Senp7 "SUMO1/sentrin specific 0.202 0.110 0.363 3.6e-15
DICTYBASE|DDB_G0293508 DDB_G0293508 [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
 Score = 273 (101.2 bits), Expect = 2.1e-19, Sum P(2) = 2.1e-19
 Identities = 60/167 (35%), Positives = 96/167 (57%)

Query:   357 VVYPEGDSD----AVSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKXXXXXXXX 412
             +VYPE   +     V I + DI  L+P  F+ND+II+FY  Y+K+++  EE+        
Sbjct:   426 MVYPETQENNKMSQVKIIRNDIKRLEPGEFLNDSIIEFYSMYIKDKVLTEEQRKKYFFFN 485

Query:   413 XXXXKLADLDKDPSSISDGKAAFLRVRKWTRKVDIFGKDYIFIPVNFNLHWSLIVICHPG 472
                 KL   ++D  ++     A+  V+KWT K D+F KD+IF+P+N+  HWSL++IC+PG
Sbjct:   486 SFFYKLFT-NEDNENL-----AYEDVKKWTGKEDLFSKDFIFVPINYAAHWSLMIICYPG 539

Query:   473 DVASFKVEDLKRSEKVPCILHMDSIKGTHAGLKNLVQSYLCEEWKER 519
                + KV  +   EK PC++++DS+        N ++ YL  EWK +
Sbjct:   540 ---ADKV--VGEYEKSPCMIYLDSLFKRPGQFANKLRKYLTLEWKNK 581
GO:0008234 "cysteine-type peptidase activity" evidence=IEA
GO:0006508 "proteolysis" evidence=IEA
ZFIN|ZDB-GENE-080204-25 senp6a "SUMO1/sentrin specific peptidase 6a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
TAIR|locus:2194574 OTS2 "OVERLY TOLERANT TO SALT 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0030420 CG12717 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070912-345 si:dkey-100n23.3 "si:dkey-100n23.3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1922075 Senp6 "SUMO/sentrin specific peptidase 6" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|I3LG40 SENP7 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0289557 DDB_G0289557 "peptidase C48 family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|J3QT09 SENP7 "Sentrin-specific protease 7" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1913565 Senp7 "SUMO1/sentrin specific peptidase 7" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.220.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00020973
hypothetical protein (1041 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query568
COG5160578 COG5160, ULP1, Protease, Ulp1 family [Posttranslat 2e-28
pfam02902216 pfam02902, Peptidase_C48, Ulp1 protease family, C- 3e-16
PLN03189490 PLN03189, PLN03189, Protease specific for SMALL UB 9e-13
>gnl|CDD|227489 COG5160, ULP1, Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
 Score =  119 bits (299), Expect = 2e-28
 Identities = 59/175 (33%), Positives = 87/175 (49%), Gaps = 30/175 (17%)

Query: 354 FEDVVYPEGDSDAVSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEK-HRFHFFNS 412
            +   YP  D  ++ I+ +D   L+   ++NDTIIDFY+K L    +   K  + H FN+
Sbjct: 368 LKSSCYPFNDRSSIEITNQDFKRLRNGDWLNDTIIDFYMKLLSKISKNTSKREQVHLFNT 427

Query: 413 FFFRKLADLDKDPSSISDGKAAFLRVRKWTRKVDIFGKDYIFIPVNFNLHWSLIVICHPG 472
           FF+ KL            G +    VR+WT+K DIF K YIFIP+N + HW L +I +P 
Sbjct: 428 FFYTKL---------SRRGYSG---VRRWTKKTDIFSKKYIFIPINISYHWFLAIIDNP- 474

Query: 473 DVASFKVEDLKRSEKVPCILHMDSIKGTHAGLKNLVQSYLCEEWKERH-KDTSED 526
                             IL+ DS+  TH  +   ++SYL +E+K +H KD    
Sbjct: 475 ---------------KKNILYFDSLANTHDPVLEFLRSYLLDEYKIQHDKDPQIK 514

Length = 578
>gnl|CDD|217278 pfam02902, Peptidase_C48, Ulp1 protease family, C-terminal catalytic domain Back     alignment and domain information
>gnl|CDD|215622 PLN03189, PLN03189, Protease specific for SMALL UBIQUITIN-RELATED MODIFIER (SUMO); Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 568
KOG0778511 consensus Protease, Ulp1 family [Posttranslational 100.0
COG5160578 ULP1 Protease, Ulp1 family [Posttranslational modi 100.0
PLN03189490 Protease specific for SMALL UBIQUITIN-RELATED MODI 100.0
PF02902216 Peptidase_C48: Ulp1 protease family, C-terminal ca 99.94
KOG3246223 consensus Sentrin-specific cysteine protease (Ulp1 99.88
KOG0779595 consensus Protease, Ulp1 family [Posttranslational 99.58
PF03290423 Peptidase_C57: Vaccinia virus I7 processing peptid 95.55
PRK11836403 deubiquitinase; Provisional 94.23
PRK14848317 deubiquitinase SseL; Provisional 90.98
KOG0779 595 consensus Protease, Ulp1 family [Posttranslational 80.31
>KOG0778 consensus Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=8.6e-39  Score=344.07  Aligned_cols=167  Identities=30%  Similarity=0.557  Sum_probs=146.2

Q ss_pred             CceEEehhhhhccCCCCCCcHHHHHHHHHHHHHhhhhc-cCCcEEEechHHHHHhhccCCCCCCcchhhHHHHHHHhhhh
Q 008357          365 DAVSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAE-EKHRFHFFNSFFFRKLADLDKDPSSISDGKAAFLRVRKWTR  443 (568)
Q Consensus       365 ~~i~Lt~~Dl~~L~p~~WLND~IInFYl~yL~~~~~~~-~~~~v~~fnSfFy~kL~~~~~~P~s~s~~k~~y~~VkrWtk  443 (568)
                      .+|.||.+||+||.+++||||+||||||++|.++.... +-+++|+||||||++|..            .+|+.|+|||+
T Consensus       316 ~~i~It~~dl~tl~~~~WLNDevINfYm~ll~ers~~~~~yp~~h~FnTFFy~kL~~------------~gy~~VkRWTk  383 (511)
T KOG0778|consen  316 FNIDITGKDLQTLRPGNWLNDEVINFYMELLKERSKKDSKYPKVHAFNTFFYTKLVG------------RGYAGVKRWTK  383 (511)
T ss_pred             ccccccHHHHhhccCccchhHHHHHHHHHHHHhhccccCCCceEEEEechhhhhhhh------------cchHHHHhHhh
Confidence            45999999999999999999999999999999986543 257899999999999985            58999999999


Q ss_pred             cccccccceEEEeeccCcceEEEEEecCCCcccchhhhhccCCCCCEEEEEeCCCCCChhHHHHHHHHHHHHHHhhcCCC
Q 008357          444 KVDIFGKDYIFIPVNFNLHWSLIVICHPGDVASFKVEDLKRSEKVPCILHMDSIKGTHAGLKNLVQSYLCEEWKERHKDT  523 (568)
Q Consensus       444 kvdLfekd~IfIPIN~~~HWsLvVI~~P~~~~~~~ded~~~~~k~~~I~~lDSL~~s~~~i~~~L~~yL~~E~k~K~~~~  523 (568)
                      +++||++|.||||||.+.||+|+||++.                +++|.|||||++...+++++|++||++|+..|.+..
T Consensus       384 ~v~if~~d~i~vPIH~~vHW~l~vid~r----------------~k~i~y~DS~~~~~nr~~~aL~~Yl~~E~~~k~~~~  447 (511)
T KOG0778|consen  384 KVDIFDKDIIFVPIHLGVHWCLAVIDLR----------------EKTIEYYDSLGGGPNRICDALAKYLQDESRDKSKKD  447 (511)
T ss_pred             ccCccccceeEeeeecCceEEEEEEEcc----------------cceEEEeeccCCCCcchHHHHHHHHHHHHhhhhcCC
Confidence            9999999999999999999999999863                479999999998776666999999999999998876


Q ss_pred             CccccccccccccccCCCCCcCCCC-chhhHHHHHHHHHhh
Q 008357          524 SEDVSSKFLNFRFIPLEVLKLILHF-WGSLKWGYKMEFPLK  563 (568)
Q Consensus       524 ~~di~s~w~n~~~v~~~vPQQ~Ng~-CGvfVL~ym~~fl~k  563 (568)
                      + |+ +.|.. .+ ..++|||.||+ ||+|+++|+.+...-
T Consensus       448 ~-d~-s~w~~-~~-~~~iP~Q~Ng~DCG~f~c~~~~~~s~~  484 (511)
T KOG0778|consen  448 F-DV-SGWTI-EF-VQNIPQQRNGSDCGMFVCKYADYISRD  484 (511)
T ss_pred             C-Cc-cchhh-hh-hhccccccCCCccceEEeeechhhccC
Confidence            5 33 36863 33 35899999997 999999998887543

>COG5160 ULP1 Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN03189 Protease specific for SMALL UBIQUITIN-RELATED MODIFIER (SUMO); Provisional Back     alignment and domain information
>PF02902 Peptidase_C48: Ulp1 protease family, C-terminal catalytic domain This family belongs to family C48 of the peptidase classification Back     alignment and domain information
>KOG3246 consensus Sentrin-specific cysteine protease (Ulp1 family) [General function prediction only] Back     alignment and domain information
>KOG0779 consensus Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF03290 Peptidase_C57: Vaccinia virus I7 processing peptidase; InterPro: IPR004970 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PRK11836 deubiquitinase; Provisional Back     alignment and domain information
>PRK14848 deubiquitinase SseL; Provisional Back     alignment and domain information
>KOG0779 consensus Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query568
3eay_A323 Crystal Structure Of The Human Senp7 Catalytic Doma 3e-16
2xph_A238 Crystal Structure Of Human Senp1 With The Bound Cob 1e-07
2iyc_A226 Senp1 Native Structure Length = 226 2e-07
2xre_A230 Detection Of Cobalt In Previously Unassigned Human 2e-07
2ckg_A225 The Structure Of Senp1 Sumo-2 Co-Complex Suggests A 2e-07
2iy0_A226 Senp1 (Mutant) Sumo1 Rangap Length = 226 2e-07
2g4d_A205 Crystal Structure Of Human Senp1 Mutant (C603s) In 1e-06
1tgz_A226 Structure Of Human Senp2 In Complex With Sumo-1 Len 1e-05
2io0_A232 Crystal Structure Of Human Senp2 In Complex With Pr 2e-05
>pdb|3EAY|A Chain A, Crystal Structure Of The Human Senp7 Catalytic Domain Length = 323 Back     alignment and structure 
Iteration: 1

 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 96/220 (43%), Gaps = 57/220 (25%)
Query: 357 VVYPEGDSDA-VSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKXXXXXXXXX-- 413
           +VYP   +   + ++  D++ L+   F+ND IIDFY+KYL  +  ++E            
Sbjct: 22  IVYPPPPTKGGLGVTNEDLECLEEGEFLNDVIIDFYLKYLILEKASDELVERSHIFSSFF 81
Query: 414 ---XXXKLADLDKDPSSISDGKAAFLRVRKWTRKVDIFGKDYIFIPVNFNLHWSLIVICH 470
                 K  +L +D  ++S  +    RVR WTR ++IF KDYIF+PVN + HW L VIC 
Sbjct: 82  YKCLTRKENNLTEDNPNLSMAQRRHKRVRTWTRHINIFNKDYIFVPVNESSHWYLAVICF 141
Query: 471 P------------------------------------GDVASFKVEDLKRSE-------- 486
           P                                        S   ED + +E        
Sbjct: 142 PWLEEAVYEDFPQTVSQQSQAQQSQNDNKTIDNDLRTTSTLSLSAEDSQSTESNMSVPKK 201
Query: 487 --KVPCILHMDSIKGTHAGLKNLVQS---YLCEEWKERHK 521
             K PCIL +DS+K   A ++N VQ+   YL  EW+ + K
Sbjct: 202 MCKRPCILILDSLKA--ASVQNTVQNLREYLEVEWEVKLK 239
>pdb|2XPH|A Chain A, Crystal Structure Of Human Senp1 With The Bound Cobalt Length = 238 Back     alignment and structure
>pdb|2IYC|A Chain A, Senp1 Native Structure Length = 226 Back     alignment and structure
>pdb|2XRE|A Chain A, Detection Of Cobalt In Previously Unassigned Human Senp1 Structure Length = 230 Back     alignment and structure
>pdb|2CKG|A Chain A, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A Structural Basis For Discrimination Between Sumo Paralogues During Processing Length = 225 Back     alignment and structure
>pdb|2IY0|A Chain A, Senp1 (Mutant) Sumo1 Rangap Length = 226 Back     alignment and structure
>pdb|2G4D|A Chain A, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex With Sumo-1 Length = 205 Back     alignment and structure
>pdb|1TGZ|A Chain A, Structure Of Human Senp2 In Complex With Sumo-1 Length = 226 Back     alignment and structure
>pdb|2IO0|A Chain A, Crystal Structure Of Human Senp2 In Complex With Presumo-2 Length = 232 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query568
2xph_A238 Sentrin-specific protease 1; hydrolase, cysteine p 1e-28
3eay_A323 Sentrin-specific protease 7; ULP, SENP, SUMO, ubiq 5e-28
1th0_A226 SMT3-, sentrin-specific protease 2; SUMO, AXAM, SE 3e-25
2bkr_A212 Sentrin-specific protease 8; protein-binding-hydro 8e-22
1euv_A221 ULP1 protease; SUMO hydrolase, ubiquitin-like prot 8e-22
2oix_A186 Xanthomonas outer protein D; CLAN CE family 48 cys 1e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-06
>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A Length = 238 Back     alignment and structure
 Score =  112 bits (282), Expect = 1e-28
 Identities = 46/199 (23%), Positives = 84/199 (42%), Gaps = 38/199 (19%)

Query: 347 FPNFDEPFEDVV---YPEGDSDAV-------SISKRDIDLLQPDTFVNDTIIDFYIKYLK 396
           FP   E  E  +   +  G+ D V       +I+++DI  L    ++ND II+FY+  L 
Sbjct: 14  FPEITEEMEKEIKNVFRNGNQDEVLSEAFRLTITRKDIQTLNHLNWLNDEIINFYMNMLM 73

Query: 397 NQIQAEEKHRFHFFNSFFFRKLADLDKDPSSISDGKAAFLRVRKWTRKVDIFGKDYIFIP 456
            + + +     H FN+FFF KL                   V++WT+KVD+F  D + +P
Sbjct: 74  ERSKEKGLPSVHAFNTFFFTKLKTAGYQ------------AVKRWTKKVDVFSVDILLVP 121

Query: 457 VNFNLHWSLIVICHPGDVASFKVEDLKRSEKVPCILHMDSIKGTHAGLKNLVQSYLCEEW 516
           ++  +HW L V+                      I + DS+ G +     ++  YL +E 
Sbjct: 122 IHLGVHWCLAVVDFR----------------KKNITYYDSMGGINNEACRILLQYLKQES 165

Query: 517 KERHKDTSEDVSSKFLNFR 535
            ++ +   +    +  + +
Sbjct: 166 IDKKRKEFDTNGWQLFSKK 184
>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens} Length = 323 Back     alignment and structure
>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A Length = 226 Back     alignment and structure
>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A Length = 212 Back     alignment and structure
>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A Length = 221 Back     alignment and structure
>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A Length = 186 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query568
3eay_A323 Sentrin-specific protease 7; ULP, SENP, SUMO, ubiq 100.0
2xph_A238 Sentrin-specific protease 1; hydrolase, cysteine p 100.0
1th0_A226 SMT3-, sentrin-specific protease 2; SUMO, AXAM, SE 100.0
2bkr_A212 Sentrin-specific protease 8; protein-binding-hydro 100.0
1euv_A221 ULP1 protease; SUMO hydrolase, ubiquitin-like prot 100.0
2oix_A186 Xanthomonas outer protein D; CLAN CE family 48 cys 99.96
>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=7.2e-43  Score=361.40  Aligned_cols=206  Identities=35%  Similarity=0.567  Sum_probs=161.9

Q ss_pred             cceecCCC-CCCceEEehhhhhccCCCCCCcHHHHHHHHHHHHH-hhhhccCCcEEEechHHHHHhhccCCC-----CCC
Q 008357          355 EDVVYPEG-DSDAVSISKRDIDLLQPDTFVNDTIIDFYIKYLKN-QIQAEEKHRFHFFNSFFFRKLADLDKD-----PSS  427 (568)
Q Consensus       355 ~~~~yp~~-~~~~i~Lt~~Dl~~L~p~~WLND~IInFYl~yL~~-~~~~~~~~~v~~fnSfFy~kL~~~~~~-----P~s  427 (568)
                      ..++||++ +.+++.|+++|+.||.+++||||+|||||++||.. +.....+.++|+||||||++|....+.     | .
T Consensus        20 ~~~~yP~~~~k~~i~it~~Dl~~L~~~~wLND~IInFyl~~L~~e~~~~~~~~r~h~FnSFFy~kL~~~~~~~~~~~~-~   98 (323)
T 3eay_A           20 KLIVYPPPPTKGGLGVTNEDLECLEEGEFLNDVIIDFYLKYLILEKASDELVERSHIFSSFFYKCLTRKENNLTEDNP-N   98 (323)
T ss_dssp             EEEEESCTTSSSCEEEEHHHHHTTSTTCCCCHHHHHHHHHHHHHHTSCHHHHHTEEECCTHHHHHHSCC--------C-C
T ss_pred             eeEEeCCCCCCCceEEEHHHHHhhCCCCCcCHHHHHHHHHHHHhhhccccccCcEEEEchHHHHHHHhcccccccccc-c
Confidence            44889987 67999999999999999999999999999999964 344444579999999999999864321     1 1


Q ss_pred             cchhhHHHHHHHhhhhcccccccceEEEeeccCcceEEEEEecCCCcccch-----------------------hhh---
Q 008357          428 ISDGKAAFLRVRKWTRKVDIFGKDYIFIPVNFNLHWSLIVICHPGDVASFK-----------------------VED---  481 (568)
Q Consensus       428 ~s~~k~~y~~VkrWtkkvdLfekd~IfIPIN~~~HWsLvVI~~P~~~~~~~-----------------------ded---  481 (568)
                      .+..+.+|.+|+||||+++||++|+||||||.+.||+|+|||+|+....+.                       |++   
T Consensus        99 ~s~~~~~y~~VrrWtrkvdlf~kD~I~IPIn~~~HW~LaVI~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  178 (323)
T 3eay_A           99 LSMAQRRHKRVRTWTRHINIFNKDYIFVPVNESSHWYLAVICFPWLEEAVYEDFPQTVSQQSQAQQSQNDNKTIDNDLRT  178 (323)
T ss_dssp             SCHHHHHHTTSGGGGTTCCGGGCSEEEEEEEETTEEEEEEEECTTCSSCBCC----------------------------
T ss_pred             chhHHHHHHHHHHHHhhcccccCCEEEEecCCCCceEEEEEecCCccccccccccccccccccccccccccccccccccc
Confidence            223457899999999999999999999999999999999999997521100                       000   


Q ss_pred             --------------------hccCCCCCEEEEEeCCCCCC-hhHHHHHHHHHHHHHHhhcCCCCccccccccccccccCC
Q 008357          482 --------------------LKRSEKVPCILHMDSIKGTH-AGLKNLVQSYLCEEWKERHKDTSEDVSSKFLNFRFIPLE  540 (568)
Q Consensus       482 --------------------~~~~~k~~~I~~lDSL~~s~-~~i~~~L~~yL~~E~k~K~~~~~~di~s~w~n~~~v~~~  540 (568)
                                          ..+..+.|||+|||||++.+ .++...|++||..||+.|++... ++. .| .++....+
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~k~pcIl~lDSL~~~~~~~~~~~Lr~YL~~E~~~k~~~~~-~f~-~~-~~~~~~~~  255 (323)
T 3eay_A          179 TSTLSLSAEDSQSTESNMSVPKKMCKRPCILILDSLKAASVQNTVQNLREYLEVEWEVKLKTHR-QFS-KT-NMVDLCPK  255 (323)
T ss_dssp             ---------------------CCCCBCSEEEEECSSCCSSHHHHHHHHHHHHHHHHHHHHSSCC-CCC-TT-TSCEECCB
T ss_pred             ccccccccccccccccccccccccCCCCeEEEEECCCCCCcchHHHHHHHHHHHHHHhhcCCCc-CCC-Hh-HceeccCC
Confidence                                01234789999999999864 77999999999999999876432 221 12 24445568


Q ss_pred             CCCcCCCC-chhhHHHHHHHHHhhh
Q 008357          541 VLKLILHF-WGSLKWGYKMEFPLKL  564 (568)
Q Consensus       541 vPQQ~Ng~-CGvfVL~ym~~fl~k~  564 (568)
                      +|||.|++ ||+|||.||++|....
T Consensus       256 ~P~Q~N~~DCGvfvl~~~e~~~~~~  280 (323)
T 3eay_A          256 VPKQDNSSDCGVYLLQYVESFFKDP  280 (323)
T ss_dssp             CCCCCSTTCHHHHHHHHHHHHHHSC
T ss_pred             CCCcCCCCcHHHHHHHHHHHHHhCC
Confidence            99999997 9999999999998765
>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A Back     alignment and structure
>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A Back     alignment and structure
>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A Back     alignment and structure
>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A Back     alignment and structure
>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 568
d1th0a_226 d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {H 4e-26
d2bkra1212 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SEN 1e-25
d2iy1a1225 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {H 8e-25
d1euva_221 d.3.1.7 (A:) Ulp1 protease C-terminal domain {Bake 4e-18
>d1th0a_ d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 226 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 2, SENP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (260), Expect = 4e-26
 Identities = 36/169 (21%), Positives = 75/169 (44%), Gaps = 28/169 (16%)

Query: 367 VSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKHRFHFFNSFFFRKLADLDKDPS 426
           + I++ DI  L+   ++ND +I+FY+  L  + + +     H F++FF+ KL        
Sbjct: 32  LRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQGYPALHVFSTFFYPKLKSGGYQ-- 89

Query: 427 SISDGKAAFLRVRKWTRKVDIFGKDYIFIPVNFNLHWSLIVICHPGDVASFKVEDLKRSE 486
                      V++WT+ V++F ++ I +P++  +HWSL+VI                  
Sbjct: 90  ----------AVKRWTKGVNLFEQEIILVPIHRKVHWSLVVIDLRK-------------- 125

Query: 487 KVPCILHMDSIKGTHAGLKNLVQSYLCEEWKERHKDTSEDVSSKFLNFR 535
              C+ ++DS+      +  ++  YL +E K +       +     + +
Sbjct: 126 --KCLKYLDSMGQKGHRICEILLQYLQDESKTKRNSDLNLLEWTHHSMK 172
>d2bkra1 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SENP8 {Human (Homo sapiens) [TaxId: 9606]} Length = 212 Back     information, alignment and structure
>d2iy1a1 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 225 Back     information, alignment and structure
>d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 221 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query568
d1th0a_226 Sentrin-specific protease 2, SENP2 {Human (Homo sa 100.0
d2iy1a1225 Sentrin-specific protease 1 {Human (Homo sapiens) 99.98
d1euva_221 Ulp1 protease C-terminal domain {Baker's yeast (Sa 99.97
d2bkra1212 Sentrin-specific protease 8, SENP8 {Human (Homo sa 99.97
>d1th0a_ d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 2, SENP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.9e-33  Score=267.96  Aligned_cols=169  Identities=24%  Similarity=0.499  Sum_probs=147.4

Q ss_pred             CceEEehhhhhccCCCCCCcHHHHHHHHHHHHHhhhhccCCcEEEechHHHHHhhccCCCCCCcchhhHHHHHHHhhhhc
Q 008357          365 DAVSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKHRFHFFNSFFFRKLADLDKDPSSISDGKAAFLRVRKWTRK  444 (568)
Q Consensus       365 ~~i~Lt~~Dl~~L~p~~WLND~IInFYl~yL~~~~~~~~~~~v~~fnSfFy~kL~~~~~~P~s~s~~k~~y~~VkrWtkk  444 (568)
                      .++.|+++|+.+|.+++||||+|||||++||.++..+....++++|+|+|+.+|..            ..|..+++|+++
T Consensus        30 ~~~~i~~~Dl~~L~~~~WLnD~iI~~y~~~l~~~~~~~~~~~~~~~~~~f~~~l~~------------~~~~~~~~~~~~   97 (226)
T d1th0a_          30 FKLRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQGYPALHVFSTFFYPKLKS------------GGYQAVKRWTKG   97 (226)
T ss_dssp             TTEEEEHHHHGGGSTTCCCCHHHHHHHHHHHHHHHHHHTCCCEEECCTTHHHHHHH------------HTGGGTGGGGTT
T ss_pred             CCceeEHHHHHhcCCCcccccHHHHHHHHHHHHhhhhccCCceEEecHHHHHHHhh------------ccHHHHHHHHhc
Confidence            37899999999999999999999999999999887666678999999999999975            357789999999


Q ss_pred             ccccccceEEEeeccCcceEEEEEecCCCcccchhhhhccCCCCCEEEEEeCCCCCChhHHHHHHHHHHHHHHhhcCCCC
Q 008357          445 VDIFGKDYIFIPVNFNLHWSLIVICHPGDVASFKVEDLKRSEKVPCILHMDSIKGTHAGLKNLVQSYLCEEWKERHKDTS  524 (568)
Q Consensus       445 vdLfekd~IfIPIN~~~HWsLvVI~~P~~~~~~~ded~~~~~k~~~I~~lDSL~~s~~~i~~~L~~yL~~E~k~K~~~~~  524 (568)
                      .+++++++||||||.+.||+|+||+.+.                ++|+|||||++.+......++.||..+++.+.+...
T Consensus        98 ~~l~~~~~i~iPin~~~HW~L~vi~~~~----------------~~i~~~DSl~~~~~~~~~~i~~~l~~~~~~~~~~~~  161 (226)
T d1th0a_          98 VNLFEQEIILVPIHRKVHWSLVVIDLRK----------------KCLKYLDSMGQKGHRICEILLQYLQDESKTKRNSDL  161 (226)
T ss_dssp             CCGGGSSEEEEEEEETTEEEEEEEETTT----------------TEEEEECTTCCCCHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred             cCcccCCEEEEeEEcCCceEEEEEEecc----------------ceEEEeccccCCChHHHHHHHHHHHHHHHHhhCCCc
Confidence            9999999999999999999999999763                699999999999888888899999999988766543


Q ss_pred             ccccccccccccccCCCCCcCCCC-chhhHHHHHHHHHhh
Q 008357          525 EDVSSKFLNFRFIPLEVLKLILHF-WGSLKWGYKMEFPLK  563 (568)
Q Consensus       525 ~di~s~w~n~~~v~~~vPQQ~Ng~-CGvfVL~ym~~fl~k  563 (568)
                       +. ..|....+.+.++|||.||+ ||+|||+||+++...
T Consensus       162 -~~-~~~~~~~~~~~~~pqQ~N~~DCGvfvl~~~~~~~~~  199 (226)
T d1th0a_         162 -NL-LEWTHHSMKPHEIPQQLNGSDCGMFTCKYADYISRD  199 (226)
T ss_dssp             -CG-GGCEEEECCTTTSCCCCSSSCHHHHHHHHHHHHTTT
T ss_pred             -Cc-ccceeeeeccCCCCCCCCCCCHHHHHHHHHHHHhCC
Confidence             22 24554456678999999997 999999999998754
>d2iy1a1 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2bkra1 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SENP8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure