Citrus Sinensis ID: 008389
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 567 | 2.2.26 [Sep-21-2011] | |||||||
| Q8VZF1 | 569 | Acetate/butyrate--CoA lig | yes | no | 0.992 | 0.989 | 0.788 | 0.0 | |
| F4HUK6 | 556 | Probable acyl-activating | no | no | 0.948 | 0.967 | 0.526 | 1e-170 | |
| Q9SEY5 | 603 | Probable acyl-activating | no | no | 0.970 | 0.912 | 0.498 | 1e-160 | |
| Q9FFE6 | 552 | Probable acyl-activating | no | no | 0.955 | 0.981 | 0.481 | 1e-150 | |
| Q9FFE9 | 550 | Probable acyl-activating | no | no | 0.955 | 0.985 | 0.484 | 1e-150 | |
| Q9SS01 | 580 | Benzoate--CoA ligase, per | no | no | 0.957 | 0.936 | 0.471 | 1e-146 | |
| Q9SS00 | 578 | Probable acyl-activating | no | no | 0.952 | 0.934 | 0.475 | 1e-146 | |
| Q9LPK7 | 549 | Probable acyl-activating | no | no | 0.941 | 0.972 | 0.468 | 1e-146 | |
| Q9C8D4 | 572 | Butyrate--CoA ligase AAE1 | no | no | 0.952 | 0.944 | 0.475 | 1e-145 | |
| Q9LQS1 | 544 | Probable acyl-activating | no | no | 0.954 | 0.994 | 0.469 | 1e-144 |
| >sp|Q8VZF1|AEE7_ARATH Acetate/butyrate--CoA ligase AAE7, peroxisomal OS=Arabidopsis thaliana GN=AAE7 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 947 bits (2449), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/563 (78%), Positives = 495/563 (87%)
Query: 5 KGIDDLPKNAANYMALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCK 64
+ IDDLPK ANY ALTPLWFLDRAA VHPTR SV+HGS YTW QTY RCRRLASAL
Sbjct: 7 RDIDDLPKIPANYTALTPLWFLDRAAVVHPTRKSVIHGSREYTWRQTYDRCRRLASALAD 66
Query: 65 RSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVD 124
RSIG G TVAIIAPNIPA+YEAHFGVPM GAVLN VNIRLNAPT+AFLL HS S+VIMVD
Sbjct: 67 RSIGPGSTVAIIAPNIPAMYEAHFGVPMCGAVLNCVNIRLNAPTVAFLLSHSQSSVIMVD 126
Query: 125 QEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDP 184
QE+F LAE++L++MEEK+ FK PLLIVIGD +C P+ L AL +GA+EYE FL TGDP
Sbjct: 127 QEFFTLAEDSLRLMEEKAGSSFKRPLLIVIGDHTCAPESLNRALSKGAIEYEDFLATGDP 186
Query: 185 QFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLP 244
+ W+PP DEWQSIALGYTSGTTASPKGVVL HRGAY+M+LS LIWGM +GAVYLWTLP
Sbjct: 187 NYPWQPPADEWQSIALGYTSGTTASPKGVVLHHRGAYIMALSNPLIWGMQDGAVYLWTLP 246
Query: 245 MFHCNGWCYTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSED 304
MFHCNGWC+ WSLA L GTSICLRQVTAK VYS IAKY VTHFCAAPVVLN+IVNAP ED
Sbjct: 247 MFHCNGWCFPWSLAVLSGTSICLRQVTAKEVYSMIAKYKVTHFCAAPVVLNAIVNAPKED 306
Query: 305 TILPLPHVVHVNTAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPP 364
TILPLPH VHV TAGAAPPPSVL +M+QKGF V HTYGLSETYGPSTVCAWKPEWDSLPP
Sbjct: 307 TILPLPHTVHVMTAGAAPPPSVLFSMNQKGFRVAHTYGLSETYGPSTVCAWKPEWDSLPP 366
Query: 365 ETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANE 424
ETQA++ ARQGVR+ G+E+LDVIDT+T +PVPADGKT GEIV GN+VMKGYLKNP+AN+
Sbjct: 367 ETQAKLNARQGVRYTGMEQLDVIDTQTGKPVPADGKTAGEIVFRGNMVMKGYLKNPEANK 426
Query: 425 ETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVV 484
ETFA GW+H+GD+ VKHPDNYIEIKDRSKD+IISGGENISSVEVEN++Y HPAVLEASVV
Sbjct: 427 ETFAGGWFHSGDIAVKHPDNYIEIKDRSKDVIISGGENISSVEVENVVYHHPAVLEASVV 486
Query: 485 ARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGPLPKTAT 544
AR DERW ESPCAFVTLK + +K ++ +LA+DIMKFCR K+PAYWVPKS+VFGPLPKTAT
Sbjct: 487 ARPDERWQESPCAFVTLKSDYEKHDQNKLAQDIMKFCREKLPAYWVPKSVVFGPLPKTAT 546
Query: 545 GKIQKHVLRAKAKEMGPVRKSKL 567
GKIQKH+LR KAKEMGPV +S+L
Sbjct: 547 GKIQKHILRTKAKEMGPVPRSRL 569
|
Peroxisomal acetate/butyrate--CoA ligase that is probably involved in the activation of exogenous acetate for entry into the glyoxylate cycle. May play a role to prevent carbon loss from peroxisomes during lipid mobilization. In vitro, is active with both acetate and butyrate. Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 2 |
| >sp|F4HUK6|AAE1_ARATH Probable acyl-activating enzyme 1, peroxisomal OS=Arabidopsis thaliana GN=AAE1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 598 bits (1542), Expect = e-170, Method: Compositional matrix adjust.
Identities = 294/558 (52%), Positives = 385/558 (68%), Gaps = 20/558 (3%)
Query: 12 KNAANYMALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGC 71
K+ ANY+ LTP+ FLDR+A V+ R S+V+GS +YTW QT RC R+ASAL + I G
Sbjct: 8 KSPANYVPLTPISFLDRSAVVYADRVSIVYGSVKYTWRQTRDRCVRIASALSQLGISTGD 67
Query: 72 TVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLA 131
V+++APN+PA+ E HFGVPMAGA+L +NIR ++ +A LL HS + VI D ++ ++A
Sbjct: 68 VVSVLAPNVPAMVELHFGVPMAGALLCTLNIRHDSSLVAVLLRHSGTKVIFADHQFLQIA 127
Query: 132 EEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGA-----VEYEKFLQTGDPQF 186
E A +I+ K + K P+L++I P+ L ++ R +EYE + G F
Sbjct: 128 EGACEILSNKGD---KVPILVLI------PEPLTQSVSRKKRSEEMMEYEDVVAMGKSDF 178
Query: 187 DWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMF 246
+ P DE +I++ YTSGTT+SPKGVV SHRGAYL SL+ L+ M+ YLWT PMF
Sbjct: 179 EVIRPTDECDAISVNYTSGTTSSPKGVVYSHRGAYLNSLAAVLLNEMHSSPTYLWTNPMF 238
Query: 247 HCNGWCYTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTI 306
HCNGWC W + A+ GT+ICLR VTAKA++ I+++ VTH AP +LN I+NAP E
Sbjct: 239 HCNGWCLLWGVTAIGGTNICLRNVTAKAIFDNISQHKVTHMGGAPTILNMIINAP-ESEQ 297
Query: 307 LPLPHVVHVNTAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPET 366
PLP V T A PP V+ M + GF + H+YGL+ETYGP T+C WKPEWDSLP E
Sbjct: 298 KPLPGKVSFITGAAPPPAHVIFKMEELGFSMFHSYGLTETYGPGTICTWKPEWDSLPREE 357
Query: 367 QARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEET 426
QA+MKARQGV +GLE++ V D T + +PADG T+GE+V GN VM GYLKNP+A +E
Sbjct: 358 QAKMKARQGVNHLGLEEIQVKDPVTMRTLPADGVTMGEVVFRGNTVMNGYLKNPEATKEA 417
Query: 427 FANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVAR 486
F GW+ +GDLGVKHPD YIE+KDRSKDIIISGGENISS+EVE+ ++ HP VLEA+VVAR
Sbjct: 418 FKGGWFWSGDLGVKHPDGYIELKDRSKDIIISGGENISSIEVESTLFTHPCVLEAAVVAR 477
Query: 487 ADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGPLPKTATGK 546
DE WGE+ CAFV L K + AE+++ +CR ++P Y P+SIVF LPKT+TGK
Sbjct: 478 PDEYWGETACAFVKL-----KDGSKASAEELISYCRDRLPHYMAPRSIVFEDLPKTSTGK 532
Query: 547 IQKHVLRAKAKEMGPVRK 564
+QK VLR KAK + + K
Sbjct: 533 VQKFVLRTKAKALVSLSK 550
|
May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q9SEY5|AAE2_ARATH Probable acyl-activating enzyme 2 OS=Arabidopsis thaliana GN=AAE2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 565 bits (1457), Expect = e-160, Method: Compositional matrix adjust.
Identities = 282/566 (49%), Positives = 375/566 (66%), Gaps = 16/566 (2%)
Query: 5 KGIDDLPKNAANYMALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCK 64
+ I+ L ++ AN+ L+P+ FL+R+A V+ RTS+V GS ++TW QTYQRC RLASAL
Sbjct: 46 RTIEGLLRSPANFSPLSPITFLERSAKVYRDRTSLVFGSVKHTWFQTYQRCLRLASALTN 105
Query: 65 RSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVD 124
I G VA +APN+PA++E HF VPMAG +L +N RL+ T++ LL HS + ++ VD
Sbjct: 106 LGISRGDVVAALAPNVPAMHELHFAVPMAGLILCPLNTRLDPSTLSVLLAHSEAKILFVD 165
Query: 125 QEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDL--------KYALGRGAVEYE 176
+ ++A AL ++ + R L+++ D D KY+ EYE
Sbjct: 166 HQLLEIAHGALDLLAKSDKTRKSLKLVLISQSNDDDDSDEDSSSTFASKYSFD---YEYE 222
Query: 177 KFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEG 236
L++GD +F+ P+ EW I++ YTSGTT+ PKGVV SHRGAYL SL+ + M+
Sbjct: 223 TLLKSGDSEFEIIKPRCEWDPISINYTSGTTSRPKGVVYSHRGAYLNSLATVFLHQMSVY 282
Query: 237 AVYLWTLPMFHCNGWCYTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNS 296
VYLWT+PMFHCNGWC W +AA GT+ICLR+V+ K ++ IA + VTH AP VLN
Sbjct: 283 PVYLWTVPMFHCNGWCLVWGVAAQGGTNICLRKVSPKMIFKNIAMHKVTHMGGAPTVLNM 342
Query: 297 IVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWK 356
IVN + PLPH V + T G+ P P +L M + GF+V+H YGL+ETYGP T C WK
Sbjct: 343 IVNYTVTEHK-PLPHRVEIMTGGSPPLPQILAKMEELGFNVSHLYGLTETYGPGTHCVWK 401
Query: 357 PEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGY 416
PEWDSL E + ++KARQGV+ +GLE LDV D T + VP DG T+GE++ GN VM GY
Sbjct: 402 PEWDSLSLEERTKLKARQGVQHLGLEGLDVKDPLTMETVPDDGLTMGEVMFRGNTVMSGY 461
Query: 417 LKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHP 476
K+ +A + F W+H+GDL VK+PD YIEIKDR KD+IISGGENISSVEVE ++ H
Sbjct: 462 FKDIEATRKAFEGDWFHSGDLAVKYPDGYIEIKDRLKDVIISGGENISSVEVERVLCSHQ 521
Query: 477 AVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVF 536
AVLEA+VVAR D WG++PC FV LK D E+I+ FCR +P Y PK+IVF
Sbjct: 522 AVLEAAVVARPDHHWGQTPCGFVKLKEGFDTIK----PEEIIGFCRDHLPHYMAPKTIVF 577
Query: 537 GPLPKTATGKIQKHVLRAKAKEMGPV 562
G +PKT+TGK+QK++LR KA EMG +
Sbjct: 578 GDIPKTSTGKVQKYLLRKKADEMGSL 603
|
May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q9FFE6|AAE5_ARATH Probable acyl-activating enzyme 5, peroxisomal OS=Arabidopsis thaliana GN=AAE5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 532 bits (1370), Expect = e-150, Method: Compositional matrix adjust.
Identities = 268/557 (48%), Positives = 372/557 (66%), Gaps = 15/557 (2%)
Query: 14 AANYMALTPLWFLDRAATVHPTRTSVVHGS-TRYTWLQTYQRCRRLASALCKRSIGLGCT 72
AAN LTP+ FL+RAATV+ TS+V+GS T YTW +T RC R+AS+L IG
Sbjct: 8 AANSPPLTPIGFLERAATVYGDCTSIVYGSNTVYTWRETNLRCLRVASSLSSIGIGRSDV 67
Query: 73 VAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAE 132
V++++PN PA+YE F VPM+GA+LN +N RL+A T++ LL H S ++ VD LA
Sbjct: 68 VSVLSPNTPAMYELQFAVPMSGAILNNINTRLDARTVSVLLRHCGSKLLFVDVFSVDLAV 127
Query: 133 EALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYA-LGRGAVEYEKFLQTGDPQFDWKPP 191
EA+ +M PP+L+ I D+ + D A + + Y+ + GD F W P
Sbjct: 128 EAISMMTTD------PPILVFIADKEEEGGDADVADRTKFSYTYDDLIHRGDLDFKWIRP 181
Query: 192 QDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGW 251
+ EW + L YTSGTT++PKGVV HRG ++MS+ + W + + VYLWTLP+FH NGW
Sbjct: 182 ESEWDPVVLNYTSGTTSAPKGVVHCHRGIFVMSIDSLIDWTVPKNPVYLWTLPIFHANGW 241
Query: 252 CYTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPH 311
Y W +AA+ GT++CLR+ A +Y I +GVTH C APVVLN +++A +E PL
Sbjct: 242 SYPWGIAAVGGTNVCLRKFDAPLIYRLIRDHGVTHMCGAPVVLN-MLSATNE--FQPLNR 298
Query: 312 VVHVNTAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMK 371
V++ TAGA PP +VL GF ++H YGL+ET G + CAWKP+W+ LP +AR+K
Sbjct: 299 PVNILTAGAPPPAAVLLRAESIGFVISHGYGLTETAGLNVSCAWKPQWNRLPASDRARLK 358
Query: 372 ARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANGW 431
ARQGVR +G ++DV+D + + V +G+T+GEIVM G+ +M GYLK+P E+ NGW
Sbjct: 359 ARQGVRTVGFTEIDVVDPESGRSVERNGETVGEIVMRGSSIMLGYLKDPVGTEKALKNGW 418
Query: 432 YHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERW 491
++TGD+GV H D Y+EIKDRSKDIII+GGEN+SSVEVE ++Y +PAV E +VVAR D W
Sbjct: 419 FYTGDVGVIHSDGYLEIKDRSKDIIITGGENVSSVEVETVLYTNPAVNEVAVVARPDVFW 478
Query: 492 GESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVF-GPLPKTATGKIQKH 550
GE+PCAFV+LK + ++ +++++CR KMP Y VPK++ F LPKT+TGK+ K
Sbjct: 479 GETPCAFVSLKSGL---TQRPTEVEMIEYCRKKMPKYMVPKTVSFVDELPKTSTGKVMKF 535
Query: 551 VLRAKAKEMGPVRKSKL 567
VLR AK+MG R S++
Sbjct: 536 VLREIAKKMGTTRLSRM 552
|
May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q9FFE9|AAE6_ARATH Probable acyl-activating enzyme 6 OS=Arabidopsis thaliana GN=AAE6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 531 bits (1369), Expect = e-150, Method: Compositional matrix adjust.
Identities = 270/557 (48%), Positives = 373/557 (66%), Gaps = 15/557 (2%)
Query: 7 IDDLPKNAANYMALTPLWFLDRAATVHPTRTSVVHGS-TRYTWLQTYQRCRRLASALCKR 65
++++ AAN LTP+ FL+RAATV+ TS+V+GS T YTW +T RC R+AS+L
Sbjct: 1 MEEMKPCAANSPPLTPIGFLERAATVYGDCTSIVYGSNTVYTWRETNLRCLRVASSLSSI 60
Query: 66 SIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQ 125
IG V++++PN PA+YE F VPM+GA+LN +N RL+A T++ LL H S ++ VD
Sbjct: 61 GIGRSDVVSVLSPNTPAMYELQFAVPMSGAILNNINTRLDARTVSVLLRHCESKLLFVDV 120
Query: 126 EYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYA-LGRGAVEYEKFLQTGDP 184
LA EA+ +M PP+L+VI D+ + A L + + Y+ ++ GDP
Sbjct: 121 FSVDLAVEAVSMMTTD------PPILVVIADKEEEGGVADVADLSKFSYTYDDLIERGDP 174
Query: 185 QFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLP 244
F W P+ EW + L YTSGTT++PKGVV HRG ++MS+ + W + + VYLWTLP
Sbjct: 175 GFKWIRPESEWDPVVLNYTSGTTSAPKGVVHCHRGIFVMSVDSLIDWAVPKNPVYLWTLP 234
Query: 245 MFHCNGWCYTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSED 304
+FH NGW W +AA+ GT++CLR+ A +Y I +GVTH C APVVLN +++A E
Sbjct: 235 IFHSNGWTNPWGIAAVGGTNVCLRKFDAPLIYRLIRDHGVTHMCGAPVVLN-MLSATQES 293
Query: 305 TILPLPHVVHVNTAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPP 364
PL H V++ TAG+ PP +VL GF ++H YGL+ET G CAWKP+W+ LP
Sbjct: 294 Q--PLNHPVNILTAGSPPPATVLLRAESIGFVISHGYGLTETAGVIVSCAWKPKWNHLPA 351
Query: 365 ETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANE 424
+AR+KARQGVR +G ++DV+D + V +G+T+GEIVM G+ VM GYLK+P E
Sbjct: 352 SDRARLKARQGVRTVGFTEIDVVDPESGLSVERNGETVGEIVMRGSSVMLGYLKDPVGTE 411
Query: 425 ETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVV 484
+ NGW++TGD+GV H D Y+EIKDRSKDIII+GGEN+SSVEVE ++Y PAV E +VV
Sbjct: 412 KALKNGWFYTGDVGVIHSDGYLEIKDRSKDIIITGGENVSSVEVETVLYTIPAVNEVAVV 471
Query: 485 ARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVF-GPLPKTA 543
AR DE WGE+PCAFV+LK + + + E++M++CR KMP Y VPK++ F LPK++
Sbjct: 472 ARPDEFWGETPCAFVSLK---NGFSGKPTEEELMEYCRKKMPKYMVPKTVSFMDELPKSS 528
Query: 544 TGKIQKHVLRAKAKEMG 560
TGK+ K VLR AK+MG
Sbjct: 529 TGKVTKFVLRDIAKKMG 545
|
May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q9SS01|AAE20_ARATH Benzoate--CoA ligase, peroxisomal OS=Arabidopsis thaliana GN=AAE20 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 520 bits (1339), Expect = e-146, Method: Compositional matrix adjust.
Identities = 265/562 (47%), Positives = 359/562 (63%), Gaps = 19/562 (3%)
Query: 7 IDDLPKNAANYMALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRS 66
+DDL AN + LTP+ FL RA+ +P RTS+++G TR+TW QTY RC RLA++L +
Sbjct: 1 MDDLALCEANNVPLTPMTFLKRASECYPNRTSIIYGKTRFTWPQTYDRCCRLAASLISLN 60
Query: 67 IGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQE 126
I V+++APN PA+YE HF VPMAGAVLN +N RL+A +IA +L H+ ++ +D+
Sbjct: 61 ISKNDVVSVMAPNTPALYEMHFAVPMAGAVLNPINTRLDATSIAAILRHAKPKILFLDRS 120
Query: 127 YFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQF 186
+ LA E+L ++ + + P + I E+ PK + ++YE +Q G+P
Sbjct: 121 FEALARESLHLLSSEDSNLNLPVIFI---HENDFPKRASFE----ELDYECLIQRGEPTP 173
Query: 187 DWKPP----QDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWT 242
QDE I+L YTSGTTA PKGVV+SHRGAYL +LS + W M VYLWT
Sbjct: 174 SMVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLCTLSAIIGWEMGTCPVYLWT 233
Query: 243 LPMFHCNGWCYTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPS 302
LPMFHCNGW +TW AA GTS+C+R VTA +Y I + VTH C P V N ++ S
Sbjct: 234 LPMFHCNGWTFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNS 293
Query: 303 EDTILPLPHVVHVNTAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSL 362
D + P VHV T G+ PP +++ + + GF V H YG +E GP C W+ EW+ L
Sbjct: 294 LD-LSPRSGPVHVLTGGSPPPAALVKKVQRLGFQVMHAYGQTEATGPILFCEWQDEWNRL 352
Query: 363 PPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKA 422
P Q +KARQG+ +GL +DV + TQ+ P DGKT+GEI++ G+ +MKGYLKNPKA
Sbjct: 353 PENQQMELKARQGISILGLADVDVKNKETQKSAPRDGKTMGEILIKGSSIMKGYLKNPKA 412
Query: 423 NEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEAS 482
E F +GW +TGD+GV HPD ++EIKDRSKDIIISGGENISSVEVEN++Y +P VLE +
Sbjct: 413 TFEAFKHGWLNTGDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYKYPKVLETA 472
Query: 483 VVARADERWGESPCAFVTLKP-----EVDKSNEQQLAE-DIMKFCRAKMPAYWVPKSIVF 536
VVA WGE+PCAFV L+ + D+ ++ Q E +++++CR +P + P+ +VF
Sbjct: 473 VVAMPHPTWGETPCAFVVLEKSETTIKEDRVDKFQTRERNLIEYCRENLPHFMCPRKVVF 532
Query: 537 -GPLPKTATGKIQKHVLRAKAK 557
LPK GKI K LR AK
Sbjct: 533 LEELPKNGNGKILKPKLRDIAK 554
|
Benzoate--CoA ligase involved in benzoyloxyglucosinolate biosynthesis in seeds. Glucosinolates are secondary metabolites involved in pathogen and insect defense of cruciferous plants. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 2 EC: 5 |
| >sp|Q9SS00|AAE12_ARATH Probable acyl-activating enzyme 12, peroxisomal OS=Arabidopsis thaliana GN=AAE12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 520 bits (1339), Expect = e-146, Method: Compositional matrix adjust.
Identities = 268/564 (47%), Positives = 357/564 (63%), Gaps = 24/564 (4%)
Query: 7 IDDLPKNAANYMALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRS 66
+D+L AN + LTP+ FL RA+ +P RTS+++G TR+TW QTY RC RLA++L +
Sbjct: 1 MDNLALCEANNVPLTPITFLKRASECYPNRTSIIYGKTRFTWPQTYDRCCRLAASLISLN 60
Query: 67 IGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQE 126
IG V+++APN PA+YE HF VPMAGAVLN +N RL+A +IA +L H+ ++ + +
Sbjct: 61 IGKNDVVSVVAPNTPAMYEMHFAVPMAGAVLNPINTRLDATSIAAILRHAKPKILFIYRS 120
Query: 127 YFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQ- 185
+ LA E L+++ + + P + I D + +YE +Q G+P
Sbjct: 121 FEPLAREILQLLSSEDSNLNLPVIFI-------HEIDFPKRVSSEESDYECLIQRGEPTP 173
Query: 186 ---FDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWT 242
QDE I+L YTSGTTA PKGVV+SHRGAYL +LS + W M VYLWT
Sbjct: 174 LLLARMFCIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPVYLWT 233
Query: 243 LPMFHCNGWCYTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPS 302
LPMFHCNGW +TW AA GTS+C+R VTA +Y I + VTH C P V N ++ S
Sbjct: 234 LPMFHCNGWTFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNS 293
Query: 303 EDTILPLPHV---VHVNTAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEW 359
D L H VHV T G+ PP +++ + + GF V H YGL+E GP C W+ EW
Sbjct: 294 LD----LSHRSGPVHVLTGGSPPPAALVKKVQRLGFQVMHAYGLTEATGPVLFCEWQDEW 349
Query: 360 DSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKN 419
+ LP Q +KARQG+ +GL ++DV + TQ+ VP DGKT+GEIVM G+ +MKGYLKN
Sbjct: 350 NRLPENQQMELKARQGLSILGLTEVDVRNKETQESVPRDGKTMGEIVMKGSSIMKGYLKN 409
Query: 420 PKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVL 479
PKA E F +GW ++GD+GV HPD ++EIKDRSKDIIISGGENISSVEVEN++Y +P VL
Sbjct: 410 PKATYEAFKHGWLNSGDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENIIYKYPKVL 469
Query: 480 EASVVARADERWGESPCAFVTL-KPEVDKSN-EQQLA---EDIMKFCRAKMPAYWVPKSI 534
E +VVA WGE+PCAFV L K E + + E +L D++++CR +P + P+ +
Sbjct: 470 ETAVVAMPHPTWGETPCAFVVLEKGETNNEDREDKLVTKERDLIEYCRENLPHFMCPRKV 529
Query: 535 VF-GPLPKTATGKIQKHVLRAKAK 557
VF LPK GKI K LR AK
Sbjct: 530 VFLDELPKNGNGKILKPKLRDIAK 553
|
May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q9LPK7|AEE10_ARATH Probable acyl-activating enzyme 10 OS=Arabidopsis thaliana GN=AEE10 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 517 bits (1332), Expect = e-146, Method: Compositional matrix adjust.
Identities = 258/551 (46%), Positives = 364/551 (66%), Gaps = 17/551 (3%)
Query: 15 ANYMALTPLWFLDRAATVHPTRTSVVH-GSTRYTWLQTYQRCRRLASALCKRSIGL--GC 71
+N LT L FLDRAA+V+ S++H +T +TW +T+ RC R+ASAL SIG+ G
Sbjct: 9 SNSTPLTVLGFLDRAASVYGDCPSILHTANTVHTWSETHNRCLRIASALTSSSIGIKQGQ 68
Query: 72 TVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLA 131
V+++ PN+P++YE F VPM+GA+LN +N RL+A ++ LL HS S ++ VD L
Sbjct: 69 VVSVVGPNVPSVYELQFAVPMSGAILNNINPRLDAHALSVLLRHSESRLVFVDHRSISLV 128
Query: 132 EEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPP 191
EA+ + + KP L+++ D+ D L YE+ ++ G+ +F W P
Sbjct: 129 LEAVSLFTQHE----KPHLVLLDDDQENDSSSASDFLD----TYEEIMERGNSRFKWIRP 180
Query: 192 QDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGW 251
Q EWQ + L YTSGTT+SPKGVVLSHR +++++S L W + VYLWTLPMFH NGW
Sbjct: 181 QTEWQPMVLNYTSGTTSSPKGVVLSHRAIFMLTVSSLLDWSVPNRPVYLWTLPMFHANGW 240
Query: 252 CYTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPH 311
YTW AA+ T+IC R+V A +Y+ I K+ VTH CAAP+VLN ++N P PL +
Sbjct: 241 GYTWGTAAVGATNICTRRVDAPTIYNLIDKHNVTHMCAAPMVLNMLINYPLST---PLKN 297
Query: 312 VVHVNTAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMK 371
V V T+GA PP +++ GF+V+H+YGL+ET GP CAWKP+WD L P +AR+K
Sbjct: 298 PVQVMTSGAPPPATIISRAESLGFNVSHSYGLTETSGPVVSCAWKPKWDHLDPLERARLK 357
Query: 372 ARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETF-ANG 430
+RQGVR +G ++DV D +T + V DG ++GEIV G+ VM GY K+P+ +G
Sbjct: 358 SRQGVRTLGFTEVDVRDRKTGKSVKHDGVSVGEIVFRGSSVMLGYYKDPQGTAACMREDG 417
Query: 431 WYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADER 490
W+++GD+GV H D Y+EIKDRSKD+II GGENISS E+E ++Y +P V EA+VVA+ D+
Sbjct: 418 WFYSGDIGVIHKDGYLEIKDRSKDVIICGGENISSAEIETVLYTNPVVKEAAVVAKPDKM 477
Query: 491 WGESPCAFVTLKPEVDKSNEQQLAE-DIMKFCRAKMPAYWVPKSIVFG-PLPKTATGKIQ 548
WGE+PCAFV+LK + + + E +I +FC+ K+P Y VP+ ++F LPKT+TGKIQ
Sbjct: 478 WGETPCAFVSLKCDNNGDGSVPVTEREIREFCKTKLPKYMVPRKVIFQEELPKTSTGKIQ 537
Query: 549 KHVLRAKAKEM 559
K +LR AK +
Sbjct: 538 KFLLRQMAKTL 548
|
May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q9C8D4|AAE11_ARATH Butyrate--CoA ligase AAE11, peroxisomal OS=Arabidopsis thaliana GN=AAE11 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 515 bits (1327), Expect = e-145, Method: Compositional matrix adjust.
Identities = 267/561 (47%), Positives = 357/561 (63%), Gaps = 21/561 (3%)
Query: 7 IDDLPKNAANYMALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRS 66
+D+L AN + LTP+ FL RA+ +P RTS+++G TR+TW QTY RC RLA++L +
Sbjct: 1 MDNLVLCEANNVPLTPITFLKRASECYPNRTSIIYGQTRFTWPQTYDRCCRLAASLLSLN 60
Query: 67 IGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQE 126
I V+I+APN+PA+YE HF VPM GAVLN +N RL+A TIA +L H+ ++ VD E
Sbjct: 61 ITRNDVVSILAPNVPAMYEMHFSVPMTGAVLNPINTRLDAKTIAIILRHAEPKILFVDYE 120
Query: 127 YFKLAEEALKIMEEKSNGRFKP-PLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQ 185
+ L +E L+++ + +P P +I+I + K L +YE ++ G+P
Sbjct: 121 FAPLIQEVLRLIPTYQS---QPHPRIILINEIDSTTKPFSKEL-----DYEGLIRKGEPT 172
Query: 186 FDWKPP----QDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLW 241
+E I+L YTSGTTA PKGVV+SH+GAYL +LS + W M VYLW
Sbjct: 173 PSSSASMFRVHNEHDPISLNYTSGTTADPKGVVISHQGAYLSALSSIIGWEMGIFPVYLW 232
Query: 242 TLPMFHCNGWCYTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAP 301
TLPMFHCNGW +TWS+AA GT++C+R VTA +Y I +GVTH P V ++
Sbjct: 233 TLPMFHCNGWTHTWSVAARGGTNVCIRHVTAPEIYKNIELHGVTHMSCVPTVFRFLLEGS 292
Query: 302 SEDTILPLPHVVHVNTAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDS 361
D P V V T G++PP ++ + Q GFHV H YGL+E GP C W+ EW+
Sbjct: 293 RTDQS-PKSSPVQVLTGGSSPPAVLIKKVEQLGFHVMHGYGLTEATGPVLFCEWQDEWNK 351
Query: 362 LPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPK 421
LP Q ++ RQGVR + L +DV +T+T + VP DGKT+GEIV+ G+ +MKGYLKNPK
Sbjct: 352 LPEHQQIELQQRQGVRNLTLADVDVKNTKTLESVPRDGKTMGEIVIKGSSLMKGYLKNPK 411
Query: 422 ANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEA 481
A E F +GW +TGD+GV HPD Y+EIKDRSKDIIISGGENISS+EVE ++Y++ VLEA
Sbjct: 412 ATSEAFKHGWLNTGDIGVIHPDGYVEIKDRSKDIIISGGENISSIEVEKVLYMYQEVLEA 471
Query: 482 SVVARADERWGESPCAFVTLKPEVDKSNEQQLAE--DIMKFCRAKMPAYWVPKSIV-FGP 538
+VVA WGE+PCAFV LK K E + D++K+CR MP + PK +V F
Sbjct: 472 AVVAMPHPLWGETPCAFVVLK----KGEEGLVTSEGDLIKYCRENMPHFMCPKKVVFFQE 527
Query: 539 LPKTATGKIQKHVLRAKAKEM 559
LPK + GKI K LR AK +
Sbjct: 528 LPKNSNGKILKSKLRDIAKAL 548
|
Butyrate--CoA ligase that is active in vitro with medium-chain fatty acids, with a preference for hexanoate and octanoate. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 2 |
| >sp|Q9LQS1|AAE8_ARATH Probable acyl-activating enzyme 8 OS=Arabidopsis thaliana GN=AAE8 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 511 bits (1317), Expect = e-144, Method: Compositional matrix adjust.
Identities = 261/556 (46%), Positives = 367/556 (66%), Gaps = 15/556 (2%)
Query: 7 IDDLPKNAANYMALTPLWFLDRAATVHPTRTSVVHG-STRYTWLQTYQRCRRLASALCKR 65
++DL +AAN + LT L FL+RAATV+ TS+V+G ST YTW +T RC +ASAL
Sbjct: 1 MEDLKPSAANSLPLTLLGFLERAATVYGDCTSIVYGNSTVYTWRETNHRCLCVASALSSI 60
Query: 66 SIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQ 125
IG V++++ N P +YE F VPM+GA+LN +N RL+A T++ LL H S ++ VD
Sbjct: 61 GIGRSDVVSVLSANTPEMYELQFSVPMSGAILNNINTRLDARTVSVLLRHCESKLLFVDF 120
Query: 126 EYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYA-LGRGAVEYEKFLQTGDP 184
Y LA EA+ ++ PP+L++I +E + + + Y + G+P
Sbjct: 121 FYSDLAVEAITML-------LNPPILVLIANEEEEEGGAEVTERSKFCYLYSDLITRGNP 173
Query: 185 QFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLP 244
F W P EW I + YTSGTT+SPKGVV HRG ++M+L W + + VYLWTLP
Sbjct: 174 DFKWIRPGSEWDPIVVNYTSGTTSSPKGVVHCHRGIFVMTLDSLTDWAVPKTPVYLWTLP 233
Query: 245 MFHCNGWCYTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSED 304
+FH NGW Y W +AA+ GT++C+R++ A ++Y I +GVTH AP+VL + + S++
Sbjct: 234 IFHANGWTYPWGIAAVGGTNVCVRKLHAPSIYHLIRDHGVTHMYGAPIVLQ--ILSASQE 291
Query: 305 TILPLPHVVHVNTAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPP 364
+ PL V+ TAG++PP +VL GF V+H YGL+ET G CAWKP W+ LP
Sbjct: 292 SDQPLKSPVNFLTAGSSPPATVLLRAESLGFIVSHGYGLTETAGVIVSCAWKPNWNRLPA 351
Query: 365 ETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANE 424
QA++K+RQGVR +G ++DV+D + + V DG+T+GEIV+ G+ +M GYLKNP +
Sbjct: 352 SDQAQLKSRQGVRTVGFSEIDVVDPESGRSVERDGETVGEIVLRGSSIMLGYLKNPIGTQ 411
Query: 425 ETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVV 484
+F NGW+ TGDLGV H D Y+EIKDRSKD+IISGGEN+SSVEVE ++Y +PAV EA+VV
Sbjct: 412 NSFKNGWFFTGDLGVIHGDGYLEIKDRSKDVIISGGENVSSVEVEAVLYTNPAVNEAAVV 471
Query: 485 ARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVF-GPLPKTA 543
AR DE WGE+PCAFV+LKP + + + ++I+++C+ KMP Y PK++ F LPKT+
Sbjct: 472 ARPDEFWGETPCAFVSLKPGLTR---KPTDKEIIEYCKYKMPRYMAPKTVSFLEELPKTS 528
Query: 544 TGKIQKHVLRAKAKEM 559
TGKI K +L+ AK M
Sbjct: 529 TGKIIKSLLKEIAKNM 544
|
May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 567 | ||||||
| 449432900 | 567 | PREDICTED: acetate/butyrate--CoA ligase | 1.0 | 1.0 | 0.823 | 0.0 | |
| 255556324 | 564 | AMP dependent ligase, putative [Ricinus | 0.994 | 1.0 | 0.828 | 0.0 | |
| 225431902 | 567 | PREDICTED: medium-chain-fatty-acid--CoA | 1.0 | 1.0 | 0.813 | 0.0 | |
| 356521803 | 568 | PREDICTED: medium-chain-fatty-acid--CoA | 0.991 | 0.989 | 0.813 | 0.0 | |
| 225431900 | 567 | PREDICTED: medium-chain-fatty-acid--CoA | 1.0 | 1.0 | 0.811 | 0.0 | |
| 147854579 | 567 | hypothetical protein VITISV_017128 [Viti | 1.0 | 1.0 | 0.811 | 0.0 | |
| 255556322 | 565 | AMP dependent ligase, putative [Ricinus | 0.994 | 0.998 | 0.815 | 0.0 | |
| 380042372 | 569 | acyl-activating enzyme 6 [Cannabis sativ | 0.992 | 0.989 | 0.808 | 0.0 | |
| 357478905 | 566 | 2-succinylbenzoate-CoA ligase [Medicago | 0.998 | 1.0 | 0.800 | 0.0 | |
| 356564634 | 569 | PREDICTED: medium-chain-fatty-acid--CoA | 0.991 | 0.987 | 0.809 | 0.0 |
| >gi|449432900|ref|XP_004134236.1| PREDICTED: acetate/butyrate--CoA ligase AAE7, peroxisomal-like [Cucumis sativus] gi|449503854|ref|XP_004162208.1| PREDICTED: acetate/butyrate--CoA ligase AAE7, peroxisomal-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1007 bits (2604), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/567 (82%), Positives = 520/567 (91%)
Query: 1 MSMAKGIDDLPKNAANYMALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLAS 60
M+ A+ IDDLPKN ANY ALTPLWF++RAA VHP+R SVVHGS RY W QTYQRCRRLAS
Sbjct: 1 MAGARDIDDLPKNHANYTALTPLWFIERAALVHPSRLSVVHGSRRYNWRQTYQRCRRLAS 60
Query: 61 ALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAV 120
AL RSIG G TVAIIAPNIPAIYEAHFGVPMAGAVLN VNIRLNA TI+FLLGHSASAV
Sbjct: 61 ALSNRSIGAGDTVAIIAPNIPAIYEAHFGVPMAGAVLNCVNIRLNAQTISFLLGHSASAV 120
Query: 121 IMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQ 180
+MVDQE+F LAEEAL I+ K +G +KPPLLIVIGDE+CDP+ LKYAL +GA+EYEKFL+
Sbjct: 121 VMVDQEFFPLAEEALNILAAKGDGHYKPPLLIVIGDENCDPEALKYALSKGAIEYEKFLE 180
Query: 181 TGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYL 240
G+P++ WKPP+DEWQSI LGYTSGTTASPKGVVLSHRGAY+MSLS L+WGMNEGA+YL
Sbjct: 181 IGNPEYAWKPPEDEWQSITLGYTSGTTASPKGVVLSHRGAYVMSLSAGLVWGMNEGAIYL 240
Query: 241 WTLPMFHCNGWCYTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNA 300
WTLPMFHCNGWCYTW+LAALCGTSICLRQVTAKAVYSAIAK+ VTHFCAAPVVLN+IVNA
Sbjct: 241 WTLPMFHCNGWCYTWALAALCGTSICLRQVTAKAVYSAIAKHKVTHFCAAPVVLNTIVNA 300
Query: 301 PSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWD 360
P EDTILPLPHVVHV TAGAAPPPSVL+AMSQKGF +THTYGLSETYGPST+CAWKPEWD
Sbjct: 301 PKEDTILPLPHVVHVMTAGAAPPPSVLYAMSQKGFRITHTYGLSETYGPSTICAWKPEWD 360
Query: 361 SLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNP 420
SLPPE QARM ARQGVR++GLE LDV++T+T QPVP+DGKT+GEIVM GN VMKGYLKNP
Sbjct: 361 SLPPEAQARMNARQGVRYVGLEGLDVVNTQTMQPVPSDGKTVGEIVMRGNAVMKGYLKNP 420
Query: 421 KANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLE 480
KAN+E FANGW+H+GDLGVKHPD YIEIKDRSKDIIISGGENISSVE+EN +Y HPA+LE
Sbjct: 421 KANKEAFANGWFHSGDLGVKHPDGYIEIKDRSKDIIISGGENISSVEIENTLYQHPAILE 480
Query: 481 ASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGPLP 540
SVVARADERWGESPCAFVTLK ++DK +EQ++AEDIMKFC++KMPAYWVPKS+VFG LP
Sbjct: 481 VSVVARADERWGESPCAFVTLKSKIDKGDEQRMAEDIMKFCKSKMPAYWVPKSVVFGELP 540
Query: 541 KTATGKIQKHVLRAKAKEMGPVRKSKL 567
KTATGK+QKH+LRAKAKEMGPV+ SKL
Sbjct: 541 KTATGKVQKHLLRAKAKEMGPVKMSKL 567
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255556324|ref|XP_002519196.1| AMP dependent ligase, putative [Ricinus communis] gi|223541511|gb|EEF43060.1| AMP dependent ligase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 994 bits (2570), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 468/565 (82%), Positives = 513/565 (90%), Gaps = 1/565 (0%)
Query: 3 MAKGIDDLPKNAANYMALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASAL 62
MAK IDDLPK ANY ALTPLWFL+RAATVHPTRT+VVHGS RY+WLQTY RCRRLASAL
Sbjct: 1 MAKDIDDLPKLQANYTALTPLWFLERAATVHPTRTAVVHGSERYSWLQTYHRCRRLASAL 60
Query: 63 CKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIM 122
R+IG G TVA+IAPNIPA+YEAHFGVPMAGAVLN VNIRL+APTIAFLLGHS S V+M
Sbjct: 61 NNRNIGAGSTVAVIAPNIPALYEAHFGVPMAGAVLNTVNIRLDAPTIAFLLGHSRSTVVM 120
Query: 123 VDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTG 182
VDQEYF LAE A KI+ EK N F PPLLIVI DESCDPK L++AL RGA+EYEKFL+ G
Sbjct: 121 VDQEYFHLAEGAFKILAEKEN-NFSPPLLIVIADESCDPKQLQHALKRGAIEYEKFLENG 179
Query: 183 DPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWT 242
DP+F WKPP+DEWQSIALGYTSGTTASPKGVVLSHRGAYLM+LS A+IWG+NEGAVYLWT
Sbjct: 180 DPEFAWKPPEDEWQSIALGYTSGTTASPKGVVLSHRGAYLMALSCAMIWGLNEGAVYLWT 239
Query: 243 LPMFHCNGWCYTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPS 302
LPMFHCNGWCYTWSLAALCGT+ICLRQVTAKAVYSAIA GVTHFCAAPVVLN+IVNAP
Sbjct: 240 LPMFHCNGWCYTWSLAALCGTNICLRQVTAKAVYSAIANQGVTHFCAAPVVLNTIVNAPK 299
Query: 303 EDTILPLPHVVHVNTAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSL 362
E+ ILPLP VVHVNTAGAAPPPS+L AMS+KGF VTHTYGLSETYGPSTVCAWKPEWDSL
Sbjct: 300 EEAILPLPRVVHVNTAGAAPPPSLLFAMSEKGFRVTHTYGLSETYGPSTVCAWKPEWDSL 359
Query: 363 PPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKA 422
PP QAR+ ARQGVR+IGLE LDV+DT+T +PVPADGKT+GEIVM GN+VMKGYLKNP+A
Sbjct: 360 PPIKQARLNARQGVRYIGLEGLDVVDTKTNKPVPADGKTMGEIVMRGNLVMKGYLKNPEA 419
Query: 423 NEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEAS 482
N+E FANGW+H+GDL VKHPD YIEIKDR+KDIIISGGENISS+EVEN++Y HPAV E S
Sbjct: 420 NKEAFANGWFHSGDLAVKHPDGYIEIKDRNKDIIISGGENISSLEVENVLYTHPAVFEVS 479
Query: 483 VVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGPLPKT 542
VVAR DERWGESPCAFVTLK DKS+E +LAEDIMKFC++KMPAYWVPKS+VFGPLPKT
Sbjct: 480 VVAREDERWGESPCAFVTLKEGTDKSDEGRLAEDIMKFCKSKMPAYWVPKSVVFGPLPKT 539
Query: 543 ATGKIQKHVLRAKAKEMGPVRKSKL 567
ATGKIQKHVLR KAK+MGPV+KSKL
Sbjct: 540 ATGKIQKHVLRDKAKKMGPVKKSKL 564
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225431902|ref|XP_002276533.1| PREDICTED: medium-chain-fatty-acid--CoA ligase [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 986 bits (2548), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/567 (81%), Positives = 512/567 (90%)
Query: 1 MSMAKGIDDLPKNAANYMALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLAS 60
M + + IDDLPKNAANY ALTPLWFL+RAA VHP R SV+HGS +YTWLQTYQRCRRLAS
Sbjct: 1 MVVERDIDDLPKNAANYTALTPLWFLERAAVVHPNRKSVIHGSLQYTWLQTYQRCRRLAS 60
Query: 61 ALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAV 120
AL K SIG G TVAIIAPNIPA+YEAHFGVPM+GAV+N VNIRLNAPTIAFLL HS++AV
Sbjct: 61 ALSKYSIGAGSTVAIIAPNIPAMYEAHFGVPMSGAVVNCVNIRLNAPTIAFLLEHSSAAV 120
Query: 121 IMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQ 180
+MVDQE+F LAEEALKI KS FKPPLLIVI DESCDPK L+YAL +G +EYE+FL+
Sbjct: 121 VMVDQEFFPLAEEALKIWSGKSKNDFKPPLLIVIADESCDPKGLEYALRKGVIEYEQFLE 180
Query: 181 TGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYL 240
TGDP+F WKPPQDEWQSIALGYTSGTTASPKGVVL HRGAY+M+LS AL+WGMNEGAVYL
Sbjct: 181 TGDPEFAWKPPQDEWQSIALGYTSGTTASPKGVVLHHRGAYVMALSGALVWGMNEGAVYL 240
Query: 241 WTLPMFHCNGWCYTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNA 300
WTLPMFHCNGWC+TW+LAALCGT+ICLRQV KA+Y AIA GVTH CAAPVVLNSIVNA
Sbjct: 241 WTLPMFHCNGWCFTWTLAALCGTNICLRQVATKAIYQAIANDGVTHLCAAPVVLNSIVNA 300
Query: 301 PSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWD 360
P +TILPLP VVHV TAGAAPPPSVL AMSQ+GF VTHTYGLSETYGPSTVCAWKPEWD
Sbjct: 301 PKSETILPLPRVVHVMTAGAAPPPSVLFAMSQQGFRVTHTYGLSETYGPSTVCAWKPEWD 360
Query: 361 SLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNP 420
LPPETQAR+ ARQGVR+IGLE LDV+ T +PVPADG TIGEIVM GN VMKGYLKNP
Sbjct: 361 ELPPETQARLNARQGVRYIGLEGLDVVSTTDMKPVPADGTTIGEIVMRGNTVMKGYLKNP 420
Query: 421 KANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLE 480
KANEETFANGW+H+GDLGVKHPD YI++KDRSKDIIISGGENISSVE+EN +YLHPAVLE
Sbjct: 421 KANEETFANGWFHSGDLGVKHPDGYIQLKDRSKDIIISGGENISSVEIENAVYLHPAVLE 480
Query: 481 ASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGPLP 540
ASVVAR D+RWGESPCAFVTLKP VD+S+E++LAEDIMKFCR+++PAYW+PKS+VFGPLP
Sbjct: 481 ASVVARPDDRWGESPCAFVTLKPGVDRSDERRLAEDIMKFCRSRLPAYWIPKSVVFGPLP 540
Query: 541 KTATGKIQKHVLRAKAKEMGPVRKSKL 567
KTATGKIQKH+LRA+AKEMG ++KSKL
Sbjct: 541 KTATGKIQKHLLRARAKEMGTLKKSKL 567
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356521803|ref|XP_003529540.1| PREDICTED: medium-chain-fatty-acid--CoA ligase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 984 bits (2543), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/563 (81%), Positives = 509/563 (90%), Gaps = 1/563 (0%)
Query: 5 KGIDDLPKNAANYMALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCK 64
+ IDDLPKNAANY ALTPLWFL+RAATVHPTR S++HGS RYTW QTY RCRR ASAL
Sbjct: 7 RDIDDLPKNAANYTALTPLWFLERAATVHPTRNSLIHGSRRYTWQQTYHRCRRFASALSN 66
Query: 65 RSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVD 124
SIGLG TVA+IAPNIPA+YEAHFG+PM+GAVLN VNIRLNA T+AFLLGH +A ++VD
Sbjct: 67 HSIGLGNTVAVIAPNIPALYEAHFGIPMSGAVLNPVNIRLNASTVAFLLGHCTAAAVIVD 126
Query: 125 QEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDP 184
QE+F LAEEALKI EK+ F PPLLIVI DE+CDPK LKYALG+GA+EYE FLQ+GDP
Sbjct: 127 QEFFSLAEEALKIWSEKAK-TFSPPLLIVISDENCDPKALKYALGKGAIEYEDFLQSGDP 185
Query: 185 QFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLP 244
++ WKPP+DEWQSIALGYTSGTTASPKGVVL HRGAYLMSLS ALIWGM EGAVYLWTLP
Sbjct: 186 EYAWKPPEDEWQSIALGYTSGTTASPKGVVLHHRGAYLMSLSGALIWGMTEGAVYLWTLP 245
Query: 245 MFHCNGWCYTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSED 304
MFHCNGWCYTW+LAALCGT+ICLRQVTAKAVY AIAKY VTHFCAAPVVLN+++NAP+ED
Sbjct: 246 MFHCNGWCYTWTLAALCGTNICLRQVTAKAVYGAIAKYKVTHFCAAPVVLNTLINAPAED 305
Query: 305 TILPLPHVVHVNTAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPP 364
TILPLPHVVHVNTAGAAPPPSVL MS++GF VTHTYGLSETYGPS CAWKPEW+SLPP
Sbjct: 306 TILPLPHVVHVNTAGAAPPPSVLSGMSERGFRVTHTYGLSETYGPSVYCAWKPEWESLPP 365
Query: 365 ETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANE 424
E QAR+ ARQGVR+IGLE L V++T+T +PVPADGKT+GEIVM GN VMKGYLKNPKANE
Sbjct: 366 ENQARLNARQGVRYIGLEGLAVVNTKTMEPVPADGKTVGEIVMRGNSVMKGYLKNPKANE 425
Query: 425 ETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVV 484
ETFANGW+H+GDL VKHPD YIEIKDRSKDIIISG ENISSVE+EN +Y HP++LEA+VV
Sbjct: 426 ETFANGWFHSGDLAVKHPDGYIEIKDRSKDIIISGAENISSVEIENTLYSHPSILEAAVV 485
Query: 485 ARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGPLPKTAT 544
ARADE+WGESPCAFVTLKP VDKSNEQ++ EDI+KF RAKMPAYWVPKS+VFG LPKTAT
Sbjct: 486 ARADEKWGESPCAFVTLKPGVDKSNEQRIIEDILKFSRAKMPAYWVPKSVVFGALPKTAT 545
Query: 545 GKIQKHVLRAKAKEMGPVRKSKL 567
GKIQKH+LRAKAKEMGPV+ SKL
Sbjct: 546 GKIQKHILRAKAKEMGPVKLSKL 568
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225431900|ref|XP_002276434.1| PREDICTED: medium-chain-fatty-acid--CoA ligase [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 984 bits (2543), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/567 (81%), Positives = 511/567 (90%)
Query: 1 MSMAKGIDDLPKNAANYMALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLAS 60
M + + IDDLPKNAANY ALTPLW L+RAA VHP R SV+HGS +YTWLQTYQRCRRLAS
Sbjct: 1 MVVERDIDDLPKNAANYTALTPLWLLERAAVVHPNRKSVIHGSLQYTWLQTYQRCRRLAS 60
Query: 61 ALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAV 120
AL K SIG G TVAIIAPNIPA YEAHFGVPM+GAV+N VNIRLNAPTIAFLL HS++AV
Sbjct: 61 ALSKYSIGAGSTVAIIAPNIPAKYEAHFGVPMSGAVVNCVNIRLNAPTIAFLLEHSSAAV 120
Query: 121 IMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQ 180
+MVDQE+F LAEEALKI +KS FKPPLLIVI DESCDPK L+YAL +G +EYE+FL+
Sbjct: 121 VMVDQEFFPLAEEALKIWSDKSKNDFKPPLLIVIADESCDPKALEYALRKGVIEYEQFLE 180
Query: 181 TGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYL 240
TGDP+F WKPPQDEWQSIALGYTSGTTASPKGVVL HRGAY+M+L+ AL+WGMNEGAVYL
Sbjct: 181 TGDPEFAWKPPQDEWQSIALGYTSGTTASPKGVVLHHRGAYIMALTGALVWGMNEGAVYL 240
Query: 241 WTLPMFHCNGWCYTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNA 300
WTLPMFHCNGWC+TW+LAALCGT+ICLRQV KA+Y AIA GVTH CAAPVVLNSIVNA
Sbjct: 241 WTLPMFHCNGWCFTWTLAALCGTNICLRQVETKAIYQAIANDGVTHLCAAPVVLNSIVNA 300
Query: 301 PSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWD 360
P +TILPLP VVHV TAGAAPPPSVL AMSQ+GF VTHTYGLSETYGPSTVCAWKPEWD
Sbjct: 301 PKSETILPLPRVVHVMTAGAAPPPSVLFAMSQQGFRVTHTYGLSETYGPSTVCAWKPEWD 360
Query: 361 SLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNP 420
LPPETQAR+ ARQGV++IGLE LDV+ T +PVPADG TIGEIVM GN VMKGYLKNP
Sbjct: 361 ELPPETQARLNARQGVQYIGLEGLDVVSTTDMKPVPADGTTIGEIVMRGNTVMKGYLKNP 420
Query: 421 KANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLE 480
KANEETFANGW+H+GDLGVKHPD YI++KDRSKDIIISGGENISSVEVEN +YLHPAVLE
Sbjct: 421 KANEETFANGWFHSGDLGVKHPDGYIQLKDRSKDIIISGGENISSVEVENAVYLHPAVLE 480
Query: 481 ASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGPLP 540
ASVVAR D+RWGESPCAFVTLKP VD+S+E++LAEDIMKFCR+K+PAYW+PKS+VFGPLP
Sbjct: 481 ASVVARPDDRWGESPCAFVTLKPGVDRSDERRLAEDIMKFCRSKLPAYWIPKSVVFGPLP 540
Query: 541 KTATGKIQKHVLRAKAKEMGPVRKSKL 567
KTATGKIQKH+LRA+ KEMGP++KSKL
Sbjct: 541 KTATGKIQKHLLRARTKEMGPLKKSKL 567
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147854579|emb|CAN82780.1| hypothetical protein VITISV_017128 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 983 bits (2541), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/567 (81%), Positives = 510/567 (89%)
Query: 1 MSMAKGIDDLPKNAANYMALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLAS 60
M + + IDDLPKNAANY ALTPLW L+RAA VHP R SV+HGS +YTWLQTYQRCRRLAS
Sbjct: 1 MVVERDIDDLPKNAANYTALTPLWLLERAAVVHPNRKSVIHGSLQYTWLQTYQRCRRLAS 60
Query: 61 ALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAV 120
AL K SIG G TVAIIAPNIPA+YEAHFGVPM+GAV+N VNIRLNAPTIAFLL HS++AV
Sbjct: 61 ALSKYSIGAGSTVAIIAPNIPAMYEAHFGVPMSGAVVNCVNIRLNAPTIAFLLEHSSAAV 120
Query: 121 IMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQ 180
+MVDQE+F LAEEALKI KS FKPPLLIVI DESCDPK L+YAL +G +EYE+FL+
Sbjct: 121 VMVDQEFFPLAEEALKIWSGKSKNDFKPPLLIVIADESCDPKGLEYALRKGVIEYEQFLE 180
Query: 181 TGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYL 240
TGDP+F WKPPQDEWQSIALGYTSGTTASPKGVVL HRGAY+M+L+ AL+WGMNEGAVYL
Sbjct: 181 TGDPEFAWKPPQDEWQSIALGYTSGTTASPKGVVLHHRGAYIMALTGALVWGMNEGAVYL 240
Query: 241 WTLPMFHCNGWCYTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNA 300
WTLPMFHCNGWC+TW+LAALCGT+ICLRQV KA+Y AIA GVTH CAAPVVLNSIVNA
Sbjct: 241 WTLPMFHCNGWCFTWTLAALCGTNICLRQVATKAIYQAIANDGVTHLCAAPVVLNSIVNA 300
Query: 301 PSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWD 360
P +TILPLP VVHV TAGAAPPPSVL AMSQ+GF VTHTYGLSETYGPSTVCAWKPEWD
Sbjct: 301 PKSETILPLPRVVHVMTAGAAPPPSVLFAMSQQGFRVTHTYGLSETYGPSTVCAWKPEWD 360
Query: 361 SLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNP 420
LPPETQAR+ ARQGV +IGLE LDV+ T +PVPADG TIGEIVM GN VMKGYLKNP
Sbjct: 361 ELPPETQARLNARQGVXYIGLEGLDVVSTTDMKPVPADGTTIGEIVMRGNTVMKGYLKNP 420
Query: 421 KANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLE 480
KANEETFANGW+H+GDLGVKHPD YI++KDRSKDIIISGGENISSVEVEN +YLHPAVLE
Sbjct: 421 KANEETFANGWFHSGDLGVKHPDGYIQLKDRSKDIIISGGENISSVEVENAVYLHPAVLE 480
Query: 481 ASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGPLP 540
ASVVAR D+RWGESPCAFVTLKP VD+S+E++LAEDIMKFCR+K+PAYW+PKS+VFGPLP
Sbjct: 481 ASVVARPDDRWGESPCAFVTLKPGVDRSDERRLAEDIMKFCRSKLPAYWIPKSVVFGPLP 540
Query: 541 KTATGKIQKHVLRAKAKEMGPVRKSKL 567
KTATGKIQKH+LRA+ KEMGP++KSKL
Sbjct: 541 KTATGKIQKHLLRARTKEMGPLKKSKL 567
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255556322|ref|XP_002519195.1| AMP dependent ligase, putative [Ricinus communis] gi|223541510|gb|EEF43059.1| AMP dependent ligase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 981 bits (2535), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/565 (81%), Positives = 513/565 (90%), Gaps = 1/565 (0%)
Query: 3 MAKGIDDLPKNAANYMALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASAL 62
+ K ID+LPKNAANY ALTPL FLDRAATVHP+R S+VHGST YTWLQTY+RCRRLASAL
Sbjct: 2 VVKDIDELPKNAANYTALTPLLFLDRAATVHPSRVSLVHGSTHYTWLQTYKRCRRLASAL 61
Query: 63 CKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIM 122
S+G G TVAIIAPN+PA+YEAHFGVPMAGAV+N VNIRLNA T+AFLLGHS S V+M
Sbjct: 62 TNHSVGFGSTVAIIAPNVPAMYEAHFGVPMAGAVVNCVNIRLNASTVAFLLGHSKSEVVM 121
Query: 123 VDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTG 182
VDQE+F LAEEAL+I+ KS FKP LLIVI D+SCDPK LK+ALGRGA+EYEKFL++G
Sbjct: 122 VDQEFFSLAEEALEILA-KSESSFKPALLIVIADKSCDPKSLKHALGRGAIEYEKFLESG 180
Query: 183 DPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWT 242
DP+F WK P+DEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLS LIWGMNEGAVYLWT
Sbjct: 181 DPEFAWKQPEDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSNPLIWGMNEGAVYLWT 240
Query: 243 LPMFHCNGWCYTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPS 302
LPMFHCNGWC+TWSLAALCGT+ICLRQVTAKAVYSAIA GV+HFC APVVLN+IVNAP
Sbjct: 241 LPMFHCNGWCFTWSLAALCGTNICLRQVTAKAVYSAIANNGVSHFCGAPVVLNTIVNAPK 300
Query: 303 EDTILPLPHVVHVNTAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSL 362
E+TILPLP +VHV TAGAAPPPSVL AMS+KGF VTHTYGLSETYGPSTVCAWKPEWDS
Sbjct: 301 EETILPLPRIVHVMTAGAAPPPSVLFAMSEKGFRVTHTYGLSETYGPSTVCAWKPEWDSQ 360
Query: 363 PPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKA 422
PP QAR+ ARQGVR+IGLE LDV+D +T +PVPADGKTIGEIVM GN+VMKGYLKNPKA
Sbjct: 361 PPIVQARLNARQGVRYIGLEGLDVVDPKTMKPVPADGKTIGEIVMRGNIVMKGYLKNPKA 420
Query: 423 NEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEAS 482
NEE FANGW+H+GDL VKHPDNY+EIKDRSKDIIISGGENISS+EVEN++Y HPAV EAS
Sbjct: 421 NEEAFANGWFHSGDLAVKHPDNYMEIKDRSKDIIISGGENISSLEVENILYTHPAVYEAS 480
Query: 483 VVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGPLPKT 542
VVAR DE+WGESPCAFVTLKP V++S+E+ LAE+++KF R+KMPAYWVPKS+VFGPLPKT
Sbjct: 481 VVARPDEQWGESPCAFVTLKPGVNRSDERYLAEELIKFSRSKMPAYWVPKSVVFGPLPKT 540
Query: 543 ATGKIQKHVLRAKAKEMGPVRKSKL 567
ATGKIQKHVLRA+AKEMGPV+KSKL
Sbjct: 541 ATGKIQKHVLRARAKEMGPVKKSKL 565
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|380042372|gb|AFD33350.1| acyl-activating enzyme 6 [Cannabis sativa] | Back alignment and taxonomy information |
|---|
Score = 980 bits (2533), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 455/563 (80%), Positives = 508/563 (90%)
Query: 5 KGIDDLPKNAANYMALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCK 64
+ IDDLPKNAANY ALTPLWFL+RAAT+HPTR SVVHGS RYTWLQTY+RCR+ ASAL
Sbjct: 7 RDIDDLPKNAANYTALTPLWFLERAATIHPTRDSVVHGSRRYTWLQTYRRCRQFASALTT 66
Query: 65 RSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVD 124
SI LG TVA+IAPNI A+YEAHFGVPMAGAVLNAVNIRLNA TI FLLGHS +A ++VD
Sbjct: 67 HSIALGSTVAVIAPNIHALYEAHFGVPMAGAVLNAVNIRLNASTIGFLLGHSLAAAVIVD 126
Query: 125 QEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDP 184
QE+F LAEEALKI+ E+ +KPPLL+VIGDESCDPK+L+YAL RGA+EYEKFL+ GDP
Sbjct: 127 QEFFPLAEEALKILAEERKSHYKPPLLVVIGDESCDPKNLEYALKRGAIEYEKFLEGGDP 186
Query: 185 QFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLP 244
+F W+PP+DEWQSIALGYTSGTTASPKGVVLSHRG+YLMSLS A++WGMNEGA+YLWTLP
Sbjct: 187 EFSWEPPEDEWQSIALGYTSGTTASPKGVVLSHRGSYLMSLSAAVVWGMNEGAIYLWTLP 246
Query: 245 MFHCNGWCYTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSED 304
MFHCNGWCYTW +AA+CGT+ICLRQVTAK VYSAIA+YGVTHFCAAPVVLN+IVNAP+ED
Sbjct: 247 MFHCNGWCYTWGMAAMCGTNICLRQVTAKGVYSAIAEYGVTHFCAAPVVLNTIVNAPAED 306
Query: 305 TILPLPHVVHVNTAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPP 364
ILPLPH+VHV TAGAAPPPSVL AMS+KGF V HTYGLSETYGPST+CAWKPEWDSLPP
Sbjct: 307 AILPLPHLVHVMTAGAAPPPSVLFAMSEKGFKVAHTYGLSETYGPSTICAWKPEWDSLPP 366
Query: 365 ETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANE 424
QAR+ ARQGVR+I LE LDV+DT+T + VPADG T+GEIVM GN VMKGYLKNPKAN+
Sbjct: 367 IKQARLNARQGVRYIALEGLDVVDTKTMKSVPADGTTMGEIVMRGNAVMKGYLKNPKANK 426
Query: 425 ETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVV 484
E+FANGW+H+GDL VKHPD YIEIKDRSKDIIISGGENISS+EVEN +YL PAVLE VV
Sbjct: 427 ESFANGWFHSGDLAVKHPDGYIEIKDRSKDIIISGGENISSLEVENPLYLPPAVLEVFVV 486
Query: 485 ARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGPLPKTAT 544
AR DERWGESPCAFVTLKP +D SNEQ LAEDI+KFCR+K PAYWVPKS+VFGPLPKTAT
Sbjct: 487 ARPDERWGESPCAFVTLKPNIDNSNEQGLAEDIIKFCRSKKPAYWVPKSVVFGPLPKTAT 546
Query: 545 GKIQKHVLRAKAKEMGPVRKSKL 567
GKIQKHVLR KAKEMG ++KSKL
Sbjct: 547 GKIQKHVLRTKAKEMGALKKSKL 569
|
Source: Cannabis sativa Species: Cannabis sativa Genus: Cannabis Family: Cannabaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357478905|ref|XP_003609738.1| 2-succinylbenzoate-CoA ligase [Medicago truncatula] gi|355510793|gb|AES91935.1| 2-succinylbenzoate-CoA ligase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 979 bits (2532), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 454/567 (80%), Positives = 510/567 (89%), Gaps = 1/567 (0%)
Query: 1 MSMAKGIDDLPKNAANYMALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLAS 60
M + IDDLPKNAANY +LTPLWFL+RAA VHPTR S++HGS YTW QTYQRCRR AS
Sbjct: 1 MGTKQDIDDLPKNAANYTSLTPLWFLERAAQVHPTRKSIIHGSRHYTWRQTYQRCRRFAS 60
Query: 61 ALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAV 120
AL RSI LG TVA+IAPNIPA+YEAHFG+PMAGAV+N VNIRLNA TIAFLLGH ++V
Sbjct: 61 ALSNRSIALGNTVAVIAPNIPALYEAHFGIPMAGAVINPVNIRLNASTIAFLLGHCTASV 120
Query: 121 IMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQ 180
++VDQE+F LAEEALKI +K+ FK P+LIVIGDE+CDPK L+YAL +GAVEYE FL+
Sbjct: 121 VIVDQEFFSLAEEALKIWSDKTK-TFKSPILIVIGDENCDPKSLRYALSKGAVEYEDFLR 179
Query: 181 TGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYL 240
+GDP+++WKPP+DEWQSIALGYTSGTTASPKGVVL HRGAYLMSLS ALIWGMNEGAVYL
Sbjct: 180 SGDPEYNWKPPEDEWQSIALGYTSGTTASPKGVVLHHRGAYLMSLSGALIWGMNEGAVYL 239
Query: 241 WTLPMFHCNGWCYTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNA 300
WTLPMFHCNGWCYTW+LAAL GT+ICLRQV+AKAVY AI KY VTHFCAAPVVLNSI+NA
Sbjct: 240 WTLPMFHCNGWCYTWTLAALFGTNICLRQVSAKAVYEAIVKYKVTHFCAAPVVLNSIINA 299
Query: 301 PSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWD 360
P+E+TILPLPHVVHVNTAGAAPPPSVL MS++GF VTHTYGLSETYGPS CAWKPEWD
Sbjct: 300 PAEETILPLPHVVHVNTAGAAPPPSVLSGMSERGFRVTHTYGLSETYGPSVYCAWKPEWD 359
Query: 361 SLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNP 420
SLPPE++AR+ ARQGV++I LE LDV++T+T QPVPADGKT+GEIVM GN VMKGYLKNP
Sbjct: 360 SLPPESRARLHARQGVKYIALEGLDVVNTKTMQPVPADGKTVGEIVMRGNAVMKGYLKNP 419
Query: 421 KANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLE 480
KANEE+FANGWYH+GDL VKHPD YIEIKDRSKDIIISG ENISSVEVEN +Y HPA+LE
Sbjct: 420 KANEESFANGWYHSGDLAVKHPDGYIEIKDRSKDIIISGAENISSVEVENALYSHPAILE 479
Query: 481 ASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGPLP 540
SVVAR DE+WGESPCAFVTLKP VD+SNEQ+L EDI+KFCRAKMP YWVPKS+VFGPLP
Sbjct: 480 TSVVARPDEKWGESPCAFVTLKPGVDRSNEQRLVEDILKFCRAKMPTYWVPKSVVFGPLP 539
Query: 541 KTATGKIQKHVLRAKAKEMGPVRKSKL 567
KTATGK+QKH+LRAKAKEMGP++ SKL
Sbjct: 540 KTATGKVQKHLLRAKAKEMGPLKTSKL 566
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356564634|ref|XP_003550556.1| PREDICTED: medium-chain-fatty-acid--CoA ligase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 978 bits (2529), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 456/563 (80%), Positives = 508/563 (90%), Gaps = 1/563 (0%)
Query: 5 KGIDDLPKNAANYMALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCK 64
+ ID LPKNAANY ALTPLWFL+RAATVHPTR S++HGS YTW QTY RCRR ASAL
Sbjct: 8 RDIDHLPKNAANYTALTPLWFLERAATVHPTRNSLIHGSRHYTWQQTYHRCRRFASALSN 67
Query: 65 RSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVD 124
SIGLG TVA+IAPNIPA+YEAHFG+PMAGAVLN +NIRLNA TIAFLLGH +A ++VD
Sbjct: 68 HSIGLGNTVAVIAPNIPAVYEAHFGIPMAGAVLNPLNIRLNASTIAFLLGHCTAAAVIVD 127
Query: 125 QEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDP 184
QE+F LAEEALKI EK+ F PPLLIVIGDE+CDPK LKYALG+GAV+YE FLQ+GDP
Sbjct: 128 QEFFSLAEEALKIWSEKAK-TFSPPLLIVIGDENCDPKALKYALGKGAVDYEDFLQSGDP 186
Query: 185 QFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLP 244
++ WKPP+DEWQSI+LGYTSGTTASPKGVVL HRGAYLMSLS ALIWGM EGAVYLWTLP
Sbjct: 187 EYAWKPPEDEWQSISLGYTSGTTASPKGVVLHHRGAYLMSLSGALIWGMTEGAVYLWTLP 246
Query: 245 MFHCNGWCYTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSED 304
MFHCNGWCYTW+LAALCGT+ICLRQVT KAVY AIAKY V+HFCAAPVVLN+IVNAP+ED
Sbjct: 247 MFHCNGWCYTWTLAALCGTNICLRQVTPKAVYEAIAKYKVSHFCAAPVVLNTIVNAPAED 306
Query: 305 TILPLPHVVHVNTAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPP 364
TILPLPHVVHVNTAGAAPPPSVL MS++GF VTHTYGLSETYGPS CAWKPEW+SLPP
Sbjct: 307 TILPLPHVVHVNTAGAAPPPSVLSGMSERGFRVTHTYGLSETYGPSVYCAWKPEWESLPP 366
Query: 365 ETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANE 424
E +AR+ ARQGVR++GLE LDV++T+T +PVPADGKT+GEIVM GN VMKGYLKNPKANE
Sbjct: 367 ENRARLNARQGVRYVGLEGLDVVNTKTMEPVPADGKTVGEIVMRGNSVMKGYLKNPKANE 426
Query: 425 ETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVV 484
ETFANGW+H+GDL VKHPD YIEIKDRSKDIIISG ENISSVE+EN +Y HPA+LEA+VV
Sbjct: 427 ETFANGWFHSGDLAVKHPDGYIEIKDRSKDIIISGAENISSVEIENTLYSHPAILEAAVV 486
Query: 485 ARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGPLPKTAT 544
ARADE+WGESPCAFVTLKP VDKSN Q++ EDI+KFC+AKMPAYWVPKS+VFG LPKTAT
Sbjct: 487 ARADEKWGESPCAFVTLKPGVDKSNGQRIIEDILKFCKAKMPAYWVPKSVVFGALPKTAT 546
Query: 545 GKIQKHVLRAKAKEMGPVRKSKL 567
GKIQKH+LRAKAKEMGPV+ SKL
Sbjct: 547 GKIQKHILRAKAKEMGPVKLSKL 569
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 567 | ||||||
| TAIR|locus:2086122 | 569 | AAE7 "acyl-activating enzyme 7 | 0.992 | 0.989 | 0.788 | 2.7e-251 | |
| TIGR_CMR|SPO_0677 | 542 | SPO_0677 "AMP-binding protein" | 0.934 | 0.977 | 0.559 | 2.1e-164 | |
| TAIR|locus:2030407 | 556 | AAE1 "acyl activating enzyme 1 | 0.955 | 0.974 | 0.534 | 3.8e-156 | |
| UNIPROTKB|Q47WB3 | 541 | CPS_4259 "AMP-binding protein" | 0.936 | 0.981 | 0.526 | 1.9e-154 | |
| TIGR_CMR|CPS_4259 | 541 | CPS_4259 "AMP-binding protein" | 0.936 | 0.981 | 0.526 | 1.9e-154 | |
| TAIR|locus:2057249 | 603 | AT2G17650 [Arabidopsis thalian | 0.968 | 0.910 | 0.502 | 7.1e-148 | |
| TAIR|locus:2171357 | 550 | AT5G16340 [Arabidopsis thalian | 0.955 | 0.985 | 0.484 | 3.5e-139 | |
| TAIR|locus:2171402 | 552 | AAE5 "acyl activating enzyme 5 | 0.955 | 0.981 | 0.481 | 3.5e-139 | |
| TAIR|locus:2009774 | 580 | BZO1 "benzoyloxyglucosinolate | 0.957 | 0.936 | 0.475 | 6.7e-136 | |
| TAIR|locus:2027012 | 549 | AT1G21530 [Arabidopsis thalian | 0.948 | 0.979 | 0.467 | 8.5e-136 |
| TAIR|locus:2086122 AAE7 "acyl-activating enzyme 7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2420 (856.9 bits), Expect = 2.7e-251, P = 2.7e-251
Identities = 444/563 (78%), Positives = 495/563 (87%)
Query: 5 KGIDDLPKNAANYMALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCK 64
+ IDDLPK ANY ALTPLWFLDRAA VHPTR SV+HGS YTW QTY RCRRLASAL
Sbjct: 7 RDIDDLPKIPANYTALTPLWFLDRAAVVHPTRKSVIHGSREYTWRQTYDRCRRLASALAD 66
Query: 65 RSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVD 124
RSIG G TVAIIAPNIPA+YEAHFGVPM GAVLN VNIRLNAPT+AFLL HS S+VIMVD
Sbjct: 67 RSIGPGSTVAIIAPNIPAMYEAHFGVPMCGAVLNCVNIRLNAPTVAFLLSHSQSSVIMVD 126
Query: 125 QEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDP 184
QE+F LAE++L++MEEK+ FK PLLIVIGD +C P+ L AL +GA+EYE FL TGDP
Sbjct: 127 QEFFTLAEDSLRLMEEKAGSSFKRPLLIVIGDHTCAPESLNRALSKGAIEYEDFLATGDP 186
Query: 185 QFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLP 244
+ W+PP DEWQSIALGYTSGTTASPKGVVL HRGAY+M+LS LIWGM +GAVYLWTLP
Sbjct: 187 NYPWQPPADEWQSIALGYTSGTTASPKGVVLHHRGAYIMALSNPLIWGMQDGAVYLWTLP 246
Query: 245 MFHCNGWCYTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSED 304
MFHCNGWC+ WSLA L GTSICLRQVTAK VYS IAKY VTHFCAAPVVLN+IVNAP ED
Sbjct: 247 MFHCNGWCFPWSLAVLSGTSICLRQVTAKEVYSMIAKYKVTHFCAAPVVLNAIVNAPKED 306
Query: 305 TILPLPHVVHVNTAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPP 364
TILPLPH VHV TAGAAPPPSVL +M+QKGF V HTYGLSETYGPSTVCAWKPEWDSLPP
Sbjct: 307 TILPLPHTVHVMTAGAAPPPSVLFSMNQKGFRVAHTYGLSETYGPSTVCAWKPEWDSLPP 366
Query: 365 ETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANE 424
ETQA++ ARQGVR+ G+E+LDVIDT+T +PVPADGKT GEIV GN+VMKGYLKNP+AN+
Sbjct: 367 ETQAKLNARQGVRYTGMEQLDVIDTQTGKPVPADGKTAGEIVFRGNMVMKGYLKNPEANK 426
Query: 425 ETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVV 484
ETFA GW+H+GD+ VKHPDNYIEIKDRSKD+IISGGENISSVEVEN++Y HPAVLEASVV
Sbjct: 427 ETFAGGWFHSGDIAVKHPDNYIEIKDRSKDVIISGGENISSVEVENVVYHHPAVLEASVV 486
Query: 485 ARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGPLPKTAT 544
AR DERW ESPCAFVTLK + +K ++ +LA+DIMKFCR K+PAYWVPKS+VFGPLPKTAT
Sbjct: 487 ARPDERWQESPCAFVTLKSDYEKHDQNKLAQDIMKFCREKLPAYWVPKSVVFGPLPKTAT 546
Query: 545 GKIQKHVLRAKAKEMGPVRKSKL 567
GKIQKH+LR KAKEMGPV +S+L
Sbjct: 547 GKIQKHILRTKAKEMGPVPRSRL 569
|
|
| TIGR_CMR|SPO_0677 SPO_0677 "AMP-binding protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 1600 (568.3 bits), Expect = 2.1e-164, P = 2.1e-164
Identities = 309/552 (55%), Positives = 388/552 (70%)
Query: 10 LPKNAANYMALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGL 69
L + AN+ L+PL +++R A V+P SVV+G RYTW +TY RCRRLASAL R +G
Sbjct: 11 LDRTPANFTPLSPLSYIERTAAVYPDYPSVVYGDRRYTWAETYTRCRRLASALAGRGLGK 70
Query: 70 GCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFK 129
G TV+IIA NIP +YEAHFGVPMAGAVLNA+N RL+AP IAF+L H+ + V++VD E+ +
Sbjct: 71 GDTVSIIAANIPEMYEAHFGVPMAGAVLNAINTRLDAPIIAFILSHAEARVLIVDPEFSE 130
Query: 130 LAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGR--GAVEYEKFLQTGDPQFD 187
+ +AL ++ +P LL+V D +D +A G G + Y+ L GDP FD
Sbjct: 131 VVRDALAQID-------RPDLLVV------DIEDPSFAGGAPVGTLSYDALLAEGDPDFD 177
Query: 188 WKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFH 247
W P DEW +IAL YTSGTT +PKGVV HRGA L + S L WGM + AVYLWTLPMFH
Sbjct: 178 WSLPGDEWDAIALNYTSGTTGNPKGVVYHHRGAALNATSNILTWGMPQHAVYLWTLPMFH 237
Query: 248 CNGWCYTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTIL 307
CNGWC+ W++AA G S+CLR V + +Y A + VTHFC AP+VLN + NAP D +
Sbjct: 238 CNGWCFPWTMAANAGVSVCLRAVRDEPIYRAFREEKVTHFCGAPIVLNMLANAP--DHMK 295
Query: 308 PLPHVVHVNTAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQ 367
H + V TAGA PP +V+ M G VTH YGL+ETYGPS VCAWK EWD P +
Sbjct: 296 DFDHQIKVMTAGAPPPAAVIEKMEAMGVDVTHVYGLTETYGPSVVCAWKEEWDGRPGAER 355
Query: 368 ARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETF 427
A +K RQGVR++ L L V D T +PVPADG+T+GEI M GN+VMKGYLKNP A + F
Sbjct: 356 AALKVRQGVRYVALSGLMVADPETLEPVPADGETMGEIFMQGNIVMKGYLKNPDATDRAF 415
Query: 428 ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARA 487
GW+ +GDLGV HPD YI +KDRSKDIIISGGENISSVEVE+++Y HPAV+EA+VVAR
Sbjct: 416 RGGWFASGDLGVMHPDGYIALKDRSKDIIISGGENISSVEVEDVLYKHPAVMEAAVVARP 475
Query: 488 DERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGPLPKTATGKI 547
DE+WGE+PCAFV LKP +S E A D++ CRA M + PK++VFG LPKT+TGKI
Sbjct: 476 DEKWGETPCAFVELKP--GQSVE---AADLIAHCRANMAHFKAPKTVVFGELPKTSTGKI 530
Query: 548 QKHVLRAKAKEM 559
QK +LR +A+ +
Sbjct: 531 QKFLLRERARAL 542
|
|
| TAIR|locus:2030407 AAE1 "acyl activating enzyme 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1522 (540.8 bits), Expect = 3.8e-156, P = 3.8e-156
Identities = 296/554 (53%), Positives = 386/554 (69%)
Query: 12 KNAANYMALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGC 71
K+ ANY+ LTP+ FLDR+A V+ R S+V+GS +YTW QT RC R+ASAL + I G
Sbjct: 8 KSPANYVPLTPISFLDRSAVVYADRVSIVYGSVKYTWRQTRDRCVRIASALSQLGISTGD 67
Query: 72 TVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLA 131
V+++APN+PA+ E HFGVPMAGA+L +NIR ++ +A LL HS + VI D ++ ++A
Sbjct: 68 VVSVLAPNVPAMVELHFGVPMAGALLCTLNIRHDSSLVAVLLRHSGTKVIFADHQFLQIA 127
Query: 132 EEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPP 191
E A +I+ K + K P+L++I + K +EYE + G F+ P
Sbjct: 128 EGACEILSNKGD---KVPILVLIPEPLTQSVSRKKR-SEEMMEYEDVVAMGKSDFEVIRP 183
Query: 192 QDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGW 251
DE +I++ YTSGTT+SPKGVV SHRGAYL SL+ L+ M+ YLWT PMFHCNGW
Sbjct: 184 TDECDAISVNYTSGTTSSPKGVVYSHRGAYLNSLAAVLLNEMHSSPTYLWTNPMFHCNGW 243
Query: 252 CYTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPH 311
C W + A+ GT+ICLR VTAKA++ I+++ VTH AP +LN I+NAP + PLP
Sbjct: 244 CLLWGVTAIGGTNICLRNVTAKAIFDNISQHKVTHMGGAPTILNMIINAPESEQ-KPLPG 302
Query: 312 VVHVNTAGAAPPPS-VLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARM 370
V T GAAPPP+ V+ M + GF + H+YGL+ETYGP T+C WKPEWDSLP E QA+M
Sbjct: 303 KVSFIT-GAAPPPAHVIFKMEELGFSMFHSYGLTETYGPGTICTWKPEWDSLPREEQAKM 361
Query: 371 KARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANG 430
KARQGV +GLE++ V D T + +PADG T+GE+V GN VM GYLKNP+A +E F G
Sbjct: 362 KARQGVNHLGLEEIQVKDPVTMRTLPADGVTMGEVVFRGNTVMNGYLKNPEATKEAFKGG 421
Query: 431 WYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADER 490
W+ +GDLGVKHPD YIE+KDRSKDIIISGGENISS+EVE+ ++ HP VLEA+VVAR DE
Sbjct: 422 WFWSGDLGVKHPDGYIELKDRSKDIIISGGENISSIEVESTLFTHPCVLEAAVVARPDEY 481
Query: 491 WGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGPLPKTATGKIQKH 550
WGE+ CAFV LK D S AE+++ +CR ++P Y P+SIVF LPKT+TGK+QK
Sbjct: 482 WGETACAFVKLK---DGSKAS--AEELISYCRDRLPHYMAPRSIVFEDLPKTSTGKVQKF 536
Query: 551 VLRAKAKEMGPVRK 564
VLR KAK + + K
Sbjct: 537 VLRTKAKALVSLSK 550
|
|
| UNIPROTKB|Q47WB3 CPS_4259 "AMP-binding protein" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 1506 (535.2 bits), Expect = 1.9e-154, P = 1.9e-154
Identities = 289/549 (52%), Positives = 384/549 (69%)
Query: 10 LPKNAANYMALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGL 69
L N ANYMALTP+ FL+RAA V+P +T+ V+G R+TWL+ +QRC R ASAL KR IG
Sbjct: 11 LEPNEANYMALTPISFLERAAFVYPDKTATVNGDIRHTWLEVFQRCSRFASALAKRGIGR 70
Query: 70 GCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFK 129
G TV++IAPNI +E HFGVPM+GAVLN++N RL+A IAF+L H+ + V++ D+E+
Sbjct: 71 GDTVSVIAPNISEHFEVHFGVPMSGAVLNSINTRLDAEAIAFILVHAETKVLITDKEFSP 130
Query: 130 LAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWK 189
+ ++AL+++ K PL+I I D + + L G++ Y++ L+ GD F+
Sbjct: 131 IVKKALRMIPHK-------PLVIDIDDPNFNEGQLI-----GSLTYDQLLEEGDSDFESI 178
Query: 190 PPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCN 249
P++EW +I+L YTSGTT PKGVV +RGAYL ++S + W M E VYLWTLPMFHCN
Sbjct: 179 RPKNEWDAISLNYTSGTTGDPKGVVYHYRGAYLNAVSNVMSWSMGEHPVYLWTLPMFHCN 238
Query: 250 GWCYTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPL 309
GWC+ WS+AA GTS+ LR V A+ +++ I V +FC AP+VLN ++N +
Sbjct: 239 GWCFPWSIAATAGTSVSLRHVRAEPIFNLIRSEKVGYFCGAPIVLN-MLNGAEPSLKADI 297
Query: 310 PHVVHVNTAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQAR 369
H V V TAGA PP SV+ M GF VTHTYGL+ETYGPS VCAW EW+ PE QA+
Sbjct: 298 NHPVKVMTAGAPPPASVIEGMEASGFKVTHTYGLTETYGPSVVCAWHDEWNEESPEKQAK 357
Query: 370 MKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFAN 429
+K+RQGVR L++L V D T +P+P DG+++GEI M GN+VMKGYLKNP + F
Sbjct: 358 LKSRQGVRSPMLDQLMVADPETLEPMPKDGESVGEIFMRGNLVMKGYLKNPSTTQAAFDG 417
Query: 430 GWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADE 489
GW H+GD+ V H D YIEIKDRSKD+IISGGENISSVEVE+++Y HP V E +VVA+ D+
Sbjct: 418 GWLHSGDIAVWHSDGYIEIKDRSKDVIISGGENISSVEVEDILYRHPKVQEVAVVAKKDD 477
Query: 490 RWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGPLPKTATGKIQK 549
+WGE+PCAF+T P V+ + EQ++ + FCR M + PK+I+FG LPKT+TGKIQK
Sbjct: 478 KWGETPCAFITPMPNVEIT-EQEM----ISFCRDNMAHFKAPKTIIFGELPKTSTGKIQK 532
Query: 550 HVLRAKAKE 558
VLR +A E
Sbjct: 533 FVLRQQANE 541
|
|
| TIGR_CMR|CPS_4259 CPS_4259 "AMP-binding protein" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 1506 (535.2 bits), Expect = 1.9e-154, P = 1.9e-154
Identities = 289/549 (52%), Positives = 384/549 (69%)
Query: 10 LPKNAANYMALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGL 69
L N ANYMALTP+ FL+RAA V+P +T+ V+G R+TWL+ +QRC R ASAL KR IG
Sbjct: 11 LEPNEANYMALTPISFLERAAFVYPDKTATVNGDIRHTWLEVFQRCSRFASALAKRGIGR 70
Query: 70 GCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFK 129
G TV++IAPNI +E HFGVPM+GAVLN++N RL+A IAF+L H+ + V++ D+E+
Sbjct: 71 GDTVSVIAPNISEHFEVHFGVPMSGAVLNSINTRLDAEAIAFILVHAETKVLITDKEFSP 130
Query: 130 LAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWK 189
+ ++AL+++ K PL+I I D + + L G++ Y++ L+ GD F+
Sbjct: 131 IVKKALRMIPHK-------PLVIDIDDPNFNEGQLI-----GSLTYDQLLEEGDSDFESI 178
Query: 190 PPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCN 249
P++EW +I+L YTSGTT PKGVV +RGAYL ++S + W M E VYLWTLPMFHCN
Sbjct: 179 RPKNEWDAISLNYTSGTTGDPKGVVYHYRGAYLNAVSNVMSWSMGEHPVYLWTLPMFHCN 238
Query: 250 GWCYTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPL 309
GWC+ WS+AA GTS+ LR V A+ +++ I V +FC AP+VLN ++N +
Sbjct: 239 GWCFPWSIAATAGTSVSLRHVRAEPIFNLIRSEKVGYFCGAPIVLN-MLNGAEPSLKADI 297
Query: 310 PHVVHVNTAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQAR 369
H V V TAGA PP SV+ M GF VTHTYGL+ETYGPS VCAW EW+ PE QA+
Sbjct: 298 NHPVKVMTAGAPPPASVIEGMEASGFKVTHTYGLTETYGPSVVCAWHDEWNEESPEKQAK 357
Query: 370 MKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFAN 429
+K+RQGVR L++L V D T +P+P DG+++GEI M GN+VMKGYLKNP + F
Sbjct: 358 LKSRQGVRSPMLDQLMVADPETLEPMPKDGESVGEIFMRGNLVMKGYLKNPSTTQAAFDG 417
Query: 430 GWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADE 489
GW H+GD+ V H D YIEIKDRSKD+IISGGENISSVEVE+++Y HP V E +VVA+ D+
Sbjct: 418 GWLHSGDIAVWHSDGYIEIKDRSKDVIISGGENISSVEVEDILYRHPKVQEVAVVAKKDD 477
Query: 490 RWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGPLPKTATGKIQK 549
+WGE+PCAF+T P V+ + EQ++ + FCR M + PK+I+FG LPKT+TGKIQK
Sbjct: 478 KWGETPCAFITPMPNVEIT-EQEM----ISFCRDNMAHFKAPKTIIFGELPKTSTGKIQK 532
Query: 550 HVLRAKAKE 558
VLR +A E
Sbjct: 533 FVLRQQANE 541
|
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| TAIR|locus:2057249 AT2G17650 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1444 (513.4 bits), Expect = 7.1e-148, P = 7.1e-148
Identities = 281/559 (50%), Positives = 374/559 (66%)
Query: 7 IDDLPKNAANYMALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRS 66
I+ L ++ AN+ L+P+ FL+R+A V+ RTS+V GS ++TW QTYQRC RLASAL
Sbjct: 48 IEGLLRSPANFSPLSPITFLERSAKVYRDRTSLVFGSVKHTWFQTYQRCLRLASALTNLG 107
Query: 67 IGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQE 126
I G VA +APN+PA++E HF VPMAG +L +N RL+ T++ LL HS + ++ VD +
Sbjct: 108 ISRGDVVAALAPNVPAMHELHFAVPMAGLILCPLNTRLDPSTLSVLLAHSEAKILFVDHQ 167
Query: 127 YFKLAEEALKIMEEKSNGRFKPPLLIVI----GDESCDPKDLKYALGRGA-VEYEKFLQT 181
++A AL ++ + R L+++ D+S + +A EYE L++
Sbjct: 168 LLEIAHGALDLLAKSDKTRKSLKLVLISQSNDDDDSDEDSSSTFASKYSFDYEYETLLKS 227
Query: 182 GDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLW 241
GD +F+ P+ EW I++ YTSGTT+ PKGVV SHRGAYL SL+ + M+ VYLW
Sbjct: 228 GDSEFEIIKPRCEWDPISINYTSGTTSRPKGVVYSHRGAYLNSLATVFLHQMSVYPVYLW 287
Query: 242 TLPMFHCNGWCYTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAP 301
T+PMFHCNGWC W +AA GT+ICLR+V+ K ++ IA + VTH AP VLN IVN
Sbjct: 288 TVPMFHCNGWCLVWGVAAQGGTNICLRKVSPKMIFKNIAMHKVTHMGGAPTVLNMIVNYT 347
Query: 302 SEDTILPLPHVVHVNTAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDS 361
+ PLPH V + T G+ P P +L M + GF+V+H YGL+ETYGP T C WKPEWDS
Sbjct: 348 VTEH-KPLPHRVEIMTGGSPPLPQILAKMEELGFNVSHLYGLTETYGPGTHCVWKPEWDS 406
Query: 362 LPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPK 421
L E + ++KARQGV+ +GLE LDV D T + VP DG T+GE++ GN VM GY K+ +
Sbjct: 407 LSLEERTKLKARQGVQHLGLEGLDVKDPLTMETVPDDGLTMGEVMFRGNTVMSGYFKDIE 466
Query: 422 ANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEA 481
A + F W+H+GDL VK+PD YIEIKDR KD+IISGGENISSVEVE ++ H AVLEA
Sbjct: 467 ATRKAFEGDWFHSGDLAVKYPDGYIEIKDRLKDVIISGGENISSVEVERVLCSHQAVLEA 526
Query: 482 SVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGPLPK 541
+VVAR D WG++PC FV LK D E+I+ FCR +P Y PK+IVFG +PK
Sbjct: 527 AVVARPDHHWGQTPCGFVKLKEGFDTIKP----EEIIGFCRDHLPHYMAPKTIVFGDIPK 582
Query: 542 TATGKIQKHVLRAKAKEMG 560
T+TGK+QK++LR KA EMG
Sbjct: 583 TSTGKVQKYLLRKKADEMG 601
|
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| TAIR|locus:2171357 AT5G16340 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1362 (484.5 bits), Expect = 3.5e-139, P = 3.5e-139
Identities = 270/557 (48%), Positives = 373/557 (66%)
Query: 7 IDDLPKNAANYMALTPLWFLDRAATVHPTRTSVVHGS-TRYTWLQTYQRCRRLASALCKR 65
++++ AAN LTP+ FL+RAATV+ TS+V+GS T YTW +T RC R+AS+L
Sbjct: 1 MEEMKPCAANSPPLTPIGFLERAATVYGDCTSIVYGSNTVYTWRETNLRCLRVASSLSSI 60
Query: 66 SIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQ 125
IG V++++PN PA+YE F VPM+GA+LN +N RL+A T++ LL H S ++ VD
Sbjct: 61 GIGRSDVVSVLSPNTPAMYELQFAVPMSGAILNNINTRLDARTVSVLLRHCESKLLFVDV 120
Query: 126 EYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYA-LGRGAVEYEKFLQTGDP 184
LA EA+ +M PP+L+VI D+ + A L + + Y+ ++ GDP
Sbjct: 121 FSVDLAVEAVSMMTTD------PPILVVIADKEEEGGVADVADLSKFSYTYDDLIERGDP 174
Query: 185 QFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLP 244
F W P+ EW + L YTSGTT++PKGVV HRG ++MS+ + W + + VYLWTLP
Sbjct: 175 GFKWIRPESEWDPVVLNYTSGTTSAPKGVVHCHRGIFVMSVDSLIDWAVPKNPVYLWTLP 234
Query: 245 MFHCNGWCYTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSED 304
+FH NGW W +AA+ GT++CLR+ A +Y I +GVTH C APVVLN +++A E
Sbjct: 235 IFHSNGWTNPWGIAAVGGTNVCLRKFDAPLIYRLIRDHGVTHMCGAPVVLN-MLSATQES 293
Query: 305 TILPLPHVVHVNTAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPP 364
PL H V++ TAG+ PP +VL GF ++H YGL+ET G CAWKP+W+ LP
Sbjct: 294 Q--PLNHPVNILTAGSPPPATVLLRAESIGFVISHGYGLTETAGVIVSCAWKPKWNHLPA 351
Query: 365 ETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANE 424
+AR+KARQGVR +G ++DV+D + V +G+T+GEIVM G+ VM GYLK+P E
Sbjct: 352 SDRARLKARQGVRTVGFTEIDVVDPESGLSVERNGETVGEIVMRGSSVMLGYLKDPVGTE 411
Query: 425 ETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVV 484
+ NGW++TGD+GV H D Y+EIKDRSKDIII+GGEN+SSVEVE ++Y PAV E +VV
Sbjct: 412 KALKNGWFYTGDVGVIHSDGYLEIKDRSKDIIITGGENVSSVEVETVLYTIPAVNEVAVV 471
Query: 485 ARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVF-GPLPKTA 543
AR DE WGE+PCAFV+LK + + + E++M++CR KMP Y VPK++ F LPK++
Sbjct: 472 ARPDEFWGETPCAFVSLK---NGFSGKPTEEELMEYCRKKMPKYMVPKTVSFMDELPKSS 528
Query: 544 TGKIQKHVLRAKAKEMG 560
TGK+ K VLR AK+MG
Sbjct: 529 TGKVTKFVLRDIAKKMG 545
|
|
| TAIR|locus:2171402 AAE5 "acyl activating enzyme 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1362 (484.5 bits), Expect = 3.5e-139, P = 3.5e-139
Identities = 268/557 (48%), Positives = 372/557 (66%)
Query: 14 AANYMALTPLWFLDRAATVHPTRTSVVHGS-TRYTWLQTYQRCRRLASALCKRSIGLGCT 72
AAN LTP+ FL+RAATV+ TS+V+GS T YTW +T RC R+AS+L IG
Sbjct: 8 AANSPPLTPIGFLERAATVYGDCTSIVYGSNTVYTWRETNLRCLRVASSLSSIGIGRSDV 67
Query: 73 VAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAE 132
V++++PN PA+YE F VPM+GA+LN +N RL+A T++ LL H S ++ VD LA
Sbjct: 68 VSVLSPNTPAMYELQFAVPMSGAILNNINTRLDARTVSVLLRHCGSKLLFVDVFSVDLAV 127
Query: 133 EALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYA-LGRGAVEYEKFLQTGDPQFDWKPP 191
EA+ +M PP+L+ I D+ + D A + + Y+ + GD F W P
Sbjct: 128 EAISMMTTD------PPILVFIADKEEEGGDADVADRTKFSYTYDDLIHRGDLDFKWIRP 181
Query: 192 QDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGW 251
+ EW + L YTSGTT++PKGVV HRG ++MS+ + W + + VYLWTLP+FH NGW
Sbjct: 182 ESEWDPVVLNYTSGTTSAPKGVVHCHRGIFVMSIDSLIDWTVPKNPVYLWTLPIFHANGW 241
Query: 252 CYTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPH 311
Y W +AA+ GT++CLR+ A +Y I +GVTH C APVVLN +++A +E PL
Sbjct: 242 SYPWGIAAVGGTNVCLRKFDAPLIYRLIRDHGVTHMCGAPVVLN-MLSATNE--FQPLNR 298
Query: 312 VVHVNTAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMK 371
V++ TAGA PP +VL GF ++H YGL+ET G + CAWKP+W+ LP +AR+K
Sbjct: 299 PVNILTAGAPPPAAVLLRAESIGFVISHGYGLTETAGLNVSCAWKPQWNRLPASDRARLK 358
Query: 372 ARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANGW 431
ARQGVR +G ++DV+D + + V +G+T+GEIVM G+ +M GYLK+P E+ NGW
Sbjct: 359 ARQGVRTVGFTEIDVVDPESGRSVERNGETVGEIVMRGSSIMLGYLKDPVGTEKALKNGW 418
Query: 432 YHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERW 491
++TGD+GV H D Y+EIKDRSKDIII+GGEN+SSVEVE ++Y +PAV E +VVAR D W
Sbjct: 419 FYTGDVGVIHSDGYLEIKDRSKDIIITGGENVSSVEVETVLYTNPAVNEVAVVARPDVFW 478
Query: 492 GESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVF-GPLPKTATGKIQKH 550
GE+PCAFV+LK + ++ +++++CR KMP Y VPK++ F LPKT+TGK+ K
Sbjct: 479 GETPCAFVSLKSGL---TQRPTEVEMIEYCRKKMPKYMVPKTVSFVDELPKTSTGKVMKF 535
Query: 551 VLRAKAKEMGPVRKSKL 567
VLR AK+MG R S++
Sbjct: 536 VLREIAKKMGTTRLSRM 552
|
|
| TAIR|locus:2009774 BZO1 "benzoyloxyglucosinolate 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1331 (473.6 bits), Expect = 6.7e-136, P = 6.7e-136
Identities = 267/562 (47%), Positives = 359/562 (63%)
Query: 7 IDDLPKNAANYMALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRS 66
+DDL AN + LTP+ FL RA+ +P RTS+++G TR+TW QTY RC RLA++L +
Sbjct: 1 MDDLALCEANNVPLTPMTFLKRASECYPNRTSIIYGKTRFTWPQTYDRCCRLAASLISLN 60
Query: 67 IGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQE 126
I V+++APN PA+YE HF VPMAGAVLN +N RL+A +IA +L H+ ++ +D+
Sbjct: 61 ISKNDVVSVMAPNTPALYEMHFAVPMAGAVLNPINTRLDATSIAAILRHAKPKILFLDRS 120
Query: 127 YFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQF 186
+ LA E+L ++ + + P + I E+ PK + ++YE +Q G+P
Sbjct: 121 FEALARESLHLLSSEDSNLNLPVIFI---HENDFPKRASFE----ELDYECLIQRGEPTP 173
Query: 187 DWKPP----QDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWT 242
QDE I+L YTSGTTA PKGVV+SHRGAYL +LS + W M VYLWT
Sbjct: 174 SMVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLCTLSAIIGWEMGTCPVYLWT 233
Query: 243 LPMFHCNGWCYTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPS 302
LPMFHCNGW +TW AA GTS+C+R VTA +Y I + VTH C P V N ++ S
Sbjct: 234 LPMFHCNGWTFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNS 293
Query: 303 EDTILPLPHVVHVNTAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSL 362
D + P VHV T G+ PP +++ + + GF V H YG +E GP C W+ EW+ L
Sbjct: 294 LD-LSPRSGPVHVLTGGSPPPAALVKKVQRLGFQVMHAYGQTEATGPILFCEWQDEWNRL 352
Query: 363 PPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKA 422
P Q +KARQG+ +GL +DV + TQ+ P DGKT+GEI++ G+ +MKGYLKNPKA
Sbjct: 353 PENQQMELKARQGISILGLADVDVKNKETQKSAPRDGKTMGEILIKGSSIMKGYLKNPKA 412
Query: 423 NEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEAS 482
E F +GW +TGD+GV HPD ++EIKDRSKDIIISGGENISSVEVEN++Y +P VLE +
Sbjct: 413 TFEAFKHGWLNTGDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYKYPKVLETA 472
Query: 483 VVARADERWGESPCAFVTL-KPEV----DKSNEQQLAE-DIMKFCRAKMPAYWVPKSIVF 536
VVA WGE+PCAFV L K E D+ ++ Q E +++++CR +P + P+ +VF
Sbjct: 473 VVAMPHPTWGETPCAFVVLEKSETTIKEDRVDKFQTRERNLIEYCRENLPHFMCPRKVVF 532
Query: 537 -GPLPKTATGKIQKHVLRAKAK 557
LPK GKI K LR AK
Sbjct: 533 LEELPKNGNGKILKPKLRDIAK 554
|
|
| TAIR|locus:2027012 AT1G21530 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1330 (473.2 bits), Expect = 8.5e-136, P = 8.5e-136
Identities = 260/556 (46%), Positives = 367/556 (66%)
Query: 10 LPKNAANYMALTPLWFLDRAATVHPTRTSVVH-GSTRYTWLQTYQRCRRLASALCKRSIG 68
LP + +N LT L FLDRAA+V+ S++H +T +TW +T+ RC R+ASAL SIG
Sbjct: 5 LP-HPSNSTPLTVLGFLDRAASVYGDCPSILHTANTVHTWSETHNRCLRIASALTSSSIG 63
Query: 69 L--GCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQE 126
+ G V+++ PN+P++YE F VPM+GA+LN +N RL+A ++ LL HS S ++ VD
Sbjct: 64 IKQGQVVSVVGPNVPSVYELQFAVPMSGAILNNINPRLDAHALSVLLRHSESRLVFVDHR 123
Query: 127 YFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQF 186
L EA+ + + KP L+++ D+ D L YE+ ++ G+ +F
Sbjct: 124 SISLVLEAVSLFTQHE----KPHLVLLDDDQENDSSSASDFLDT----YEEIMERGNSRF 175
Query: 187 DWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMF 246
W PQ EWQ + L YTSGTT+SPKGVVLSHR +++++S L W + VYLWTLPMF
Sbjct: 176 KWIRPQTEWQPMVLNYTSGTTSSPKGVVLSHRAIFMLTVSSLLDWSVPNRPVYLWTLPMF 235
Query: 247 HCNGWCYTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTI 306
H NGW YTW AA+ T+IC R+V A +Y+ I K+ VTH CAAP+VLN ++N P
Sbjct: 236 HANGWGYTWGTAAVGATNICTRRVDAPTIYNLIDKHNVTHMCAAPMVLNMLINYPLST-- 293
Query: 307 LPLPHVVHVNTAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPET 366
PL + V V T+GA PP +++ GF+V+H+YGL+ET GP CAWKP+WD L P
Sbjct: 294 -PLKNPVQVMTSGAPPPATIISRAESLGFNVSHSYGLTETSGPVVSCAWKPKWDHLDPLE 352
Query: 367 QARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEET 426
+AR+K+RQGVR +G ++DV D +T + V DG ++GEIV G+ VM GY K+P+
Sbjct: 353 RARLKSRQGVRTLGFTEVDVRDRKTGKSVKHDGVSVGEIVFRGSSVMLGYYKDPQGTAAC 412
Query: 427 FA-NGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVA 485
+GW+++GD+GV H D Y+EIKDRSKD+II GGENISS E+E ++Y +P V EA+VVA
Sbjct: 413 MREDGWFYSGDIGVIHKDGYLEIKDRSKDVIICGGENISSAEIETVLYTNPVVKEAAVVA 472
Query: 486 RADERWGESPCAFVTLKPEVDKSNEQQLAE-DIMKFCRAKMPAYWVPKSIVFGP-LPKTA 543
+ D+ WGE+PCAFV+LK + + + E +I +FC+ K+P Y VP+ ++F LPKT+
Sbjct: 473 KPDKMWGETPCAFVSLKCDNNGDGSVPVTEREIREFCKTKLPKYMVPRKVIFQEELPKTS 532
Query: 544 TGKIQKHVLRAKAKEM 559
TGKIQK +LR AK +
Sbjct: 533 TGKIQKFLLRQMAKTL 548
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q8VZF1 | AEE7_ARATH | 6, ., 2, ., 1, ., 2 | 0.7886 | 0.9929 | 0.9894 | yes | no |
| Q5SKN9 | LCFCS_THET8 | 6, ., 2, ., 1, ., 3 | 0.3448 | 0.8871 | 0.9297 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| GSVIVG00033112001 | SubName- Full=Chromosome chr5 scaffold_64, whole genome shotgun sequence; (567 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 567 | |||
| PLN02479 | 567 | PLN02479, PLN02479, acetate-CoA ligase | 0.0 | |
| cd12118 | 520 | cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt | 0.0 | |
| PRK08162 | 545 | PRK08162, PRK08162, acyl-CoA synthetase; Validated | 0.0 | |
| PLN03102 | 579 | PLN03102, PLN03102, acyl-activating enzyme; Provis | 0.0 | |
| cd12119 | 517 | cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth | 1e-140 | |
| cd05915 | 509 | cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase | 1e-138 | |
| PRK06187 | 521 | PRK06187, PRK06187, long-chain-fatty-acid--CoA lig | 1e-137 | |
| COG0318 | 534 | COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/ | 1e-133 | |
| cd05929 | 342 | cd05929, BACL_like, Bacterial Bile acid CoA ligase | 1e-101 | |
| cd05917 | 347 | cd05917, FACL_like_2, Uncharacterized subfamily of | 2e-89 | |
| pfam00501 | 412 | pfam00501, AMP-binding, AMP-binding enzyme | 4e-88 | |
| cd05936 | 468 | cd05936, FC-FACS_FadD_like, Prokaryotic long-chain | 5e-86 | |
| PRK07656 | 513 | PRK07656, PRK07656, long-chain-fatty-acid--CoA lig | 1e-85 | |
| PRK06018 | 542 | PRK06018, PRK06018, putative acyl-CoA synthetase; | 2e-84 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 8e-84 | |
| cd04433 | 338 | cd04433, AFD_class_I, Adenylate forming domain, Cl | 8e-78 | |
| PRK07008 | 539 | PRK07008, PRK07008, long-chain-fatty-acid--CoA lig | 1e-75 | |
| cd05903 | 437 | cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li | 2e-71 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 4e-69 | |
| PRK03640 | 483 | PRK03640, PRK03640, O-succinylbenzoic acid--CoA li | 6e-68 | |
| cd05926 | 345 | cd05926, FACL_fum10p_like, Subfamily of fatty acid | 1e-67 | |
| COG0365 | 528 | COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat | 6e-64 | |
| PRK13295 | 547 | PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig | 6e-63 | |
| PRK07786 | 542 | PRK07786, PRK07786, long-chain-fatty-acid--CoA lig | 2e-62 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 7e-62 | |
| PRK06839 | 496 | PRK06839, PRK06839, acyl-CoA synthetase; Validated | 3e-61 | |
| cd05911 | 487 | cd05911, Firefly_Luc_like, Firefly luciferase of l | 4e-61 | |
| PRK08314 | 546 | PRK08314, PRK08314, long-chain-fatty-acid--CoA lig | 7e-61 | |
| cd05912 | 407 | cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase | 1e-60 | |
| cd05904 | 504 | cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | 4e-60 | |
| PRK12583 | 558 | PRK12583, PRK12583, acyl-CoA synthetase; Provision | 2e-57 | |
| PRK06145 | 497 | PRK06145, PRK06145, acyl-CoA synthetase; Validated | 6e-57 | |
| PRK06188 | 524 | PRK06188, PRK06188, acyl-CoA synthetase; Validated | 5e-56 | |
| TIGR01923 | 436 | TIGR01923, menE, O-succinylbenzoate-CoA ligase | 4e-53 | |
| PRK07470 | 528 | PRK07470, PRK07470, acyl-CoA synthetase; Validated | 4e-52 | |
| PRK05620 | 576 | PRK05620, PRK05620, long-chain-fatty-acid--CoA lig | 8e-52 | |
| cd05944 | 359 | cd05944, FACL_like_4, Uncharacterized subfamily of | 1e-51 | |
| cd05959 | 506 | cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and | 3e-51 | |
| TIGR03208 | 538 | TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate | 5e-51 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 1e-50 | |
| PRK07529 | 632 | PRK07529, PRK07529, AMP-binding domain protein; Va | 2e-50 | |
| cd05922 | 350 | cd05922, FACL_like_6, Uncharacterized subfamily of | 3e-50 | |
| cd05920 | 483 | cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l | 2e-49 | |
| PRK05605 | 573 | PRK05605, PRK05605, long-chain-fatty-acid--CoA lig | 7e-49 | |
| cd05919 | 436 | cd05919, BCL_like, Benzoate CoA ligase (BCL) and s | 3e-48 | |
| cd05972 | 430 | cd05972, MACS_like, Medium-chain acyl-CoA syntheta | 9e-48 | |
| PRK06710 | 563 | PRK06710, PRK06710, long-chain-fatty-acid--CoA lig | 7e-47 | |
| PRK08276 | 502 | PRK08276, PRK08276, long-chain-fatty-acid--CoA lig | 1e-46 | |
| PRK13391 | 511 | PRK13391, PRK13391, acyl-CoA synthetase; Provision | 2e-46 | |
| PRK06155 | 542 | PRK06155, PRK06155, crotonobetaine/carnitine-CoA l | 5e-46 | |
| PRK09088 | 488 | PRK09088, PRK09088, acyl-CoA synthetase; Validated | 1e-45 | |
| PRK07798 | 533 | PRK07798, PRK07798, acyl-CoA synthetase; Validated | 5e-44 | |
| COG1021 | 542 | COG1021, EntE, Peptide arylation enzymes [Secondar | 3e-43 | |
| PRK08315 | 559 | PRK08315, PRK08315, AMP-binding domain protein; Va | 7e-43 | |
| cd05923 | 495 | cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | 3e-42 | |
| cd05971 | 439 | cd05971, MACS_like_3, Uncharacterized subfamily of | 2e-41 | |
| PLN02860 | 563 | PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | 5e-41 | |
| PRK08008 | 517 | PRK08008, caiC, putative crotonobetaine/carnitine- | 4e-40 | |
| cd05907 | 456 | cd05907, VL_LC_FACS_like, Long-chain fatty acid Co | 6e-40 | |
| PRK12406 | 509 | PRK12406, PRK12406, long-chain-fatty-acid--CoA lig | 3e-39 | |
| cd05974 | 433 | cd05974, MACS_like_1, Uncharacterized subfamily of | 7e-39 | |
| PRK06087 | 547 | PRK06087, PRK06087, short chain acyl-CoA synthetas | 8e-39 | |
| PLN02330 | 546 | PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | 1e-38 | |
| PLN02574 | 560 | PLN02574, PLN02574, 4-coumarate--CoA ligase-like | 1e-38 | |
| PLN02246 | 537 | PLN02246, PLN02246, 4-coumarate--CoA ligase | 3e-38 | |
| TIGR03205 | 541 | TIGR03205, pimA, dicarboxylate--CoA ligase PimA | 3e-38 | |
| cd05973 | 440 | cd05973, MACS_like_2, Uncharacterized subfamily of | 5e-37 | |
| cd05940 | 444 | cd05940, FATP_FACS, Fatty acid transport proteins | 2e-36 | |
| TIGR02262 | 508 | TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil | 2e-35 | |
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 3e-35 | |
| cd05928 | 530 | cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co | 1e-34 | |
| TIGR03098 | 517 | TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form | 1e-34 | |
| PRK06164 | 540 | PRK06164, PRK06164, acyl-CoA synthetase; Validated | 4e-34 | |
| PRK07787 | 471 | PRK07787, PRK07787, acyl-CoA synthetase; Validated | 6e-34 | |
| PRK07788 | 549 | PRK07788, PRK07788, acyl-CoA synthetase; Validated | 1e-33 | |
| TIGR02275 | 526 | TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP | 3e-33 | |
| PRK06178 | 567 | PRK06178, PRK06178, acyl-CoA synthetase; Validated | 4e-33 | |
| PRK13382 | 537 | PRK13382, PRK13382, acyl-CoA synthetase; Provision | 1e-32 | |
| cd05918 | 447 | cd05918, A_NRPS_SidN3_like, The adenylation (A) do | 9e-32 | |
| cd05969 | 443 | cd05969, MACS_like_4, Uncharacterized subfamily of | 3e-31 | |
| cd05970 | 537 | cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s | 4e-31 | |
| PRK07059 | 557 | PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig | 7e-31 | |
| cd05967 | 607 | cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | 1e-30 | |
| cd05945 | 447 | cd05945, DltA, D-alanine:D-alanyl carrier protein | 2e-30 | |
| PRK05677 | 562 | PRK05677, PRK05677, long-chain-fatty-acid--CoA lig | 8e-30 | |
| cd05909 | 489 | cd05909, AAS_C, C-terminal domain of the acyl-acyl | 2e-29 | |
| PRK07867 | 529 | PRK07867, PRK07867, acyl-CoA synthetase; Validated | 4e-29 | |
| PRK13390 | 501 | PRK13390, PRK13390, acyl-CoA synthetase; Provision | 5e-29 | |
| PRK08974 | 560 | PRK08974, PRK08974, long-chain-fatty-acid--CoA lig | 3e-28 | |
| PRK05852 | 534 | PRK05852, PRK05852, acyl-CoA synthetase; Validated | 3e-28 | |
| PRK04319 | 570 | PRK04319, PRK04319, acetyl-CoA synthetase; Provisi | 5e-28 | |
| cd05958 | 487 | cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | 1e-26 | |
| PRK08751 | 560 | PRK08751, PRK08751, putative long-chain fatty acyl | 3e-26 | |
| PRK12492 | 562 | PRK12492, PRK12492, long-chain-fatty-acid--CoA lig | 4e-25 | |
| PRK08279 | 600 | PRK08279, PRK08279, long-chain-acyl-CoA synthetase | 5e-25 | |
| PRK13383 | 516 | PRK13383, PRK13383, acyl-CoA synthetase; Provision | 1e-24 | |
| cd05906 | 560 | cd05906, A_NRPS_TubE_like, The adenylation domain | 2e-24 | |
| TIGR01733 | 409 | TIGR01733, AA-adenyl-dom, amino acid adenylation d | 2e-24 | |
| cd12117 | 474 | cd12117, A_NRPS_Srf_like, The adenylation domain o | 2e-24 | |
| PRK07514 | 504 | PRK07514, PRK07514, malonyl-CoA synthase; Validate | 6e-24 | |
| PRK13388 | 540 | PRK13388, PRK13388, acyl-CoA synthetase; Provision | 6e-24 | |
| PRK10946 | 536 | PRK10946, entE, enterobactin synthase subunit E; P | 1e-23 | |
| cd05966 | 602 | cd05966, ACS, Acetyl-CoA synthetase (also known as | 1e-23 | |
| cd12115 | 449 | cd12115, A_NRPS_Sfm_like, The adenylation domain o | 2e-23 | |
| cd05924 | 365 | cd05924, FACL_like_5, Uncharacterized subfamily of | 7e-23 | |
| TIGR02188 | 625 | TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | 5e-22 | |
| COG1022 | 613 | COG1022, FAA1, Long-chain acyl-CoA synthetases (AM | 9e-22 | |
| PRK05857 | 540 | PRK05857, PRK05857, acyl-CoA synthetase; Validated | 2e-21 | |
| PRK08633 | 1146 | PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola | 3e-21 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 4e-21 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 1e-20 | |
| PRK07638 | 487 | PRK07638, PRK07638, acyl-CoA synthetase; Validated | 2e-20 | |
| COG1020 | 642 | COG1020, EntF, Non-ribosomal peptide synthetase mo | 2e-20 | |
| cd05933 | 594 | cd05933, ACSBG_like, Bubblegum-like very long-chai | 6e-20 | |
| TIGR01734 | 502 | TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho | 4e-19 | |
| PRK00174 | 637 | PRK00174, PRK00174, acetyl-CoA synthetase; Provisi | 8e-19 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 9e-19 | |
| cd05931 | 547 | cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | 2e-18 | |
| PRK09029 | 458 | PRK09029, PRK09029, O-succinylbenzoic acid--CoA li | 4e-18 | |
| cd12116 | 438 | cd12116, A_NRPS_Ta1_like, The adenylation domain o | 1e-17 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 2e-17 | |
| cd05908 | 499 | cd05908, A_NRPS_MycA_like, The adenylation domain | 8e-17 | |
| TIGR02316 | 628 | TIGR02316, propion_prpE, propionate--CoA ligase | 8e-17 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 9e-17 | |
| cd05927 | 539 | cd05927, LC-FACS_euk, Eukaryotic long-chain fatty | 1e-16 | |
| cd05910 | 455 | cd05910, FACL_like_1, Uncharacterized subfamily of | 2e-16 | |
| COG1022 | 613 | COG1022, FAA1, Long-chain acyl-CoA synthetases (AM | 3e-16 | |
| PRK07445 | 452 | PRK07445, PRK07445, O-succinylbenzoic acid--CoA li | 3e-16 | |
| PLN02614 | 666 | PLN02614, PLN02614, long-chain acyl-CoA synthetase | 4e-16 | |
| cd05968 | 474 | cd05968, AACS_like, Uncharacterized acyl-CoA synth | 6e-16 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 8e-16 | |
| cd12114 | 476 | cd12114, A_NRPS_TlmIV_like, The adenylation domain | 5e-15 | |
| PRK08315 | 559 | PRK08315, PRK08315, AMP-binding domain protein; Va | 1e-14 | |
| PLN02430 | 660 | PLN02430, PLN02430, long-chain-fatty-acid-CoA liga | 3e-14 | |
| PRK09274 | 552 | PRK09274, PRK09274, peptide synthase; Provisional | 1e-13 | |
| PLN02861 | 660 | PLN02861, PLN02861, long-chain-fatty-acid-CoA liga | 1e-13 | |
| cd05937 | 468 | cd05937, FATP_chFAT1_like, Uncharacterized subfami | 2e-13 | |
| cd05938 | 535 | cd05938, hsFATP2a_ACSVL_like, Fatty acid transport | 3e-13 | |
| PLN02654 | 666 | PLN02654, PLN02654, acetate-CoA ligase | 4e-13 | |
| cd05932 | 504 | cd05932, LC_FACS_bac, Bacterial long-chain fatty a | 6e-12 | |
| cd05932 | 504 | cd05932, LC_FACS_bac, Bacterial long-chain fatty a | 8e-12 | |
| PRK07824 | 358 | PRK07824, PRK07824, O-succinylbenzoic acid--CoA li | 8e-12 | |
| PLN02387 | 696 | PLN02387, PLN02387, long-chain-fatty-acid-CoA liga | 9e-12 | |
| PTZ00237 | 647 | PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisi | 3e-11 | |
| PRK09192 | 579 | PRK09192, PRK09192, acyl-CoA synthetase; Validated | 3e-11 | |
| PRK10524 | 629 | PRK10524, prpE, propionyl-CoA synthetase; Provisio | 5e-11 | |
| PRK08308 | 414 | PRK08308, PRK08308, acyl-CoA synthetase; Validated | 6e-11 | |
| PRK04813 | 503 | PRK04813, PRK04813, D-alanine--poly(phosphoribitol | 7e-11 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 1e-10 | |
| cd05931 | 547 | cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | 1e-10 | |
| cd12114 | 476 | cd12114, A_NRPS_TlmIV_like, The adenylation domain | 1e-10 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 4e-10 | |
| PRK06334 | 539 | PRK06334, PRK06334, long chain fatty acid--[acyl-c | 1e-09 | |
| TIGR01217 | 652 | TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase | 2e-09 | |
| cd05907 | 456 | cd05907, VL_LC_FACS_like, Long-chain fatty acid Co | 3e-09 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 3e-09 | |
| cd05933 | 594 | cd05933, ACSBG_like, Bubblegum-like very long-chai | 5e-09 | |
| PRK10252 | 1296 | PRK10252, entF, enterobactin synthase subunit F; P | 5e-09 | |
| PRK06060 | 705 | PRK06060, PRK06060, acyl-CoA synthetase; Validated | 6e-09 | |
| PRK06814 | 1140 | PRK06814, PRK06814, acylglycerophosphoethanolamine | 9e-09 | |
| cd05914 | 448 | cd05914, FACL_like_3, Uncharacterized subfamily of | 1e-08 | |
| PRK05851 | 525 | PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c | 3e-08 | |
| PRK07768 | 545 | PRK07768, PRK07768, long-chain-fatty-acid--CoA lig | 1e-07 | |
| TIGR03443 | 1389 | TIGR03443, alpha_am_amid, L-aminoadipate-semialdeh | 1e-07 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 2e-07 | |
| PRK06178 | 567 | PRK06178, PRK06178, acyl-CoA synthetase; Validated | 2e-07 | |
| pfam13193 | 43 | pfam13193, DUF4009, Domain of unknown function (DU | 2e-07 | |
| PLN02736 | 651 | PLN02736, PLN02736, long-chain acyl-CoA synthetase | 3e-07 | |
| cd05968 | 474 | cd05968, AACS_like, Uncharacterized acyl-CoA synth | 4e-07 | |
| cd05921 | 559 | cd05921, FCS, Feruloyl-CoA synthetase (FCS) | 9e-07 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 2e-06 | |
| cd05943 | 616 | cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac | 2e-06 | |
| cd05927 | 539 | cd05927, LC-FACS_euk, Eukaryotic long-chain fatty | 4e-06 | |
| PRK07769 | 631 | PRK07769, PRK07769, long-chain-fatty-acid--CoA lig | 5e-06 | |
| PRK07514 | 504 | PRK07514, PRK07514, malonyl-CoA synthase; Validate | 7e-06 | |
| PTZ00216 | 700 | PTZ00216, PTZ00216, acyl-CoA synthetase; Provision | 7e-06 | |
| PRK07768 | 545 | PRK07768, PRK07768, long-chain-fatty-acid--CoA lig | 9e-06 | |
| cd05903 | 437 | cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li | 2e-05 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 2e-05 | |
| PRK04319 | 570 | PRK04319, PRK04319, acetyl-CoA synthetase; Provisi | 2e-05 | |
| PLN02736 | 651 | PLN02736, PLN02736, long-chain acyl-CoA synthetase | 2e-05 | |
| PRK07769 | 631 | PRK07769, PRK07769, long-chain-fatty-acid--CoA lig | 2e-05 | |
| cd05939 | 474 | cd05939, hsFATP4_like, Fatty acid transport protei | 2e-05 | |
| PRK05850 | 578 | PRK05850, PRK05850, acyl-CoA synthetase; Validated | 2e-05 | |
| cd05920 | 483 | cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l | 3e-05 | |
| cd05939 | 474 | cd05939, hsFATP4_like, Fatty acid transport protei | 3e-05 | |
| PLN03051 | 499 | PLN03051, PLN03051, acyl-activating enzyme; Provis | 3e-05 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 4e-05 | |
| PTZ00216 | 700 | PTZ00216, PTZ00216, acyl-CoA synthetase; Provision | 7e-05 | |
| PLN03052 | 728 | PLN03052, PLN03052, acetate--CoA ligase; Provision | 9e-05 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 1e-04 | |
| PRK08180 | 614 | PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe | 1e-04 | |
| cd05940 | 444 | cd05940, FATP_FACS, Fatty acid transport proteins | 3e-04 | |
| PRK08043 | 718 | PRK08043, PRK08043, bifunctional acyl-[acyl carrie | 3e-04 | |
| PRK12476 | 612 | PRK12476, PRK12476, putative fatty-acid--CoA ligas | 4e-04 | |
| cd12115 | 449 | cd12115, A_NRPS_Sfm_like, The adenylation domain o | 6e-04 | |
| PLN02430 | 660 | PLN02430, PLN02430, long-chain-fatty-acid-CoA liga | 0.001 | |
| cd05937 | 468 | cd05937, FATP_chFAT1_like, Uncharacterized subfami | 0.001 | |
| cd05971 | 439 | cd05971, MACS_like_3, Uncharacterized subfamily of | 0.002 |
| >gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 1158 bits (2998), Expect = 0.0
Identities = 479/567 (84%), Positives = 520/567 (91%)
Query: 1 MSMAKGIDDLPKNAANYMALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLAS 60
M+ + IDDLPKNAANY ALTPLWFL+RAA VHPTR SVVHGS RYTW QTYQRCRRLAS
Sbjct: 1 MAKERDIDDLPKNAANYTALTPLWFLERAAVVHPTRKSVVHGSVRYTWAQTYQRCRRLAS 60
Query: 61 ALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAV 120
AL KRSIG G TVA+IAPNIPA+YEAHFGVPMAGAV+N VNIRLNAPTIAFLL HS S V
Sbjct: 61 ALAKRSIGPGSTVAVIAPNIPAMYEAHFGVPMAGAVVNCVNIRLNAPTIAFLLEHSKSEV 120
Query: 121 IMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQ 180
+MVDQE+F LAEEALKI+ EK FKPPLLIVIGD +CDPK L+YALG+GA+EYEKFL+
Sbjct: 121 VMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYALGKGAIEYEKFLE 180
Query: 181 TGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYL 240
TGDP+F WKPP DEWQSIALGYTSGTTASPKGVVL HRGAYLM+LS ALIWGMNEGAVYL
Sbjct: 181 TGDPEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIWGMNEGAVYL 240
Query: 241 WTLPMFHCNGWCYTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNA 300
WTLPMFHCNGWC+TW+LAALCGT+ICLRQVTAKA+YSAIA YGVTHFCAAPVVLN+IVNA
Sbjct: 241 WTLPMFHCNGWCFTWTLAALCGTNICLRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNA 300
Query: 301 PSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWD 360
P +TILPLP VVHV TAGAAPPPSVL AMS+KGF VTHTYGLSETYGPSTVCAWKPEWD
Sbjct: 301 PKSETILPLPRVVHVMTAGAAPPPSVLFAMSEKGFRVTHTYGLSETYGPSTVCAWKPEWD 360
Query: 361 SLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNP 420
SLPPE QAR+ ARQGVR+IGLE LDV+DT+T +PVPADGKT+GEIVM GN+VMKGYLKNP
Sbjct: 361 SLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNP 420
Query: 421 KANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLE 480
KANEE FANGW+H+GDLGVKHPD YIEIKDRSKDIIISGGENISS+EVEN++Y HPAVLE
Sbjct: 421 KANEEAFANGWFHSGDLGVKHPDGYIEIKDRSKDIIISGGENISSLEVENVVYTHPAVLE 480
Query: 481 ASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGPLP 540
ASVVAR DERWGESPCAFVTLKP VDKS+E LAEDIMKFCR ++PAYWVPKS+VFGPLP
Sbjct: 481 ASVVARPDERWGESPCAFVTLKPGVDKSDEAALAEDIMKFCRERLPAYWVPKSVVFGPLP 540
Query: 541 KTATGKIQKHVLRAKAKEMGPVRKSKL 567
KTATGKIQKHVLRAKAKEMGPV+KS+L
Sbjct: 541 KTATGKIQKHVLRAKAKEMGPVKKSRL 567
|
Length = 567 |
| >gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis | Back alignment and domain information |
|---|
Score = 879 bits (2273), Expect = 0.0
Identities = 317/538 (58%), Positives = 385/538 (71%), Gaps = 18/538 (3%)
Query: 17 YMALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAII 76
Y+ LTPL FL+RAA V+P RT+VV+G RYT+ +TY RCRRLASAL K IG G VA++
Sbjct: 1 YVPLTPLSFLERAAKVYPDRTAVVYGDRRYTYRETYDRCRRLASALSKLGIGKGDVVAVL 60
Query: 77 APNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALK 136
APN PA+ EAHFGVPMAGAVL +N RL+A IAF+L HS + V+ VDQE+ LAEEAL
Sbjct: 61 APNTPAMLEAHFGVPMAGAVLVPLNTRLDADDIAFILNHSEAKVLFVDQEFLSLAEEALA 120
Query: 137 IMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQ 196
++ K ++ A +YE L GDP PP DEW
Sbjct: 121 LLSTK------------EIIDTEIIVISPAAEDSEEGDYEDLLAGGDPDPLPIPPDDEWD 168
Query: 197 SIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWS 256
I+L YTSGTT +PKGVV +HRGAYL +L + WGM + VYLWTLPMFHCNGWC+ W+
Sbjct: 169 PISLNYTSGTTGNPKGVVYTHRGAYLNALGNVIEWGMPDRPVYLWTLPMFHCNGWCFPWA 228
Query: 257 LAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVN 316
+ A+ GT +CLR+V A A+Y I K+ VTH C AP VLN + NAP D LPLP V V
Sbjct: 229 ITAVGGTHVCLRKVDAPAIYDLIEKHKVTHLCGAPTVLNMLANAPEAD-KLPLPRPVRVM 287
Query: 317 TAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGV 376
TAGA PPP+V+ M + GF VTH YGL+ETYGP TVC WKPEWD+LP E +AR+KARQGV
Sbjct: 288 TAGAPPPPAVIKKMEELGFEVTHVYGLTETYGPITVCEWKPEWDALPAEERARLKARQGV 347
Query: 377 RFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGD 436
R++GLE++DV+D T + VP DGKTIGEIVM GN VMKGY KNP+A EE FA GW+H+GD
Sbjct: 348 RYVGLEEVDVVDPETMKDVPRDGKTIGEIVMRGNTVMKGYYKNPEATEEAFAGGWFHSGD 407
Query: 437 LGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPC 496
L V HPD YIEIKDRSKDIIISGGENISS+EVE ++Y HPAVLEA+VVAR DE+WGE+PC
Sbjct: 408 LAVVHPDGYIEIKDRSKDIIISGGENISSIEVEGVLYKHPAVLEAAVVARPDEKWGETPC 467
Query: 497 AFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGPLPKTATGKIQKHVLRA 554
AFV LKP + E+++++CR K+ + VPK++ F LPKTATGKIQK VLR
Sbjct: 468 AFVVLKPGASVT-----EEELIEYCREKLAHFKVPKTVEFVELPKTATGKIQKFVLRE 520
|
This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520 |
| >gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 859 bits (2222), Expect = 0.0
Identities = 321/557 (57%), Positives = 410/557 (73%), Gaps = 21/557 (3%)
Query: 8 DDLPKNAANYMALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSI 67
L +NAANY+ LTPL FL+RAA V+P R +V+HG R TW +TY RCRRLASAL +R I
Sbjct: 6 QGLDRNAANYVPLTPLSFLERAAEVYPDRPAVIHGDRRRTWAETYARCRRLASALARRGI 65
Query: 68 GLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEY 127
G G TVA++ PNIPA+ EAHFGVPMAGAVLN +N RL+A +IAF+L H + V++VD E+
Sbjct: 66 GRGDTVAVLLPNIPAMVEAHFGVPMAGAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEF 125
Query: 128 FKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGR--GAVEYEKFLQTGDPQ 185
++A EAL ++ P +VI + DP+ Y GR GA++YE FL +GDP
Sbjct: 126 AEVAREALALLPG--------PKPLVIDVD--DPE---YPGGRFIGALDYEAFLASGDPD 172
Query: 186 FDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPM 245
F W P DEW +IAL YTSGTT +PKGVV HRGAYL +LS L WGM + VYLWTLPM
Sbjct: 173 FAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWGMPKHPVYLWTLPM 232
Query: 246 FHCNGWCYTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDT 305
FHCNGWC+ W++AA GT++CLR+V K ++ I ++GVTH+C AP+VL++++NAP+E
Sbjct: 233 FHCNGWCFPWTVAARAGTNVCLRKVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEWR 292
Query: 306 ILPLPHVVHVNTAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPE 365
+ H VH AGAAPP +V+ M + GF +TH YGL+ETYGP+TVCAW+PEWD+LP +
Sbjct: 293 A-GIDHPVHAMVAGAAPPAAVIAKMEEIGFDLTHVYGLTETYGPATVCAWQPEWDALPLD 351
Query: 366 TQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEE 425
+A++KARQGVR+ E + V+D T QPVPADG+TIGEI+ GN+VMKGYLKNPKA EE
Sbjct: 352 ERAQLKARQGVRYPLQEGVTVLDPDTMQPVPADGETIGEIMFRGNIVMKGYLKNPKATEE 411
Query: 426 TFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVA 485
FA GW+HTGDL V HPD YI+IKDRSKDIIISGGENISS+EVE+++Y HPAVL A+VVA
Sbjct: 412 AFAGGWFHTGDLAVLHPDGYIKIKDRSKDIIISGGENISSIEVEDVLYRHPAVLVAAVVA 471
Query: 486 RADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGPLPKTATG 545
+ D +WGE PCAFV LK + E+I+ CR + + VPK++VFG LPKT+TG
Sbjct: 472 KPDPKWGEVPCAFVELKDGASAT-----EEEIIAHCREHLAGFKVPKAVVFGELPKTSTG 526
Query: 546 KIQKHVLRAKAKEMGPV 562
KIQK VLR +AK + +
Sbjct: 527 KIQKFVLREQAKSLKAI 543
|
Length = 545 |
| >gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Score = 563 bits (1452), Expect = 0.0
Identities = 270/564 (47%), Positives = 356/564 (63%), Gaps = 20/564 (3%)
Query: 7 IDDLPKNAANYMALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRS 66
+D+L AN + LTP+ FL RA+ +P RTS+++G TR+TW QTY RC RLA++L +
Sbjct: 1 MDNLALCEANNVPLTPITFLKRASECYPNRTSIIYGKTRFTWPQTYDRCCRLAASLISLN 60
Query: 67 IGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQE 126
I V+++APN PA+YE HF VPMAGAVLN +N RL+A +IA +L H+ ++ VD+
Sbjct: 61 ITKNDVVSVLAPNTPAMYEMHFAVPMAGAVLNPINTRLDATSIAAILRHAKPKILFVDRS 120
Query: 127 YFKLAEEALKIM-EEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQ 185
+ LA E L ++ E SN L ++ E PK ++YE +Q G+P
Sbjct: 121 FEPLAREVLHLLSSEDSN----LNLPVIFIHEIDFPKRPSSE----ELDYECLIQRGEPT 172
Query: 186 FDWKPP----QDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLW 241
QDE I+L YTSGTTA PKGVV+SHRGAYL +LS + W M VYLW
Sbjct: 173 PSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPVYLW 232
Query: 242 TLPMFHCNGWCYTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAP 301
TLPMFHCNGW +TW AA GTS+C+R VTA +Y I + VTH C P V N ++
Sbjct: 233 TLPMFHCNGWTFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGN 292
Query: 302 SEDTILPLPHVVHVNTAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDS 361
S D + P VHV T G+ PP +++ + + GF V H YGL+E GP C W+ EW+
Sbjct: 293 SLD-LSPRSGPVHVLTGGSPPPAALVKKVQRLGFQVMHAYGLTEATGPVLFCEWQDEWNR 351
Query: 362 LPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPK 421
LP Q +KARQGV +GL +DV + TQ+ VP DGKT+GEIV+ G+ +MKGYLKNPK
Sbjct: 352 LPENQQMELKARQGVSILGLADVDVKNKETQESVPRDGKTMGEIVIKGSSIMKGYLKNPK 411
Query: 422 ANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEA 481
A E F +GW +TGD+GV HPD ++EIKDRSKDIIISGGENISSVEVEN++Y +P VLE
Sbjct: 412 ATSEAFKHGWLNTGDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYKYPKVLET 471
Query: 482 SVVARADERWGESPCAFVTLK--PEVDKSNEQQLAE---DIMKFCRAKMPAYWVPKSIVF 536
+VVA WGE+PCAFV L+ + +L D++++CR +P + P+ +VF
Sbjct: 472 AVVAMPHPTWGETPCAFVVLEKGETTKEDRVDKLVTRERDLIEYCRENLPHFMCPRKVVF 531
Query: 537 -GPLPKTATGKIQKHVLRAKAKEM 559
LPK GKI K LR AK +
Sbjct: 532 LQELPKNGNGKILKPKLRDIAKGL 555
|
Length = 579 |
| >gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 415 bits (1068), Expect = e-140
Identities = 193/538 (35%), Positives = 277/538 (51%), Gaps = 31/538 (5%)
Query: 25 FLDRAATVHPTRTSV---VHGS-TRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNI 80
L+ AA R V GS RYT+ Y+R RRLA+AL + G VA +A N
Sbjct: 1 ILEHAARYFGDREIVSRTPDGSIHRYTYADFYRRVRRLANALESLGVKPGDRVATLAWNT 60
Query: 81 PAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEE 140
E +F VP GAVL+ +N RL+ IA+++ H+ VI VD ++ L E
Sbjct: 61 HRHLELYFAVPGMGAVLHTLNPRLSPEQIAYIINHAEDKVIFVDDDFLPLLEA------- 113
Query: 141 KSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIAL 200
P L V D D+ YE+ L+ P+++W P DE + L
Sbjct: 114 -----IAPRLPTVKAVVVYDDADMPETSLPNVYAYEELLEEESPEYEW-PELDENTAAGL 167
Query: 201 GYTSGTTASPKGVVLSHRGAYLMSLSVALI--WGMNEGAVYLWTLPMFHCNGWCYTWSLA 258
YTSGTT +PKGVV SHR L +L+ AL G++E L +PMFH N W ++ A
Sbjct: 168 CYTSGTTGNPKGVVYSHRSLVLHTLASALPDSLGLSESDTVLPVVPMFHVNAWGLPYA-A 226
Query: 259 ALCGTSICL--RQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVN 316
+ G + L R + ++ I + VT P + ++N E L + V
Sbjct: 227 TMVGAKLVLPGRYLDPASLLDLIEEEKVTVSAGVPTIWLGLLNYL-EANGKDLSSLRRVV 285
Query: 317 TAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGV 376
G+A P S++ + ++G V H +G++ET TV KP LP E + ++A+QG
Sbjct: 286 VGGSALPRSLIEKLEERGVEVIHAWGMTETSPLGTVSRLKPHLVDLPEEEKLELRAKQGR 345
Query: 377 RFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGD 436
G+E L ++D +P DGKT+GE+V+ G V Y K+P+ EE +GW+ TGD
Sbjct: 346 PVPGVE-LRIVDDEGN-ELPWDGKTVGELVVRGPWVTGSYYKDPEKTEELTRDGWFRTGD 403
Query: 437 LGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPC 496
+ V D YI+I DR+KD+I SGGE ISSVE+EN + HPAV EA+VV E+WGE P
Sbjct: 404 VAVIDEDGYIQITDRAKDVIKSGGEWISSVELENALMAHPAVAEAAVVGVPHEKWGERPL 463
Query: 497 AFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLR 553
A V LKP + E++++ K+ +W+P +VF +PKT+ GK K LR
Sbjct: 464 AVVVLKP-----GAKVTEEELLEHLAKKVAKWWLPDRVVFVDEIPKTSVGKFDKKALR 516
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517 |
| >gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 409 bits (1053), Expect = e-138
Identities = 159/540 (29%), Positives = 233/540 (43%), Gaps = 39/540 (7%)
Query: 20 LTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPN 79
R V T R T+ + YQR RRL L +G+G VA + N
Sbjct: 2 ERAAALFGRKEVVSRLHT---GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFN 58
Query: 80 IPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIME 139
EA+F VP GAVL+ N RL+ IA++L H+ V++ D L E +
Sbjct: 59 HFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGEL- 117
Query: 140 EKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIA 199
+ D K E + + E +
Sbjct: 118 --KTVQHFVV------------MDEKAP------EGYLAYEEALGEEADPVRVPERAACG 157
Query: 200 LGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGA--VYLWTLPMFHCNGWCYTWSL 257
+ YT+GTT PKGVV SHR L SL+ +L+ G V L +PMFH N WC ++
Sbjct: 158 MAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAA 217
Query: 258 AALCGTSICLRQVTA-KAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVN 316
+ + ++ GVT P V ++ + E T L + +
Sbjct: 218 TLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADY-LESTGHRLKTLRRLV 276
Query: 317 TAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGV 376
G+A P S++ + G V YGL+ET K +SL E + +KA+ G+
Sbjct: 277 VGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGL 336
Query: 377 RFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANE-ETFANGWYHTG 435
+L V D + VP DGK +GE+ + G + GY N +A +G++ TG
Sbjct: 337 PIPL-VRLRVADEEGRP-VPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTG 394
Query: 436 DLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESP 495
D+ V + Y+EIKDR KD+I SGGE ISSV++EN + HP V EA+VVA +W E P
Sbjct: 395 DIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERP 454
Query: 496 CAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAY-WVPKSIVFGP-LPKTATGKIQKHVLR 553
A V + E+ E++ + A +P + VF +P+T+ GK K LR
Sbjct: 455 LAVVVPR------GEKPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALR 508
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509 |
| >gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 409 bits (1053), Expect = e-137
Identities = 191/552 (34%), Positives = 270/552 (48%), Gaps = 37/552 (6%)
Query: 15 ANYMALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGL--GCT 72
LT L A HP + +V R T+ + +R RLA+AL R++G+ G
Sbjct: 1 MQDYPLTIGRILRHGARKHPDKEAVYFDGRRTTYAELDERVNRLANAL--RALGVKKGDR 58
Query: 73 VAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAE 132
VA+ N EA+F VP GAVL+ +NIRL IA++L + V++VD E+ L
Sbjct: 59 VAVFDWNSHEYLEAYFAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLA 118
Query: 133 EALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQ 192
I+ + R +IV GD P + EYE+ L FD+
Sbjct: 119 ---AILPQLPTVRT----VIVEGDGPAAPLAPE------VGEYEELLAAASDTFDFPDI- 164
Query: 193 DEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWC 252
DE + A+ YTSGTT PKGVVLSHR +L SL+V ++ VYL +PMFH + W
Sbjct: 165 DENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKLSRDDVYLVIVPMFHVHAW- 223
Query: 253 YTWSLAAL--CGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLP 310
AL + R+ + + I VT F A P + ++ AP +
Sbjct: 224 -GLPYLALMAGAKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYFV-DFS 281
Query: 311 HVVHVNTAGAAPPPSVLHAMSQK-GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQAR 369
+ V GAA PP++L +K G + YG++ET V PE T+ R
Sbjct: 282 SLRLVIYGGAALPPALLREFKEKFGIDLVQGYGMTETSP--VVSVLPPEDQLPGQWTKRR 339
Query: 370 MKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFAN 429
G R + + ++D +P DG +GEI++ G +M+GY P+A ET
Sbjct: 340 ---SAG-RPLPGVEARIVDDDGD-ELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETIDG 394
Query: 430 GWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADE 489
GW HTGD+G D Y+ I DR KD+IISGGENI E+E+ +Y HPAV E +V+ DE
Sbjct: 395 GWLHTGDVGYIDEDGYLYITDRIKDVIISGGENIYPRELEDALYGHPAVAEVAVIGVPDE 454
Query: 490 RWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQ 548
+WGE P A V LKP A+++ F R ++ + +PK I F LP+T+ GKI
Sbjct: 455 KWGERPVAVVVLKPGATLD-----AKELRAFLRGRLAKFKLPKRIAFVDELPRTSVGKIL 509
Query: 549 KHVLRAKAKEMG 560
K VLR + E
Sbjct: 510 KRVLREQYAEGK 521
|
Length = 521 |
| >gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 397 bits (1022), Expect = e-133
Identities = 177/559 (31%), Positives = 251/559 (44%), Gaps = 44/559 (7%)
Query: 11 PKNAANYMALTPLWFLDRAATVHPTRTSVVHG--STRYTWLQTYQRCRRLASALCKRSIG 68
+ LT L+RAA +P R +++ R T+ + +R RLA+AL +
Sbjct: 2 NRLMRMTAELTLASLLERAARRNPDRPALIFLGRGGRLTYRELDRRANRLAAALQALGVK 61
Query: 69 LGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYF 128
G VAI+ PN P A AGAV +N RL +A++L + + V++ E+
Sbjct: 62 PGDRVAILLPNSPEFLIAFLAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFA 121
Query: 129 KLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDW 188
L E + P +L+V+ A R + E G
Sbjct: 122 ALLEAVAEA---------LPVVLVVLLVG--------DADDRLPITLEALAAEGPGPDAD 164
Query: 189 KPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSV--ALIWGMNEGAVYLWTLPMF 246
P D L YTSGTT PKGVVL+HR + + AL G+ V L LP+F
Sbjct: 165 ARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLF 224
Query: 247 HCNGWCYTWSLAALCGTSICL---RQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSE 303
H G L G ++ L + V I KY VT P L +++ P +
Sbjct: 225 HIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEK 284
Query: 304 DTILPLPHVVHVNTAGAAPPPSVLHAMSQKG--FHVTHTYGLSETYGPSTVCAWKPEWDS 361
D + V + GA PP +L ++ + YGL+ET T+
Sbjct: 285 DDDDLSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTIN-------- 336
Query: 362 LPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPK 421
PP+ G G+E + ++D + +P +GEI + G VMKGY P+
Sbjct: 337 -PPDDLLAKPGSVGRPLPGVE-VRIVDPDGGEVLP---GEVGEIWVRGPNVMKGYWNRPE 391
Query: 422 ANEETFAN-GWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLE 480
A E F GW TGDLG D Y+ I R KD+IISGGENI E+E ++ HPAV E
Sbjct: 392 ATAEAFDEDGWLRTGDLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVLAEHPAVAE 451
Query: 481 ASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVF-GPL 539
A+VV DERWGE A V LKP D + AE++ F R ++ Y VP+ +VF L
Sbjct: 452 AAVVGVPDERWGERVVAVVVLKPGGD---AELTAEELRAFLRKRLALYKVPRIVVFVDEL 508
Query: 540 PKTATGKIQKHVLRAKAKE 558
P+TA+GKI + LR + +
Sbjct: 509 PRTASGKIDRRALREEYRA 527
|
Length = 534 |
| >gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins | Back alignment and domain information |
|---|
Score = 309 bits (795), Expect = e-101
Identities = 130/357 (36%), Positives = 184/357 (51%), Gaps = 27/357 (7%)
Query: 202 YTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAALC 261
YTSGTT PKGV+L+HR +++ ++ G VYL P++H G + A
Sbjct: 8 YTSGTTGRPKGVMLTHRNLLANAVNALAGVDLSPGDVYLLAAPLYHAAGGLFLLPALAAG 67
Query: 262 GTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPS-EDTILP-LPHVVHVNTAG 319
GT + + + +AV I ++ VTH P + ++ P L L +++ G
Sbjct: 68 GTVVLMPKFDPEAVLDLIERHRVTHTFLVPTMFQRLLRLPDFARYDLSSLRLIIY----G 123
Query: 320 AAP-PPSVLHAMSQ-KGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVR 377
AAP P + AM + G YG++ET GP+T L PE R G
Sbjct: 124 AAPMPAELKRAMIEWFGPVFVQGYGMTET-GPTTTL--------LSPEDWLRKLGSVGRP 174
Query: 378 FIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDL 437
G+E + ++D + +P +GEIV+ G VM GY P+A E +GW HTGDL
Sbjct: 175 VPGVE-VRIVDEDGR-ELPP--GEVGEIVVRGPAVMAGYWNRPEATAEALRDGWLHTGDL 230
Query: 438 GVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCA 497
G D Y+ I DR KD+IISGGENI EVEN++ HPAV + +V+ DE WGE+ A
Sbjct: 231 GYLDEDGYLYIVDRKKDMIISGGENIYPAEVENVLLAHPAVADVAVIGVPDEEWGEAVVA 290
Query: 498 FVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLR 553
V L+P AE+++ FCR ++ Y VPKS+ F LP+ A+GKI K LR
Sbjct: 291 VVVLRPGA-----TLDAEELIAFCRERLAGYKVPKSVEFVDELPRNASGKILKRELR 342
|
Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342 |
| >gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 279 bits (715), Expect = 2e-89
Identities = 122/358 (34%), Positives = 172/358 (48%), Gaps = 25/358 (6%)
Query: 202 YTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAALC 261
YTSGTT PKG +L+HR S+A G+ EG L +P+FH G +
Sbjct: 9 YTSGTTGRPKGAMLTHRNVLNNGYSIARRLGLTEGDRTLVPVPLFHVFGLVLGVLASLTA 68
Query: 262 G-TSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGA 320
G T + + + A I + +T P + +++ P D L + + GA
Sbjct: 69 GATLVLMEKFDPGAALRLIERERITALHGVPTMFIALLEHPDFDK-FDLSSLRTGISGGA 127
Query: 321 APPPSVLHAMSQKGFHVTH---TYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVR 377
PP ++ + ++ F + YG++ET G T + P T R V+
Sbjct: 128 PVPPELVRRIREE-FPMAEITTGYGMTETSGVGTQ-TSGDDPYEDRPGTVGRPLPGVEVK 185
Query: 378 FIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEET-FANGWYHTGD 436
++D VP +GEI + G VMKGY +P+A E A+GW HTGD
Sbjct: 186 --------IVDPDGG-EVPPG--EVGEICVRGYSVMKGYYNDPEATAEAIDADGWLHTGD 234
Query: 437 LGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPC 496
LG D Y+ I R KD+II GGENI E+E + HPAV EA+VV DER GE
Sbjct: 235 LGYMDEDGYLRIVGRIKDMIIRGGENIYPAEIEEALLTHPAVAEAAVVGVPDERLGEVVA 294
Query: 497 AFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLR 553
AFV LKP E+++ FCR ++ + VP+ + F LP+TA+GKIQK LR
Sbjct: 295 AFVVLKP-----GATLTEEELIAFCRGRLARFKVPRYVRFVDELPRTASGKIQKFKLR 347
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347 |
| >gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme | Back alignment and domain information |
|---|
Score = 278 bits (712), Expect = 4e-88
Identities = 123/444 (27%), Positives = 183/444 (41%), Gaps = 39/444 (8%)
Query: 47 TWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNA 106
T+ + +R RLA+AL +G G VAI+ PN P A V AGA ++ L A
Sbjct: 1 TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60
Query: 107 PTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKY 166
+A++L S + V++ D E E L +
Sbjct: 61 ERLAYILEDSEAKVLITDDELLPKLLEVLLK------------------LLVLLALIIVG 102
Query: 167 ALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLS 226
G G + L G PP D + YTSGTT PKGV+L+HR ++
Sbjct: 103 DDGEGLDLLDDELLAGASAEPPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAG 162
Query: 227 VALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAALCGTSICLR--QVTAKAVYSAIAKYGV 284
+A +G+ G L LP+ + GT + + + + I KY V
Sbjct: 163 LAERFGLTPGDRVLLLLPLHFDGSVWEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKYKV 222
Query: 285 THFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQKGFHVT--HTYG 342
T P +L ++ AP E+ L + V + G PP +L + ++ V + YG
Sbjct: 223 TVLYGVPTLLRLLLKAP-EEKKYDLSSLRLVLSGGEPLPPELLRRLRERFGGVPLVNGYG 281
Query: 343 LSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTI 402
+ET +T G G+E + V+D + PVP +
Sbjct: 282 PTETTVVATANLPGDPEVKPGS---------IGRPLPGVE-VKVLDEEGE-PVPPG--EV 328
Query: 403 GEIVMSGNVVMKGYLKNPKANEETF-ANGW--YHTGDLGVKHPDNYIEIKDRSKDIIISG 459
GE+ + G V +GYL +P+ E F +GW Y TGDLG D Y+EI R D +
Sbjct: 329 GELCIRGPGVARGYLNDPELTAERFVEDGWGMYRTGDLGRWDEDGYLEILGRKDDQVKIR 388
Query: 460 GENISSVEVENMMYLHPAVLEASV 483
GE I E+E ++ HP V EA+V
Sbjct: 389 GERIEPGEIEAVLLEHPGVAEAAV 412
|
Length = 412 |
| >gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD | Back alignment and domain information |
|---|
Score = 274 bits (703), Expect = 5e-86
Identities = 160/546 (29%), Positives = 234/546 (42%), Gaps = 98/546 (17%)
Query: 25 FLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIY 84
L+RAA P R ++ + T+ + + R A+ L + + G VA++ PN P
Sbjct: 4 LLERAARRFPDRPALTFFGRKLTYAELDELSDRFAAYLQQLGVKKGDRVALMLPNCPQFP 63
Query: 85 EAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNG 144
A+FG+ AGAV+ VN + L S + V++V + E+AL
Sbjct: 64 IAYFGILKAGAVVVPVNPLYTPRELEHQLNDSGAKVLIVAISF----EDALASGA----- 114
Query: 145 RFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTS 204
P L V P DL AV LQ YT
Sbjct: 115 ---PLPLPVE----LSPDDL-------AV-----LQ---------------------YTG 134
Query: 205 GTTASPKGVVLSHRG--AYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAALCG 262
GTT PKG +L+HR A + ++ + +L LP+FH + ++ L G
Sbjct: 135 GTTGVPKGAMLTHRNLVANVQQIAAWVKDLREGEDRFLTALPLFHI----FGLTVNMLLG 190
Query: 263 -----TSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNT 317
T++ + V I +Y T F P + N+++N P E + +
Sbjct: 191 LRLGATNVLVPNFRPINVLKEIKRYRFTIFPGVPTLYNALLNHP-EFKKYDFSSLRLCIS 249
Query: 318 AGAAPPPSVLHAMSQK-GFHVTHTYGLSETYGPSTVCAWKPEWDS-------LP-PETQA 368
GA P V +K G + YGL+ET S V P LP P T+
Sbjct: 250 GGAPLPVEVAERFEEKTGAPLVEGYGLTET---SPVTTVNPLDGERKPGSIGLPLPGTEV 306
Query: 369 RMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFA 428
+ ++D +P G+ +GE+V+ G VMKGY P+ E
Sbjct: 307 K----------------IVDDEGN-ELP-PGE-VGELVVRGPQVMKGYWNRPEETAEVLT 347
Query: 429 NGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARAD 488
+GW TGD+G D Y I DR KD+II GG N+ E+E ++Y HPAVLEA+VV D
Sbjct: 348 DGWLRTGDIGYMDEDGYFYIVDRKKDMIIVGGFNVYPREIEEVLYSHPAVLEAAVVGVPD 407
Query: 489 ERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKI 547
GE+ AFV LK + E+++ FCR ++ AY VP+ + F LPK+A GKI
Sbjct: 408 PYRGEAVKAFVVLKEGASLT-----EEELIAFCRERLAAYKVPRQVEFRDELPKSAVGKI 462
Query: 548 QKHVLR 553
+ LR
Sbjct: 463 LRRELR 468
|
This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468 |
| >gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 274 bits (704), Expect = 1e-85
Identities = 172/546 (31%), Positives = 243/546 (44%), Gaps = 59/546 (10%)
Query: 26 LDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYE 85
L RAA + + V G R T+ + R RR A+AL IG G VAI APN P
Sbjct: 11 LARAARRFGDKEAYVFGDQRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVI 70
Query: 86 AHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGR 145
A G AGAV+ +N R A A++L + + V + + A
Sbjct: 71 AALGALKAGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATT--------- 121
Query: 146 FKPPLL---IVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGY 202
+ P L ++ E DP K + FL GDP + + L +
Sbjct: 122 -RLPALEHVVICETEEDDPHTEKM------KTFTDFLAAGDPAERAPEVDPDDVADIL-F 173
Query: 203 TSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWS-LAALC 261
TSGTT PKG +L+HR + A G+ EG YL P FH + Y A L
Sbjct: 174 TSGTTGRPKGAMLTHRQLLSNAADWAEYLGLTEGDRYLAANPFFHV--FGYKAGVNAPLM 231
Query: 262 --GTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAP---SEDTILPLPHVVHVN 316
T + L V+ I +T P + NS++ P +ED L +
Sbjct: 232 RGATILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSAED----LSSLRLAV 287
Query: 317 TAGAAPPPSVLHAMSQK-GF-HVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQ 374
T A+ P ++L + G V YGLSE G +T + + A
Sbjct: 288 TGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTFN---------RLDDDRKTVAGT 338
Query: 375 -GVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETF-ANGWY 432
G G+E +++ ++ + +GE+++ G VMKGY +P+A A+GW
Sbjct: 339 IGTAIAGVE-NKIVNELGEEVPVGE---VGELLVRGPNVMKGYYDDPEATAAAIDADGWL 394
Query: 433 HTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWG 492
HTGDLG + Y+ I DR KD+ I GG N+ EVE ++Y HPAV EA+V+ DER G
Sbjct: 395 HTGDLGRLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLG 454
Query: 493 ESPCAFVTLKP--EVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVF-GPLPKTATGKIQK 549
E A+V LKP E+ E+++ +CR + Y VP+SI F LPK ATGK+ K
Sbjct: 455 EVGKAYVVLKPGAELT-------EEELIAYCREHLAKYKVPRSIEFLDELPKNATGKVLK 507
Query: 550 HVLRAK 555
LR K
Sbjct: 508 RALREK 513
|
Length = 513 |
| >gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 272 bits (697), Expect = 2e-84
Identities = 178/547 (32%), Positives = 273/547 (49%), Gaps = 42/547 (7%)
Query: 26 LDRAATVHPTR---TSVVHGS-TRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIP 81
+D AA +H R T V G R T+ Q + R +++ AL + I LG VA IA N
Sbjct: 16 IDHAARIHGNREVVTRSVEGPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTW 75
Query: 82 AIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEE- 140
EA +G+ GA+ + VN RL IA+++ H+ V++ D + + E KI ++
Sbjct: 76 RHLEAWYGIMGIGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILE---KIADKL 132
Query: 141 KSNGRFKPPLLIVIGDESCDPKD-LKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIA 199
S R+ +V+ D + P+ LK AV YE+++ D F WK DE +
Sbjct: 133 PSVERY-----VVLTDAAHMPQTTLK-----NAVAYEEWIAEADGDFAWKT-FDENTAAG 181
Query: 200 LGYTSGTTASPKGVVLSHRGAYLMSLSV----ALIWGMNEGAVYLWTLPMFHCNGWCYTW 255
+ YTSGTT PKGV+ SHR L +L AL G + L +P+FH N W +
Sbjct: 182 MCYTSGTTGDPKGVLYSHRSNVLHALMANNGDAL--GTSAADTMLPVVPLFHANSWGIAF 239
Query: 256 SLAALCGTSICL--RQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVV 313
S ++ GT + + ++ +VY + VT P V ++ E L LPH+
Sbjct: 240 SAPSM-GTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQY-MEKEGLKLPHLK 297
Query: 314 HVNTAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKAR 373
V G+A P S++ A G V H +G++E T+ A KP + LP + + + +
Sbjct: 298 MVVCGGSAMPRSMIKAFEDMGVEVRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQK 357
Query: 374 QGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETF-ANGWY 432
QG G+E + + D ++ +P DGKT G + + G V Y + + E +G++
Sbjct: 358 QGYPPFGVE-MKITDDAGKE-LPWDGKTFGRLKVRGPAVAAAYYR---VDGEILDDDGFF 412
Query: 433 HTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWG 492
TGD+ Y+ I DRSKD+I SGGE ISS+++EN+ HP V EA+V+ +W
Sbjct: 413 DTGDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENLAVGHPKVAEAAVIGVYHPKWD 472
Query: 493 ESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHV 551
E P V LKP + E+I+K+ K+ +W+P + F +P TATGKI K
Sbjct: 473 ERPLLIVQLKPGETATR-----EEILKYMDGKIAKWWMPDDVAFVDAIPHTATGKILKTA 527
Query: 552 LRAKAKE 558
LR + K+
Sbjct: 528 LREQFKD 534
|
Length = 542 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 270 bits (692), Expect = 8e-84
Identities = 154/555 (27%), Positives = 242/555 (43%), Gaps = 72/555 (12%)
Query: 25 FLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIY 84
L R+A +P +T++V G +T+ + R+A+AL + G VA + N A
Sbjct: 16 ILRRSARRYPDKTALVFGDRSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYA 75
Query: 85 EAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNG 144
AGAV VN L +A++L HS + +VD AE AL ++ +
Sbjct: 76 LLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLPVDTLI 135
Query: 145 RFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTS 204
L++ G E+ G +++ + + G D+ + YTS
Sbjct: 136 L----SLVLGGREAPG----------GWLDFADWAEAGSVAEPDVELADD-DLAQILYTS 180
Query: 205 GTTASPKGVVLSHRG--AYLMSLSVALIWGMNEGAVYLWTLPMFHCNGW-CYTWSLAALC 261
GT + PKG +L+HR A +S VA M+ + L LP++HC + +
Sbjct: 181 GTESLPKGAMLTHRALIAEYVSCIVAG--DMSADDIPLHALPLYHCAQLDVFLGPYLYVG 238
Query: 262 GTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDT--------------IL 307
T++ L + + I +T F A P V S++ P DT I+
Sbjct: 239 ATNVILDAPDPELILRTIEAERITSFFAPPTVWISLLRHPDFDTRDLSSLRKGYYGASIM 298
Query: 308 PLPHVVHVNTAGAAPPPSVLHAMSQK--GFHVTHTYGLSETYGP-STVCAWKPEWDSLPP 364
P+ VL + ++ G + YG +E P +TV L P
Sbjct: 299 PVE---------------VLKELRERLPGLRFYNCYGQTEI-APLATV---------LGP 333
Query: 365 ETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANE 424
E R G + +E V+D V +GEIV +M GY +P+
Sbjct: 334 EEHLRRPGSAGRPVLNVE-TRVVDDD-GNDVAPG--EVGEIVHRSPQLMLGYWDDPEKTA 389
Query: 425 ETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVV 484
E F GW+H+GDLGV + YI + DR KD+I +GGEN++S EVE +Y HPAV E +V+
Sbjct: 390 EAFRGGWFHSGDLGVMDEEGYITVVDRKKDMIKTGGENVASREVEEALYTHPAVAEVAVI 449
Query: 485 ARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTA 543
D +W E+ A V K + ++++ CRA++ + VPK ++F LP+
Sbjct: 450 GLPDPKWIEAVTAVVVPKAGATVT-----EDELIAHCRARLAGFKVPKRVIFVDELPRNP 504
Query: 544 TGKIQKHVLRAKAKE 558
+GKI K LR +
Sbjct: 505 SGKILKRELRERYAG 519
|
Length = 523 |
| >gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I | Back alignment and domain information |
|---|
Score = 248 bits (636), Expect = 8e-78
Identities = 125/357 (35%), Positives = 174/357 (48%), Gaps = 31/357 (8%)
Query: 200 LGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNG---WCYTWS 256
+ YTSGTT PKGVVLSHR + ++A G+ EG V L LP+FH G
Sbjct: 5 ILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGLTEGDVLLSVLPLFHVVGGGSGLLG-- 62
Query: 257 LAALCGTSICLR--QVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVH 314
A L G ++ L + I +Y VT P + +++ A + L +
Sbjct: 63 -ALLAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLYDALAKAAEDRGY-DLSSLRL 120
Query: 315 VNTAGAAPPPSVL-HAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKAR 373
+ + G P +L + G + YGL+ET S V + P+ + P T
Sbjct: 121 LISGGEPLSPELLERFEERPGAPILEGYGLTET---SVVTSTNPDSELKKPGTV------ 171
Query: 374 QGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKN-PKANEETFANGWY 432
G G+E + V+D + P +GE+V+ G VMKGY N P+ +GWY
Sbjct: 172 -GRPVPGVE-VRVVDEEGK---PLPPGEVGELVVRGPWVMKGYWNNPPETTAAATEDGWY 226
Query: 433 HTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWG 492
TGDLG + Y+ I RSKD+I GGEN+ EVE+++ HPAV EA+VV DE G
Sbjct: 227 RTGDLGYLDEEGYLYITGRSKDLIKVGGENVYPAEVESVLLQHPAVAEAAVVGVPDEDRG 286
Query: 493 ESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQ 548
E AFV L+P D LAE++ R ++ Y VP+ I F LPKTA+GKI
Sbjct: 287 ERIVAFVVLRPGAD-----ALAEELKAHLRERLAPYKVPRVIEFVDELPKTASGKID 338
|
This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338 |
| >gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 249 bits (637), Expect = 1e-75
Identities = 161/522 (30%), Positives = 256/522 (49%), Gaps = 35/522 (6%)
Query: 45 RYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRL 104
RYT+ +R ++LA AL + G V +A N EA++GV +GAV + +N RL
Sbjct: 39 RYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGSGAVCHTINPRL 98
Query: 105 NAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDL 164
IA+++ H+ ++ D + L + + + N + + + D + P
Sbjct: 99 FPEQIAYIVNHAEDRYVLFDLTFLPLVD---ALAPQCPNVKG----WVAMTDAAHLPAGS 151
Query: 165 KYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMS 224
L YE + D +DW P DE Q+ +L YTSGTT +PKG + SHR L +
Sbjct: 152 TPLLC-----YETLVGAQDGDYDW-PRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHA 205
Query: 225 LSVALIWGMNEGA--VYLWTLPMFHCNGWCYTWSLAALCGTSICL--RQVTAKAVYSAIA 280
AL M A L +PMFH N W +S A L G + L + K++Y I
Sbjct: 206 YGAALPDAMGLSARDAVLPVVPMFHVNAWGLPYS-APLTGAKLVLPGPDLDGKSLYELIE 264
Query: 281 KYGVTHFCAAPVVLNSIVNAPSEDTIL--PLPHVVHVNTAGAAPPPSVLHAMSQK-GFHV 337
VT P V ++N E + L V G+A PP+++ + G V
Sbjct: 265 AERVTFSAGVPTVWLGLLNHMREAGLRFSTLRRTV---IGGSACPPAMIRTFEDEYGVEV 321
Query: 338 THTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPA 397
H +G++E T+C K + LP + Q ++ +QG G++ + ++ + +P
Sbjct: 322 IHAWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGVD-MKIVGD-DGRELPW 379
Query: 398 DGKTIGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIII 457
DGK G++ + G V+ Y + + +GW+ TGD+ D +++I DRSKD+I
Sbjct: 380 DGKAFGDLQVRGPWVIDRYFRG---DASPLVDGWFPTGDVATIDADGFMQITDRSKDVIK 436
Query: 458 SGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDI 517
SGGE ISS+++EN+ HPAV EA+ +A A +W E P V +P + + E+ LA
Sbjct: 437 SGGEWISSIDIENVAVAHPAVAEAACIACAHPKWDERPLLVVVKRPGAEVTREELLA--- 493
Query: 518 MKFCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLRAKAKE 558
F K+ +W+P +VF +P TATGK+QK LR + ++
Sbjct: 494 --FYEGKVAKWWIPDDVVFVDAIPHTATGKLQKLKLREQFRD 533
|
Length = 539 |
| >gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase) | Back alignment and domain information |
|---|
Score = 235 bits (602), Expect = 2e-71
Identities = 110/359 (30%), Positives = 158/359 (44%), Gaps = 23/359 (6%)
Query: 200 LGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAA 259
L YTSGTT PKGV+ +H S G+ V L P+ H G+ Y L
Sbjct: 98 LLYTSGTTGEPKGVMHTHNTLLAEVRSYVERLGLTPDDVVLMPSPLAHITGFLYGLELPL 157
Query: 260 LCGTSICLRQV-TAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTA 318
L G ++ L+ I ++GVT A L ++ A + LP +
Sbjct: 158 LLGATVVLQDRWDPARALELIREHGVTFTMGATPFLADLLAAA-DAAGPDLPSLRVFLCG 216
Query: 319 GAAPPPSVLHAMSQK-GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVR 377
GA P + ++ G V YG++E V P + + A G
Sbjct: 217 GAPVPRELARRAAEALGAKVVRAYGMTEV---PLVTV------GTPDDPDDKRAATDGRP 267
Query: 378 FIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDL 437
G+E + ++D VP GE+ + G + GYL P E +GW+ TGDL
Sbjct: 268 VPGVE-VRIVDDDGN-DVPPG--EEGELQVRGPQLFLGYLDPPDNTEAFTDDGWFRTGDL 323
Query: 438 GVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCA 497
G D Y+ I R KDIII GGENIS+ E+E+++ HPAV E +VVA DER GE CA
Sbjct: 324 GRLDADGYLRITGRKKDIIIRGGENISAREIEDLLLRHPAVAEVAVVAMPDERLGERVCA 383
Query: 498 FVTLKPEVDKSNEQQLAEDIMKFCRAK-MPAYWVPKSIVFGP-LPKTATGKIQKHVLRA 554
V P + ++ + A+ + P+ + LP+T +GK+QK LR
Sbjct: 384 VVVPAPGASLT-----LAELTEHLAAQGLAKQKWPERLEVVDALPRTPSGKVQKFELRE 437
|
Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 228 bits (584), Expect = 4e-69
Identities = 121/366 (33%), Positives = 175/366 (47%), Gaps = 40/366 (10%)
Query: 199 ALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLA 258
A+ YTSGTT PKGV+L+H + A + G+ V L LP+FH N Y+ A
Sbjct: 85 AILYTSGTTGPPKGVLLTHAQLLFAARLAARLLGLRPDDVLLTPLPLFHINAQAYSVYAA 144
Query: 259 ALCGTSICL-RQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLP----HVV 313
L G ++ L + +A + + K+G T F + ++ P P P H +
Sbjct: 145 LLVGATLVLLPRFSASRFWDQVRKHGATVFNLLGAMAAILMKQP------PSPDDRDHPL 198
Query: 314 HVNTAGAAPPPSVLHAMSQK--GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMK 371
AP P+ + ++ G + YG++ET V P D PP + R
Sbjct: 199 RF--VFGAPLPAAIWPAFEERFGVKLVEGYGMTET----GVPIIAPG-DPAPPGSCGR-- 249
Query: 372 ARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGN---VVMKGYLKNPKANEETFA 428
R GV ++ ++D + VP +GE+V+ + KGY P+A + +
Sbjct: 250 PRPGV------EVRIVDEDGR-EVPPG--EVGELVVRPRRPWAMFKGYYGMPEATAKAWR 300
Query: 429 NGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARAD 488
NGW+HTGD G + D ++ DR KD I GENISS EVE + HPAV EA+VVA
Sbjct: 301 NGWFHTGDRGRRDEDGFLYFVDRKKDAIRRRGENISSYEVEAAILAHPAVAEAAVVAVPS 360
Query: 489 ERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSI-VFGPLPKTATGKI 547
E + A V L+P E E +++FCR ++P + VP+ I LPKT T KI
Sbjct: 361 ELGEDEVKAVVVLRP-----GETLDPEALLEFCRDRLPYFMVPRYIEFVDELPKTPTEKI 415
Query: 548 QKHVLR 553
QK LR
Sbjct: 416 QKAELR 421
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 227 bits (581), Expect = 6e-68
Identities = 149/563 (26%), Positives = 231/563 (41%), Gaps = 101/563 (17%)
Query: 18 MALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIA 77
M P W RA + P RT++ + T+++ ++ +A L + G VA++
Sbjct: 1 METMPNWLKQRA-FLTPDRTAIEFEEKKVTFMELHEAVVSVAGKLAALGVKKGDRVALLM 59
Query: 78 PNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYF-KLAEEALK 136
N + + GAV +N RL+ + + L + ++ D ++ KL
Sbjct: 60 KNGMEMILVIHALQQLGAVAVLLNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGISV 119
Query: 137 IMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQ 196
E NG + + Q ++ DE
Sbjct: 120 KFAELMNGPKEEA---------------------------------EIQEEF--DLDEVA 144
Query: 197 SIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWS 256
+I YTSGTT PKGV+ ++ + ++ AL G+ E +L +P+FH
Sbjct: 145 TIM--YTSGTTGKPKGVIQTYGNHWWSAVGSALNLGLTEDDCWLAAVPIFH--------- 193
Query: 257 LAALCGTSICLRQVT------------AKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSED 304
+ G SI +R V A+ + + GVT +L ++ E
Sbjct: 194 ---ISGLSILMRSVIYGMRVVLVEKFDAEKINKLLQTGGVTIISVVSTMLQRLLERLGEG 250
Query: 305 TILPLPHVVHVNTAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSL-- 362
T P + G P +L +KG V +YG++ET S + PE D+L
Sbjct: 251 T-YP-SSFRCMLLGGGPAPKPLLEQCKEKGIPVYQSYGMTET--ASQIVTLSPE-DALTK 305
Query: 363 -----PPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYL 417
P +K + D P GEIV+ G V KGYL
Sbjct: 306 LGSAGKPLFPCELKIEK-------------DGVVVPP-----FEEGEIVVKGPNVTKGYL 347
Query: 418 KNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPA 477
A ETF +GW+ TGD+G + ++ + DR D+IISGGENI E+E ++ HP
Sbjct: 348 NREDATRETFQDGWFKTGDIGYLDEEGFLYVLDRRSDLIISGGENIYPAEIEEVLLSHPG 407
Query: 478 VLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVF- 536
V EA VV D++WG+ P AFV EV + E++ FC K+ Y VPK F
Sbjct: 408 VAEAGVVGVPDDKWGQVPVAFVVKSGEVTE-------EELRHFCEEKLAKYKVPKRFYFV 460
Query: 537 GPLPKTATGKIQKHVLRAKAKEM 559
LP+ A+GK+ +H L+ +EM
Sbjct: 461 EELPRNASGKLLRHELKQLVEEM 483
|
Length = 483 |
| >gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis | Back alignment and domain information |
|---|
Score = 222 bits (568), Expect = 1e-67
Identities = 121/361 (33%), Positives = 181/361 (50%), Gaps = 32/361 (8%)
Query: 202 YTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAAL- 260
+TSGTT PKGV L+H+ + ++A + L +P+FH +G + LA L
Sbjct: 9 HTSGTTGRPKGVPLTHKNLLASARNIAKSHKLTPSDRCLNVMPLFHIHGLIVS-LLATLL 67
Query: 261 -CGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAG 319
G+ +C + +A + IAKY VT + A P + ++ + P P + + +A
Sbjct: 68 AGGSVVCPPKFSASKFWDDIAKYRVTWYSAVPTIHQILLKTAKPNPGKPPPRLRFIRSAS 127
Query: 320 AAPPPSVLHAMSQKGFH--VTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVR 377
A PP+VL + +K F V YG++E + LPP + + G
Sbjct: 128 APLPPAVLDRL-EKRFGVPVLEAYGMTEAAHQIAS-------NPLPPLVR-----KPGS- 173
Query: 378 FIGL---EKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANGWYHT 434
+G ++ ++D +P+P GEIV+ G V GYL NP+AN E F +GW+ T
Sbjct: 174 -VGRPAGVEVAILD-DDGRPLPPG--QEGEIVIRGPNVTAGYLNNPEANREAFRDGWFRT 229
Query: 435 GDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGES 494
GDLG D Y+ + R K++I GGE IS EVE ++ HPAV EA V DE +GE
Sbjct: 230 GDLGYLDEDGYLFLTGRIKELINRGGEKISPREVEEVLLRHPAVAEAVVFGVPDELYGEE 289
Query: 495 PCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLR 553
A V L+ + + E++ F R ++ A+ VPK I+F LPK ATGKIQ+ L
Sbjct: 290 VAAAVVLRAD-----SKVTIEELRDFARKRLAAFKVPKKILFVDALPKGATGKIQRRKLA 344
Query: 554 A 554
Sbjct: 345 E 345
|
FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345 |
| >gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 217 bits (556), Expect = 6e-64
Identities = 131/530 (24%), Positives = 207/530 (39%), Gaps = 55/530 (10%)
Query: 41 HGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAV 100
T+ + RLA+AL G VAI PN P A GA+ V
Sbjct: 36 GLFRELTYGDLRREVARLANALKDLGGVKGDRVAIYMPNSPEAVIALLATARIGAIPAVV 95
Query: 101 NIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCD 160
+ L+A +A + V++ D F K + + ++V+
Sbjct: 96 SPGLSAEAVADRIADLGPKVLIADDGTF----RNGKEIALLEDADAVLSSVVVVPRLGLW 151
Query: 161 PKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGA 220
+ E+E L DP + L YTSGTT PKG+V SH G
Sbjct: 152 YDEAVEKAS-EKFEFEP-LPADDP-------------LFLLYTSGTTGKPKGIVHSHGG- 195
Query: 221 YLM--SLSVALIWGMNEGAVYLWTLPMFH--CNGWCYTWSLAALCGTSICL----RQVTA 272
YL+ L+ + G + + + LA G + L +
Sbjct: 196 YLVEHRLTAKFHGDLLPGDRFWNSSDPGWIYGLWYSVFSPLA--SGATTVLYDGRPFYSP 253
Query: 273 KAVYSAIAKYGVTHFCAAPVVLNSIVNAPS-EDTILPLPHVVHVNTAGAAPPPSVLHAMS 331
+ ++ A+ KY VT F +P L ++ E L V+ + P + S
Sbjct: 254 ERLWEALEKYKVTIFGTSPTFLRRLMKLGLGEPYDLSSLRVLG-SAGEPLNPEAFEWFYS 312
Query: 332 QKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRT 391
G + YG +ET + + P + G+ G + +D
Sbjct: 313 ALGVWILDIYGQTETGMG---------FIAGRPPVK---NGSSGLPLPGYA-VRRVD-DE 358
Query: 392 QQPVPADGKTIGEIVMSG--NVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIK 449
PVP GE+V+ + Y +P+ +E + WY TGD + D Y +
Sbjct: 359 GNPVPPGV---GELVVRLPWPGMALTYWNDPERYKEAYFGRWYRTGDWAERDEDGYFWLH 415
Query: 450 DRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSN 509
RS D+I G+ I +E+E+++ HPAV EA+VV D G+ AFV L V+ +
Sbjct: 416 GRSDDVIKVSGKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVVLAAGVEPN- 474
Query: 510 EQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKE 558
+LAE+I + + + +P+ I F LPKTA+GKIQ+ +LR +
Sbjct: 475 --ELAEEIRRHVARNIGPHAIPRKIRFVDELPKTASGKIQRRLLRKILHK 522
|
Length = 528 |
| >gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 215 bits (550), Expect = 6e-63
Identities = 166/567 (29%), Positives = 247/567 (43%), Gaps = 84/567 (14%)
Query: 25 FLDRAATVHPTRTSVV-----HGS-TRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAP 78
LD P +T+V G+ R+T+ + R+A L + +G G V+ P
Sbjct: 29 DLDACVASCPDKTAVTAVRLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLP 88
Query: 79 N---IPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEAL 135
N +Y A + GAVLN + ++F+L H+ S V++V + + A
Sbjct: 89 NWWEFTVLYLACSRI---GAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAA- 144
Query: 136 KIMEEKSNGRFKPPL-----LIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKP 190
M R +P L ++V+G G GA +E L T P ++ +P
Sbjct: 145 --MAR----RLRPELPALRHVVVVG-------------GDGADSFEALLIT--PAWEQEP 183
Query: 191 ------------PQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAV 238
P D Q I YTSGTT PKGV+ + + A G+ V
Sbjct: 184 DAPAILARLRPGPDDVTQLI---YTSGTTGEPKGVMHTANTLMANIVPYAERLGLGADDV 240
Query: 239 YLWTLPMFHCNGWCYTWSLAALCGTSICLRQV--TAKAVYSAIAKYGVTHFCAAPVVLNS 296
L PM H G+ Y + + G + L+ + A+A I GVT A+ L
Sbjct: 241 ILMASPMAHQTGFMYGLMMPVMLGATAVLQDIWDPARAA-ELIRTEGVTFTMASTPFLTD 299
Query: 297 IVNAPSEDTILPLPHVVHVNTAGAA-PPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAW 355
+ A E P+ + AGA P V A + G + +G++E +
Sbjct: 300 LTRAVKESG-RPVSSLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAVTLTK-- 356
Query: 356 KPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKG 415
+ R G G+E + V+D P+PA IG + + G G
Sbjct: 357 -------LDDPDERASTTDGCPLPGVE-VRVVDA-DGAPLPAG--QIGRLQVRGCSNFGG 405
Query: 416 YLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLH 475
YLK P+ N T A+GW+ TGDL D YI I RSKD+II GGENI VE+E ++Y H
Sbjct: 406 YLKRPQLNG-TDADGWFDTGDLARIDADGYIRISGRSKDVIIRGGENIPVVEIEALLYRH 464
Query: 476 PAVLEASVVARADERWGESPCAFVTLKP--EVDKSNEQQLAEDIMKFCRAKMPA--YWVP 531
PA+ + ++VA DER GE CAFV +P +D E++++F +A+ A Y
Sbjct: 465 PAIAQVAIVAYPDERLGERACAFVVPRPGQSLDF-------EEMVEFLKAQKVAKQYIPE 517
Query: 532 KSIVFGPLPKTATGKIQKHVLRAKAKE 558
+ +V LP+T +GKIQK LR +
Sbjct: 518 RLVVRDALPRTPSGKIQKFRLREMLRG 544
|
Length = 547 |
| >gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 214 bits (547), Expect = 2e-62
Identities = 151/541 (27%), Positives = 221/541 (40%), Gaps = 53/541 (9%)
Query: 26 LDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYE 85
L R A + P ++ TW + R LA AL +R +G G V I+ N E
Sbjct: 23 LARHALMQPDAPALRFLGNTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVE 82
Query: 86 AHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGR 145
+ M GA+ VN RL P IAFL+ + V++ + +A I+ S
Sbjct: 83 SVLAANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATAVRDIVPLLS--- 139
Query: 146 FKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQD--EWQSIALGYT 203
++V G S D + YE L P P D + YT
Sbjct: 140 ----TVVVAGGSSDD----------SVLGYEDLLAEAGPAH---APVDIPNDSPALIMYT 182
Query: 204 SGTTASPKGVVLSHRGAYLMSLSVALIWGM---NEGAVYLWTLPMFHCNGWCYTWSLAAL 260
SGTT PKG VL+H A L ++ + V +P+FH G L
Sbjct: 183 SGTTGRPKGAVLTH--ANLTGQAMTCLRTNGADINSDVGFVGVPLFHIAGIGSMLPGLLL 240
Query: 261 CGTSIC--LRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTA 318
++ L + + VT P ++ P + V +
Sbjct: 241 GAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQAR---PRDLALRVLSW 297
Query: 319 GAAP-PPSVLHAMSQK--GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQG 375
GAAP ++L M+ + +G +E P T C L E R G
Sbjct: 298 GAAPASDTLLRQMAATFPEAQILAAFGQTEM-SPVT-CM-------LLGEDAIRKLGSVG 348
Query: 376 VRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANGWYHTG 435
+ I V+D +GEIV +M GY NP+A E FA GW+H+G
Sbjct: 349 -KVIPTVAARVVDENMNDVPVG---EVGEIVYRAPTLMSGYWNNPEATAEAFAGGWFHSG 404
Query: 436 DLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESP 495
DL + + Y+ + DR KD+IISGGENI EVEN++ HP ++E +V+ RADE+WGE P
Sbjct: 405 DLVRQDEEGYVWVVDRKKDMIISGGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVP 464
Query: 496 CAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRA 554
A ++ + + LAE F ++ Y PK++ LP+ GK+ K LR
Sbjct: 465 VAVAAVRNDDAALTLEDLAE----FLTDRLARYKHPKALEIVDALPRNPAGKVLKTELRE 520
Query: 555 K 555
+
Sbjct: 521 R 521
|
Length = 542 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 209 bits (535), Expect = 7e-62
Identities = 124/371 (33%), Positives = 175/371 (47%), Gaps = 45/371 (12%)
Query: 199 ALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLA 258
+ YTSGTT PKG + +HR + + A G+ +V L LP+FH G + +
Sbjct: 88 VIPYTSGTTGLPKGCMHTHRTVLATAAASAAWSGLTPDSVLLAFLPLFHVAGMQGSMNAP 147
Query: 259 ALCGTSICL-----RQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVV 313
G ++ L R+ A+A I +Y VTH+ ++ ++ P L +
Sbjct: 148 IYTGATLVLLTRWDREAAARA----IERYRVTHWTNIVTMVVDLLAHPRFAD-YDLSSLK 202
Query: 314 HVNTAGAAPPPSV---LHAMSQKGFHVTHTYGLSETYGPSTVCAW---KPEWDSLP-PET 366
V GAA PP+V L A++ G YGL+ET+ + KP+ +P T
Sbjct: 203 VVGGGGAALPPAVAERLKALT--GLLYEEGYGLTETHTCTHFNPPDRPKPQCLGIPVFGT 260
Query: 367 QARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEET 426
AR VID T + +P G GEIV+ G V KGY P+A E+
Sbjct: 261 DAR----------------VIDPETGEELP-PG-EEGEIVVRGPQVFKGYWNRPEATAES 302
Query: 427 F----ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEAS 482
F ++ TGDLG + Y DR K +I G + EVE ++Y HPAVLE
Sbjct: 303 FIELDGKRFFRTGDLGYIDEEGYFFFLDRVKRMINVSGYKVWPAEVEALLYQHPAVLEVC 362
Query: 483 VVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVF-GPLPK 541
V+ R D R GE AFV LKP+ EDI+++CR +M AY P+ I F LPK
Sbjct: 363 VIGRPDPRRGEVVKAFVVLKPDYRGK---VTEEDIIEWCRERMAAYKYPRIIEFVDELPK 419
Query: 542 TATGKIQKHVL 552
TA+GK+ +L
Sbjct: 420 TASGKVLWRLL 430
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 210 bits (535), Expect = 3e-61
Identities = 142/539 (26%), Positives = 235/539 (43%), Gaps = 51/539 (9%)
Query: 24 WFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKR-SIGLGCTVAIIAPNIPA 82
+++++ A +HP R +++ T+ Q ++ ++A+ L ++ G +AI++ N
Sbjct: 6 YWIEKRAYLHPDRIAIITEEEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLE 65
Query: 83 IYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKS 142
F + + +NIRL + F L S + V+ V++ + +A M++ S
Sbjct: 66 YIVLLFAIAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALS----MQKVS 121
Query: 143 NGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGY 202
+ + I K+++ V ++E S + Y
Sbjct: 122 Y--VQRVISIT------SLKEIEDRKIDNFV-----------------EKNESASFIICY 156
Query: 203 TSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGW-CYTWSLAALC 261
TSGTT PKG VL+ + +L+ + + LP+FH G + +
Sbjct: 157 TSGTTGKPKGAVLTQENMFWNALNNTFAIDLTMHDRSIVLLPLFHIGGIGLFAFPTLFAG 216
Query: 262 GTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAA 321
G I R+ S I K+ VT P + +++N +T L V GA
Sbjct: 217 GVIIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQALINCSKFETT-NLQSVRWFYNGGAP 275
Query: 322 PPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGL 381
P ++ +GF +G++ET P+ + E AR K + +
Sbjct: 276 CPEELMREFIDRGFLFGQGFGMTET-SPTVF---------MLSEEDARRKVGSIGKPVLF 325
Query: 382 EKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKH 441
++ID + V +GE+++ G VMK Y P A EET +GW TGDL
Sbjct: 326 CDYELIDENKNK-VEVGE--VGELLIRGPNVMKEYWNRPDATEETIQDGWLCTGDLARVD 382
Query: 442 PDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTL 501
D ++ I R K++IISGGENI +EVE ++ V E +VV R +WGE P AF+
Sbjct: 383 EDGFVYIVGRKKEMIISGGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVK 442
Query: 502 KPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLRAKAKEM 559
K + + +D+++ CR + Y +PK IVF LPK ATGKIQK L + K
Sbjct: 443 KS-----SSVLIEKDVIEHCRLFLAKYKIPKEIVFLKELPKNATGKIQKAQLVNQLKSR 496
|
Length = 496 |
| >gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 209 bits (534), Expect = 4e-61
Identities = 145/529 (27%), Positives = 220/529 (41%), Gaps = 68/529 (12%)
Query: 41 HGSTRYTWLQTYQRCRRLASALCKRSIGL--GCTVAIIAPNIPAIYEAHFGVPMAGAVLN 98
T T+ ++ RLA L R +GL G VA+I+PN G AG +++
Sbjct: 6 DTGTELTFADLLKKALRLAKGL--RKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGIVS 63
Query: 99 AVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDES 158
A N +A L S +I D + +EA K E R +IV+
Sbjct: 64 AANPSYTPDELAHQLKISKPKLIFCDPDELDKVKEAAK--ELGPVVR-----IIVLDSA- 115
Query: 159 CDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQS----IALGYTSGTTASPKGVV 214
G + E L+ D P AL Y+SGTT PKGV+
Sbjct: 116 ----------PDGVLRIEDLLEPRLGAEDEFRPTPLIDGKDDTAALLYSSGTTGLPKGVM 165
Query: 215 LSHRGAYLMSLSVALIWGMNE---GAVYLWTLPMFHCNG-WCYTWSLAALCG-TSICLRQ 269
LSH+ V N V L LP +H G SL LCG T I + +
Sbjct: 166 LSHKNIIANLSQVQDTLKGNPDSSNDVVLTFLPFYHAYGLTTTLASL--LCGATVIIMPK 223
Query: 270 VTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHA 329
++ I KY VT P + ++ +P D L + + +GAAP L
Sbjct: 224 FDSETFLKLIEKYKVTSLFLVPPIAVALAKSPLVDKY-DLSSLRVI-FSGAAPLSKELQE 281
Query: 330 MSQKGF---HVTHTYGLSETYGPSTVCAW-KPEWDS---LPPETQARMKARQGVRFIGLE 382
+K F + YG++ET +T+ + S L P +A+
Sbjct: 282 ELRKRFPNTTIKQGYGMTETGPATTLTPPGDEKPGSVGRLVPNVEAK------------- 328
Query: 383 KLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFA-NGWYHTGDLGVKH 441
++D + + + + GE+ + G +MKGYL NP+A +ET +GW HTGD+G
Sbjct: 329 ---IVDEDGGKSLGPNER--GELCVKGPQIMKGYLNNPEATKETIDEDGWLHTGDIGYFD 383
Query: 442 PDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTL 501
D I DR K++I G + E+E ++ HP V +A+V+ DE GE P A+V L
Sbjct: 384 EDGNFYIVDRKKELIKYKGYQVPPAELEAVLLEHPKVADAAVIGIPDEVAGELPRAYVVL 443
Query: 502 KPEVDKSNEQQLAEDIMKFCRAKMPAY-WVPKSIVFGP-LPKTATGKIQ 548
KP + +++ + K+ Y + +VF +PK+ +GKI
Sbjct: 444 KP-----GSKLTEQEVKDYVAKKVAKYKQLRGGVVFVDEIPKSPSGKIL 487
|
This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487 |
| >gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 210 bits (536), Expect = 7e-61
Identities = 158/568 (27%), Positives = 247/568 (43%), Gaps = 65/568 (11%)
Query: 21 TPLWF-LDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASAL-CKRSIGLGCTVAIIAP 78
T L+ L+ +A +P +T++V ++ + + RLA L + + G V +
Sbjct: 10 TSLFHNLEVSARRYPDKTAIVFYGRAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQ 69
Query: 79 NIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIM 138
N P A++ + A AV+ VN +A + S + V +V E LA + +
Sbjct: 70 NSPQFVIAYYAILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSE---LAPKVAPAV 126
Query: 139 EEKS---------NGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWK 189
+ I + L+ G V +++ L G
Sbjct: 127 GNLRLRHVIVAQYSDYLPAEPEIAVPAWLRAEPPLQALAPGGVVAWKEALAAGLA----- 181
Query: 190 PPQDEWQS--IA-LGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMF 246
PP +A L YTSGTT PKG + +HR ++ L +V L LP+F
Sbjct: 182 PPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNSTPESVVLAVLPLF 241
Query: 247 HCNGWCYTWSLAALCGTSICL-----RQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAP 301
H G ++ + G ++ L R+ A+ I +Y VTH+ P ++ + +P
Sbjct: 242 HVTGMVHSMNAPIYAGATVVLMPRWDREAAARL----IERYRVTHWTNIPTMVVDFLASP 297
Query: 302 ---SEDTILPLPHVVHVNTAGAAPPPSVLHAMSQK-GFHVTHTYGLSETYGPSTVCAWKP 357
D L + ++ GAA P +V + + G YGL+ET +
Sbjct: 298 GLAERD----LSSLRYIGGGGAAMPEAVAERLKELTGLDYVEGYGLTETMAQT------- 346
Query: 358 EWDSLPPETQARMKARQ--GVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKG 415
S PP R K Q G+ G++ VID T + +P G+ +GEIV+ G V KG
Sbjct: 347 --HSNPP---DRPK-LQCLGIPTFGVDAR-VIDPETLEELP-PGE-VGEIVVHGPQVFKG 397
Query: 416 YLKNPKANEETFA--NG--WYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENM 471
Y P+A E F +G ++ TGDLG + Y I DR K +I + G + EVEN+
Sbjct: 398 YWNRPEATAEAFIEIDGKRFFRTGDLGRMDEEGYFFITDRLKRMINASGFKVWPAEVENL 457
Query: 472 MYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVP 531
+Y HPA+ EA V+A D R GE+ A V L+PE E+I+ + R M AY P
Sbjct: 458 LYKHPAIQEACVIATPDPRRGETVKAVVVLRPEARGKTT---EEEIIAWAREHMAAYKYP 514
Query: 532 KSIVF-GPLPKTATGKIQKHVLRAKAKE 558
+ + F LPK+ +GKI L+ + K
Sbjct: 515 RIVEFVDSLPKSGSGKILWRQLQEQEKA 542
|
Length = 546 |
| >gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE) | Back alignment and domain information |
|---|
Score = 205 bits (524), Expect = 1e-60
Identities = 122/397 (30%), Positives = 174/397 (43%), Gaps = 75/397 (18%)
Query: 187 DWKPPQDEWQS-----------IALG-YTSGTTASPKGVVLSHRGAYLMS-LSVALIWGM 233
+ + PQ+E Q A +TSG+T PK VV + G +L S A G+
Sbjct: 57 NPRLPQEELQQQLADLQPDLDRPATIIFTSGSTGKPKAVVHT-WGNHLASARGSAENLGL 115
Query: 234 NEGAVYLWTLPMFHCNGWCYTWSLA-----ALCGTSICLRQ-VTAKAVYSAIAKYGVTHF 287
+L +LP+FH +G LA L G ++ L A+A+ A+ +GVTH
Sbjct: 116 TPDDNWLLSLPLFHVSG------LAIVMRSLLAGGALVLPDKFDAEAIAEALENHGVTHI 169
Query: 288 CAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQKGFHVTHTYGLSETY 347
P L ++ + L + V GA PPS+L Q+G + TYG++ET
Sbjct: 170 SLVPTQLQRLLESLGAR---WLSSLRAVLLGGAPIPPSLLEQARQRGIPLYPTYGMTET- 225
Query: 348 GPSTVCAWKPE-----WDS----LPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPAD 398
S V KP+ S LP + R+ Q
Sbjct: 226 -ASQVATLKPDDFLAKLGSVGKPLPG-RELRIVNPQ------------------------ 259
Query: 399 GKTIGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIIS 458
GEI++ G + GYL +GW+HTGDLG + Y+ + R D+IIS
Sbjct: 260 ---DGEILVRGPSLFLGYLPQGGLTPPLDEDGWFHTGDLGYLDAEGYLYVLGRRDDLIIS 316
Query: 459 GGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIM 518
GGENI E+E ++ HPAV EA+VV D+ WG+ P AFV P D + ++L
Sbjct: 317 GGENIYPEEIEAVLLQHPAVEEAAVVGVPDDEWGQRPVAFV--VPNDDPVSVEELQA--- 371
Query: 519 KFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRA 554
F K+ Y PK P LP+ A+GKI + LR
Sbjct: 372 -FLADKLAKYKRPKRWYPLPELPRNASGKIDRAALRQ 407
|
O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407 |
| >gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 207 bits (528), Expect = 4e-60
Identities = 138/533 (25%), Positives = 222/533 (41%), Gaps = 63/533 (11%)
Query: 30 ATVHPTRTSVVHGST--RYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAH 87
A+ R +++ +T T+ + + RRLA+ L R G V +++PN
Sbjct: 15 ASEFGDRPALIDAATGRALTYAELERLVRRLAAGLAARGGRKGDVVLLLSPNSLEFPVVF 74
Query: 88 FGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFK 147
V AGAV+ N IA + S + + + E +
Sbjct: 75 LAVLSAGAVVTTANPLYTPAEIAKQVKDSGAKLAITTSELAEKLA------------SLA 122
Query: 148 PPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTT 207
++++ + L E Q D AL Y+SGTT
Sbjct: 123 LEPVVLLDSADDGSAAIDDLLFADEPEPP---VVVIKQDD---------VAALPYSSGTT 170
Query: 208 ASPKGVVLSHRGAYLMSLSVALIWGMNEGA--VYLWTLPMFHCNGWC-YTWSLAALCGTS 264
KGV+L+HR + G N V L LPMFH G +L L T
Sbjct: 171 GRSKGVMLTHRNLIANVAQLVAGEGPNFDREDVTLCVLPMFHIYGLTVILLALLRLGATV 230
Query: 265 ICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPP 324
+ + + + +AI KY VTH P ++ ++V P D L + + + A
Sbjct: 231 VVMPRFDLEKFLAAIEKYKVTHLPVVPPIVLALVKHPIVDK-YDLSSLKQIGSGAAPLGK 289
Query: 325 SVLHAMSQKGFHV--THTYGLSETYGPSTVC---AWKPEWDS---LPPETQARMKARQGV 376
+ A + V YG++E+ +T+C P+ S L P +A+
Sbjct: 290 ELAEAFRARFPGVELGQGYGMTESSPVTTMCPVPEKDPKPGSVGRLVPNVEAK------- 342
Query: 377 RFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETF-ANGWYHTG 435
++D T + +P + GE+ + G VMKGYL NP+A ET +GW HTG
Sbjct: 343 ---------IVDPETGESLPP-NQP-GELWVRGPQVMKGYLNNPEATAETIDKDGWLHTG 391
Query: 436 DLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESP 495
DLG D Y+ I DR K++I G ++ E+E ++ HP + +A+V+ DE GE P
Sbjct: 392 DLGYFDEDGYLFIVDRLKELIKYKGFQVAPAELEALLLSHPEIADAAVIPYPDEEAGEIP 451
Query: 496 CAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVF-GPLPKTATGKI 547
AFV +P + S +++M+F ++ Y + +VF +PK+ +GKI
Sbjct: 452 MAFVVRQPGSELS-----EDEVMQFVAKQVAPYKKVRKVVFVDAIPKSPSGKI 499
|
4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504 |
| >gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 201 bits (513), Expect = 2e-57
Identities = 164/566 (28%), Positives = 227/566 (40%), Gaps = 70/566 (12%)
Query: 26 LDRAATVHPTRTSVV--HGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAI 83
D P R ++V H + RYTW Q RLA L + G V I APN
Sbjct: 24 FDATVARFPDREALVVRHQALRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEW 83
Query: 84 YEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSAS-AVIMVD----QEYFKLAEEALKIM 138
F GA+L +N A + + LG S VI D +Y + +E L +
Sbjct: 84 LLTQFATARIGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGL 143
Query: 139 EEKSNGRFKPPLL-----IVIGDESCDPKDLKYA--LGRGAVEYEKFLQTGDPQFDWKPP 191
E G L +V + P L + RG + L D P
Sbjct: 144 AEGQPGALACERLPELRGVVSLAPAPPPGFLAWHELQARGETVSREALAERQASLDRDDP 203
Query: 192 QDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGW 251
I + YTSGTT PKG LSH VA G+ E +P++HC G
Sbjct: 204 ------INIQYTSGTTGFPKGATLSHHNILNNGYFVAESLGLTEHDRLCVPVPLYHCFG- 256
Query: 252 CYTWSLAALC-GTSICLRQVTAK--AVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILP 308
+L + G + A A+ + T P + + ++ P
Sbjct: 257 MVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQRGN-FD 315
Query: 309 LPHVVHVNTAGAAPPPSV-------LHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDS 361
L + AGA P V +H M++ V YG++ET S V D
Sbjct: 316 LSSLRTGIMAGAPCPIEVMRRVMDEMH-MAE----VQIAYGMTET---SPVSLQTTAADD 367
Query: 362 LPP--ETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKT-----IGEIVMSGNVVMK 414
L ET R + V+ V+D DG T IGE+ G VMK
Sbjct: 368 LERRVETVGRTQPHLEVK--------VVD--------PDGATVPRGEIGELCTRGYSVMK 411
Query: 415 GYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMY 473
GY NP+A E+ +GW HTGDL Y+ I RSKD+II GGENI E+E ++
Sbjct: 412 GYWNNPEATAESIDEDGWMHTGDLATMDEQGYVRIVGRSKDMIIRGGENIYPREIEEFLF 471
Query: 474 LHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKS 533
HPAV + V DE++GE A+V L P E++ +FC+A++ + VP+
Sbjct: 472 THPAVADVQVFGVPDEKYGEEIVAWVRLHP-----GHAASEEELREFCKARIAHFKVPRY 526
Query: 534 IVF-GPLPKTATGKIQKHVLRAKAKE 558
F P T TGK+QK +R + E
Sbjct: 527 FRFVDEFPMTVTGKVQKFRMREISIE 552
|
Length = 558 |
| >gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 198 bits (505), Expect = 6e-57
Identities = 149/531 (28%), Positives = 242/531 (45%), Gaps = 53/531 (9%)
Query: 30 ATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFG 89
A P R ++V+ ++ + +QR + A L R IG G VA++ N A E F
Sbjct: 12 ARRTPDRAALVYRDQEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFA 71
Query: 90 VPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPP 149
GAV +N RL A +A++LG + + +++VD+E+ +A+ +E
Sbjct: 72 ASYLGAVFLPINYRLAADEVAYILGDAGAKLLLVDEEF-----DAIVALETP-------- 118
Query: 150 LLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTAS 209
++ D + + A G + PQ + L YTSGTT
Sbjct: 119 --KIVIDAAAQADSRRLAQGGLEIP---------PQA----AVAPTDLVRLMYTSGTTDR 163
Query: 210 PKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAALC-GTSICL- 267
PKGV+ S+ + S+ + G+ L P++H G +A L G ++ +
Sbjct: 164 PKGVMHSYGNLHWKSIDHVIALGLTASERLLVVGPLYHV-GAFDLPGIAVLWVGGTLRIH 222
Query: 268 RQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVL 327
R+ +AV +AI ++ +T APV+L+ ++ P D L + G P S +
Sbjct: 223 REFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRDR-FDLDSLAWCIGGGEKTPESRI 281
Query: 328 HAMSQ--KGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLD 385
++ YGL+ET T+ E + + +A + + + D
Sbjct: 282 RDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIGSTGRA-------LAHVEIRIAD 334
Query: 386 VIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNY 445
R +P + K GEI M G V KGY K+P+ E F W+ +GD+G + +
Sbjct: 335 G-AGRW---LPPNMK--GEICMRGPKVTKGYWKDPEKTAEAFYGDWFRSGDVGYLDEEGF 388
Query: 446 IEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEV 505
+ + DR KD+IISGGENI+S EVE ++Y P V EA+V+ D+RWGE A V L P
Sbjct: 389 LYLTDRKKDMIISGGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVVVLNP-- 446
Query: 506 DKSNEQQLAEDIMKFCRAKMPAYWVPKS-IVFGPLPKTATGKIQKHVLRAK 555
E + + CR ++ ++ VP+ V LP+ +GK+ K VLR +
Sbjct: 447 ---GATLTLEALDRHCRQRLASFKVPRQLKVRDELPRNPSGKVLKRVLRDE 494
|
Length = 497 |
| >gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 196 bits (501), Expect = 5e-56
Identities = 142/540 (26%), Positives = 221/540 (40%), Gaps = 57/540 (10%)
Query: 28 RAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAH 87
A +P R ++V G TR T+ Q R R A +G G VA+++ N P E
Sbjct: 20 SALKRYPDRPALVLGDTRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRP---EV- 75
Query: 88 FGVPMAGAVLNAVNIRLNA----PTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSN 143
A + L+ A++L + + ++VD F E AL ++ +
Sbjct: 76 LMAIGAAQLAGLRRTALHPLGSLDDHAYVLEDAGISTLIVDPAPF--VERALALLARVPS 133
Query: 144 GRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQS---IAL 200
LK+ L G V L +F P L
Sbjct: 134 --------------------LKHVLTLGPVPDGVDLLAAAAKFGPAPLVAAALPPDIAGL 173
Query: 201 GYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAAL 260
YT GTT PKGV+ +HR M+ W +L P+ H G + +L
Sbjct: 174 AYTGGTTGKPKGVMGTHRSIATMAQIQLAEWEWPADPRFLMCTPLSHAGGAFFLPTLL-R 232
Query: 261 CGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAP-SEDTILP-LPHVVHVNTA 318
GT I L + V AI + +T P ++ ++++ P L L V +
Sbjct: 233 GGTVIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDLRTRDLSSLETVYY---- 288
Query: 319 GAAP--PPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGV 376
GA+P P + A+ + G YG +E P + + D P + + +
Sbjct: 289 GASPMSPVRLAEAIERFGPIFAQYYGQTEA--PMVITYLRKR-DHDPDDPKRLTSCGRPT 345
Query: 377 RFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGD 436
+ + LD + V +GEI + G +VM GY P+ E F +GW HTGD
Sbjct: 346 PGLRVALLDEDG----REVAQG--EVGEICVRGPLVMDGYWNRPEETAEAFRDGWLHTGD 399
Query: 437 LGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPC 496
+ + D + I DR KD+I++GG N+ EVE+++ HPAV + +V+ DE+WGE+
Sbjct: 400 VAREDEDGFYYIVDRKKDMIVTGGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVT 459
Query: 497 AFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLRAK 555
A V L+P A ++ + + + PK + F LP TA GK K LRA+
Sbjct: 460 AVVVLRPGAAVD-----AAELQAHVKERKGSVHAPKQVDFVDSLPLTALGKPDKKALRAR 514
|
Length = 524 |
| >gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 186 bits (474), Expect = 4e-53
Identities = 121/505 (23%), Positives = 193/505 (38%), Gaps = 74/505 (14%)
Query: 47 TWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNA 106
TW LA AL + I G VA++ N + + GA + +N RL
Sbjct: 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTE 60
Query: 107 PTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKY 166
L +++ D L E+ D
Sbjct: 61 NERTNQLEDLDVQLLLTDS---LLEEKDF---------------QADSLDRI-------E 95
Query: 167 ALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLS 226
A GR L +TSGTT PK V + R Y ++
Sbjct: 96 AAGRYETSLSASFNMDQI-------------ATLMFTSGTTGKPKAVPHTFRNHYASAVG 142
Query: 227 VALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAALCGTSICLRQVTAKA-VYSAIAKYGVT 285
G E +L +LP++H +G + + G + LR V + IA VT
Sbjct: 143 SKENLGFTEDDNWLLSLPLYHISGLSILFR-WLIEGAT--LRIVDKFNQLLEMIANERVT 199
Query: 286 HFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQKGFHVTHTYGLSE 345
H P LN +++ + L + G+A P ++ Q G + +YG++E
Sbjct: 200 HISLVPTQLNRLLDEGGHNENLRK-----ILLGGSAIPAPLIEEAQQYGLPIYLSYGMTE 254
Query: 346 TYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEI 405
T S V PE AR V L + + + + + GEI
Sbjct: 255 TC--SQVTTATPEML----------HARPDVG----RPLAGREIKIKVD---NKEGHGEI 295
Query: 406 VMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISS 465
++ G +MKGYL + GW++TGD+G + ++ + R D+IISGGENI
Sbjct: 296 MVKGANLMKGYLYQGELTPAFEQQGWFNTGDIGELDGEGFLYVLGRRDDLIISGGENIYP 355
Query: 466 VEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKM 525
E+E ++Y HP + EA VV + D WG+ P A++ + ++ + ++ + K+
Sbjct: 356 EEIETVLYQHPGIQEAVVVPKPDAEWGQVPVAYIVSESDISQ-------AKLIAYLTEKL 408
Query: 526 PAYWVPKSIVFGP-LPKTATGKIQK 549
Y VP + LP A+GKI +
Sbjct: 409 AKYKVPIAFEKLDELPYNASGKILR 433
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436 |
| >gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 186 bits (473), Expect = 4e-52
Identities = 147/560 (26%), Positives = 237/560 (42%), Gaps = 75/560 (13%)
Query: 25 FLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIY 84
FL +AA P R ++V G +TW + R LA+AL R + G + + + N ++
Sbjct: 12 FLRQAARRFPDRIALVWGDRSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMF 71
Query: 85 EAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNG 144
E+ F GAV N R +A+L ++ A M+ F A++
Sbjct: 72 ESMFAAFRLGAVWVPTNFRQTPDEVAYL-AEASGARAMICHADFPEHAAAVRAASPDLTH 130
Query: 145 RFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFL--QTGDPQFDWKPPQDE--WQSIAL 200
+ IG R ++YE + G + D+ W
Sbjct: 131 V------VAIGG------------ARAGLDYEALVARHLGARVANAAVDHDDPCW----F 168
Query: 201 GYTSGTTASPKGVVLSH-RGAYLMSLSVA-LIWGMNEGAVYLWTLPMFHCNGWCYTWSLA 258
+TSGTT PK VL+H + A++++ +A L+ G E L P+ H G +
Sbjct: 169 FFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDASLVVAPLSHGAG------IH 222
Query: 259 ALC-----GTSICL--RQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPH 311
LC ++ L + V++ + ++ VT+ P +L +V P+ D H
Sbjct: 223 QLCQVARGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAVDR---YDH 279
Query: 312 --VVHVNTAGAAPPPSVL----HAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPE 365
+ +V AGA P A+++ G + +GL E G TV P
Sbjct: 280 SSLRYVIYAGA---PMYRADQKRALAKLGKVLVQYFGLGEVTGNITVLP--PALHDAEDG 334
Query: 366 TQARM----KARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPK 421
AR+ R G+ ++ + D + +P G+T GEI + G V GY NP+
Sbjct: 335 PDARIGTCGFERTGM------EVQIQDDEGR-ELPP-GET-GEICVIGPAVFAGYYNNPE 385
Query: 422 ANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEA 481
AN + F +GW+ TGDLG ++ I R+ D+ ISGG N+ E+E + HPAV E
Sbjct: 386 ANAKAFRDGWFRTGDLGHLDARGFLYITGRASDMYISGGSNVYPREIEEKLLTHPAVSEV 445
Query: 482 SVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LP 540
+V+ D WGE A + +++ + K+ Y +PK F LP
Sbjct: 446 AVLGVPDPVWGEVGVAVCVARDGAPVD-----EAELLAWLDGKVARYKLPKRFFFWDALP 500
Query: 541 KTATGKIQKHVLRAKAKEMG 560
K+ GKI K ++R + +E G
Sbjct: 501 KSGYGKITKKMVREELEERG 520
|
Length = 528 |
| >gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 186 bits (473), Expect = 8e-52
Identities = 163/570 (28%), Positives = 250/570 (43%), Gaps = 73/570 (12%)
Query: 26 LDRAATVH-PTRTSVVHGSTR--YTWLQTYQRCRRLASALCKR-SIGLGCTVAIIAPNIP 81
L+ +TVH T + G+ + T+ R LA AL I V + N
Sbjct: 16 LEYGSTVHGDTTVTTWGGAEQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCA 75
Query: 82 AIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEK 141
E F V GAV N +N +L I ++ H+ VI+ D +LAE+ +I++E
Sbjct: 76 EHLEVLFAVACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADP---RLAEQLGEILKEC 132
Query: 142 SNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALG 201
R ++ IG D G YE L +DW P DE + A+
Sbjct: 133 PCVR----AVVFIGPSDADSAAAHMPEGIKVYSYEALLDGRSTVYDW-PELDETTAAAIC 187
Query: 202 YTSGTTASPKGVVLSHRGAYL--MSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAA 259
Y++GTT +PKGVV SHR YL +SL + G +L +P++H W LAA
Sbjct: 188 YSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGESFLCCVPIYHVLSWGV--PLAA 245
Query: 260 -LCGTSICL--RQVTAKAVYSAIAKY--GVTHFCAAPVVLNSIV-----NAPSEDTILPL 309
+ GT + ++A + IA V H P + ++ N P ++
Sbjct: 246 FMSGTPLVFPGPDLSAPTLAKIIATAMPRVAH--GVPTLWIQLMVHYLKNPPERMSL--- 300
Query: 310 PHVVHVNTAGAAPPPSVLHAMSQK-GFHVTHTYGLSETYGPSTVCAWKPEWDSLPP---- 364
+ G+A PP ++ A ++ G V H +G++ET TV + PP
Sbjct: 301 ---QEIYVGGSAVPPILIKAWEERYGVDVVHVWGMTETSPVGTV--------ARPPSGVS 349
Query: 365 -ETQARMKARQGVRF-IGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNP-- 420
E + + QG RF LE V D + + + + GEI + GN V Y +P
Sbjct: 350 GEARWAYRVSQG-RFPASLEYRIVNDGQV---MESTDRNEGEIQVRGNWVTASYYHSPTE 405
Query: 421 ---------------KANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISS 465
AN+ A+GW TGD+G D ++ I DR++D+I SGGE I S
Sbjct: 406 EGGGAASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGFLTIHDRARDVIRSGGEWIYS 465
Query: 466 VEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKM 525
++EN + P V+E +V+ D++WGE P A L P ++ + E AE + R ++
Sbjct: 466 AQLENYIMAAPEVVECAVIGYPDDKWGERPLAVTVLAPGIEPTRET--AERLRDQLRDRL 523
Query: 526 PAYWVPKSIVF-GPLPKTATGKIQKHVLRA 554
P + +P+ F + KT+ GK K LR
Sbjct: 524 PNWMLPEYWTFVDEIDKTSVGKFDKKDLRQ 553
|
Length = 576 |
| >gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 180 bits (459), Expect = 1e-51
Identities = 117/377 (31%), Positives = 161/377 (42%), Gaps = 40/377 (10%)
Query: 199 ALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLA 258
A +T GTT +PK SHR + AL+ G+ G V L LP+FH G LA
Sbjct: 6 AYFHTGGTTGAPKLARHSHRNEVANAWMAALLSGLGPGDVLLNGLPLFHVGG-AIVTGLA 64
Query: 259 ALC-------GTSICLRQVTAKAVYSAI----AKYGVTHFCAAPVVLNSIVNAPSEDT-I 306
L T R AV + +Y VT A P VL +++ P D I
Sbjct: 65 PLARGATVVLPTPSGFRN---PAVVANFWKIVERYRVTLLSAVPTVLAALLQVPLGDADI 121
Query: 307 LPLPHVVHVNTAGAAP-PPSVLHAMSQK-GFHVTHTYGLSETYGPSTVCAWKPEWDSLPP 364
L + + GAAP P V G V YG++E G S + P
Sbjct: 122 SSLRYAL----TGAAPLPVEVARRFEAVTGVPVVEGYGMTEGTGVSAI---------NPR 168
Query: 365 ETQARMKARQGVRFIGLE-KLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKAN 423
R + G+R ++ +D +G + + G V GYL +
Sbjct: 169 GGPRRPGS-VGLRLPYTRVRVAKLDAGGALGRDCAPGEVGVLAIRGPNVFPGYLNDAHNA 227
Query: 424 EETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASV 483
+GW +TGDLG D Y+ + R+KD+II GG NI +E + HPAV A+
Sbjct: 228 GARLEDGWLNTGDLGRIDADGYLWLTGRAKDLIIRGGHNIDPQMIEEALLRHPAVALAAA 287
Query: 484 VARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMP-AYWVPKSI-VFGPLPK 541
V R D GE P A+V LKP + +++ F +A++P VPK+I + LP
Sbjct: 288 VGRPDAYAGELPVAYVQLKPGATVT-----EGELLAFVKARIPERAAVPKAIYIIDALPL 342
Query: 542 TATGKIQKHVLRAKAKE 558
TA GKI K LR A E
Sbjct: 343 TAVGKIFKPRLRCDAAE 359
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359 |
| >gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase) | Back alignment and domain information |
|---|
Score = 183 bits (466), Expect = 3e-51
Identities = 145/553 (26%), Positives = 232/553 (41%), Gaps = 62/553 (11%)
Query: 13 NAANYMALTPLWFLDR-AATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGC 71
NAA Y FLDR + ++ + T+ + + R +AL + I
Sbjct: 4 NAAVY-------FLDRHLNEGRGDKIALYYDDGSLTYGELQEEVNRWGNALRELGIEREN 56
Query: 72 TVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLA 131
V +I + P A +G GAV +N L + L S + V+++ +E +++
Sbjct: 57 RVLLILLDTPEFPTAFWGAIKIGAVPVPINTLLTPDDYRYYLNDSRARVLVISEELWEVL 116
Query: 132 EEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPP 191
+ AL+ + +IV+G G GA+ Y + + T + +
Sbjct: 117 KPALQKDPHLRH-------VIVVGGA-----------GPGALSYAQLIATAAEELEAAAT 158
Query: 192 Q-DE---WQSIALGYTSGTTASPKGVVLSHRGAYLMS-LSVALIWGMNEGAVYLWTLPMF 246
D+ W Y+SG+T PKGVV H + + + G+ E V +F
Sbjct: 159 SADDMAFWL-----YSSGSTGRPKGVVHLHHDMLVTAEAYAKNVLGITEDDVVFSAAKLF 213
Query: 247 HC----NGWCYTWSLAALCGTSICL-RQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAP 301
NG + S+ A T++ + + T AV++ I +Y T F P + +++ AP
Sbjct: 214 FAYGLGNGLYFPLSVGA---TTVLMPERPTPDAVFATIERYKPTVFFGVPTLYAAMLAAP 270
Query: 302 SEDTILPLPHVVHVNTAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDS 361
E L + +AG A P + + ++ F + G+ T + +P +
Sbjct: 271 -EKPERDLSSLRLCVSAGEALPAEIGYRW-KELFGLEILDGIGSTEMLHIFLSNRP--GA 326
Query: 362 LPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPK 421
+ T + V+ + + +V ADG IGE+ + G+ GY +
Sbjct: 327 VKYGTSGKPVPGYEVKLVDEDGEEV----------ADG-EIGELWVRGDSSAAGYWNRRE 375
Query: 422 ANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEA 481
ETF W TGD + D Y RS D++ G +S EVE+ + HPAVLEA
Sbjct: 376 KTRETFVGEWTRTGDKYYRDEDGYYWYCGRSDDMLKVSGIWVSPFEVEDALLQHPAVLEA 435
Query: 482 SVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVF-GPLP 540
+VV DE P AFV LK S E L ++ F + K+ Y P+ I F LP
Sbjct: 436 AVVGAEDEDGLTKPKAFVVLKDGYQPSPE--LETELKDFVKDKLAPYKYPRWIEFVDELP 493
Query: 541 KTATGKIQKHVLR 553
KTATGKIQ+ LR
Sbjct: 494 KTATGKIQRFKLR 506
|
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506 |
| >gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Score = 183 bits (465), Expect = 5e-51
Identities = 161/560 (28%), Positives = 231/560 (41%), Gaps = 80/560 (14%)
Query: 25 FLDRAATVHPTRTSVV-----HGST-RYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAP 78
D A P + ++ HG+ R+++ + R R+A L + +G G V+ P
Sbjct: 27 HFDAAVANCPDKPALTAYRDGHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLP 86
Query: 79 NIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIM 138
N + GAVLN + ++F+L H+ S V +V + A+
Sbjct: 87 NRWEFTALYLACARIGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMA-- 144
Query: 139 EEKSNGRFKPPLL--IVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEW- 195
+ K P L +V+ D G G +++ L T P+ D P
Sbjct: 145 ---RELQSKLPALRQVVVID------------GDGDDSFDRVLMT--PERDDTPDAAAIL 187
Query: 196 QSIALG--------YTSGTTASPKGVVLSHRGAYLMSLSVALIWGM--NEGAVYLWTLPM 245
YTSGTT PKGV+ H L S + G V L PM
Sbjct: 188 AGPRPSPDDVTQLIYTSGTTGEPKGVM--HTANTLFSNIHPYAERLELGGGDVILMASPM 245
Query: 246 FHCNGWCYTWSLAALCGTSICLRQVTAKAVYSA--IAKYGVTHFCAAPVVLNSIVNAPSE 303
H G+ Y + + + L Q +A I + GVT A+ L + A E
Sbjct: 246 AHQTGFMYGLMMPLILNATAVL-QDIWNPARAAELIRETGVTFTMASTPFLTDLCRAVKE 304
Query: 304 DTILPLPHVVHVNTAGAA-PPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSL 362
P+P + AGA P V A G + +G++E G TV +
Sbjct: 305 SG-APVPSLFTFLCAGAPIPGILVERAWELLGALIVSAWGMTEN-GAVTV--------TE 354
Query: 363 PPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKT-----IGEIVMSGNVVMKGYL 417
P + + G G+E + VID A+G G +++ G GYL
Sbjct: 355 PDDALEKASTTDGRPLPGVE-VKVID--------ANGAKLSQGETGRLLVRGCSNFGGYL 405
Query: 418 KNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPA 477
K P N T A GW+ TGDL + + YI I RSKD+II GGENI VE+EN++Y HPA
Sbjct: 406 KRPHLNS-TDAEGWFDTGDLAFQDAEGYIRINGRSKDVIIRGGENIPVVEIENLLYQHPA 464
Query: 478 VLEASVVARADERWGESPCAFVTLKP--EVDKSNEQQLAEDIMKFCRAKMPA--YWVPKS 533
V + ++VA DER GE CA V KP +D + ++ F +A+ A Y +
Sbjct: 465 VAQVAIVAYPDERLGERACAVVVPKPGCTLDFA-------AMVAFLKAQKVALQYIPERL 517
Query: 534 IVFGPLPKTATGKIQKHVLR 553
V LP T GKIQK LR
Sbjct: 518 EVVDALPATPAGKIQKFRLR 537
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 179 bits (457), Expect = 1e-50
Identities = 99/358 (27%), Positives = 154/358 (43%), Gaps = 26/358 (7%)
Query: 199 ALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLA 258
+ YTSGTT PKGVVL+H + ++ W V L LP+ H +G
Sbjct: 92 LIIYTSGTTGRPKGVVLTHGNLAANARALVEAWRWTASDVLLHALPLHHVHGLFNALHCP 151
Query: 259 ALCGTS-ICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPL-PHVVHVN 316
G S L + + + +T F P + ++ D + +
Sbjct: 152 LWAGASVEFLPRFDPQERDALRLLPRITVFMGVPTIYTRLLEHYEFDDAAAAAARNLRLF 211
Query: 317 TAGAAP-PPSVLHAMSQKGFH-VTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQ 374
+G+A P VL ++ H + YG++ET G + P R
Sbjct: 212 VSGSAALPVPVLERWEERTGHTLLERYGMTET-GMALSN----------PLDGERRPGTV 260
Query: 375 GVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETF-ANGWYH 433
G+ G+E + ++D +P+ A +GEI + G V Y P+A E F +GW+
Sbjct: 261 GLPLPGVE-VRIVDEDGGEPLAAG--EVGEIQVRGPNVFSEYWNKPEATAEAFTEDGWFK 317
Query: 434 TGDLGVKHPDNYIEIKDRSKDIII-SGGENISSVEVENMMYLHPAVLEASVVARADERWG 492
TGD+GV D Y I R D II SGG +S++E+E + HP V E +V+ D WG
Sbjct: 318 TGDVGVVDEDGYYRILGRKSDDIIKSGGYKVSALEIEEALLEHPGVAEVAVIGVPDPDWG 377
Query: 493 ESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQK 549
E+ A V + ++ + R K+ Y +PK ++ LP+ A GK+QK
Sbjct: 378 EAVVAVVVPEA-----GAALTLAELRAWAREKLAPYKIPKRVIVVDELPRNAMGKVQK 430
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 183 bits (467), Expect = 2e-50
Identities = 153/575 (26%), Positives = 222/575 (38%), Gaps = 79/575 (13%)
Query: 25 FLDRAATVHPTRT--SVVHGSTRY------TWLQTYQRCRRLASALCKRSIGLGCTVAII 76
L RAA HP S + + T+ + R A+ L +G G VA +
Sbjct: 30 LLSRAAARHPDAPALSFLLDADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFL 89
Query: 77 APNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMV-----DQEYFKLA 131
PN+P + A +G AG N +N L IA LL + + V++ + ++
Sbjct: 90 LPNLPETHFALWGGEAAGIA-NPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKV 148
Query: 132 EEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRG--AVEYEKFL-----QTGDP 184
E L + E + + + + PK L L R F Q GD
Sbjct: 149 AEVLAALPE-----LRTVVEVDLARYLPGPKRLAVPLIRRKAHARILDFDAELARQPGDR 203
Query: 185 QFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLP 244
F +P + A +T GTT PK +H + AL+ G+ G LP
Sbjct: 204 LFSGRPIGPD-DVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLGPGDTVFCGLP 262
Query: 245 MFHCNGWCYTWSLAALC-------GTSICLRQVTAKAVY----SAIAKYGVTHFCAAPVV 293
+FH N LA L T R V + +Y + P V
Sbjct: 263 LFHVNA-LLVTGLAPLARGAHVVLATPQGYR---GPGVIANFWKIVERYRINFLSGVPTV 318
Query: 294 LNSIVNAPSEDTILPLPHVVHVNTA--GAAP-PPSVLHAMSQK-GFHVTHTYGLSETYGP 349
+++ P + + + A GAAP P V G + YGL+E
Sbjct: 319 YAALLQVPVDGH-----DISSLRYALCGAAPLPVEVFRRFEAATGVRIVEGYGLTEATCV 373
Query: 350 STVCAWKPEWDSLPPETQARMKARQGVRFIGLE----KLDVIDTRTQQPVPADGKTIGEI 405
S+V PP+ + R+ + G+R LD R + D +G +
Sbjct: 374 SSVN---------PPDGERRIGS-VGLRLPYQRVRVVILDD-AGRYLRDCAVDE--VGVL 420
Query: 406 VMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISS 465
++G V GYL+ +GW +TGDLG D Y + R+KD+II GG NI
Sbjct: 421 CIAGPNVFSGYLEAAHNKGLWLEDGWLNTGDLGRIDADGYFWLTGRAKDLIIRGGHNIDP 480
Query: 466 VEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKM 525
+E + HPAV A+ V R D GE P A+V LKP + +++ F R +
Sbjct: 481 AAIEEALLRHPAVALAAAVGRPDAHAGELPVAYVQLKPGASAT-----EAELLAFARDHI 535
Query: 526 P---AYWVPKSIVF-GPLPKTATGKIQKHVLRAKA 556
A VPK + LPKTA GKI K LR A
Sbjct: 536 AERAA--VPKHVRILDALPKTAVGKIFKPALRRDA 568
|
Length = 632 |
| >gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 176 bits (448), Expect = 3e-50
Identities = 109/377 (28%), Positives = 155/377 (41%), Gaps = 54/377 (14%)
Query: 199 ALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLA 258
A+ YTSG+T PKGV+LSHR + S+A + E L LP G A
Sbjct: 6 AIIYTSGSTGEPKGVMLSHRNLTAGARSIAQYLELTEDDRILAVLPFSFDYG-LSQLLTA 64
Query: 259 ALCGTSICL--RQVTAKAVYSAIAKYGVTHFCAAP---VVLNSIVNAPSEDTILPLPHVV 313
G ++ L R + V +AK +T F P L + ED P +
Sbjct: 65 FRVGGTLVLESRFAFPRDVLKHLAKERITGFAGVPTTWAQLLRLDPLARED----FPSLR 120
Query: 314 HV-NTAGAAPPPSVLH---AMSQKGFHVTHTYGLSE----TYGPSTVCAWKPEWDSLPPE 365
++ N GA P ++L A YGL+E TY LPPE
Sbjct: 121 YLTNAGGALPAKTILQLRRAFPDAKLFSM--YGLTEAFRSTY--------------LPPE 164
Query: 366 TQARMKARQGV--RFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKAN 423
+ R + I +L V+D +GE+V G VMKGY +P+A
Sbjct: 165 ---ELDRRPDSIGKAIPNVELWVVD-EDGNRCAP--GEVGELVHRGANVMKGYWNDPEAT 218
Query: 424 EETFA------NGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPA 477
E +TGDL + Y+ R D+I + G +S E+E ++ HP
Sbjct: 219 AERLRPGPLPGEIVLYTGDLVRMDEEGYLYFVGRKDDMIKTRGYRVSPTEIEEVICAHPL 278
Query: 478 VLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVF- 536
V EA+V+ D G++ A V E ++++K CR +P Y VP IVF
Sbjct: 279 VAEAAVIGVPDPLLGQAIVAVVVSADG-----ESLDEKELLKHCRKHLPNYMVPAEIVFV 333
Query: 537 GPLPKTATGKIQKHVLR 553
LPK A GK+ + LR
Sbjct: 334 DSLPKNANGKVDRSALR 350
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350 |
| >gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 177 bits (452), Expect = 2e-49
Identities = 102/373 (27%), Positives = 159/373 (42%), Gaps = 42/373 (11%)
Query: 192 QDEWQSIAL-GYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCN- 249
+E +AL + GTT PK + +H + + A G++ G VYL LP H N
Sbjct: 135 LEELPDVALFQLSGGTTGLPKLIPRTHNDYLYSARASAEACGLDPGTVYLAVLPAAH-NF 193
Query: 250 --------GWCYTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAP 301
G GT + + + I + VTH P +LN + A
Sbjct: 194 TLSSPGLLGA------LLAGGTVVLHHPPSPDVAFPLIEREKVTHTALVPALLNLWLEAA 247
Query: 302 SEDTILPLPHVVHVNTAGAAPPPSVLHAMSQKGFHVT--HTYGLSETYGPSTVCAWKPEW 359
D L + + GA P L ++ +G++E G + +
Sbjct: 248 EWDQ-ADLSSLRVIQVGGAPLSPE-LARRVEERLGCPLQQVFGMAE--G---LVNYTRLD 300
Query: 360 DSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKN 419
D PP+ R QG +++ ++D + + PVP G +GE++ G ++GY +
Sbjct: 301 D--PPDVIMR---TQGRPISPADEIRIVDDQGE-PVP-PG-EVGELLTRGPYTIRGYYRA 352
Query: 420 PKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAV 478
P+ N F +G+Y TGDL D Y + R KD I GGE IS E+EN++ HPAV
Sbjct: 353 PEHNARAFTDDGFYRTGDLVRIDADGYYRVVGRIKDQINRGGEKISPEEIENLLLSHPAV 412
Query: 479 LEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAK-MPAYWVPKSIVFG 537
+A+VV DE GE CAFV + + ++ F R + + + +P +
Sbjct: 413 ADAAVVGMPDEVLGERICAFVVPRGGAAPT-----LAELRAFLREQGLAKFKLPDRLEVV 467
Query: 538 P-LPKTATGKIQK 549
LP T GK+ K
Sbjct: 468 DSLPLTPVGKVDK 480
|
2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483 |
| >gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 178 bits (453), Expect = 7e-49
Identities = 151/563 (26%), Positives = 222/563 (39%), Gaps = 63/563 (11%)
Query: 26 LDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYE 85
D A R ++ T+ + ++ RR A+ L + G VAI+ PN P
Sbjct: 38 YDNAVARFGDRPALDFFGATTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIV 97
Query: 86 AHFGVPMAGAVLNAVNIRLNAPTIAFLLG-HSASAVIMVDQEYFKLAEEALKIMEEKSNG 144
A + V GAV+ N A + H A I+ D K+A E+
Sbjct: 98 AFYAVLRLGAVVVEHNPLYTAHELEHPFEDHGARVAIVWD----KVAP-----TVERLRR 148
Query: 145 RFKPPLLIVIGDESCDPKDLKYAL-----------------GRGAVEYEKFLQT--GDPQ 185
++ + + P + AL G V +E + G
Sbjct: 149 TTPLETIVSVNMIAAMPLLQRLALRLPIPALRKARAALTGPAPGTVPWETLVDAAIGGDG 208
Query: 186 FDWKPPQDEWQSIAL-GYTSGTTASPKGVVLSHRGAYLMS-LSVALIW--GMNEGA-VYL 240
D P+ +AL YTSGTT PKG L+HR L + + W G+ +G L
Sbjct: 209 SDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRN--LFANAAQGKAWVPGLGDGPERVL 266
Query: 241 WTLPMFHCNGWCYTWSLAALCGTSICL-RQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVN 299
LPMFH G +LA G + L + A+ K+ T P + I
Sbjct: 267 AALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAE 326
Query: 300 APSEDTILPLPHVVHVNTAGAA--PPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKP 357
A E + L V +GA P +V G + YGL+ET P V
Sbjct: 327 AAEERGV-DL-SGVRNAFSGAMALPVSTVELWEKLTGGLLVEGYGLTET-SPIIVGN--- 380
Query: 358 EWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYL 417
P + R GV F E + ++D DG+ GE+++ G V KGY
Sbjct: 381 ------PMSDDRRPGYVGVPFPDTE-VRIVDPEDPDETMPDGEE-GELLVRGPQVFKGYW 432
Query: 418 KNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPA 477
P+ ++F +GW+ TGD+ V D +I I DR K++II+GG N+ EVE ++ HP
Sbjct: 433 NRPEETAKSFLDGWFRTGDVVVMEEDGFIRIVDRIKELIITGGFNVYPAEVEEVLREHPG 492
Query: 478 VLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSI-VF 536
V +A+VV E E A V L+P E + +CR + Y VP+
Sbjct: 493 VEDAAVVGLPREDGSEEVVAAVVLEPGAALD-----PEGLRAYCREHLTRYKVPRRFYHV 547
Query: 537 GPLPKTATGKIQKHVLRAKAKEM 559
LP+ GK V R + +E
Sbjct: 548 DELPRDQLGK----VRRREVREE 566
|
Length = 573 |
| >gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes | Back alignment and domain information |
|---|
Score = 173 bits (440), Expect = 3e-48
Identities = 125/529 (23%), Positives = 200/529 (37%), Gaps = 104/529 (19%)
Query: 36 RTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGA 95
+T+ G T+ + + R A+ L + G V ++ P+ P + A AGA
Sbjct: 1 KTAFYCGEQSLTYRELHDLANRFANVLRALGVSPGDRVLLLLPDSPELVAAFLACLKAGA 60
Query: 96 VLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIG 155
V A+N L + L+ + + S LL+
Sbjct: 61 VAVALNPL--------------------------LTPQDLEHILDDS----GAALLVT-- 88
Query: 156 DESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVL 215
+ D+ Y L YTSGTT PKGV+
Sbjct: 89 ----EADDIAYWL---------------------------------YTSGTTGKPKGVMH 111
Query: 216 SHRGAYLMSLSVAL-IWGMNEGAVYLWTLPMFHCNGWCYTWSLAALCGTS--ICLRQVTA 272
HR + + A + G+ G + +F G + G S + T
Sbjct: 112 RHRDPLTFAEAFARELLGLQPGDRIFSSSKLFFAYGLGNSLLFPLFSGASAVLLPGWPTP 171
Query: 273 KAVYSAIAKYGVTHFCAAPVVLNSIVN--APSEDTILPLPHVVHVNTAGAAPPPSVLHA- 329
+AV +A++ T P + +++ A S + V +AG A P +
Sbjct: 172 EAVLDLLARHRPTVLFGVPALYRALLESGAGSAPLFRSVRLCV---SAGEALPAGLAERW 228
Query: 330 MSQKGFHVTHTYGLSET---YGPSTVCAWKPEWDSLP-PETQARMKARQGVRFIGLEKLD 385
G + G +E + + A +P P P +AR+ G
Sbjct: 229 AEATGIEILDGIGSTEVLHIFISNRPGAARPGTTGRPVPGYEARLVDESG---------- 278
Query: 386 VIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNY 445
+ VPA T+G++ + G + GY P+ + T +GW TGD + D +
Sbjct: 279 -------REVPAG--TVGDLWVRGPSLAPGYWNLPEKTQRTLRDGWLRTGDRFSRDADGW 329
Query: 446 IEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEV 505
+ R+ D+I G+ +S +EVE + HPAV EA+VVA DE AFV +P
Sbjct: 330 YRYQGRADDMIKVSGQWVSPLEVEAALGEHPAVAEAAVVAVPDEDGLVRLKAFVVPRPGE 389
Query: 506 DKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLR 553
+Q L D+ +F R ++ Y P+ I F LP+TATGK+Q+ LR
Sbjct: 390 A--IQQLLERDLHRFLRERLAPYKCPRQIEFLDTLPRTATGKLQRFRLR 436
|
This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436 |
| >gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 171 bits (436), Expect = 9e-48
Identities = 106/363 (29%), Positives = 156/363 (42%), Gaps = 30/363 (8%)
Query: 202 YTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCY-TWS---- 256
+TSGTT PK V+ +H ++ A + ++ WT+ GW WS
Sbjct: 88 FTSGTTGLPKMVLHTHSYPLGHLVTGAYWLDLRPDDLH-WTIAD---PGWAKGAWSSLFA 143
Query: 257 --LAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVH 314
L R+ A+ + +YGVT FCA P ++ H+ H
Sbjct: 144 PWLLGAAVFVYHGRRFDAERTLELLERYGVTTFCAPPTAYRMLLQQDLSSYDFS--HLRH 201
Query: 315 VNTAGAAPPPSVLH-AMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKAR 373
V +AG P V+ + G + YG +ET + A P + + + +
Sbjct: 202 VVSAGEPLNPEVIDWWRAATGLPIRDGYGQTET---GLLVANFP---GMEVKPGSMGRPA 255
Query: 374 QGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSG-NVVMKGYLKNPKANEETFANGWY 432
G R + +ID + P + I V + +GYLK+P+ E T WY
Sbjct: 256 PGYR------VAIIDDEGNELPPGEEGDIAVRVKPRPPGLFRGYLKDPEKTEATIRGDWY 309
Query: 433 HTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWG 492
TGD +K D Y R+ D+I S G I EVE+ + HPAV EA+VV D G
Sbjct: 310 LTGDRAIKDEDGYFWFVGRADDVIKSSGYRIGPFEVESALIEHPAVAEAAVVGSPDPVRG 369
Query: 493 ESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHV 551
E AFV L P S E LA+++ + + + Y P+ I F LPKT +GKI++
Sbjct: 370 EVVKAFVVLAPGYQPSEE--LAKELQEHVKKRTAPYKYPREIEFVEELPKTVSGKIRRVE 427
Query: 552 LRA 554
LRA
Sbjct: 428 LRA 430
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430 |
| >gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 172 bits (437), Expect = 7e-47
Identities = 153/559 (27%), Positives = 243/559 (43%), Gaps = 69/559 (12%)
Query: 25 FLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIY 84
++++ A+ +P + ++ T+ + + +R A+ L K + G VAI+ PN P
Sbjct: 29 YVEQMASRYPEKKALHFLGKDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAV 88
Query: 85 EAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNG 144
++G +AG ++ N + + L S + VI+ F ++ +S
Sbjct: 89 IGYYGTLLAGGIVVQTNPLYTERELEYQLHDSGAKVILCLDLVFP------RVTNVQSAT 142
Query: 145 RFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDE----WQSIA- 199
+ + ++ I D PK+L Y F+Q K + E W S+
Sbjct: 143 KIEHVIVTRIADFLPFPKNLLYP----------FVQKKQSNLVVKVSESETIHLWNSVEK 192
Query: 200 ------------------LGYTSGTTASPKGVVLSHRGAYLMSL-SVALIWGMNEGA-VY 239
L YT GTT PKGV+L+H+ +L V ++ EG V
Sbjct: 193 EVNTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCKEGEEVV 252
Query: 240 LWTLPMFHCNGWCYTWSLAALCGTSICL-RQVTAKAVYSAIAKYGVTHFCAAPVVLNSIV 298
L LP FH G +L+ + G + L + K V+ AI K+ VT F AP + +++
Sbjct: 253 LGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALL 312
Query: 299 NAP--SEDTILPLPHVVHVNTAGAAPPPSVLHAMSQK--GFHVTHTYGLSETYGPSTVCA 354
N+P E I + + +G+AP P + + G + YGL+E+ S V
Sbjct: 313 NSPLLKEYDISSIRACI----SGSAPLPVEVQEKFETVTGGKLVEGYGLTES---SPVTH 365
Query: 355 WKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMK 414
W+ P + + LE + + P + IGEIV+ G +MK
Sbjct: 366 SNFLWEKRVPGSIGVPWPDTEAMIMSLETGEALP-------PGE---IGEIVVKGPQIMK 415
Query: 415 GYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYL 474
GY P+ +GW HTGD+G D + +KDR KD+I++ G N+ EVE ++Y
Sbjct: 416 GYWNKPEETAAVLQDGWLHTGDVGYMDEDGFFYVKDRKKDMIVASGFNVYPREVEEVLYE 475
Query: 475 HPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSI 534
H V E + D GE+ AFV LK + S E+ + +F R + AY VPK
Sbjct: 476 HEKVQEVVTIGVPDPYRGETVKAFVVLKEGTECSEEE-----LNQFARKYLAAYKVPKVY 530
Query: 535 VF-GPLPKTATGKIQKHVL 552
F LPKT GKI + VL
Sbjct: 531 EFRDELPKTTVGKILRRVL 549
|
Length = 563 |
| >gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 170 bits (433), Expect = 1e-46
Identities = 151/547 (27%), Positives = 227/547 (41%), Gaps = 73/547 (13%)
Query: 28 RAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGL--GCTVAIIAPNIPAIYE 85
A + P+ V T+ + R RLA L R++GL G VAI+ N P +E
Sbjct: 1 PAVIMAPSGEVV-------TYGELEARSNRLAHGL--RALGLREGDVVAILLENNPEFFE 51
Query: 86 AHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGR 145
++ +G +N L A IA+++ S + V++V LA+ A ++ E G
Sbjct: 52 VYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVLIVSA---ALADTAAELAAELPAG- 107
Query: 146 FKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSG 205
P LL+V G G YE+ L Q D P DE + Y+SG
Sbjct: 108 -VPLLLVVAGPVP------------GFRSYEEAL---AAQPD-TPIADETAGADMLYSSG 150
Query: 206 TTASPKGVV--LSHRG---AYLMSLSVALIWG-MNEGAVYLWTLPMFHC--NGWCYTWSL 257
TT PKG+ L A M L++ +VYL P++H + +
Sbjct: 151 TTGRPKGIKRPLPGLDPDEAPGMMLALLGFGMYGGPDSVYLSPAPLYHTAPLRFGMS--A 208
Query: 258 AALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSE-----DTILPLPHV 312
AL GT + + + A+ + I +Y VTH P + ++ P E D + L
Sbjct: 209 LALGGTVVVMEKFDAEEALALIERYRVTHSQLVPTMFVRMLKLPEEVRARYD-VSSLRVA 267
Query: 313 VHVNTAGAAP-PPSVLHAMSQ-KGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARM 370
+H AAP P V AM G + Y SE G TV E
Sbjct: 268 IH----AAAPCPVEVKRAMIDWWGPIIHEYYASSEGGG-VTVIT---------SEDWLAH 313
Query: 371 KARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETF-AN 429
G +G ++ ++D +P IG + + Y +P+ +
Sbjct: 314 PGSVGKAVLG--EVRILD-EDGNELPP--GEIGTVYFEMDGYPFEYHNDPEKTAAARNPH 368
Query: 430 GWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADE 489
GW GD+G D Y+ + DR D+IISGG NI E+EN++ HP V + +V DE
Sbjct: 369 GWVTVGDVGYLDEDGYLYLTDRKSDMIISGGVNIYPQEIENLLVTHPKVADVAVFGVPDE 428
Query: 490 RWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQ 548
GE A V D + LA +++ + R ++ Y P+SI F LP+T TGK+
Sbjct: 429 EMGERVKAVVQPADGADAGDA--LAAELIAWLRGRLAHYKCPRSIDFEDELPRTPTGKLY 486
Query: 549 KHVLRAK 555
K LR +
Sbjct: 487 KRRLRDR 493
|
Length = 502 |
| >gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 169 bits (431), Expect = 2e-46
Identities = 148/554 (26%), Positives = 219/554 (39%), Gaps = 72/554 (12%)
Query: 25 FLDRAATVHPTRTSVVHGSTR--YTWLQTYQRCRRLASALCKRSIGL--GCTVAIIAPNI 80
+ A P + +V+ ST T+ + +R RLA RS+GL G VAI N
Sbjct: 2 YPGIHAQTTPDKPAVIMASTGEVVTYRELDERSNRLAHLF--RSLGLKRGDHVAIFMENN 59
Query: 81 PAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEE 140
E + +G VN L A+++ S + ++ +A LK +
Sbjct: 60 LRYLEVCWAAERSGLYYTCVNSHLTPAEAAYIVDDSGARALITSAAKLDVARALLK---Q 116
Query: 141 KSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIAL 200
R L++ GD + + + + P DE +
Sbjct: 117 CPGVR---HRLVLDGDGELEG-------------FVGYAEAVAGLPAT-PIADESLGTDM 159
Query: 201 GYTSGTTASPKGVV--LSHRG--------AYLMSLSVALIWGMNEGAVYLWTLPMFHCNG 250
Y+SGTT PKG+ L + A+L L WG VYL P++H
Sbjct: 160 LYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRL-----WGFRSDMVYLSPAPLYHSAP 214
Query: 251 WCYTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSED----TI 306
+ L GT I + A+ + I +YGVTH P + + ++ P E +
Sbjct: 215 QRAVMLVIRLGGTVIVMEHFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVRDKYDL 274
Query: 307 LPLPHVVHVNTAGAAP-PPSVLHAMSQKGFHVTHT-YGLSETYGPSTVCAWKPEWDSLPP 364
L +H AAP PP V M + H Y +E G T C EW + P
Sbjct: 275 SSLEVAIH----AAAPCPPQVKEQMIDWWGPIIHEYYAATEGLG-FTACD-SEEWLAHPG 328
Query: 365 ETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNP-KAN 423
G G L ++D +P G I G + YL +P K
Sbjct: 329 TV--------GRAMFG--DLHILDDDGA-ELPP--GEPGTIWFEGGRPFE-YLNDPAKTA 374
Query: 424 EETFANG-WYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEAS 482
E +G W GD+G D Y+ + DR+ +IISGG NI E EN++ HP V +A+
Sbjct: 375 EARHPDGTWSTVGDIGYVDEDGYLYLTDRAAFMIISGGVNIYPQEAENLLITHPKVADAA 434
Query: 483 VVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPK 541
V +E GE A V VD LA +++ FCR ++ P+SI F LP+
Sbjct: 435 VFGVPNEDLGEEVKAVVQPVDGVDPGPA--LAAELIAFCRQRLSRQKCPRSIDFEDELPR 492
Query: 542 TATGKIQKHVLRAK 555
TGK+ K +LR +
Sbjct: 493 LPTGKLYKRLLRDR 506
|
Length = 511 |
| >gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 169 bits (430), Expect = 5e-46
Identities = 137/545 (25%), Positives = 211/545 (38%), Gaps = 67/545 (12%)
Query: 26 LDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYE 85
L R A +P R +V G TR+T+ + + A AL + G VA++ N +
Sbjct: 27 LARQAERYPDRPLLVFGGTRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLD 86
Query: 86 AHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGR 145
G GA+ +N L P + +L +S + +++V+ AL+ + G
Sbjct: 87 VFLGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALL----AALEAADP---GD 139
Query: 146 FKPPLLIVIGDESCDPKDLKY------ALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIA 199
P + ++ + + L A +Q GD A
Sbjct: 140 LPLPAVWLLDAPASVSVPAGWSTAPLPPLDAPAPAAA--VQPGDT-------------AA 184
Query: 200 LGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAA 259
+ YTSGTT KGV H Y + A + V TLP+FH N + A
Sbjct: 185 ILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLEIGADDVLYTTLPLFHTNALN-AFFQAL 243
Query: 260 LCGTSICL-RQVTAKAVYSAIAKYGVTHF----CAAPVVLNSIVNAPSEDTILPLPHVVH 314
L G + L + +A + A+ ++G T ++L+ H V
Sbjct: 244 LAGATYVLEPRFSASGFWPAVRRHGATVTYLLGAMVSILLSQPARESDRA------HRVR 297
Query: 315 VNTAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQ 374
V P + G + YG +ET + V A S P + R+
Sbjct: 298 VALGPGVPAALHAAFRERFGVDLLDGYGSTET---NFVIA--VTHGSQRPGSMGRLAPGF 352
Query: 375 GVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGN---VVMKGYLKNPKANEETFANGW 431
R V+D Q +P GE+++ + GY P+ E + N W
Sbjct: 353 EAR--------VVDEH-DQELPDG--EPGELLLRADEPFAFATGYFGMPEKTVEAWRNLW 401
Query: 432 YHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERW 491
+HTGD V+ D + DR KD I GENISS EVE ++ HPAV A+V E
Sbjct: 402 FHTGDRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVLLSHPAVAAAAVFPVPSELG 461
Query: 492 GESPCAFVTLKPEVDKSNEQQL-AEDIMKFCRAKMPAYWVPKSIVF-GPLPKTATGKIQK 549
+ A V L+ L +++ C ++ + VP+ + F LPKT GK+QK
Sbjct: 462 EDEVMAAVVLRD------GTALEPVALVRHCEPRLAYFAVPRYVEFVAALPKTENGKVQK 515
Query: 550 HVLRA 554
VLR
Sbjct: 516 FVLRE 520
|
Length = 542 |
| >gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 167 bits (425), Expect = 1e-45
Identities = 128/522 (24%), Positives = 208/522 (39%), Gaps = 76/522 (14%)
Query: 45 RYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRL 104
R+T+ + RLA+ L +R G +A++A N + HF GA+ +N RL
Sbjct: 22 RWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLNWRL 81
Query: 105 NAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDL 164
+A + LL + +++ D + D +DL
Sbjct: 82 SASELDALLQDAEPRLLLGDDA---------------------------VAAGRTDVEDL 114
Query: 165 KYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMS 224
A + + +P P + S+ L +TSGT+ PKGV+LS R +
Sbjct: 115 --AAFIASADAL------EPADTPSIPPER-VSLIL-FTSGTSGQPKGVMLSERNLQQTA 164
Query: 225 LSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAALCGTSICLRQVT----AKAVYSAIA 280
+ ++ ++ + +L PMFH G + G SI V+ K +
Sbjct: 165 HNFGVLGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVGGSI---LVSNGFEPKRTLGRLG 221
Query: 281 --KYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQKGFHVT 338
G+TH+ P + + P D L H+ + T GA + G +
Sbjct: 222 DPALGITHYFCVPQMAQAFRAQPGFDAA-ALRHLTALFTGGAPHAAEDILGWLDDGIPMV 280
Query: 339 HTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPAD 398
+G+SE TV ++A+ G I + TR V
Sbjct: 281 DGFGMSEA---GTVFGM--------SVDCDVIRAKAGAAGIPTPT---VQTRV---VDDQ 323
Query: 399 GKTI-----GEIVMSGNVVMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRS 452
G GE+++ G + GY + P+A F +GW+ TGD+ + D + + DR
Sbjct: 324 GNDCPAGVPGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDIARRDADGFFWVVDRK 383
Query: 453 KDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQ 512
KD+ ISGGEN+ E+E ++ HP + E +VV AD +WGE +
Sbjct: 384 KDMFISGGENVYPAEIEAVLADHPGIRECAVVGMADAQWGEVGYLAIVPADGAP-----L 438
Query: 513 LAEDIMKFCRAKMPAYWVPKSI-VFGPLPKTATGKIQKHVLR 553
E I ++ Y VPK + + LP+TA+GK+QK LR
Sbjct: 439 DLERIRSHLSTRLAKYKVPKHLRLVDALPRTASGKLQKARLR 480
|
Length = 488 |
| >gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 163 bits (416), Expect = 5e-44
Identities = 139/561 (24%), Positives = 213/561 (37%), Gaps = 89/561 (15%)
Query: 26 LDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYE 85
+ A P R ++V G R T+ + +R RLA L + +G G V I A N E
Sbjct: 9 FEAVADAVPDRVALVCGDRRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVE 68
Query: 86 AHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGR 145
A G A AV VN R + +LL S + ++ ++E+ A +++ R
Sbjct: 69 AMLGAFKARAVPVNVNYRYVEDELRYLLDDSDAVALVYEREF---APRVAEVLPRLPKLR 125
Query: 146 FKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSG 205
L+V+ D S + L GAV+YE L G P+ D+ + + L YT G
Sbjct: 126 ----TLVVVEDGSGND------LLPGAVDYEDALAAGSPERDFGERSPD--DLYLLYTGG 173
Query: 206 TTASPKGVVLSHRGAYLMSLS---------VALIWGM------NEGAVYLWTLPMFHCNG 250
TT PKGV+ + + L + + G P+ H G
Sbjct: 174 TTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAPPLMHGAG 233
Query: 251 WCYTWSLAALCGTSICLRQVT---AKAVYSAIAKYGVTHFCAAPVVLNSIVN----APSE 303
++ A G ++ L A V+ I + V + +IV P
Sbjct: 234 QWAAFA-ALFSGQTVVLLPDVRFDADEVWRTIEREKVN--------VITIVGDAMARPLL 284
Query: 304 DTILP-----LPHVVHVNTAGAAPPPSVLHAMSQKGFH-------VTHTYGLSET-YGPS 350
D + L + + + GA PSV ++ +T + G SET +G S
Sbjct: 285 DALEARGPYDLSSLFAIASGGALFSPSV-----KEALLELLPNVVLTDSIGSSETGFGGS 339
Query: 351 TVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGN 410
A R V+D PV IG I G+
Sbjct: 340 GTVAKGA-----VHTGGPRFTIGPRTV--------VLDEDG-NPVEPGSGEIGWIARRGH 385
Query: 411 VVMKGYLKNPKANEETF--ANG--WYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSV 466
+ + GY K+P+ ETF +G + GD D I + R I +GGE +
Sbjct: 386 IPL-GYYKDPEKTAETFPTIDGVRYAIPGDRARVEADGTITLLGRGSVCINTGGEKVFPE 444
Query: 467 EVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMP 526
EVE + HP V +A VV DERWG+ A V L+ ++ CR+ +
Sbjct: 445 EVEEALKAHPDVADALVVGVPDERWGQEVVAVVQLREGARPD-----LAELRAHCRSSLA 499
Query: 527 AYWVPKSIVFGP-LPKTATGK 546
Y VP++I F + ++ GK
Sbjct: 500 GYKVPRAIWFVDEVQRSPAGK 520
|
Length = 533 |
| >gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 161 bits (410), Expect = 3e-43
Identities = 148/548 (27%), Positives = 234/548 (42%), Gaps = 68/548 (12%)
Query: 26 LDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYE 85
L A +P R +V+ G R ++ + QR RLA+ L + I G TV + PN+ Y
Sbjct: 34 LTDHAARYPDRIAVIDGERRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYI 93
Query: 86 AHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGR 145
F + G AP +A L H AS + + E AL I+ + +G
Sbjct: 94 TFFALLRLGV----------APVLA-LPSHRASEL----GAFASQIEAALLIVARQHSGF 138
Query: 146 FKPPLL-IVIGDESCDPKDLKYALGRGAVEYEKFLQTG----DPQFDWKPPQDEWQSIAL 200
P ++ L++ + G E+ L+ F PP D +
Sbjct: 139 DYRPFARELVAKHPT----LRHVIVAGEAEHPSVLEAALCHPAGLFTPAPPADAGEVAFF 194
Query: 201 GYTSGTTASPKGVVLSHRG-AYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAA 259
+ GTT +PK + +H Y + S + ++ VYL LP H +L
Sbjct: 195 QLSGGTTGTPKLIPRTHNDYYYSVRASAEICG-FDQQTVYLCALPAAHNFPLSSPGALGV 253
Query: 260 L-CGTSICLRQ-VTAKAVYSAIAKYGVTHFCAAP-VVLNSIVNAPSEDTILPLPHVVHVN 316
G ++ L + + + I ++GVT P + + A E L ++ V
Sbjct: 254 FLAGGTVVLAPDPSPELCFPLIERHGVTVTALVPPLASLWLQAAEWERADLSSLRLLQVG 313
Query: 317 TAGAAPP-----PSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSL--PPETQAR 369
A + P+VL Q+ F G++E V + L PPE
Sbjct: 314 GARLSATLARRVPAVLGCQLQQVF------GMAE----GLVN-----YTRLDDPPE---I 355
Query: 370 MKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETF-A 428
+ QG +++ V+D PV G+ GE++ G ++GY + P+ N F A
Sbjct: 356 IIHTQGRPLSPDDEVRVVDAD-GNPVAP-GEV-GELLTRGPYTIRGYYRAPEHNARAFDA 412
Query: 429 NGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARAD 488
+G+Y +GDL + PD Y+ ++ R KD I GGE I++ EVEN++ HPAV +A++VA D
Sbjct: 413 DGFYRSGDLVRRDPDGYLVVEGRVKDQINRGGEKIAAEEVENLLLRHPAVHDAALVAMPD 472
Query: 489 ERWGESPCAFVTLKPEVDKSNE--QQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATG 545
E GE CAF+ +K ++ + + L + A+ +P I F LP TA G
Sbjct: 473 ELLGEKSCAFIVVKEPPLRAAQLRRFLR-------ERGLAAFKLPDRIEFVDSLPLTAVG 525
Query: 546 KIQKHVLR 553
KI K LR
Sbjct: 526 KIDKKALR 533
|
Length = 542 |
| >gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 161 bits (409), Expect = 7e-43
Identities = 71/183 (38%), Positives = 99/183 (54%), Gaps = 9/183 (4%)
Query: 386 VIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDN 444
++D T + VP GE+ G VMKGY +P+ E A+GW HTGDL V +
Sbjct: 384 IVDPETGETVPRG--EQGELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTGDLAVMDEEG 441
Query: 445 YIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPE 504
Y+ I R KD+II GGENI E+E +Y HP + + VV DE++GE CA++ L+P
Sbjct: 442 YVNIVGRIKDMIIRGGENIYPREIEEFLYTHPKIQDVQVVGVPDEKYGEEVCAWIILRPG 501
Query: 505 VDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKEMGPVR 563
+ ED+ FCR K+ Y +P+ I F P T TGKIQK +R E ++
Sbjct: 502 ATLT-----EEDVRDFCRGKIAHYKIPRYIRFVDEFPMTVTGKIQKFKMREMMIEELGLQ 556
Query: 564 KSK 566
+K
Sbjct: 557 AAK 559
|
Length = 559 |
| >gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | Back alignment and domain information |
|---|
Score = 158 bits (401), Expect = 3e-42
Identities = 155/547 (28%), Positives = 228/547 (41%), Gaps = 78/547 (14%)
Query: 26 LDRAATVHPTRTSVV--HGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAI 83
L RAAT P ++V R T+ + R +A+ L R + VA++APN
Sbjct: 7 LRRAATRAPDACALVDPARGLRLTYSELRARVEGVAARLHARGVRPQQRVAVVAPNSVDA 66
Query: 84 YEAHFGVPMAGAVLNAVNIRLNAPTIAFLL--GHSASAVIMVDQEYFKLAEEALKIMEEK 141
A + GAV +N RL IA L+ G +AVI VD +A+
Sbjct: 67 VIALLALHRLGAVPALMNPRLKPAEIAELIKRGEMTAAVIAVD----AQVMDAI------ 116
Query: 142 SNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALG 201
++ +GD ++ P + P + E Q +
Sbjct: 117 -FQSGSGVRVLALGDLVGL----------------GEPESAGPPIEDPPREPE-QPAFVF 158
Query: 202 YTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGA--VYLWTLPMFHCNGWCYTWSLA- 258
YTSGTT PKG V+ R A L ++ G+ G V L +P++H G+ A
Sbjct: 159 YTSGTTGLPKGAVIPQRAAESRVLFMSTQAGLRHGRHNVVLGLMPLYHVIGFFAVLVAAL 218
Query: 259 ALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTA 318
AL GT + + + I + VT A P L+++ A +E L L + HV A
Sbjct: 219 ALDGTYVVVEEFDPADALKLIEQERVTSLFATPTHLDALAAA-AEGAPLKLDSLEHVTFA 277
Query: 319 GAAPPPSVLHAMSQKGFHV----THTYGLSETYGPSTVCAWKPEWDSL---PPETQARMK 371
GA P +VL ++Q H+ + YG +E +SL P T M
Sbjct: 278 GATMPDAVLERVNQ---HLPGEKVNIYGTTEAM------------NSLYMRDPRTGTEM- 321
Query: 372 ARQG----VRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETF 427
R G VR + I + +P +G+ +V + + GYL P+A E
Sbjct: 322 -RPGFFSEVRIVR------IGGSPDEALP-NGEEGELVVAAADATFTGYLNQPQATAEKL 373
Query: 428 ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARA 487
+GWY T D+ V P + I R D+IISGGENI EVE ++ P V E V+
Sbjct: 374 QDGWYRTSDVAVVDPSGTVRILGRVDDMIISGGENIHPSEVERVLGRAPGVTEVVVIGLP 433
Query: 488 DERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRA-KMPAYWVPKSIVF-GPLPKTATG 545
DERWG+S A V + S A+ + FCRA ++ + P+ F LPK A
Sbjct: 434 DERWGQSVTACVVPREGETLS-----ADALDTFCRASELADFKRPRRYFFLDELPKNAMN 488
Query: 546 KIQKHVL 552
K+ + L
Sbjct: 489 KVLRRQL 495
|
CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495 |
| >gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 154 bits (391), Expect = 2e-41
Identities = 111/373 (29%), Positives = 161/373 (43%), Gaps = 46/373 (12%)
Query: 200 LGYTSGTTASPKGVVLSHR------GAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCY 253
L YTSGTT PKG + HR + G V+ WT P W +
Sbjct: 93 LIYTSGTTGPPKGALHGHRVLLGHLPGVELYFE----LAPRPGDVF-WT-PA----DWAW 142
Query: 254 TWSL------AALCGTSIC---LRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSED 304
L A G + +++ + ++ + +YGVT+ P L + SE
Sbjct: 143 IGGLLDVLLPALYFGVPVVAYRMQRFDPERAFALMRRYGVTNAFLPPTALKMMRRVGSER 202
Query: 305 TILPLPHVVHVNTAGAAPPPSVLH-AMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLP 363
L + V + G + +L A + G V YG +E CA
Sbjct: 203 ARYDL-RLRAVASGGESLGEELLEWARDELGLTVNEFYGQTEANLVVGNCA---ALGPAR 258
Query: 364 PETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEI-VMSGN-VVMKGYLKNPK 421
P + + G + V+D +PVP +GEI V + V+ GY NP+
Sbjct: 259 PGSMGK--PVPGHE------VAVVDDA-GRPVPPG--EVGEIAVKRPDPVMFLGYWNNPE 307
Query: 422 ANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEA 481
A FA W TGDLG + D Y+ K R+ D+I S G I E+E + HPAVLEA
Sbjct: 308 ATAAKFAGDWLLTGDLGRRDADGYLWFKGRADDVIKSSGYRIGPAEIEECLLKHPAVLEA 367
Query: 482 SVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LP 540
+VV D GE AFV L V+ S+E LA ++ + ++++ A+ P+ I F LP
Sbjct: 368 AVVGVPDPERGEIVKAFVVLAEGVEPSDE--LATELQELVKSRLAAHEYPREIEFVDELP 425
Query: 541 KTATGKIQKHVLR 553
T TGKI++ LR
Sbjct: 426 MTTTGKIRRRELR 438
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439 |
| >gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 155 bits (394), Expect = 5e-41
Identities = 143/586 (24%), Positives = 210/586 (35%), Gaps = 79/586 (13%)
Query: 26 LDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYE 85
L R AT+ + G+ R T + LA+ L + + G VAI A N E
Sbjct: 13 LTRLATLRGNAVVTISGNRRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLE 72
Query: 86 AHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGR 145
V AG ++ +N R + + SA+++V E EE N R
Sbjct: 73 WLLAVACAGGIVAPLNYRWS-------FEEAKSAMLLVRPVMLVTDETCSSWYEELQNDR 125
Query: 146 FKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQT--------GDPQFD--WKPPQDEW 195
+ V + + FL T G + D W P
Sbjct: 126 LPSLMWQVFLESPSS---------SVFIFLNSFLTTEMLKQRALGTTELDYAWAP----- 171
Query: 196 QSIAL-GYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYT 254
L +TSGTT PKGV +SH + SL+ I G E VYL T P+ H G
Sbjct: 172 DDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSA 231
Query: 255 WSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVH 314
++ + + L + AKA AI ++ VT P ++ +++ + + V
Sbjct: 232 LAMLMVGACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMTWKVFPSVR 291
Query: 315 VNTAGAAPPPSVLHAMSQKGF---HVTHTYGLSETYGPSTVCA-WKPEWDSLPPETQARM 370
G S L ++K F + YG++E T P +S Q
Sbjct: 292 KILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVN 351
Query: 371 KARQGVRFIGLEKLDVIDTRTQQPV------PA----------DGKTIGEIVMSGNVVMK 414
+ + QP PA + +G I+ G VM
Sbjct: 352 QTKSSS--------------VHQPQGVCVGKPAPHVELKIGLDESSRVGRILTRGPHVML 397
Query: 415 GYLKNPKAN-EETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMY 473
GY +GW TGD+G + + RS D I +GGEN+ EVE ++
Sbjct: 398 GYWGQNSETASVLSNDGWLDTGDIGWIDKAGNLWLIGRSNDRIKTGGENVYPEEVEAVLS 457
Query: 474 LHPAVLEASVVARADERWGESPCAFVTLK---------PEVDKSNEQQLAEDIMKFCRAK 524
HP V VV D R E A V L+ E K N +E + CR K
Sbjct: 458 QHPGVASVVVVGVPDSRLTEMVVACVRLRDGWIWSDNEKENAKKNLTLSSETLRHHCREK 517
Query: 525 -MPAYWVPKSIVF--GPLPKTATGKIQKHVLRAKAKEMGPVRKSKL 567
+ + +PK V P P T TGKI++ +R + S L
Sbjct: 518 NLSRFKIPKLFVQWRKPFPLTTTGKIRRDEVRREVLSHLQSLPSNL 563
|
Length = 563 |
| >gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 152 bits (386), Expect = 4e-40
Identities = 146/572 (25%), Positives = 237/572 (41%), Gaps = 94/572 (16%)
Query: 8 DDLPKNAANYMALTPLWFLDRAATVHPTRTSVVHGSTR-YTWLQTYQRCRRLASALCKRS 66
DDL A Y T L F G R Y++L+ + R A+
Sbjct: 14 DDL---ADVYGHKTALIFESSG------------GVVRRYSYLELNEEINRTANLFYSLG 58
Query: 67 IGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQE 126
I G VA+ N P FG+ GA++ +N RL A++L +S +++++ +
Sbjct: 59 IRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQ 118
Query: 127 YFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQF 186
++ + + I +E + P I + + P D G + +
Sbjct: 119 FYPMYRQ---IQQEDAT----PLRHICLTRVA-LPAD------DGVSSFTQLKAQQPATL 164
Query: 187 DWKPPQDEWQSIALGYTSGTTASPKGVVLSHR----GAYLMSLSVALIWGMNEGAVYLWT 242
+ PP + + +TSGTT+ PKGVV++H Y + AL + VYL
Sbjct: 165 CYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCAL----RDDDVYLTV 220
Query: 243 LPMFHCNGWCYTWSLAALC--GTSICLRQVTAKAVYSAIAKY--GVTHFCAAPVVLNSIV 298
+P FH + C T ++AA T + L + +A+A + + KY +T C ++ +V
Sbjct: 221 MPAFHIDCQC-TAAMAAFSAGATFVLLEKYSARAFWGQVCKYRATITE-CIPMMIRTLMV 278
Query: 299 NAPSED----TILPLPHVVHVNTAGAAPPPSVLHAMSQKGFHVT--HTYGLSETYG---- 348
PS + + + ++++ A ++ F V +YG++ET
Sbjct: 279 QPPSANDRQHCLREVMFYLNLSDQEK-------DAFEER-FGVRLLTSYGMTETIVGIIG 330
Query: 349 --PSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIV 406
P K W S+ R G E ++ D + P+PA IGEI
Sbjct: 331 DRPGD----KRRWPSI---------GRPG---FCYEA-EIRDDHNR-PLPAG--EIGEIC 370
Query: 407 MS---GNVVMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGEN 462
+ G + K Y +PKA + A+GW HTGD G + + DR ++I GGEN
Sbjct: 371 IKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDEEGFFYFVDRRCNMIKRGGEN 430
Query: 463 ISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCR 522
+S VE+EN++ HP + + VV D E+ AFV L E E+ FC
Sbjct: 431 VSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNE-----GETLSEEEFFAFCE 485
Query: 523 AKMPAYWVPKSIVF-GPLPKTATGKIQKHVLR 553
M + VP + LP+ +GKI K L+
Sbjct: 486 QNMAKFKVPSYLEIRKDLPRNCSGKIIKKNLK 517
|
Length = 517 |
| >gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases | Back alignment and domain information |
|---|
Score = 150 bits (382), Expect = 6e-40
Identities = 89/323 (27%), Positives = 135/323 (41%), Gaps = 55/323 (17%)
Query: 202 YTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAALC 261
YTSGTT +PKGV+L+HR + ++ + ++ G L LP+ H L
Sbjct: 95 YTSGTTGNPKGVMLTHRNLLAQAAALLEVIPLSPGDRVLSFLPLAHVFEQRLGEYLPLSS 154
Query: 262 GTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSE-------------DTILP 308
G + + + + + + + T F A P V I L
Sbjct: 155 GARVNFAE-SPETLLEDLREVRPTVFFAVPRVWEKIYAGIEAKVAAAGPLKRKLFRWALG 213
Query: 309 LPHVVHVNTAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQA 368
+ + GA PP VL G + YGL+ET G +TV +P
Sbjct: 214 GGRLRFAVSGGAPLPPEVLEFFRALGIPILEGYGLTETSGVATV--NRPG---------- 261
Query: 369 RMKARQGVRF--IGLEKLDVIDTRTQQPVP-ADGKTI--GEIVMSGNVVMKGYLKNPKAN 423
+R +G +P+P + + GEI++ G VMKGY KNP+A
Sbjct: 262 ------DIRIGTVG------------KPLPGVEVRIAEDGEILVRGPNVMKGYYKNPEAT 303
Query: 424 EETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIII-SGGENISSVEVENMMYLHPAVLEA 481
E +GW HTGD+G D ++ I DR KD+I+ +GG+NI+ +EN + P + +A
Sbjct: 304 AEALDEDGWLHTGDIGRLDEDGFLVITDRKKDLIVTAGGKNIAPQPIENALKASPYISQA 363
Query: 482 SVVARADERWGESPCAFVTLKPE 504
VV A + L PE
Sbjct: 364 VVVGDDRPYLT----ALIVLDPE 382
|
This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456 |
| >gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 150 bits (380), Expect = 3e-39
Identities = 140/524 (26%), Positives = 213/524 (40%), Gaps = 67/524 (12%)
Query: 53 QRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFL 112
QR R A L + G VA++ N A +EA + GA VN IA++
Sbjct: 19 QRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYI 78
Query: 113 LGHSASAVIMVDQEYFKLAEEAL----KIMEEKSNGRFKPPLLIV---IGDESCDPKDLK 165
L S + V++ + AL ++ + PP + I P
Sbjct: 79 LEDSGARVLIAHADLLHGLASALPAGVTVLSVPT-----PPEIAAAYRISPALLTPPA-- 131
Query: 166 YALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSL 225
GA+++E +L +P + P Q ++ YTSGTT PKGV R A
Sbjct: 132 -----GAIDWEGWLAQQEP---YDGPPVP-QPQSMIYTSGTTGHPKGV---RRAAPTPEQ 179
Query: 226 S------VALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAALCGTSICLRQVTAKAVYSAI 279
+ ALI+G+ G L T P++H Y L G + + + + I
Sbjct: 180 AAAAEQMRALIYGLKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQPRFDPEELLQLI 239
Query: 280 AKYGVTHFCAAPVVLNSIVNAPSE-----DTILPLPHVVHVNTAGAAP-PPSVLHAMSQK 333
++ +TH P + ++ P E D L HV+H AAP P V AM +
Sbjct: 240 ERHRITHMHMVPTMFIRLLKLPEEVRAKYDVS-SLRHVIH----AAAPCPADVKRAMIEW 294
Query: 334 -GFHVTHTYGLSETYGPSTVCAWKPEWDSLP-PETQARMKARQGVRFIGLEKLDVIDTRT 391
G + YG +E+ G T E D+L P T + +RF+ +
Sbjct: 295 WGPVIYEYYGSTES-GAVTFAT--SE-DALSHPGTVGKAAPGAELRFVDEDG-------- 342
Query: 392 QQPVPADGKTIGEIVMSGNVVMK-GYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKD 450
+P+P IGEI Y P+ E G+ +GD+G D Y+ + D
Sbjct: 343 -RPLPQG--EIGEIYSRIAGNPDFTYHNKPEKRAEIDRGGFITSGDVGYLDADGYLFLCD 399
Query: 451 RSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNE 510
R +D++ISGG NI E+E +++ P V + +V D +GE+ A V +P
Sbjct: 400 RKRDMVISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGEALMAVVEPQPGATLD-- 457
Query: 511 QQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLR 553
DI +A++ Y VPK I LP+ +GKI K LR
Sbjct: 458 ---EADIRAQLKARLAGYKVPKHIEIMAELPREDSGKIFKRRLR 498
|
Length = 509 |
| >gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 147 bits (373), Expect = 7e-39
Identities = 104/372 (27%), Positives = 154/372 (41%), Gaps = 38/372 (10%)
Query: 198 IALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCN----GWC- 252
I L +TSGTT PK V+ +H + LS G+ G + H N GW
Sbjct: 87 ILLYFTSGTTGLPKLVLHTHVSYPVGHLSTMYWIGLQPGDI--------HLNISSPGWAK 138
Query: 253 YTWS------LAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTI 306
+ WS A I + A+ A+ K+GVT FCA P V +
Sbjct: 139 HAWSSFFAPWNAGATVFGINYPRFDARRYLGALEKFGVTTFCAPPTVWRMFIQQDLAQYD 198
Query: 307 LPLPHVVHVNTAGAAPPPSVLHAMSQK-GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPE 365
+ L V +AG P V+ + + G + YG +ET T + P
Sbjct: 199 VRLREAV---SAGEPLNPEVIERVKKAWGLTIRDGYGQTET----TAMIGNSPGQKVKPG 251
Query: 366 TQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEE 425
+ R V + E ++ T + + + IG +M GY+ +P+
Sbjct: 252 SMGRPLPGYRVVLLDDEGKEIPVTEGEIALDLGDRPIG--------LMLGYMGDPEKTAA 303
Query: 426 TFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVA 485
F G+Y TGD + D Y+ R+ D+ S IS EVE+ + HPAV EA+VV
Sbjct: 304 AFRGGYYRTGDKAYRDEDGYLWFVGRADDVFKSSDYRISPFEVESALLEHPAVAEAAVVP 363
Query: 486 RADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTAT 544
D P A++ LKP + S E LA ++ R ++ Y + I F LPKT +
Sbjct: 364 SPDPIRLAVPKAYIVLKPGYEPSRE--LALELFAHVRERLAPYKRIRRIEFVGELPKTIS 421
Query: 545 GKIQKHVLRAKA 556
GKI++ LR
Sbjct: 422 GKIRRVELRKIE 433
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433 |
| >gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 149 bits (378), Expect = 8e-39
Identities = 138/537 (25%), Positives = 215/537 (40%), Gaps = 47/537 (8%)
Query: 28 RAATVHPTRTSVV--HGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYE 85
+ A P + +VV HG+ YT+ RLA+ L + I G VA P
Sbjct: 31 QTARAMPDKIAVVDNHGA-SYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTI 89
Query: 86 AHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGR 145
+ GAV + + ++L + + + + L I+ ++
Sbjct: 90 IYLACLKVGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDL-ILPLQNQLP 148
Query: 146 FKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSG 205
++ V D K A ++ + + +P + A+ +TSG
Sbjct: 149 QLQQIVGV---------D-KLAPATSSLSLSQIIADYEP-LTTAITTHGDELAAVLFTSG 197
Query: 206 TTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAALCGTSI 265
T PKGV+L+H + + V++ P+ H G+ + + L G
Sbjct: 198 TEGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGHATGFLHGVTAPFLIGARS 257
Query: 266 CLRQV-TAKAVYSAIAKYGVT-HFCAAPVV---LNSIVNAPSEDTILPLPHVVHVNTAGA 320
L + T A + + + T A P + LN + P++ + L G
Sbjct: 258 VLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQPADLSALRF------FLCGG 311
Query: 321 APPPSVLHAMSQKGFHVTHTYGLSETYGPSTVC--AWKPEWDSLPPETQARMKARQGVRF 378
P + Q+ L YG + A D L R G
Sbjct: 312 TTIPKKVARECQQ-----RGIKLLSVYGSTESSPHAVVNLDDPLS-----RFMHTDGYAA 361
Query: 379 IGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETF-ANGWYHTGDL 437
G+E + V+D ++ +P + GE G V GYL P+ GWY++GDL
Sbjct: 362 AGVE-IKVVD-EARKTLPPGCE--GEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDL 417
Query: 438 GVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCA 497
YI+I R KDII+ GGENISS EVE+++ HP + +A VVA DER GE CA
Sbjct: 418 CRMDEAGYIKITGRKKDIIVRGGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCA 477
Query: 498 FVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLR 553
+V LK + L E + F R ++ Y P+ IV LP+TA+GKIQK +LR
Sbjct: 478 YVVLKAPH---HSLTLEEVVAFFSRKRVAKYKYPEHIVVIDKLPRTASGKIQKFLLR 531
|
Length = 547 |
| >gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Score = 148 bits (376), Expect = 1e-38
Identities = 157/540 (29%), Positives = 239/540 (44%), Gaps = 87/540 (16%)
Query: 46 YTWLQTYQRCRRLASALCKRSIGL--GCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIR 103
T+ + + RR A AL RS+GL G V ++ PN+ G+ AG V + N
Sbjct: 56 VTYGEVVRDTRRFAKAL--RSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGGVFSGAN-- 111
Query: 104 LNAPTIAFLLGHSASAVIMVDQEYFKLAEEA---LKIMEEKSNGRFKPPLL--IVIGDES 158
PT ++ E K AE A L + + + G+ K L IV+G+E
Sbjct: 112 ---PT-------------ALESEIKKQAEAAGAKLIVTNDTNYGKVKGLGLPVIVLGEEK 155
Query: 159 CDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQS--IALGYTSGTTASPKGVVLS 216
+ GAV +++ L+ D D ++ Q+ AL ++SGTT KGV+L+
Sbjct: 156 IE----------GAVNWKELLEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLT 205
Query: 217 HRG--AYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAALCGTSICLRQVTAKA 274
HR A L S ++ M V L +P FH G T IC + K
Sbjct: 206 HRNLVANLCSSLFSVGPEMIGQVVTLGLIPFFHIYGI-----------TGICCATLRNKG 254
Query: 275 VYSAIAKYGVTHFCAA-------------PVVLNSIVNAPSEDTILPLPHVVHVNTAGAA 321
++++ + F A P++LN + N E+ L + + TA A
Sbjct: 255 KVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPIVEEFDLSKLKLQAIMTAAAP 314
Query: 322 PPPSVLHAMSQK--GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFI 379
P +L A K G V YGL+E C D PE + + V FI
Sbjct: 315 LAPELLTAFEAKFPGVQVQEAYGLTEH-----SCITLTHGD---PEKGHGIAKKNSVGFI 366
Query: 380 GLEKLDV--IDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETF-ANGWYHTGD 436
L L+V ID T + +P + T GE+ + VM+GY N + + T +GW HTGD
Sbjct: 367 -LPNLEVKFIDPDTGRSLPKN--TPGELCVRSQCVMQGYYNNKEETDRTIDEDGWLHTGD 423
Query: 437 LGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPC 496
+G D I I DR K++I G ++ E+E ++ HP+V +A+VV DE GE P
Sbjct: 424 IGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEIPA 483
Query: 497 AFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLRAK 555
A V + P+ +S EDI+ F A + Y + + F +PK+ +GKI + +L+ K
Sbjct: 484 ACVVINPKAKESE-----EDILNFVAANVAHYKKVRVVQFVDSIPKSLSGKIMRRLLKEK 538
|
Length = 546 |
| >gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Score = 148 bits (376), Expect = 1e-38
Identities = 124/411 (30%), Positives = 182/411 (44%), Gaps = 61/411 (14%)
Query: 171 GAVEYEKF--LQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRG-AYLMSLSV 227
+E+ KF L D F KP + A+ Y+SGTT + KGVVL+HR ++ L V
Sbjct: 172 KRIEFPKFYELIKEDFDFVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFV 231
Query: 228 ALIWGMNEGA----VYLWTLPMFHCNGWC-YTWSLAALCGTSICLRQVTAKAVYSAIAKY 282
E VYL LPMFH G + L +L T + +R+ A + I ++
Sbjct: 232 RFEASQYEYPGSDNVYLAALPMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRF 291
Query: 283 GVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQKGF------- 335
VTHF P +L ++ L + V+ GAAP +S K
Sbjct: 292 KVTHFPVVPPILMALTKKAKGVCGEVLKSLKQVSC-GAAP-------LSGKFIQDFVQTL 343
Query: 336 -HV--THTYGLSE-----TYGPSTVCAWKPEWDS---LPPETQARMKARQGVRFIGLEKL 384
HV YG++E T G +T K + S L P QA+
Sbjct: 344 PHVDFIQGYGMTESTAVGTRGFNTEKLSK--YSSVGLLAPNMQAK--------------- 386
Query: 385 DVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFAN-GWYHTGDLGVKHPD 443
V+D T +P GE+ + G VMKGYL NPKA + T GW TGD+ D
Sbjct: 387 -VVDWSTGCLLPPGNC--GELWIQGPGVMKGYLNNPKATQSTIDKDGWLRTGDIAYFDED 443
Query: 444 NYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKP 503
Y+ I DR K+II G I+ ++E ++ HP +++A+V A D+ GE P AFV +
Sbjct: 444 GYLYIVDRLKEIIKYKGFQIAPADLEAVLISHPEIIDAAVTAVPDKECGEIPVAFVVRRQ 503
Query: 504 EVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLR 553
S E ++ + ++ Y + +VF +PK+ GKI + L+
Sbjct: 504 GSTLSQEA-----VINYVAKQVAPYKKVRKVVFVQSIPKSPAGKILRRELK 549
|
Length = 560 |
| >gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Score = 147 bits (374), Expect = 3e-38
Identities = 161/591 (27%), Positives = 245/591 (41%), Gaps = 127/591 (21%)
Query: 15 ANYMALTPLWFLDRAATVHPTRTSVVHGST--RYTWLQTYQRCRRLASALCKRSIGLGCT 72
N++ L F +R + R ++ G+T YT+ RR+A+ L K I G
Sbjct: 20 PNHLPLHDYCF-ERLSEF-SDRPCLIDGATGRVYTYADVELLSRRVAAGLHKLGIRQGDV 77
Query: 73 VAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYF-KLA 131
V ++ PN P A G GAV N IA S + +I+ Y KL
Sbjct: 78 VMLLLPNCPEFVLAFLGASRRGAVTTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKLK 137
Query: 132 EEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGD---PQFDW 188
A + +V D DP + G + + + Q + P+ +
Sbjct: 138 GLA-----------EDDGVTVVTID---DPPE-------GCLHFSELTQADENELPEVEI 176
Query: 189 KPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVA-LIWG------MNEGAVYLW 241
P D+ +AL Y+SGTT PKGV+L+H+G + SVA + G + V L
Sbjct: 177 SP--DD--VVALPYSSGTTGLPKGVMLTHKG---LVTSVAQQVDGENPNLYFHSDDVILC 229
Query: 242 TLPMFHCNGWCYTWSLAALCG-----TSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNS 296
LPMFH Y+ + LCG + + + A+ I ++ VT P ++ +
Sbjct: 230 VLPMFHI----YSLNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLA 285
Query: 297 IVNAPSEDTILPLPHVVHVNTAGAAP-------------PPSVLHAMSQKGFHVTHTYGL 343
I +P + L + V +GAAP P +VL YG+
Sbjct: 286 IAKSPVVEK-YDLSSIRMV-LSGAAPLGKELEDAFRAKLPNAVL----------GQGYGM 333
Query: 344 SETYGPSTVCAWKPEWDSLPPETQ----------ARMKARQGVRFIGLEKLDVIDTRT-- 391
+E GP V A + P + A +K ++D T
Sbjct: 334 TEA-GP--VLAMCLAFAKEPFPVKSGSCGTVVRNAELK--------------IVDPETGA 376
Query: 392 ----QQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYI 446
QP GEI + G +MKGYL +P+A T +GW HTGD+G D+ +
Sbjct: 377 SLPRNQP--------GEICIRGPQIMKGYLNDPEATANTIDKDGWLHTGDIGYIDDDDEL 428
Query: 447 EIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVD 506
I DR K++I G ++ E+E ++ HP++ +A+VV DE GE P AFV
Sbjct: 429 FIVDRLKELIKYKGFQVAPAELEALLISHPSIADAAVVPMKDEVAGEVPVAFVV------ 482
Query: 507 KSNEQQLAEDIMKFCRAKMPAYWVPKSIVF--GPLPKTATGKIQKHVLRAK 555
+SN ++ ED +K AK ++ VF +PK +GKI + LRAK
Sbjct: 483 RSNGSEITEDEIKQFVAKQVVFYKRIHKVFFVDSIPKAPSGKILRKDLRAK 533
|
Length = 537 |
| >gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Score = 147 bits (372), Expect = 3e-38
Identities = 159/572 (27%), Positives = 238/572 (41%), Gaps = 81/572 (14%)
Query: 8 DDLPKNAANYMALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSI 67
D L K AA+Y L F DR T YT L+ A+AL +
Sbjct: 25 DLLSKAAADYGPRPALEFRDRPIT--------------YTELEAM--AETAAAALLRAGY 68
Query: 68 GLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSAS---AVIMVD 124
G +VA+ N P FG AGA + + L+ L H S A +++
Sbjct: 69 GKDASVALYLGNTPDHPINFFGALKAGARV----VHLSPLDGERALSHKLSDSGARLLIT 124
Query: 125 QEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDES------------CDPKDLKYALGRGA 172
+ L ALK +E+ R LIV D++ DP+
Sbjct: 125 SDLAALLPMALKFLEKGLLDR-----LIVCEDDNWGKVGTPQAPIPADPR---------I 170
Query: 173 VEYEKFLQTGDPQFDWKPPQDEWQSIA-LGYTSGTTASPKGVVLSHRGAYLMSLSVALIW 231
V Y F++ +W P +A L YT GTT PKG +L+H G ++S+ +W
Sbjct: 171 VTYADFVKGAAAPAEW--PAVTPDDVALLQYTGGTTGLPKGAMLTH-GNLTSAVSIYDVW 227
Query: 232 GM----NEGAVY--LWTLPMFHCNGWCYTWSLAALCGTSICLRQ-VTAKAVYSAIAKYGV 284
G G V + LP+FH + G I L Q AV+ I +
Sbjct: 228 GKPSRATRGDVERVICVLPLFHIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRA 287
Query: 285 THFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQK-GFHVTHTYGL 343
T F P + ++ N PS + L + + + GA P V + +K G + +G+
Sbjct: 288 TVFPGVPTMWIALANDPSLEK-RDLSSLATIGSGGAPLPVEVANFFERKTGLKLKSGWGM 346
Query: 344 SETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVID-TRTQQPVPADGKTI 402
+ET P T PPE + G+ G+E LDV+ + +P +
Sbjct: 347 TETCSPGT---------GHPPEGPDK-PGSIGLMLPGIE-LDVVSLDDPTKVLPPG--EV 393
Query: 403 GEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGEN 462
GE+ + G V +GY P+ + E F + TGD+G D Y + DR KD+IISGG N
Sbjct: 394 GELRIRGPNVTRGYWNRPEESAEAFVGDRFLTGDIGYMDTDGYFFLVDRKKDMIISGGFN 453
Query: 463 ISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCR 522
+ +E +Y HP V E V+ D+ GE+ AFV L+P + +L F
Sbjct: 454 VYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAKAFVKLRPGAKPFSLDELRA----FLA 509
Query: 523 AKMPAYWVPKSIVF-GPLPKTATGKIQKHVLR 553
K+ + +P ++ F LP+T GK+ +H LR
Sbjct: 510 GKLGKHELPVAVEFVDELPRTPVGKLSRHELR 541
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541 |
| >gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 5e-37
Identities = 106/372 (28%), Positives = 161/372 (43%), Gaps = 41/372 (11%)
Query: 199 ALGYTSGTTASPKGVVLSHR-----GAYLMSLSVAL-----IWGMNEGAVYLWTLPMFHC 248
A YTSGTT PKGV + AY M ++ L W + + W ++
Sbjct: 92 AQMYTSGTTGLPKGVPVPLNALAAFYAY-MRYAIDLRDDDVFWNIADPG---WAYGLY-- 145
Query: 249 NGWCYTWSLAALCGTSICLRQV--TAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTI 306
+ T LA G + + TA+ Y + + GVT+F +P ++ A ++
Sbjct: 146 --YAITGPLAM--GITTVFLEGGFTAENTYDVLERLGVTNFAGSPTAYRMLMAAGADAAA 201
Query: 307 LPLPHVVHVNTAGAAPPPSVLHAMSQK-GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPE 365
+ ++AG P V+ G + YG +ET V
Sbjct: 202 RIKLKLRVASSAGEPLNPEVVRWFQANLGVTIHDHYGQTET--GMPVGN----------H 249
Query: 366 TQARMKARQGVRFIGLE--KLDVIDTRTQQPVP-ADGKTIGEIVMSGNVVMKGYLKNPKA 422
+ R G + L ++ V+D Q G+ ++ S + GY +P+
Sbjct: 250 HALAHEVRAGSMGLPLPGYRIAVLDDDGQPLADGEPGQLAIDVASSPLLWFSGYWDDPEK 309
Query: 423 NEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEAS 482
E A WY TGDL + D Y R+ D+IIS G I +VE+ + HPAV EA+
Sbjct: 310 TAELIAGRWYVTGDLVERDEDGYFWFIGRADDVIISAGYRIGPFDVESALLEHPAVAEAA 369
Query: 483 VVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPK 541
VV D GE AFV LK S+E LAE++ F + ++ A+ P+ + F P LPK
Sbjct: 370 VVGVPDPLRGEIVKAFVVLKEGYAGSDE--LAEELQLFVKKRLSAHAYPREVEFVPALPK 427
Query: 542 TATGKIQKHVLR 553
T +GKIQ+ +LR
Sbjct: 428 TPSGKIQRFLLR 439
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440 |
| >gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes | Back alignment and domain information |
|---|
Score = 140 bits (356), Expect = 2e-36
Identities = 93/384 (24%), Positives = 148/384 (38%), Gaps = 59/384 (15%)
Query: 202 YTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAALC 261
YTSGTT PK ++SHR + + V LP++H N WS A
Sbjct: 88 YTSGTTGLPKAAIMSHRRWLRAGAVFGGLGLLKPDDVLYLCLPLYHSNALTVGWSSALAA 147
Query: 262 GTSICL-RQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPS--EDTILPLPHVVHVNTA 318
G S+ L R+ +A + + +YG T F + ++N P +D PL ++
Sbjct: 148 GASLALRRKFSASQFWPDVRRYGATAFQYVGELCRYLLNQPEKPDDRDHPLRKII----- 202
Query: 319 GAAPPPSVLHAMSQKGFHVTHTYGLSETYGPS---TVCAWKPEWDSLPPETQARMKARQG 375
G P + ++ F V E YG + P
Sbjct: 203 GNGLRPDIWDEFKER-FGVPRIV---EFYGSTEGNVGFINLFNK----PGA--------- 245
Query: 376 VRFIGLEKLDVI--DTRTQQPV-PADGK-------TIGEIVMSGNVVMK--GYLKNPKAN 423
V + + V+ D T++P+ A+G +G ++ GY +
Sbjct: 246 VGRLPPAAIAVVKYDVETEEPIRDANGFCIKVPPGEVGLLLGEITDRNPFDGYTDDEATE 305
Query: 424 EETFAN------GWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPA 477
++ + +++TGDL + Y DR D GEN+S+ EVE ++ HP
Sbjct: 306 KKILRDVFKKGDAYFNTGDLVRRDGFGYFYFVDRLGDTFRWKGENVSTTEVEEVLAKHPG 365
Query: 478 VLEASV----VARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKS 533
V EA+V V + R G A +TL P + Q A + + ++PAY P
Sbjct: 366 VEEANVYGVEVPGTEGRAG---MAALTLAPGAA-FDPQAFAAHLDE----QLPAYARPLF 417
Query: 534 I-VFGPLPKTATGKIQKHVLRAKA 556
+ V + T T K QK LR +
Sbjct: 418 LRVQAAMETTGTFKYQKTDLRKEG 441
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444 |
| >gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family | Back alignment and domain information |
|---|
Score = 139 bits (351), Expect = 2e-35
Identities = 142/559 (25%), Positives = 221/559 (39%), Gaps = 89/559 (15%)
Query: 24 WFLDR-AATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCT--VAIIAPNI 80
LDR +T+ + + ++ + + RRL +AL R +G+ V ++ +
Sbjct: 8 DLLDRNVVEGRGGKTAFIDDISSLSYGELEAQVRRLGAAL--RRLGVKREERVLLLMLDG 65
Query: 81 PAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEE 140
A G AG V A+N L A A++L S + V+ V E + + AL
Sbjct: 66 VDFPIAFLGAIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKSPH 125
Query: 141 KSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQ-DE---WQ 196
+ +V+G G V+ + L T QF Q D+ W
Sbjct: 126 LEH-------RVVVGRPE-----------AGEVQLAELLATESEQFKPAATQADDPAFWL 167
Query: 197 SIALGYTSGTTASPKGVVLSHRGAYLMS-LSVALIWGMNEGAVYLWTLPMFHC----NGW 251
Y+SG+T PKGVV +H Y + L G+ E V +F N
Sbjct: 168 -----YSSGSTGMPKGVVHTHSNPYWTAELYARNTLGIREDDVVFSAAKLFFAYGLGNAL 222
Query: 252 CYTWSLAALCGTSICL-RQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLP 310
+ S+ A T++ + + T AV+ + ++ T F P + +++ P+ +
Sbjct: 223 TFPMSVGA---TTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPNLPAEDQVR 279
Query: 311 HVVHVNTAGAAPPPSVLHAMSQKGFHVTHTYGLSET---------------YGPSTVCAW 355
+ +AG A P V Q F V G+ T YG S
Sbjct: 280 LRLCT-SAGEALPAEVGQRW-QARFGVDIVDGIGSTEMLHIFLSNLPGDVRYGTSG---- 333
Query: 356 KPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKG 415
KP P + R+ G Q V A GE+++SG
Sbjct: 334 KP-----VPGYRLRLVGDGG-----------------QDVAAG--EPGELLISGPSSATM 369
Query: 416 YLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLH 475
Y N +TF W +GD V++ D R+ D++ G +S E+E+ + H
Sbjct: 370 YWNNRAKTRDTFQGEWTRSGDKYVRNDDGSYTYAGRTDDMLKVSGIYVSPFEIESALIQH 429
Query: 476 PAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIV 535
PAVLEA+VV DE P AF+ L+P D L ++ + + ++ Y P+ IV
Sbjct: 430 PAVLEAAVVGVEDEDGLIKPKAFIVLRPGQDID--TALETELKEHVKDRLAPYKYPRWIV 487
Query: 536 F-GPLPKTATGKIQKHVLR 553
F LPKTATGKIQ+ LR
Sbjct: 488 FVDDLPKTATGKIQRFKLR 506
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 3e-35
Identities = 97/378 (25%), Positives = 148/378 (39%), Gaps = 69/378 (18%)
Query: 202 YTSGTTASPKGVVLSHRGAYLMSLSVALIW--GMNEGAVYLWTLPM----FHCNGWCYTW 255
YTSG+T PKGV++ HRG L++L L G+ G L W
Sbjct: 100 YTSGSTGRPKGVMVEHRG--LVNLLAWLQERYGLTAGDRVLQFASFSFDASV---WEIFP 154
Query: 256 SLAALCGTSICL----RQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPH 311
L L G ++ L +A+ + ++ +T P +L ++++A + L
Sbjct: 155 PL--LSGATLVLAPPEVLRDPEALAELLREHRITVLHLVPSLLRALLDALEPAALPSLRL 212
Query: 312 VVHVNTAGAAPPPSVLHAMSQKGFHVT--HTYGLSETYGPSTVCA--WKPEWDSLPPETQ 367
V+ G A P ++ + + YG +ET TV + + D
Sbjct: 213 VI---VGGEALPAELVRRWRELFPGARLVNAYGPTET----TVDVTYHEVDPD---DLDG 262
Query: 368 ARM---KARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANE 424
+ + R + V+D +PVP G GE+ + G V +GYL P+
Sbjct: 263 GSVPIGRPIANTR------VYVLDED-LRPVP-VG-VPGELYIGGAGVARGYLNRPELTA 313
Query: 425 ETF------ANG--WYHTGDLGVKHPDNYIEIKDRSKD-IIISG-----GENISSVEVEN 470
E F G Y TGDL PD +E R+ D + I G G E+E
Sbjct: 314 ERFVPDPFGGPGERLYRTGDLARWLPDGNLEFLGRADDQVKIRGYRIELG------EIEA 367
Query: 471 MMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWV 530
+ HP V EA VVAR D + A+V + A ++ F ++P Y V
Sbjct: 368 ALLAHPGVREAVVVAREDGAGEKRLVAYVVPAAGAELD-----AAELRAFLAERLPDYMV 422
Query: 531 PKSIVFGP-LPKTATGKI 547
P + V LP T GK+
Sbjct: 423 PSAFVVLDALPLTPNGKV 440
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 137 bits (346), Expect = 1e-34
Identities = 140/526 (26%), Positives = 219/526 (41%), Gaps = 75/526 (14%)
Query: 56 RRLASALCKRSIGL--GCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLL 113
R+ A+ L + GL G VA+I P +P + + G V I+L A I + L
Sbjct: 52 RKAANVLSG-ACGLQRGDRVAVILPRVPEWWLVNVACIRTGLVFIPGTIQLTAKDILYRL 110
Query: 114 GHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAV 173
S + I+ E LA I E + + K +++ + S D G +
Sbjct: 111 QASKAKCIVTSDE---LAPAVDSIASECPSLKTK----LLVSEHSRD----------GWL 153
Query: 174 EYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHR---------GAYLMS 224
+++ L+ + + + + +A+ +TSGTT PK SH G Y +
Sbjct: 154 NFKELLKEASTEHTCVKTKSQ-EPMAIYFTSGTTGFPKMAEHSHSSLGLGLKVNGRYWLD 212
Query: 225 LSVA-LIWGMNEGAVYLWTLPMFHCNGWCYT--WSLAA--LCGTSIC---LRQVTAKAVY 276
L+ + ++W M++ GW WSL + + G + L + K +
Sbjct: 213 LTPSDIMWNMSD-------------TGWIKAAIWSLFSPWIQGACVFVHHLPRFDPKVIL 259
Query: 277 SAIAKYGVTHFCAAPVVLNSIVNAPSED-TILPLPHVVHVNTAGAAPPPSVLHA-MSQKG 334
++KY +T FC+AP V +V +D T + H T G P VL +Q G
Sbjct: 260 QTLSKYPITTFCSAPTVYRMLVQ---QDLTSYKFKSLRHCVTGGEPLNPEVLEQWKAQTG 316
Query: 335 FHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDV--IDTRTQ 392
+ YG +ET +CA MK + G DV ID
Sbjct: 317 LDLYEGYGQTET---GLICA-----------NFKGMKIKPGSMGKASPPYDVQIIDDNGN 362
Query: 393 QPVPADGKTIGEIVMSGNVV--MKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKD 450
P IG V Y+ NP+ T +Y TGD G+ D Y
Sbjct: 363 VLPPGTEGDIGIRVKPTRPFCLFSCYVDNPEKTAATIRGDFYITGDRGIMDEDGYFWFVG 422
Query: 451 RSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNE 510
R+ D+I S G I EVE+ + HPAV+E++VV+ D GE AFV L P+ +
Sbjct: 423 RADDVINSSGYRIGPFEVESALIEHPAVVESAVVSSPDPIRGEVVKAFVVLAPQFLSHDP 482
Query: 511 QQLAEDIMKFCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLRAK 555
+QL +++ + ++ Y P+ + F LPKT TGKI+++ LR K
Sbjct: 483 EQLTKELQEHVKSVTAPYKYPRKVEFVQELPKTITGKIKRNELRDK 528
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530 |
| >gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 1e-34
Identities = 137/552 (24%), Positives = 211/552 (38%), Gaps = 64/552 (11%)
Query: 26 LDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYE 85
L+ AA P T++VH T+ +R LAS L + G VAI
Sbjct: 6 LEDAAARLPDATALVHHDRTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVT 65
Query: 86 AHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGR 145
A FG +AG V +N L A +A +L +++ E L AL +
Sbjct: 66 AMFGAALAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRT-- 123
Query: 146 FKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQS--IALGYT 203
LI++GD + + G + K L GD PP S A+ YT
Sbjct: 124 -----LIIVGDPAHASEGHP---GEEPASWPKLLALGDAD----PPHPVIDSDMAAILYT 171
Query: 204 SGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAALCGT 263
SG+T PKGVVLSHR + SVA L LP+ G+ + + T
Sbjct: 172 SGSTGRPKGVVLSHRNLVAGAQSVATYLENRPDDRLLAVLPLSFDYGFNQLTTAFYVGAT 231
Query: 264 SICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNA--PSEDTILPLPHVVHVNTAGAA 321
+ + + V A+ K+G+T A P + + P P + ++ +G A
Sbjct: 232 VVLHDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQLDWPESAA----PSLRYLTNSGGA 287
Query: 322 PPPSVLHAM----SQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVR 377
P + L + + YGL+E + + LPPE R G +
Sbjct: 288 MPRATLSRLRSFLPNARLFL--MYGLTEAFRSTY----------LPPEEVDRRPDSIG-K 334
Query: 378 FIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANGWYH---- 433
I ++ V+ + P + GE+V G +V GY +P+ E F
Sbjct: 335 AIPNAEVLVLREDGSECAPGE---EGELVHRGALVAMGYWNDPEKTAERFRPLPPFPGEL 391
Query: 434 --------TGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVA 485
+GD + + ++ R ++I + G +S EVE + Y V EA
Sbjct: 392 HLPELAVWSGDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAYATGLVAEAVAFG 451
Query: 486 RADERWGESPCAFVT--LKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVF-GPLPKT 542
D G++ VT E+D+ ++ CRA++P Y VP I LP+
Sbjct: 452 VPDPTLGQAIVLVVTPPGGEELDR-------AALLAECRARLPNYMVPALIHVRQALPRN 504
Query: 543 ATGKIQKHVLRA 554
A GKI + L
Sbjct: 505 ANGKIDRKALAK 516
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517 |
| >gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 4e-34
Identities = 134/551 (24%), Positives = 204/551 (37%), Gaps = 50/551 (9%)
Query: 26 LDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYE 85
LD A P +++ + + RLA+ L + + G VA+ PN
Sbjct: 16 LDAHARARPDAVALIDEDRPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVV 75
Query: 86 AHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGR 145
GA + AVN R + +A +LG A +V FK + A + +
Sbjct: 76 LFLACARLGATVIAVNTRYRSHEVAHILG-RGRARWLVVWPGFKGIDFAAILAAVPPDAL 134
Query: 146 FKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSG 205
+ V+ D + V+ P + D L TSG
Sbjct: 135 PPLRAIAVVDDAADATPA---PAPGARVQLFALPDPAPPAAAGERAADPDAGALLFTTSG 191
Query: 206 TTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAALCG--T 263
TT+ PK V+ + ++A +G + GAV L LP C + ++ L AL G
Sbjct: 192 TTSGPKLVLHRQATLLRHARAIARAYGYDPGAVLLAALPF--CGVFGFSTLLGALAGGAP 249
Query: 264 SICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPP 323
+C A A+ ++ VTH +L I++ E P A AP
Sbjct: 250 LVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTAGERA--DFPSARLFGFASFAPA 307
Query: 324 PSVLHAMS-QKGFHVTHTYGLSETYGPSTVCAWKPEWD--------SLPPETQARMKARQ 374
L A++ +G +T YG SE + V P +AR++AR
Sbjct: 308 LGELAALARARGVPLTGLYGSSEVQ--ALVALQPATDPVSVRIEGGGRPASPEARVRAR- 364
Query: 375 GVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETF-ANGWYH 433
D D + DG+ GEI + +M+GYL NP A +G++
Sbjct: 365 ----------DPQDGA----LLPDGE-SGEIEIRAPSLMRGYLDNPDATARALTDDGYFR 409
Query: 434 TGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGE 493
TGDLG D + R D + GG ++ E+E+ + P V A VV R G+
Sbjct: 410 TGDLGYTRGDGQFVYQTRMGDSLRLGGFLVNPAEIEHALEALPGVAAAQVVGA--TRDGK 467
Query: 494 S-PCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVF-GPLPKTATG---KIQ 548
+ P AFV +M CR + + VP + P T + KIQ
Sbjct: 468 TVPVAFVIPTD-----GASPDEAGLMAACREALAGFKVPARVQVVEAFPVTESANGAKIQ 522
Query: 549 KHVLRAKAKEM 559
KH LR A+
Sbjct: 523 KHRLREMAQAR 533
|
Length = 540 |
| >gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 133 bits (338), Expect = 6e-34
Identities = 111/375 (29%), Positives = 157/375 (41%), Gaps = 62/375 (16%)
Query: 202 YTSGTTASPKGVVLSHRG--AYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAA 259
YTSGTT PKGVVLS R A L +L+ A W V + LP+FH +G L
Sbjct: 135 YTSGTTGPPKGVVLSRRAIAADLDALAEA--WQWTADDVLVHGLPLFHVHGLVLG-VLGP 191
Query: 260 L--CGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTIL---------- 307
L + + T +A Y+ G T + P V + I P L
Sbjct: 192 LRIGNRFVHTGRPTPEA-YAQALSEGGTLYFGVPTVWSRIAADPEAARALRGARLLVSGS 250
Query: 308 -PLPHVVHVNTAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCA---WKPEWDSLP 363
LP V A G YG++ET + A +P W LP
Sbjct: 251 AALPVPVFDRLAALT------------GHRPVERYGMTETLITLSTRADGERRPGWVGLP 298
Query: 364 -PETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKA 422
+ R+ G PVP DG+T+GE+ + G + GYL P A
Sbjct: 299 LAGVETRLVDEDGG-----------------PVPHDGETVGELQVRGPTLFDGYLNRPDA 341
Query: 423 NEETF-ANGWYHTGDLGVKHPDNYIEIKDR-SKDIIISGGENISSVEVENMMYLHPAVLE 480
F A+GW+ TGD+ V PD I R S D+I SGG I + E+E + HP V E
Sbjct: 342 TAAAFTADGWFRTGDVAVVDPDGMHRIVGRESTDLIKSGGYRIGAGEIETALLGHPGVRE 401
Query: 481 ASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-L 539
A+VV D+ G+ A+V +V A++++ F ++ + P+ + F L
Sbjct: 402 AAVVGVPDDDLGQRIVAYVVGADDVA-------ADELIDFVAQQLSVHKRPREVRFVDAL 454
Query: 540 PKTATGKIQKHVLRA 554
P+ A GK+ K L +
Sbjct: 455 PRNAMGKVLKKQLLS 469
|
Length = 471 |
| >gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 1e-33
Identities = 138/547 (25%), Positives = 217/547 (39%), Gaps = 78/547 (14%)
Query: 29 AATVHPTRTSVV--HGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEA 86
AA P R +++ G+ Y L ++ LA L + G VA++A N A
Sbjct: 58 AARRAPDRAALIDERGTLTYAELD--EQSNALARGLLALGVRAGDGVAVLARNHRGFVLA 115
Query: 87 HFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRF 146
+ GA + +N + P +A + ++ D E+ L GR
Sbjct: 116 LYAAGKVGARIILLNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSAL-----PPDLGR- 169
Query: 147 KPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGT 206
L G+ D G + + KPP+ I + TSGT
Sbjct: 170 ---LRAWGGNPDDDEPS-----GSTDETLDDLIAGSSTAPLPKPPKPG--GIVI-LTSGT 218
Query: 207 TASPKGVVLSHRGAYLMSL-SVALI-----WGMNEGAVYLWTLPMFHCNGWCYTWSLAAL 260
T +PKG L +A + + E L PMFH GW +LA
Sbjct: 219 TGTPKGAPRPE----PSPLAPLAGLLSRVPFRAGE--TTLLPAPMFHATGWA-HLTLAMA 271
Query: 261 CGTSICLRQV-TAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLP-----HVVH 314
G+++ LR+ +A IAK+ T PV+L+ I++ E +L ++
Sbjct: 272 LGSTVVLRRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPE--VLAKYDTSSLKIIF 329
Query: 315 VNTAGAAPPPSVLHAMSQKGFHVTHTYG--LSETYGPSTVCAW----KPEWDSLPPETQA 368
V +G+A P + +G L YG ST A+ PE + P T
Sbjct: 330 V--SGSALSPELATR-------ALEAFGPVLYNLYG-STEVAFATIATPEDLAEAPGTVG 379
Query: 369 RMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFA 428
R +GV ++ LD VP +G I + +GY + + +
Sbjct: 380 R--PPKGVT---VKILDENG----NEVP--RGVVGRIFVGNGFPFEGY-TDGRDKQI--I 425
Query: 429 NGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARAD 488
+G +GD+G D + + R D+I+SGGEN+ EVE+++ HP V+EA+V+ D
Sbjct: 426 DGLLSSGDVGYFDEDGLLFVDGRDDDMIVSGGENVFPAEVEDLLAGHPDVVEAAVIGVDD 485
Query: 489 ERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKI 547
E +G+ AFV P + I + R + Y VP+ +VF LP+ TGK+
Sbjct: 486 EEFGQRLRAFVVKAPG-----AALDEDAIKDYVRDNLARYKVPRDVVFLDELPRNPTGKV 540
Query: 548 QKHVLRA 554
K LR
Sbjct: 541 LKRELRE 547
|
Length = 549 |
| >gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 132 bits (335), Expect = 3e-33
Identities = 133/543 (24%), Positives = 221/543 (40%), Gaps = 58/543 (10%)
Query: 25 FLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIY 84
L A +P +++ G+ ++++ + QR LA+ L K I G T + PNI Y
Sbjct: 28 ILRDQAARYPDAIAIICGNRQWSYRELDQRADNLAAGLTKLGIKQGDTAVVQLPNIAEFY 87
Query: 85 EAHFGVPMAGAV-LNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSN 143
F + G + A+ + A+ A+ ++D+ + + + +
Sbjct: 88 IVFFALLKLGVAPVLALFSHRKSELTAYA-SQIEPALYIIDRAHSLFDYDDF--ARQLQS 144
Query: 144 GRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWK-PPQDEWQSIALGY 202
+IV G E E FL P K PP +
Sbjct: 145 KLPTLRNIIVAGQ---------------TGEAELFLWLESPAEPVKFPPTKSDEVAFFQL 189
Query: 203 TSGTTASPKGVVLSHRG-AYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAALC 261
+ G+T +PK + +H Y + SV + W + + YL LP H +L
Sbjct: 190 SGGSTGTPKLIPRTHNDYYYSVRRSVEICW-LTQQTRYLCALPAAHNYPLSSPGALGVFY 248
Query: 262 --GTSICLRQVTAKAVYSAIAKYGVTHFC-AAPVVLNSIVNAPSEDTILPLPHVVHVNTA 318
G + + + I ++ VT P V + A L ++ V A
Sbjct: 249 AGGCVVLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKSRADLSSLKLLQVGGA 308
Query: 319 G-----AAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKAR 373
A P+V Q+ F G++E V + + + +
Sbjct: 309 KFSAAAARRVPAVFGCQLQQVF------GMAE----GLVNYTRLD------DPAEIIFTT 352
Query: 374 QGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETF-ANGWY 432
QG +++ V+D PV A G+T G ++ G +GY K P+ N F A G+Y
Sbjct: 353 QGRPMSPDDEVRVVDDH-GNPV-APGET-GMLLTRGPYTFRGYYKAPEHNAAAFDAEGFY 409
Query: 433 HTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWG 492
+TGDL P+ YI + R+KD I GGE I++ E+EN++ HPAV +A++V+ DE G
Sbjct: 410 YTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLLAHPAVHDAALVSMPDELLG 469
Query: 493 ESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAK-MPAYWVPKSIVF-GPLPKTATGKIQKH 550
E CAF+ ++ K+ + + +F R + + Y +P + F LP TA GK+ K
Sbjct: 470 EKSCAFIVVRDPALKAAQ------LRRFLRERGLAEYKLPDRVEFVDSLPLTAVGKVDKK 523
Query: 551 VLR 553
LR
Sbjct: 524 ALR 526
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526 |
| >gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 4e-33
Identities = 66/185 (35%), Positives = 99/185 (53%), Gaps = 11/185 (5%)
Query: 378 FIGL----EKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANGWYH 433
F+GL + + D T + +P + GEIV+ ++KGY P+A E +GW H
Sbjct: 388 FVGLPVPGTEFKICDFETGELLPLGAE--GEIVVRTPSLLKGYWNKPEATAEALRDGWLH 445
Query: 434 TGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGE 493
TGD+G ++ R K+++ G ++ EVE ++ HPAVL ++VV R D G+
Sbjct: 446 TGDIGKIDEQGFLHYLGRRKEMLKVNGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQ 505
Query: 494 SPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGPLPKTATGKIQKHVLR 553
P AFV LKP D + A + +CR M Y VP+ + LP TATGK++K L+
Sbjct: 506 VPVAFVQLKPGADLT-----AAALQAWCRENMAVYKVPEIRIVDALPMTATGKVRKQDLQ 560
Query: 554 AKAKE 558
A A+E
Sbjct: 561 ALAEE 565
|
Length = 567 |
| >gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 1e-32
Identities = 127/531 (23%), Positives = 214/531 (40%), Gaps = 49/531 (9%)
Query: 29 AATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHF 88
AA P R ++ TW + +R LA+AL IG V I+ N EA
Sbjct: 52 AAQRCPDRPGLIDELGTLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALL 111
Query: 89 GVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKP 148
GA + +N P +A ++ ++ D+E+ + AL
Sbjct: 112 AANRIGADILLLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRAL------------- 158
Query: 149 PLLIVIGDESCDP-KDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTT 207
+ + + + + E + Q +P + + TSGTT
Sbjct: 159 -------ADCPQATRIVAWTDEDHDLTVEVLIAAHAGQ---RPEPTGRKGRVILLTSGTT 208
Query: 208 ASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAALCGTSICL 267
+PKG S G ++ + PMFH G+ A+L T +
Sbjct: 209 GTPKGARRSGPGGIGTLKAILDRTPWRAEEPTVIVAPMFHAWGFSQLVLAASLACTIVTR 268
Query: 268 RQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTA-GAAPPPSV 326
R+ +A I ++ T PV+ + I++ P+E + A G+ P V
Sbjct: 269 RRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVRNRYSGRSLRFAAASGSRMRPDV 328
Query: 327 LHA-MSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLD 385
+ A M Q G + + Y +E +T P P+T R +R
Sbjct: 329 VIAFMDQFGDVIYNNYNATEAGMIATA---TPADLRAAPDTAGRPAEGTEIR-------- 377
Query: 386 VIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNY 445
++D ++ VP G+ +G I + + GY + ++ F +G+ +GD+G +
Sbjct: 378 ILDQDFRE-VP-TGE-VGTIFVRNDTQFDGY--TSGSTKD-FHDGFMASGDVGYLDENGR 431
Query: 446 IEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEV 505
+ + R ++I+SGGEN+ +EVE + HP V EA+V+ DE++G+ AFV LKP
Sbjct: 432 LFVVGRDDEMIVSGGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFVVLKPGA 491
Query: 506 DKSNEQQLAEDIMKFCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLRAK 555
E + + R + Y VP+ IV LP+ ATGKI + L+A+
Sbjct: 492 -----SATPETLKQHVRDNLANYKVPRDIVVLDELPRGATGKILRRELQAR 537
|
Length = 537 |
| >gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 9e-32
Identities = 116/543 (21%), Positives = 185/543 (34%), Gaps = 116/543 (21%)
Query: 30 ATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFG 89
A HP +V T+ + +R +LA L + G VA+ P +Y A
Sbjct: 2 AQTHPDAVAVDFWDGSLTYAELDRRANKLAHHLISLGVRPGDIVALCLERSPWLYVAILA 61
Query: 90 VPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPP 149
V AGA ++ + F++ S + V++
Sbjct: 62 VLKAGAAYVPIDPSAPVERLQFIIEDSGATVVL--------------------------- 94
Query: 150 LLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTAS 209
+ P D Y + YTSG+T
Sbjct: 95 --------TSSPDDPAYVI---------------------------------YTSGSTGK 113
Query: 210 PKGVVLSHRGAYLMSLSVALIWGMNEGA-VYLWTLPMF--HCNGWCYTWSL-AALCGTSI 265
PKGVV++HR + I G+ G V + F T L I
Sbjct: 114 PKGVVITHRNICNFLRAEGAILGIRPGDRVLQFASIAFDVSILEIFTTLLAGGTLV---I 170
Query: 266 CLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPS 325
++ + + + + VT P +L + P + +P + + G A P +
Sbjct: 171 PPEELRLEDLAEFLNRLRVTVAHLTPSLLALL--DPED-----VPSLRTLILGGEACPQA 223
Query: 326 VLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLE--- 382
++ S+ + +TYG +E TV A A IG
Sbjct: 224 LVDRWSKPR-RLLNTYGPTEA----TVTA------------TASRLTPGKPVNIGRPLPN 266
Query: 383 -KLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANG--W-------- 431
V+D + VP +GE+ + G V +GYL P+ E F W
Sbjct: 267 YTCWVLDPDLEPLVPIG--AVGELCIGGPGVARGYLNRPELTAEKFIPDPFWLNNPGGRI 324
Query: 432 YHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERW 491
Y TGDL D +E R D + G+ I E+E ++ P V+ A+VV D+
Sbjct: 325 YRTGDLVRYLEDGSLEFLGRKDDQVKIRGQRIELGEIEAVLRALPGVVVAAVVLLLDDPG 384
Query: 492 GESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKH 550
G+ AF+ + + R ++P+Y VP V LP TA+GK+ +
Sbjct: 385 GKQLVAFLAVDGAAGGEPADVDIALLRSALRERLPSYMVPSVYVPLDELPLTASGKVDRK 444
Query: 551 VLR 553
LR
Sbjct: 445 ALR 447
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447 |
| >gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS) | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 3e-31
Identities = 104/364 (28%), Positives = 160/364 (43%), Gaps = 23/364 (6%)
Query: 200 LGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAA 259
L +TSGTT PKGV+ HR + + + VY T G Y
Sbjct: 94 LHFTSGTTGKPKGVLHVHRAVVAHYATARYVLDLRPDDVYWCTADPGWVTGTSYGIIAPL 153
Query: 260 LCGTSICLR--QVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSE-DTILPLPHVVHVN 316
L G ++ + + A+ Y + + VT + AP L ++ A E L + H+
Sbjct: 154 LNGVTLVVDEGEFDAERWYGILEEEKVTVWYTAPTALRMLMRAGPELAARYDLSSLRHIA 213
Query: 317 TAGAAPPPSVLH-AMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQG 375
+ G P V+ G + T+ +ET + + A P P G
Sbjct: 214 SVGEPLNPEVVVWGEKVLGMPIHDTWWQTET--GAIMIANYPGIPVKP--------GSMG 263
Query: 376 VRFIGLEKLDVIDTR--TQQPVPADGKTIGEIVMSGN--VVMKGYLKNPKANEETFANGW 431
G+E VI+ PV G+ GE+ + + +GYL N + +F +GW
Sbjct: 264 RPLPGIE-AAVIERDGDGLTPVTGPGQV-GELALKPGWPSMFRGYLGNEERYASSFVDGW 321
Query: 432 YHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERW 491
Y TGDL + D Y R+ D+I + G + EVE+ + HPAV EA V+ + D
Sbjct: 322 YLTGDLAYRDEDGYFWFVGRADDVIKTAGHLVGPFEVESALMEHPAVAEAGVIGKPDPVA 381
Query: 492 GESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVF-GPLPKTATGKIQKH 550
GE AFV+L+P + S E L +++ F R ++ A P+ I F LPKT +GKI +
Sbjct: 382 GEIVKAFVSLRPGFEPSEE--LRRELLTFARQRLGAAVAPREIHFVDNLPKTRSGKIMRR 439
Query: 551 VLRA 554
+L+A
Sbjct: 440 LLKA 443
|
This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443 |
| >gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like | Back alignment and domain information |
|---|
Score = 127 bits (320), Expect = 4e-31
Identities = 134/559 (23%), Positives = 224/559 (40%), Gaps = 74/559 (13%)
Query: 26 LDRAATVHPTRTSVVH-----GSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNI 80
+D A P + +++ +T+ + A+ IG G TV + +
Sbjct: 23 VDAYADEEPDKLALIWCDDDGEEKIFTFGDLKDYSNKAANFFKALGIGKGDTVMLT---L 79
Query: 81 PAIYEAHFGVP---MAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKI 137
YE F + GA+ L A I + + + +I+ E + +
Sbjct: 80 KRRYEFWFSMLALHKIGAIAIPATHMLTAKDIVYRIEAAGIKMIVCIGE-----DGVPEH 134
Query: 138 MEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQS 197
++E + P LL+++GD + G ++++K ++ P F + P +
Sbjct: 135 IDEAAPECGSPTLLVLVGDPVPE----------GWIDFDKEIENASPDF--ERPTGNDAT 182
Query: 198 ----IALGY-TSGTTASPKGVVLSHRGAY-LMSLSVALIW-GMNEGAVYL------WTLP 244
I L Y TSGTT PK V H Y L + A W + EG ++L W
Sbjct: 183 CNDDILLVYFTSGTTGMPKMV--EHDHTYPLGHIVTAKYWQNVKEGGLHLTVADTGWGKA 240
Query: 245 MFHCNGWCY-TWSLAALCGTSICL---RQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNA 300
++ G Y W + G ++ + + K + I KYGVT FCA P + ++
Sbjct: 241 VW---GKLYGQW----IAGAAVFVYDYDKFDPKNLLEKIEKYGVTTFCAPPTIYRFLIKE 293
Query: 301 PSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQK-GFHVTHTYGLSETYGPSTVCAWKPEW 359
L + + TAG P V + +K G + +G +ET T+ W
Sbjct: 294 DLSK--YDLSSLRYCTTAGEPLNPEVFNTFKEKTGIKLMEGFGQTET----TLTIATFPW 347
Query: 360 DSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPV--PADGKTIGEIVMSGNVVMKGYL 417
P + + + I + + V +DGK +G + GY
Sbjct: 348 MEPKPGSMGKPSPGYDIDIIDPDGKSCEVGEEGEIVIRTSDGKPLG--------LFMGYY 399
Query: 418 KNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPA 477
++P+ E + +G+YHTGD D Y+ R+ D+I S G I EVE+ + HPA
Sbjct: 400 RDPERTAEVWHDGYYHTGDTAWMDEDGYLWFVGRADDLIKSSGYRIGPFEVESALIQHPA 459
Query: 478 VLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFG 537
VLE +V D G+ A + L + S E L +++ + Y P+ I F
Sbjct: 460 VLECAVTGVPDPIRGQVVKATIVLTKGYEPSEE--LKKELQDHVKKVTAPYKYPRIIEFV 517
Query: 538 P-LPKTATGKIQKHVLRAK 555
LPKT +GKI++ +R K
Sbjct: 518 DELPKTISGKIRRVEIREK 536
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537 |
| >gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 7e-31
Identities = 120/432 (27%), Positives = 171/432 (39%), Gaps = 99/432 (22%)
Query: 171 GAVEYEKFLQTGDPQFDWKPPQDEWQSIA-LGYTSGTTASPKGVVLSHRG--AYLMSLSV 227
G V + L G Q +KP + +A L YT GTT KG L HR A ++ +
Sbjct: 180 GHVRFNDALAEGARQ-TFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEA 238
Query: 228 ALIWGMNEGA-----VYLWTLPMFHCNGWCYTWSLAALCGTSICLRQVTAKAVYSAIA-- 280
L + ++ LP++H + AL T L + I
Sbjct: 239 WLQPAFEKKPRPDQLNFVCALPLYH---------IFAL--TVCGLLGMRTGGRNILIPNP 287
Query: 281 -----------KYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHA 329
KY V F A + N+++N P D L ++ N G A V
Sbjct: 288 RDIPGFIKELKKYQVHIFPAVNTLYNALLNNPDFDK-LDFSKLIVANGGGMA----VQRP 342
Query: 330 MSQKGFHVTHT-----YGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKL 384
++++ +T YGLSET P C + A + IGL
Sbjct: 343 VAERWLEMTGCPITEGYGLSET-SPVATCN--------------PVDATEFSGTIGL--- 384
Query: 385 DVIDTRTQQPVPA--------DGK-----TIGEIVMSGNVVMKGYLKNPKANEET----F 427
P+P+ DG GEI + G VM GY P +ET
Sbjct: 385 ---------PLPSTEVSIRDDDGNDLPLGEPGEICIRGPQVMAGYWNRP---DETAKVMT 432
Query: 428 ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARA 487
A+G++ TGD+GV Y +I DR KD+I+ G N+ E+E ++ HP VLE + V
Sbjct: 433 ADGFFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPNEIEEVVASHPGVLEVAAVGVP 492
Query: 488 DERWGESPCAFVTLK-PEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVF-GPLPKTATG 545
DE GE+ FV K P + ED+ FC+ ++ Y PK + F LPKT G
Sbjct: 493 DEHSGEAVKLFVVKKDPALT-------EEDVKAFCKERLTNYKRPKFVEFRTELPKTNVG 545
Query: 546 KIQKHVLRAKAK 557
KI + LR
Sbjct: 546 KILRRELRDGKA 557
|
Length = 557 |
| >gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 1e-30
Identities = 142/585 (24%), Positives = 229/585 (39%), Gaps = 113/585 (19%)
Query: 27 DRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEA 86
D+ A ++ + V YT+ + Y RLA L K + G V I P IP EA
Sbjct: 57 DQIALIY--DSPVTGTKRTYTYAELYDEVSRLAGVLRKLGVVKGDRVIIYMPMIP---EA 111
Query: 87 HFGVPMAGAVLNAVN-------------IRLNAPTIAFLLGHSASAVIMVDQ--EYFKLA 131
+ +A A + A++ R++ ++ +AS I + Y L
Sbjct: 112 VIAM-LACARIGAIHSVVFGGFASKELASRIDDAKPKLIV--TASFGIEPGRVVPYKPLL 168
Query: 132 EEALKIMEEKSNGRFKPPLLIVI--GDESCDPK---DLKYALGRGAVEYEKF--LQTGDP 184
++AL++ + KP ++++ G K DL +A +++ DP
Sbjct: 169 DKALEL------SQHKPHKVLILNRGQVPAPLKPGRDLDWAELMAKARPVDCVPVESTDP 222
Query: 185 QFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHR--GAYLMSL--SVALIWGMNEGAVYL 240
+ + YTSGTT PKGVV R G Y ++L S+ I+G+ G V+
Sbjct: 223 LY-------------ILYTSGTTGKPKGVV---RDTGGYAVALKWSMRNIYGIKPGDVFW 266
Query: 241 WTLPMFHCNGW-------CYTWSLAALCG--TSIC-----LRQVTAKAVYSAIAKYGVTH 286
+ GW Y L T++ + A A + I +YGV
Sbjct: 267 AASDV----GWVVGHSYIVY----GPLLHGATTVLYEGKPVGTPDAGAYWRVIEEYGVNA 318
Query: 287 FCAAPVVLNSIVNAPSEDTIL---PLPHVVHVNTAGAAPPPSVLHAMSQK-GFHVTHTYG 342
AP + +I + + L + + AG L + + G V +
Sbjct: 319 LFTAPTAIRAIRKQDPDGEYIKKYDLSSLRALFLAGERLDSPTLEWIEKTLGVPVIDHWW 378
Query: 343 LSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTI 402
+ET P + A + LP + + K G V+D T + +
Sbjct: 379 QTETGWP--ITANCVGLELLPIKPGSPGKPVPGYDV------QVLDE-TGEELGPGEL-- 427
Query: 403 GEIVMSGNVVMK-----GYLKNPKANEETFAN-------GWYHTGDLGVKHPDNYIEIKD 450
GN+V+K G L ++E F G+Y TGD G K D Y+ +
Sbjct: 428 ------GNIVIKLPLPPGCLLTLWGDDERFKKLYLNKFPGYYDTGDSGYKDEDGYLFVMG 481
Query: 451 RSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNE 510
R+ D+I G +S+ E+E + HP V E +VV DE G+ P V LK +
Sbjct: 482 RTDDVINVAGHRLSTGEMEESVLKHPDVAECAVVGVRDELKGQVPLGLVVLKDDCKID-A 540
Query: 511 QQLAEDIMKFCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLRA 554
QL +I+ R ++ +++VF LPKT +GKI + LR
Sbjct: 541 DQLENEIVALVREQIGPVAAFRNVVFVKRLPKTRSGKILRRTLRK 585
|
PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607 |
| >gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) | Back alignment and domain information |
|---|
Score = 123 bits (312), Expect = 2e-30
Identities = 120/534 (22%), Positives = 191/534 (35%), Gaps = 114/534 (21%)
Query: 33 HPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPM 92
HP R ++V G T+ + +R RLA+ L G VA+ P Y A +
Sbjct: 4 HPDRPALVVGGDTLTYAELKERADRLAARLLALGGRAGDPVAVYGHKSPDAYAA-----I 58
Query: 93 AGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLI 152
+ G A + +D AE KI+E P L+
Sbjct: 59 LACLK---------------AGA---AYVPLDPSQ--PAERIAKILEAA-----GPAALV 93
Query: 153 VIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKG 212
DP DL Y L +TSG+T PKG
Sbjct: 94 A------DPDDLAYIL---------------------------------FTSGSTGKPKG 114
Query: 213 VVLSHRGAY-LMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAALCGTSICL--RQ 269
V +SH + V + EG V+ P F + + A G ++ + ++
Sbjct: 115 VQISHANLASFLDWMVEDF-DLTEGDVFSNQAP-FSFDLSVFDLFPALASGATLYVIPKE 172
Query: 270 VTA--KAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVL 327
A A++ + ++G+T + + P + ++ + + LP + G P +
Sbjct: 173 QIADPLALFEFLKEHGLTVWVSVPSFASLLLLSRELNPES-LPSLRTFLFCGEVLPKKLA 231
Query: 328 HAMSQK--GFHVTHTYGLSETYGPSTV-CAWKPEWDSLPPETQARMK------ARQGVRF 378
A+ ++ + + YG +E TV E PE +R + + G+R
Sbjct: 232 KALRRRFPNARIINLYGPTEA----TVAVTAY-EVT---PEPLSRNEPLPIGYPKPGLR- 282
Query: 379 IGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETF----ANGWYHT 434
++D +PVP GE+V++G V GYL NP+ + F WY T
Sbjct: 283 -----ALILDED-GRPVPPG--EEGELVIAGPQVSPGYLNNPEKTAKAFFQDEGQRWYRT 334
Query: 435 GDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGES 494
GDL D + R I G I E+E + P V EA V+
Sbjct: 335 GDLVYLEDDGLLVYLGRKDFQIKLHGYRIELEEIEAALRALPGVEEAVVLPVPKGEKVVR 394
Query: 495 PCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFG-PLPKTATGKI 547
AFV K + + K + ++P Y +P+ V+ LP A GKI
Sbjct: 395 LVAFVVGKE------GALDTKALKKELKKRLPPYMIPRRFVYLDSLPLNANGKI 442
|
DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447 |
| >gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 8e-30
Identities = 57/154 (37%), Positives = 87/154 (56%), Gaps = 7/154 (4%)
Query: 402 IGEIVMSGNVVMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGG 460
+GE+ + G VMKGY + P+A +E ++GW TGD+ + D Y+ I DR KD+I+ G
Sbjct: 404 VGELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQEDGYMRIVDRKKDMILVSG 463
Query: 461 ENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKF 520
N+ E+E+++ P VL+ + + DE+ GE+ FV +KP E E +M+
Sbjct: 464 FNVYPNELEDVLAALPGVLQCAAIGVPDEKSGEAIKVFVVVKP-----GETLTKEQVMEH 518
Query: 521 CRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLR 553
RA + Y VPK++ F LP T GKI + LR
Sbjct: 519 MRANLTGYKVPKAVEFRDELPTTNVGKILRRELR 552
|
Length = 562 |
| >gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas) | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 2e-29
Identities = 99/363 (27%), Positives = 142/363 (39%), Gaps = 51/363 (14%)
Query: 202 YTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAALC 261
+TSG+ PKGVVLSHR +A + +N V L LP+FH G T L L
Sbjct: 152 FTSGSEGLPKGVVLSHRNLLANIDQIAAVIDLNTEDVLLGALPLFHAFGLTVTLLLPLLT 211
Query: 262 GTSICLRQVT------AKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHV 315
G LR V AK + I Y T C P L + L VV
Sbjct: 212 G----LRVVYYPNPLDAKKIAELIRDYKATILCGTPTFLRGYARNAHPEDFSSLRLVV-- 265
Query: 316 NTAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPP--ETQARMKAR 373
AGA P + ++ F + + E YG +T C+ P M +
Sbjct: 266 --AGAEKLPEATRELFEEKFGIR----ILEGYG-ATECS---------PVISVNTPMGNK 309
Query: 374 QGVRFIG--LEKLDV--IDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPK--ANEETF 427
G +G L ++V + T + +P G +++ G VM GYL N + + E
Sbjct: 310 PGT--VGRPLPGIEVRIVSPETHEELPIG--EGGLLLVRGPNVMSGYLNNEEKTSEVEVL 365
Query: 428 ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARA 487
+GWY TGD+G D ++ I R K GGE +S VE ++
Sbjct: 366 GDGWYDTGDIGKIDEDGFLTIVGRLKRFAKIGGEMVSLTAVEELLSEILPEDSLHAAVEV 425
Query: 488 -DERWGESPCAFVT-LKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTAT 544
DE+ GE T + ++ N L E A +P VP+ I+ +P +
Sbjct: 426 PDEKKGEKIVLLTTTEDLDPEELNA-ILRE-------AGLPNLAVPRKILHVDEIPLLGS 477
Query: 545 GKI 547
GK
Sbjct: 478 GKT 480
|
Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489 |
| >gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 4e-29
Identities = 119/543 (21%), Positives = 200/543 (36%), Gaps = 78/543 (14%)
Query: 36 RTSVVHGSTRYTWLQTYQRCRRLASALCKR-SIGLGCTVAIIAPNIPAIYEAHFGVPMAG 94
+ + +W + + A+AL R V ++ N P ++G
Sbjct: 19 DRGLYFEDSFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLLGAAALSG 78
Query: 95 AVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVI 154
V +N +A + H+ +++ + + +L + P + VI
Sbjct: 79 IVPVGLNPTRRGAALARDIAHADCQLVLTESAHAELLDGL-------------DPGVRVI 125
Query: 155 GDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVV 214
+S D A + P D + I +TSGT+ PK V
Sbjct: 126 NVDSPAWADELAAHRDAEPPF------RVAD-----PDDLFMLI---FTSGTSGDPKAVR 171
Query: 215 LSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAALCGTSICLRQ-VTAK 273
+HR + +A +G+ V ++P+FH N W++A G SI LR+ +A
Sbjct: 172 CTHRKVASAGVMLAQRFGLGPDDVCYVSMPLFHSNAVMAGWAVALAAGASIALRRKFSAS 231
Query: 274 AVYSAIAKYGVTHFCAAPVVLNSIVNAPSE--DTILPLPHVVHVNTAGAAPPPSVLHAMS 331
+ +YG T+ L+ ++ P D PL +V+ N P +
Sbjct: 232 GFLPDVRRYGATYANYVGKPLSYVLATPERPDDADNPL-RIVYGNEGA---PGDIARFAR 287
Query: 332 QKGFHVTHTYGLSE-----TYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDV 386
+ G V +G +E T P T P +L G G+ +D
Sbjct: 288 RFGCVVVDGFGSTEGGVAITRTPDT-----PP-GAL------------GPLPPGVAIVDP 329
Query: 387 IDTRTQQPV---PADGKT-----IGEIV-MSGNVVMKGYLKNPKANEETFANGWYHTGDL 437
DT T+ P IGE+V +G +GY +P+A+ E G Y +GDL
Sbjct: 330 -DTGTECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERMRGGVYWSGDL 388
Query: 438 GVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCA 497
+ D Y R D + GEN+ + +E ++ +P E +V A D G+ A
Sbjct: 389 AYRDADGYAYFAGRLGDWMRVDGENLGTAPIERILLRYPDATEVAVYAVPDPVVGDQVMA 448
Query: 498 FVTLKPEVD---KSNEQQLAEDIMKFCRAKMPAYWVPKSI-VFGPLPKTATGKIQKHVLR 553
+ L P + + LA + + P + V LP+TAT K+ K L
Sbjct: 449 ALVLAPGAKFDPDAFAEFLAA------QPDLGPKQWPSYVRVCAELPRTATFKVLKRQLS 502
Query: 554 AKA 556
A+
Sbjct: 503 AEG 505
|
Length = 529 |
| >gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 5e-29
Identities = 135/541 (24%), Positives = 230/541 (42%), Gaps = 63/541 (11%)
Query: 30 ATVHPTRTSVVHGST--RYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAH 87
A + P R +V+ T + ++ Q LA L + G VA+++ N P
Sbjct: 7 AQIAPDRPAVIVAETGEQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVL 66
Query: 88 FGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFK 147
+ +G + A+N L AP +++G S + V+ +A AL + K
Sbjct: 67 WAALRSGLYITAINHHLTAPEADYIVGDSGARVL--------VASAALDGLAAKVGA--D 116
Query: 148 PPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTT 207
PL + G E G +E L P+ +P + Y+SGTT
Sbjct: 117 LPLRLSFGGEI-----------DGFGSFEAALAGAGPRLTEQPC-----GAVMLYSSGTT 160
Query: 208 ASPKGV-------VLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNG--WCYTWSLA 258
PKG+ + G +++++ A + ++E +Y + P++H WC +
Sbjct: 161 GFPKGIQPDLPGRDVDAPGDPIVAIARAF-YDISESDIYYSSAPIYHAAPLRWCSM--VH 217
Query: 259 ALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSE-DTILPLPHVVHVNT 317
AL GT + ++ A+A + +Y +T P + ++ ++ T + + V
Sbjct: 218 ALGGTVVLAKRFDAQATLGHVERYRITVTQMVPTMFVRLLKLDADVRTRYDVSSLRAVIH 277
Query: 318 AGAAPPPSVLHAM-SQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGV 376
A A P V HAM G V Y +E +G + + + P+W + P +
Sbjct: 278 AAAPCPVDVKHAMIDWLGPIVYEYYSSTEAHGMTFIDS--PDWLAHPGSVGRSV------ 329
Query: 377 RFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANG---WYH 433
L L + D + +PA IG + + + YL +P+ W
Sbjct: 330 ----LGDLHICDDDGNE-LPAG--RIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTT 382
Query: 434 TGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGE 493
GDLG D Y+ + DR +IISGG NI E EN + +HPAV + +V+ D GE
Sbjct: 383 VGDLGSVDEDGYLYLADRKSFMIISGGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGE 442
Query: 494 SPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVL 552
A + L + S+E LA +++ + R+++ Y P+S+ F LP+T TGK+ K +L
Sbjct: 443 QVKAVIQLVEGIRGSDE--LARELIDYTRSRIAHYKAPRSVEFVDELPRTPTGKLVKGLL 500
Query: 553 R 553
R
Sbjct: 501 R 501
|
Length = 501 |
| >gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 3e-28
Identities = 149/594 (25%), Positives = 252/594 (42%), Gaps = 94/594 (15%)
Query: 8 DDLPK--NAANYMALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKR 65
D+P N Y +L + ++A + + + ++ T+ + +R R A+ L +
Sbjct: 11 ADVPAEINPDRYQSLVDM--FEQAVARYADQPAFINMGEVMTFRKLEERSRAFAAYL-QN 67
Query: 66 SIGL--GCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHS-ASAVIM 122
+GL G VA++ PN+ A FG+ AG ++ VN + L S A A+++
Sbjct: 68 GLGLKKGDRVALMMPNLLQYPIALFGILRAGMIVVNVNPLYTPRELEHQLNDSGAKAIVI 127
Query: 123 VDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDL--------------KYAL 168
V A K++ K +L +GD+ K KY L
Sbjct: 128 VSN----FAHTLEKVVF---KTPVKHVILTRMGDQLSTAKGTLVNFVVKYIKRLVPKYHL 180
Query: 169 GRGAVEYEKFLQTGDPQFDWKPPQDEWQSIA-LGYTSGTTASPKGVVLSHRG--AYLMSL 225
A+ + L G + + P+ + +A L YT GTT KG +L+HR A L
Sbjct: 181 -PDAISFRSALHKGR-RMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQA 238
Query: 226 SVALIWGMNEGAVYLWT-LPMFHCNGWCYTWSLAALC-------GTSICL---RQVTAKA 274
A ++ G + T LP++H ++L C G ++ + R +
Sbjct: 239 KAAYGPLLHPGKELVVTALPLYH------IFALTVNCLLFIELGGQNLLITNPRDIPG-- 290
Query: 275 VYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQK- 333
+ KY T + N+++N E L + ++ G V A++++
Sbjct: 291 FVKELKKYPFTAITGVNTLFNALLNNE-EFQELDFSSL-KLSVGGGMA---VQQAVAERW 345
Query: 334 ----GFHVTHTYGLSETYGPSTVCAWKPEWDS----LP-PETQARMKARQGVRFIGLEKL 384
G ++ YGL+E +V + ++ S LP P T+ ++ G
Sbjct: 346 VKLTGQYLLEGYGLTECSPLVSVNPYDLDYYSGSIGLPVPSTEIKLVDDDG--------- 396
Query: 385 DVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDN 444
G+ GE+ + G VM GY + P+A +E +GW TGD+ V +
Sbjct: 397 ---------NEVPPGEP-GELWVKGPQVMLGYWQRPEATDEVIKDGWLATGDIAVMDEEG 446
Query: 445 YIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPE 504
++ I DR KD+I+ G N+ E+E+++ LHP VLE + V E GE+ FV K
Sbjct: 447 FLRIVDRKKDMILVSGFNVYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEAVKIFVVKK-- 504
Query: 505 VDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLRAKAK 557
D S + E+++ CR + Y VPK + F LPK+ GKI + LR +A+
Sbjct: 505 -DPSLTE---EELITHCRRHLTGYKVPKLVEFRDELPKSNVGKILRRELRDEAR 554
|
Length = 560 |
| >gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 3e-28
Identities = 93/371 (25%), Positives = 162/371 (43%), Gaps = 34/371 (9%)
Query: 202 YTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAALC 261
+T GTT PK V +H ++ + ++ + +P++H +G +AAL
Sbjct: 183 FTGGTTGLPKMVPWTHANIASSVRAIITGYRLSPRDATVAVMPLYHGHGL-----IAALL 237
Query: 262 GTSICLRQVT--AKAVYSA------IAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVV 313
T V A+ +SA I G T + A P + ++ + + P +
Sbjct: 238 ATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEPSGRKPAAL 297
Query: 314 HVNTAGAAP--PPSVLHAMSQKGFHVTHTYGLSE-TYGPSTVCAWKPEWDSLPPETQARM 370
+ +AP + ++ V +G++E T+ +T P + +
Sbjct: 298 RFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTTTQIEGIGQTENPVVSTGLV 357
Query: 371 KARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANG 430
G + I P+PA +GE+ + G V++GYL +P F +G
Sbjct: 358 GRSTGAQI-------RIVGSDGLPLPAG--AVGEVWLRGTTVVRGYLGDPTITAANFTDG 408
Query: 431 WYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADER 490
W TGDLG + I+ R K++I GGE IS VE ++ HP V+EA+V D+
Sbjct: 409 WLRTGDLGSLSAAGDLSIRGRIKELINRGGEKISPERVEGVLASHPNVMEAAVFGVPDQL 468
Query: 491 WGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSI-VFGPLPKTATGKIQK 549
+GE+ A + V + + AE++++FCR ++ A+ +P S LP TA G + +
Sbjct: 469 YGEAVAAVI-----VPRESAPPTAEELVQFCRERLAAFEIPASFQEASGLPHTAKGSLDR 523
Query: 550 HVLRAKAKEMG 560
RA A++ G
Sbjct: 524 ---RAVAEQFG 531
|
Length = 534 |
| >gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 5e-28
Identities = 59/149 (39%), Positives = 80/149 (53%), Gaps = 5/149 (3%)
Query: 413 MKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMM 472
M+G NP+ E FA WY +GD D Y + R D+I + GE + EVE+ +
Sbjct: 415 MRGIWNNPEKYESYFAGDWYVSGDSAYMDEDGYFWFQGRVDDVIKTSGERVGPFEVESKL 474
Query: 473 YLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPK 532
HPAV EA V+ + D GE AFV L+P + S E L E+I F + + A+ P+
Sbjct: 475 MEHPAVAEAGVIGKPDPVRGEIIKAFVALRPGYEPSEE--LKEEIRGFVKKGLGAHAAPR 532
Query: 533 SIVFGP-LPKTATGKIQKHVLRAKAKEMG 560
I F LPKT +GKI + VL KA E+G
Sbjct: 533 EIEFKDKLPKTRSGKIMRRVL--KAWELG 559
|
Length = 570 |
| >gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 1e-26
Identities = 99/368 (26%), Positives = 154/368 (41%), Gaps = 46/368 (12%)
Query: 200 LGYTSGTTASPKGVVLSHRGAYLMSLSVALIWG-----MNEGAVYLWTLPMFHCNGWCYT 254
+G+TSGTT PKG + HR L++ + V++ + P+ +T
Sbjct: 152 IGFTSGTTGLPKGTMHFHRDI----LAICDAFPRHVLQPTPDDVFIGSPPL------AFT 201
Query: 255 WSLAALC-------GTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTIL 307
+ L L +++ L Q T + AI ++ T AP +++ I
Sbjct: 202 FGLGGLVLFPLRFGASAVLLEQATPPLLLKAIQEHRATILFTAPTAYRAMLIKVKAFDIS 261
Query: 308 PLPHVVHVNTAGAAPPPSVLHAMSQK-GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPET 366
L V +AG P V ++ G + G +E + E ++ P T
Sbjct: 262 SLRKCV---SAGETLPAKVWQDWYERTGLKIIDGIGATEML---HIFISANEENAKPGAT 315
Query: 367 QARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEET 426
G G E V D VP G + + G + YL + + E
Sbjct: 316 --------GKPVPGYEARIVDDQGN--EVPRG--EAGRLAVRGPTGCR-YLDDERQQEYV 362
Query: 427 FANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVAR 486
+GW TGD+ + D Y RS D+I+S G NI++ EVE+ + HP V E +V+
Sbjct: 363 -RDGWNVTGDIFRQDEDGYFHYVARSDDMIVSAGYNIAAPEVEDALLTHPDVAECAVIGV 421
Query: 487 ADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVF-GPLPKTATG 545
DE G+ CA + L+ + + LAE + F +A + Y P+ I F LPKT TG
Sbjct: 422 PDEERGQIVCAHIVLRDGTKAT--ELLAERLQDFVKAVIAPYKYPREINFVDALPKTQTG 479
Query: 546 KIQKHVLR 553
KIQ+ LR
Sbjct: 480 KIQRFRLR 487
|
ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487 |
| >gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 3e-26
Identities = 142/531 (26%), Positives = 213/531 (40%), Gaps = 90/531 (16%)
Query: 70 GCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFK 129
G VA++ PN A FGV AG + VN + L S ++V++V +
Sbjct: 76 GDRVALMMPNCLQYPIATFGVLRAGLTVVNVNPLYTPRELKHQLIDSGASVLVVIDNFGT 135
Query: 130 LAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKD------LKYALG-------RGAVEYE 176
++ + ++ K + +GD PK +KY GA+ +
Sbjct: 136 TVQQVI------ADTPVKQVITTGLGDMLGFPKAALVNFVVKYVKKLVPEYRINGAIRFR 189
Query: 177 KFLQTGDPQFDWKPPQDEWQSIA-LGYTSGTTASPKGVVLSHRGAYLMSLSVALIW---- 231
+ L G + Q E IA L YT GTT KG +L+HR + ++ A W
Sbjct: 190 EALALGR-KHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRN-LVANMQQAHQWLAGT 247
Query: 232 -GMNEG-AVYLWTLPMFHCNGWCYTWSLAALCGTSICLRQVTA-----------KAVYSA 278
+ EG V + LP++H + AL + ++
Sbjct: 248 GKLEEGCEVVITALPLYH---------IFALTANGLVFMKIGGCNHLISNPRDMPGFVKE 298
Query: 279 IAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQ-KGFHV 337
+ K T F + N ++N P D I + G A SV Q G +
Sbjct: 299 LKKTRFTAFTGVNTLFNGLLNTPGFDQI-DFSSLKMTLGGGMAVQRSVAERWKQVTGLTL 357
Query: 338 THTYGLSET-----YGPSTVCAWKPEWDS---LP-PETQARMKARQGVRFIGLEKLDVID 388
YGL+ET P T+ E++ LP P T A +K D
Sbjct: 358 VEAYGLTETSPAACINPLTL----KEYNGSIGLPIPSTDACIKD---------------D 398
Query: 389 TRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIE 447
T + IGE+ + G VMKGY K P+ + A+GW HTGD+ ++
Sbjct: 399 AGTVLAI----GEIGELCIKGPQVMKGYWKRPEETAKVMDADGWLHTGDIARMDEQGFVY 454
Query: 448 IKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDK 507
I DR KD+I+ G N+ E+E+++ + P VLE + V DE+ GE +K + K
Sbjct: 455 IVDRKKDMILVSGFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGE------IVKVVIVK 508
Query: 508 SNEQQLAEDIMKFCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLRAKAK 557
+ AED+ RA + Y P+ I F LPKT GKI + LR AK
Sbjct: 509 KDPALTAEDVKAHARANLTGYKQPRIIEFRKELPKTNVGKILRRELRDAAK 559
|
Length = 560 |
| >gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 4e-25
Identities = 77/227 (33%), Positives = 110/227 (48%), Gaps = 26/227 (11%)
Query: 334 GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTR-TQ 392
G + YGL+ET P + P AR+ G+ G L VID +
Sbjct: 358 GCTIVEGYGLTET---------SPVASTNPYGELARL-GTVGIPVPG-TALKVIDDDGNE 406
Query: 393 QPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDR 451
P+ G+ GE+ + G VMKGY + P+A E A GW+ TGD+ V PD ++ I DR
Sbjct: 407 LPL---GER-GELCIKGPQVMKGYWQQPEATAEALDAEGWFKTGDIAVIDPDGFVRIVDR 462
Query: 452 SKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQ 511
KD+II G N+ E+E+++ HP V + + DER GE+ FV + +
Sbjct: 463 KKDLIIVSGFNVYPNEIEDVVMAHPKVANCAAIGVPDERSGEAVKLFVV-------ARDP 515
Query: 512 QLAEDIMK-FCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLRAKA 556
L+ + +K +C+ Y VPK IV LP T GKI + LR A
Sbjct: 516 GLSVEELKAYCKENFTGYKVPKHIVLRDSLPMTPVGKILRRELRDIA 562
|
Length = 562 |
| >gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 5e-25
Identities = 135/578 (23%), Positives = 212/578 (36%), Gaps = 105/578 (18%)
Query: 24 WFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAI 83
+ AA HP R +++ ++ + R R A R +G G VA++ N P
Sbjct: 41 DVFEEAAARHPDRPALLFEDQSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEY 100
Query: 84 YEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSN 143
A G+ GAV+ +N + +A L + ++V +E + EEA +++
Sbjct: 101 LAAWLGLAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEA------RAD 154
Query: 144 GRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKF-------LQTGDPQFDWKPPQDEWQ 196
P L + GD DP+ + L A + D F
Sbjct: 155 LARPPRLWVAGGDTLDDPEGYE-DLAAAAAGAPTTNPASRSGVTAKDTAF---------- 203
Query: 197 SIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWS 256
YTSGTT PK V+SH + + V LP++H G WS
Sbjct: 204 ---YIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTPDDVLYCCLPLYHNTGGTVAWS 260
Query: 257 LAALCGTSICL-RQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHV 315
G ++ L R+ +A + + +Y T F + ++N P + T H + +
Sbjct: 261 SVLAAGATLALRRKFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKPTD--RDHRLRL 318
Query: 316 NTAGAAPPPSVLHAMSQKGFHVTHT---YGLSET-------YGPSTVCAWKPEWDSLPPE 365
G P + Q+ F + Y SE + P W + P
Sbjct: 319 -MIGNGLRPDIWDEFQQR-FGIPRILEFYAASEGNVGFINVFNFDGTVGRVPLWLAHP-- 374
Query: 366 TQARMKARQGVRFIGLEKLDVIDTRTQQPV-PADGKTI----GEIVMSGNVVMK------ 414
+ V++ D T +PV ADG+ I GE+ G ++ +
Sbjct: 375 --YAI-----VKY---------DVDTGEPVRDADGRCIKVKPGEV---GLLIGRITDRGP 415
Query: 415 --GYLKNPKANE-----ETFANG--WYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISS 465
GY +P+A+E + F G W++TGDL + + DR D GEN+++
Sbjct: 416 FDGYT-DPEASEKKILRDVFKKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRWKGENVAT 474
Query: 466 VEVENMMYLHPAVLEASV----VARADERWGESPCAFVTLKPEVDKS-NEQQLAEDIMKF 520
EVEN + P V EA V V D R G + + LA
Sbjct: 475 TEVENALSGFPGVEEAVVYGVEVPGTDGRAG-----MAAIVLADGAEFDLAALAA----H 525
Query: 521 CRAKMPAYWVPKSIVF----GPLPKTATGKIQKHVLRA 554
++PAY VP +F L T T K +K LR
Sbjct: 526 LYERLPAYAVP---LFVRLVPELETTGTFKYRKVDLRK 560
|
Length = 600 |
| >gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 1e-24
Identities = 130/535 (24%), Positives = 209/535 (39%), Gaps = 75/535 (14%)
Query: 29 AATVHPTRTSVVH--GSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEA 86
A P RT+++ G+ Y LQ LA L + + G V ++ N A
Sbjct: 44 TAARWPGRTAIIDDDGALSYRELQRATE--SLARRLTRDGVAPGRAVGVMCRNGRGFVTA 101
Query: 87 HFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKL---AEEALKIMEEKSN 143
F V + GA + ++ + +A L + ++ D E+ + A++A+ +++ +
Sbjct: 102 VFAVGLLGADVVPISTEFRSDALAAALRAHHISTVVADNEFAERIAGADDAVAVIDPAT- 160
Query: 144 GRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYT 203
G E + A GR I L T
Sbjct: 161 ----------AGAEESGGRPAVAAPGR---------------------------IVL-LT 182
Query: 204 SGTTASPKGVVLSHRGAYLMSLSVALI--WGMNEGAVYLWTLPMFHCNGWCYTWSLAALC 261
SGTT PKGV + + + + V ++ + G+ +PMFH G AL
Sbjct: 183 SGTTGKPKGVPRAPQLRSAVGVWVTILDRTRLRTGSRISVAMPMFHGLGLGMLMLTIALG 242
Query: 262 GTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTIL-PLPHVVHVNTAGA 320
GT + R A+A + + + F A PVVL I+ P PLP + V ++G
Sbjct: 243 GTVLTHRHFDAEAALAQASLHRADAFTAVPVVLARILELPPRVRARNPLPQLRVVMSSGD 302
Query: 321 APPPSVLHA-MSQKGFHVTHTYGLSET-YGPSTVCAWKPEWDSLPPETQARMKARQGVRF 378
P++ M G + + YG +E G A + PET + A VR
Sbjct: 303 RLDPTLGQRFMDTYGDILYNGYGSTEVGIGALATPADLRDA----PETVGKPVAGCPVR- 357
Query: 379 IGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLG 438
I R +PV + G I + G + Y + +G TGD+G
Sbjct: 358 --------ILDRNNRPVGP--RVTGRIFVGGELAGTRY---TDGGGKAVVDGMTSTGDMG 404
Query: 439 VKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAF 498
+ I R D+IISGGEN+ VEN + HPAV + +V+ DER+G AF
Sbjct: 405 YLDNAGRLFIVGREDDMIISGGENVYPRAVENALAAHPAVADNAVIGVPDERFGHRLAAF 464
Query: 499 VTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSI-VFGPLPKTATGKIQKHVL 552
V L P A + + + ++ + P+ I + +P+ TGK+ + L
Sbjct: 465 VVLHPGSGVD-----AAQLRDYLKDRVSRFEQPRDINIVSSIPRNPTGKVLRKEL 514
|
Length = 516 |
| >gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 2e-24
Identities = 108/421 (25%), Positives = 158/421 (37%), Gaps = 62/421 (14%)
Query: 179 LQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAV 238
L++ P P + + L TSG+T PK VVL+HR S + G V
Sbjct: 152 LRSAPPDAPLHPARPD-DPALLLLTSGSTGVPKCVVLTHRNILARSAGTVQVNGFTPDDV 210
Query: 239 YLWTLPMFHCNGWCYTWSLAALCGTSICLRQVTAKAVY---------SAIAKYGVTHFCA 289
L +P+ H G L + C +Q+ Y I +Y VT
Sbjct: 211 SLNWMPLDHVGGIVM-LHLRDVY--LGC-QQIHVPTDYILADPLRWLDLIDRYRVTI-TW 265
Query: 290 APVVLNSIVNAPSEDTILP----LPHVVHVNTAGAAPPPSV----LHAMSQKGF--HVTH 339
AP +++N E I L + ++ AG A L ++ G
Sbjct: 266 APNFAFALLNDALER-IEDRSWDLSSLRYIINAGEAVVAKTIRRFLELLAPYGLPADAIR 324
Query: 340 -TYGLSET-----------YGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEK---- 383
+G+SET GP T P A + V F+ L +
Sbjct: 325 PAFGMSETCSGVTYSRGFRTGPDT--GGVLVDSLTGPLRFAAADHPEAVTFVELGRPIPG 382
Query: 384 --LDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETF-ANGWYHTGDLGVK 440
+ ++D +P +G + + G V GY +NP+AN E F +GW+ TGDLG
Sbjct: 383 VAIRIVDE-DGALLPEG--EVGRLQVRGPTVTSGYYRNPEANAEAFTEDGWFRTGDLGFL 439
Query: 441 HPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVA---RADERWGESPCA 497
H D + I R KD+II G N + E+E + P V + A R +
Sbjct: 440 H-DGRLTITGREKDMIIINGVNYYNHEIEAAVEQVPGVEPSFTAACAVRDAGSGTDELAV 498
Query: 498 FVTLKPEVDKSNEQ-QLAEDIMKFCRAKM---PAYWVPKSIVFGPLPKTATGKIQKHVLR 553
F P D + L I K+ PAY +P + PKT+ GKIQ+ LR
Sbjct: 499 FFV--PRYDLDDRLAALLRAIRTHVARKIGIAPAYVIP--LAKEDFPKTSLGKIQRAQLR 554
Query: 554 A 554
Sbjct: 555 K 555
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560 |
| >gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 2e-24
Identities = 103/462 (22%), Positives = 159/462 (34%), Gaps = 82/462 (17%)
Query: 51 TY----QRCRRLASAL-CKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLN 105
TY +R RLA L +G G VA++ + A V AGA ++
Sbjct: 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYP 60
Query: 106 APTIAFLLGHSASAVIMVDQEYFKLAEEA------LKIMEEKSNGRFKPPLLIVIGDESC 159
A +AF+L + + +++ D L +E + P D
Sbjct: 61 AERLAFILEDAGARLLLTDSALASRLAGLVLPVILLDPLELAALDDAPAPPP---PDAPS 117
Query: 160 DPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRG 219
P DL Y + YTSG+T PKGVV++HR
Sbjct: 118 GPDDLAYVI---------------------------------YTSGSTGRPKGVVVTHRS 144
Query: 220 AYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAALCGTSICL-----RQVTAKA 274
+ +A +G++ L + A L G ++ + + A
Sbjct: 145 LVNLLAWLARRYGLDPDDRVLQFAS-LSFDASVEEIFGALLAGATLVVPPEDEERDDAAL 203
Query: 275 VYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQKG 334
+ + IA++ VT P +L + A L + V G A P+++ +G
Sbjct: 204 LAALIAEHPVTVLNLTPSLLALLAAALPPA----LASLRLVILGGEALTPALVDRWRARG 259
Query: 335 FHVT--HTYGLSETYGPSTVCAWKPEWDSLPPETQARM--KARQGVRFIGLEKLDVIDTR 390
+ YG +ET + P + R L V+D
Sbjct: 260 PGARLINLYGPTET---TVWSTATLVDPDDAPRESPVPIGRPLANTR------LYVLD-D 309
Query: 391 TQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANG---------WYHTGDLGVKH 441
+PVP +GE+ + G V +GYL P+ E F Y TGDL
Sbjct: 310 DLRPVPVGV--VGELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYL 367
Query: 442 PDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASV 483
PD +E R D + G I E+E + HP V EA V
Sbjct: 368 PDGNLEFLGRIDDQVKIRGYRIELGEIEAALLRHPGVREAVV 409
|
This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409 |
| >gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C) | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 2e-24
Identities = 131/569 (23%), Positives = 199/569 (34%), Gaps = 145/569 (25%)
Query: 34 PTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMA 93
P ++V+G T+ + +R RLA L R +G G VA++ P + A + A
Sbjct: 1 PDAIALVYGDRSLTYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAILAILKA 60
Query: 94 GAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEA---LKIMEEKSNGRFKPPL 150
GA ++ A +AF+L S + V++ D+ LA L I+EE+ + P
Sbjct: 61 GAAYVPLDPAYPAERLAFMLEDSGARVLLTDESLAPLARADQLPLVILEEELDAEDAGPP 120
Query: 151 LIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASP 210
+ D DL Y + YTSG+T P
Sbjct: 121 APAV-----DADDLAYVM---------------------------------YTSGSTGRP 142
Query: 211 K-------GVV----------LSHRGAYLMSLSVAL------IWGMNEGAVYLWTLPMFH 247
K GVV L +L ++ IWG +
Sbjct: 143 KGVAVPHRGVVRLVRNTNYIALDPDDRFLQLSPLSFDASTFEIWG-----------ALL- 190
Query: 248 CNGWCYTWSLAALCGTSICLRQV--TAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDT 305
NG L ++ + IA+ GVT + N +V+ E
Sbjct: 191 -NG-------GRLVLID---KETLLDPDRLARLIAEQGVTVLWLTAALFNQLVDEDPEA- 238
Query: 306 ILPLPHVVHVNTAG-AAPPPSVLHAMSQK-GFHVTHTYGLSETYGPSTV--CAWK----- 356
L + + G P V ++ G + + YG +E +T
Sbjct: 239 ---LAGLRQLLVGGDVLSPAHVRRVLAACPGLRLINGYGPTE----NTTFSTCHVITRLD 291
Query: 357 PEWDSLP-----PETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNV 411
DS+P P T ++D QPVP GE+ + G+
Sbjct: 292 EAADSIPIGRPIPNTTVY----------------ILD-EEGQPVPIG--VPGELYVGGDG 332
Query: 412 VMKGYLKNPKANEETF-----ANG--WYHTGDLGVKHPDNYIEIKDRSKDIIISGGENIS 464
+ GYL P+ E F G Y TGDL PD IE R + G I
Sbjct: 333 LALGYLNRPELTAERFVPDPFGPGERLYRTGDLARWRPDGNIEFLGRIDRQVKIRGFRIE 392
Query: 465 SVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAK 524
E+E + HP V EA+V+ R D + A+V + +D A ++ +
Sbjct: 393 LGEIEQALLQHPGVREAAVLVREDAAGDKRLVAYVVARGALD-------AAELRAHLAER 445
Query: 525 MPAYWVPKSIVFGP-LPKTATGKIQKHVL 552
+PAY VP + V LP TA GK+ + L
Sbjct: 446 LPAYMVPAAFVVLDELPLTANGKVDRRAL 474
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474 |
| >gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Score = 104 bits (263), Expect = 6e-24
Identities = 60/178 (33%), Positives = 88/178 (49%), Gaps = 9/178 (5%)
Query: 384 LDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNP-KANEETFANGWYHTGDLGVKHP 442
L V D T +P IG I + G V KGY + P K EE A+G++ TGDLG
Sbjct: 332 LRVTDPETGAELPPGE--IGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKIDE 389
Query: 443 DNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLK 502
Y+ I R KD+IISGG N+ EVE + P V+E++V+ +GE A V K
Sbjct: 390 RGYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVPK 449
Query: 503 PEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKEM 559
P I+ + ++ + PK + F LP+ GK+QK++LR + ++
Sbjct: 450 PGAALD-----EAAILAALKGRLARFKQPKRVFFVDELPRNTMGKVQKNLLREQYADL 502
|
Length = 504 |
| >gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 6e-24
Identities = 101/374 (27%), Positives = 152/374 (40%), Gaps = 45/374 (12%)
Query: 202 YTSGTTASPKGVVLSHRGAYLMSLSVALI--WGMNEGAVYLWTLPMFHCNGWCYTWSLAA 259
+TSGTT +PK V SH L AL +G+ V ++P+FH N W+ A
Sbjct: 157 FTSGTTGAPKAVRCSH--GRLAFAGRALTERFGLTRDDVCYVSMPLFHSNAVMAGWAPAV 214
Query: 260 LCGTSICLR-QVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPS--EDTILPLPHVVHVN 316
G ++ L + +A + +YG T+F L I+ P +D PL
Sbjct: 215 ASGAAVALPAKFSASGFLDDVRRYGATYFNYVGKPLAYILATPERPDDADNPLRVAF--- 271
Query: 317 TAGAAPPPSVLHAMSQK-GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQG 375
G P + S++ G V YG SE P T G
Sbjct: 272 --GNEASPRDIAEFSRRFGCQVEDGYGSSEGAVIVV----------REPGTPP---GSIG 316
Query: 376 VRFIGLEKLDVIDTRTQQPVP---ADGK------TIGEIV-MSGNVVMKGYLKNPKANEE 425
G+ + +T T+ V A G IGE+V +G +GY NP+A E
Sbjct: 317 RGAPGVAIYNP-ETLTECAVARFDAHGALLNADEAIGELVNTAGAGFFEGYYNNPEATAE 375
Query: 426 TFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVA 485
+G Y +GDL + D +I R+ D + GEN+S+ +E ++ HPA+ +V A
Sbjct: 376 RMRHGMYWSGDLAYRDADGWIYFAGRTADWMRVDGENLSAAPIERILLRHPAINRVAVYA 435
Query: 486 RADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAK--MPAYWVPKSI-VFGPLPKT 542
DER G+ A + L+ A F A+ + P+ + + LP T
Sbjct: 436 VPDERVGDQVMAALVLRDGATFD-PDAFAA----FLAAQPDLGTKAWPRYVRIAADLPST 490
Query: 543 ATGKIQKHVLRAKA 556
AT K+ K L A+
Sbjct: 491 ATNKVLKRELIAQG 504
|
Length = 540 |
| >gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 1e-23
Identities = 61/169 (36%), Positives = 90/169 (53%), Gaps = 12/169 (7%)
Query: 393 QPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDR 451
P+P G +G ++ G +GY K+P+ N F ANG+Y +GDL PD YI + R
Sbjct: 373 NPLP-QG-EVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSIDPDGYITVVGR 430
Query: 452 SKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQ 511
KD I GGE I++ E+EN++ HPAV+ A++V+ DE GE CAF+ +K +
Sbjct: 431 EKDQINRGGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGEKSCAFLVVKEPLK----- 485
Query: 512 QLAEDIMKFCRAKMPA-YWVPKSIVFGP-LPKTATGKIQKHVLRAKAKE 558
A + +F R + A + +P + LP TA GK+ K LR
Sbjct: 486 --AVQLRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLAS 532
|
Length = 536 |
| >gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme) | Back alignment and domain information |
|---|
Score = 104 bits (263), Expect = 1e-23
Identities = 53/129 (41%), Positives = 74/129 (57%), Gaps = 3/129 (2%)
Query: 430 GWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADE 489
G+Y TGD + D Y I R D+I G + + EVE+ + HPAV EA+VV + DE
Sbjct: 463 GYYFTGDGARRDEDGYYWILGRVDDVINVSGHRLGTAEVESALVSHPAVAEAAVVGKPDE 522
Query: 490 RWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQ 548
GE+ AFVTLK V+ S+E L +++ K R ++ P I+F P LPKT +GKI
Sbjct: 523 VKGEAIYAFVTLKDGVEPSDE--LRKELKKHVRKEIGPIATPDEIIFVPGLPKTRSGKIM 580
Query: 549 KHVLRAKAK 557
+ +LR A
Sbjct: 581 RRILRKIAA 589
|
Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602 |
| >gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 2e-23
Identities = 105/393 (26%), Positives = 133/393 (33%), Gaps = 97/393 (24%)
Query: 202 YTSGTTASPKGVVLSHRGAYLMSLSVALI-WGMNEGAVYLWTLPMFHCNGWCYTWSLAAL 260
YTSG+T PKGV + HR A AL+ W + L
Sbjct: 112 YTSGSTGRPKGVAIEHRNA------AALLQWAAAVFSAEELA---------------GVL 150
Query: 261 CGTSICL---------------RQV---TAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPS 302
TSIC R V A A+ AK VT P ++
Sbjct: 151 AATSICFDLSVFEIFVPLSTGGRVVLADNALALPDLPAKAEVTLINTVPSAARELLRHD- 209
Query: 303 EDTILPLPHVVH-VNTAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGP------STVCAW 355
LP V VN AG P ++ + V Y L YGP ST
Sbjct: 210 -----ALPSSVRTVNLAGEPLPQELVQRLYALP-QVERVYNL---YGPSEDTTYSTYAEV 260
Query: 356 KPEWDSLP------PETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSG 409
+P P TQA V+D QPVP GE+ + G
Sbjct: 261 EPGASRTPSIGRPLAGTQA----------------YVLD-AHLQPVPV--GVPGELYIGG 301
Query: 410 NVVMKGYLKNPKANEETF-ANGW--------YHTGDLGVKHPDNYIEIKDRSKDIIISGG 460
V +GYL P+ E F N + Y TGDL + D +E R D + G
Sbjct: 302 AGVARGYLGRPELTAERFLPNPFAGSPGERLYRTGDLVRRRADGQLEYLGRIDDQVKVRG 361
Query: 461 ENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKF 520
I E+E + P V EA VVA D A++ P ED+
Sbjct: 362 FRIELGEIEAALRSIPGVAEAVVVAIGDAAGDRQLVAYIVADPG-----AAIDIEDLRAR 416
Query: 521 CRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVL 552
++PAY VP V LP T GKI + L
Sbjct: 417 LATRLPAYMVPSRFVRLDALPLTPNGKIDRKAL 449
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449 |
| >gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 7e-23
Identities = 88/377 (23%), Positives = 137/377 (36%), Gaps = 60/377 (15%)
Query: 202 YTSGTTASPKGVVLSH--------------RGAYLMSLSVALIWGMNEGAVYLWTLPMFH 247
YT GTT PKGV+ G + + G +L P+ H
Sbjct: 10 YTGGTTGMPKGVMWRQEDIFRVLLGGPDFATGEPTLEELAKQVAAGGAGTRFLPACPLMH 69
Query: 248 CNGWCYTWS-LAALC-GTSICL---RQVTAKAVYSAIAKYGVTH-FCAAPVVLNSIVNAP 301
G W L+AL G ++ L + V+ + K+ V ++ A
Sbjct: 70 GAG---QWLALSALFAGGTVVLLPDDKFDPDRVWRTVEKHRVNTLVIVGDAFARPLLEAL 126
Query: 302 SEDTILPLPHVVHVNTAGAAPPPSV-------LHAMSQKGFHVTHTYGLSETYGPSTVCA 354
L + ++++GA P V L ++ + G SET G + +
Sbjct: 127 EAAGRYDLSSLRAISSSGAMWSPEVKQGLLELLPNLA-----LVDALGASETGGGGSSVS 181
Query: 355 WKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMK 414
T V V+D + P G+ G I G V +
Sbjct: 182 RAG----GASATGKFELGPDTV---------VLDEDGSEVPPGSGEV-GWIARGGRVPL- 226
Query: 415 GYLKNPKANEETF--ANG--WYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVEN 470
GY K+P+ +TF +G + GD D I + R I +GGE + EVE
Sbjct: 227 GYYKDPEKTAKTFREIDGVRYAVPGDFARVEADGTITLLGRGSVCINTGGEKVFPEEVEE 286
Query: 471 MMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWV 530
+ HP V +A VV DERWG+ A V L+ ++ CR + Y +
Sbjct: 287 ALKAHPDVADALVVGVPDERWGQRVVAVVQLRAGAGLD-----LAELRDHCRQHLAGYKL 341
Query: 531 PKSIVFGP-LPKTATGK 546
P++IV +P+ +GK
Sbjct: 342 PRAIVVVDTVPRAPSGK 358
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365 |
| >gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | Back alignment and domain information |
|---|
Score = 99.6 bits (249), Expect = 5e-22
Identities = 49/129 (37%), Positives = 71/129 (55%), Gaps = 3/129 (2%)
Query: 430 GWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADE 489
G+Y TGD + D YI I R D+I G + + E+E+ + HPAV EA+VV D+
Sbjct: 475 GYYFTGDGARRDKDGYIWITGRVDDVINVSGHRLGTAEIESALVSHPAVAEAAVVGIPDD 534
Query: 490 RWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQ 548
G++ AFVTLK + +E L +++ K R ++ P I F P LPKT +GKI
Sbjct: 535 IKGQAIYAFVTLKDGYEPDDE--LRKELRKHVRKEIGPIAKPDKIRFVPGLPKTRSGKIM 592
Query: 549 KHVLRAKAK 557
+ +LR A
Sbjct: 593 RRLLRKIAA 601
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625 |
| >gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 98.9 bits (247), Expect = 9e-22
Identities = 55/174 (31%), Positives = 81/174 (46%), Gaps = 33/174 (18%)
Query: 317 TAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGV 376
+ GA P +LH G + YGL+ET +V PP+ R +
Sbjct: 360 SGGAPLSPELLHFFRSLGIPILEGYGLTETSAVVSV---------NPPD-------RFVL 403
Query: 377 RFIGLEKLDVIDTRTQQPVP-ADGKTI--GEIVMSGNVVMKGYLKNPKANEETF-ANGWY 432
+G +P+P + K GEI++ G VMKGY KNP+A E F +GW+
Sbjct: 404 GTVG------------KPLPGIEVKIADDGEILVRGPNVMKGYYKNPEATAEAFTEDGWF 451
Query: 433 HTGDLGVKHPDNYIEIKDRSKDIII-SGGENISSVEVENMMYLHPAVLEASVVA 485
TGDLG D Y+ I R K++I S G+NI+ +E+ + P + + VV
Sbjct: 452 RTGDLGELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVG 505
|
Length = 613 |
| >gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 97.8 bits (243), Expect = 2e-21
Identities = 127/533 (23%), Positives = 207/533 (38%), Gaps = 59/533 (11%)
Query: 42 GSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVN 101
G++ + + LA+ L +S+ G V +I+ N P Y + GA+ +
Sbjct: 38 GTSALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSVLACAKLGAIAVMAD 97
Query: 102 IRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDP 161
L I + A +V K+A A+ P L I + D
Sbjct: 98 GNLPIAAIERFCQITDPAAALVAPGS-KMASSAV------------PEALHSIPVIAVD- 143
Query: 162 KDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAY 221
+ E E L + ++ +A+ +TSGTT PK V+L++R +
Sbjct: 144 ------IAAVTRESEHSLDAASLAGNADQGSED--PLAMIFTSGTTGEPKAVLLANRTFF 195
Query: 222 -----LMSLSVALI-WGMNEGAVYLWTLPMFHCNG-WCYTWSLAALCGTSICLR--QVTA 272
L + + W + E LP H G W W L L +C+ + T
Sbjct: 196 AVPDILQKEGLNWVTWVVGETTYS--PLPATHIGGLW---WILTCLMHGGLCVTGGENTT 250
Query: 273 KAVYSAIAKYGVTHFCAAPVVLNSIVNA-PSEDTILP-LPHVVHVNTAGAAPPPSVLHAM 330
++ + V C P +L+ +V+ S + +P L V + + A + A
Sbjct: 251 -SLLEILTTNAVATTCLVPTLLSKLVSELKSANATVPSLRLVGYGGSRAIAADVRFIEA- 308
Query: 331 SQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGV---RFIGLEKLDVI 387
G YGLSET G + +C LP + + +K G + G++ +
Sbjct: 309 --TGVRTAQVYGLSET-GCTALC--------LPTDDGSIVKIEAGAVGRPYPGVDVY-LA 356
Query: 388 DTRTQQPVPADG---KTIGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDN 444
T P + G + + M GY NP+ E +GW +TGDL + D
Sbjct: 357 ATDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVLIDGWVNTGDLLERREDG 416
Query: 445 YIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPE 504
+ IK RS ++II GG NI+ EV+ + V EA+ DE +G V E
Sbjct: 417 FFYIKGRSSEMIICGGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFGALVGLAVVASAE 476
Query: 505 VDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLRAKA 556
+D+S + L I R + P +IV +P+T +GK+ + L A A
Sbjct: 477 LDESAARALKHTIAARFRRESEPMARPSTIVIVTDIPRTQSGKVMRASLAAAA 529
|
Length = 540 |
| >gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 98.5 bits (246), Expect = 3e-21
Identities = 102/384 (26%), Positives = 161/384 (41%), Gaps = 54/384 (14%)
Query: 202 YTSGTTASPKGVVLSHRGAYLMS--LSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAA 259
++SG+ PKGV+LSH ++S ++ ++ + V L +LP FH G T L
Sbjct: 789 FSSGSEGEPKGVMLSHHN--ILSNIEQISDVFNLRNDDVILSSLPFFHSFGLTVTLWLPL 846
Query: 260 LCG-TSICLRQVT-AKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLP----HVV 313
L G + T A + +AK+ T P L + + PL +V
Sbjct: 847 LEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKK---LHPLMFASLRLV 903
Query: 314 HVNTAGAAP-PPSVLHAMSQKGFHVT--HTYGLSETYGPSTVCAWKPEWDSLPPETQARM 370
AGA P V A +K F + YG +ET ++V P D L + + +
Sbjct: 904 ---VAGAEKLKPEVADAFEEK-FGIRILEGYGATETSPVASVNL--P--DVLAADFKRQT 955
Query: 371 KARQGVRFIGLE----KLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNP-KANE- 424
+++G +G+ + ++D T + +P G I++ G VMKGYL +P K E
Sbjct: 956 GSKEGS--VGMPLPGVAVRIVDPETFEELPP--GEDGLILIGGPQVMKGYLGDPEKTAEV 1011
Query: 425 --ETFANGWYHTGDLGVKHPDNYIEIKDR----SKDIIISGGENIS--SVEVENMMYLHP 476
+ GWY TGD G D ++ I DR +K I GGE + +VE E L
Sbjct: 1012 IKDIDGIGWYVTGDKGHLDEDGFLTITDRYSRFAK-I---GGEMVPLGAVEEELAKALGG 1067
Query: 477 AVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVF 536
+ +V A DE+ GE T E + ++ + E + +P W P
Sbjct: 1068 EEVVFAVTAVPDEKKGEKLVVLHTCGAEDVEELKRAIKE-------SGLPNLWKPSRYFK 1120
Query: 537 G-PLPKTATGKIQKHVLRAKAKEM 559
LP +GK+ L+ A +
Sbjct: 1121 VEALPLLGSGKLDLKGLKELALAL 1144
|
Length = 1146 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 98.1 bits (244), Expect = 4e-21
Identities = 126/549 (22%), Positives = 198/549 (36%), Gaps = 72/549 (13%)
Query: 25 FLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIY 84
+RA P +VV + T+ + +R RLA AL R +G V I +
Sbjct: 4557 VAERARM-TPDAVAVVFDEEKLTYAELNRRANRLAHALIARGVGPEVLVGIAMERSAEMM 4615
Query: 85 EAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNG 144
V AG ++ +A+++ S +A+++ +
Sbjct: 4616 VGLLAVLKAGGAYVPLDPEYPRERLAYMMEDSGAALLL-------------------TQS 4656
Query: 145 RFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIA-LGYT 203
L I G S AL R ++E F DP P ++A + YT
Sbjct: 4657 HLLQRLPIPDGLAS-------LALDR-DEDWEGFPAH-DPAVRLHP-----DNLAYVIYT 4702
Query: 204 SGTTASPKGVVLSHRGAYLMSLSVALIW-----GMN-EGAVYLWTLPMFHCNGWCYTWSL 257
SG+T PKGV +SH SL L + + V + F + L
Sbjct: 4703 SGSTGRPKGVAVSHG-----SLVNHLHATGERYELTPDDRVLQFMSFSFDGSHEGLYHPL 4757
Query: 258 AALCGTSICLRQVTA---KAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVH 314
G S+ +R + + +Y+ I ++ VT PV L + D P +
Sbjct: 4758 I--NGASVVIRDDSLWDPERLYAEIHEHRVTVLVFPPVYLQQLAEHAERDG--EPPSLRV 4813
Query: 315 VNTAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQ 374
G A + + L YGP+ W + +
Sbjct: 4814 YCFGGEAVAQASY----DLAWRALKPVYLFNGYGPTETTVTVLLWKARDGDACGAAYMPI 4869
Query: 375 GVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETF------A 428
G +G V+D + P+P GE+ + G V +GYL+ P E F A
Sbjct: 4870 G-TPLGNRSGYVLDGQL-NPLPVGV--AGELYLGGEGVARGYLERPALTAERFVPDPFGA 4925
Query: 429 NG--WYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVAR 486
G Y TGDL D I+ R + G I E+E + HPAV EA V+A+
Sbjct: 4926 PGGRLYRTGDLARYRADGVIDYLGRVDHQVKIRGFRIELGEIEARLREHPAVREAVVIAQ 4985
Query: 487 ADERWGESPCAFVTLKPEVDKSNEQQ--LAEDIMKFCRAKMPAYWVPKSIVF-GPLPKTA 543
+ V P + ++E Q L +++ R ++P Y VP +VF +P T
Sbjct: 4986 EGAVGKQLVGYVVPQDPALADADEAQAELRDELKAALRERLPEYMVPAHLVFLARMPLTP 5045
Query: 544 TGKIQKHVL 552
GK+ + L
Sbjct: 5046 NGKLDRKAL 5054
|
Length = 5163 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 96.9 bits (241), Expect = 1e-20
Identities = 124/545 (22%), Positives = 194/545 (35%), Gaps = 89/545 (16%)
Query: 34 PTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMA 93
P +VV G ++ + R RLA L R +G VAI A + A V A
Sbjct: 2017 PEAIAVVFGDQHLSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKA 2076
Query: 94 GAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIV 153
G ++ A +A++L S +A+++ + E L + +
Sbjct: 2077 GGAYVPLDPNYPAERLAYMLEDSGAALLLTQRH----LLERLPLPAGVARLPLDRDA--- 2129
Query: 154 IGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIA-LGYTSGTTASPKG 212
E+ + T P +++A + YTSG+T PKG
Sbjct: 2130 --------------------EWADYPDT-APAVQLAG-----ENLAYVIYTSGSTGLPKG 2163
Query: 213 VVLSHRGAYLMSL-SVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAALCGTSICLR--- 268
V +SH GA + + + ++ L + F +G W L G + +R
Sbjct: 2164 VAVSH-GALVAHCQAAGERYELSPADCELQFMS-FSFDGAHEQWFHPLLNGARVLIRDDE 2221
Query: 269 QVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLH 328
+ +Y + ++GVT PV L + H G P V
Sbjct: 2222 LWDPEQLYDEMERHGVTILDFPPVYLQQLAE--------------HAERDGRPPAVRVYC 2267
Query: 329 ----AMSQKGFHVTH----TYGLSETYGPS----TVCAWKPEWDSLPPETQARMKARQGV 376
A+ + L YGP+ T WK P A +
Sbjct: 2268 FGGEAVPAASLRLAWEALRPVYLFNGYGPTEAVVTPLLWKCRPQD--PCGAAYVPIG--- 2322
Query: 377 RFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETF------ANG 430
R +G + ++D + GE+ + G + +GYL P E F A+G
Sbjct: 2323 RALGNRRAYILDADL-NLLAPGM--AGELYLGGEGLARGYLNRPGLTAERFVPDPFSASG 2379
Query: 431 --WYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARAD 488
Y TGDL D +E R + G I E+E + HPAV EA VVA+ D
Sbjct: 2380 ERLYRTGDLARYRADGVVEYLGRIDHQVKIRGFRIELGEIEARLQAHPAVREAVVVAQ-D 2438
Query: 489 ERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVF-GPLPKTATGKI 547
G+ A+V V + L ++ + A++PAY VP V LP GK+
Sbjct: 2439 GASGKQLVAYV-----VPDDAAEDLLAELRAWLAARLPAYMVPAHWVVLERLPLNPNGKL 2493
Query: 548 QKHVL 552
+ L
Sbjct: 2494 DRKAL 2498
|
Length = 5163 |
| >gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 94.1 bits (234), Expect = 2e-20
Identities = 51/172 (29%), Positives = 83/172 (48%), Gaps = 21/172 (12%)
Query: 397 ADGKTI--GEIVMSGNVVMK------GYLKNPKANEETFANGWYHTGDLGVKHPDNYIEI 448
G+ + GEI G V +K GY+ E A+GW D+G + + +I I
Sbjct: 323 EAGEEVQKGEI---GTVYVKSPQFFMGYIIGGVLARELNADGWMTVRDVGYEDEEGFIYI 379
Query: 449 KDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKS 508
R K++I+ GG NI E+E++++ HPAV E V+ D WGE P A + +
Sbjct: 380 VGREKNMILFGGINIFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIK-----GSA 434
Query: 509 NEQQLAEDIMKFCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLRAKAKEM 559
+QQL FC ++ ++ +PK F +P T +GKI + ++ +
Sbjct: 435 TKQQLK----SFCLQRLSSFKIPKEWHFVDEIPYTNSGKIARMEAKSWIENQ 482
|
Length = 487 |
| >gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 94.6 bits (235), Expect = 2e-20
Identities = 101/463 (21%), Positives = 162/463 (34%), Gaps = 63/463 (13%)
Query: 18 MALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIA 77
+ LT + A P ++V G + T+ + R RLA L +G G TVAI+A
Sbjct: 225 LRLTIHLLFEEQAATTPDAVALVRGGQQLTYAELDARANRLARLLISLGVGPGETVAILA 284
Query: 78 PNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKI 137
+ A V AGA ++ A +A++L S +++ L + + +
Sbjct: 285 DRSLELVVALLAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQAH---LRVDDVGL 341
Query: 138 MEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQS 197
P L + S P DP
Sbjct: 342 -----------PGLALDDALSEIPDT-------------------DPIPQALLGDA---- 367
Query: 198 IALG-YTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWS 256
+A YTSG+T PKGV + HR + +G++ L L + +
Sbjct: 368 LAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFGLDADDRVL-ALASLSFDASVFEIF 426
Query: 257 LAALCGTSICLR----QVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSE-DTILPLPH 311
A L G + L QV A+ + G+T P++L ++ A D I P
Sbjct: 427 GALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPDLISPCER 486
Query: 312 VVHVNTAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMK 371
+ + + G A P +++ + Q L YGP+ P +
Sbjct: 487 LRQLLSGGEALPLALVQRLLQLAALARR---LLNLYGPTEATLDAPSFP--------ISA 535
Query: 372 ARQGVRFIGLEKLD----VIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEE-T 426
+ IG + ++D +P+P G GE+ ++G + GYL P E
Sbjct: 536 ELESRVPIGRPVANTQLYILDQG-LRPLP-LG-VPGELYIAGLGLALGYLNRPDLTAERF 592
Query: 427 FANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVE 469
A Y TGDL D +E R + G I E+E
Sbjct: 593 IALRLYRTGDLARPLADGALEYLGRKDSQVKIRGFRIELGEIE 635
|
Length = 642 |
| >gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS) | Back alignment and domain information |
|---|
Score = 93.2 bits (232), Expect = 6e-20
Identities = 71/217 (32%), Positives = 96/217 (44%), Gaps = 31/217 (14%)
Query: 313 VHVNTAGAAP-PPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMK 371
GAAP L + YG+SET GP TV P Q
Sbjct: 320 CQKFFTGAAPISRETLEFFLSLNIPIMELYGMSETSGPHTVS--------NP---QNYRL 368
Query: 372 ARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETF-ANG 430
G G E T+ P ADG IGEI + G V GYL + EE +G
Sbjct: 369 LSCGKALPGCE------TKIHNP-DADG--IGEICIWGRHVFMGYLNMEEKTEEAIDEDG 419
Query: 431 WYHTGDLGVKHPDNYIEIKDRSKDIII-SGGENISSVEVENMMYLH-PAVLEASVVARAD 488
W H+GDLG D ++ I R K++II +GGEN+ V +E + P + A +V D
Sbjct: 420 WLHSGDLGFLDDDGFLYITGRIKELIITAGGENVPPVPIEEAVKKELPIISNAMLV--GD 477
Query: 489 ERWGESPCAFVTLKPEVD-KSNEQ--QLAEDIMKFCR 522
+R + +TLK EVD ++ E L E+ ++FCR
Sbjct: 478 KR--KFLSMLLTLKCEVDPETGEPLDNLTEEAIEFCR 512
|
This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594 |
| >gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Score = 90.2 bits (224), Expect = 4e-19
Identities = 133/562 (23%), Positives = 223/562 (39%), Gaps = 100/562 (17%)
Query: 26 LDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYE 85
+ A +P + + T+ Q ++ RLA+ + KR + + + P
Sbjct: 6 IQAFAETYPQTIAYRYQGQELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEP---- 61
Query: 86 AHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGR 145
H V G++ + GH A I VD + E ++++ E +
Sbjct: 62 -HMLVAFLGSIKS---------------GH---AYIPVDTS---IPSERIEMIIEAA--- 96
Query: 146 FKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFD-WKPPQDEWQSIALGYTS 204
P L+I + S D + + + + G FD D + I YTS
Sbjct: 97 -GPELVIHTAELSIDAVGTQ--IITLSALEQAETSGGPVSFDHAVKGDDNYYII---YTS 150
Query: 205 GTTASPKGVVLSHRGAYLMSLSVALI--WGMNEGAVYLWTLPMFHCNGWCYTWSLA---- 258
G+T +PKGV +SH L+S + ++ + ++EG +L P +++ L+
Sbjct: 151 GSTGNPKGVQISH--DNLVSFTNWMLADFPLSEGKQFLNQAP--------FSFDLSVMDL 200
Query: 259 ----ALCGTSICL-RQVTA--KAVYSAIAKYGVTHFCAAPVVLNSIVNAPS--EDTILPL 309
A GT CL + +T K ++ + K G+ + + P ++ + P+ ++
Sbjct: 201 YPCLASGGTLHCLDKDITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPNFNQEN---Y 257
Query: 310 PHVVHVNTAGAAPPPSVLHAMSQKGF---HVTHTYGLSETYGPSTVCAWKPE----WDSL 362
PH+ H G P A+ ++ F + +TYG +E T E + L
Sbjct: 258 PHLTHFLFCGEELPVKTAKALLER-FPKATIYNTYGPTEATVAVTSVKITQEILDQYPRL 316
Query: 363 PPETQARMKARQGVRFIGLEKLDV---IDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKN 419
P IG K D+ I +P+P K GEIV+ G V KGYL N
Sbjct: 317 P---------------IGFAKPDMNLFIMDEEGEPLPEGEK--GEIVIVGPSVSKGYLNN 359
Query: 420 PKANEETF--ANGW--YHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLH 475
P+ E F G Y TGD G D + + R I G I ++E +
Sbjct: 360 PEKTAEAFFSHEGQPAYRTGDAG-TITDGQLFYQGRLDFQIKLHGYRIELEDIEFNLRQS 418
Query: 476 PAVLEASVVARADERWG-ESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSI 534
+ A VV + ++ E A + + E D E QL + I K + +PAY +P+
Sbjct: 419 SYIESAVVVPKYNKDHKVEYLIAAIVPETE-DFEKEFQLTKAIKKELKKSLPAYMIPRKF 477
Query: 535 VF-GPLPKTATGKIQKHVLRAK 555
++ LP TA GKI + L +
Sbjct: 478 IYRDQLPLTANGKIDRKALAEE 499
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502 |
| >gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 89.8 bits (224), Expect = 8e-19
Identities = 46/129 (35%), Positives = 69/129 (53%), Gaps = 3/129 (2%)
Query: 430 GWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADE 489
G Y TGD + D Y I R D++ G + + E+E+ + HP V EA+VV R D+
Sbjct: 483 GMYFTGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKVAEAAVVGRPDD 542
Query: 490 RWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQ 548
G+ AFVTLK + S +L +++ + R ++ P I F P LPKT +GKI
Sbjct: 543 IKGQGIYAFVTLKGGEEPS--DELRKELRNWVRKEIGPIAKPDVIQFAPGLPKTRSGKIM 600
Query: 549 KHVLRAKAK 557
+ +LR A+
Sbjct: 601 RRILRKIAE 609
|
Length = 637 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 90.6 bits (225), Expect = 9e-19
Identities = 90/367 (24%), Positives = 143/367 (38%), Gaps = 33/367 (8%)
Query: 202 YTSGTTASPKGVVLSHRG--AYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAA 259
YTSG+T PKGV +SH Y+ ++ L ++ ++ + + F +LA+
Sbjct: 663 YTSGSTGQPKGVAISHGALANYVCVIAERLQLAADD-SMLMVSTFAFDLGVTELFGALAS 721
Query: 260 LCGTSICL--RQVT--AKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHV 315
G ++ L A+A + +A GVT P L +++ A P +V
Sbjct: 722 --GATLHLLPPDCARDAEAFAALMADQGVTVLKIVPSHLQALLQASRVALPRPQRALV-- 777
Query: 316 NTAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWD-SLPPETQARMKARQ 374
G A +L + G L YGP+ ++ S + Q
Sbjct: 778 -CGGEALQVDLLARVRALGPGA----RLINHYGPTETTVGVSTYELSDEERDFGNVPIGQ 832
Query: 375 GVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETF------A 428
+ +GL LD PVP +GE+ + G + +GY + P E F A
Sbjct: 833 PLANLGLYILD----HYLNPVP--VGVVGELYIGGAGLARGYHRRPALTAERFVPDPFGA 886
Query: 429 NG--WYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVAR 486
+G Y TGDL D IE R + G I E+E + P V EA V+A+
Sbjct: 887 DGGRLYRTGDLARYRADGVIEYLGRMDHQVKIRGFRIELGEIEARLLAQPGVREAVVLAQ 946
Query: 487 ADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVF-GPLPKTATG 545
G A++ D + Q +++ R +P Y VP ++ LP T G
Sbjct: 947 -PGDAGLQLVAYLVPAAVADGAEHQATRDELKAQLRQVLPDYMVPAHLLLLDSLPLTPNG 1005
Query: 546 KIQKHVL 552
K+ + L
Sbjct: 1006 KLDRKAL 1012
|
Length = 3956 |
| >gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | Back alignment and domain information |
|---|
Score = 88.4 bits (220), Expect = 2e-18
Identities = 58/187 (31%), Positives = 86/187 (45%), Gaps = 23/187 (12%)
Query: 386 VIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETF-------ANGWYHTGDLG 438
++D T++P+P +GEI + G V GY P+A ETF GW TGDLG
Sbjct: 368 IVDPETRRPLPDG--EVGEIWVRGPSVAAGYWNRPEATAETFGARLATDEGGWLRTGDLG 425
Query: 439 VKHPDNYIEIKDRSKDIIISGGENISSVEVENMMY-LHPAVLEASVVARADERWGESPCA 497
H D + + R KD+II G N ++E + HPA+ + A + + GE
Sbjct: 426 FLH-DGELYVTGRLKDLIIIRGRNHYPQDIEATVERAHPALRPGAAAAFSVDGDGEERLV 484
Query: 498 FVT-LKPEVDKSNEQQLAEDIMKFCRAKMPAYWV-PKSIVFGP---LPKTATGKIQKHVL 552
V ++ ++ LAE I A + V P +V LPKT++GKIQ
Sbjct: 485 VVAEVRRRGLPADLAALAEAI---RAAVAREHGVAPADVVLVRPGTLPKTSSGKIQ---- 537
Query: 553 RAKAKEM 559
R +E+
Sbjct: 538 RRACREL 544
|
FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547 |
| >gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 86.8 bits (216), Expect = 4e-18
Identities = 129/523 (24%), Positives = 195/523 (37%), Gaps = 121/523 (23%)
Query: 18 MALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIA 77
M + W A V P ++ TW Q R +LA+ ++ + G VA+
Sbjct: 1 MMIFSDWPWRHWAQVRPQAIALRLNDEVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRG 60
Query: 78 PNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKI 137
N P A+ + GA + +N +L P + LL +V + +
Sbjct: 61 KNSPETLLAYLALLQCGARVLPLNPQLPQPLLEELLPSLTLDFALVLEGENTFSALTSLH 120
Query: 138 MEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQS 197
++ G W+P Q
Sbjct: 121 LQL---------------------------------------VEGAHAVAWQP-----QR 136
Query: 198 IA-LGYTSGTTASPKGVVLSHRGAYLMS----LSVALIWGMNEGA--VYLWTLPMFHCNG 250
+A + TSG+T PK V + + A+L S LS+ M A +L +LP+FH +G
Sbjct: 137 LATMTLTSGSTGLPKAAVHTAQ-AHLASAEGVLSL-----MPFTAQDSWLLSLPLFHVSG 190
Query: 251 ----WCYTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTI 306
W W L A G ++ +R + + A+A G TH P L +++ SE
Sbjct: 191 QGIVW--RW-LYA--GATLVVR--DKQPLEQALA--GCTHASLVPTQLWRLLDNRSEPLS 241
Query: 307 LPLPHVVHVNTAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPET 366
L V GAA P + Q+G YGL+E STVCA K D L
Sbjct: 242 LK-----AVLLGGAAIPVELTEQAEQQGIRCWCGYGLTEM--ASTVCA-K-RADGLA--- 289
Query: 367 QARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTI----GEIVMSGNVVMKGYLKN--- 419
GV G P+P G+ + GEI + G + GY +
Sbjct: 290 --------GV---G------------SPLP--GREVKLVDGEIWLRGASLALGYWRQGQL 324
Query: 420 -PKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAV 478
P N+E GW+ T D G + + I R ++ SGGE I E+E ++ HP V
Sbjct: 325 VPLVNDE----GWFATRDRGEWQ-NGELTILGRLDNLFFSGGEGIQPEEIERVINQHPLV 379
Query: 479 LEASVVARADERWGESPCAFVTLKPEVDKSN-EQQLAEDIMKF 520
+ VV AD +G+ P A V E N + L + + +F
Sbjct: 380 QQVFVVPVADAEFGQRPVAVVESDSEAAVVNLAEWLQDKLARF 422
|
Length = 458 |
| >gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase | Back alignment and domain information |
|---|
Score = 85.3 bits (212), Expect = 1e-17
Identities = 118/547 (21%), Positives = 180/547 (32%), Gaps = 147/547 (26%)
Query: 34 PTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMA 93
P ++ ++ + +R +LA+ L +G G V ++ + A + A
Sbjct: 1 PDAIALRDDDRTLSYAELDERSNQLAARLRALGVGPGDRVGVLLERSADLVAALLAILKA 60
Query: 94 GAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIV 153
GA ++ A + ++L + A+++
Sbjct: 61 GAAYVPLDPSYPAERLQYMLEDAEPALLL------------------------------- 89
Query: 154 IGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGV 213
DP DL Y + YTSG+T PKGV
Sbjct: 90 -----TDPDDLAYVI---------------------------------YTSGSTGKPKGV 111
Query: 214 VLSHRGAYLMSLSVALIWGMNEGAVYLWT---------LPMFHCNGWCYTWSLAALCGTS 264
+SHR LS+A G+ L L + L L G +
Sbjct: 112 EVSHRALVNFLLSMARRPGLGASDRLLAVTTISFDISVLELL----------LPLLSGAT 161
Query: 265 --ICLRQVT--AKAVYSAIAKYGVTHFCAAPVVLNSIVNA---PSED-TILPLPHVVHVN 316
I + + + IA +T A P ++ A E T L
Sbjct: 162 VVIASAETVRDPERLARLIADERITIMQATPATWRMLLAAGWRGRESLTAL--------- 212
Query: 317 TAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTV--CAWKPEWDSLPPETQARMKARQ 374
G A P + + G + + YG +ET T+ + P
Sbjct: 213 CGGEALPRDLAERLLSTGAELWNMYGPTET----TIWSTCARVTAADGPVT--------- 259
Query: 375 GVRFIGLEKLD-----VIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFAN 429
IG + V+D QPVP GE+ + G+ V +GYL P+ E F
Sbjct: 260 ----IG-RPIANTQVYVLD-EDLQPVPPG--VPGELYIGGDGVARGYLGRPELTAERFVP 311
Query: 430 G--------WYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEA 481
Y TGDL PD +E R+ D + G I E+E + HP V +A
Sbjct: 312 DPFDDPGGRLYRTGDLVRWRPDGRLEYLGRADDQVKIRGFRIELGEIEAALRAHPGVADA 371
Query: 482 SVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LP 540
VV R + + A+V K AE + RA +PAY VP + V LP
Sbjct: 372 VVVVREEGPGDQRLVAYVVPKAGAAPD-----AEALRAALRATLPAYMVPAAFVQLDELP 426
Query: 541 KTATGKI 547
T GK+
Sbjct: 427 LTPNGKV 433
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 86.5 bits (214), Expect = 2e-17
Identities = 127/584 (21%), Positives = 197/584 (33%), Gaps = 99/584 (16%)
Query: 7 IDDLPK-NAANYMALTPLWFLDRAAT-----VH----------PTRTSVVHGSTRYTWLQ 50
+D+LP +A L W A VH P ++ G + +
Sbjct: 482 VDELPMLDAEERGQLVEGWNATAAEYPLQRGVHRLFEEQVERTPEAPALAFGEETLDYAE 541
Query: 51 TYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIA 110
+R RLA AL +R +G V + + A + AG ++ A +A
Sbjct: 542 LNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAYVPLDPEYPAERLA 601
Query: 111 FLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGR 170
++L S +++ L + G + L R
Sbjct: 602 YMLEDSGVQLLLSQS-------------------HLGRKLPLAAGVQ-------VLDLDR 635
Query: 171 GAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALI 230
A E + +P + P + + YTSG+T PKG HR +LS L
Sbjct: 636 PAAWLEGY-SEENPGTELNPENLAY----VIYTSGSTGKPKGAGNRHR-----ALSNRLC 685
Query: 231 W-----GMNEGAVYLWTLPM-FHCNGWCYTWSLAALCGTSICL----RQVTAKAVYSAIA 280
W G+ G L P F + W + W L + G + + + I
Sbjct: 686 WMQQAYGLGVGDTVLQKTPFSFDVSVWEFFWPLMS--GARLVVAAPGDHRDPAKLVELIN 743
Query: 281 KYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQKGF--HVT 338
+ GV P +L + + + L +V +G A P + K +
Sbjct: 744 REGVDTLHFVPSMLQAFLQDEDVASCTSLRRIV---CSGEALPADAQEQVFAKLPQAGLY 800
Query: 339 HTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPAD 398
+ YG +E T E P R I ++D +PVP
Sbjct: 801 NLYGPTEAAIDVTHWTCVEEGGDSVPIG----------RPIANLACYILDANL-EPVPV- 848
Query: 399 GKTIGEIVMSGNVVMKGYLKNPKANEETF-----ANG--WYHTGDLGVKHPDNYIEIKDR 451
+GE+ ++G + +GY P E F G Y TGDL D IE R
Sbjct: 849 -GVLGELYLAGRGLARGYHGRPGLTAERFVPSPFVAGERMYRTGDLARYRADGVIEYAGR 907
Query: 452 SKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQ 511
+ G I E+E + HP V EA+V+A G+ +V L +S
Sbjct: 908 IDHQVKLRGLRIELGEIEARLLEHPWVREAAVLAVD----GKQLVGYVVL-----ESEGG 958
Query: 512 QLAEDIMKFCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLRA 554
E + A +P Y VP + LP T GK+ + L A
Sbjct: 959 DWREALKAHLAASLPEYMVPAQWLALERLPLTPNGKLDRKALPA 1002
|
Length = 5163 |
| >gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA) | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 8e-17
Identities = 93/410 (22%), Positives = 153/410 (37%), Gaps = 89/410 (21%)
Query: 202 YTSGTTASPKGVVLSHRG--AYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAA 259
++SG+T PKGV+L+H+ + ++ A + V+L +P+ H G
Sbjct: 113 FSSGSTGEPKGVILTHKNLLTNIEAIIEA--AEITSEDVFLSWMPLTHDMGLIGFHLTPT 170
Query: 260 LCGTSIC--------------LRQVTA-KAVYSAIAKYGVTHFCAAPVVLNSIVNAPSED 304
G + L + + +A + +G + L D
Sbjct: 171 ALGINQYLMPTRLFIRRPLLWLDKASQHRATILSSPNFGYKYL------LKHFKTEKIID 224
Query: 305 TILPLPHVVHVNT-AGAAPPPSV------LHAMSQKGFHVTHT-----YGLSETYGPSTV 352
L V A P S L M+ F + YGL+E +T+
Sbjct: 225 WDLS-----SVRLIFNGAEPISADLCEEFLEKMAP--FGLRPNAMYPVYGLAE----ATL 273
Query: 353 CAWKPEWDSLPPET---------------QARMKARQGVRFIGLEK-LDVIDTRTQQPVP 396
P+ P +T + K + F+ + +D + R V
Sbjct: 274 AVSFPKPGE-PFKTVCLDRNHLKVGVKIIEIDPKNSDAISFVEVGSPIDGCEIRI---VD 329
Query: 397 ADGK-----TIGEIVMSGNVVMKGYLKNPKANEETFA-NGWYHTGDLGVKHPDNYIEIKD 450
G+ TIG I + G+ V GY NP+A +++ +GW TGDLG + + I
Sbjct: 330 DAGEVLPDRTIGHIQIKGDNVTSGYYNNPEATKKSITPDGWLKTGDLGFLR-NGRLVITG 388
Query: 451 RSKDIIISGGENISSVEVENMMYLHPAVLEASVVA---RADERWGESPCAFVTLKPEVDK 507
R+KDIII G+N ++E + + V A ++ E FV + +D
Sbjct: 389 RAKDIIIVNGQNYYPHDIERVAEQVEGIKLGRVAACGVYDEKEQSEEVVIFVEYRQSLDD 448
Query: 508 SNEQQLAEDIMKFCRAKMP---AYWVP-KSIVFGPLPKTATGKIQKHVLR 553
LA I + KM + +P +SI PKT +GKIQ++ L
Sbjct: 449 FTP--LALKIKRHVNKKMGLNIDHVIPVRSI-----PKTTSGKIQRYKLA 491
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499 |
| >gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase | Back alignment and domain information |
|---|
Score = 83.4 bits (206), Expect = 8e-17
Identities = 135/587 (22%), Positives = 218/587 (37%), Gaps = 88/587 (14%)
Query: 26 LDRAATVHPTRTSVVHGSTR------YTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPN 79
LDR + ++V S+ T+ Q ++ ASAL +G G V I P
Sbjct: 58 LDRHLDERGEQLALVTVSSETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPM 117
Query: 80 IPAIYEAHF------------GVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEY 127
I EA F V G +++ +R++ T ++ A Y
Sbjct: 118 IA---EAVFAMLACARIGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPY 174
Query: 128 FKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDP------KDLKYALGR-----GAVEYE 176
L + A+ + + PP ++++ D P +D+ YA R V E
Sbjct: 175 KPLLDAAI------AEAQHPPPHVLLV-DRGLAPMRLIPGRDVDYAALRTQHEDAQVPVE 227
Query: 177 KFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRG-AYLMSLSVALIWGMNE 235
+L++ +P + + YTSGTT PKGV G A ++LS+ I+G+
Sbjct: 228 -WLESNEPSY-------------ILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRA 273
Query: 236 GAVYLWTLPMFHCNGWCYTWSLAALCGTSICLRQVT-----AKAVYSAIAKYGVTHFCAA 290
G V + G Y L G + L + +S + +YGV +A
Sbjct: 274 GQVMFSASDVGWVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSA 333
Query: 291 PVVLNSIVNAPSEDTILPLPH---VVHVNTAGAAP--PPSVLHAMSQKGFHVTHTYGLSE 345
P + + +D H +H P P+ G V Y +E
Sbjct: 334 PTAIRVL---KKQDAAWLRKHDLSSLHWLFLAGEPLDEPTAHWITDGLGKPVIDNYWQTE 390
Query: 346 TYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEI 405
T P V A P D P + G+ G L V+D T +P + K G +
Sbjct: 391 TGWP--VLAIMPGLDLKPVKL-----GSPGLPMYGY-HLRVLDEATGRPCGPNEK--GVL 440
Query: 406 VMSG-------NVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIIS 458
+ + V + K F Y + D G++ D Y I R+ D+I
Sbjct: 441 TVVPPLPPGCLSTVWGDDARFLKTYWSHFKRPLYSSFDWGIRDEDGYTFILGRTDDVINV 500
Query: 459 GGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEV---DKSNEQQLAE 515
G + + E+E + HP+V E +VV DE G+ F LK D + +
Sbjct: 501 AGHRLGTREIEESVSSHPSVAEVAVVGVHDELKGQVAVVFAILKESDSAGDAHDPHAVET 560
Query: 516 DIMKFCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLRAKAKEMGP 561
+M ++ A P + F LPKT +GK+ + ++A A+ P
Sbjct: 561 GMMDCVVRQLGAVARPARVYFVAALPKTRSGKLLRRSIQALAEGRDP 607
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 84.1 bits (208), Expect = 9e-17
Identities = 94/369 (25%), Positives = 144/369 (39%), Gaps = 42/369 (11%)
Query: 202 YTSGTTASPKGVVLSHRGAYLMSLSV-ALIWGMNEGAVYLWTLPM-FHCNGWCYTWSLAA 259
YTSG+T PKGV + H GA L A + ++ L + F + W+L
Sbjct: 3244 YTSGSTGKPKGVGVRH-GALANHLCWIAEAYELDANDRVLLFMSFSFDGAQERFLWTL-- 3300
Query: 260 LCGTSICLR---QVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVN 316
+CG + +R + ++ AI + ++ C P L L V
Sbjct: 3301 ICGGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDAGGADCASLDIYV--- 3357
Query: 317 TAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPS----TVCAWKPEWDSLPPETQARMKA 372
G A PP+ ++ GL+ YGP+ TV WK D++ A +
Sbjct: 3358 FGGEAVPPAAF----EQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAVCEAPYAPIG- 3412
Query: 373 RQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETF----- 427
R + + V+D + PVP GE+ + G + +GY + P E F
Sbjct: 3413 ----RPVAGRSIYVLDGQL-NPVPVG--VAGELYIGGVGLARGYHQRPSLTAERFVADPF 3465
Query: 428 -ANG--WYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVV 484
+G Y TGDL D IE R + G I E+E + HP+V EA V+
Sbjct: 3466 SGSGGRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLLQHPSVREAVVL 3525
Query: 485 ARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTA 543
AR D G+ A+V V + E + A +P Y VP ++ +P
Sbjct: 3526 AR-DGAGGKQLVAYV-----VPADPQGDWRETLRDHLAASLPDYMVPAQLLVLAAMPLGP 3579
Query: 544 TGKIQKHVL 552
GK+ + L
Sbjct: 3580 NGKVDRKAL 3588
|
Length = 3956 |
| >gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS) | Back alignment and domain information |
|---|
Score = 83.0 bits (206), Expect = 1e-16
Identities = 50/186 (26%), Positives = 84/186 (45%), Gaps = 33/186 (17%)
Query: 403 GEIVMSGNVVMKGYLKNPKANEETFA-NGWYHTGDLGVKHPDNYIEIKDRSKDII-ISGG 460
GEI + G V KGY KNP+ E F +GW+HTGD+G PD ++I DR K++ +S G
Sbjct: 351 GEICIRGPNVFKGYYKNPEKTAEAFDEDGWFHTGDIGEWLPDGTLKIIDRKKNLFKLSQG 410
Query: 461 ENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEV-----------DKS- 508
E ++ ++EN+ P V + V + + + A V +V
Sbjct: 411 EYVALEKLENIYKSSPLVDQICVYGDSLKSF---LVAIVVPDEDVLEKWAAENGGGGGDF 467
Query: 509 ----NEQQLAEDIMK-----FCRAKMPAYWVPKSIVFGPLP-------KTATGKIQKHVL 552
N ++L + I+K + + + K+I P P T T K+++ L
Sbjct: 468 EELCNNKKLKKAILKDLNEIGKENGLKGFEIVKAIHLTPEPFTPENGLLTPTFKLKRPQL 527
Query: 553 RAKAKE 558
+ + K+
Sbjct: 528 KKRYKK 533
|
The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539 |
| >gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 81.7 bits (202), Expect = 2e-16
Identities = 80/345 (23%), Positives = 132/345 (38%), Gaps = 45/345 (13%)
Query: 199 ALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLA 258
A+ +TSG+T PKGVV +HR ++ ++G+ EG L P F G
Sbjct: 89 AILFTSGSTGPPKGVVYTHRTFAAQIDALRSLYGIREGDRDLAAFPPFALFG-------P 141
Query: 259 ALCGTSI-------CLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPH 311
AL T++ + + AI + G + +P +L V E+ + LP
Sbjct: 142 ALGVTTVIPAMDPTAPAALDPAKLAQAIREIGASCVFGSPALL-KNVARYCEENGIQLPS 200
Query: 312 VVHVNTAGAAPPPSVLHA-----MSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPET 366
+ V +AGA PP +L M + H YG +E P E + E+
Sbjct: 201 LRRVLSAGAPVPPDLLRRFVANLMPEAEIHTP--YGATEAL-PVASI----EGREVLAES 253
Query: 367 QARMKARQGV-----------RFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKG 415
+A GV R I + I + G+ +GEI++SG V +
Sbjct: 254 AEPPEAGAGVCVGHPVPGIDVRIIPI-DDGPIASWDDDIELPPGE-VGEIIVSGPHVTRE 311
Query: 416 YLKNPKANEETFAN----GWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENM 471
Y P+A + + W+ GDLG + R + + G + +V VE +
Sbjct: 312 YYNRPEATKLAKISDGNRIWHRMGDLGYFDDQGRLWFCGRKAHRVETAGGTLFTVPVEQV 371
Query: 472 MYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAED 516
HP V +++V + ++P V P V ++
Sbjct: 372 FNRHPGVRRSALVG-VGKPGTQAPVLVVEPMPPVLDRRKRLEGRL 415
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455 |
| >gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 81.2 bits (201), Expect = 3e-16
Identities = 73/288 (25%), Positives = 113/288 (39%), Gaps = 22/288 (7%)
Query: 21 TPLWFLDRAATVHPTRTSVV----HGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAII 76
T L P +++ G T+ + Y+R R LAS L I G VAI
Sbjct: 17 TLPKRLAERVKDRPDGVALMYKELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIF 76
Query: 77 APNIPAIYEAHFGVPMAGAVLNAVNIR--LNAPTIAFLLGHSASAVIMVD-QEYFKLAEE 133
A N P A + GAV +V I +A++L S S VI V+ QE L
Sbjct: 77 AANRPEWAIADLAILALGAV--SVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLP 134
Query: 134 ALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFL-QTGDPQFDWKPPQ 192
L E ++I + E+ + K L FL + + PP+
Sbjct: 135 VL----EDCPKVVDLIVIIDLVREAVEAKALVLE-VFPDEGISLFLIDSAGLEGRIAPPK 189
Query: 193 DEWQSIA-LGYTSGTTASPKGVVLSHR--GAYLMSLSVALIWGMNEGAVYLWTLPMFHCN 249
+ +A + YTSGTT +PKGV+L+HR A + + L + G L LP+ H
Sbjct: 190 PD--DLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPP-IGPGDRVLSFLPLAHIF 246
Query: 250 GWCYTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSI 297
+ LA G ++ ++ + + + + T P V +
Sbjct: 247 ERAFEGGLALYGGVTVLFKEDP-RTLLEDLKEVRPTVMIGVPRVWEKV 293
|
Length = 613 |
| >gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 3e-16
Identities = 60/243 (24%), Positives = 86/243 (35%), Gaps = 46/243 (18%)
Query: 319 GAAPP-PSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVR 377
G AP PS+L Q + TYG++ET S + KP+ G
Sbjct: 238 GGAPAWPSLLEQARQLQLRLAPTYGMTET--ASQIATLKPD------------DFLAGNN 283
Query: 378 FIGLEKLDVIDTRTQQPVP-----ADGKTIGEIVMSGNVVMKGYLKNPKANEETFANGWY 432
G Q +P G I + + GY ++ F
Sbjct: 284 SSG------------QVLPHAQITIPANQTGNITIQAQSLALGYYPQILDSQGIFE---- 327
Query: 433 HTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWG 492
T DLG Y+ I R+ II+GGEN+ EVE + V + V+ D WG
Sbjct: 328 -TDDLGYLDAQGYLHILGRNSQKIITGGENVYPAEVEAAILATGLVQDVCVLGLPDPHWG 386
Query: 493 ESPCAFVTLKPEVDKSNE--QQLAEDIMKFCRAKMPAYWVPKSIVFGPLPKTATGKIQKH 550
E A K E + + + F K P +W+P LP+ GKI +
Sbjct: 387 EVVTAIYVPKDPSISLEELKTAIKDQLSPF---KQPKHWIPVP----QLPRNPQGKINRQ 439
Query: 551 VLR 553
L+
Sbjct: 440 QLQ 442
|
Length = 452 |
| >gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 81.2 bits (200), Expect = 4e-16
Identities = 137/609 (22%), Positives = 229/609 (37%), Gaps = 133/609 (21%)
Query: 36 RTSVVHGST-RYTWLQTYQRCR----RLASALCKRSIGL--GCTVAIIAPNIPAIYEAHF 88
R +V G +Y W QTYQ +L ++L RS+G+ I N P +
Sbjct: 66 RREIVDGKPGKYVW-QTYQEVYDIVIKLGNSL--RSVGVKDEAKCGIYGANSPEWIISME 122
Query: 89 GVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQ----EYFKLAEEALKIMEEKSNG 144
G + L A + F++ HS +++ V++ E FK + + M+
Sbjct: 123 ACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKT---- 178
Query: 145 RFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGD-PQFDWKPPQDEWQSIALGYT 203
++ G S + K+ G +++FL+ G+ Q+D P + + + YT
Sbjct: 179 ------VVSFGGVSREQKEEAETFGLVIYAWDEFLKLGEGKQYDL-PIKKKSDICTIMYT 231
Query: 204 SGTTASPKGVVLSHRGAYLMSLSVALIWG-----MNEGAVYLWTLPMFHCNGWCYTWSLA 258
SGTT PKGV++S+ + V + + VYL LP+ H
Sbjct: 232 SGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHIFDRVIEECFI 291
Query: 259 ALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVN------------------- 299
G +I + K + + + T FCA P VL+ + +
Sbjct: 292 QH-GAAIGFWRGDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDS 350
Query: 300 ------------------APSEDTIL------PLPHVVHVNTAGAAPPPSVLHAMSQ--K 333
+P D ++ L V + +GAAP S + + +
Sbjct: 351 AFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHVESFLRVVA 410
Query: 334 GFHVTHTYGLSETYGPSTVCAWKPEWDSL----PPETQARMKARQGVRFIGLEKLDVIDT 389
HV YGL+E+ T + E D L PP ++ LE + ++
Sbjct: 411 CCHVLQGYGLTESCA-GTFVSLPDELDMLGTVGPPVPNVDIR---------LESVPEMEY 460
Query: 390 RTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIK 449
P GEI + G + GY K +E +GW HTGD+G P+ ++I
Sbjct: 461 DALASTPR-----GEICIRGKTLFSGYYKREDLTKEVLIDGWLHTGDVGEWQPNGSMKII 515
Query: 450 DRSKDII-ISGGENISSVEVENM---------MYLHPAVLEASVVARAD------ERWGE 493
DR K+I +S GE ++ +EN+ ++++ E+ +VA A+ ERW
Sbjct: 516 DRKKNIFKLSQGEYVAVENIENIYGEVQAVDSVWVYGNSFESFLVAIANPNQQILERW-- 573
Query: 494 SPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGPLPKTATGKIQKHVLR 553
+ E ++ D C+ + K + G L K A K K
Sbjct: 574 --------------AAENGVSGDYNALCQNEK-----AKEFILGELVKMAKEKKMKGFEI 614
Query: 554 AKAKEMGPV 562
KA + PV
Sbjct: 615 IKAIHLDPV 623
|
Length = 666 |
| >gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 6e-16
Identities = 48/146 (32%), Positives = 71/146 (48%), Gaps = 8/146 (5%)
Query: 414 KGYLKNPKANEET----FANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVE 469
+G+ ++P+ ET F W H GD + D Y I RS D I G+ + E+E
Sbjct: 316 RGFWRDPERYLETYWSRFPGVWVH-GDWALVDEDGYWYILGRSDDTIKVAGKRVGPAEIE 374
Query: 470 NMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYW 529
+++ HPAV EA+ + D GE+ FV LKP V S L ++ + +
Sbjct: 375 SVLNSHPAVAEAAAIGVPDPVKGEAIVCFVVLKPGVTPSAA--LEAELADHVGDALGKPF 432
Query: 530 VPKSIVFGP-LPKTATGKIQKHVLRA 554
P+ + F LPKT GKI + V+RA
Sbjct: 433 RPREVHFVSDLPKTRNGKIMRRVIRA 458
|
This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 81.2 bits (200), Expect = 8e-16
Identities = 105/529 (19%), Positives = 172/529 (32%), Gaps = 71/529 (13%)
Query: 34 PTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMA 93
P ++ G R ++ + +R RLA L +R +G V + + + A
Sbjct: 3071 PDAVALAFGEQRLSYAELNRRANRLAHRLIERGVGPDVLVGVAVERSLEMVVGLLAILKA 3130
Query: 94 GAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIV 153
G ++ +A++L S A +++ Q + +L
Sbjct: 3131 GGAYVPLDPEYPEERLAYMLEDSG-AQLLLSQSHLRLPLAQ------------------- 3170
Query: 154 IGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGV 213
G + D L RG Y +P P + + YTSG+T PKGV
Sbjct: 3171 -GVQVLD-------LDRGDENY----AEANPAIRTMPENLAY----VIYTSGSTGKPKGV 3214
Query: 214 VLSHRGAYLMSLSVALIWGMNEGAVYLWTLPM-FHCNGWCYTWSLAALCGTSICLR-QVT 271
+ H + +G+ G L F W L + G + L
Sbjct: 3215 GIRHSALSNHLCWMQQAYGLGVGDRVLQFTTFSFDVFVEELFWPLMS--GARVVLAGPED 3272
Query: 272 AKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMS 331
+ + + + E+ + + G A P + +
Sbjct: 3273 WRDPALLVELINSEGVDVLHAYPSMLQAFLEEEDAHRCTSLKRIVCGGEALPADLQQQVF 3332
Query: 332 QKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRT 391
L YGP+ W E + + + + LD +
Sbjct: 3333 AGL-------PLYNLYGPTEATITVTHWQ-CVEEGKDAVPIGRPIANRACYILDG----S 3380
Query: 392 QQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETF-------ANGWYHTGDLGVKHPDN 444
+PVP +GE+ + G + +GY P E F Y TGDL D
Sbjct: 3381 LEPVPVG--ALGELYLGGEGLARGYHNRPGLTAERFVPDPFVPGERLYRTGDLARYRADG 3438
Query: 445 YIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPE 504
IE R + G I E+E + HP V EA V+A G A+V
Sbjct: 3439 VIEYIGRVDHQVKIRGFRIELGEIEARLLEHPWVREAVVLAVD----GRQLVAYV----- 3489
Query: 505 VDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVL 552
V + L E + +A +P Y VP ++F +P T GK+ + L
Sbjct: 3490 VPEDEAGDLREALKAHLKASLPEYMVPAHLLFLERMPLTPNGKLDRKAL 3538
|
Length = 5163 |
| >gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 5e-15
Identities = 49/157 (31%), Positives = 64/157 (40%), Gaps = 14/157 (8%)
Query: 403 GEIVMSGNVVMKGYLKNPKANEETFANG-----WYHTGDLGVKHPDNYIEIKDRSKDIII 457
GE+ + G V GY +P+ E F Y TGDLG PD IE R D +
Sbjct: 327 GELYIGGVGVALGYWGDPELTAERFITHRTGERLYRTGDLGRYRPDGTIEFLGR-ADHQV 385
Query: 458 S-GGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAED 516
G + E+E + HP V A VV D ++ AFV V + A
Sbjct: 386 KIRGYRVELGEIEAALARHPGVQRAVVVVVGDGG-AKALAAFV-----VAEDGAAVDAAV 439
Query: 517 IMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVL 552
+ +PAY VP V LP TA GK+ + L
Sbjct: 440 LRAALAELLPAYMVPSRFVVLDALPLTANGKVDRKAL 476
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476 |
| >gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 76.4 bits (189), Expect = 1e-14
Identities = 65/221 (29%), Positives = 89/221 (40%), Gaps = 46/221 (20%)
Query: 25 FLDRAATVHPTRTSVV--HGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPA 82
LDR A +P R ++V R+T+ + + LA L I G V I APN+P
Sbjct: 21 LLDRTAARYPDREALVYRDQGLRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPE 80
Query: 83 IYEAHFGVPMAGAVLNAVNI----RLNAPTIAFLLGHS-ASAVIMVDQ----EYFKLAEE 133
F GA+L V I RL+ + + L S A+I D +Y + E
Sbjct: 81 WVLTQFATAKIGAIL--VTINPAYRLS--ELEYALNQSGCKALIAADGFKDSDYVAMLYE 136
Query: 134 ALKIMEEKSNGRFKPPLL------IVIGDESCDPKDLKY----ALGRGAVEYEKF----- 178
+ G+ + L I +GDE P L + ALGR AV+ +
Sbjct: 137 LAPELATCEPGQLQSARLPELRRVIFLGDEKH-PGMLNFDELLALGR-AVDDAELAARQA 194
Query: 179 -LQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHR 218
L DP I + YTSGTT PKG L+HR
Sbjct: 195 TLDPDDP-------------INIQYTSGTTGFPKGATLTHR 222
|
Length = 559 |
| >gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 3e-14
Identities = 48/147 (32%), Positives = 73/147 (49%), Gaps = 20/147 (13%)
Query: 337 VTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLE-KLDVIDTRTQQPV 395
V YGL+ET GP+T+ P E M G + E +L+ + P+
Sbjct: 411 VVQGYGLTETLGPTTLG--------FPDEMC--MLGTVGAPAVYNELRLEEVPEMGYDPL 460
Query: 396 ---PADGKTIGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRS 452
P GEI + G + GY KNP+ EE +GW+HTGD+G P+ ++I DR
Sbjct: 461 GEPPR-----GEICVRGKCLFSGYYKNPELTEEVMKDGWFHTGDIGEILPNGVLKIIDRK 515
Query: 453 KDII-ISGGENISSVEVENMMYLHPAV 478
K++I +S GE ++ +EN+ +P V
Sbjct: 516 KNLIKLSQGEYVALEYLENVYGQNPIV 542
|
Length = 660 |
| >gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 1e-13
Identities = 80/345 (23%), Positives = 131/345 (37%), Gaps = 63/345 (18%)
Query: 171 GAVEYEKFLQ---TGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLS- 226
G L+ P D A+ +TSG+T +PKGVV +H M +
Sbjct: 150 GGTTLATLLRDGAAAPFPMADLAPDDM---AAILFTSGSTGTPKGVVYTHG----MFEAQ 202
Query: 227 VALI---WGMNEGAVYLWTLPMFHCNGWCYTWSL--AALCGTSI-------CLRQVTAKA 274
+ + +G+ G + L T P+F +L AL TS+ V
Sbjct: 203 IEALREDYGIEPGEIDLPTFPLF---------ALFGPALGMTSVIPDMDPTRPATVDPAK 253
Query: 275 VYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQ-- 332
+++AI +YGVT+ +P +L + E + LP + V +AGA P +V+
Sbjct: 254 LFAAIERYGVTNLFGSPALLERLGRY-GEANGIKLPSLRRVISAGAPVPIAVIERFRAML 312
Query: 333 -KGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQG-------------VRF 378
+ YG +E S++ E + T+A G VR
Sbjct: 313 PPDAEILTPYGATEALPISSI-----ESREILFATRAA--TDNGAGICVGRPVDGVEVRI 365
Query: 379 IGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANE-----ETFANGWYH 433
I + I A G+ IGEIV++G +V + Y P+A + + W+
Sbjct: 366 IAISD-APIPEWDDALRLATGE-IGEIVVAGPMVTRSYYNRPEATRLAKIPDGQGDVWHR 423
Query: 434 TGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAV 478
GDLG + R + + G + ++ E + HP V
Sbjct: 424 MGDLGYLDAQGRLWFCGRKAHRVETAGGTLYTIPCERIFNTHPGV 468
|
Length = 552 |
| >gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 1e-13
Identities = 124/532 (23%), Positives = 191/532 (35%), Gaps = 98/532 (18%)
Query: 6 GIDDLPKNAANYMALTPLWFLDRAATVHPT-----RTSVVHGST-RYTWL---QTYQRCR 56
G+ DLP + +P F A +P R V Y WL + Y
Sbjct: 34 GLLDLPADI-----DSPWQFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAI 88
Query: 57 RLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHS 116
R+ SA+ R + G I N P A G + L A + F++ H+
Sbjct: 89 RIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDTLGANAVEFIINHA 148
Query: 117 ASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYE 176
++ V + L K + K ++ GD S + K+ LG +E
Sbjct: 149 EVSIAFVQESKISSILSCLP----KCSSNLKT--IVSFGDVSSEQKEEAEELGVSCFSWE 202
Query: 177 KFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMN-- 234
+F G + PP+ + + YTSGTT PKGV+L++R LS + +
Sbjct: 203 EFSLMGSLDCEL-PPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDR 261
Query: 235 ---EGAVYLWTLPMFHCNGWCYTWSLAALC---GTSICLRQVTAKAVYSAIAKYGVTHFC 288
E Y LP+ H Y + C G SI Q + + + T FC
Sbjct: 262 VATEEDSYFSYLPLAH----VYDQVIETYCISKGASIGFWQGDIRYLMEDVQALKPTIFC 317
Query: 289 AAPVVLNSIVN-------------------------------------APSEDTIL---- 307
P V + I +P D ++
Sbjct: 318 GVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNLRKGLKQEEASPRLDRLVFDKI 377
Query: 308 --PLPHVVHVNTAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPE 365
L V + +GAAP P + ++ VT LS+ YG + C + S+
Sbjct: 378 KEGLGGRVRLLLSGAAPLPRHV----EEFLRVTSCSVLSQGYGLTESCG--GCFTSIANV 431
Query: 366 TQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKG------YLKN 419
M GV + I+ R + VP G V G + ++G Y K
Sbjct: 432 FS--MVGTVGV------PMTTIEARLES-VPEMGYDALSDVPRGEICLRGNTLFSGYHKR 482
Query: 420 PKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDII-ISGGENISSVEVEN 470
EE +GW+HTGD+G P+ ++I DR K+I +S GE ++ +EN
Sbjct: 483 QDLTEEVLIDGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLEN 534
|
Length = 660 |
| >gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 2e-13
Identities = 54/175 (30%), Positives = 79/175 (45%), Gaps = 18/175 (10%)
Query: 394 PVPADGKTIGEIVMSGNVVMKGYLKNPKANE-----ETFANG--WYHTGDLGVKHPDNYI 446
PV G+ +G + + +GYLKN A E + F G WY TGDL + D
Sbjct: 295 PVGEPGEMLGRVRFKNRELFQGYLKNEDATESKLLRDVFRKGDIWYRTGDLLRQDADGRW 354
Query: 447 EIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASV----VARADERWGESPCAFVTLK 502
DR D EN+S+ EV +++ P+V EA+V V D R G CA +TL+
Sbjct: 355 YFLDRLGDTFRWKSENVSTGEVADVLGAIPSVAEANVYGVKVPGYDGRAG---CAAITLE 411
Query: 503 PE-VDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAK 555
++ + K R ++P+Y VP + + T K QK VLR +
Sbjct: 412 ESSAVETEFTKNLLA--KLARKRLPSYAVPLFLRLTEEVATTGNHKQQKGVLRKE 464
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468 |
| >gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 3e-13
Identities = 127/557 (22%), Positives = 204/557 (36%), Gaps = 107/557 (19%)
Query: 46 YTWLQTYQRCRRLASALCKR-SIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRL 104
T+ + +R ++A AL + G TVA++ N PA G+ G +N +
Sbjct: 4 VTYAEVDKRSNQVARALLAHAGLKPGDTVALLLGNEPAFLWIWLGLAKLGCPTAFLNTNI 63
Query: 105 NAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDL 164
+ ++ + V++ D E + EE L + + +
Sbjct: 64 RSGSLLHCFRCCGARVLVADPELLEAVEEILPALRAMG---------VRV---------- 104
Query: 165 KYALGRGAVE--YEKFLQTGDPQFDWKPPQD-----EWQSIALG-YTSGTTASPKGVVLS 216
+ L + L D D P +S AL YTSGTT PK +S
Sbjct: 105 -FYLSHTSPPEGVISLLAKVDAASDEPVPASLRSGVSIRSTALYIYTSGTTGLPKAARIS 163
Query: 217 HRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAALCGTSICL--------- 267
H L + + G+ V TLP++H S AL G C+
Sbjct: 164 HL-RVLQCSGMLSLCGVTADDVVYTTLPLYH--------SSGALLGIVGCIGLGATLVLK 214
Query: 268 RQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVL 327
+ +A + KY VT F +L + N P D H V + G P V
Sbjct: 215 PKFSASQFWDDCRKYNVTVFQYIGELLRYLCNQPQSDN--DRDHKVRL-AIGNGLRPDVW 271
Query: 328 HAMSQK--GFHVTHTYGLSE------TYGPSTVCAWKPEWDSLPPETQARMKARQGVRFI 379
++ HV TY +E Y V A R +
Sbjct: 272 REFLRRFGPIHVWETYASTEGNIGFINY-TGRVGA----------------VGRASCLYK 314
Query: 380 GLEKLDVI--DTRTQQPV-PADGKTI----GEI-VMSGNVVMK----GYLKNPKANE--- 424
L ++I D +PV A G I GE ++ + + GY + E
Sbjct: 315 LLSPFELIKYDVEKDEPVRDAQGFCIPVGKGEPGLLISKITSQSPFLGYAGPRELTEKKL 374
Query: 425 --ETFANG--WYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLE 480
+ F G +++TGDL V+ N++ DR+ D GEN+++ EV +++ + + E
Sbjct: 375 LRDVFKKGDVYFNTGDLLVQDRQNFLYFHDRTGDTFRWKGENVATTEVADILTMVDFIQE 434
Query: 481 ASV----VARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSI-V 535
+V V + R G A V LKP + E +L + + +F +PAY P+ + +
Sbjct: 435 VNVYGVTVPGHEGRAG---MAAVILKPGTEFDLE-KLYQHVREF----LPAYARPRFLRI 486
Query: 536 FGPLPKTATGKIQKHVL 552
+ T T K QK L
Sbjct: 487 QDSMEVTGTFKQQKVRL 503
|
Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535 |
| >gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 71.9 bits (176), Expect = 4e-13
Identities = 46/128 (35%), Positives = 66/128 (51%), Gaps = 3/128 (2%)
Query: 430 GWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADE 489
G+Y +GD + D Y + R D+I G I + EVE+ + HP EA+VV E
Sbjct: 513 GYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGIEHE 572
Query: 490 RWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQ 548
G+ AFVTL V S E L + ++ R ++ A+ P I + P LPKT +GKI
Sbjct: 573 VKGQGIYAFVTLVEGVPYSEE--LRKSLILTVRNQIGAFAAPDKIHWAPGLPKTRSGKIM 630
Query: 549 KHVLRAKA 556
+ +LR A
Sbjct: 631 RRILRKIA 638
|
Length = 666 |
| >gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 6e-12
Identities = 56/210 (26%), Positives = 96/210 (45%), Gaps = 44/210 (20%)
Query: 319 GAAP-PPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARM--KARQG 375
GAAP PP+++ + G + YG++E + ST+ + P + + K G
Sbjct: 283 GAAPMPPALIAWYRKLGLPICEGYGMTENFAYSTL--------NYPGDRRIGTVGKPIPG 334
Query: 376 VRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETF-ANGWYHT 434
V +L + + GEI++ +M GY K+P+ E F +GW HT
Sbjct: 335 V------ELKISED-------------GEILIRSPGLMSGYYKDPEKTAEAFTEDGWLHT 375
Query: 435 GDLGVKHPDNYIEIKDRSKDII-ISGGENISSVEVENMMYLHPAVLEASVVARADERWGE 493
GD G D +++I R K++ S G+ ++ +EN++ +P V + VV +
Sbjct: 376 GDKGEIDEDGFLKITGRVKELFKTSKGKYVAPAPIENLLSANPHVEQVCVVGSGLPQ--- 432
Query: 494 SPCAFVTL--------KPEVDKSNEQQLAE 515
P A V L + EV++S +Q LA+
Sbjct: 433 -PVALVVLSEAADPLEREEVEESLQQTLAK 461
|
The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504 |
| >gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 8e-12
Identities = 62/207 (29%), Positives = 92/207 (44%), Gaps = 29/207 (14%)
Query: 46 YTWLQTYQRCRRLASALCKRSIGL--GCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIR 103
YTW Q + RR+A+AL +S+GL G +AI++ N A + MAG V +
Sbjct: 7 YTWAQVADQARRIAAAL--QSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHVSVPLYPT 64
Query: 104 LNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPP-LLIVIGDESCDPK 162
L A TI ++L HS + + V KL + M+ P L +I K
Sbjct: 65 LTAETIRYVLEHSDAKALFVG----KL--DDWDAMKA-----GVPEGLPTIILFPYSTLK 113
Query: 163 DLKYALGRGAVEYEKFLQTGDP-QFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAY 221
D +++ L +P Q P ++ +I YTSGTT PKGV+LS GA+
Sbjct: 114 D--------HYKWDDLLAATEPLQGRPLPEPEDLATIV--YTSGTTGQPKGVMLSF-GAF 162
Query: 222 LMSLSVAL-IWGMNEGAVYLWTLPMFH 247
+ + I G+ L LP+ H
Sbjct: 163 AFAAQGTIEIIGLTPNDRLLSYLPLAH 189
|
The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504 |
| >gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 8e-12
Identities = 91/383 (23%), Positives = 136/383 (35%), Gaps = 103/383 (26%)
Query: 203 TSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAALCG 262
TSGTT +PKG +L+ A L + + A + +L LP H + G
Sbjct: 43 TSGTTGTPKGAMLT--AAALTASADATHDRLGGPGQWLLALPAHH------------IAG 88
Query: 263 TSICLRQVTAKAVYSAI---AKYGVTHFCAA--------------PVVLNSIVNAPSEDT 305
+ +R V A + + A + T A P+ L ++ P+
Sbjct: 89 LQVLVRSVIAGSEPVELDVSAGFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPAATA 148
Query: 306 ILPLPHVVHVNTAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPE 365
L V V G P VL A + G +V TYG+SET G
Sbjct: 149 ALAELDAVLV--GGGPAPAPVLDAAAAAGINVVRTYGMSETSG----------------- 189
Query: 366 TQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTI----GEIVMSGNVVMKGYLKNPK 421
G + G VP DG + G I + G + KGY +NP
Sbjct: 190 ---------GCVYDG--------------VPLDGVRVRVEDGRIALGGPTLAKGY-RNP- 224
Query: 422 ANEETFAN-GWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLE 480
+ + FA GW+ T DLG D + + R+ D I +GG + VE + HPAV +
Sbjct: 225 VDPDPFAEPGWFRTDDLGALD-DGVLTVLGRADDAISTGGLTVLPQVVEAALATHPAVAD 283
Query: 481 ASVVARADERWGE--------SPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPK 532
+V D+R G+ TL E + + P+
Sbjct: 284 CAVFGLPDDRLGQRVVAAVVGDGGPAPTL-------------EALRAHVARTLDRTAAPR 330
Query: 533 SI-VFGPLPKTATGKIQKHVLRA 554
+ V LP+ GK+ + L
Sbjct: 331 ELHVVDELPRRGIGKVDRRALVR 353
|
Length = 358 |
| >gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 9e-12
Identities = 64/194 (32%), Positives = 93/194 (47%), Gaps = 45/194 (23%)
Query: 403 GEIVMSGNVVMKGYLKNPKANEETFA---NG--WYHTGDLGVKHPDNYIEIKDRSKDII- 456
GEIV+ G V GY KN + +E + G W++TGD+G HPD +EI DR KDI+
Sbjct: 503 GEIVIGGPSVTLGYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVK 562
Query: 457 ISGGENIS--SVE--------VENMMYLHPAVLEASVVA------RADERW----GESPC 496
+ GE +S VE V+N+M +H + VA +A E+W G
Sbjct: 563 LQHGEYVSLGKVEAALSVSPYVDNIM-VHADPFHSYCVALVVPSQQALEKWAKKAGIDYS 621
Query: 497 AFVTL--KPEVDKSNEQQLAED-----IMKF-CRAK---MPAYWVPKS-IVFGPLPKTAT 544
F L K E K +Q L++ + KF AK +P W P+S +V TA
Sbjct: 622 NFAELCEKEEAVKEVQQSLSKAAKAARLEKFEIPAKIKLLPEPWTPESGLV------TAA 675
Query: 545 GKIQKHVLRAKAKE 558
K+++ +R K K+
Sbjct: 676 LKLKREQIRKKFKD 689
|
Length = 696 |
| >gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 3e-11
Identities = 42/141 (29%), Positives = 63/141 (44%), Gaps = 13/141 (9%)
Query: 423 NEETFAN------GWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHP 476
N+E F G+Y++GDLG K + Y I RS D I G + +E + HP
Sbjct: 479 NDEKFKQLFSKFPGYYNSGDLGFKDENGYYTIVSRSDDQIKISGNKVQLNTIETSILKHP 538
Query: 477 AVLEASVVARADERWGESPCAFVTLKPEVDKSNEQ----QLAEDIMKFCRAKMPAYWVPK 532
VLE + D P + LK D+SN+ +L +I + + V +
Sbjct: 539 LVLECCSIGIYDPDCYNVPIGLLVLKQ--DQSNQSIDLNKLKNEINNIITQDIESLAVLR 596
Query: 533 SIVFGP-LPKTATGKIQKHVL 552
I+ LPKT TGKI + ++
Sbjct: 597 KIIIVNQLPKTKTGKIPRQII 617
|
Length = 647 |
| >gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 3e-11
Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 15/171 (8%)
Query: 393 QPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRS 452
P+P + +G I + G +M GY ++ ++ + A+GW TGDLG D Y+ I R+
Sbjct: 404 MPLPE--RVVGHICVRGPSLMSGYFRDEESQDVLAADGWLDTGDLGYLL-DGYLYITGRA 460
Query: 453 KDIIISGGENISSVEVENMMYLHPAVLEASVVARA-DERWGESPCAFVTLKPEVDKSNEQ 511
KD+II G NI ++E + P + A + + GE V + D+
Sbjct: 461 KDLIIINGRNIWPQDIEWIAEQEPELRSGDAAAFSIAQENGEKIVLLVQCRIS-DEERRG 519
Query: 512 QLAEDIMKFCRAKMPAYWVPKSIVFGP---LPKTATGKIQKHVLRAKAKEM 559
QL + R+ + V ++ P LP+T++GK+ RAKAK+
Sbjct: 520 QLIHALAALVRS---EFGVEAAVELVPPHSLPRTSSGKLS----RAKAKKR 563
|
Length = 579 |
| >gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 5e-11
Identities = 49/186 (26%), Positives = 86/186 (46%), Gaps = 15/186 (8%)
Query: 383 KLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANGW--------YHT 434
+ +++ T +P + K G +V+ G + G ++ +++ F + Y T
Sbjct: 421 NVKLLNEVTGEPCGPNEK--GVLVIEGPLP-PGCMQTVWGDDDRFVKTYWSLFGRQVYST 477
Query: 435 GDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGES 494
D G++ D Y I R+ D+I G + + E+E + HPAV E +VV D G+
Sbjct: 478 FDWGIRDADGYYFILGRTDDVINVAGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQV 537
Query: 495 PCAFVTLK---PEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVF-GPLPKTATGKIQKH 550
AFV K D+ L ++IM +++ A P + F LPKT +GK+ +
Sbjct: 538 AVAFVVPKDSDSLADREARLALEKEIMALVDSQLGAVARPARVWFVSALPKTRSGKLLRR 597
Query: 551 VLRAKA 556
++A A
Sbjct: 598 AIQAIA 603
|
Length = 629 |
| >gnl|CDD|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 6e-11
Identities = 84/380 (22%), Positives = 128/380 (33%), Gaps = 90/380 (23%)
Query: 200 LGYTSGTTASPKGVVLS------HRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCY 253
L Y+SGTT PK + S AY +L+ + + P+ H
Sbjct: 106 LQYSSGTTGEPKLIRRSWTEIDREIEAYNEALNC------EQDETPIVACPVTH------ 153
Query: 254 TWSLAALCGTSICLRQ------VTAKAVYSAIAKYGVTH---FCAAPVVLNSIVNAPSED 304
S +CG L + +T K A+ T A P++L+ +
Sbjct: 154 --SYGLICGVLAALTRGSKPVIITNKNPKFALNILRNTPQHILYAVPLMLHILGRLLPGT 211
Query: 305 TILPLPHVVHVNTAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSL-P 363
H V T+G P + + + ++ ++ YG SE G ++C L
Sbjct: 212 FQF---HAVM--TSGTPLPEAWFYKLRERTTYMMQQYGCSEA-GCVSICPDMKSHLDLGN 265
Query: 364 PETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKAN 423
P + A P EIV+ K
Sbjct: 266 PLPHVSVSAGSD---------------ENAP--------EEIVV-------------KMG 289
Query: 424 EETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASV 483
++ T DLG K + R D+I G N+ +EVE++M P V EA V
Sbjct: 290 DKEI-----FTKDLGYKSERGTLHFMGRMDDVINVSGLNVYPIEVEDVMLRLPGVQEAVV 344
Query: 484 VARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKT 542
D GE A V E+D + ++C + Y VP I +PK
Sbjct: 345 YRGKDPVAGERVKAKVISHEEID-------PVQLREWCIQHLAPYQVPHEIESVTEIPKN 397
Query: 543 ATGKIQKHVLRAKAKEMGPV 562
A GK+ + K E+G V
Sbjct: 398 ANGKVSR-----KLLELGEV 412
|
Length = 414 |
| >gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 7e-11
Identities = 64/224 (28%), Positives = 90/224 (40%), Gaps = 31/224 (13%)
Query: 336 HVTHTYGLSETYGPSTVCAWKPE----WDSLPPETQARMKARQGVRFIGLEKLD---VID 388
+ +TYG +E T E + LP IG K D +I
Sbjct: 288 TIYNTYGPTEATVAVTSIEITDEMLDQYKRLP---------------IGYAKPDSPLLII 332
Query: 389 TRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETF--ANGW--YHTGDLGVKHPDN 444
+P + GEIV+SG V KGYL NP+ E F +G YHTGD G D
Sbjct: 333 DEEGTKLPDGEQ--GEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYL-EDG 389
Query: 445 YIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPE 504
+ + R I G I E+E + V A VV + + A+V K E
Sbjct: 390 LLFYQGRIDFQIKLNGYRIELEEIEQNLRQSSYVESAVVVPYNKDHKVQYLIAYVVPK-E 448
Query: 505 VDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVF-GPLPKTATGKI 547
D E +L + I K + ++ Y +P+ ++ LP T GKI
Sbjct: 449 EDFEREFELTKAIKKELKERLMEYMIPRKFIYRDSLPLTPNGKI 492
|
Length = 503 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 1e-10
Identities = 97/387 (25%), Positives = 139/387 (35%), Gaps = 53/387 (13%)
Query: 202 YTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEG----AVYLWTLPM---FHCNGWCYT 254
YTSG+T PKG H +L L E A + F + W
Sbjct: 1725 YTSGSTGRPKGAGNRHG-----ALVNRLCA-TQEAYQLSAADVVLQFTSFAFDVSVWELF 1778
Query: 255 WSLAALCGTSICLRQVTA----KAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDT-ILPL 309
W L + G + + A + + I + VT P +L ++ + L L
Sbjct: 1779 WPL--INGARLVIAPPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQMDEQVEHPLSL 1836
Query: 310 PHVVHVNTAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPS----TVCAWKPEWDSLPPE 365
VV G A L + GL YGP+ V W E
Sbjct: 1837 RRVV---CGGEALEVEAL----RPWLERLPDTGLFNLYGPTETAVDVTHWT--CRRKDLE 1887
Query: 366 TQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEE 425
+ + Q + + LD + PVP GE+ + G + +GYL P E
Sbjct: 1888 GRDSVPIGQPIANLSTYILD----ASLNPVPI--GVAGELYLGGVGLARGYLNRPALTAE 1941
Query: 426 TF-ANGW-------YHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPA 477
F A+ + Y TGDL D IE R + G I E+E +
Sbjct: 1942 RFVADPFGTVGSRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLREQGG 2001
Query: 478 VLEASVVARADERWGESPCAF-VTLKPE-VDKSNEQQLAEDIMK-FCRAKMPAYWVPKSI 534
V EA V+A+ D G+ A+ V P VD Q I+K +A +P Y VP +
Sbjct: 2002 VREAVVIAQ-DGANGKQLVAYVVPTDPGLVDDDEAQVALRAILKNHLKASLPEYMVPAHL 2060
Query: 535 VF-GPLPKTATGKIQKHVL-RAKAKEM 559
VF +P T GK+ + L A E+
Sbjct: 2061 VFLARMPLTPNGKLDRKALPAPDASEL 2087
|
Length = 3956 |
| >gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 1e-10
Identities = 55/236 (23%), Positives = 89/236 (37%), Gaps = 51/236 (21%)
Query: 27 DRAATVHPTRTSV-----VHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIP 81
RAA P T+ + +R R +A+ L G V ++AP
Sbjct: 1 ARAAA-QPDARYTFLFDDDDEEETLTYAELDRRARAIAARLQALG-APGDRVLLLAPPGL 58
Query: 82 AIYEAHFGVPMAGAVLNAV------NIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEAL 135
A FG AGA+ AV + + +A +L + + ++ AL
Sbjct: 59 DFVAAFFGCLYAGAI--AVPAPPPRRLGRHLARLAAILADAGARAVLTTSAVLAALRAAL 116
Query: 136 KIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEW 195
LL++I + A A DW+PP +
Sbjct: 117 --------AAPAALLLLLIAADD-------LAALAAA--------------DWRPPPPDP 147
Query: 196 QSIA-LGYTSGTTASPKGVVLSHRGAYLMSLSVALI--WGMNEGAV-YLWTLPMFH 247
IA L YTSG+T +PKGV+++H L++ A+ +G++ V W LP++H
Sbjct: 148 DDIAFLQYTSGSTGAPKGVMVTHGN--LLANLRAIARAFGLDPDDVGVSW-LPLYH 200
|
FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547 |
| >gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 1e-10
Identities = 42/187 (22%), Positives = 69/187 (36%), Gaps = 36/187 (19%)
Query: 34 PTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMA 93
P T+V+ G+ T+ + +R +A+AL + G VA++ P A G+ +A
Sbjct: 1 PDATAVIDGAGTLTYGELARRANAIAAALRAAGVAPGDLVAVVMPKGWEQIVAVLGILLA 60
Query: 94 GAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIV 153
GA ++ A A +L A A ++ EEA ++ +
Sbjct: 61 GAAYVPIDPDQPAERRAAIL-ARAGARAVLTDPGLAQPEEAPDLLVVADDAAAAESPAPP 119
Query: 154 IGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGV 213
DP DL Y + +TSG+T PKGV
Sbjct: 120 PPRV--DPDDLAYVI---------------------------------FTSGSTGEPKGV 144
Query: 214 VLSHRGA 220
+++HR A
Sbjct: 145 MITHRAA 151
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 4e-10
Identities = 100/373 (26%), Positives = 146/373 (39%), Gaps = 35/373 (9%)
Query: 200 LGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAA 259
L YTSG+T PKGVV+SH + +V +GM L + N + L
Sbjct: 2338 LIYTSGSTGKPKGVVVSHGEIAMHCQAVIERFGMRADDC---ELHFYSINFDAASERLLV 2394
Query: 260 --LCGTSICLR---QVTAKAVYSAIAKYGVTHFCAAPVVLNSIVN-APSEDTILPLPHVV 313
LCG + LR Q A+ + I + V+ P + + + LP+ +
Sbjct: 2395 PLLCGARVVLRAQGQWGAEEICQLIREQQVSILGFTPSYGSQLAQWLAGQGEQLPVRMCI 2454
Query: 314 HVNTAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPS-TVCAWKPEWDSLPPETQARMKA 372
T G A L + Q F + YGP+ TV L PE A
Sbjct: 2455 ---TGGEALTGEHLQRIRQ-AFAPQLFF---NAYGPTETVVM---PLACLAPEQLEEGAA 2504
Query: 373 RQGV-RFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETF---- 427
+ R +G ++D VP GE+ + G + +GY P E F
Sbjct: 2505 SVPIGRVVGARVAYILDADLA-LVPQGA--TGELYVGGAGLAQGYHDRPGLTAERFVADP 2561
Query: 428 --ANG--WYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASV 483
A+G Y TGDL D +E R + G I E+E+ + HPAV EA V
Sbjct: 2562 FAADGGRLYRTGDLVRLRADGLVEYVGRIDHQVKIRGFRIELGEIESRLLEHPAVREAVV 2621
Query: 484 VARADERWGESPCAF-VTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKS-IVFGPLPK 541
+A D G+ + V+ D + L E + + ++P Y VP I+ LP
Sbjct: 2622 LA-LDTPSGKQLAGYLVSAVAGQDDEAQAALREALKAHLKQQLPDYMVPAHLILLDSLPL 2680
Query: 542 TATGKIQKHVLRA 554
TA GK+ + L A
Sbjct: 2681 TANGKLDRRALPA 2693
|
Length = 4334 |
| >gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 1e-09
Identities = 73/280 (26%), Positives = 119/280 (42%), Gaps = 26/280 (9%)
Query: 202 YTSGTTASPKGVVLSHRGAYLMSLSVALI--WGMNEGAVYLWTLPMFHCNGWCYTWSLAA 259
+TSGT PKGV L+H A L++ A + + E V + LP FH G+
Sbjct: 190 FTSGTEKLPKGVPLTH--ANLLANQRACLKFFSPKEDDVMMSFLPPFHAYGFNSCTLFPL 247
Query: 260 LCGTSICL--RQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAP--SEDTILPLPHVVHV 315
L G + + K + I + VT + PV + I+ E + L VV
Sbjct: 248 LSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQESCLPSLRFVV-- 305
Query: 316 NTAGAAPPPSVLHAMSQKGF-HVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQ 374
G A S L+ + K F H+ L + YG +T C+ P ++ + ++
Sbjct: 306 -IGGDAFKDS-LYQEALKTFPHIQ----LRQGYG-TTECS--PVI-TINTVNSPKHESCV 355
Query: 375 GVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANG--WY 432
G+ G++ L ++ T+ PV + G+T G ++ G + GYL G WY
Sbjct: 356 GMPIRGMDVL-IVSEETKVPVSS-GET-GLVLTRGTSLFSGYLGEDFGQGFVELGGETWY 412
Query: 433 HTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMM 472
TGDLG + +K R + G E +S +E+++
Sbjct: 413 VTGDLGYVDRHGELFLKGRLSRFVKIGAEMVSLEALESIL 452
|
Length = 539 |
| >gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Score = 60.3 bits (146), Expect = 2e-09
Identities = 109/547 (19%), Positives = 189/547 (34%), Gaps = 81/547 (14%)
Query: 41 HGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAV 100
H TW + ++ LA+AL + G V+ PNIP A GA+ ++
Sbjct: 110 HEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLATASVGAIWSSC 169
Query: 101 NIRLNAPTIAFLLGHSASAVIMVDQEYF---KLAEEALKIME-EKSNGRFKPPLLI--VI 154
+ A + ++ Y K + K+ E K + + I +
Sbjct: 170 SPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHIPYLG 229
Query: 155 GDESCDPKDLKYALGRGAVEYEKFL---QTGDPQFDWKPPQDEWQSIALGYTSGTTASPK 211
E+ PK GA++ E F Q + F+ P + + ++SGTT PK
Sbjct: 230 PRETEAPKI------DGALDLEDFTAAAQAAELVFEQLPFD---HPLWILFSSGTTGLPK 280
Query: 212 GVVLSHRGAYLMSL-SVALIWGMNEGAVYLWTLPMFHCNGW-CYTWSLAALC-GTSICLR 268
+V S G + L L + G + + GW + W ++ L G ++ L
Sbjct: 281 CIVHSAGGTLVQHLKEHGLHCDLGPGDRLFY----YTTTGWMMWNWLVSGLATGATLVLY 336
Query: 269 Q-----VTAKAVYSAIAKYGVTHFCAAPVVLNSIVNA---PSEDTILPLPHVVHVNTAGA 320
++ + G T F + + + A P+ L + +
Sbjct: 337 DGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGVHPARTHDL---SALQCVASTG 393
Query: 321 APPPSVLHAMSQKGFHVTH-----TYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQG 375
+P + GF + L+ G + +C+ + P ++A
Sbjct: 394 SP-------LPPDGFRWVYDEIKADVWLASISGGTDICSCFAGANPTLPVHIGEIQAPG- 445
Query: 376 VRFIGLEKLDVIDTRTQQPVPADGKTI----GEIV----MSGNVVMKGYLKNP------K 421
+G + D +GK + GE+V M + + +P
Sbjct: 446 ---LGTA-VQSWDP--------EGKPVTGEVGELVCTNPMPSMPIR--FWNDPDGSKYRD 491
Query: 422 ANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEA 481
A +T+ W H GD P I I RS + G + S E+ N + V E+
Sbjct: 492 AYFDTYPGVWRH-GDWITLTPRGGIVIHGRSDSTLNPQGVRMGSAEIYNAVERLDEVRES 550
Query: 482 SVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LP 540
+ + G FV L P + + L + I + RA + VP I+ P +P
Sbjct: 551 LCIGQEQPDGGYRVVLFVHLAPGA--TLDDALLDRIKRTIRAGLSPRHVPDEIIEVPGIP 608
Query: 541 KTATGKI 547
T TGK
Sbjct: 609 HTLTGKR 615
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway [Central intermediary metabolism, Other]. Length = 652 |
| >gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 3e-09
Identities = 25/81 (30%), Positives = 39/81 (48%)
Query: 44 TRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIR 103
TW + +R RRLA+ L + G VAI+A N P A + AGAV +
Sbjct: 4 QTITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVPVPIYPT 63
Query: 104 LNAPTIAFLLGHSASAVIMVD 124
+ +A++L S + V+ V+
Sbjct: 64 SSPEEVAYILNDSGARVVFVE 84
|
This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 3e-09
Identities = 52/179 (29%), Positives = 89/179 (49%), Gaps = 17/179 (9%)
Query: 386 VIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFAN----GWYHTGDLGVKH 441
++D ++ + V D + +GEI SG + GY +NP+A+ +TF W TGDLG
Sbjct: 383 IVDPQSLE-VLGDNR-VGEIWASGPSIAHGYWRNPEASAKTFVEHDGRTWLRTGDLGFLR 440
Query: 442 PDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVL-EASVVARADERWGESPCAFVT 500
D + + R KD++I G N+ ++E + V+ + V A A GE +
Sbjct: 441 -DGELFVTGRLKDMLIVRGHNLYPQDIEKTVEREVEVVRKGRVAAFAVNHQGEEG---IG 496
Query: 501 LKPEVDKSNEQQL-AEDIMKFCR-AKMPAYW-VPKSIVF---GPLPKTATGKIQKHVLR 553
+ E+ +S ++ L + ++K R A A P ++ G LPKT++GK+Q+ R
Sbjct: 497 IAAEISRSVQKILPPQALIKSIRQAVAEACQEAPSVVLLLNPGALPKTSSGKLQRSACR 555
|
Length = 4334 |
| >gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS) | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 5e-09
Identities = 47/178 (26%), Positives = 74/178 (41%), Gaps = 22/178 (12%)
Query: 47 TWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNA 106
T+ Q Y+ CR+ A A K + +V I+ N P + A G AG + + +
Sbjct: 10 TYKQYYEACRQAAKAFLKLGLERFHSVGILGFNSPEWFIAAVGAIFAGGIAVGIYTTNSP 69
Query: 107 PTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKY 166
++ S + +++VD A++ KI+ + + I+ E K+
Sbjct: 70 EACQYVAETSEANILVVDN-----AKQLQKILAIQ--DQLPHLKAIIQYREPLKEKEPNL 122
Query: 167 -------ALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSH 217
LGR + E+ + Q KP Q L YTSGTT PKGV+LSH
Sbjct: 123 YSWKEFMELGRSIPD-EQLDAIIESQ---KPNQ----CCTLIYTSGTTGMPKGVMLSH 172
|
This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594 |
| >gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 5e-09
Identities = 90/390 (23%), Positives = 147/390 (37%), Gaps = 72/390 (18%)
Query: 202 YTSGTTASPKGVVLSHRGAYLMSLSVALIW-----GMNEGAVYLWTLPM-FHCNGWCYTW 255
+TSG+T PKGV++ ++ L+W + V L P F + W + W
Sbjct: 605 FTSGSTGRPKGVMVGQT-----AIVNRLLWMQNHYPLTADDVVLQKTPCSFDVSVWEFFW 659
Query: 256 SLAALCGTSICLRQVTAK--------AVYSAIAKYGVT--HFCAAPVVLNSIVNAP-SED 304
+ G L V A+ A+ A+YGVT HF P +L + V + E
Sbjct: 660 PF--IAGA--KL--VMAEPEAHRDPLAMQQFFAEYGVTTTHF--VPSMLAAFVASLTPEG 711
Query: 305 TILPLPHVVHVNTAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPST----VCAWKPEWD 360
+ V +G A P + + + L YGP+ V +
Sbjct: 712 ARQSCASLRQVFCSGEALPADL-----CREWQQLTGAPLHNLYGPTEAAVDVSWY----- 761
Query: 361 SLPPETQARMKARQGVRFIGL----EKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGY 416
P + R IG L ++D R + PVP G++ ++G + +GY
Sbjct: 762 --PAFGEELAAVRGSSVPIGYPVWNTGLRILDARMR-PVPPG--VAGDLYLTGIQLAQGY 816
Query: 417 LKNPKANEETF-ANGW------YHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVE 469
L P F A+ + Y TGD+ D +E RS D + G+ I E++
Sbjct: 817 LGRPDLTASRFIADPFAPGERMYRTGDVARWLDDGAVEYLGRSDDQLKIRGQRIELGEID 876
Query: 470 NMMYLHPAVLEASVVAR----ADERWGESP--CAFVTLKPEVDKSNEQQLAEDIMKFCRA 523
M P V +A A A G++ ++ V +S + R
Sbjct: 877 RAMQALPDVEQAVTHACVINQAAATGGDARQLVGYL-----VSQSGLPLDTSALQAQLRE 931
Query: 524 KMPAYWVPKSIV-FGPLPKTATGKIQKHVL 552
++P + VP ++ LP +A GK+ + L
Sbjct: 932 RLPPHMVPVVLLQLDQLPLSANGKLDRKAL 961
|
Length = 1296 |
| >gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 58.5 bits (141), Expect = 6e-09
Identities = 82/368 (22%), Positives = 143/368 (38%), Gaps = 42/368 (11%)
Query: 202 YTSGTTASPKGVVLSHRGAYLMSLSVALIWG---MNEGAVYLWTLPMFHCNGWCYTWSLA 258
YTSGTT PK + HR A ++ A+ + L + M+ G +
Sbjct: 152 YTSGTTGPPKAAI--HRHADPLTFVDAMCRKALRLTPEDTGLCSARMYFAYGLGNSVWFP 209
Query: 259 ALCGTSICLRQVTAKAVYSAI--AKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVN 316
G S + +AI A++G + P ++++ S D+ L VV
Sbjct: 210 LATGGSAVINSAPVTPEAAAILSARFGPSVLYGVPNFFARVIDSCSPDSFRSLRCVV--- 266
Query: 317 TAGAAPPPSVLHAMSQ--KGFHVTHTYGLSE---TYGPSTVCAWKP-EWDSLPPETQARM 370
+AG A + + + G + G +E T+ + V W+ + P + R+
Sbjct: 267 SAGEALELGLAERLMEFFGGIPILDGIGSTEVGQTFVSNRVDEWRLGTLGRVLPPYEIRV 326
Query: 371 KARQGVRFIGLEKLDVIDTRTQQPVPADGKTI-GEIVMSGNVVMKGYLKNPKANEETFAN 429
A G G + G++ + G + KGY P +
Sbjct: 327 VAPDGT--------------------TAGPGVEGDLWVRGPAIAKGYWNRPDSPVAN--E 364
Query: 430 GWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADE 489
GW T D D ++ + R+ D + GG N+ EVE ++ AV EA+VVA +
Sbjct: 365 GWLDTRDRVCIDSDGWVTYRCRADDTEVIGGVNVDPREVERLIIEDEAVAEAAVVAVRES 424
Query: 490 RWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVP-KSIVFGPLPKTATGKIQ 548
+ AF L + + + D+ + ++ A+ VP + V LP+T GK+
Sbjct: 425 TGASTLQAF--LVATSGATIDGSVMRDLHRGLLNRLSAFKVPHRFAVVDRLPRTPNGKLV 482
Query: 549 KHVLRAKA 556
+ LR ++
Sbjct: 483 RGALRKQS 490
|
Length = 705 |
| >gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 9e-09
Identities = 56/178 (31%), Positives = 77/178 (43%), Gaps = 19/178 (10%)
Query: 387 IDTRTQQPVPA--DGKTIGEIVMSGNVVMKGYLK--NPKANEETFANGWYHTGDLGVKHP 442
I+ R + PVP +G G + + G VM GYL+ NP E A+GWY TGD+
Sbjct: 968 IEYRLE-PVPGIDEG---GRLFVRGPNVMLGYLRAENPGVLEPP-ADGWYDTGDIVTIDE 1022
Query: 443 DNYIEIKDRSKDIIISGGENISSVEVENMMY-LHPAVLEASVVARADERWGESPCAFVTL 501
+ +I IK R+K GE IS VE + L P L A V+ D R GE +T
Sbjct: 1023 EGFITIKGRAKRFAKIAGEMISLAAVEELAAELWPDALHA-AVSIPDARKGER-IILLTT 1080
Query: 502 KPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSI-VFGPLPKTATGKIQKHVLRAKAKE 558
+ ++ A+ A VP I +P TGKI + A+E
Sbjct: 1081 ASDATRAAFLAHAK------AAGASELMVPAEIITIDEIPLLGTGKIDYVAVTKLAEE 1132
|
Length = 1140 |
| >gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 1e-08
Identities = 44/156 (28%), Positives = 72/156 (46%), Gaps = 22/156 (14%)
Query: 403 GEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISG-GE 461
GEI++ G++ M GYL E + W+ TGDLG + Y+ I R K++II+ G
Sbjct: 305 GEILVRGSL-MLGYL-----GEPPATDDWWATGDLGHLDEEGYLYINGRKKNLIITSFGR 358
Query: 462 NISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFC 521
N+S VE+ + PA+ +A V G++ V L ++ QL + +
Sbjct: 359 NVSPEWVESELQQAPAIAQAVVF-------GDAQPFLVALIVPAPNISDDQLEAAV-QQI 410
Query: 522 RAKMPAYWVPKSIVFGPLPK-------TATGKIQKH 550
A++P Y K+ V P TA G+ ++
Sbjct: 411 NAQLPDYARIKTWVRLRQPFSTANGLLTANGRPRRA 446
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448 |
| >gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 3e-08
Identities = 61/233 (26%), Positives = 98/233 (42%), Gaps = 22/233 (9%)
Query: 327 LHAMSQKGFH---VTHTYGLSETYGPSTV----CAWKPEWDSLPPETQARMKARQGVRFI 379
AM+ GF +YGL+E+ TV + + + + AR A G
Sbjct: 293 ATAMAPFGFDAGAAAPSYGLAESTCAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIP 352
Query: 380 GLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGV 439
G+E V + G+ IGEI + G +M GYL + + W+ TGDLG
Sbjct: 353 GME---VRISPGDGAAGVAGREIGEIEIRGASMMSGYLGQAPID----PDDWFPTGDLGY 405
Query: 440 KHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFV 499
D + + R+K++I G NI E+E + V E +VVA P +
Sbjct: 406 -LVDGGLVVCGRAKELITVAGRNIFPTEIERVAAQVRGVREGAVVAVGTGEGSARPGLVI 464
Query: 500 TLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVF---GPLPKTATGKIQK 549
E +E ++++ R VP +VF G LP+T++GK+++
Sbjct: 465 AA--EFRGPDEAGARSEVVQ--RVASECGVVPSDVVFVAPGSLPRTSSGKLRR 513
|
Length = 525 |
| >gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 1e-07
Identities = 52/186 (27%), Positives = 80/186 (43%), Gaps = 17/186 (9%)
Query: 380 GLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGV 439
GLE + V+D Q +P G +G I + G V GYL A+GW TGDLG
Sbjct: 368 GLE-VRVVD-EDGQVLPPRG--VGVIELRGESVTPGYLTMDGFIPAQDADGWLDTGDLGY 423
Query: 440 KHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVA---RADERWGESPC 496
+ + + R KD+II G NI ++E V + VA A E
Sbjct: 424 LTEEGEVVVCGRVKDVIIMAGRNIYPTDIERAAARVEGVRPGNAVAVRLDAGHS-REGFA 482
Query: 497 AFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVF---GPLPKTATGKIQKHVLR 553
V D + +++ + A++ P+++V G +PKT +GK++ R
Sbjct: 483 VAVESNAFEDPAEVRRIRHQVAHEVVAEVGVR--PRNVVVLGPGSIPKTPSGKLR----R 536
Query: 554 AKAKEM 559
A A E+
Sbjct: 537 ANAAEL 542
|
Length = 545 |
| >gnl|CDD|234212 TIGR03443, alpha_am_amid, L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 1e-07
Identities = 54/203 (26%), Positives = 78/203 (38%), Gaps = 59/203 (29%)
Query: 402 IGEIVMSGNVVMKGYLKNPKANEETFANGW-----------------------------Y 432
+GEI + + +GYL P+ N E F N W Y
Sbjct: 621 VGEIYVRAGGLAEGYLGLPELNAEKFVNNWFVDPSHWIDLDKENNKPEREFWLGPRDRLY 680
Query: 433 HTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWG 492
TGDLG PD +E R+ D + G I E++ + HP V E + R D+
Sbjct: 681 RTGDLGRYLPDGNVECCGRADDQVKIRGFRIELGEIDTHLSQHPLVRENVTLVRRDKD-- 738
Query: 493 ESPC------------AFVTLKPEVDK--SNEQ---------QLAEDIMKFCRAKMPAYW 529
E P K EVD S++ +L +DI ++ + K+P+Y
Sbjct: 739 EEPTLVSYIVPQDKSDELEEFKSEVDDEESSDPVVKGLIKYRKLIKDIREYLKKKLPSYA 798
Query: 530 VPKSIVFGPLPK---TATGKIQK 549
+P IV PL K GK+ K
Sbjct: 799 IPTVIV--PLKKLPLNPNGKVDK 819
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. Length = 1389 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 2e-07
Identities = 27/80 (33%), Positives = 41/80 (51%)
Query: 45 RYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRL 104
RYT+ + +R RLA+ L + G VA++ N P A F + GAV +N L
Sbjct: 3 RYTYAELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINTAL 62
Query: 105 NAPTIAFLLGHSASAVIMVD 124
+A +L HS + +I+VD
Sbjct: 63 RGEELAHILDHSGARLIVVD 82
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 2e-07
Identities = 65/271 (23%), Positives = 110/271 (40%), Gaps = 15/271 (5%)
Query: 25 FLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIY 84
+L A P R +++ T+ + + R A+ L +R +G G VA+ PN P +
Sbjct: 38 YLRAWARERPQRPAIIFYGHVITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFH 97
Query: 85 EAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEE-----ALKIME 139
FG+ GAV V+ +++ L + + V++ + + E+ +L+ +
Sbjct: 98 IVFFGILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAETSLRHVI 157
Query: 140 EKSNGRFKPPL-LIVIGDESCDPKDLKYALGRGAVEYEKFLQT-GDPQFDWKPPQDEWQS 197
S P + + D P+ GA++ L+ P P D
Sbjct: 158 VTSLADVLPAEPTLPLPDSLRAPR----LAAAGAIDLLPALRACTAPVPLPPPALDALA- 212
Query: 198 IALGYTSGTTASPKGVVLSHRG-AYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWS 256
AL YT GTT PKG + R Y + + A+ E +V+L LP F G +
Sbjct: 213 -ALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVGGEDSVFLSFLPEFWIAGENFGLL 271
Query: 257 LAALCG-TSICLRQVTAKAVYSAIAKYGVTH 286
G T + L + A A +A+ +Y VT
Sbjct: 272 FPLFSGATLVLLARWDAVAFMAAVERYRVTR 302
|
Length = 567 |
| >gnl|CDD|221971 pfam13193, DUF4009, Domain of unknown function (DUF4009) | Back alignment and domain information |
|---|
Score = 47.4 bits (114), Expect = 2e-07
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 528 YWVPKSIVFGP-LPKTATGKIQKHVLRAKAKEMGPVRKSKL 567
Y VP+ + F LPKT +GKI + +LRA A S L
Sbjct: 1 YAVPREVEFVDELPKTRSGKILRRLLRAIALGEDLGDLSTL 41
|
This is a small domain that is found C terminal to pfam00501. It has a central beta sheet core that is flanked by alpha helices. Length = 43 |
| >gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 3e-07
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 389 TRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIE 447
T QP P GEI + G ++ KGY K+ E +GW HTGD+G+ P ++
Sbjct: 450 TSEDQPYPR-----GEICVRGPIIFKGYYKDEVQTREVIDEDGWLHTGDIGLWLPGGRLK 504
Query: 448 IKDRSKDII-ISGGENISSVEVEN 470
I DR K+I ++ GE I+ ++EN
Sbjct: 505 IIDRKKNIFKLAQGEYIAPEKIEN 528
|
Length = 651 |
| >gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 4e-07
Identities = 57/278 (20%), Positives = 90/278 (32%), Gaps = 83/278 (29%)
Query: 42 GSTR-YTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAV 100
GS R +T+ + + RLAS L +G G V I P I P A L A+
Sbjct: 3 GSVRTWTYSELAREVNRLASGLAALGLGKGDRVGIYMPMI----------PEAVVALLAI 52
Query: 101 NIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKP------PLLIVI 154
++ A + G AV + AE + I + R K P +I+
Sbjct: 53 -AKIGAIAVPIFSGFGPDAVA----TRLQDAEAKVLITADGFLRRGKRVDLKDDPAMII- 106
Query: 155 GDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVV 214
YTSGTT PKG V
Sbjct: 107 -----------------------------------------------YTSGTTGKPKGTV 119
Query: 215 LSHRGAYL-MSLSVALIWGMNEGAVYLWTLPMFHCNGWCY-TWSL--AALCGTSICLRQV 270
+H G + + + + + G LW M GW W + L G +I L +
Sbjct: 120 HTHAGFPVKAAKDIGFCFDLKPGDRLLWITDM----GWMMGPWLVLGGLLLGATIVLYEG 175
Query: 271 T-----AKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSE 303
++ + ++ VTH +P ++ ++
Sbjct: 176 APDYPDPDRLWRIVERHKVTHLGLSPTLIRALRAHGDA 213
|
This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474 |
| >gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS) | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 9e-07
Identities = 65/266 (24%), Positives = 97/266 (36%), Gaps = 66/266 (24%)
Query: 202 YTSGTTASPKGVVLSHRGAYLMSLSVALIWGM--NEGAVYLWTLPMFHC----------- 248
+TSG+T PK V+ +HR +A W E V + LP H
Sbjct: 171 FTSGSTGLPKAVINTHRMLCANQAMIAQCWPFLTEEPPVLVDWLPWNHTFGGNHNFNMVL 230
Query: 249 -NGWCYTWS----LAALCGTSIC-LRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPS 302
NG + L ++ LR+V+ T + P +V+A
Sbjct: 231 YNGGTLYIDDGKPVPGLFEETLRNLREVSP------------TVYFNVPKGFEMLVDALE 278
Query: 303 EDTILP---LPHVVHVNTAGAAPPPSV---LHAMSQK--GFHVTHT--YGLSETYGPSTV 352
D L + + AGAA P V L A++ + G + T G +ET +T
Sbjct: 279 RDAALRRRFFKRLRLLFYAGAALPQDVWDRLQALAVRTTGERIPMTSGLGATETAPTATF 338
Query: 353 CAWKPEWDSLPPETQARMKARQGVRFIGLE-KLDVIDTRTQQPVPADGKTIGEIVMSGNV 411
W P ++ + G+ G E KL VP GK E+ + G
Sbjct: 339 VHW--------PTDRSGVI---GLPAPGTELKL----------VPNGGKL--EVRVKGPN 375
Query: 412 VMKGYLKNPKANEETF-ANGWYHTGD 436
V GY ++P+ E F G+Y GD
Sbjct: 376 VTPGYWRDPELTAEAFDEEGFYRIGD 401
|
Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 2e-06
Identities = 121/560 (21%), Positives = 197/560 (35%), Gaps = 107/560 (19%)
Query: 26 LDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYE 85
L+ A P R ++V + + + + RLA L + +G VAI A P +
Sbjct: 1137 LNEQARQTPERIALVWDGGSLDYAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQLLV 1196
Query: 86 AHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGR 145
+ AG ++ A +A++L S ++ L + L
Sbjct: 1197 GLLAILKAGGAYVPLDPDYPAERLAYMLADSGVELL--------LTQSHL---------- 1238
Query: 146 FKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGY--- 202
+ L A G A+ + P + P L Y
Sbjct: 1239 ---------------LERLPQAEGVSAIALDSLHLDSWPS---QAPGLHLHGDNLAYVIY 1280
Query: 203 TSGTTASPKGVVLSHRGAYLMSLSVALIW-----GMNEGAVYLWTLPM-FHCNGWCYTWS 256
TSG+T PKGV +H +L+ L W +++ V + P+ F + W W
Sbjct: 1281 TSGSTGQPKGVGNTHA-----ALAERLQWMQATYALDDSDVLMQKAPISFDVSVWECFWP 1335
Query: 257 LAALCGTSICLRQVTA--------KAVYSAIAKYGVT--HFCAAPVVLNSIVNAPSEDTI 306
L C R V A + + + +YGVT HF P +L ++ P
Sbjct: 1336 LITGC------RLVLAGPGEHRDPQRIAELVQQYGVTTLHF--VPPLLQLFIDEPLAAAC 1387
Query: 307 LPLPHVVHVNTAGAAPPPS----VLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSL 362
L + + G A P VL + Q H + YG +ET V W
Sbjct: 1388 TSLRRLF---SGGEALPAELRNRVLQRLPQVQLH--NRYGPTET--AINVTHW------- 1433
Query: 363 PPETQARMKARQGV-RFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPK 421
+ QA R + R +G V+D +P GE+ + G + +GYL P
Sbjct: 1434 --QCQAEDGERSPIGRPLGNVLCRVLDAEL-NLLPPG--VAGELCIGGAGLARGYLGRPA 1488
Query: 422 ANEETF--------ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMY 473
E F Y TGD + D +E R + G + E++ +
Sbjct: 1489 LTAERFVPDPLGEDGARLYRTGDRARWNADGALEYLGRLDQQVKLRGFRVEPEEIQARLL 1548
Query: 474 LHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKS 533
P V +A+V+ R G + T + E + AE + A++P Y VP
Sbjct: 1549 AQPGVAQAAVLVREGAA-GAQLVGYYTG----EAGQEAE-AERLKAALAAELPEYMVPAQ 1602
Query: 534 IV-FGPLPKTATGKIQKHVL 552
++ +P +GK+ + L
Sbjct: 1603 LIRLDQMPLGPSGKLDRRAL 1622
|
Length = 4334 |
| >gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS) | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 2e-06
Identities = 48/263 (18%), Positives = 83/263 (31%), Gaps = 26/263 (9%)
Query: 44 TRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIR 103
+W + + RLA+AL + G VA PN+P A GA+ ++ +
Sbjct: 85 REISWAELRSQVARLAAALRDLGVKPGDRVAGYLPNVPEAVIAMLATASIGAIWSSCSPD 144
Query: 104 LNAPTIAFLLGHSASAVIMVDQEY------FKLAEEALKIMEEKSNGRFKPPLLIVIGDE 157
+ G V+ Y E+ +I++ +V+
Sbjct: 145 FGVEAVLDRFGQIEPKVLFAVDGYVYNGKEHDRREKIAEIVK-----GLPSLEAVVVVPY 199
Query: 158 SCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKP-PQDEWQSIALGYTSGTTASPKGVVLS 216
+++ P D I Y+SGTT PK +V
Sbjct: 200 LSSDAQPAALKFSALTLLWSLAGDRAAPLEFERLPFDHPLWIL--YSSGTTGLPKCIVHG 257
Query: 217 HRGAYLMSL-SVALIWGMNEGAVYLWTLPMFHCNGWC-YTWSLAAL-CGTSICLRQ---- 269
G L L L + G + + GW + W ++ L G ++ L
Sbjct: 258 AGGTLLQHLKEHGLHCDLRPGDRLFY----YTTTGWMMWNWLVSGLLSGATLVLYDGSPL 313
Query: 270 -VTAKAVYSAIAKYGVTHFCAAP 291
++ AK G+T F +
Sbjct: 314 YPDPDVLWRLAAKLGITIFGTSA 336
|
AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616 |
| >gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS) | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 4e-06
Identities = 43/213 (20%), Positives = 72/213 (33%), Gaps = 55/213 (25%)
Query: 44 TRYTWL---QTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAV 100
Y W+ + +R + S L + G + I A N P V+ +
Sbjct: 1 GPYEWISYKEVEERALNIGSGLRALGLKPGDKIGIFAENRPEWIITEQACFSQSLVIVPL 60
Query: 101 NIRLNAPTIAFLLGHS-ASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESC 159
L I ++L + S V + + E L+ + +K+ PP
Sbjct: 61 YDTLGEEAIEYILNETEISIVFCDAVKVYSFEE--LEELGKKNKVPPTPP---------- 108
Query: 160 DPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRG 219
P+DL A + YTSGTT +PKGV+L+H
Sbjct: 109 KPEDL-------AT--------------------------IMYTSGTTGNPKGVMLTHGN 135
Query: 220 AYLMSLSVALIWGMNEGA----VYLWTLPMFHC 248
+++ + + E VY+ LP+ H
Sbjct: 136 --IVAGVAGINKIVPEFIGPTDVYISYLPLAHI 166
|
The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539 |
| >gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 5e-06
Identities = 31/95 (32%), Positives = 41/95 (43%), Gaps = 21/95 (22%)
Query: 386 VIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFAN---------------- 429
++D T +P DG+ IGEI + GN + GY P+ TF N
Sbjct: 404 IVDPETASELP-DGQ-IGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPD 461
Query: 430 --GWYHTGDLGVKHPDNYIEIKDRSKDIIISGGEN 462
W TGD GV D + I R KD++I G N
Sbjct: 462 DALWVRTGDYGVYF-DGELYITGRVKDLVIIDGRN 495
|
Length = 631 |
| >gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 7e-06
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 199 ALGYTSGTTASPKGVVLSHRGAYLMSLSVAL--IWGMNEGAVYLWTLPMFHCNG 250
A+ YTSGTT KG +LSH L+S ++ L W V + LP+FH +G
Sbjct: 160 AILYTSGTTGRSKGAMLSHGN--LLSNALTLVDYWRFTPDDVLIHALPIFHTHG 211
|
Length = 504 |
| >gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 7e-06
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 391 TQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIK 449
T P P GEI++ G + KGY K + E +GW+HTGD+G + + I
Sbjct: 501 TDTPEPR-----GEILLRGPFLFKGYYKQEELTREVLDEDGWFHTGDVGSIAANGTLRII 555
Query: 450 DRSK 453
R K
Sbjct: 556 GRVK 559
|
Length = 700 |
| >gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 9e-06
Identities = 51/236 (21%), Positives = 82/236 (34%), Gaps = 47/236 (19%)
Query: 25 FLDR-AATVHPTRTSVV----HGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPN 79
F ++ A + +V R+TW + ++R RR+A L +G G VA++A
Sbjct: 4 FTEKMYANARTSPRGMVTGEPDAPVRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGA 63
Query: 80 IPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIME 139
I G+ M GA L L+ PT + + + ++
Sbjct: 64 PVEIAPTAQGLWMRGASLTM----LHQPT------PRTDLAVWAED-----TLRVIGMIG 108
Query: 140 EKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIA 199
K +V+G+ + G + L P + +A
Sbjct: 109 AK---------AVVVGEPFLAAAPVLEEKGIRVLTVADLLAADPI----DPVETGEDDLA 155
Query: 200 L-GYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGA-------VYLWTLPMFH 247
L TSG+T SPK V ++H Y A M A V + LP+FH
Sbjct: 156 LMQLTSGSTGSPKAVQITHGNLY------ANAEAMFVAAEFDVETDVMVSWLPLFH 205
|
Length = 545 |
| >gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase) | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 2e-05
Identities = 21/83 (25%), Positives = 35/83 (42%)
Query: 45 RYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRL 104
R T+ + RLA+AL + + G VA PN + GAV+N +
Sbjct: 1 RLTYGELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAVINPIVPIY 60
Query: 105 NAPTIAFLLGHSASAVIMVDQEY 127
+ F+L + + V+ V E+
Sbjct: 61 RERELGFILRQARARVLFVPDEF 83
|
Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 2e-05
Identities = 23/86 (26%), Positives = 39/86 (45%)
Query: 36 RTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGA 95
R ++V G T+ + R RLA AL + G VA++AP + + AG
Sbjct: 2 RIALVDGGRSLTYGELDARSGRLAKALLALGLLPGDRVAVLAPKSAEYVVLYLAIWRAGG 61
Query: 96 VLNAVNIRLNAPTIAFLLGHSASAVI 121
V +N A +A++L S +++
Sbjct: 62 VAVPLNPSYPAAELAYILSDSQPSLL 87
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 2e-05
Identities = 58/269 (21%), Positives = 97/269 (36%), Gaps = 60/269 (22%)
Query: 45 RYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVL------- 97
+YT+ + + + A+ L + + G V I P IP +Y A G GA++
Sbjct: 73 KYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALLGALKNGAIVGPLFEAF 132
Query: 98 --NAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPL--LIV 153
AV RL A +I + + L P L +++
Sbjct: 133 MEEAVRDRLE-------DS-EAKVLITTPALLERKPADDL------------PSLKHVLL 172
Query: 154 IGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFD--WKPPQDEWQSIALGYTSGTTASPK 211
+G++ G G +++ ++ +FD W +D L YTSG+T PK
Sbjct: 173 VGEDV--------EEGPGTLDFNALMEQASDEFDIEWTDRED---GAILHYTSGSTGKPK 221
Query: 212 GVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCN---GWCYTWSLAA----LCGTS 264
GV+ H + + ++E VY W C GW S L G +
Sbjct: 222 GVLHVHNAMLQHYQTGKYVLDLHEDDVY-W------CTADPGWVTGTSYGIFAPWLNGAT 274
Query: 265 ICLRQV--TAKAVYSAIAKYGVTHFCAAP 291
+ + + Y + Y VT + AP
Sbjct: 275 NVIDGGRFSPERWYRILEDYKVTVWYTAP 303
|
Length = 570 |
| >gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 35/102 (34%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
Query: 150 LLIVI-GDESCDPKDLKYALGRGAVEYEKFLQTG--DPQFDWKPPQDEWQSIA-LGYTSG 205
L++V+ G + P L G V Y K L G PQ ++PP+ E +A + YTSG
Sbjct: 176 LIVVVGGADEPLPS-LPSGTGVEIVTYSKLLAQGRSSPQ-PFRPPKPE--DVATICYTSG 231
Query: 206 TTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFH 247
TT +PKGVVL+H +L V++ LP+ H
Sbjct: 232 TTGTPKGVVLTHGNLIANVAGSSLSTKFYPSDVHISYLPLAH 273
|
Length = 651 |
| >gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 2e-05
Identities = 30/79 (37%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 188 WKPPQDEWQSIA-LGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMF 246
W PP+ +IA L YTSG+T P GV ++H L V EG + LP F
Sbjct: 172 WVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVSWLPFF 231
Query: 247 HCNGWCYTWSLAALCGTSI 265
H G T L AL G I
Sbjct: 232 HDMG-LITVLLPALLGHYI 249
|
Length = 631 |
| >gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 45/169 (26%), Positives = 75/169 (44%), Gaps = 25/169 (14%)
Query: 399 GKTIGEIVMSGNVVMK--GYLKNPKANE-----ETFANG--WYHTGDLGVKHPDNYIEIK 449
G +G+I+ + + + GY+ N A + F G + +GD+ V Y+ K
Sbjct: 311 GLLVGKII-QNDPLRRFDGYV-NEGATNKKIARDVFKKGDSAFLSGDVLVMDELGYLYFK 368
Query: 450 DRSKDIIISGGENISSVEVE----NMMYLHPAVLEASVVARADERWGESPCAFVTLKPEV 505
DR+ D GEN+S+ EVE N++ L V+ V + R G + K ++
Sbjct: 369 DRTGDTFRWKGENVSTTEVEGILSNVLGLEDVVVYGVEVPGVEGRAGMAAIVDPERKVDL 428
Query: 506 DKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLR 553
D+ + + K +P Y P+ I P + KT T K+QK L+
Sbjct: 429 DR-----FSAVLAK----SLPPYARPQFIRLLPEVDKTGTFKLQKTDLQ 468
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes FATP4, FATP1, and homologous proteins. Each FATP has unique patterns of tissue distribution. FATP4 is mainly expressed in the brain, testis, colon and kidney. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 474 |
| >gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 29/87 (33%), Positives = 37/87 (42%), Gaps = 17/87 (19%)
Query: 388 DTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETF------------ANGWYHTG 435
DT + P G T+GEI + G+ V GY + P+ E TF W TG
Sbjct: 387 DTCIECP---AG-TVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRTG 442
Query: 436 DLGVKHPDNYIEIKDRSKDIIISGGEN 462
DLG I R KD++I G N
Sbjct: 443 DLGFISEGELF-IVGRIKDLLIVDGRN 468
|
Length = 578 |
| >gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 3e-05
Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
Query: 14 AANYMALTPLW--FLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGC 71
AA Y L AA HP RT+VV G R T+ + RLA+ L IG G
Sbjct: 8 AAGYWGDQTLGDLLAANAAR-HPDRTAVVDGPRRLTYRELDAAVDRLAAGLLALGIGPGD 66
Query: 72 TVAIIAPNIPAIYEAHFGVPMAGAVL 97
V + PN+ +F + GA+
Sbjct: 67 RVLVQLPNVAEFVILYFALFKLGAIP 92
|
2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483 |
| >gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 3e-05
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 202 YTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAALC 261
YTSGTT PK V+ H Y ++ +GM V LP++H G A L
Sbjct: 111 YTSGTTGLPKAAVIVHSRYYRIAAGAYYAFGMRPEDVVYDCLPLYHSAGGIMGVGQALLH 170
Query: 262 GTSICLR-QVTAKAVYSAIAKYGVT 285
G+++ +R + +A + KY T
Sbjct: 171 GSTVVIRKKFSASNFWDDCVKYNCT 195
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes FATP4, FATP1, and homologous proteins. Each FATP has unique patterns of tissue distribution. FATP4 is mainly expressed in the brain, testis, colon and kidney. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 474 |
| >gnl|CDD|215552 PLN03051, PLN03051, acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 3e-05
Identities = 112/528 (21%), Positives = 185/528 (35%), Gaps = 71/528 (13%)
Query: 78 PNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKI 137
+ IY + +AG V+ +V +A IA L + A + Q+ AL +
Sbjct: 5 VDAVIIY---LAIVLAGCVVVSVADSFSAKEIATRL-DISGAKGVFTQDVVLRGGRALPL 60
Query: 138 MEE-KSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQF--DWKPPQDE 194
+ K +L G+ P L + + FL Q
Sbjct: 61 YSKVVEAAPAKAIVLPAAGEPVAVP------LREQDLSWCDFLGVAAAQGSVGGNEYSPV 114
Query: 195 WQSI----ALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNG 250
+ + + ++SGTT PK + +H + + G V W + G
Sbjct: 115 YAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAHMDIQPGDVVCWPTNL----G 170
Query: 251 WCY-TWSL--AALCGTSICLRQ--VTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDT 305
W W L A L G ++ L + + GVT P ++ + + +
Sbjct: 171 WMMGPWLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFAM 230
Query: 306 ILP-LPHV-VHVNTAGAAPPPSVLHAMSQKGFH--VTHTYG---LSETYGPSTVCAWKPE 358
+ V +T A+ VL S +G++ V G L+ Y ST+
Sbjct: 231 EGLDWSKLRVFASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTELASGYISSTLL----- 285
Query: 359 WDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGY-- 416
P A A G RF+ L V P P D +GE+ ++ M G
Sbjct: 286 ---QPQAPGAFSTASLGTRFVLLNDNGV-------PYPDDQPCVGEVALA--PPMLGASD 333
Query: 417 -LKNPKANEETFANGW--YHT--------GDLGVKHPDNYIEIKDRSKDIIISGGENISS 465
L N +++ + G Y + GD+ + P Y ++ R+ D + GG SS
Sbjct: 334 RLLN-ADHDKVYYKGMPMYGSKGMPLRRHGDIMKRTPGGYFCVQGRADDTMNLGGIKTSS 392
Query: 466 VEVENMM-YLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFC--- 521
VE+E + E + V A G + E K +Q E + K
Sbjct: 393 VEIERACDRAVAGIAETAAVGVAPPDGGPELLVIFLVLGEEKKGFDQARPEALQKKFQEA 452
Query: 522 --RAKMPAYWVPKSIVFGPLPKTATGKIQKHVLRAKAKEMGPVRKSKL 567
P + V + + LP+ A+ K+ + VLR + K+ R SKL
Sbjct: 453 IQTNLNPLFKVSRVKIVPELPRNASNKLLRRVLRDQLKKELSGR-SKL 499
|
Length = 499 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 4e-05
Identities = 45/162 (27%), Positives = 69/162 (42%), Gaps = 12/162 (7%)
Query: 402 IGEIVMSGNVVMKGYLKNPKANEETF------ANG--WYHTGDLGVKHPDNYIEIKDRSK 453
+GE+ ++G V +GY+ +P F A G Y TGDL + D +E R
Sbjct: 4066 VGELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGERLYRTGDLARRRSDGVLEYVGRID 4125
Query: 454 DIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQL 513
+ G I E+E ++ V EA+V + G+ + L P + L
Sbjct: 4126 HQVKIRGYRIELGEIEARLHEQAEVREAAVAVQEGVN-GKHLVGY--LVPHQTVLAQGAL 4182
Query: 514 AEDIMKFCRAKMPAYWVPKS-IVFGPLPKTATGKIQKHVLRA 554
E I + RA++P Y VP + LP A GK+ + L A
Sbjct: 4183 LERIKQRLRAELPDYMVPLHWLWLDRLPLNANGKLDRKALPA 4224
|
Length = 4334 |
| >gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 7e-05
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Query: 202 YTSGTTASPKGVVLSHR----GAYLMSLSVA-LIWGMNEGAVYLWTLPMFH 247
YTSGTT PKGV+ +H G + + LI E Y LP+ H
Sbjct: 271 YTSGTTGDPKGVMHTHGSLTAGILALEDRLNDLIGPPEEDETYCSYLPLAH 321
|
Length = 700 |
| >gnl|CDD|215553 PLN03052, PLN03052, acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 9e-05
Identities = 35/139 (25%), Positives = 57/139 (41%), Gaps = 10/139 (7%)
Query: 435 GDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMM-YLHPAVLEASVVARADERWG- 492
GD+ + Y R+ D + GG +SSVE+E + +VLE + + G
Sbjct: 594 GDIFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERVCNAADESVLETAAIGVPPPGGGP 653
Query: 493 ESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKM----PAYWVPKSIVFGPLPKTATGKIQ 548
E LK + L E F A P + V ++ P+TA+ K+
Sbjct: 654 EQLVIAAVLKD--PPGSNPDLNELKKIFNSAIQKKLNPLFKVSAVVIVPSFPRTASNKVM 711
Query: 549 KHVLRAKAKEMGPVRKSKL 567
+ VLR + + + +SKL
Sbjct: 712 RRVLRQQLAQE--LSRSKL 728
|
Length = 728 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-04
Identities = 23/87 (26%), Positives = 40/87 (45%)
Query: 45 RYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRL 104
T+ + + RLA L ++ + G VA+ N P A++ + AGAV+ VN
Sbjct: 1 VITYAELLELVDRLAGLLQEKGVRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPMN 60
Query: 105 NAPTIAFLLGHSASAVIMVDQEYFKLA 131
+ +L S + V++V E +A
Sbjct: 61 REAELEHILNDSGARVLIVGSELDDVA 87
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 1e-04
Identities = 33/130 (25%), Positives = 48/130 (36%), Gaps = 36/130 (27%)
Query: 318 AGAAPPPSV---LHAMSQKGFHVTH------TYGLSETYGPSTVCAWKPEWDSLPPETQA 368
AGAA V L +++ G++ET +T P ++A
Sbjct: 342 AGAALSQDVWDRLDRVAEA--TCGERIRMMTGLGMTETAPSATFTTG--------PLSRA 391
Query: 369 RMKARQGVRFIGLE-KLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETF 427
G+ G E KL VP GK E+ + G V GY + P+ E F
Sbjct: 392 GNI---GLPAPGCEVKL----------VPVGGKL--EVRVKGPNVTPGYWRAPELTAEAF 436
Query: 428 -ANGWYHTGD 436
G+Y +GD
Sbjct: 437 DEEGYYRSGD 446
|
Length = 614 |
| >gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 3e-04
Identities = 19/80 (23%), Positives = 32/80 (40%)
Query: 45 RYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRL 104
R ++ + R A AL + G VA++ N P A + GAV +N
Sbjct: 3 RLSYAEFNAWANRYAHALRALGVKKGDVVALLMENRPEYLLAWLALAKLGAVAALINTTQ 62
Query: 105 NAPTIAFLLGHSASAVIMVD 124
+A + S + ++VD
Sbjct: 63 RGEVLAHCINVSDARAVIVD 82
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444 |
| >gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 3e-04
Identities = 44/181 (24%), Positives = 70/181 (38%), Gaps = 29/181 (16%)
Query: 394 PVP--ADGKTIGEIVMSGNVVMKGYLK-------------NPKANEETFANGWYHTGDLG 438
VP G G + + G +M GYL+ N + E GWY TGD+
Sbjct: 546 SVPGIEQG---GRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEMER---GWYDTGDIV 599
Query: 439 VKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAF 498
+++I+ R+K GE +S VE + + + ++D GE+ F
Sbjct: 600 RFDEQGFVQIQGRAKRFAKIAGEMVSLEMVEQLALGVSPDKQHATAIKSDASKGEALVLF 659
Query: 499 VTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSI-VFGPLPKTATGKIQKHVLRAKAK 557
T E+ + QQ A + +P VP+ I LP +GK L++
Sbjct: 660 TT-DSELTREKLQQYAREH------GVPELAVPRDIRYLKQLPLLGSGKPDFVTLKSMVD 712
Query: 558 E 558
E
Sbjct: 713 E 713
|
Length = 718 |
| >gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 4e-04
Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 24/94 (25%)
Query: 388 DTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFAN------------------ 429
DT + P DG +GEI + G+ + +GY P+ E TF
Sbjct: 419 DTGAELP---DG-EVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADD 474
Query: 430 -GWYHTGDLGVKHPDNYIEIKDRSKDIIISGGEN 462
W TGDLGV + D + I R D+I+ G N
Sbjct: 475 GTWLRTGDLGV-YLDGELYITGRIADLIVIDGRN 507
|
Length = 612 |
| >gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 6e-04
Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 4/102 (3%)
Query: 25 FLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIY 84
++ A P +VV G T+ + +R RLA+ L +G V + P +
Sbjct: 4 LVEAQAERTPDAIAVVCGDESLTYAELNRRANRLAARLRAAGVGPESRVGVCLRRSPDLV 63
Query: 85 EAHFGVPMAGAVLNAVNIRLNAPT--IAFLLGHSASAVIMVD 124
A V AGA V + P +A++L + + +++ D
Sbjct: 64 VALLAVLKAGAAY--VPLDPAYPPERLAYILEDAGARLVLTD 103
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449 |
| >gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.001
Identities = 49/208 (23%), Positives = 77/208 (37%), Gaps = 15/208 (7%)
Query: 47 TWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNA 106
T+ + Y+ ++ SAL G V I N P A + + L
Sbjct: 78 TYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGP 137
Query: 107 PTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKY 166
+ +++ H+ + V + K E + KS R K ++ + + D
Sbjct: 138 GAVDYIVDHAEIDFVFVQDKKIKELLEP----DCKSAKRLK--AIVSFTSVTEEESDKAS 191
Query: 167 ALGRGAVEYEKFLQTG--DPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMS 224
+G + FL G +P + PP+ + YTSGT+ PKGVVL+H
Sbjct: 192 QIGVKTYSWIDFLHMGKENPS-ETNPPK-PLDICTIMYTSGTSGDPKGVVLTHEAVATFV 249
Query: 225 LSVALIW-----GMNEGAVYLWTLPMFH 247
V L M VYL LP+ H
Sbjct: 250 RGVDLFMEQFEDKMTHDDVYLSFLPLAH 277
|
Length = 660 |
| >gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.001
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 11/95 (11%)
Query: 199 ALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLA 258
AL YTSGTT PKG +S R + S ++ + +P++H T +
Sbjct: 91 ALIYTSGTTGLPKGCAISWRRTLVTSNPLSHDLNLQFPDRTYTCMPLYHG-----TAAFL 145
Query: 259 ALC-----GTSICL-RQVTAKAVYSAIAKYGVTHF 287
LC G ++CL R+ +A + + T
Sbjct: 146 GLCYCLGSGGTLCLSRKFSASQFWKDVRDSEATII 180
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468 |
| >gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 22/84 (26%), Positives = 34/84 (40%)
Query: 41 HGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAV 100
YT+ Q RLA+AL + + G V + P P AH V GAV +
Sbjct: 2 GTREEYTFGQLKDASNRLANALRELGVERGDRVGVYLPQSPETAIAHLAVYKLGAVSVPL 61
Query: 101 NIRLNAPTIAFLLGHSASAVIMVD 124
++ + L S + V++ D
Sbjct: 62 SVLFGPDAVEHRLRDSGARVLVTD 85
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 567 | |||
| KOG1176 | 537 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| COG0365 | 528 | Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l | 100.0 | |
| KOG1177 | 596 | consensus Long chain fatty acid acyl-CoA ligase [L | 100.0 | |
| COG0318 | 534 | CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l | 100.0 | |
| PTZ00237 | 647 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PLN02479 | 567 | acetate-CoA ligase | 100.0 | |
| PLN03102 | 579 | acyl-activating enzyme; Provisional | 100.0 | |
| COG1021 | 542 | EntE Peptide arylation enzymes [Secondary metaboli | 100.0 | |
| PRK07788 | 549 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN02654 | 666 | acetate-CoA ligase | 100.0 | |
| TIGR02316 | 628 | propion_prpE propionate--CoA ligase. This family c | 100.0 | |
| PLN02860 | 563 | o-succinylbenzoate-CoA ligase | 100.0 | |
| PRK07529 | 632 | AMP-binding domain protein; Validated | 100.0 | |
| PLN02614 | 666 | long-chain acyl-CoA synthetase | 100.0 | |
| PLN02736 | 651 | long-chain acyl-CoA synthetase | 100.0 | |
| PRK13295 | 547 | cyclohexanecarboxylate-CoA ligase; Reviewed | 100.0 | |
| TIGR02188 | 625 | Ac_CoA_lig_AcsA acetate--CoA ligase. This model de | 100.0 | |
| PRK06334 | 539 | long chain fatty acid--[acyl-carrier-protein] liga | 100.0 | |
| PRK00174 | 637 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK13382 | 537 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK08162 | 545 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08314 | 546 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK06839 | 496 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05605 | 573 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK04319 | 570 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK10524 | 629 | prpE propionyl-CoA synthetase; Provisional | 100.0 | |
| PLN03052 | 728 | acetate--CoA ligase; Provisional | 100.0 | |
| PLN02574 | 560 | 4-coumarate--CoA ligase-like | 100.0 | |
| PRK06187 | 521 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07470 | 528 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN02861 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| TIGR01217 | 652 | ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym | 100.0 | |
| PRK05677 | 562 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07656 | 513 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK06155 | 542 | crotonobetaine/carnitine-CoA ligase; Provisional | 100.0 | |
| PRK05857 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN02246 | 537 | 4-coumarate--CoA ligase | 100.0 | |
| PRK03640 | 483 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK07008 | 539 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK03584 | 655 | acetoacetyl-CoA synthetase; Provisional | 100.0 | |
| PRK09274 | 552 | peptide synthase; Provisional | 100.0 | |
| PRK07786 | 542 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07638 | 487 | acyl-CoA synthetase; Validated | 100.0 | |
| PTZ00342 | 746 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK08316 | 523 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06018 | 542 | putative acyl-CoA synthetase; Provisional | 100.0 | |
| PRK07769 | 631 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK12583 | 558 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06087 | 547 | short chain acyl-CoA synthetase; Reviewed | 100.0 | |
| PRK05852 | 534 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05620 | 576 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08315 | 559 | AMP-binding domain protein; Validated | 100.0 | |
| PRK06145 | 497 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06188 | 524 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07867 | 529 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06060 | 705 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN02330 | 546 | 4-coumarate--CoA ligase-like 1 | 100.0 | |
| TIGR02275 | 527 | DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot | 100.0 | |
| TIGR03098 | 515 | ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor | 100.0 | |
| TIGR03208 | 538 | cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. | 100.0 | |
| PLN02387 | 696 | long-chain-fatty-acid-CoA ligase family protein | 100.0 | |
| PLN02430 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PRK07514 | 504 | malonyl-CoA synthase; Validated | 100.0 | |
| PRK12476 | 612 | putative fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK08008 | 517 | caiC putative crotonobetaine/carnitine-CoA ligase; | 100.0 | |
| PRK10946 | 536 | entE enterobactin synthase subunit E; Provisional | 100.0 | |
| PRK12492 | 562 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK06164 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK13388 | 540 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK09088 | 488 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 100.0 | |
| PRK06710 | 563 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08043 | 718 | bifunctional acyl-[acyl carrier protein] synthetas | 100.0 | |
| PRK06178 | 567 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08279 | 600 | long-chain-acyl-CoA synthetase; Validated | 100.0 | |
| TIGR01734 | 502 | D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig | 100.0 | |
| PRK13383 | 516 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK08751 | 560 | putative long-chain fatty acyl CoA ligase; Provisi | 100.0 | |
| KOG1256 | 691 | consensus Long-chain acyl-CoA synthetases (AMP-for | 100.0 | |
| KOG1175 | 626 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| PRK05851 | 525 | long-chain-fatty-acid--[acyl-carrier-protein] liga | 100.0 | |
| PRK07059 | 557 | Long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR03205 | 541 | pimA dicarboxylate--CoA ligase PimA. PimA, a membe | 100.0 | |
| COG1022 | 613 | FAA1 Long-chain acyl-CoA synthetases (AMP-forming) | 100.0 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PTZ00216 | 700 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 100.0 | |
| TIGR02262 | 508 | benz_CoA_lig benzoate-CoA ligase family. Character | 100.0 | |
| PRK07798 | 533 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08180 | 614 | feruloyl-CoA synthase; Reviewed | 100.0 | |
| PRK13390 | 501 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK04813 | 503 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| PRK08974 | 560 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07787 | 471 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PLN03051 | 499 | acyl-activating enzyme; Provisional | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK12406 | 509 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK07445 | 452 | O-succinylbenzoic acid--CoA ligase; Reviewed | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PRK09029 | 458 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK13391 | 511 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12582 | 624 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK08276 | 502 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 100.0 | |
| PRK05850 | 578 | acyl-CoA synthetase; Validated | 100.0 | |
| KOG1180 | 678 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| PRK09192 | 579 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR01923 | 436 | menE O-succinylbenzoate-CoA ligase. This model rep | 100.0 | |
| PRK07768 | 545 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08308 | 414 | acyl-CoA synthetase; Validated | 100.0 | |
| PF00501 | 417 | AMP-binding: AMP-binding enzyme; InterPro: IPR0008 | 100.0 | |
| KOG1179 | 649 | consensus Very long-chain acyl-CoA synthetase/fatt | 100.0 | |
| TIGR01733 | 408 | AA-adenyl-dom amino acid adenylation domain. This | 100.0 | |
| PTZ00297 | 1452 | pantothenate kinase; Provisional | 100.0 | |
| PRK07824 | 358 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| COG1020 | 642 | EntF Non-ribosomal peptide synthetase modules and | 100.0 | |
| TIGR02372 | 386 | 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv | 100.0 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 100.0 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 100.0 | |
| KOG1178 | 1032 | consensus Non-ribosomal peptide synthetase/alpha-a | 100.0 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 99.98 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 99.97 | |
| TIGR03089 | 227 | conserved hypothetical protein TIGR03089. This pro | 99.94 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 99.88 | |
| PRK09188 | 365 | serine/threonine protein kinase; Provisional | 99.86 | |
| TIGR02304 | 430 | aden_form_hyp probable adenylate-forming enzyme. M | 99.79 | |
| PF13193 | 73 | AMP-binding_C: AMP-binding enzyme C-terminal domai | 99.23 | |
| PF04443 | 365 | LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR | 98.93 | |
| PF03321 | 528 | GH3: GH3 auxin-responsive promoter; InterPro: IPR0 | 98.59 | |
| PF14535 | 96 | AMP-binding_C_2: AMP-binding enzyme C-terminal dom | 97.92 | |
| PLN02249 | 597 | indole-3-acetic acid-amido synthetase | 97.88 | |
| PLN02247 | 606 | indole-3-acetic acid-amido synthetase | 97.78 | |
| PLN02620 | 612 | indole-3-acetic acid-amido synthetase | 97.34 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 95.75 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 87.64 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 87.53 | |
| TIGR03089 | 227 | conserved hypothetical protein TIGR03089. This pro | 80.28 |
| >KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-81 Score=627.56 Aligned_cols=513 Identities=40% Similarity=0.618 Sum_probs=440.9
Q ss_pred hhhcccCHHHHHhhhhhcCCCc-eeEEECC---ccccHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEcCChHHHHHHHH
Q 008389 15 ANYMALTPLWFLDRAATVHPTR-TSVVHGS---TRYTWLQTYQRCRRLASALCKRS--IGLGCTVAIIAPNIPAIYEAHF 88 (567)
Q Consensus 15 ~~~~~~t~~~~l~~~a~~~p~~-~a~~~~~---~~~Ty~el~~~~~~lA~~L~~~g--~~~gd~V~l~~~~~~~~~~~~l 88 (567)
.+...++....+.+.+..++++ +++++.. +.+||.|+..++.++|..|.++| +++||+|++++||++++.+++|
T Consensus 11 ~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~g~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~l 90 (537)
T KOG1176|consen 11 ANNTPLTPITFLGRPAFVYLDRNTSLVYQDSDGRELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELAL 90 (537)
T ss_pred ccCccccccccccccccccccCcceEEEecCCCcEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHH
Confidence 3444555555555555556555 7777755 99999999999999999999875 8899999999999999999999
Q ss_pred hhhhcCCeeeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhcc
Q 008389 89 GVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYAL 168 (567)
Q Consensus 89 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 168 (567)
||+.+|+++.++||.+.+.++.++++.++++++|++.+..+.+.+....+. ..++.+........ ...
T Consensus 91 a~~~~Ga~~~~~Np~~~~~ei~~~~~~s~~kiif~d~~~~~~i~~~~~~~~---------~~i~~l~~~~~~~~---~~~ 158 (537)
T KOG1176|consen 91 AVPMAGAVLNPLNPRLTASEIAKQLKDSKPKLIFVDEDFYDKISEATSKLA---------LKIIVLTGDEGVIS---ISD 158 (537)
T ss_pred HHHHcCccccccCcccCHHHHHHHHHhcCCeEEEEcCchHHHHHHHHhhcC---------CceEEEecccCccc---ccc
Confidence 999999999999999999999999999999999999999998887655432 44444444311100 000
Q ss_pred CCChHH-HHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccc
Q 008389 169 GRGAVE-YEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFH 247 (567)
Q Consensus 169 ~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~ 247 (567)
...... ++.+.....+.. ..+...+|+++++|||||||.||||.+||++++.+.......+.+...++.++.+|++|
T Consensus 159 ~~~~~~~~~~~~~~~~~~~--~~~~~~dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~~~~~~~v~l~~lPl~H 236 (537)
T KOG1176|consen 159 LVEDLDAFEDLMPEGLPDG--IRPVSEDDTAAILYSSGTTGLPKGVVLSHRNLIANTLSIKIGWELTSDDVYLCTLPLFH 236 (537)
T ss_pred ccccccchhhccccCCCcc--cccCCCCCeEEEecCCCCCCCCceEEEecHHHHHHHHHhhhcccCCCCceEEEechHHH
Confidence 011111 555555555444 45677899999999999999999999999999999887777778888999999999999
Q ss_pred hhhhHHHHHHhhhcCeeEEe-ccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHH
Q 008389 248 CNGWCYTWSLAALCGTSICL-RQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSV 326 (567)
Q Consensus 248 ~~g~~~~~~~~~~g~~~~~~-~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~ 326 (567)
.+|+...+.+.+.+++.++. ..+++..+++.|++|++|++..+|..+..|++.+....++ ++++|.+.+||+++++++
T Consensus 237 ~~Gl~~~~~~~~~~~~~ii~~~~f~~~~~~~~i~kykvt~~~~vP~~~~~l~~~p~~~~~~-l~sl~~v~~gga~~~~~~ 315 (537)
T KOG1176|consen 237 IYGLITLLLSLLAGGTTIICLRKFDAELFLDLIEKYKVTHLFLVPPVLNMLAKSPIVKKYD-LSSLRSVLSGGAPLSPAT 315 (537)
T ss_pred HhHHHHHHHHHHhCCceEEECCCCCHHHHHHHHHHhCEEEEEcChHHHHHHhcCCccCccc-CCccEEEEecCCCCCHHH
Confidence 99999999977776666665 5679999999999999999999999999999988555566 999999999999999999
Q ss_pred HHHHHhc-C-CeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEE
Q 008389 327 LHAMSQK-G-FHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGE 404 (567)
Q Consensus 327 ~~~~~~~-~-~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Ge 404 (567)
.+++.+. + ..+.+.||+||+++.++.+...++ +..+++|.+++++ ...|.+ ++|+.++++ +.||
T Consensus 316 ~~~~~~~l~~~~v~q~YGmTE~~~~~~~~~~~~e----------~k~~svG~~~~g~-~~~v~~-e~g~~l~~~--~~GE 381 (537)
T KOG1176|consen 316 LEKVKERLPNVTVIQGYGMTEAGGLITSNDWGPE----------RKPGSVGRLLPGV-RVKVLD-ETGVSLGPN--QTGE 381 (537)
T ss_pred HHHHHHhCCCceEEEeeccccccCceeecCCCcc----------CcccccCccccce-EEEeeC-CCCCCCCCC--CceE
Confidence 9999855 5 899999999999999888765432 4569999999977 555555 459999998 7899
Q ss_pred EEEecccccccccCCCccchhcccC-CccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEE
Q 008389 405 IVMSGNVVMKGYLKNPKANEETFAN-GWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASV 483 (567)
Q Consensus 405 i~v~~~~~~~gy~~~~~~~~~~~~~-g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v 483 (567)
||++|+.++.||+++|+.|.+.|.+ |||+|||+|++|+||+|++.+|++|+||.+|++|+|.|||++|..||.|.|++|
T Consensus 382 I~vrg~~imkGY~~NpeaT~~~~~~~GW~~TGDiGy~D~DG~l~IvdR~KdlIk~~G~qv~P~EiE~vL~~hP~V~eaaV 461 (537)
T KOG1176|consen 382 ICVRGPQVMKGYLKNPEATKEAFDDDGWFHTGDLGYFDEDGYLYIVDRSKDLIKYGGEQVSPAEIEAVLLTHPDVLEAAV 461 (537)
T ss_pred EEEECcccchhhcCChHHHHhhcccCCccccCceEEEcCCCeEEEecchhhheeeCCEEeCHHHHHHHHHhCCCccEEEE
Confidence 9999999999999999999999976 999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHHHHcCC
Q 008389 484 VARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKEMGP 561 (567)
Q Consensus 484 ~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~~ 561 (567)
++.+++.+|+.++|+|+.+++. ..++ ++|.+++++++++|+.|..+.|++ ||+|++|||+|+.||+.+.+...
T Consensus 462 vgipDe~~Ge~p~A~VV~k~g~-~lte----~di~~~v~k~l~~y~~~~~V~Fvd~lPKs~~GKi~R~~lr~~~~~~~~ 535 (537)
T KOG1176|consen 462 VGIPDEVWGETPAAFVVLKKGS-TLTE----KDIIEYVRKKLPAYKLPGGVVFVDELPKTPNGKILRRKLRDIAKKLGS 535 (537)
T ss_pred EcccccccCCcceEEEEecCCC-cCCH----HHHHHHHHhhCChhhccCeEEEeccCCCCCcchHHHHHHHHHHHhccc
Confidence 9999999999999999999966 6667 899999999999999999999998 99999999999999999988643
|
|
| >COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-78 Score=601.79 Aligned_cols=492 Identities=27% Similarity=0.381 Sum_probs=420.3
Q ss_pred HHHhhhhh-cCCCceeEEECC-----ccccHHHHHHHHHHHHHHHHH-ccCCCCCEEEEEcCChHHHHHHHHhhhhcCCe
Q 008389 24 WFLDRAAT-VHPTRTSVVHGS-----TRYTWLQTYQRCRRLASALCK-RSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAV 96 (567)
Q Consensus 24 ~~l~~~a~-~~p~~~a~~~~~-----~~~Ty~el~~~~~~lA~~L~~-~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~ 96 (567)
..++++.+ ..+|+.|+++.+ +++||+||.+.+.++|+.|++ .|+ +||||++++|+.+++++++|||+++|++
T Consensus 13 n~~dr~~~~~~~~~~aii~~~e~~~~~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~pe~~~a~LA~~riGAI 91 (528)
T COG0365 13 NALDRHLEADRPDDTAIIFDGEDGLFRELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEAVIALLATARIGAI 91 (528)
T ss_pred hhhhhhhhccCCCceEEEEEcCCCCceEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCHHHHHHHHHHHHcCCE
Confidence 35666665 347899999964 679999999999999999986 578 9999999999999999999999999999
Q ss_pred eeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHH--HHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHH
Q 008389 97 LNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEAL--KIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVE 174 (567)
Q Consensus 97 ~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 174 (567)
.+|+.+.++++.+..++++++++++|+.+......+... ..... ....++++.... ..
T Consensus 92 ~~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~------~~~~~iv~~r~~--------------~~ 151 (528)
T COG0365 92 PAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADA------VLSSVVVVPRLG--------------LW 151 (528)
T ss_pred EeecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHH------hhcceEEecccc--------------cc
Confidence 999999999999999999999999999887655433211 11110 011134433321 56
Q ss_pred HHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHH-HHhccCCCcEEEEecCccchhhhHH
Q 008389 175 YEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVA-LIWGMNEGAVYLWTLPMFHCNGWCY 253 (567)
Q Consensus 175 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~-~~~~~~~~d~~~~~~p~~~~~g~~~ 253 (567)
|.+.+.......... +.+.+|+++++|||||||+||+|+++|.+++....... ..+.+.++|++++..++.|++|..+
T Consensus 152 ~~~~~~~~~~~~~~~-~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~~~~~~Dv~w~~ad~GW~~g~~~ 230 (528)
T COG0365 152 YDEAVEKASEKFEFE-PLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGDRFWNSSDPGWIYGLWY 230 (528)
T ss_pred HHHHhhccCCCCCcc-ccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhhCCCCCCEEEeCCCchhhhCchH
Confidence 777776665554333 37889999999999999999999999998776665554 4678889999999999999999988
Q ss_pred HHHH-hhhcCeeEEecc--C-CHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHH
Q 008389 254 TWSL-AALCGTSICLRQ--V-TAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHA 329 (567)
Q Consensus 254 ~~~~-~~~g~~~~~~~~--~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~ 329 (567)
.+.. ++.|++.+++.. + ++..+++.|+++++|++++.|+.+++|.+.....+++ +++||.+.+.|||++++..++
T Consensus 231 ~v~~pL~~Gat~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~~~~~d-lssLr~~~SaGEPLnpe~~~w 309 (528)
T COG0365 231 SVFSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGLGEPYD-LSSLRVLGSAGEPLNPEAFEW 309 (528)
T ss_pred HHHHHHhcCCeEEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCCccccc-chhheeeeccCCCCCHHHHHH
Confidence 5554 556777766632 3 4899999999999999999999999999987744455 999999999999999999999
Q ss_pred HHhc-CCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEe
Q 008389 330 MSQK-GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMS 408 (567)
Q Consensus 330 ~~~~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~ 408 (567)
+.+. |++|.+.||+||++++...... ....++.|.|+||. .++|+|++ |++++++ + |+|+++
T Consensus 310 ~~~~~g~~i~d~~gqTEtg~~~~~~~~------------~~~~g~~g~p~pG~-~~~vvdd~-g~~~~~~--~-G~Lvi~ 372 (528)
T COG0365 310 FYSALGVWILDIYGQTETGMGFIAGRP------------PVKNGSSGLPLPGY-AVRRVDDE-GNPVPPG--V-GELVVR 372 (528)
T ss_pred HHHHhCCCEeccccccccCccccCCCC------------CcCCCCCCCCCCCc-eeEEECCC-CCcCCCC--c-eEEEEe
Confidence 9965 9999999999999854443221 12335569999999 89999999 9999998 6 999999
Q ss_pred cc--cccccccCCCccchhcccCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEe
Q 008389 409 GN--VVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVAR 486 (567)
Q Consensus 409 ~~--~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~ 486 (567)
.+ .++++||++++...+.+-++||.|||.+++|+||+++++||.||+||+.|.++.+.|||++|.+||.|.||+|++.
T Consensus 373 ~~~p~~~~~~w~d~er~~~~y~~~~y~tGD~~~~DedGy~~i~GR~DDvI~vsG~Rig~~EvE~~l~~hP~VaEaAvVg~ 452 (528)
T COG0365 373 LPWPGMALTYWNDPERYKEAYFGRWYRTGDWAERDEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAHPAVAEAAVVGV 452 (528)
T ss_pred CCCchhhhhhhCCHHHHHHHHhhceeecCceeEEccCCCEEEEeeccceEeccCeeccHHHHHHHHHhCcceeeeEEEec
Confidence 87 8999999999999988877799999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHHHH
Q 008389 487 ADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKE 558 (567)
Q Consensus 487 ~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~ 558 (567)
+++..|+.+.+||+++++. ..+ ++.++|++++++.+.++..|+.|.|++ ||+|.+|||+|+.||+.+.+
T Consensus 453 pd~~kg~~v~afVvL~~g~-~~~--~L~~ei~~~vr~~~~~~~~p~~i~fv~~LPkT~sGKI~R~~lr~~~~~ 522 (528)
T COG0365 453 PDPGKGQIVLAFVVLAAGV-EPN--ELAEEIRRHVARNIGPHAIPRKIRFVDELPKTASGKIQRRLLRKILHK 522 (528)
T ss_pred cCCCCCcEEEEEEEecCCC-ChH--HHHHHHHHHHHhccCcccCCceEEEecCCCCCCcccHHHHHHHHHHhh
Confidence 9999999999999999998 555 888999999999888899999999998 99999999999999999885
|
|
| >KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-78 Score=561.03 Aligned_cols=523 Identities=25% Similarity=0.349 Sum_probs=448.3
Q ss_pred hcccCHHHHHhhhhhcCCCceeEEEC--CccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcC
Q 008389 17 YMALTPLWFLDRAATVHPTRTSVVHG--STRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAG 94 (567)
Q Consensus 17 ~~~~t~~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G 94 (567)
.-..|+.++++..+++.||+.|+++. +.++||+||.+.++.+|.+|..+|+++||||+++.||+.+|+..+|||.++|
T Consensus 47 l~~~Tigq~l~~~t~~v~dkea~Vf~~eg~R~Tf~~~~~ev~slAaGll~lGL~kGDrVgvwgpN~~~w~l~~lA~A~AG 126 (596)
T KOG1177|consen 47 LDSETIGQLLETTTERVPDKEAAVFDHEGIRLTFSEFVSEVESLAAGLLSLGLKKGDRVGVWGPNSYEWVLCQLACARAG 126 (596)
T ss_pred cccccHHHHHHHHhhccCcceEEEEeeccchhhHHHHHHHHHHHHhhHHhhcCCCCCEEEEecCChHHHHHHHHHHHHhc
Confidence 33679999999999999999999984 5789999999999999999999999999999999999999999999999999
Q ss_pred CeeeeccccCChHHHHHHHhccCceEEEEcccch-----HHHHHHHHHHhhhcCC------CCCCCeEEEecCCCCCccc
Q 008389 95 AVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYF-----KLAEEALKIMEEKSNG------RFKPPLLIVIGDESCDPKD 163 (567)
Q Consensus 95 ~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~------~~~~~~~i~~~~~~~~~~~ 163 (567)
.+.+++||.+...+++..|++.+++++|+.+.+. +.+.+...++....-+ .+...+++..+++.
T Consensus 127 ~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~lp~lthvi~~~ed~----- 201 (596)
T KOG1177|consen 127 LVLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSELLPELTHVILADEDH----- 201 (596)
T ss_pred eEEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCccccccccccceEEEecCCCC-----
Confidence 9999999999999999999999999999977543 3344333333222111 13344555555332
Q ss_pred chhccCCChHHHHHHHhcCCCCCCCC-----CCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcE
Q 008389 164 LKYALGRGAVEYEKFLQTGDPQFDWK-----PPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAV 238 (567)
Q Consensus 164 ~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~ 238 (567)
...+...+++++.......... .-..+++++.|.|||||||.|||+-+||-++++++......++++..++
T Consensus 202 ----~~~Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~~vg~r~g~~e~~~ 277 (596)
T KOG1177|consen 202 ----PLPGAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNARAVGARAGYNEKHR 277 (596)
T ss_pred ----cCCCceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhhHHHHHHHhCcCcceE
Confidence 2346677788777665432111 1246789999999999999999999999999999999999999999999
Q ss_pred EEEecCccchhhhHHH-HHHhhhcCeeEEe-ccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhh
Q 008389 239 YLWTLPMFHCNGWCYT-WSLAALCGTSICL-RQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVN 316 (567)
Q Consensus 239 ~~~~~p~~~~~g~~~~-~~~~~~g~~~~~~-~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~ 316 (567)
+++..|++|.+|.... +.++..|+++++. +.+++...+.+|+++|+|.++++|++|..|++.+.....+ ++++|.++
T Consensus 278 i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~Dlln~~~~~~~~-~s~lr~~v 356 (596)
T KOG1177|consen 278 ICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFVDLLNIPQKQQVD-LSSLRKGV 356 (596)
T ss_pred EEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHHHHhcchhhccCc-hhhhhhhe
Confidence 9999999999996654 4555667777775 5699999999999999999999999999999999988888 99999999
Q ss_pred ccCCCCCHHHHHHHHh-cCC-eeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCc
Q 008389 317 TAGAAPPPSVLHAMSQ-KGF-HVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQP 394 (567)
Q Consensus 317 ~~G~~l~~~~~~~~~~-~~~-~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~ 394 (567)
+||+++++++.+.+.. .+. .+...||+||++...+.... ++.......++|..+++. +..|+|.+ |..
T Consensus 357 igGa~~s~eLlk~iv~~~~m~~i~v~YG~TEts~v~~~~~~--------~D~~~~~~ksVG~~m~h~-Ea~iv~~~-g~~ 426 (596)
T KOG1177|consen 357 IGGAPVSPELLKLIVNQMNMKDIAVAYGLTETSPVLFMSLL--------GDPPEERIKSVGHLMDHY-EAAIVDKD-GSE 426 (596)
T ss_pred eCCCCCCHHHHHHHHHhhCceeeEEEeeccccCcceeeecC--------CCCHHHHHhhhhhccccc-ccccccCC-CCc
Confidence 9999999999999984 454 58889999999877776543 334455668899999999 89999955 999
Q ss_pred cCCCCCceEEEEEecccccccccCCCccchhcc-cCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHh
Q 008389 395 VPADGKTIGEIVMSGNVVMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMY 473 (567)
Q Consensus 395 ~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~ 473 (567)
++.+ ..|||+++|.+.+.|||++++.+.+.. .|.||+|||+|.+|++|.++++||.+|+|+.+|++|+|.|||+.|.
T Consensus 427 v~~~--~~Gel~iRGY~tMl~Ywg~~~kT~eti~~drW~~TGDi~~m~enG~i~iVGRskdmI~rGGENVyP~ElE~fL~ 504 (596)
T KOG1177|consen 427 VPLG--TKGELLIRGYSTMLGYWGEEEKTKETIGNDRWYDTGDIAVMDENGTIEIVGRSKDMIIRGGENVYPTELEDFLN 504 (596)
T ss_pred cccC--CCceEEEEechhheeecCCcccchhhcccccceecCceEEEcCCCcEEEEEcccCeEEeCCcccChHHHHHHHh
Confidence 9999 669999999999999999998887766 6889999999999999999999999999999999999999999999
Q ss_pred cCCCceeeEEEEeecCCCCCcceEEEEEcCCccc-hhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHH
Q 008389 474 LHPAVLEASVVARADERWGESPCAFVTLKPEVDK-SNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHV 551 (567)
Q Consensus 474 ~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~-~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~ 551 (567)
+||.|.++.|++++++..|+.++|+|.++.+... .+. ++|.++|+.++.++.+|++|.|.+ +|+|.+|||+|-+
T Consensus 505 ~hp~V~~a~VVGV~D~R~GE~VCA~vRLqe~~e~~~t~----E~lKa~Ck~klaHFKiPky~vf~~~FPlT~tGKIqKFe 580 (596)
T KOG1177|consen 505 KHPLVKEAHVVGVPDERLGEEVCACVRLQEGAEGKTTA----ETLKAMCKGKLAHFKIPKYFVFVDEFPLTTTGKIQKFE 580 (596)
T ss_pred hCCCeeeEEEEccCCCcccceEEEEEEeeccccccccH----HHHHHHHhcccccccCCcEEEEeccCcccccccchhHH
Confidence 9999999999999999999999999999988632 234 789999999999999999999988 9999999999999
Q ss_pred HHHHHHHcCCcccc
Q 008389 552 LRAKAKEMGPVRKS 565 (567)
Q Consensus 552 l~~~~~~~~~~~~~ 565 (567)
+|++++.......+
T Consensus 581 ir~~~k~~l~l~~~ 594 (596)
T KOG1177|consen 581 IREMSKGHLGLFTV 594 (596)
T ss_pred HHHHHHhhcceeee
Confidence 99999865544433
|
|
| >COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-76 Score=613.55 Aligned_cols=508 Identities=33% Similarity=0.496 Sum_probs=433.5
Q ss_pred hhcccCHHHHHhhhhhcCCCceeEEECCcc--ccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhc
Q 008389 16 NYMALTPLWFLDRAATVHPTRTSVVHGSTR--YTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMA 93 (567)
Q Consensus 16 ~~~~~t~~~~l~~~a~~~p~~~a~~~~~~~--~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~ 93 (567)
.++.+++.+++++.+..+|+++|+++.+.. +||+||++++.++|..|++.|+++||+|+|+++|++++++++|||+++
T Consensus 7 ~~~~~~~~~~l~~~a~~~~~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~~v~~gdrVail~~N~~e~~~~~~a~~~~ 86 (534)
T COG0318 7 MTAELTLASLLERAARRNPDRPALIFLGRGGRLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRA 86 (534)
T ss_pred ccccccHHHHHHHHHHhCCCceEEEEcCCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhc
Confidence 355689999999999999999999998877 999999999999999999999999999999999999999999999999
Q ss_pred CCeeeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChH
Q 008389 94 GAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAV 173 (567)
Q Consensus 94 G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 173 (567)
|++++|++|.+...++.++++.+++++++++.+..+.........+ ....+.......... . .
T Consensus 87 Gav~vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~---------~-~ 149 (534)
T COG0318 87 GAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAEALP-------VVLVVLLVGDADDRL---------P-I 149 (534)
T ss_pred CEEEeecCcccCHHHHHHHHHhcCCeEEEEcccchhHHHHHhccCC-------cceEEEecccccccc---------c-c
Confidence 9999999999999999999999999999999884444333322111 111122211111000 0 2
Q ss_pred HHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhc--cCCCcEEEEecCccchhhh
Q 008389 174 EYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWG--MNEGAVYLWTLPMFHCNGW 251 (567)
Q Consensus 174 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~--~~~~d~~~~~~p~~~~~g~ 251 (567)
.+++.............+.+++++++++|||||||.||+|++||+|+..+.......++ +++.|++++.+|++|.+|+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~Gl 229 (534)
T COG0318 150 TLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGL 229 (534)
T ss_pred cHHHHhhccCCcccccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHhcccCCCCceEEEecChHHHHHH
Confidence 45555444333333333367899999999999999999999999999999988888888 8999999999999999999
Q ss_pred HHHHHHh-hhcCeeEEec--cCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCc-hhhhhccCCCCCHHHH
Q 008389 252 CYTWSLA-ALCGTSICLR--QVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPH-VVHVNTAGAAPPPSVL 327 (567)
Q Consensus 252 ~~~~~~~-~~g~~~~~~~--~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~-lr~i~~~G~~l~~~~~ 327 (567)
...+.++ +.|++.++.. .+++..++..+.++++|++.++|+++..+++........ +.. +|.++.||+++++++.
T Consensus 230 ~~~~~~~~~~G~~~v~~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~~~~-~~~~lr~~~~gg~~~~~~~~ 308 (534)
T COG0318 230 IVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDDD-LSSSLRLVLSGGAPLPPELL 308 (534)
T ss_pred HHHHHHHHHcCCEEEeCCCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCccCccc-cccceEEEEecCCcCCHHHH
Confidence 9888875 4555555555 489999999999999999999999999999988776655 554 9999999999999999
Q ss_pred HHHHhc-C-CeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEE
Q 008389 328 HAMSQK-G-FHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEI 405 (567)
Q Consensus 328 ~~~~~~-~-~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei 405 (567)
+++.+. + ..+.+.||+||+++.++...... . ....+.+|.|+|++ +++|+|++++.+.| | ++|||
T Consensus 309 ~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~-~--------~~~~~~~G~~~pg~-~v~Ivd~~~~~~~p-g--~vGei 375 (534)
T COG0318 309 ERFEERFGPIAILEGYGLTETSPVVTINPPDD-L--------LAKPGSVGRPLPGV-EVRIVDPDGGEVLP-G--EVGEI 375 (534)
T ss_pred HHHHHHhCCCceEEeecccccCceeecCCCch-h--------hhcCCcccccCCCc-EEEEEeCCCCccCC-C--CceEE
Confidence 999955 5 47999999999987776654322 0 23446669999999 89999999776666 5 79999
Q ss_pred EEecccccccccCCCccchhcccC-CccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEE
Q 008389 406 VMSGNVVMKGYLKNPKANEETFAN-GWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVV 484 (567)
Q Consensus 406 ~v~~~~~~~gy~~~~~~~~~~~~~-g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~ 484 (567)
+++||+++.|||++|+.+...|.+ |||+|||+|++|++|++++.||.+|+|+++|++|+|.|||.++.++|.|.+++|+
T Consensus 376 ~irgp~v~~GY~~~pe~t~~~f~~~gW~~TGDlg~~d~~G~l~i~gR~kd~I~~gG~ni~p~eiE~~l~~~~~V~~aavv 455 (534)
T COG0318 376 WVRGPNVMKGYWNRPEATAEAFDEDGWLRTGDLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVLAEHPAVAEAAVV 455 (534)
T ss_pred EEECchhhhhhcCChHHHHHhhccCCeeeecceEEEcCCccEEEEeccceEEEeCCeEECHHHHHHHHHhCCCcceEEEE
Confidence 999999999999999999998886 9999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCcceEEEEEcCCcc-chhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHHHH
Q 008389 485 ARADERWGESPCAFVTLKPEVD-KSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKE 558 (567)
Q Consensus 485 ~~~~~~~g~~~~~~v~~~~~~~-~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~ 558 (567)
+++++.+|++++++++++++.. ..+. ++|.++++++++.+.+|+.+.+++ +|+|++||++|+.|++.+.+
T Consensus 456 gvpd~~~Ge~~~a~v~~~~~~~~~~~~----~~i~~~~~~~l~~~~~P~~v~~v~~lP~t~sGKi~r~~lr~~~~~ 527 (534)
T COG0318 456 GVPDERWGERVVAVVVLKPGGDAELTA----EELRAFLRKRLALYKVPRIVVFVDELPRTASGKIDRRALREEYRA 527 (534)
T ss_pred eCCCCccCceEEEEEEEcCCCCCCCCH----HHHHHHHHhhhhcccCCeEEEEeCCCCCCCchhhhHHHHHHHHHh
Confidence 9999999999999999998742 2234 789999999999999999999987 99999999999999999887
|
|
| >PTZ00237 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-72 Score=600.63 Aligned_cols=517 Identities=19% Similarity=0.235 Sum_probs=412.6
Q ss_pred HHHHhhhhhc--CCCceeEEEC------CccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcC
Q 008389 23 LWFLDRAATV--HPTRTSVVHG------STRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAG 94 (567)
Q Consensus 23 ~~~l~~~a~~--~p~~~a~~~~------~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G 94 (567)
.++++++++. +|+++|+++. .+++||+||++++.++|+.|++.|+++||+|+++++|++++++++|||+++|
T Consensus 62 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~~~~~lA~~~~G 141 (647)
T PTZ00237 62 YNVLDIHVKNPLKRDQDALIYECPYLKKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLIAMLSCARIG 141 (647)
T ss_pred HHHHHHhhcccCCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhC
Confidence 5777887754 7999999883 3689999999999999999999999999999999999999999999999999
Q ss_pred CeeeeccccCChHHHHHHHhccCceEEEEcccc---------hHHHHHHHHHHhhhcCCCCCCCeEEEecCCCC-Ccccc
Q 008389 95 AVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEY---------FKLAEEALKIMEEKSNGRFKPPLLIVIGDESC-DPKDL 164 (567)
Q Consensus 95 ~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~ 164 (567)
++++|+++.++.+++.+++++++++++|+++.. .+.+.++.. .. ......++.+..... .....
T Consensus 142 av~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~vi~~~~~~~~~~~~~ 215 (647)
T PTZ00237 142 ATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIE-LS-----TFKPSNVITLFRNDITSESDL 215 (647)
T ss_pred cEEEeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHh-cc-----cCCCCEEEEEEcCCccccccc
Confidence 999999999999999999999999999997531 222222221 10 001234444422110 00000
Q ss_pred ----hhccCCChHHHHHHHhcCC----CCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHH-HHHHHHHHHHHhccCC
Q 008389 165 ----KYALGRGAVEYEKFLQTGD----PQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRG-AYLMSLSVALIWGMNE 235 (567)
Q Consensus 165 ----~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~-l~~~~~~~~~~~~~~~ 235 (567)
..........|++++.... .......+.+.+++++|+|||||||.||||+++|.+ +..........+....
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~ 295 (647)
T PTZ00237 216 KKIETIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRSIIEKDI 295 (647)
T ss_pred ccccccCCCcccccHHHHHhhhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHHhcCCCC
Confidence 0000112345666664321 111112335678999999999999999999999998 4443333344456778
Q ss_pred CcEEEEecCccchhhhHHHHHHhhhcCeeEEecc--CC----HHHHHHHHHhhCceEeeeCcHHHHHHHcCCCC-----C
Q 008389 236 GAVYLWTLPMFHCNGWCYTWSLAALCGTSICLRQ--VT----AKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSE-----D 304 (567)
Q Consensus 236 ~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~--~~----~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~-----~ 304 (567)
++++++..|++|+.+....+.+++.|+++++... .. +..+++.|+++++|+++++|++++.|++.... .
T Consensus 296 ~d~~~~~~~~~w~~~~~~~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~ 375 (647)
T PTZ00237 296 PTVVFSHSSIGWVSFHGFLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPEATIIRS 375 (647)
T ss_pred CcEEEEcCCCceEeeHHHHHHHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCcccccccc
Confidence 8999999999998777677777888888887643 12 68899999999999999999999999875322 2
Q ss_pred CcCCCCchhhhhccCCCCCHHHHHHHHh-cCCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccc
Q 008389 305 TILPLPHVVHVNTAGAAPPPSVLHAMSQ-KGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEK 383 (567)
Q Consensus 305 ~~~~l~~lr~i~~~G~~l~~~~~~~~~~-~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~ 383 (567)
..+ +++||.++++|+++++++.+++.+ +++++++.||+||+++.+...... .....+++|.|+|++ +
T Consensus 376 ~~~-l~~Lr~i~~~G~~l~~~~~~~~~~~~g~~i~~~yG~TE~~~~~~~~~~~----------~~~~~~s~G~p~~g~-~ 443 (647)
T PTZ00237 376 KYD-LSNLKEIWCGGEVIEESIPEYIENKLKIKSSRGYGQTEIGITYLYCYGH----------INIPYNATGVPSIFI-K 443 (647)
T ss_pred ccC-cchheEEEecCccCCHHHHHHHHHhcCCCEEeeechHHhChhhhccCCC----------CCCCCCCCccCcCCc-e
Confidence 233 889999999999999999999985 589999999999997654432110 112237899999999 8
Q ss_pred eeEeeCCCCCccCCCCCceEEEEEecc---cccccccCCCccchhccc--CCccccCceEEEeCCCcEEEeccccceeee
Q 008389 384 LDVIDTRTQQPVPADGKTIGEIVMSGN---VVMKGYLKNPKANEETFA--NGWYHTGDLGVKHPDNYIEIKDRSKDIIIS 458 (567)
Q Consensus 384 ~~i~d~~~~~~~~~~~~~~Gei~v~~~---~~~~gy~~~~~~~~~~~~--~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~ 458 (567)
++|+|++ |++++.| +.|||++++| .++.|||++++.+...|. +|||+|||+|++++||+++++||+||+||+
T Consensus 444 ~~i~d~~-g~~~~~g--e~GEl~v~~p~~p~~~~gy~~~~~~~~~~f~~~~g~~~TGDlg~~d~dG~l~i~GR~dd~i~~ 520 (647)
T PTZ00237 444 PSILSED-GKELNVN--EIGEVAFKLPMPPSFATTFYKNDEKFKQLFSKFPGYYNSGDLGFKDENGYYTIVSRSDDQIKI 520 (647)
T ss_pred EEEECCC-CCCCCCC--CceEEEEeccCCchhhCceeCCHHHHHHHHhCCCCEEECCcEEEECCCCeEEEEeccCCEEEE
Confidence 9999985 9999887 7899999986 789999999998887774 799999999999999999999999999999
Q ss_pred CceecchHHHHHHHhcCCCceeeEEEEeecCCCCCcceEEEEEcCCcc--chhhHHHHHHHHHHHHhcCCCCCCCceeec
Q 008389 459 GGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVD--KSNEQQLAEDIMKFCRAKMPAYWVPKSIVF 536 (567)
Q Consensus 459 ~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~--~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~ 536 (567)
+|++|+|.+||++|.+||.|.+++|++.+++..|+.++++|+++++.. ..+.+++.++|+++++++|+.+++|+.|++
T Consensus 521 ~G~rI~p~eIE~~l~~~p~V~eaavvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~l~~~i~~~~~~~l~~~~~P~~i~~ 600 (647)
T PTZ00237 521 SGNKVQLNTIETSILKHPLVLECCSIGIYDPDCYNVPIGLLVLKQDQSNQSIDLNKLKNEINNIITQDIESLAVLRKIII 600 (647)
T ss_pred CCEEeCHHHHHHHHHhCCCceeeEEEeeEcCCCCCEEEEEEEeccCccccCCCHHHHHHHHHHHHHhhcCccccCcEEEE
Confidence 999999999999999999999999999999998999999999886431 234456778899999999999999999999
Q ss_pred Cc-ccCCCCccccHHHHHHHHHHcC
Q 008389 537 GP-LPKTATGKIQKHVLRAKAKEMG 560 (567)
Q Consensus 537 ~~-lP~t~~GKi~r~~l~~~~~~~~ 560 (567)
++ ||+|++||++|+.|++++....
T Consensus 601 v~~lP~T~sGKi~R~~Lr~~~~~~~ 625 (647)
T PTZ00237 601 VNQLPKTKTGKIPRQIISKFLNDSN 625 (647)
T ss_pred cCCCCCCCCccEeHHHHHHHHcCCC
Confidence 88 9999999999999999986554
|
|
| >PLN02479 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-71 Score=589.00 Aligned_cols=564 Identities=85% Similarity=1.396 Sum_probs=456.4
Q ss_pred cccccccccchhhhcccCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHH
Q 008389 4 AKGIDDLPKNAANYMALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAI 83 (567)
Q Consensus 4 ~~~~~~~~~~~~~~~~~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~ 83 (567)
.+.++++-..-+.+..++++.++++.+..+|+++|+++.+.++||+||++++.++|..|.+.|+++||+|+++++|++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~ 83 (567)
T PLN02479 4 ERDIDDLPKNAANYTALTPLWFLERAAVVHPTRKSVVHGSVRYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAM 83 (567)
T ss_pred ccccccccCccccccccCHHHHHHHHHhhCCCceEEEECCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHH
Confidence 34566666766777778899999999999999999999889999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcCCeeeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCccc
Q 008389 84 YEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKD 163 (567)
Q Consensus 84 ~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 163 (567)
+++++||+++|++++|+++.++.+++.++++.+++++++++++..+...+....+............++.+.........
T Consensus 84 ~~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (567)
T PLN02479 84 YEAHFGVPMAGAVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKS 163 (567)
T ss_pred HHHHHHHHhCCcEEEEeccccCHHHHHHHHhhcCceEEEEchhhhhHHHHHHHHHhhcccccCCCceEEEecCCcCCccc
Confidence 99999999999999999999999999999999999999999887766555444332111111122334444332211111
Q ss_pred chhccCCChHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEec
Q 008389 164 LKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTL 243 (567)
Q Consensus 164 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~ 243 (567)
.......+...+.+++....+......+...+++++++|||||||.||+|.+||+++..........++++.++++++.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (567)
T PLN02479 164 LQYALGKGAIEYEKFLETGDPEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIWGMNEGAVYLWTL 243 (567)
T ss_pred cccccccCcccHHHHHhccccccccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhcCCCCCCEEEEec
Confidence 11111223445677766543322222223445678899999999999999999999877666555667888999999999
Q ss_pred CccchhhhHHHHHHhhhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCC
Q 008389 244 PMFHCNGWCYTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPP 323 (567)
Q Consensus 244 p~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~ 323 (567)
|++|.+++...+...+.+++.+++..+++..+++.++++++|++.++|+++..|.+.........+++++.++++|++++
T Consensus 244 p~~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~~~~~G~~~~ 323 (567)
T PLN02479 244 PMFHCNGWCFTWTLAALCGTNICLRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSETILPLPRVVHVMTAGAAPP 323 (567)
T ss_pred chhhhhhHHHHHHHHhhcCceEeccCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhcccccccceeEEEEcCCCCC
Confidence 99999998777666667777777778899999999999999999999999999987654333222788999999999999
Q ss_pred HHHHHHHHhcCCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceE
Q 008389 324 PSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIG 403 (567)
Q Consensus 324 ~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~G 403 (567)
+.+.+.+.+.++++++.||+||+++.++.+...+.+...+...........|.+.+++..++|+|++++.+++.++.+.|
T Consensus 324 ~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~i~d~~~~~~~~~~g~~~G 403 (567)
T PLN02479 324 PSVLFAMSEKGFRVTHTYGLSETYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMG 403 (567)
T ss_pred HHHHHHHHhcCCceecccccccccccccceeccccccccCcccccccccccCCCcCCcCceeEEcCCCCcccCCCCCCce
Confidence 99999998778999999999999766555443333222221111122245788888874488999777888887654689
Q ss_pred EEEEecccccccccCCCccchhcccCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEE
Q 008389 404 EIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASV 483 (567)
Q Consensus 404 ei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v 483 (567)
||+++|++++.|||++++.+...|.+|||+|||+|+++++|++++.||.+|+|+.+|++|+|.+||..+.++|.|.+++|
T Consensus 404 El~v~g~~~~~GY~~~~~~t~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v 483 (567)
T PLN02479 404 EIVMRGNMVMKGYLKNPKANEEAFANGWFHSGDLGVKHPDGYIEIKDRSKDIIISGGENISSLEVENVVYTHPAVLEASV 483 (567)
T ss_pred EEEEeccchhhhhhcCcccccchhcCCceecceeEEEcCCccEEEeccccceEEeCCEEEcHHHHHHHHHhCcccceeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCcccCCCCccccHHHHHHHHHHcCCcc
Q 008389 484 VARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGPLPKTATGKIQKHVLRAKAKEMGPVR 563 (567)
Q Consensus 484 ~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~lP~t~~GKi~r~~l~~~~~~~~~~~ 563 (567)
++.+++..++.+++++++.++....+.+...++++++++++|+.|+.|..+.+.++|+|++||++|+.|++++.+..++.
T Consensus 484 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~~~iP~t~~gKv~r~~L~~~~~~~~~~~ 563 (567)
T PLN02479 484 VARPDERWGESPCAFVTLKPGVDKSDEAALAEDIMKFCRERLPAYWVPKSVVFGPLPKTATGKIQKHVLRAKAKEMGPVK 563 (567)
T ss_pred EeccchhcCceeEEEEEecCcccccchhhhHHHHHHHHHhhcccccCCceEEeccCCCCCccCeeHHHHHHHHHhhCCcc
Confidence 99998887889999999887642222234457899999999999999999888669999999999999999999999999
Q ss_pred ccCC
Q 008389 564 KSKL 567 (567)
Q Consensus 564 ~~~~ 567 (567)
+|||
T Consensus 564 ~~~~ 567 (567)
T PLN02479 564 KSRL 567 (567)
T ss_pred cccC
Confidence 9986
|
|
| >PLN03102 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-71 Score=586.16 Aligned_cols=538 Identities=49% Similarity=0.848 Sum_probs=426.6
Q ss_pred hhhcccCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcC
Q 008389 15 ANYMALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAG 94 (567)
Q Consensus 15 ~~~~~~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G 94 (567)
+..++.|+.++|.+.++.+|+++|+.+.+.++||+||.+++.++|+.|.+.|+++||+|+|+++|++++++++|||+++|
T Consensus 9 ~~~~~~~~~~~l~~~~~~~p~~~Al~~~~~~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~~la~~~~G 88 (579)
T PLN03102 9 ANNVPLTPITFLKRASECYPNRTSIIYGKTRFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPMAG 88 (579)
T ss_pred cccccccHHHHHHHHHHhCCCCeEEEECCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcC
Confidence 34455789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHH
Q 008389 95 AVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVE 174 (567)
Q Consensus 95 ~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 174 (567)
++++|+++.++.+++.++++.++++++|++.+..+.+.+....+..... .....++.++....... ......+
T Consensus 89 ~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-----~~~~~~~ 161 (579)
T PLN03102 89 AVLNPINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDS--NLNLPVIFIHEIDFPKR-----PSSEELD 161 (579)
T ss_pred cEEeeccccCCHHHHHHHHhccCCeEEEEChhhHHHHHHHHhhcccccc--ccCceEEEecccccccC-----CcccccC
Confidence 9999999999999999999999999999998877666554433321100 01123444432111000 0012234
Q ss_pred HHHHHhcCCCCCCC----CCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhh
Q 008389 175 YEKFLQTGDPQFDW----KPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNG 250 (567)
Q Consensus 175 ~~~~l~~~~~~~~~----~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g 250 (567)
+.+++......... ......+++++|+|||||||.||+|.++|.++..........+.+...+++++.+|++|..|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g 241 (579)
T PLN03102 162 YECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPVYLWTLPMFHCNG 241 (579)
T ss_pred HHHHHhccCCCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhcCCCCCCeEEecCChhhhcc
Confidence 55655443322111 11235689999999999999999999999997655544444456677889999999999999
Q ss_pred hHHHHHHhhhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHH
Q 008389 251 WCYTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAM 330 (567)
Q Consensus 251 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~ 330 (567)
+...+.++..|+++++...+++..+++.|+++++|++.++|+++..|.+........ .++++.+++||+++++.+.+++
T Consensus 242 ~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~~~~~~~gg~~~~~~~~~~~ 320 (579)
T PLN03102 242 WTFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDLSP-RSGPVHVLTGGSPPPAALVKKV 320 (579)
T ss_pred hhHHHHHHHhcCcEEeeccCChHHHHHHHHHcCCeEEEeChHHHHHHHhCcccccCC-cccceEEEECCCCCCHHHHHHH
Confidence 987777888899998888888999999999999999999999999999865433222 5677889999999999999999
Q ss_pred HhcCCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEecc
Q 008389 331 SQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGN 410 (567)
Q Consensus 331 ~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~ 410 (567)
+++++++++.||+||+++.+..+.....+...+...........|.+.++...+.+.+.+++++++.++.+.|||+++|+
T Consensus 321 ~~~g~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~i~~~~~~~~v~~~~~~~GEl~v~g~ 400 (579)
T PLN03102 321 QRLGFQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSILGLADVDVKNKETQESVPRDGKTMGEIVIKGS 400 (579)
T ss_pred HHcCCeEEeecCccccCccccccccccccccCCcccccccccCCCcccccccceEEeccccccccCCCCCCceEEEEECc
Confidence 88899999999999998765544322222111111101111223333333325677777777888765446899999999
Q ss_pred cccccccCCCccchhcccCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeecCC
Q 008389 411 VVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADER 490 (567)
Q Consensus 411 ~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~ 490 (567)
.++.||+++++.+...|.+|||+|||+|++++||++++.||.+|+|+.+|++|+|.+||.++.++|.|.+++|++.+++.
T Consensus 401 ~~~~GY~~~~~~t~~~f~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~ 480 (579)
T PLN03102 401 SIMKGYLKNPKATSEAFKHGWLNTGDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYKYPKVLETAVVAMPHPT 480 (579)
T ss_pred chhhhhcCChhhhHhhhccCceecCceEEEcCCCeEEEEeccCcEEEECCEEECHHHHHHHHHhCCCcceeEEEeccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCcceEEEEEcCCccchhh-----HHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHHHHcC
Q 008389 491 WGESPCAFVTLKPEVDKSNE-----QQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKEMG 560 (567)
Q Consensus 491 ~g~~~~~~v~~~~~~~~~~~-----~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~ 560 (567)
.|+.++++|++.++....+. .....+++++++++|++|++|..+++++ +|+|++||++|++|+++..+..
T Consensus 481 ~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~~~~P~~i~~~~~~P~t~~gKi~r~~L~~~~~~~~ 556 (579)
T PLN03102 481 WGETPCAFVVLEKGETTKEDRVDKLVTRERDLIEYCRENLPHFMCPRKVVFLQELPKNGNGKILKPKLRDIAKGLV 556 (579)
T ss_pred ccceeEEEEEecCcccccccccccccccHHHHHHHHHhhcccccCCeEEEEcccCCCCCcccccHHHHHHHHHHhh
Confidence 88999999998876421100 0012678999999999999999999888 9999999999999999987643
|
|
| >COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-73 Score=516.87 Aligned_cols=506 Identities=27% Similarity=0.398 Sum_probs=445.9
Q ss_pred hhcccCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCC
Q 008389 16 NYMALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGA 95 (567)
Q Consensus 16 ~~~~~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~ 95 (567)
-|.+.|+.++|.++|.++||++|+++.++++||+||+++++++|..|++.||++||+|.+.+||..+|++++||++++|+
T Consensus 24 yW~d~~l~d~L~~~A~~~pdriAv~d~~~~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlvQLpN~~ef~~~~FALlrlGv 103 (542)
T COG1021 24 YWQDRTLTDILTDHAARYPDRIAVIDGERRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFFALLRLGV 103 (542)
T ss_pred cccCCcHHHHHHHHHhhcCCceEEecCcccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCchHHHHHHHHHHHHcCc
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccccCChHHHHHHHhccCceEEEEccc-----chHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCC
Q 008389 96 VLNAVNIRLNAPTIAFLLGHSASAVIMVDQE-----YFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGR 170 (567)
Q Consensus 96 ~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 170 (567)
.+|.-=|.-...+|.++.+.+.++++|.+.. ..+..++.+.+.. ..+++++.++....
T Consensus 104 ~PVlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~~~-------tlr~v~v~ge~~~~---------- 166 (542)
T COG1021 104 APVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHP-------TLRHVIVAGEAEHP---------- 166 (542)
T ss_pred chhhccchhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHhhCC-------cceEEEEccCCCCc----------
Confidence 9998888888999999999999999998763 4455565555554 55666666443211
Q ss_pred ChHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhh
Q 008389 171 GAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNG 250 (567)
Q Consensus 171 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g 250 (567)
......+........+..+.++++++++..+.||||.||.|..||.....+.....+..+++..+++++.+|..|.+.
T Consensus 167 --~~~~~~~~~~a~~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC~~~~~tvyL~~LP~AHNfp 244 (542)
T COG1021 167 --SVLEAALCHPAGLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQQTVYLCALPAAHNFP 244 (542)
T ss_pred --chhhhhhhCccccCCcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhhCcCccceEEEecccccCCC
Confidence 123333444444455556788899999999999999999999999999999988888899999999999999999888
Q ss_pred hH--HHHHHhhhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHH
Q 008389 251 WC--YTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLH 328 (567)
Q Consensus 251 ~~--~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~ 328 (567)
+. ..+..+..||++|+.++.++..-+.+|+++++|+...+|.....|++..+....+ +++||.+=+||..++++..+
T Consensus 245 lssPG~LGv~~agG~VVla~~psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~~~~~-LsSLrllQVGGarl~~~~Ar 323 (542)
T COG1021 245 LSSPGALGVFLAGGTVVLAPDPSPELCFPLIERHGVTVTALVPPLASLWLQAAEWERAD-LSSLRLLQVGGARLSATLAR 323 (542)
T ss_pred CCCcchhheeeeccEEEECCCCCHHHHHHHHHHhccceEEeccHHHHHHHHhhhcccCC-chheeEEeecCcccCHHHHh
Confidence 76 4666778899999999999999999999999999999999999999998887777 99999999999999999999
Q ss_pred HHH-hcCCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEE
Q 008389 329 AMS-QKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVM 407 (567)
Q Consensus 329 ~~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v 407 (567)
++. .+||.+.+.|||.|.-...+ .. .+.......+.|+|+....+++|+|.+ |+++++| |+|++..
T Consensus 324 rv~~~lgC~LQQVFGMAEGLvnyT--RL--------DDp~E~i~~TQGrPlsP~DEvrvvD~d-g~pv~pG--E~G~Llt 390 (542)
T COG1021 324 RVPAVLGCQLQQVFGMAEGLVNYT--RL--------DDPPEIIIHTQGRPLSPDDEVRVVDAD-GNPVAPG--EVGELLT 390 (542)
T ss_pred hchhhhCchHHHHhhhhhhhhccc--cc--------CCchHheeecCCCcCCCcceeEEecCC-CCCCCCC--Ccceeee
Confidence 998 56999999999999533222 11 122334557889999888799999998 9999999 8999999
Q ss_pred ecccccccccCCCccchhcc-cCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEe
Q 008389 408 SGNVVMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVAR 486 (567)
Q Consensus 408 ~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~ 486 (567)
+||...+|||+.++.|...| .+|+|+|||+++.++||++.+.||.+|+|+.+|+||-.+|||+.|..||.|.++++++.
T Consensus 391 RGPYTirGYyrap~HNa~aF~a~GFYrsGD~V~~~~dGyl~V~GR~KDQINRgGEKIAAeEvEn~LL~HP~V~~AAlVam 470 (542)
T COG1021 391 RGPYTIRGYYRAPEHNARAFDADGFYRSGDLVRRDPDGYLVVEGRVKDQINRGGEKIAAEEVENLLLRHPAVHDAALVAM 470 (542)
T ss_pred cCCeeeeeeccCchhhhhccCcCCceecCceeEecCCceEEEEeeehhhhccccchhhHHHHHHHHhhCchhhhhhhhcC
Confidence 99999999999999999999 69999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhc-CCCCCCCceeecCc-ccCCCCccccHHHHHHHHHHcC
Q 008389 487 ADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAK-MPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKEMG 560 (567)
Q Consensus 487 ~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~-l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~ 560 (567)
+++..|++.++||+.++.. .+. .++++++++. +..|++|.+|.+++ +|.|+-|||+++.|++++....
T Consensus 471 pDelLGEksCAfiv~~~~~--~~~----~qlr~~L~~~GlAa~K~PDrie~v~~~P~T~VGKIdKk~Lr~~l~~~~ 540 (542)
T COG1021 471 PDELLGEKSCAFIVVKEPP--LRA----AQLRRFLRERGLAAFKLPDRIEFVDSLPLTAVGKIDKKALRRRLASRL 540 (542)
T ss_pred chhhcCcceeEEEEecCCC--CCH----HHHHHHHHHcchhhhcCCcceeecccCCCcccccccHHHHHHHhhhhc
Confidence 9999999999999998874 344 6788888765 99999999999999 9999999999999999887654
|
|
| >PRK07788 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-72 Score=588.73 Aligned_cols=496 Identities=24% Similarity=0.336 Sum_probs=422.0
Q ss_pred cCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCeeee
Q 008389 20 LTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNA 99 (567)
Q Consensus 20 ~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~ 99 (567)
.|+.++|++.++++||++|+++.++++||+||.+++.++|+.|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus 49 ~~~~~~~~~~a~~~pd~~Al~~~~~~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~ 128 (549)
T PRK07788 49 GPFAGLVAHAARRAPDRAALIDERGTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARIIL 128 (549)
T ss_pred chHHHHHHHHHHHCCCceEEEECCCceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEEEE
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHHHHHH
Q 008389 100 VNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFL 179 (567)
Q Consensus 100 i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l 179 (567)
+++.++.+++.++++.++++++|++.+..+.+........ .. ..+........ ........+++++
T Consensus 129 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~-------~~-~~~~~~~~~~~------~~~~~~~~~~~~~ 194 (549)
T PRK07788 129 LNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSALPPDLG-------RL-RAWGGNPDDDE------PSGSTDETLDDLI 194 (549)
T ss_pred eCCCCCHHHHHHHHHhcCCcEEEECchhHHHHHhhccccc-------cc-eEEEEecCccc------cCCcCcccHHHHh
Confidence 9999999999999999999999999877665544211111 11 12211111100 1113445677776
Q ss_pred hcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhhHHHHHHhh
Q 008389 180 QTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAA 259 (567)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~ 259 (567)
....... .+...+++++++|||||||.||+|.++|+++..........+++..+++++...|++|.+|+...+.++.
T Consensus 195 ~~~~~~~---~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~ 271 (549)
T PRK07788 195 AGSSTAP---LPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRVPFRAGETTLLPAPMFHATGWAHLTLAMA 271 (549)
T ss_pred cCCCCCC---CCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhCCCCcCCeEEEccchHHHHHHHHHHHHHH
Confidence 5433221 2234567899999999999999999999999988888878888999999999999999999987777888
Q ss_pred hcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCC--CCcCCCCchhhhhccCCCCCHHHHHHHHh-cCCe
Q 008389 260 LCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSE--DTILPLPHVVHVNTAGAAPPPSVLHAMSQ-KGFH 336 (567)
Q Consensus 260 ~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~--~~~~~l~~lr~i~~~G~~l~~~~~~~~~~-~~~~ 336 (567)
.|+++++...+++..+++.++++++|++.++|+++..+++.... .... ++++|.+++||+++++++.+++.+ ++++
T Consensus 272 ~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~-~~~lr~i~~gG~~l~~~~~~~~~~~~~~~ 350 (549)
T PRK07788 272 LGSTVVLRRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVLAKYD-TSSLKIIFVSGSALSPELATRALEAFGPV 350 (549)
T ss_pred hCCEEEECCCCCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCcccccCCCC-CCceeEEEEeCCCCCHHHHHHHHHHhCcc
Confidence 88888888788999999999999999999999999999987654 3333 789999999999999999999985 5889
Q ss_pred eeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEecccccccc
Q 008389 337 VTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGY 416 (567)
Q Consensus 337 i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~~gy 416 (567)
+++.||+||++.....+. ........++|.|++++ .++|+|++ +++++.| +.|||+++|+.++.||
T Consensus 351 l~~~YG~TE~~~~~~~~~----------~~~~~~~~~vG~~~~~~-~~~i~d~~-~~~~~~g--~~Gel~v~g~~~~~gY 416 (549)
T PRK07788 351 LYNLYGSTEVAFATIATP----------EDLAEAPGTVGRPPKGV-TVKILDEN-GNEVPRG--VVGRIFVGNGFPFEGY 416 (549)
T ss_pred ceeccCcchhchhhccCh----------hhhhhcCCCcccCCCCc-EEEEECCC-cCCCCCC--CeEEEEEeCCCccccc
Confidence 999999999875443221 11122346899999999 89999987 8899887 8999999999999999
Q ss_pred cCCCccchhcccCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeecCCCCCcce
Q 008389 417 LKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPC 496 (567)
Q Consensus 417 ~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~ 496 (567)
++++.. .+.+|||+|||+|+++++|.+++.||.||+|+++|++|+|.+||+.+.++|+|.+++|++.+++..|+.++
T Consensus 417 ~~~~~~---~~~~g~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~ 493 (549)
T PRK07788 417 TDGRDK---QIIDGLLSSGDVGYFDEDGLLFVDGRDDDMIVSGGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLR 493 (549)
T ss_pred cCCCcc---cccCCceecCceEEEcCCCCEEEeccCcceEEECCEEECHHHHHHHHHhCCCeeEEEEECCcCcccccEEE
Confidence 988765 34589999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred EEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHH
Q 008389 497 AFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAK 555 (567)
Q Consensus 497 ~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~ 555 (567)
++|+++++. ..+. ++++++++++|+.|++|..+.+++ +|+|++||++|++|++.
T Consensus 494 a~vv~~~~~-~~~~----~~l~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~ 548 (549)
T PRK07788 494 AFVVKAPGA-ALDE----DAIKDYVRDNLARYKVPRDVVFLDELPRNPTGKVLKRELREM 548 (549)
T ss_pred EEEEeCCCC-CCCH----HHHHHHHHHhhhcCCCCcEEEEeCCCCCCCCcCEeHHHhhcc
Confidence 999988765 4444 789999999999999999999888 99999999999999753
|
|
| >PLN02654 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-71 Score=591.16 Aligned_cols=520 Identities=21% Similarity=0.265 Sum_probs=412.9
Q ss_pred cCH-HHHHhhhhh-cCCCceeEEEC------CccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhh
Q 008389 20 LTP-LWFLDRAAT-VHPTRTSVVHG------STRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVP 91 (567)
Q Consensus 20 ~t~-~~~l~~~a~-~~p~~~a~~~~------~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~ 91 (567)
+|+ .++|+++++ .+|+++|+++. .+++||+||.+++.++|+.|++.|+++||+|+++++|++++++++|||+
T Consensus 87 ~N~~~~~l~~~~~~~~~~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~e~v~a~lA~~ 166 (666)
T PLN02654 87 TNICYNCLDRNVEAGNGDKIAIYWEGNEPGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACA 166 (666)
T ss_pred eeHHHHHHHHhhccCCCCCEEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence 445 578877775 48999999874 2689999999999999999999999999999999999999999999999
Q ss_pred hcCCeeeeccccCChHHHHHHHhccCceEEEEcccchH---------HHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcc
Q 008389 92 MAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFK---------LAEEALKIMEEKSNGRFKPPLLIVIGDESCDPK 162 (567)
Q Consensus 92 ~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 162 (567)
++|++++|+++.++.+++..+++.++++++|++..... .+........ ........++..........
T Consensus 167 ~~Gav~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 243 (666)
T PLN02654 167 RIGAVHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESA---KNGVSVGICLTYENQLAMKR 243 (666)
T ss_pred HcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhcc---ccCCCccEEEEecccccccc
Confidence 99999999999999999999999999999999876432 1111111100 00001122222222110000
Q ss_pred cchhccCCChHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHH-HHHHHHHhccCCCcEEEE
Q 008389 163 DLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLM-SLSVALIWGMNEGAVYLW 241 (567)
Q Consensus 163 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~-~~~~~~~~~~~~~d~~~~ 241 (567)
............|++++..... .......+.+++++|+|||||||.||||+++|.+++.. .......++++++|++++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~~~~~~d~~~~ 322 (666)
T PLN02654 244 EDTKWQEGRDVWWQDVVPNYPT-KCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDYKPTDVYWC 322 (666)
T ss_pred cccccccCCcccHHHHhhcCCC-CCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhcCCCCCcEEEE
Confidence 0000000112335555533221 11222356789999999999999999999999997644 344556678999999999
Q ss_pred ecCccchhhhHHH-HHHhhhcCeeEEecc----CCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCC--CCcCCCCchhh
Q 008389 242 TLPMFHCNGWCYT-WSLAALCGTSICLRQ----VTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSE--DTILPLPHVVH 314 (567)
Q Consensus 242 ~~p~~~~~g~~~~-~~~~~~g~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~--~~~~~l~~lr~ 314 (567)
..|++|+.|..+. +..++.|++++++.. +++..+++.|+++++|+++++|++++.|.+.... ...+ +++||.
T Consensus 323 ~~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~-l~~Lr~ 401 (666)
T PLN02654 323 TADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEYVTRHS-RKSLRV 401 (666)
T ss_pred cCCchhhhhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCccccccCC-hhheeE
Confidence 9999999987654 455667887777743 5789999999999999999999999999976532 2233 789999
Q ss_pred hhccCCCCCHHHHHHHHh-cC---CeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCC
Q 008389 315 VNTAGAAPPPSVLHAMSQ-KG---FHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTR 390 (567)
Q Consensus 315 i~~~G~~l~~~~~~~~~~-~~---~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~ 390 (567)
++++|++++++..+++.+ ++ +++.+.||+||+++........ ......+++|.|++|+ .++|+|++
T Consensus 402 i~~~Ge~l~~~~~~~~~~~~g~~~~~i~~~yg~TE~g~~~~~~~~~---------~~~~~~gs~G~p~~g~-~v~i~d~~ 471 (666)
T PLN02654 402 LGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPG---------AWPQKPGSATFPFFGV-QPVIVDEK 471 (666)
T ss_pred EEEecCCCCHHHHHHHHHHhCCCCCceeccccccccCCeeeccCCC---------CCCCCCCccCCCCCCc-eEEEECCC
Confidence 999999999999998885 45 7899999999998765532210 0112347899999999 89999976
Q ss_pred CCCccCCCCCceEEEEEec--ccccccccCCCccchhcc---cCCccccCceEEEeCCCcEEEeccccceeeeCceecch
Q 008389 391 TQQPVPADGKTIGEIVMSG--NVVMKGYLKNPKANEETF---ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISS 465 (567)
Q Consensus 391 ~~~~~~~~~~~~Gei~v~~--~~~~~gy~~~~~~~~~~~---~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~ 465 (567)
|++++.+ +.|||++++ |.++.|||++++.+...+ .+|||+|||+|++|+||+++++||+||+||++|++|+|
T Consensus 472 -g~~~~~~--~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGD~~~~d~dG~l~i~GR~dd~I~~~G~ri~p 548 (666)
T PLN02654 472 -GKEIEGE--CSGYLCVKKSWPGAFRTLYGDHERYETTYFKPFAGYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGT 548 (666)
T ss_pred -CCCCCCC--CceEEEEcCCCchhhhhhcCChHHHHHhhhhcCCCEEEeCceEEECCCCcEEEeeeccCeEEeCCEEECH
Confidence 8888766 789999999 789999999998877665 27999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCceeeEEEEeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCC
Q 008389 466 VEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTAT 544 (567)
Q Consensus 466 ~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~ 544 (567)
.|||+++.++|.|.+++|++.+++..|+.++++|+++++. ..+ +++.++|+++++++|+.++.|+.|.+++ ||+|++
T Consensus 549 ~EIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vvl~~~~-~~~-~~l~~~l~~~~~~~L~~~~~P~~i~~v~~lP~T~s 626 (666)
T PLN02654 549 AEVESALVSHPQCAEAAVVGIEHEVKGQGIYAFVTLVEGV-PYS-EELRKSLILTVRNQIGAFAAPDKIHWAPGLPKTRS 626 (666)
T ss_pred HHHHHHHHhCCCeeeEEEEeeEcCCCCeEEEEEEEECCCC-CCC-HHHHHHHHHHHHHhCCCCcCCCEEEECCCCCCCCC
Confidence 9999999999999999999999999899999999999875 222 3455789999999999999999999988 999999
Q ss_pred ccccHHHHHHHHHHc
Q 008389 545 GKIQKHVLRAKAKEM 559 (567)
Q Consensus 545 GKi~r~~l~~~~~~~ 559 (567)
||++|+.|++.+.+.
T Consensus 627 GKi~r~~l~~~~~~~ 641 (666)
T PLN02654 627 GKIMRRILRKIASRQ 641 (666)
T ss_pred cCchHHHHHHHHcCC
Confidence 999999999998653
|
|
| >TIGR02316 propion_prpE propionate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-71 Score=588.37 Aligned_cols=520 Identities=21% Similarity=0.261 Sum_probs=415.9
Q ss_pred cCH-HHHHhhhhhcCCCceeEEEC------CccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhh
Q 008389 20 LTP-LWFLDRAATVHPTRTSVVHG------STRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPM 92 (567)
Q Consensus 20 ~t~-~~~l~~~a~~~p~~~a~~~~------~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~ 92 (567)
+++ .++|++++..+|+++|+++. .+++||+||++++.++|+.|++.|+++||+|+++++|++++++++|||++
T Consensus 51 ~n~~~~~l~~~~~~~p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e~v~~~lA~~~ 130 (628)
T TIGR02316 51 TNLCHNALDRHLDERGEQLALVTVSSETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACAR 130 (628)
T ss_pred eeHHHHHHHHHhCcCCCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence 444 47888888899999999972 36899999999999999999999999999999999999999999999999
Q ss_pred cCCeeeeccccCChHHHHHHHhccCceEEEEcccch---------HHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCccc
Q 008389 93 AGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYF---------KLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKD 163 (567)
Q Consensus 93 ~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 163 (567)
+|++++|+++.++.+++.++++.++++++|+++... +.+.+...... .....++.++.......
T Consensus 131 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~vi~~~~~~~~~~- 203 (628)
T TIGR02316 131 IGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQ------HPPPHVLLVDRGLAPMR- 203 (628)
T ss_pred hCCEEEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcC------CCCCEEEEEeCCCCCcC-
Confidence 999999999999999999999999999999976431 22222211111 12345666653211100
Q ss_pred chhccCCChHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHH-HHHHHHHhccCCCcEEEEe
Q 008389 164 LKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLM-SLSVALIWGMNEGAVYLWT 242 (567)
Q Consensus 164 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~-~~~~~~~~~~~~~d~~~~~ 242 (567)
........+.+++........+.....++++++|+|||||||.||||+++|.++... .......++++++|++++.
T Consensus 204 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~ 280 (628)
T TIGR02316 204 ---LIPGRDVDYAALRTQHEDAQVPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVMFSA 280 (628)
T ss_pred ---cccCccccHHHHhhccccCCCCceecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCcEEEEc
Confidence 011123456665544322211222246789999999999999999999999997644 3444556789999999999
Q ss_pred cCccchhhhHH-HHHHhhhcCeeEEec----cCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCC--CCcCCCCchhhh
Q 008389 243 LPMFHCNGWCY-TWSLAALCGTSICLR----QVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSE--DTILPLPHVVHV 315 (567)
Q Consensus 243 ~p~~~~~g~~~-~~~~~~~g~~~~~~~----~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~--~~~~~l~~lr~i 315 (567)
.|++|..|+.+ .+..++.|+++++.. .+++..+++.|+++++|+++++|++++.|.+.... ...+ +++||.+
T Consensus 281 ~~~~~~~g~~~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~-l~~lr~~ 359 (628)
T TIGR02316 281 SDVGWVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAWLRKHD-LSSLHWL 359 (628)
T ss_pred CCCCeeehhhHHHHHHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCC-ccceeEE
Confidence 99999998754 445566777777664 24789999999999999999999999999876432 2233 8899999
Q ss_pred hccCCCCCHHHHHHHHh-cCCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCc
Q 008389 316 NTAGAAPPPSVLHAMSQ-KGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQP 394 (567)
Q Consensus 316 ~~~G~~l~~~~~~~~~~-~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~ 394 (567)
++||+++++++.+++.+ ++.++++.||+||++..+........ ......+++|.|+|++ .++|+|+++|++
T Consensus 360 ~~gGe~l~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~-------~~~~~~gs~G~p~~g~-~v~i~d~~~g~~ 431 (628)
T TIGR02316 360 FLAGEPLDEPTAHWITDGLGKPVIDNYWQTETGWPVLAIMPGLD-------LKPVKLGSPGLPMYGY-HLRVLDEATGRP 431 (628)
T ss_pred EEecCCCCHHHHHHHHHHhCCCEEecccccccCceeecCCCCCC-------cCCCCCCCcccCcCCc-eEEEEECCCCCC
Confidence 99999999999999885 58999999999999754433211100 0112347889999999 899999977999
Q ss_pred cCCCCCceEEEEEecc---cccccccCCCccchhcc----cCCccccCceEEEeCCCcEEEeccccceeeeCceecchHH
Q 008389 395 VPADGKTIGEIVMSGN---VVMKGYLKNPKANEETF----ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVE 467 (567)
Q Consensus 395 ~~~~~~~~Gei~v~~~---~~~~gy~~~~~~~~~~~----~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~ 467 (567)
++.+ +.|||+++|| .++.|||++++.+...+ .++||+|||+|++|+||+++++||.||+||++|.+|+|.|
T Consensus 432 ~~~g--~~Gel~v~gp~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~dG~l~i~GR~dd~ik~~G~rv~~~e 509 (628)
T TIGR02316 432 CGPN--EKGVLTVVPPLPPGCLSTVWGDDARFLKTYWSHFKRPLYSSFDWGIRDEDGYTFILGRTDDVINVAGHRLGTRE 509 (628)
T ss_pred CCCC--CcEEEEEecCCCccccccccCChHHHHHhhhhcCCCCEEECCceEEEcCCCcEEEEEcCcceEEeCCEEeCHHH
Confidence 9888 7899999998 56789999887665543 5779999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCceeeEEEEeecCCCCCcceEEEEEcCCccc---hhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCC
Q 008389 468 VENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDK---SNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTA 543 (567)
Q Consensus 468 iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~---~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~ 543 (567)
||++|.++|+|.+++|++.+++..|+.++++|+++++... .+...+.++|+++++++|+.+++|+.|++++ ||+|+
T Consensus 510 IE~~l~~~p~V~ea~Vvg~~d~~~g~~~~~~vv~~~~~~~~~~~~~~~~~~~i~~~~~~~L~~~~~P~~v~~v~~lP~t~ 589 (628)
T TIGR02316 510 IEESVSSHPSVAEVAVVGVHDELKGQVAVVFAILKESDSAGDAHDPHAVETGMMDCVVRQLGAVARPARVYFVAALPKTR 589 (628)
T ss_pred HHHHHHhCCCcceEEEEeeecCCCCeEEEEEEEEcCCcccccccchHHHHHHHHHHHHHhcCCCcCCCEEEEcCCCCCCC
Confidence 9999999999999999999999989999999998876421 1223455789999999999999999999888 99999
Q ss_pred CccccHHHHHHHHHHcC
Q 008389 544 TGKIQKHVLRAKAKEMG 560 (567)
Q Consensus 544 ~GKi~r~~l~~~~~~~~ 560 (567)
+||++|+.|++.+....
T Consensus 590 sGKi~r~~L~~~~~~~~ 606 (628)
T TIGR02316 590 SGKLLRRSIQALAEGRD 606 (628)
T ss_pred chHHHHHHHHHHHcCCC
Confidence 99999999999876543
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. |
| >PLN02860 o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-70 Score=580.32 Aligned_cols=532 Identities=23% Similarity=0.269 Sum_probs=420.4
Q ss_pred hhcccCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCC
Q 008389 16 NYMALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGA 95 (567)
Q Consensus 16 ~~~~~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~ 95 (567)
+..+.|+.++|++.+.++|+++|+++.++++||+||.+++.++|+.|.+.|+++||+|+++++|++++++++|||+++|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v~~~n~~~~~~~~la~~~~Ga 82 (563)
T PLN02860 3 NHSQAHICQCLTRLATLRGNAVVTISGNRRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLLAVACAGG 82 (563)
T ss_pred chhhhHHHHHHHHHHHhcCCceEEecCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHhhccE
Confidence 34578999999999999999999999889999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHH
Q 008389 96 VLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEY 175 (567)
Q Consensus 96 ~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 175 (567)
+++|+++.++.+++.++++.+++++++++.+.......... . ........+.+++....... ........
T Consensus 83 v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~--~----~~~~~~~~i~~~~~~~~~~~----~~~~~~~~ 152 (563)
T PLN02860 83 IVAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQN--D----RLPSLMWQVFLESPSSSVFI----FLNSFLTT 152 (563)
T ss_pred EEEeCCcccCHHHHHHHHHhcCceEEEEecccchHHHHHhh--c----cCCceeEEEEecCccccccc----chhhcccc
Confidence 99999999999999999999999999998875333322210 0 00012223333321100000 00000111
Q ss_pred HHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhhHHHH
Q 008389 176 EKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTW 255 (567)
Q Consensus 176 ~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~ 255 (567)
+++...............++++++++|||||||.||+|.++|+++..+.......+++.++|+++...|++|.+|+...+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~ 232 (563)
T PLN02860 153 EMLKQRALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAL 232 (563)
T ss_pred chhccCccccccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCEEEEecCchhhccHHHHH
Confidence 11111100111111223568999999999999999999999999988777777778899999999999999999998888
Q ss_pred HHhhhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCC-cCCCCchhhhhccCCCCCHHHHHHHHhc-
Q 008389 256 SLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDT-ILPLPHVVHVNTAGAAPPPSVLHAMSQK- 333 (567)
Q Consensus 256 ~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~-~~~l~~lr~i~~~G~~l~~~~~~~~~~~- 333 (567)
..+..|+++++.+.+++..+++.|+++++|++.++|+++..|++...... ...++++|.+++||+++++++.+.+.+.
T Consensus 233 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~ 312 (563)
T PLN02860 233 AMLMVGACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMTWKVFPSVRKILNGGGSLSSRLLPDAKKLF 312 (563)
T ss_pred HHHHcCceEEecCCCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhhccccccceeEEEeCCCcCCHHHHHHHHHhc
Confidence 88889999998888999999999999999999999999999987543221 1227899999999999999999999864
Q ss_pred -CCeeeeccCCccCcCCcccccCCCCCCC-C-----------ChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCC
Q 008389 334 -GFHVTHTYGLSETYGPSTVCAWKPEWDS-L-----------PPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGK 400 (567)
Q Consensus 334 -~~~i~~~YG~tE~~~~~~~~~~~~~~~~-~-----------~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~ 400 (567)
++++++.||+||+++.++.......... . ..........++|.|+|++ +++|++++ .+
T Consensus 313 ~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~-~v~i~~~~------~g-- 383 (563)
T PLN02860 313 PNAKLFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHV-ELKIGLDE------SS-- 383 (563)
T ss_pred CCCceecCCCccccCcccccccccccccccchhhhhhhcccccccccccCCcccCCccCCc-EEEEecCC------CC--
Confidence 7899999999998765543222110000 0 0000011123689999999 89999865 23
Q ss_pred ceEEEEEecccccccccCCCccchhcc-cCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCce
Q 008389 401 TIGEIVMSGNVVMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVL 479 (567)
Q Consensus 401 ~~Gei~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~ 479 (567)
+.|||+++|+.++.|||++++.+...| .+|||+|||+|+++++|++++.||.+|+|+++|++|+|.+||+++.++|+|.
T Consensus 384 ~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~ 463 (563)
T PLN02860 384 RVGRILTRGPHVMLGYWGQNSETASVLSNDGWLDTGDIGWIDKAGNLWLIGRSNDRIKTGGENVYPEEVEAVLSQHPGVA 463 (563)
T ss_pred ceeEEEEecCcccccccCCccccchhccCCCeEEccceEEEcCCCCEEEeecccceeEECCEEccHHHHHHHHHhCCCcc
Confidence 789999999999999999999888877 5899999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEeecCCCCCcceEEEEEcCCccc---------hhhHHHHHHHHHHHHh-cCCCCCCCceeec-Cc-ccCCCCccc
Q 008389 480 EASVVARADERWGESPCAFVTLKPEVDK---------SNEQQLAEDIMKFCRA-KMPAYWVPKSIVF-GP-LPKTATGKI 547 (567)
Q Consensus 480 ~~~v~~~~~~~~g~~~~~~v~~~~~~~~---------~~~~~~~~~l~~~l~~-~l~~~~~p~~i~~-~~-lP~t~~GKi 547 (567)
+++|++.+++..|+.++++|+++++... .......+++++++++ +|+.|++|..+++ .+ ||+|++||+
T Consensus 464 ~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~~~~~~~~lP~t~~GKi 543 (563)
T PLN02860 464 SVVVVGVPDSRLTEMVVACVRLRDGWIWSDNEKENAKKNLTLSSETLRHHCREKNLSRFKIPKLFVQWRKPFPLTTTGKI 543 (563)
T ss_pred eeEEEEEecCcCCceEEEEEEECCccccccccchhhcccccccHHHHHHHHhhCcccccccceEEEEEecCCCCCcccch
Confidence 9999999999889999999998875210 0001112678889987 5999999998875 45 999999999
Q ss_pred cHHHHHHHHHHcCCccccC
Q 008389 548 QKHVLRAKAKEMGPVRKSK 566 (567)
Q Consensus 548 ~r~~l~~~~~~~~~~~~~~ 566 (567)
+|++|++++.+......|.
T Consensus 544 ~r~~L~~~~~~~~~~~~~~ 562 (563)
T PLN02860 544 RRDEVRREVLSHLQSLPSN 562 (563)
T ss_pred hHHHHHHHHHHHHhccccC
Confidence 9999999987765554443
|
|
| >PRK07529 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-69 Score=578.83 Aligned_cols=512 Identities=26% Similarity=0.375 Sum_probs=413.8
Q ss_pred ccCHHHHHhhhhhcCCCceeEEE--------CCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhh
Q 008389 19 ALTPLWFLDRAATVHPTRTSVVH--------GSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGV 90 (567)
Q Consensus 19 ~~t~~~~l~~~a~~~p~~~a~~~--------~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~ 90 (567)
+.|++++|++.++++|+++|+++ ..+++||+||.+++.++|+.|++.|+++||+|+++++|++++++++|||
T Consensus 24 ~~t~~~~l~~~a~~~p~~~Al~~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~~~n~~e~~~~~lA~ 103 (632)
T PRK07529 24 PASTYELLSRAAARHPDAPALSFLLDADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWGG 103 (632)
T ss_pred CCCHHHHHHHHHHHCCCCceEEeecccCCCCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence 45899999999999999999987 2479999999999999999999999999999999999999999999999
Q ss_pred hhcCCeeeeccccCChHHHHHHHhccCceEEEEcccch-----HHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcc--c
Q 008389 91 PMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYF-----KLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPK--D 163 (567)
Q Consensus 91 ~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~ 163 (567)
+++| +++|+++.++++++.++++.++++++|++.... +.+.......+ ....++.++....... .
T Consensus 104 ~~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~ 175 (632)
T PRK07529 104 EAAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAALP-------ELRTVVEVDLARYLPGPKR 175 (632)
T ss_pred HHhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHHHhcCC-------cceeEEEecCccccccccc
Confidence 9999 569999999999999999999999999986542 22222222221 3445555543211000 0
Q ss_pred chhc-----cCCChHHHHHHHhcCCCCC-CCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCc
Q 008389 164 LKYA-----LGRGAVEYEKFLQTGDPQF-DWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGA 237 (567)
Q Consensus 164 ~~~~-----~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d 237 (567)
.... .......+.+.+....... .......++++++++|||||||.||+|.+||+++..++......+++.+++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d 255 (632)
T PRK07529 176 LAVPLIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLGPGD 255 (632)
T ss_pred ccccccccccccccCCHHHHHhcCCCccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhcCCCCCC
Confidence 0000 1123345666665543221 112234678999999999999999999999999998887777778889999
Q ss_pred EEEEecCccchhhhHHHH-HHhhhcCeeEEeccC------CHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCC
Q 008389 238 VYLWTLPMFHCNGWCYTW-SLAALCGTSICLRQV------TAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLP 310 (567)
Q Consensus 238 ~~~~~~p~~~~~g~~~~~-~~~~~g~~~~~~~~~------~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~ 310 (567)
++++.+|++|.+++...+ ..+..|+++++..+. ....+++.++++++|++.++|+++..|++..... .. ++
T Consensus 256 ~~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~-~~-~~ 333 (632)
T PRK07529 256 TVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPVDG-HD-IS 333 (632)
T ss_pred EEEEecCchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccC-CC-cc
Confidence 999999999999987554 445566666665431 1368899999999999999999999999875432 23 88
Q ss_pred chhhhhccCCCCCHHHHHHHHh-cCCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEe--
Q 008389 311 HVVHVNTAGAAPPPSVLHAMSQ-KGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVI-- 387 (567)
Q Consensus 311 ~lr~i~~~G~~l~~~~~~~~~~-~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~-- 387 (567)
++|.+++||+++++++.+++++ +++++++.||+||++..+..+... .....+++|.|+|++ .++|+
T Consensus 334 slr~v~~gg~~l~~~l~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~----------~~~~~~svG~~~p~~-~v~i~~~ 402 (632)
T PRK07529 334 SLRYALCGAAPLPVEVFRRFEAATGVRIVEGYGLTEATCVSSVNPPD----------GERRIGSVGLRLPYQ-RVRVVIL 402 (632)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHhCCcEeeeecccccCcccccCCcc----------ccccCCCcccccCCc-eEEEEEc
Confidence 9999999999999999999985 599999999999997665443211 112347899999999 78885
Q ss_pred eCCCC---CccCCCCCceEEEEEecccccccccCCCccchhcccCCccccCceEEEeCCCcEEEeccccceeeeCceecc
Q 008389 388 DTRTQ---QPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENIS 464 (567)
Q Consensus 388 d~~~~---~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~ 464 (567)
|++ | ++++.| +.|||+++|+.++.||++++......+.+|||+|||+|++++||++++.||.+|+|+.+|.+|+
T Consensus 403 d~~-g~~~~~~~~g--~~Gel~v~gp~v~~GY~~~~~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~i~ 479 (632)
T PRK07529 403 DDA-GRYLRDCAVD--EVGVLCIAGPNVFSGYLEAAHNKGLWLEDGWLNTGDLGRIDADGYFWLTGRAKDLIIRGGHNID 479 (632)
T ss_pred CCC-CcccccCCCC--CceEEEEECCCccccccCCccccccccCCCceEcCcEEEEcCCceEEEEecccCEEEeCCEEEC
Confidence 444 5 678877 7899999999999999986554433337899999999999999999999999999999999999
Q ss_pred hHHHHHHHhcCCCceeeEEEEeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCC-CCCCceeecCc-ccCC
Q 008389 465 SVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPA-YWVPKSIVFGP-LPKT 542 (567)
Q Consensus 465 ~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~p~~i~~~~-lP~t 542 (567)
|.+||+.|.++|+|.+++|++.+++..|+.++++|++.++. ..+. +++++++++++++ +++|+.+.+++ ||+|
T Consensus 480 p~eIE~~l~~~p~V~~a~vvg~~d~~~ge~~~a~v~l~~~~-~~~~----~~l~~~~~~~l~~~~~~P~~i~~v~~lP~t 554 (632)
T PRK07529 480 PAAIEEALLRHPAVALAAAVGRPDAHAGELPVAYVQLKPGA-SATE----AELLAFARDHIAERAAVPKHVRILDALPKT 554 (632)
T ss_pred HHHHHHHHHhCCCeeEEEEEeccCCCCCceeEEEEEEcCCC-CCCH----HHHHHHHHHhcchhccCCcEEEEecCCCCC
Confidence 99999999999999999999999998899999999998876 4445 6788899999874 78999999888 9999
Q ss_pred CCccccHHHHHHHHHHc
Q 008389 543 ATGKIQKHVLRAKAKEM 559 (567)
Q Consensus 543 ~~GKi~r~~l~~~~~~~ 559 (567)
++||++|+.|++.+.+.
T Consensus 555 ~~GKi~r~~Lr~~~~~~ 571 (632)
T PRK07529 555 AVGKIFKPALRRDAIRR 571 (632)
T ss_pred CCCcccHHHHHHHHHHH
Confidence 99999999999987653
|
|
| >PLN02614 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-70 Score=587.06 Aligned_cols=517 Identities=20% Similarity=0.249 Sum_probs=397.6
Q ss_pred cCHHHHHhhhhhcCCCceeEEEC----C-----ccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhh
Q 008389 20 LTPLWFLDRAATVHPTRTSVVHG----S-----TRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGV 90 (567)
Q Consensus 20 ~t~~~~l~~~a~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~ 90 (567)
.|+.++|++.++++||++|+.+. + .++||+||+++++++|+.|.+.|+++||+|+|+++|+++|++++|||
T Consensus 45 ~t~~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~Gd~Vai~~~n~~e~~~~~lA~ 124 (666)
T PLN02614 45 DSCWDVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEAC 124 (666)
T ss_pred CcHHHHHHHHHHhCCCCCeEEEecccCCCCCCcEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 49999999999999999999842 1 35899999999999999999999999999999999999999999999
Q ss_pred hhcCCeeeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCC
Q 008389 91 PMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGR 170 (567)
Q Consensus 91 ~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 170 (567)
+++|++++|+++.++.+++.++++.++++++|++.+....+.. .++.. ......++.++.............+.
T Consensus 125 ~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~---~~~~~---~~~l~~vi~~~~~~~~~~~~~~~~~~ 198 (666)
T PLN02614 125 NAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELFK---TCPNS---TEYMKTVVSFGGVSREQKEEAETFGL 198 (666)
T ss_pred HHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHHHHHHHH---hcccc---cccceEEEEeCCCChHHhhhhhhcCc
Confidence 9999999999999999999999999999999998765433322 11100 00234555554321100000000011
Q ss_pred ChHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHh-----ccCCCcEEEEecCc
Q 008389 171 GAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIW-----GMNEGAVYLWTLPM 245 (567)
Q Consensus 171 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~-----~~~~~d~~~~~~p~ 245 (567)
...++++++..............++|+++|+|||||||.||||.+||+++...+......+ ++.++|++++.+|+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl 278 (666)
T PLN02614 199 VIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTVKDVYLSYLPL 278 (666)
T ss_pred EEEEHHHHHhhcccCCCCCCCCCCCceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhhccccccCCCCCcEEEEeccH
Confidence 1245666665432211112234578999999999999999999999999988876655443 57889999999999
Q ss_pred cchhhhHHHHHHhhhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCC----------------------
Q 008389 246 FHCNGWCYTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSE---------------------- 303 (567)
Q Consensus 246 ~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~---------------------- 303 (567)
+|.+++......+..|+++++. ..++..+++.|++++||+++++|++++.+.+....
T Consensus 279 ~H~~~~~~~~~~l~~G~~v~~~-~~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 357 (666)
T PLN02614 279 AHIFDRVIEECFIQHGAAIGFW-RGDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFG 357 (666)
T ss_pred HHHHHHHHHHHHHHhCCEEEEe-CCCHHHHHHHHHHhCCeEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 9999987655556677776665 46899999999999999999999999988642100
Q ss_pred -----------CC-----------cCCCCchhhhhccCCCCCHHHHHHHHhc-CCeeeeccCCccCcCCcccccCCCCCC
Q 008389 304 -----------DT-----------ILPLPHVVHVNTAGAAPPPSVLHAMSQK-GFHVTHTYGLSETYGPSTVCAWKPEWD 360 (567)
Q Consensus 304 -----------~~-----------~~~l~~lr~i~~~G~~l~~~~~~~~~~~-~~~i~~~YG~tE~~~~~~~~~~~~~~~ 360 (567)
.. ....+++|.+++||+++++++.++++.+ ++++++.||+||+++..+.....
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~---- 433 (666)
T PLN02614 358 NMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESCAGTFVSLPD---- 433 (666)
T ss_pred HHHcCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHHhcCCCEEeeCchHhhhhheeeeccc----
Confidence 00 0001578999999999998876555555 58999999999987544322110
Q ss_pred CCChhhhhhhhccCCceeccccceeEeeC-C-CCCccCCCCCceEEEEEecccccccccCCCccchhcccCCccccCceE
Q 008389 361 SLPPETQARMKARQGVRFIGLEKLDVIDT-R-TQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLG 438 (567)
Q Consensus 361 ~~~~~~~~~~~~~~G~~~~~~~~~~i~d~-~-~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~ 438 (567)
.....+++|.|+|++ +++|+|. + .+.+++.+ +.|||+++|++++.|||++++.+.+.|.+|||+|||+|
T Consensus 434 ------~~~~~gsvG~p~pg~-evki~d~~~~~~~~~~~g--~~GEl~vrGp~v~~GY~~~pe~T~~~f~dGw~~TGDlg 504 (666)
T PLN02614 434 ------ELDMLGTVGPPVPNV-DIRLESVPEMEYDALAST--PRGEICIRGKTLFSGYYKREDLTKEVLIDGWLHTGDVG 504 (666)
T ss_pred ------cCCcCCcccCcCCce-EEEEeeecccCcccCCCC--CCceEEEcCCcccccccCCHHHhhhhhccCCcccceEE
Confidence 011247899999999 8999983 3 24667776 78999999999999999999999999999999999999
Q ss_pred EEeCCCcEEEeccccceee-eCceecchHHHHHHHhcCCCceeeEEEEeecCCCCCcceEEEEEcCCcc-----------
Q 008389 439 VKHPDNYIEIKDRSKDIII-SGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVD----------- 506 (567)
Q Consensus 439 ~~~~~g~l~~~GR~~d~i~-~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~----------- 506 (567)
++|+||+|+++||.+|+|| .+|++|+|.+||+++.++|.|.+++|++..... .++|+|++..+.-
T Consensus 505 ~~d~dG~l~i~gR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~~~V~g~~~~~---~l~alvv~~~~~~~~~~~~~~~~~ 581 (666)
T PLN02614 505 EWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAVDSVWVYGNSFES---FLVAIANPNQQILERWAAENGVSG 581 (666)
T ss_pred EEcCCCCEEEEEcchhceecCCCeeecHHHHHHHHhcCCCeeEEEEEecCCcc---eEEEEEeCCHHHHHHHHHhcCCCc
Confidence 9999999999999999999 579999999999999999999999999987432 3889888765310
Q ss_pred c----hhhHHHHHHHHH----HH-HhcCCCCCCCceeecCccc-------CCCCccccHHHHHHHHHHc
Q 008389 507 K----SNEQQLAEDIMK----FC-RAKMPAYWVPKSIVFGPLP-------KTATGKIQKHVLRAKAKEM 559 (567)
Q Consensus 507 ~----~~~~~~~~~l~~----~l-~~~l~~~~~p~~i~~~~lP-------~t~~GKi~r~~l~~~~~~~ 559 (567)
. .+..++.+.+.+ .. ++.|+.+.+++.|.+.+-| .|+++|++|+.+.+.|++.
T Consensus 582 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~l~~~~f~~~ng~lTpt~K~kR~~i~~~y~~~ 650 (666)
T PLN02614 582 DYNALCQNEKAKEFILGELVKMAKEKKMKGFEIIKAIHLDPVPFDMERDLLTPTFKKKRPQLLKYYQSV 650 (666)
T ss_pred CHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCCcCCcCCHhhhhhHHHHHHHHHHH
Confidence 0 001122333333 33 3569999999999977633 8999999999999998764
|
|
| >PLN02736 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-70 Score=585.27 Aligned_cols=516 Identities=21% Similarity=0.235 Sum_probs=406.4
Q ss_pred ccCHHHHHhhhhhcCCCceeEEE---CC------ccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHh
Q 008389 19 ALTPLWFLDRAATVHPTRTSVVH---GS------TRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFG 89 (567)
Q Consensus 19 ~~t~~~~l~~~a~~~p~~~a~~~---~~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA 89 (567)
..|+.++|+++++++|+++|+.+ .+ +.+||+||.++++++|+.|.+.|+++||+|+|+++|+++|+++++|
T Consensus 43 ~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~lTy~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA 122 (651)
T PLN02736 43 IGTLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHA 122 (651)
T ss_pred CCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 46899999999999999999953 11 4699999999999999999999999999999999999999999999
Q ss_pred hhhcCCeeeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccC
Q 008389 90 VPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALG 169 (567)
Q Consensus 90 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 169 (567)
|+++|++++|+++.++.+++.++++.++++++|++.+..+.+......++ ..+.++.++.............+
T Consensus 123 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~~~~~~~~~~~-------~l~~ii~~~~~~~~~~~~~~~~~ 195 (651)
T PLN02736 123 CSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCLSEIP-------SVRLIVVVGGADEPLPSLPSGTG 195 (651)
T ss_pred HHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHHHHHHHhhcCC-------CceEEEEECCCchhhhhhhccCC
Confidence 99999999999999999999999999999999999877665554433222 34555555422110000000011
Q ss_pred CChHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchh
Q 008389 170 RGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCN 249 (567)
Q Consensus 170 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~ 249 (567)
.....+++++...........+..++++++|+|||||||.||||++||+++..++......+++.++|++++.+|++|.+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~ 275 (651)
T PLN02736 196 VEIVTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTKFYPSDVHISYLPLAHIY 275 (651)
T ss_pred cEEEEHHHHHHhcccCCCCCCCCCccceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhccCCCCCCEEEEeCCHHHHH
Confidence 12345666665443222222335678999999999999999999999999999988888888899999999999999999
Q ss_pred hhHHHHHHhhhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCC---------------------------
Q 008389 250 GWCYTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPS--------------------------- 302 (567)
Q Consensus 250 g~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~--------------------------- 302 (567)
++...+.++..|+++++.. .++..+++.|+++++|+++++|.+++.+.+...
T Consensus 276 ~~~~~~~~l~~G~~i~~~~-~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (651)
T PLN02736 276 ERVNQIVMLHYGVAVGFYQ-GDNLKLMDDLAALRPTIFCSVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQALEN 354 (651)
T ss_pred HHHHHHHHHHcCCEEEEeC-CCHHHHHHHHHHhCCcEEecchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHc
Confidence 9987777777787776654 488899999999999999999999988765310
Q ss_pred -CCC-------------cCCCCchhhhhccCCCCCHHHHHHHHh-cCCeeeeccCCccCcCCcccccCCCCCCCCChhhh
Q 008389 303 -EDT-------------ILPLPHVVHVNTAGAAPPPSVLHAMSQ-KGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQ 367 (567)
Q Consensus 303 -~~~-------------~~~l~~lr~i~~~G~~l~~~~~~~~~~-~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~ 367 (567)
... ....+++|.+++||+++++++.+++.+ +++++++.||+||+++.++.....
T Consensus 355 ~~~~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~~----------- 423 (651)
T PLN02736 355 GKNPSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFGGRVLEGYGMTETSCVISGMDEG----------- 423 (651)
T ss_pred CCCCCchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHhCCCeEEEechHHhchheeccCCC-----------
Confidence 000 000147899999999999999999984 589999999999997665543211
Q ss_pred hhhhccCCceeccccceeEeeCCCCCcc---CCCCCceEEEEEecccccccccCCCccchhcc-cCCccccCceEEEeCC
Q 008389 368 ARMKARQGVRFIGLEKLDVIDTRTQQPV---PADGKTIGEIVMSGNVVMKGYLKNPKANEETF-ANGWYHTGDLGVKHPD 443 (567)
Q Consensus 368 ~~~~~~~G~~~~~~~~~~i~d~~~~~~~---~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~ 443 (567)
....+++|.|+|++ +++|+|.+++... .++ +.|||+++||+++.|||++++.+.+.| .+|||+|||+|++++|
T Consensus 424 ~~~~~~vG~p~pg~-~v~i~d~~~~~~~~~~~~~--~~GEl~vrgp~v~~GY~~~~~~t~~~~~~dgw~~TGDlg~~d~d 500 (651)
T PLN02736 424 DNLSGHVGSPNPAC-EVKLVDVPEMNYTSEDQPY--PRGEICVRGPIIFKGYYKDEVQTREVIDEDGWLHTGDIGLWLPG 500 (651)
T ss_pred CCCCCccCCccCce-EEEEEEccccCcccCCCCC--CCceEEecCCccccccccCHHHHHhhhccCCCeeccceEEEcCC
Confidence 12347899999999 8999985433211 112 469999999999999999999999888 5899999999999999
Q ss_pred CcEEEeccccceeee-CceecchHHHHHHHhcCCCceeeEEEEeecCCCCCcceEEEEEcCCc----------cchhh--
Q 008389 444 NYIEIKDRSKDIIIS-GGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEV----------DKSNE-- 510 (567)
Q Consensus 444 g~l~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~----------~~~~~-- 510 (567)
|++++.||.+|+||+ +|++|+|.+||+++.++|.|.+|+|++. ..++.++|+|+++++. ...+.
T Consensus 501 G~l~i~GR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~---~~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~ 577 (651)
T PLN02736 501 GRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGD---SLNSSLVAVVVVDPEVLKAWAASEGIKYEDLKQ 577 (651)
T ss_pred CcEEEEEechhheEcCCCcEechHHHHHHHhcCCCeeEEEEEec---CCCceeEEEEEeCHHHHHHHHHHcCCCccCHHH
Confidence 999999999999995 7999999999999999999999999983 2467899999987531 10111
Q ss_pred ----HHHHHHHHHHHH-----hcCCCCCCCceeecCc-cc------CCCCccccHHHHHHHHHHc
Q 008389 511 ----QQLAEDIMKFCR-----AKMPAYWVPKSIVFGP-LP------KTATGKIQKHVLRAKAKEM 559 (567)
Q Consensus 511 ----~~~~~~l~~~l~-----~~l~~~~~p~~i~~~~-lP------~t~~GKi~r~~l~~~~~~~ 559 (567)
.++.+.+.+.+. ++|+.+++|+.|.+++ .| +|++||++|+.+++.|.+.
T Consensus 578 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lT~~~Ki~R~~i~~~~~~~ 642 (651)
T PLN02736 578 LCNDPRVRAAVLADMDAVGREAQLRGFEFAKAVTLVPEPFTVENGLLTPTFKVKRPQAKAYFAKA 642 (651)
T ss_pred HhcCHHHHHHHHHHHHHHHHhcCCCcceeeeEEEEeCCCCcCCCCcCChhhhhhHHHHHHHHHHH
Confidence 112222222222 2599999999999877 54 7999999999999998764
|
|
| >PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-69 Score=566.60 Aligned_cols=507 Identities=29% Similarity=0.433 Sum_probs=424.8
Q ss_pred chhhhcccCHHHHHhhhhhcCCCceeEEECC------ccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHH
Q 008389 13 NAANYMALTPLWFLDRAATVHPTRTSVVHGS------TRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEA 86 (567)
Q Consensus 13 ~~~~~~~~t~~~~l~~~a~~~p~~~a~~~~~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~ 86 (567)
....|++.|+.++|++.++.+|+++|+++.+ +++||.||+++++++|+.|.+.|+++||+|+++++|+++++++
T Consensus 17 ~~~~~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~~~n~~e~~~~ 96 (547)
T PRK13295 17 AAGHWHDRTINDDLDACVASCPDKTAVTAVRLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVL 96 (547)
T ss_pred cCCCCcCCCHHHHHHHHHHHCCCceEEEecCCCccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHH
Confidence 4556888999999999999999999999865 8999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCCeeeeccccCChHHHHHHHhccCceEEEEcccch-----HHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCc
Q 008389 87 HFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYF-----KLAEEALKIMEEKSNGRFKPPLLIVIGDESCDP 161 (567)
Q Consensus 87 ~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 161 (567)
+|||+++|++++|+++.++.+++.++++.+++++++++++.. +.+.+...... ....++.++...
T Consensus 97 ~la~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~--- 166 (547)
T PRK13295 97 YLACSRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARRLRPELP-------ALRHVVVVGGDG--- 166 (547)
T ss_pred HHHHHhcCcEEeccccccCHHHHHHHHHhcCceEEEEeccccCcchHHHHHHHhhhCC-------CcceEEEecCCC---
Confidence 999999999999999999999999999999999999987642 11222111111 334455444321
Q ss_pred ccchhccCCChHHHHHHHhcCC-------CCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccC
Q 008389 162 KDLKYALGRGAVEYEKFLQTGD-------PQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMN 234 (567)
Q Consensus 162 ~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~ 234 (567)
..++.+++.... +..........+++++++|||||||.||+|.++|+++..++......++++
T Consensus 167 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~ 236 (547)
T PRK13295 167 ----------ADSFEALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLG 236 (547)
T ss_pred ----------ccCHHHHhhCCccccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHhCCC
Confidence 112333332110 001111224568999999999999999999999999998888888888999
Q ss_pred CCcEEEEecCccchhhhHH-HHHHhhhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchh
Q 008389 235 EGAVYLWTLPMFHCNGWCY-TWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVV 313 (567)
Q Consensus 235 ~~d~~~~~~p~~~~~g~~~-~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr 313 (567)
+++++++..|++|..|+.. .+.++..|+++++...+++..+++.++++++|++.++|+++..+.......... ++++|
T Consensus 237 ~~~~~l~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~-~~~l~ 315 (547)
T PRK13295 237 ADDVILMASPMAHQTGFMYGLMMPVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKESGRP-VSSLR 315 (547)
T ss_pred CCCeEEEecCchhhhhHHHHHHHHHHcCCeEEeCCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccCCC-cccce
Confidence 9999999999999998765 455567788877777789999999999999999999999999998876554444 88999
Q ss_pred hhhccCCCCCHHHHHHHHh-cCCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCC
Q 008389 314 HVNTAGAAPPPSVLHAMSQ-KGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQ 392 (567)
Q Consensus 314 ~i~~~G~~l~~~~~~~~~~-~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~ 392 (567)
.+++||+++++++.+++.+ +++++++.||+||++.+.+.+.... .......+|.|++++ .++|+|++ +
T Consensus 316 ~~~~~G~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~---------~~~~~~~~G~~~~~~-~v~i~d~~-~ 384 (547)
T PRK13295 316 TFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAVTLTKLDDP---------DERASTTDGCPLPGV-EVRVVDAD-G 384 (547)
T ss_pred EEEEecCCCCHHHHHHHHHHhCCCeEEeccCCCCCCeeeccCCCc---------chhccCccccccCCc-EEEEECCC-C
Confidence 9999999999999999884 5899999999999976544332111 012235789999999 89999986 8
Q ss_pred CccCCCCCceEEEEEecccccccccCCCccchhcccCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHH
Q 008389 393 QPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMM 472 (567)
Q Consensus 393 ~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l 472 (567)
++++.| +.|||+++|+.++.||+++++.+... .+|||+|||+|+++++|++++.||.+|+|+.+|.+++|.+||+++
T Consensus 385 ~~~~~g--~~Gel~v~g~~~~~gY~~~~~~t~~~-~~g~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~~IE~~l 461 (547)
T PRK13295 385 APLPAG--QIGRLQVRGCSNFGGYLKRPQLNGTD-ADGWFDTGDLARIDADGYIRISGRSKDVIIRGGENIPVVEIEALL 461 (547)
T ss_pred CCCCCC--CCCeEEEEcCcccccccCCccccccC-CCCCeecceEEEEcCCceEEEEeccCCeEEECCEEECHHHHHHHH
Confidence 888888 78999999999999999998887765 688999999999999999999999999999999999999999999
Q ss_pred hcCCCceeeEEEEeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHh-cCCCCCCCceeecCc-ccCCCCccccHH
Q 008389 473 YLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRA-KMPAYWVPKSIVFGP-LPKTATGKIQKH 550 (567)
Q Consensus 473 ~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~i~~~~-lP~t~~GKi~r~ 550 (567)
.+++.|.+++|++.+++..|+.+++++++.++. ..+. +++.+++++ .++.+++|..+.+++ ||+|.+||++|+
T Consensus 462 ~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~-~~~~----~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~sgK~~r~ 536 (547)
T PRK13295 462 YRHPAIAQVAIVAYPDERLGERACAFVVPRPGQ-SLDF----EEMVEFLKAQKVAKQYIPERLVVRDALPRTPSGKIQKF 536 (547)
T ss_pred HhCCCeeeEEEEeeecCCCCcEEEEEEEeCCCC-CCCH----HHHHHHHHhccCccccCCcEEEEeccCCCCCCccccHH
Confidence 999999999999999988889999999987764 3344 578888886 799999999999888 999999999999
Q ss_pred HHHHHHHHc
Q 008389 551 VLRAKAKEM 559 (567)
Q Consensus 551 ~l~~~~~~~ 559 (567)
+|++++.+.
T Consensus 537 ~L~~~~~~~ 545 (547)
T PRK13295 537 RLREMLRGE 545 (547)
T ss_pred HHHHHHhcC
Confidence 999988764
|
|
| >TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-69 Score=577.22 Aligned_cols=510 Identities=23% Similarity=0.325 Sum_probs=413.0
Q ss_pred HHHHhhhhhcCCCceeEEECC------ccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCe
Q 008389 23 LWFLDRAATVHPTRTSVVHGS------TRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAV 96 (567)
Q Consensus 23 ~~~l~~~a~~~p~~~a~~~~~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~ 96 (567)
+++|++++..+|+++|+++.+ +++||+||++++.++|+.|++.|+++||+|+++++|++++++++|||+++|++
T Consensus 60 ~~~l~~~~~~~p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav 139 (625)
T TIGR02188 60 YNCVDRHLEARPDKVAIIWEGDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLACARIGAI 139 (625)
T ss_pred HHHHHHhhccCCCCeEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCE
Confidence 577888888899999999743 48999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccCChHHHHHHHhccCceEEEEcccch---------HHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhc
Q 008389 97 LNAVNIRLNAPTIAFLLGHSASAVIMVDQEYF---------KLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYA 167 (567)
Q Consensus 97 ~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 167 (567)
++|+++.++.+++.++++.++++++|+++... ..+.+.....+. ....++.+........ .
T Consensus 140 ~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~----~ 209 (625)
T TIGR02188 140 HSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPV------SVEHVLVVRRTGNPVP----W 209 (625)
T ss_pred EeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHHhCCC------CccEEEEEcCCCCCcC----c
Confidence 99999999999999999999999999987532 222222221110 1334554443211100 0
Q ss_pred cCCChHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHH-HHHHhccCCCcEEEEecCcc
Q 008389 168 LGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLS-VALIWGMNEGAVYLWTLPMF 246 (567)
Q Consensus 168 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~-~~~~~~~~~~d~~~~~~p~~ 246 (567)
.......+++++....... .......+++++|+|||||||.||+|+++|.+++..... ....++++++|++++..|++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 288 (625)
T TIGR02188 210 VEGRDVWWHDLMAKASAYC-EPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVFDIKDGDIFWCTADVG 288 (625)
T ss_pred cccccccHHHHHhhcCCCC-CceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhccCCCCCcEEEECCCch
Confidence 0112234566655432221 222356789999999999999999999999998755443 33456889999999999999
Q ss_pred chhhhHH-HHHHhhhcCeeEEecc----CCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCC--CcCCCCchhhhhccC
Q 008389 247 HCNGWCY-TWSLAALCGTSICLRQ----VTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSED--TILPLPHVVHVNTAG 319 (567)
Q Consensus 247 ~~~g~~~-~~~~~~~g~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~--~~~~l~~lr~i~~~G 319 (567)
|+.|..+ .+..+..|+++++... +++..+++.|+++++|++.++|++++.|.+..... ... ++++|.++++|
T Consensus 289 ~~~g~~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~-l~~lr~i~~~G 367 (625)
T TIGR02188 289 WITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEWVKKHD-LSSLRLLGSVG 367 (625)
T ss_pred hhhccHHHHHHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCC-ccceeEEEEec
Confidence 9988765 4445667777777642 47899999999999999999999999998764321 223 78999999999
Q ss_pred CCCCHHHHHHHHhc----CCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCcc
Q 008389 320 AAPPPSVLHAMSQK----GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPV 395 (567)
Q Consensus 320 ~~l~~~~~~~~~~~----~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~ 395 (567)
+++++++.+++.+. ++++++.||+||+++.+...... ......+++|.|++++ .++|+|++ |+++
T Consensus 368 ~~l~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~---------~~~~~~~~~G~p~~g~-~~~i~d~~-g~~~ 436 (625)
T TIGR02188 368 EPINPEAWMWYYKVVGKERCPIVDTWWQTETGGIMITPLPG---------ATPTKPGSATLPFFGI-EPAVVDEE-GNPV 436 (625)
T ss_pred CCCCHHHHHHHHHHcCCCCCceEecccccccCCceeecCCC---------CCCcCCCcccCCcCCc-eEEEECCC-CCCC
Confidence 99999999998854 37899999999998765433211 0112347899999999 89999965 8888
Q ss_pred C-CCCCceEEEEEec--ccccccccCCCccchhcc---cCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHH
Q 008389 396 P-ADGKTIGEIVMSG--NVVMKGYLKNPKANEETF---ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVE 469 (567)
Q Consensus 396 ~-~~~~~~Gei~v~~--~~~~~gy~~~~~~~~~~~---~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE 469 (567)
+ .+ +.|||++++ |+++.|||++++.+...+ .+|||+|||+|++++||++++.||+||+||++|++|+|.+||
T Consensus 437 ~~~g--~~GeL~v~~p~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE 514 (625)
T TIGR02188 437 EGPG--EGGYLVIKQPWPGMLRTIYGDHERFVDTYFSPFPGYYFTGDGARRDKDGYIWITGRVDDVINVSGHRLGTAEIE 514 (625)
T ss_pred CCCC--CeEEEEEccCCCcccccccCChHHHHHHHhccCCCEEECCceEEEcCCCcEEEEecccCEEEeCCEEECHHHHH
Confidence 8 66 789999999 589999999998776655 378999999999999999999999999999999999999999
Q ss_pred HHHhcCCCceeeEEEEeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCcccc
Q 008389 470 NMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQ 548 (567)
Q Consensus 470 ~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~ 548 (567)
++|.++|.|.+++|++.+++..|+.++++|+++++... .+++.++|+++++++|+.++.|+.|++++ ||+|++||++
T Consensus 515 ~~l~~~p~V~e~~vvg~~~~~~g~~~~a~vv~~~~~~~--~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~t~sGKi~ 592 (625)
T TIGR02188 515 SALVSHPAVAEAAVVGIPDDIKGQAIYAFVTLKDGYEP--DDELRKELRKHVRKEIGPIAKPDKIRFVPGLPKTRSGKIM 592 (625)
T ss_pred HHHHhCCCcceEEEEeeEcCCCCeEEEEEEEeCCCCCC--CHHHHHHHHHHHHhhcCCCccCcEEEECCCCCCCCCccch
Confidence 99999999999999999999889999999999887522 22345789999999999999999999888 9999999999
Q ss_pred HHHHHHHHHHc
Q 008389 549 KHVLRAKAKEM 559 (567)
Q Consensus 549 r~~l~~~~~~~ 559 (567)
|+.|++.+...
T Consensus 593 r~~l~~~~~~~ 603 (625)
T TIGR02188 593 RRLLRKIAAGE 603 (625)
T ss_pred HHHHHHHHcCC
Confidence 99999987654
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-69 Score=565.71 Aligned_cols=498 Identities=18% Similarity=0.213 Sum_probs=398.3
Q ss_pred hhcccCHHHHHhhhhhcCCCceeEEECC-ccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcC
Q 008389 16 NYMALTPLWFLDRAATVHPTRTSVVHGS-TRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAG 94 (567)
Q Consensus 16 ~~~~~t~~~~l~~~a~~~p~~~a~~~~~-~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G 94 (567)
.+...++.+.|.+.++++|+++|+.+.+ +++||+||.+++.++|+.|.+. +||+|+++++|++++++++|||+++|
T Consensus 15 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~Ty~el~~~~~~lA~~L~~~---~gd~Val~~~n~~e~~~~~lA~~~~G 91 (539)
T PRK06334 15 LRSGKTVLESFLKLCSEMTTATVCWDEQLGKLSYNQVRKAVIALATKVSKY---PDQHIGIMMPASAGAYIAYFATLLSG 91 (539)
T ss_pred cCcCCcHHHHHHHHHHhCCCceEEEeCCCCcccHHHHHHHHHHHHHHHhhc---cCCeEEEEcCCchHHHHHHHHHHhcC
Confidence 3456789999999999999999998866 7999999999999999999873 89999999999999999999999999
Q ss_pred CeeeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHH
Q 008389 95 AVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVE 174 (567)
Q Consensus 95 ~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 174 (567)
++++|+++.++.+++.++++.+++++++++.+....+.+....... ....++.+++... ...
T Consensus 92 ~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~------~~~~~i~~~~~~~------------~~~ 153 (539)
T PRK06334 92 KIPVMINWSQGLREVTACANLVGVTHVLTSKQLMQHLAQTHGEDAE------YPFSLIYMEEVRK------------ELS 153 (539)
T ss_pred CeeEecCcccchHHHHHHHHHcCCCEEEehHHHHHHHhhhhhcccc------ccccEEEEehhhh------------hcc
Confidence 9999999999999999999999999999987765554432111000 0112333322100 000
Q ss_pred HHHHHhc----CCCC-----CCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCc
Q 008389 175 YEKFLQT----GDPQ-----FDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPM 245 (567)
Q Consensus 175 ~~~~l~~----~~~~-----~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~ 245 (567)
+.+.+.. ..+. ........++++++++|||||||.||+|.+||+++..+.......++++.+|++++.+|+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~ 233 (539)
T PRK06334 154 FWEKCRIGIYMSIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKEDDVMMSFLPP 233 (539)
T ss_pred HHHhhhhhhhhcCCchhhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCCCceEEEecch
Confidence 0010000 0000 000123467899999999999999999999999999888777777889999999999999
Q ss_pred cchhhhHH-HHHHhhhcCeeEEec-cCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCC
Q 008389 246 FHCNGWCY-TWSLAALCGTSICLR-QVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPP 323 (567)
Q Consensus 246 ~~~~g~~~-~~~~~~~g~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~ 323 (567)
+|.+|+.. .+..+..|+++++.. .+++..+++.|+++++|++.++|+++..|++........ ++++|.+++||++++
T Consensus 234 ~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~i~~gG~~l~ 312 (539)
T PRK06334 234 FHAYGFNSCTLFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQESC-LPSLRFVVIGGDAFK 312 (539)
T ss_pred HhhhhhHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhcccc-cccccEEEECCccCC
Confidence 99999865 455566777776654 478999999999999999999999999998765444444 889999999999999
Q ss_pred HHHHHHHHhc--CCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCc
Q 008389 324 PSVLHAMSQK--GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKT 401 (567)
Q Consensus 324 ~~~~~~~~~~--~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~ 401 (567)
+++.+++.+. ++++++.||+||++.+++...... ......+|.|++++ +++|+|++++.+++.| +
T Consensus 313 ~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~----------~~~~~~vG~p~~g~-~v~i~d~~~~~~~~~g--~ 379 (539)
T PRK06334 313 DSLYQEALKTFPHIQLRQGYGTTECSPVITINTVNS----------PKHESCVGMPIRGM-DVLIVSEETKVPVSSG--E 379 (539)
T ss_pred HHHHHHHHHHCCCCeEEecccccccCceEEeccCCC----------CCCCCcCceecCCC-EEEEEcCCCCccCCCC--c
Confidence 9999999854 689999999999976655432110 11235689999999 8999998878999988 8
Q ss_pred eEEEEEecccccccccCCCccchhcc--cCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCce
Q 008389 402 IGEIVMSGNVVMKGYLKNPKANEETF--ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVL 479 (567)
Q Consensus 402 ~Gei~v~~~~~~~gy~~~~~~~~~~~--~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~ 479 (567)
.|||+++|+.++.||+++++.+.... .+|||+|||+|+++++|++++.||.+|+||++|++|+|.|||++|.++|+|.
T Consensus 380 ~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~w~~TGD~g~~d~~G~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~~~v~ 459 (539)
T PRK06334 380 TGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTGDLGYVDRHGELFLKGRLSRFVKIGAEMVSLEALESILMEGFGQN 459 (539)
T ss_pred eEEEEEecCcccccccCCcccccceeeCCceeEECCCEEEECCCCeEEEEeccCCeEEECCEEECHHHHHHHHHHccCCc
Confidence 89999999999999999988644322 3679999999999999999999999999999999999999999999999998
Q ss_pred e------eEEEEeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhc-CCCCCCCceeecCc-ccCCCCccccHHH
Q 008389 480 E------ASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAK-MPAYWVPKSIVFGP-LPKTATGKIQKHV 551 (567)
Q Consensus 480 ~------~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~-l~~~~~p~~i~~~~-lP~t~~GKi~r~~ 551 (567)
+ ++|++.+++. ..++++++. . .+. ++++++++++ ++.|+.|..+.+++ ||+|++||++|+.
T Consensus 460 ~~~~~~~~~v~~~~~~~--~~~~~~~~~--~---~~~----~~~~~~l~~~~~~~~~~P~~i~~v~~lP~t~~GKi~r~~ 528 (539)
T PRK06334 460 AADHAGPLVVCGLPGEK--VRLCLFTTF--P---TSI----SEVNDILKNSKTSSILKISYHHQVESIPMLGTGKPDYCS 528 (539)
T ss_pred cccccCceEEEcCCCCc--eEEEEEEec--c---CCh----HHHHHHHHhcCCcccccchheeeecccccccCCcccHHH
Confidence 7 6777776432 234444442 1 122 5678888886 78999999998888 9999999999999
Q ss_pred HHHHHHHc
Q 008389 552 LRAKAKEM 559 (567)
Q Consensus 552 l~~~~~~~ 559 (567)
|++.....
T Consensus 529 L~~~~~~~ 536 (539)
T PRK06334 529 LNALAKSL 536 (539)
T ss_pred HHHHHHHh
Confidence 99987654
|
|
| >PRK00174 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-69 Score=574.83 Aligned_cols=510 Identities=23% Similarity=0.322 Sum_probs=412.7
Q ss_pred HHHHhhhhhcCCCceeEEECC------ccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCe
Q 008389 23 LWFLDRAATVHPTRTSVVHGS------TRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAV 96 (567)
Q Consensus 23 ~~~l~~~a~~~p~~~a~~~~~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~ 96 (567)
.++|+++++++|+++|+++.+ +++||+||++++.++|+.|++.|+++||+|+++++|++++++++|||+++|++
T Consensus 70 ~~~l~~~~~~~p~~~Al~~~~~~~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav 149 (637)
T PRK00174 70 YNCLDRHLKTRGDKVAIIWEGDDPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLACARIGAV 149 (637)
T ss_pred HHHHHHhhccCCCCeEEEEECCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCE
Confidence 467888888999999999743 47999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccCChHHHHHHHhccCceEEEEcccch---------HHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhc
Q 008389 97 LNAVNIRLNAPTIAFLLGHSASAVIMVDQEYF---------KLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYA 167 (567)
Q Consensus 97 ~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 167 (567)
++|+++.++.+++.++++.++++++|+++... +.+.+.....+ ....++.+........ .
T Consensus 150 ~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~----~ 218 (637)
T PRK00174 150 HSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEALANCP-------SVEKVIVVRRTGGDVD----W 218 (637)
T ss_pred EEecCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHHHhCC-------CccEEEEEcCCCCCcC----c
Confidence 99999999999999999999999999976542 22222222111 3344555543211100 0
Q ss_pred cCCChHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHH-HHHHhccCCCcEEEEecCcc
Q 008389 168 LGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLS-VALIWGMNEGAVYLWTLPMF 246 (567)
Q Consensus 168 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~-~~~~~~~~~~d~~~~~~p~~ 246 (567)
.......+.+++...... ........+++++|+|||||||.||+|.++|++++.+... ....++++++|++++..|++
T Consensus 219 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 297 (637)
T PRK00174 219 VEGRDLWWHELVAGASDE-CEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVFDYKDGDVYWCTADVG 297 (637)
T ss_pred CCCCcccHHHHHhhcCCC-CCccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhccCCCCCcEEEEcCCch
Confidence 011233456655433221 2223356789999999999999999999999998765443 33446888999999999999
Q ss_pred chhhhHH-HHHHhhhcCeeEEecc----CCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCC-CcCCCCchhhhhccCC
Q 008389 247 HCNGWCY-TWSLAALCGTSICLRQ----VTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSED-TILPLPHVVHVNTAGA 320 (567)
Q Consensus 247 ~~~g~~~-~~~~~~~g~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~-~~~~l~~lr~i~~~G~ 320 (567)
|..++.+ .+.++..|+++++... +++..+++.|+++++|++.++|++++.|++..... ....+++||.++++|+
T Consensus 298 ~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~Ge 377 (637)
T PRK00174 298 WVTGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEHPKKYDLSSLRLLGSVGE 377 (637)
T ss_pred HhhhhHHHHHHHHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCcccccCCccceeEEEEeCC
Confidence 9988764 4445667777777642 47899999999999999999999999998764321 1122789999999999
Q ss_pred CCCHHHHHHHHhc-C---CeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccC
Q 008389 321 APPPSVLHAMSQK-G---FHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVP 396 (567)
Q Consensus 321 ~l~~~~~~~~~~~-~---~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~ 396 (567)
+++++..+++.+. + +++++.||+||+++.+....... .....+++|.|++++ .++|+|++ |++++
T Consensus 378 ~l~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~---------~~~~~~~vG~p~~g~-~~~i~d~~-g~~~~ 446 (637)
T PRK00174 378 PINPEAWEWYYKVVGGERCPIVDTWWQTETGGIMITPLPGA---------TPLKPGSATRPLPGI-QPAVVDEE-GNPLE 446 (637)
T ss_pred CCCHHHHHHHHHHhCCCCCceEecccccccCCceEecCCCC---------CCcCCCcccCCCCCc-eEEEECCC-CCCCC
Confidence 9999999988753 3 78999999999987654322110 011236799999999 89999976 88998
Q ss_pred CCCCceEEEEEec--ccccccccCCCccchhcc---cCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHH
Q 008389 397 ADGKTIGEIVMSG--NVVMKGYLKNPKANEETF---ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENM 471 (567)
Q Consensus 397 ~~~~~~Gei~v~~--~~~~~gy~~~~~~~~~~~---~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~ 471 (567)
.+ +.|||+++| +.++.|||++++.+...+ .+|||+|||+|++++||++++.||.||+||++|++|+|.+||++
T Consensus 447 ~g--~~Gel~v~g~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~ 524 (637)
T PRK00174 447 GG--EGGNLVIKDPWPGMMRTIYGDHERFVKTYFSTFKGMYFTGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESA 524 (637)
T ss_pred CC--CcEEEEEcCCCCcccccccCCHHHHHHhhhcCCCCEEECCceEEEcCCCcEEEEEecccEEEeCCEEECHHHHHHH
Confidence 87 789999999 689999999998776655 47899999999999999999999999999999999999999999
Q ss_pred HhcCCCceeeEEEEeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHH
Q 008389 472 MYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKH 550 (567)
Q Consensus 472 l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~ 550 (567)
|.++|+|.+++|++.+++..|+.++++|++.++.. .+ +++.++|+++++++|+.++.|..+.+++ ||+|++||++|+
T Consensus 525 l~~~~~V~~~~Vvg~~~~~~g~~~~a~vv~~~~~~-~~-~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~ 602 (637)
T PRK00174 525 LVAHPKVAEAAVVGRPDDIKGQGIYAFVTLKGGEE-PS-DELRKELRNWVRKEIGPIAKPDVIQFAPGLPKTRSGKIMRR 602 (637)
T ss_pred HHhCCCcceEEEEeeEcCCCCeEEEEEEEECCCCC-CC-HHHHHHHHHHHHhhcCCccCCCEEEEcCCCCCCCCcchHHH
Confidence 99999999999999999988999999999987752 22 3344789999999999999999999888 999999999999
Q ss_pred HHHHHHHHc
Q 008389 551 VLRAKAKEM 559 (567)
Q Consensus 551 ~l~~~~~~~ 559 (567)
.|++.....
T Consensus 603 ~L~~~~~~~ 611 (637)
T PRK00174 603 ILRKIAEGE 611 (637)
T ss_pred HHHHHHcCC
Confidence 999987654
|
|
| >PRK13382 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-68 Score=561.96 Aligned_cols=491 Identities=25% Similarity=0.365 Sum_probs=414.6
Q ss_pred ccCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCeee
Q 008389 19 ALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLN 98 (567)
Q Consensus 19 ~~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v 98 (567)
++++.++|.++++++|+++|+++.++++||+||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|++++
T Consensus 42 ~~~~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 121 (537)
T PRK13382 42 GMGPTSGFAIAAQRCPDRPGLIDELGTLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAANRIGADIL 121 (537)
T ss_pred cCCHHHHHHHHHHhCCCCeEEEeCCCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCcHHHHHHHHHHHHcCcEEE
Confidence 47899999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHHHHH
Q 008389 99 AVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKF 178 (567)
Q Consensus 99 ~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (567)
|+++.++.+++.++++.++++++|++.+....+........ ....++.+.... ....++.+
T Consensus 122 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~------------~~~~~~~~ 182 (537)
T PRK13382 122 LLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALADCP-------QATRIVAWTDED------------HDLTVEVL 182 (537)
T ss_pred ecCcccCHHHHHHHHHhcCCCEEEEchhhHHHHHHHHhhcc-------ccceEEEecCCc------------ccccHHHH
Confidence 99999999999999999999999999877655443322111 122233332211 01233333
Q ss_pred HhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhhHHHHHHh
Q 008389 179 LQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLA 258 (567)
Q Consensus 179 l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~ 258 (567)
....... ......++.++++|||||||.||+|.++|+++..........+.+..+++++...|++|.+|+...+..+
T Consensus 183 ~~~~~~~---~~~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l 259 (537)
T PRK13382 183 IAAHAGQ---RPEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRTPWRAEEPTVIVAPMFHAWGFSQLVLAA 259 (537)
T ss_pred hhccCcC---CCCCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhhCCCCCCeEEEecChHhhhHHHHHHHHH
Confidence 3322111 1123457889999999999999999999999888877777778888999999999999999998778888
Q ss_pred hhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCC--CCcCCCCchhhhhccCCCCCHHHHHHHHh-cCC
Q 008389 259 ALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSE--DTILPLPHVVHVNTAGAAPPPSVLHAMSQ-KGF 335 (567)
Q Consensus 259 ~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~--~~~~~l~~lr~i~~~G~~l~~~~~~~~~~-~~~ 335 (567)
..|+++++...+++..+++.|+++++|++.++|++++.+++.... .... ++++|.+++||+++++++.+.+.+ ++.
T Consensus 260 ~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~-~~~lr~i~~gG~~l~~~~~~~~~~~~~~ 338 (537)
T PRK13382 260 SLACTIVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVRNRYS-GRSLRFAAASGSRMRPDVVIAFMDQFGD 338 (537)
T ss_pred hcCcEEEECCCcCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCchhcccCC-ccceeEEEEcCCCCCHHHHHHHHHHcCC
Confidence 888888887788999999999999999999999999999876432 1222 578999999999999999999885 588
Q ss_pred eeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEeccccccc
Q 008389 336 HVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKG 415 (567)
Q Consensus 336 ~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~~g 415 (567)
++++.||+||++.+++.+.. ......+++|.|++++ .++|+|++ +++++.| +.|||+++|+.++.|
T Consensus 339 ~i~~~YG~TE~~~~~~~~~~----------~~~~~~~~vG~p~~~~-~~~i~d~~-~~~~~~g--~~GEl~v~g~~~~~g 404 (537)
T PRK13382 339 VIYNNYNATEAGMIATATPA----------DLRAAPDTAGRPAEGT-EIRILDQD-FREVPTG--EVGTIFVRNDTQFDG 404 (537)
T ss_pred cEEecccccccCcceecChh----------HhccCCCCccccCcCc-EEEEECCC-CCCCCCC--CeeEEEEEcCCcccC
Confidence 99999999999866553321 1112346899999999 89999987 8888888 789999999999999
Q ss_pred ccCCCccchhcccCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeecCCCCCcc
Q 008389 416 YLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESP 495 (567)
Q Consensus 416 y~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~ 495 (567)
|+ ++.+. .|.+|||+|||+++++++|++++.||.+|+|+.+|++|+|.+||..+.++|+|.+++|++.++...|+.+
T Consensus 405 Y~--~~~~~-~~~~g~~~TGDl~~~~~~g~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~ 481 (537)
T PRK13382 405 YT--SGSTK-DFHDGFMASGDVGYLDENGRLFVVGRDDEMIVSGGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRL 481 (537)
T ss_pred cc--ccchh-hccCCCEeeCceEEEeCCCcEEEeccccceeEECCEEECHHHHHHHHHhCCCEeeEEEEccCccccCCEE
Confidence 98 44433 4568999999999999999999999999999999999999999999999999999999999998888999
Q ss_pred eEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHH
Q 008389 496 CAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRA 554 (567)
Q Consensus 496 ~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~ 554 (567)
+++|++.++. ..+. ++++++++++|+.+++|..+.+++ +|+|++||++|++|++
T Consensus 482 ~a~vv~~~~~-~~~~----~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~gK~~r~~L~~ 536 (537)
T PRK13382 482 AAFVVLKPGA-SATP----ETLKQHVRDNLANYKVPRDIVVLDELPRGATGKILRRELQA 536 (537)
T ss_pred EEEEEECCCC-CCCH----HHHHHHHHHhccCCCCCcEEEEeccCCCCCCCCCcHHhhCC
Confidence 9999987765 3344 678999999999999999999887 9999999999999864
|
|
| >PRK08162 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-68 Score=560.04 Aligned_cols=539 Identities=59% Similarity=1.039 Sum_probs=442.2
Q ss_pred ccccccchhhhcccCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHH
Q 008389 7 IDDLPKNAANYMALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEA 86 (567)
Q Consensus 7 ~~~~~~~~~~~~~~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~ 86 (567)
+..+.....+.-++++.++|++.++.+|+++|+.+.+..+||+||.+++.++|..|.+.|+++||+|+++++|+++++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~ 84 (545)
T PRK08162 5 EQGLDRNAANYVPLTPLSFLERAAEVYPDRPAVIHGDRRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEA 84 (545)
T ss_pred hcccCccccccccCCHHHHHHHHHHHCCCCeEEEECCeEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHH
Confidence 33444555556678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCCeeeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchh
Q 008389 87 HFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKY 166 (567)
Q Consensus 87 ~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 166 (567)
+|||+++|++++|+++.++.+++.++++.++++.++++.+..+.+.+.....+ ...++.+........ .
T Consensus 85 ~lA~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~---~ 153 (545)
T PRK08162 85 HFGVPMAGAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALALLP--------GPKPLVIDVDDPEYP---G 153 (545)
T ss_pred HHHHHHhCcEEeccccccChHHHHHHHHhCCCeEEEEccchhhHHHHHHhhCC--------CCceEEEecCccccc---c
Confidence 99999999999999999999999999999999999999988776655433222 122233322111000 0
Q ss_pred ccCCChHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCcc
Q 008389 167 ALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMF 246 (567)
Q Consensus 167 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~ 246 (567)
....+..+++.++....+...+..+.+.+++++++|||||||.||+|.++|+++...+......+.+..++++++.+|++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~ 233 (545)
T PRK08162 154 GRFIGALDYEAFLASGDPDFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWGMPKHPVYLWTLPMF 233 (545)
T ss_pred CCCcccccHHHHhccCCccccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeeEeccCcH
Confidence 01123345666665544333333334556899999999999999999999999877766666667788899999999999
Q ss_pred chhhhHHHHHHhhhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHH
Q 008389 247 HCNGWCYTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSV 326 (567)
Q Consensus 247 ~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~ 326 (567)
|.+++...+...+.+++.++...+++..+++.++++++|++.++|+++..|++........ +...+.++++|+.+++..
T Consensus 234 h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~~~~~~~~g~~~~~~~ 312 (545)
T PRK08162 234 HCNGWCFPWTVAARAGTNVCLRKVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEWRAG-IDHPVHAMVAGAAPPAAV 312 (545)
T ss_pred hhhhHHHHHHHHHHccEEEEeCCCCHHHHHHHHHHcCCeEEEechHHHHHHHhCccccccC-CccceEEEECCCCCCHHH
Confidence 9999987777777888888888889999999999999999999999999999765443323 556667789999999999
Q ss_pred HHHHHhcCCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEE
Q 008389 327 LHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIV 406 (567)
Q Consensus 327 ~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~ 406 (567)
.+.+.+.++++++.||+||+++.+..+.....+...+...........|.+.+....+.|+|++++.+++.++.+.|||+
T Consensus 313 ~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~g~~~Gel~ 392 (545)
T PRK08162 313 IAKMEEIGFDLTHVYGLTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVLDPDTMQPVPADGETIGEIM 392 (545)
T ss_pred HHHHHHhCCceeecccccccCcceeecccccccccCCccchhhccCCCCcccCCcceEEEEcCCCCcccCCCCCceeEEE
Confidence 99998889999999999999777666544333332222222222355677766554688999877888887554679999
Q ss_pred EecccccccccCCCccchhcccCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEe
Q 008389 407 MSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVAR 486 (567)
Q Consensus 407 v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~ 486 (567)
++|+.++.||+++++.+...|.+|||+|||+|+++++|.+++.||.+|+++++|.+|+|.+||..|.++++|.+++|++.
T Consensus 393 v~g~~~~~gY~~~~~~~~~~~~~g~~~TGDl~~~d~dg~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~ 472 (545)
T PRK08162 393 FRGNIVMKGYLKNPKATEEAFAGGWFHTGDLAVLHPDGYIKIKDRSKDIIISGGENISSIEVEDVLYRHPAVLVAAVVAK 472 (545)
T ss_pred EecCcchhhhcCChhhhHHHhhCCCcccCceEEEcCCccEEEEecccceEEeCCEEECHHHHHHHHHhCCcccEEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCcccCCCCccccHHHHHHHHHHcCCc
Q 008389 487 ADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGPLPKTATGKIQKHVLRAKAKEMGPV 562 (567)
Q Consensus 487 ~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~lP~t~~GKi~r~~l~~~~~~~~~~ 562 (567)
+++..++.+++++++.++. ..+. +++++++++.|+.+.+|..+.+.++|+|++||++|+.|++++.++...
T Consensus 473 ~~~~~~~~~~~~v~~~~~~-~~~~----~~l~~~~~~~l~~~~~P~~~~~~~iP~t~~gK~~r~~l~~~~~~l~~~ 543 (545)
T PRK08162 473 PDPKWGEVPCAFVELKDGA-SATE----EEIIAHCREHLAGFKVPKAVVFGELPKTSTGKIQKFVLREQAKSLKAI 543 (545)
T ss_pred eccccCceEEEEEEeCCCC-CCCH----HHHHHHHHHhcccccCCcEEEecccCCCCCcCCcHHHHHHHHhhhhhh
Confidence 9887788899999988765 3344 688999999999999999998767999999999999999998877543
|
|
| >PRK08314 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-68 Score=563.03 Aligned_cols=516 Identities=28% Similarity=0.397 Sum_probs=430.5
Q ss_pred hhhcccCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHc-cCCCCCEEEEEcCChHHHHHHHHhhhhc
Q 008389 15 ANYMALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKR-SIGLGCTVAIIAPNIPAIYEAHFGVPMA 93 (567)
Q Consensus 15 ~~~~~~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~-g~~~gd~V~l~~~~~~~~~~~~lA~~~~ 93 (567)
+..|..|+.++|.+.++++|+++|+++.++++||+||.+++.++|..|.+. |+++||+|+++++|++++++++|||+++
T Consensus 5 ~~~~~~tl~~~l~~~a~~~~~~~a~~~~~~~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~ 84 (546)
T PRK08314 5 LTLPETSLFHNLEVSARRYPDKTAIVFYGRAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRA 84 (546)
T ss_pred CCCCCCCHHHHHHHHHHHcCCCcceeecCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCChHHHHHHHHHHHc
Confidence 346678999999999999999999999999999999999999999999998 9999999999999999999999999999
Q ss_pred CCeeeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcc-----------
Q 008389 94 GAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPK----------- 162 (567)
Q Consensus 94 G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----------- 162 (567)
|++++|+++..+.+++.++++.+++++++++.+....+......+ ....++..........
T Consensus 85 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (546)
T PRK08314 85 NAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNL--------RLRHVIVAQYSDYLPAEPEIAVPAWLR 156 (546)
T ss_pred CcEEeecCcCcCHHHHHHHHHhCCCeEEEEccchhhhHHHHhhcc--------CcceEEEecchhhcccccccCcccccc
Confidence 999999999999999999999999999999988766554432211 1222322211000000
Q ss_pred ---cchhccCCChHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEE
Q 008389 163 ---DLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVY 239 (567)
Q Consensus 163 ---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~ 239 (567)
........+...+++.+..... ........+++++++|||||||.||+|.++|++++.++......++++.+|++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~ 234 (546)
T PRK08314 157 AEPPLQALAPGGVVAWKEALAAGLA--PPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNSTPESVV 234 (546)
T ss_pred cccccccccccccccHHHHhcccCC--CCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCceE
Confidence 0000011233456665543221 12233567899999999999999999999999999988888888889999999
Q ss_pred EEecCccchhhhHHHH-HHhhhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhcc
Q 008389 240 LWTLPMFHCNGWCYTW-SLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTA 318 (567)
Q Consensus 240 ~~~~p~~~~~g~~~~~-~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~ 318 (567)
++.+|++|.+|+...+ .++..|+++++.+.+++..+++.++++++|++.++|+++..++......... ++++|.+++|
T Consensus 235 l~~~p~~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~~~~~~-~~~l~~~~~g 313 (546)
T PRK08314 235 LAVLPLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDFLASPGLAERD-LSSLRYIGGG 313 (546)
T ss_pred EEEcCchHHHHHHHHHHHHHHcCCeEEecCCCCHHHHHHHHHHhcCceecccHHHHHHHHhCCCccccC-chhhheeeec
Confidence 9999999999986544 5567788888888889999999999999999999999999998765444444 7899999999
Q ss_pred CCCCCHHHHHHHHh-cCCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCC
Q 008389 319 GAAPPPSVLHAMSQ-KGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPA 397 (567)
Q Consensus 319 G~~l~~~~~~~~~~-~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~ 397 (567)
|+++++++.+++.+ ++.++++.||+||++......... ......+|.|++++ .++|+|++++.+++.
T Consensus 314 G~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~-----------~~~~~~~G~~~~g~-~~~i~d~~~~~~~~~ 381 (546)
T PRK08314 314 GAAMPEAVAERLKELTGLDYVEGYGLTETMAQTHSNPPD-----------RPKLQCLGIPTFGV-DARVIDPETLEELPP 381 (546)
T ss_pred cccCCHHHHHHHHHHcCCcEEecccccccccceecCCCc-----------CCCCCccCcccCCe-EEEEEeCCCCcCCCC
Confidence 99999999999885 589999999999997655432210 11236789999999 899999888999998
Q ss_pred CCCceEEEEEecccccccccCCCccchhccc----CCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHh
Q 008389 398 DGKTIGEIVMSGNVVMKGYLKNPKANEETFA----NGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMY 473 (567)
Q Consensus 398 ~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~----~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~ 473 (567)
+ +.|||+++|++++.||+++++.+...|. ++||+|||+|+++++|.+++.||.||+|+++|.+|+|.+||+++.
T Consensus 382 g--~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~i~ 459 (546)
T PRK08314 382 G--EVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTGDLGRMDEEGYFFITDRLKRMINASGFKVWPAEVENLLY 459 (546)
T ss_pred C--CceEEEEECCchhccccCChhHhhhhhhhcCCCceEecCCEEEEcCCCcEEEEecchhhEEeCCEEECHHHHHHHHH
Confidence 8 7899999999999999999988887763 359999999999999999999999999999999999999999999
Q ss_pred cCCCceeeEEEEeecCCCCCcceEEEEEcCCcc-chhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHH
Q 008389 474 LHPAVLEASVVARADERWGESPCAFVTLKPEVD-KSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHV 551 (567)
Q Consensus 474 ~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~-~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~ 551 (567)
++++|.+++|++.++...++.++++++..++.. ..+. ++++++++++|+.+++|..+++++ ||+|++||++|+.
T Consensus 460 ~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~----~~l~~~~~~~l~~~~~P~~~~~v~~iP~t~~GKv~r~~ 535 (546)
T PRK08314 460 KHPAIQEACVIATPDPRRGETVKAVVVLRPEARGKTTE----EEIIAWAREHMAAYKYPRIVEFVDSLPKSGSGKILWRQ 535 (546)
T ss_pred hCcchheEEEEeCCCcccCceeEEEEEECCCCCCCCCH----HHHHHHHHHhcccCCCCcEEEEecCCCCCCccceeHHH
Confidence 999999999999999888899999999887642 2223 678999999999999999999888 9999999999999
Q ss_pred HHHHHHHc
Q 008389 552 LRAKAKEM 559 (567)
Q Consensus 552 l~~~~~~~ 559 (567)
|++...+.
T Consensus 536 L~~~~~~~ 543 (546)
T PRK08314 536 LQEQEKAR 543 (546)
T ss_pred HHHHHhhh
Confidence 99877665
|
|
| >PRK06839 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-68 Score=557.84 Aligned_cols=490 Identities=28% Similarity=0.431 Sum_probs=418.8
Q ss_pred CHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHH-ccCCCCCEEEEEcCChHHHHHHHHhhhhcCCeeee
Q 008389 21 TPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCK-RSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNA 99 (567)
Q Consensus 21 t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~-~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~ 99 (567)
.+.+.|+++|+.+||++|+++.++++||.||+++++++|+.|++ .|+.+||+|+++++|++++++++|||+++|++++|
T Consensus 3 ~~~~~~~~~a~~~p~~~a~~~~~~~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~ 82 (496)
T PRK06839 3 GIAYWIEKRAYLHPDRIAIITEEEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAVP 82 (496)
T ss_pred cHHHHHHHHHHHCCCCeEEEECCceEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEe
Confidence 46789999999999999999999999999999999999999985 79999999999999999999999999999999999
Q ss_pred ccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHHHHHH
Q 008389 100 VNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFL 179 (567)
Q Consensus 100 i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l 179 (567)
+++.++.+++..+++.+++++++++++..+.+.+..... ....++.+.+ ++++.
T Consensus 83 ~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~--------~~~~~~~~~~------------------~~~~~ 136 (496)
T PRK06839 83 LNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQKVS--------YVQRVISITS------------------LKEIE 136 (496)
T ss_pred cCcccCHHHHHHHHHhcCceEEEEcHHHHHHHHHhhhcc--------CcceEEEecc------------------hHhhh
Confidence 999999999999999999999999887655544321111 1223333321 11112
Q ss_pred hcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhhHHH-HHHh
Q 008389 180 QTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYT-WSLA 258 (567)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~-~~~~ 258 (567)
..... ...+...+++++++|||||||.||+|.++|.++..+.......+++..+|++++.+|++|.+|+... +..+
T Consensus 137 ~~~~~---~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l 213 (496)
T PRK06839 137 DRKID---NFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAIDLTMHDRSIVLLPLFHIGGIGLFAFPTL 213 (496)
T ss_pred ccCCC---CCCCCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHcCCCCCCeEEEeeCCcchhhHHHHHHHHH
Confidence 11111 1123456789999999999999999999999998777766677788999999999999999998654 4455
Q ss_pred hhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHHHhcCCeee
Q 008389 259 ALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQKGFHVT 338 (567)
Q Consensus 259 ~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~i~ 338 (567)
..|+++++...+++..+++.++++++|++.++|++++.+++........ ++++|.+++||+++++++.+.+.+.+++++
T Consensus 214 ~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~~~~gG~~~~~~~~~~~~~~g~~~~ 292 (496)
T PRK06839 214 FAGGVIIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQALINCSKFETTN-LQSVRWFYNGGAPCPEELMREFIDRGFLFG 292 (496)
T ss_pred hcCcEEEEccCCCHHHHHHHHHhhCCeEEEehHHHHHHHHhCcccccCC-CcccceEEECCCCCCHHHHHHHHHhCCeeE
Confidence 6677777777889999999999999999999999999999876544444 889999999999999999999998899999
Q ss_pred eccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEecccccccccC
Q 008389 339 HTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLK 418 (567)
Q Consensus 339 ~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~ 418 (567)
+.||+||++..+...... ......+++|.|++++ .++|+|++ +..++.| +.|||+++|+.++.||++
T Consensus 293 ~~YG~tE~~~~~~~~~~~---------~~~~~~~~~G~p~~~~-~~~i~d~~-~~~~~~g--~~Gel~v~~~~~~~gy~~ 359 (496)
T PRK06839 293 QGFGMTETSPTVFMLSEE---------DARRKVGSIGKPVLFC-DYELIDEN-KNKVEVG--EVGELLIRGPNVMKEYWN 359 (496)
T ss_pred eeccCCCCCcceEecccc---------cccccCCCCcccCCCc-eEEEECCC-cCCCCCC--CceEEEEECCCcchhhcC
Confidence 999999998655433211 1112347899999999 89999988 6678887 789999999999999999
Q ss_pred CCccchhcccCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeecCCCCCcceEE
Q 008389 419 NPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAF 498 (567)
Q Consensus 419 ~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~ 498 (567)
+++.+...+.+|||+|||+|+++++|.+++.||.+|+|+.+|.+|+|.+||+.+.++|+|.+++|++.++...|+.++++
T Consensus 360 ~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~ 439 (496)
T PRK06839 360 RPDATEETIQDGWLCTGDLARVDEDGFVYIVGRKKEMIISGGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAF 439 (496)
T ss_pred ChHHHHHHHcCCCeeecceEEEcCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEE
Confidence 99999888899999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred EEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHHHH
Q 008389 499 VTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKE 558 (567)
Q Consensus 499 v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~ 558 (567)
|+++++. ..+. ++++++++++|+.+++|..+++++ +|+|.+||++|++|+++.++
T Consensus 440 v~~~~~~-~~~~----~~l~~~~~~~l~~~~~P~~~~~v~~~P~t~~GKi~r~~l~~~~~~ 495 (496)
T PRK06839 440 IVKKSSS-VLIE----KDVIEHCRLFLAKYKIPKEIVFLKELPKNATGKIQKAQLVNQLKS 495 (496)
T ss_pred EEECCCC-CCCH----HHHHHHHHhhCcCCCCCcEEEEeccCCCCccccccHHHHHHHhhc
Confidence 9988765 3344 678999999999999999999888 99999999999999988764
|
|
| >PRK05605 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-68 Score=564.73 Aligned_cols=525 Identities=25% Similarity=0.339 Sum_probs=431.2
Q ss_pred cccccchhhhcccCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHH
Q 008389 8 DDLPKNAANYMALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAH 87 (567)
Q Consensus 8 ~~~~~~~~~~~~~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~ 87 (567)
..|...+.+.+++|+.++++++++++|+++|+++.++.+||.||+++++++|+.|.+.|+++||+|+++++|++++++++
T Consensus 20 ~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~~~n~~~~~~~~ 99 (573)
T PRK05605 20 APWTPHDLDYGDTTLVDLYDNAVARFGDRPALDFFGATTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAF 99 (573)
T ss_pred CCCCCcccCCCcCCHHHHHHHHHHHCCCCeEEEeCCCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHH
Confidence 33444444555679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcCCeeeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcc-----
Q 008389 88 FGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPK----- 162 (567)
Q Consensus 88 lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----- 162 (567)
+||+++|++++|++|.++.+++.++++.++++++|++++....+.+..... ....++.++.......
T Consensus 100 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~--------~~~~i~~~~~~~~~~~~~~~~ 171 (573)
T PRK05605 100 YAVLRLGAVVVEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRTT--------PLETIVSVNMIAAMPLLQRLA 171 (573)
T ss_pred HHHHhcCcEEeecCcCCCHHHHHHHHhccCCcEEEechhhHHHHHhhhhcc--------ccceeEeeecccccccccccc
Confidence 999999999999999999999999999999999999887665554432211 1222333221100000
Q ss_pred ------------cchhccCCChHHHHHHHhcCCCCC---CCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHH
Q 008389 163 ------------DLKYALGRGAVEYEKFLQTGDPQF---DWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSV 227 (567)
Q Consensus 163 ------------~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~ 227 (567)
+.......+...|++++....... ........+++++++|||||||.||+|.++|+++..++...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~ 251 (573)
T PRK05605 172 LRLPIPALRKARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQG 251 (573)
T ss_pred cccccccccccccccccCCCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHH
Confidence 000001223445666655422110 11123457899999999999999999999999998777654
Q ss_pred HHHhc-c-CCCcEEEEecCccchhhhHHHH-HHhhhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCC
Q 008389 228 ALIWG-M-NEGAVYLWTLPMFHCNGWCYTW-SLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSED 304 (567)
Q Consensus 228 ~~~~~-~-~~~d~~~~~~p~~~~~g~~~~~-~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~ 304 (567)
...+. + ..++++++.+|++|.+|+...+ ..+..|+++++....++..+++.++++++|++.++|++++.+.+.....
T Consensus 252 ~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~ 331 (573)
T PRK05605 252 KAWVPGLGDGPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEER 331 (573)
T ss_pred HhhccccCCCCcEEEEecChHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCcccc
Confidence 44332 2 3478999999999999986544 4566788877777889999999999999999999999999999876655
Q ss_pred CcCCCCchhhhhccCCCCCHHHHHHHHh-cCCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccc
Q 008389 305 TILPLPHVVHVNTAGAAPPPSVLHAMSQ-KGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEK 383 (567)
Q Consensus 305 ~~~~l~~lr~i~~~G~~l~~~~~~~~~~-~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~ 383 (567)
... ++++|.+++||+++++++.+.+.+ .+.++++.||+||+++++..+.... ....+.+|.|++++ .
T Consensus 332 ~~~-~~~lr~i~~gg~~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~----------~~~~~~~G~~~~~~-~ 399 (573)
T PRK05605 332 GVD-LSGVRNAFSGAMALPVSTVELWEKLTGGLLVEGYGLTETSPIIVGNPMSD----------DRRPGYVGVPFPDT-E 399 (573)
T ss_pred CCC-chhccEEEECCCcCCHHHHHHHHHHhCCCeecccccchhchhhhcCCccc----------CCcCCccccCCCCC-E
Confidence 555 889999999999999999999885 4889999999999987665432211 12236789999999 8
Q ss_pred eeEeeCCC-CCccCCCCCceEEEEEecccccccccCCCccchhcccCCccccCceEEEeCCCcEEEeccccceeeeCcee
Q 008389 384 LDVIDTRT-QQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGEN 462 (567)
Q Consensus 384 ~~i~d~~~-~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~ 462 (567)
++|+|+++ +.+++.+ +.|||+++|+.++.||++++..+...|.+|||+|||+|+++++|.+++.||.+|+++.+|++
T Consensus 400 ~~i~d~~~~~~~~~~g--~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~i~gR~dd~i~~~G~~ 477 (573)
T PRK05605 400 VRIVDPEDPDETMPDG--EEGELLVRGPQVFKGYWNRPEETAKSFLDGWFRTGDVVVMEEDGFIRIVDRIKELIITGGFN 477 (573)
T ss_pred EEEEcCCCCCccCCCC--CeeEEEEecCchhhhhcCChhHhhhcccCCCcccCCEEEEcCCCcEEEEeccccceeeCCEE
Confidence 99999886 6788877 78999999999999999999999999989999999999999999999999999999999999
Q ss_pred cchHHHHHHHhcCCCceeeEEEEeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccC
Q 008389 463 ISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPK 541 (567)
Q Consensus 463 v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~ 541 (567)
|+|.+||+++..++.|.+++|++.++...++.+++++++.++. ..+. ++++++++++|+.+++|..+++++ +|+
T Consensus 478 v~p~eIE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~vv~~~~~-~~~~----~~l~~~~~~~l~~~~~p~~i~~~~~iP~ 552 (573)
T PRK05605 478 VYPAEVEEVLREHPGVEDAAVVGLPREDGSEEVVAAVVLEPGA-ALDP----EGLRAYCREHLTRYKVPRRFYHVDELPR 552 (573)
T ss_pred ECHHHHHHHHHhCcccceEEEEeeecccCCeEEEEEEEECCCC-CCCH----HHHHHHHHHhCccccCCcEEEEeccCCC
Confidence 9999999999999999999999999888889999999988764 3444 788999999999999999999887 999
Q ss_pred CCCccccHHHHHHHHHHc
Q 008389 542 TATGKIQKHVLRAKAKEM 559 (567)
Q Consensus 542 t~~GKi~r~~l~~~~~~~ 559 (567)
|++||++|++|++++.+.
T Consensus 553 t~~GKi~r~~L~~~~~~~ 570 (573)
T PRK05605 553 DQLGKVRRREVREELLEK 570 (573)
T ss_pred CCcccccHHHHHHHHHHH
Confidence 999999999999988654
|
|
| >PRK04319 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-68 Score=566.80 Aligned_cols=504 Identities=24% Similarity=0.368 Sum_probs=420.5
Q ss_pred cCHH-HHHhhhhh-cCCCceeEEECC----ccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhc
Q 008389 20 LTPL-WFLDRAAT-VHPTRTSVVHGS----TRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMA 93 (567)
Q Consensus 20 ~t~~-~~l~~~a~-~~p~~~a~~~~~----~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~ 93 (567)
+++. +++++++. .+|+++|+.+.+ +++||+||.+++.++|..|.+.|+++||+|+++++|++++++++|||+++
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~ 121 (570)
T PRK04319 42 VNIAYEAIDRHADGGRKDKVALRYLDASRKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALLGALKN 121 (570)
T ss_pred eeHHHHHHHHhhccCCCCceEEEEECCCCceeecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHc
Confidence 4554 68888876 579999998853 68999999999999999999999999999999999999999999999999
Q ss_pred CCeeeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChH
Q 008389 94 GAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAV 173 (567)
Q Consensus 94 G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 173 (567)
|++++|+++.++.+++.++++.+++++++++......... ..++ ....++.++.... ...+..
T Consensus 122 G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~--~~~~-------~~~~~~~~~~~~~--------~~~~~~ 184 (570)
T PRK04319 122 GAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPA--DDLP-------SLKHVLLVGEDVE--------EGPGTL 184 (570)
T ss_pred CcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhccch--hcCC-------CceEEEEECCCcC--------CCcCcc
Confidence 9999999999999999999999999999998776443221 0111 2344555543211 112334
Q ss_pred HHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhhHH
Q 008389 174 EYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCY 253 (567)
Q Consensus 174 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~ 253 (567)
.+.+++....... ...+..++++++++|||||||.||+|.++|+++..........+++.++|++++..|++|.+|+..
T Consensus 185 ~~~~~~~~~~~~~-~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~ 263 (570)
T PRK04319 185 DFNALMEQASDEF-DIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVLDLHEDDVYWCTADPGWVTGTSY 263 (570)
T ss_pred CHHHHHhhcCCcC-CccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhcCCCCCceEEecCChHHhhCchH
Confidence 5666665433322 122345688999999999999999999999999988877777788999999999999999888764
Q ss_pred -HHHHhhhcCeeEEec-cCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCC--CCcCCCCchhhhhccCCCCCHHHHHH
Q 008389 254 -TWSLAALCGTSICLR-QVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSE--DTILPLPHVVHVNTAGAAPPPSVLHA 329 (567)
Q Consensus 254 -~~~~~~~g~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~--~~~~~l~~lr~i~~~G~~l~~~~~~~ 329 (567)
.+.++..|+++++.. .+++..+++.|+++++|+++++|++++.+.+.... .... ++++|.++++|+++++++.++
T Consensus 264 ~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~-~~~lr~~~~gG~~l~~~~~~~ 342 (570)
T PRK04319 264 GIFAPWLNGATNVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLVKKYD-LSSLRHILSVGEPLNPEVVRW 342 (570)
T ss_pred HHHHHHhcCceEEEECCCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCcccccCC-cccceEEEEcccCCCHHHHHH
Confidence 455566777777664 57899999999999999999999999999875432 2223 789999999999999999999
Q ss_pred HHh-cCCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEe
Q 008389 330 MSQ-KGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMS 408 (567)
Q Consensus 330 ~~~-~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~ 408 (567)
+.+ ++.++++.||+||+++.+...... .....+++|.|+|++ +++|+|++ +.+++.| +.|||+++
T Consensus 343 ~~~~~g~~i~~~YG~tE~~~~~~~~~~~----------~~~~~~~~G~p~~g~-~~~i~d~~-~~~~~~g--~~Gel~i~ 408 (570)
T PRK04319 343 GMKVFGLPIHDNWWMTETGGIMIANYPA----------MDIKPGSMGKPLPGI-EAAIVDDQ-GNELPPN--RMGNLAIK 408 (570)
T ss_pred HHHHhCCCeEeceeecccCCEEEecCCC----------CCCCCCcCcCCCCCC-EEEEECCC-CCCCCCC--CceEEEEc
Confidence 885 589999999999997765432111 011236899999999 89999976 7888887 89999999
Q ss_pred c--ccccccccCCCccchhcccCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEe
Q 008389 409 G--NVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVAR 486 (567)
Q Consensus 409 ~--~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~ 486 (567)
| +.++.||+++++.+...|.+|||+|||+|+++++|+++++||.+|+|+.+|++|+|.+||+.+.++|.|.+++|++.
T Consensus 409 ~~~~~~~~GY~~~~~~~~~~~~~gw~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~i~p~eIE~~l~~~~~V~~~~v~g~ 488 (570)
T PRK04319 409 KGWPSMMRGIWNNPEKYESYFAGDWYVSGDSAYMDEDGYFWFQGRVDDVIKTSGERVGPFEVESKLMEHPAVAEAGVIGK 488 (570)
T ss_pred CCCChHHhHhcCCHHHhhhhhcCCceEeCcEEEECCCeeEEEEecCCCEEEECCEEECHHHHHHHHhhCCCeeecceecc
Confidence 7 89999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHHHH
Q 008389 487 ADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKE 558 (567)
Q Consensus 487 ~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~ 558 (567)
+++..|+.+++++++.++... .+.+.++++++++++|+.|++|..+++++ ||+|++||++|++|+++..+
T Consensus 489 ~~~~~g~~~~a~v~~~~~~~~--~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~iP~t~~GKv~r~~L~~~~~~ 559 (570)
T PRK04319 489 PDPVRGEIIKAFVALRPGYEP--SEELKEEIRGFVKKGLGAHAAPREIEFKDKLPKTRSGKIMRRVLKAWELG 559 (570)
T ss_pred cCcCCceEEEEEEEECCCCCC--CHHHHHHHHHHHHHhcccccCCcEEEEeCCCCCCCchhhhHHHHHHHHhC
Confidence 998889999999998876421 23445789999999999999999999888 99999999999999998754
|
|
| >PRK10524 prpE propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-68 Score=570.15 Aligned_cols=517 Identities=22% Similarity=0.271 Sum_probs=411.7
Q ss_pred HHHHhhhhhcCCCceeEEEC------CccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCe
Q 008389 23 LWFLDRAATVHPTRTSVVHG------STRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAV 96 (567)
Q Consensus 23 ~~~l~~~a~~~p~~~a~~~~------~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~ 96 (567)
.++|++++..+|+++|+++. .+++||+||.+++.++|+.|++.|+++||+|+++++|++++++++|||+++|++
T Consensus 56 ~~~l~~~~~~~p~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav 135 (629)
T PRK10524 56 HNAVDRHLAKRPEQLALIAVSTETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLACARIGAI 135 (629)
T ss_pred HHHHHHhhccCCCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcE
Confidence 67888888889999999973 368999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccCChHHHHHHHhccCceEEEEcccc---------hHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhc
Q 008389 97 LNAVNIRLNAPTIAFLLGHSASAVIMVDQEY---------FKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYA 167 (567)
Q Consensus 97 ~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 167 (567)
++|+++.++.+++.++++.++++++|+++.. .+.+.+...... .....++.++....... .
T Consensus 136 ~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~vi~~~~~~~~~~----~ 205 (629)
T PRK10524 136 HSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQ------HKPRHVLLVDRGLAPMA----R 205 (629)
T ss_pred EEeeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcC------CCCCEEEEEeCCCCCcC----c
Confidence 9999999999999999999999999997642 233333322211 02345555543211100 0
Q ss_pred cCCChHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHH-HHHHhccCCCcEEEEecCcc
Q 008389 168 LGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLS-VALIWGMNEGAVYLWTLPMF 246 (567)
Q Consensus 168 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~-~~~~~~~~~~d~~~~~~p~~ 246 (567)
.......+.++.........+....+.+++++++|||||||.||+|.++|.++...... ....++++++|++++..|++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 285 (629)
T PRK10524 206 VAGRDVDYATLRAQHLGARVPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIFGGKAGETFFCASDIG 285 (629)
T ss_pred ccCCcccHHHHHhcCCCCCCCceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCCEEEEcCCCC
Confidence 11122345555543322211222245689999999999999999999999987654433 34456889999999999999
Q ss_pred chhhhHHH-HHHhhhcCeeEEec----cCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCC--CCcCCCCchhhhhccC
Q 008389 247 HCNGWCYT-WSLAALCGTSICLR----QVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSE--DTILPLPHVVHVNTAG 319 (567)
Q Consensus 247 ~~~g~~~~-~~~~~~g~~~~~~~----~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~--~~~~~l~~lr~i~~~G 319 (567)
|..++.+. +..++.|+++++.. .+++..+++.|+++++|++.++|+.++.+.+.... .... ++++|.++++|
T Consensus 286 ~~~~~~~~~~~~l~~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~-l~~lr~i~~~G 364 (629)
T PRK10524 286 WVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPALLRKHD-LSSLRALFLAG 364 (629)
T ss_pred eeccchHHHHHHHhCCCEEEEECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCcccccccC-hhheeEEEEeC
Confidence 98887554 44556677776664 35789999999999999999999999998875432 2233 78999999999
Q ss_pred CCCCHHHHHHHHh-cCCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCC
Q 008389 320 AAPPPSVLHAMSQ-KGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPAD 398 (567)
Q Consensus 320 ~~l~~~~~~~~~~-~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~ 398 (567)
+++++++.+++.+ +++++++.||+||+++.+........ ......+++|.|++++ .++|+|+++|++++.|
T Consensus 365 e~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~-------~~~~~~~~~G~p~~g~-~~~i~d~~~g~~~~~g 436 (629)
T PRK10524 365 EPLDEPTASWISEALGVPVIDNYWQTETGWPILAIARGVE-------DRPTRLGSPGVPMYGY-NVKLLNEVTGEPCGPN 436 (629)
T ss_pred CCCCHHHHHHHHHhcCCCeEeccccccccchhhcCCCCcc-------cCcCCCCCcccCcCCc-eEEEEeCCCCCCCCCC
Confidence 9999999999885 58999999999999754332211100 0112346889999999 8999998669999888
Q ss_pred CCceEEEEEecc---cccccccCCCccchhcc----cCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHH
Q 008389 399 GKTIGEIVMSGN---VVMKGYLKNPKANEETF----ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENM 471 (567)
Q Consensus 399 ~~~~Gei~v~~~---~~~~gy~~~~~~~~~~~----~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~ 471 (567)
+.|||+++|| .++.|||++++.....+ .++||+|||+|++++||+++++||.||+||++|.+|+|.+||++
T Consensus 437 --~~Gel~i~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~ 514 (629)
T PRK10524 437 --EKGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLFGRQVYSTFDWGIRDADGYYFILGRTDDVINVAGHRLGTREIEES 514 (629)
T ss_pred --CcEEEEEcCCCChhhcCCccCChHHHHHhhhccCCCcEEEcCCcEEEcCCCcEEEEEEecCeEEeCCEEeCHHHHHHH
Confidence 7899999998 57889999887665433 46899999999999999999999999999999999999999999
Q ss_pred HhcCCCceeeEEEEeecCCCCCcceEEEEEcCCccch---hhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccc
Q 008389 472 MYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKS---NEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKI 547 (567)
Q Consensus 472 l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~---~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi 547 (567)
|.++|+|.+++|++.+++..|+.++++++++++.... ..+.+.++|+++++++|+.++.|..|.+++ ||+|++||+
T Consensus 515 l~~~p~V~e~~vvg~~d~~~g~~~~~~vv~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~P~~i~~v~~lP~T~sGKi 594 (629)
T PRK10524 515 ISSHPAVAEVAVVGVKDALKGQVAVAFVVPKDSDSLADREARLALEKEIMALVDSQLGAVARPARVWFVSALPKTRSGKL 594 (629)
T ss_pred HHhCCCcceEEEEccccCCCCeEEEEEEEECCCCccccccchHHHHHHHHHHHHhhcCCCcCCCEEEEcCCCCCCCCcch
Confidence 9999999999999999998899999999988754211 123456789999999999999999999888 999999999
Q ss_pred cHHHHHHHHHHcC
Q 008389 548 QKHVLRAKAKEMG 560 (567)
Q Consensus 548 ~r~~l~~~~~~~~ 560 (567)
+|+.|+++..+..
T Consensus 595 ~R~~L~~~~~~~~ 607 (629)
T PRK10524 595 LRRAIQAIAEGRD 607 (629)
T ss_pred HHHHHHHHHcCCC
Confidence 9999999876543
|
|
| >PLN03052 acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-68 Score=569.81 Aligned_cols=519 Identities=19% Similarity=0.226 Sum_probs=408.2
Q ss_pred cCHH-HHHhhhhhcCCCceeEEECC--------ccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhh
Q 008389 20 LTPL-WFLDRAATVHPTRTSVVHGS--------TRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGV 90 (567)
Q Consensus 20 ~t~~-~~l~~~a~~~p~~~a~~~~~--------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~ 90 (567)
+++. .+|+++++++|+++|+++.+ +++||+||++++.++|+.|++.|+++||+|+++++|++++++++|||
T Consensus 174 ln~~~~~l~~~~~~~pd~~Ai~~~~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~~pn~~e~via~LA~ 253 (728)
T PLN03052 174 LNVAECCLTPKPSKTDDSIAIIWRDEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNVHAVIIYLAI 253 (728)
T ss_pred eEHHHHHHHHHhccCCCCeEEEEECCCCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence 4553 46667666789999999854 37999999999999999999999999999999999999999999999
Q ss_pred hhcCCeeeeccccCChHHHHHHHhccCceEEEEcccch------HHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccc
Q 008389 91 PMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYF------KLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDL 164 (567)
Q Consensus 91 ~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 164 (567)
+++|++++|+++.++.+++.+++++++++++|+++... +......... ...++++....... ..
T Consensus 254 ~~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~---------~~~~iv~~~~~~~~-~~ 323 (728)
T PLN03052 254 ILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAK---------APKAIVLPADGKSV-RV 323 (728)
T ss_pred HHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhc---------CCcEEEEeCCCCcc-cc
Confidence 99999999999999999999999999999999987542 1122211111 12333333211000 00
Q ss_pred hhccCCChHHHHHHHhcCCCC---CCC-CCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEE
Q 008389 165 KYALGRGAVEYEKFLQTGDPQ---FDW-KPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYL 240 (567)
Q Consensus 165 ~~~~~~~~~~~~~~l~~~~~~---~~~-~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~ 240 (567)
........|++++...... ... ......+++++|+|||||||.||||+++|.+++.........++++++|+++
T Consensus 324 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~~l~~~d~~~ 401 (728)
T PLN03052 324 --KLREGDMSWDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHLDIRKGDIVC 401 (728)
T ss_pred --ccccCCccHHHHHhccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhcCCCCCcEEE
Confidence 0011234577766543211 011 1123558999999999999999999999999877766666667889999999
Q ss_pred EecCccchhhhHHHHHHhhhcCeeEEecc-CCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccC
Q 008389 241 WTLPMFHCNGWCYTWSLAALCGTSICLRQ-VTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAG 319 (567)
Q Consensus 241 ~~~p~~~~~g~~~~~~~~~~g~~~~~~~~-~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G 319 (567)
+..|++|+.+....+.+++.|+++++... +++..+++.++++++|++.++|++++.|.+.......+ +++||.++++|
T Consensus 402 ~~~~l~w~~g~~~v~~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~~~~~d-lssLr~i~s~G 480 (728)
T PLN03052 402 WPTNLGWMMGPWLVYASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNCMAGLD-WSSIRCFGSTG 480 (728)
T ss_pred ECCCcHHHhHHHHHHHHHHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEECHHHHHHHHhcCCcccCC-hhheeEEEecC
Confidence 99999999998766677888999888753 56678999999999999999999999998765444445 89999999999
Q ss_pred CCCCHHHHHHHHhc-C-CeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCC
Q 008389 320 AAPPPSVLHAMSQK-G-FHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPA 397 (567)
Q Consensus 320 ~~l~~~~~~~~~~~-~-~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~ 397 (567)
++++++...++.+. + .++.+.||+||+++.+...... .....+.+|.|.+|+ .++|+|++ |++++.
T Consensus 481 e~l~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~----------~~~~~g~~g~p~~g~-~v~v~d~~-g~~v~~ 548 (728)
T PLN03052 481 EASSVDDYLWLMSRAGYKPIIEYCGGTELGGGFVTGSLL----------QPQAFAAFSTPAMGC-KLFILDDS-GNPYPD 548 (728)
T ss_pred CCCCHHHHHHHHHhcCCCCeEeeccChhhCcccccCCCC----------CCCCCCccccCCCCc-eEEEECCC-CCCCCC
Confidence 99999988877653 4 5899999999997654432110 012346789999999 89999976 999988
Q ss_pred CCCceEEEEEeccc--ccccccCCCccchhccc-----CC--ccccCceEEEeCCCcEEEeccccceeeeCceecchHHH
Q 008389 398 DGKTIGEIVMSGNV--VMKGYLKNPKANEETFA-----NG--WYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEV 468 (567)
Q Consensus 398 ~~~~~Gei~v~~~~--~~~gy~~~~~~~~~~~~-----~g--~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~i 468 (567)
|..+.|||+++++. ...+|+++.. ...-|. .| ||+|||+++++++|+++++||+||+||++|.+|++.||
T Consensus 549 g~~~~GEL~v~~~~~~~~~~~~~~~~-~~~yf~~~p~~~g~~~~~tGDl~~~d~dG~l~i~GR~Dd~I~~~G~rI~~~EI 627 (728)
T PLN03052 549 DAPCTGELALFPLMFGASSTLLNADH-YKVYFKGMPVFNGKILRRHGDIFERTSGGYYRAHGRADDTMNLGGIKVSSVEI 627 (728)
T ss_pred CCCceEEEEEeCCCCCCCccccCchh-hhhhhhcCCCCCCCEEEecCceEEECCCCeEEEEecCCCEEeeCCEEeCHHHH
Confidence 74347999998652 2345665432 222231 23 89999999999999999999999999999999999999
Q ss_pred HHHHh-cCCCceeeEEEEeecCCCC-CcceEEEEEc--CCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCC
Q 008389 469 ENMMY-LHPAVLEASVVARADERWG-ESPCAFVTLK--PEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTA 543 (567)
Q Consensus 469 E~~l~-~~~~i~~~~v~~~~~~~~g-~~~~~~v~~~--~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~ 543 (567)
|+++. .+|.|.+++|++.+++..| +++++||+++ ++. ..+.+++.+.+++.++++|++++.|..|++++ ||+|+
T Consensus 628 E~~l~~~~p~V~eaaVvg~~d~~~g~e~~~afVvl~~~~g~-~~~~~~L~~~i~~~i~~~l~~~~~p~~i~~v~~lP~T~ 706 (728)
T PLN03052 628 ERVCNAADESVLETAAIGVPPPGGGPEQLVIAAVLKDPPGS-NPDLNELKKIFNSAIQKKLNPLFKVSAVVIVPSFPRTA 706 (728)
T ss_pred HHHHHhcCCCcceEEEEeeecCCCCcEEEEEEEEEecCCCC-CCCHHHHHHHHHHHHHhhcCCccCCCEEEEcCCCCCCC
Confidence 99995 7899999999999988766 8899999988 443 34556777888889999999999999999888 99999
Q ss_pred CccccHHHHHHHHHHcCCccccCC
Q 008389 544 TGKIQKHVLRAKAKEMGPVRKSKL 567 (567)
Q Consensus 544 ~GKi~r~~l~~~~~~~~~~~~~~~ 567 (567)
+||++|+.|++.+.+... .|||
T Consensus 707 sGKi~Rr~Lr~~~~~~~~--~~~~ 728 (728)
T PLN03052 707 SNKVMRRVLRQQLAQELS--RSKL 728 (728)
T ss_pred chHHHHHHHHHHHHhhhh--ccCC
Confidence 999999999999987764 5554
|
|
| >PLN02574 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-68 Score=563.11 Aligned_cols=509 Identities=23% Similarity=0.323 Sum_probs=413.3
Q ss_pred cccCHHHHHhhhhhcCCCceeEEECC--ccccHHHHHHHHHHHHHHHHH-ccCCCCCEEEEEcCChHHHHHHHHhhhhcC
Q 008389 18 MALTPLWFLDRAATVHPTRTSVVHGS--TRYTWLQTYQRCRRLASALCK-RSIGLGCTVAIIAPNIPAIYEAHFGVPMAG 94 (567)
Q Consensus 18 ~~~t~~~~l~~~a~~~p~~~a~~~~~--~~~Ty~el~~~~~~lA~~L~~-~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G 94 (567)
|.+++.+.+... ..+|+++|+++.. .++||+||.+++.++|+.|.+ .|+++||+|+++++|++++++++|||+++|
T Consensus 38 ~~~~~~~~l~~~-~~~~~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~~G~~~gd~V~i~~~n~~~~~~~~la~~~~G 116 (560)
T PLN02574 38 PNLDAVSFIFSH-HNHNGDTALIDSSTGFSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVLSLG 116 (560)
T ss_pred CCCCHHHHHhcC-cccCCCCEEEECCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHhC
Confidence 344554444433 5789999999854 379999999999999999998 999999999999999999999999999999
Q ss_pred CeeeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHH
Q 008389 95 AVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVE 174 (567)
Q Consensus 95 ~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 174 (567)
++++|++|.++.+++.++++.+++++++++.+..+.+.. ....++.+........ .......
T Consensus 117 ~v~v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~-----~~~~~~~ 178 (560)
T PLN02574 117 GIVTTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSP-------------LGVPVIGVPENYDFDS-----KRIEFPK 178 (560)
T ss_pred eEEeCcCcccCHHHHHHHHHhcCCEEEEECHHHHHHHHh-------------cCCcEEecCccccccc-----CccCccc
Confidence 999999999999999999999999999998775444322 1112333221100000 0011234
Q ss_pred HHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHH----hc-cCCCcEEEEecCccchh
Q 008389 175 YEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALI----WG-MNEGAVYLWTLPMFHCN 249 (567)
Q Consensus 175 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~----~~-~~~~d~~~~~~p~~~~~ 249 (567)
+.+++....... ......++++++++|||||||.||+|.++|+++...+...... +. ....++++..+|++|.+
T Consensus 179 ~~~~~~~~~~~~-~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~ 257 (560)
T PLN02574 179 FYELIKEDFDFV-PKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIY 257 (560)
T ss_pred HHHHhhcCCccc-ccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcEEEEecchHHHH
Confidence 555554432221 1223456899999999999999999999999998877655432 22 23567889999999999
Q ss_pred hhHHHHHHh-hhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHH
Q 008389 250 GWCYTWSLA-ALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLH 328 (567)
Q Consensus 250 g~~~~~~~~-~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~ 328 (567)
|+...+... ..|++.++...+++..+++.|+++++|++.++|+++..+.+.........++++|.+++||++++++..+
T Consensus 258 g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~ 337 (560)
T PLN02574 258 GLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGVCGEVLKSLKQVSCGAAPLSGKFIQ 337 (560)
T ss_pred HHHHHHHHHHhcCCEEEEecCCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCccccccCccccceEEEEecccCCHHHHH
Confidence 987655544 5688877778889999999999999999999999999998875432222278999999999999999999
Q ss_pred HHHh-c-CCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEE
Q 008389 329 AMSQ-K-GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIV 406 (567)
Q Consensus 329 ~~~~-~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~ 406 (567)
++.+ + ++++++.||+||++.+++...... .....+++|.|++++ +++|+|++++++++.| +.|||+
T Consensus 338 ~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~---------~~~~~~~vG~~~~~~-~v~i~d~~~g~~~~~g--~~Gei~ 405 (560)
T PLN02574 338 DFVQTLPHVDFIQGYGMTESTAVGTRGFNTE---------KLSKYSSVGLLAPNM-QAKVVDWSTGCLLPPG--NCGELW 405 (560)
T ss_pred HHHHHCCCCcEEecccccccCceeecCCCcc---------ccCCCCceeeeCCCc-EEEEEeCCCCcCCCCC--CCeEEE
Confidence 9885 4 689999999999976544221111 112346899999999 8999998889999988 789999
Q ss_pred EecccccccccCCCccchhcc-cCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEE
Q 008389 407 MSGNVVMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVA 485 (567)
Q Consensus 407 v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~ 485 (567)
++|++++.||+++++.+...| .+|||+|||+|+++++|++++.||.+|+|+++|++|++.+||.+|.++|+|.+++|++
T Consensus 406 v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~V~~~~v~~ 485 (560)
T PLN02574 406 IQGPGVMKGYLNNPKATQSTIDKDGWLRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPADLEAVLISHPEIIDAAVTA 485 (560)
T ss_pred EECcchhhhhcCChhHhhhhccCCCCcccceEEEEECCCeEEEEecchhheEECCEEECHHHHHHHHHhCCCcceEEEEc
Confidence 999999999999999988877 5899999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHHHHcCCcc
Q 008389 486 RADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKEMGPVR 563 (567)
Q Consensus 486 ~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~~~~ 563 (567)
.+++..|+.++++|+..++. ..+. +++.++++++|+.++.|..+.+++ ||+|++||++|+.|++++.+....+
T Consensus 486 ~~~~~~g~~~~a~v~~~~~~-~~~~----~~l~~~~~~~l~~~~~p~~v~~v~~iP~t~~GKi~r~~L~~~~~~~~~~~ 559 (560)
T PLN02574 486 VPDKECGEIPVAFVVRRQGS-TLSQ----EAVINYVAKQVAPYKKVRKVVFVQSIPKSPAGKILRRELKRSLTNSVSSR 559 (560)
T ss_pred cccCCCCcceEEEEEeCCCC-CCCH----HHHHHHHHHhccCcccCcEEEEeeccCCCCcchhhHHHHHHHHhhccccC
Confidence 99988889999999887654 3344 678899999999999999998887 9999999999999999998776554
|
|
| >PRK06187 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-68 Score=559.02 Aligned_cols=517 Identities=35% Similarity=0.565 Sum_probs=447.4
Q ss_pred hhcccCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCC
Q 008389 16 NYMALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGA 95 (567)
Q Consensus 16 ~~~~~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~ 95 (567)
++.++|+.++|.++++.+|+++|+.+.++++||+||++++.++|+.|.+.|+++|++|+++++|+.++++++|||+++|+
T Consensus 2 ~~~~~~l~~~l~~~~~~~p~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l~~~~~~~~~~~~la~~~~G~ 81 (521)
T PRK06187 2 QDYPLTIGRILRHGARKHPDKEAVYFDGRRTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGA 81 (521)
T ss_pred CcccCCHHHHHHHHHHHCCCceEEEeCCceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCe
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHH
Q 008389 96 VLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEY 175 (567)
Q Consensus 96 ~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 175 (567)
+++|+++.++.+++..+++.+++++++++.+..+.+.......+ ....++.+++.... .......++
T Consensus 82 ~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~------~~~~~~~~~ 148 (521)
T PRK06187 82 VLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQLP-------TVRTVIVEGDGPAA------PLAPEVGEY 148 (521)
T ss_pred EEEecccCCCHHHHHHHHHhcCCeEEEEcchHHHHHHHHhhccC-------CccEEEEecCcccc------ccccccccH
Confidence 99999999999999999999999999999987776665544332 34455555543211 112344566
Q ss_pred HHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhhHHHH
Q 008389 176 EKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTW 255 (567)
Q Consensus 176 ~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~ 255 (567)
.+++........ ......+++++++|||||||.||+|.++|+++..........++++++|++++.+|++|.+++...+
T Consensus 149 ~~~~~~~~~~~~-~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 227 (521)
T PRK06187 149 EELLAAASDTFD-FPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKLSRDDVYLVIVPMFHVHAWGLPY 227 (521)
T ss_pred HHHhhcCCccCC-CCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhhCCCCCCEEEEeCCchHHhhHHHHH
Confidence 666655443322 2235667899999999999999999999999999888888889999999999999999999998878
Q ss_pred HHhhhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHHHhc-C
Q 008389 256 SLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQK-G 334 (567)
Q Consensus 256 ~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~-~ 334 (567)
.++..|+++++....++..+++.++++++|.++++|++++.+.+........ +.++|.+++||+++++++.+.+.+. +
T Consensus 228 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~-~~~l~~v~~~Ge~l~~~~~~~~~~~~~ 306 (521)
T PRK06187 228 LALMAGAKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYFVD-FSSLRLVIYGGAALPPALLREFKEKFG 306 (521)
T ss_pred HHHHhCCEEEecCCCCHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCCccC-cchhhEEEEcCcCCCHHHHHHHHHHhC
Confidence 8888899888887789999999999999999999999999999887664444 8899999999999999999999865 9
Q ss_pred CeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEecccccc
Q 008389 335 FHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMK 414 (567)
Q Consensus 335 ~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~~ 414 (567)
+++++.||+||+++++..+....... ........+|.|++++ .++|+|++ +.+++.+.++.|||+++|+.++.
T Consensus 307 ~~v~~~YG~tE~~~~~~~~~~~~~~~-----~~~~~~~~~G~~~~~~-~~~i~~~~-~~~~~~~~g~~Gel~v~~~~~~~ 379 (521)
T PRK06187 307 IDLVQGYGMTETSPVVSVLPPEDQLP-----GQWTKRRSAGRPLPGV-EARIVDDD-GDELPPDGGEVGEIIVRGPWLMQ 379 (521)
T ss_pred cchheeeccCccCcccccCCcccccc-----cccccCCccccccCCe-EEEEECCC-CCCCCCCCCCeeEEEEECcchhh
Confidence 99999999999987666543322110 0112457899999999 89999987 78888833489999999999999
Q ss_pred cccCCCccchhcccCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeecCCCCCc
Q 008389 415 GYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGES 494 (567)
Q Consensus 415 gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~ 494 (567)
||+++++.+...|.++||+|||+++++++|.+++.||.+|+++.+|.++++.+||+.+.++++|.+++|++.+++..++.
T Consensus 380 ~y~~~~~~~~~~~~~~~~~tGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~ 459 (521)
T PRK06187 380 GYWNRPEATAETIDGGWLHTGDVGYIDEDGYLYITDRIKDVIISGGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGER 459 (521)
T ss_pred hhcCCHHHHHHHhhCCceeccceEEEcCCCCEEEeecccceEEcCCeEECHHHHHHHHHhCCCceEEEEEeccCCCcCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888899
Q ss_pred ceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHHHHc
Q 008389 495 PCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKEM 559 (567)
Q Consensus 495 ~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~ 559 (567)
+++++++.++. ..+. ++++++++++++.+..|..+.+++ +|+|++||++|++|+++|.+.
T Consensus 460 ~~~~v~~~~~~-~~~~----~~l~~~l~~~l~~~~~p~~i~~v~~~P~t~~gK~~r~~l~~~~~~~ 520 (521)
T PRK06187 460 PVAVVVLKPGA-TLDA----KELRAFLRGRLAKFKLPKRIAFVDELPRTSVGKILKRVLREQYAEG 520 (521)
T ss_pred EEEEEEECCCC-CCCH----HHHHHHHHHhccCCCCceEEEEccCCCCCCCCCeeHHHHHHHHhcC
Confidence 99999987765 3344 678899999999999999999887 999999999999999999875
|
|
| >PRK07470 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-68 Score=558.25 Aligned_cols=515 Identities=26% Similarity=0.391 Sum_probs=429.0
Q ss_pred hcccCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCe
Q 008389 17 YMALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAV 96 (567)
Q Consensus 17 ~~~~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~ 96 (567)
.-++|+.++|.+.++++|+++|+++.++++||+||++++.++|..|.+.|+++||+|+++++|+++++++++||+++|++
T Consensus 4 ~~~~~~~~~~~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~~ 83 (528)
T PRK07470 4 RRVMNLAHFLRQAARRFPDRIALVWGDRSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMFAAFRLGAV 83 (528)
T ss_pred ccCCCHHHHHHHHHHHCCCceEEEECCccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhCCeE
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHHH
Q 008389 97 LNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYE 176 (567)
Q Consensus 97 ~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 176 (567)
++++++.++.+++.++++.++++.++++.+..+.......... ....++.+.... ....++
T Consensus 84 ~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~------------~~~~~~ 144 (528)
T PRK07470 84 WVPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAAVRAASP-------DLTHVVAIGGAR------------AGLDYE 144 (528)
T ss_pred EEecCccCCHHHHHHHHHhcCceEEEEcchhHHHHHHHHhhCC-------cCceEEEeCCCc------------ccccHH
Confidence 9999999999999999999999999999887655444322211 234455544321 113455
Q ss_pred HHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHh--ccCCCcEEEEecCccchhhhHHH
Q 008389 177 KFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIW--GMNEGAVYLWTLPMFHCNGWCYT 254 (567)
Q Consensus 177 ~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~--~~~~~d~~~~~~p~~~~~g~~~~ 254 (567)
+++...............+++++++|||||||.||+|.++|.++...+......+ +...+|+++..+|++|..++...
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~ 224 (528)
T PRK07470 145 ALVARHLGARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDASLVVAPLSHGAGIHQL 224 (528)
T ss_pred HHHhcCCCCCCCcccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHhccCCCcccEEEEeccchhHHHHHHH
Confidence 5554432222222335678999999999999999999999999876555433332 56788999999999999998654
Q ss_pred HHHhhhcCeeEEec--cCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHHH-
Q 008389 255 WSLAALCGTSICLR--QVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMS- 331 (567)
Q Consensus 255 ~~~~~~g~~~~~~~--~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~- 331 (567)
+ ..+.|++.++.. .+++..+++.|+++++|++.++|++++.+.+........ ++++|.+++||+++++...+++.
T Consensus 225 ~-~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~~~~gG~~l~~~~~~~~~~ 302 (528)
T PRK07470 225 C-QVARGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAVDRYD-HSSLRYVIYAGAPMYRADQKRALA 302 (528)
T ss_pred H-HHhcCceEEEecccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcCcCCCC-CcceEEEEEcCCCCCHHHHHHHHH
Confidence 4 566777776664 478999999999999999999999999998876554444 78999999999999999998887
Q ss_pred hcCCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEeccc
Q 008389 332 QKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNV 411 (567)
Q Consensus 332 ~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~ 411 (567)
.++.++++.||+||+++.+..+..... . .........+++|.|++++ .++++|++ +.+++.+ +.|||+++|+.
T Consensus 303 ~~g~~~~~~YG~TE~~~~~~~~~~~~~-~--~~~~~~~~~~~~G~~~~g~-~~~i~d~~-~~~~~~g--~~Gel~i~~~~ 375 (528)
T PRK07470 303 KLGKVLVQYFGLGEVTGNITVLPPALH-D--AEDGPDARIGTCGFERTGM-EVQIQDDE-GRELPPG--ETGEICVIGPA 375 (528)
T ss_pred HhCcHHHHhCCCcccCCceeecchhhc-c--ccccccceeeccCcccCCc-EEEEECCC-CCCCCCC--CceEEEEeCCc
Confidence 458899999999999876654322100 0 0001123457889999999 89999976 8888888 78999999999
Q ss_pred ccccccCCCccchhcccCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeecCCC
Q 008389 412 VMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERW 491 (567)
Q Consensus 412 ~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~ 491 (567)
++.||+++++.+...|.+|||+|||+|+++++|++++.||.||+|+++|.+++|.+||..+.+++.|.+++|++.++...
T Consensus 376 ~~~gy~~~~~~~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~ 455 (528)
T PRK07470 376 VFAGYYNNPEANAKAFRDGWFRTGDLGHLDARGFLYITGRASDMYISGGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVW 455 (528)
T ss_pred cchhhcCCHHHHHhhhcCCcEecceeEEEccCCeEEEeCCccceEEeCCEEECHHHHHHHHHhCCCceEEEEEeccCccc
Confidence 99999999999988899999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHHHHcCCccc
Q 008389 492 GESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKEMGPVRK 564 (567)
Q Consensus 492 g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~~~~~ 564 (567)
|+.++++++..++. ..+. ++++++++++|+.+++|..+++++ ||+|++||++|+.|++++.+....+.
T Consensus 456 ~~~~~~~~~~~~~~-~~~~----~~~~~~l~~~l~~~~~P~~~~~~~~iP~t~~GKi~r~~l~~~~~~~~~~~~ 524 (528)
T PRK07470 456 GEVGVAVCVARDGA-PVDE----AELLAWLDGKVARYKLPKRFFFWDALPKSGYGKITKKMVREELEERGLLDL 524 (528)
T ss_pred CceeEEEEEECCCC-CCCH----HHHHHHHHHhhhcCCCCcEEEEeccCCCCCcccccHHHHHHHHHhcccccc
Confidence 88888888887664 3444 678899999999999999999887 99999999999999999998876653
|
|
| >PLN02861 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-69 Score=574.78 Aligned_cols=516 Identities=22% Similarity=0.287 Sum_probs=396.9
Q ss_pred cCHHHHHhhhhhcCCCceeEEEC-------C--ccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhh
Q 008389 20 LTPLWFLDRAATVHPTRTSVVHG-------S--TRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGV 90 (567)
Q Consensus 20 ~t~~~~l~~~a~~~p~~~a~~~~-------~--~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~ 90 (567)
.|+.++|++.++++|+++|+... + +++||+||++++.++|+.|.++|+++||+|+|+++|+++|++++|||
T Consensus 43 ~t~~~~l~~~~~~~p~~~al~~~~~~~~~~g~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~ 122 (660)
T PLN02861 43 DSPWQFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122 (660)
T ss_pred CCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 58999999999999999999742 1 47999999999999999999999999999999999999999999999
Q ss_pred hhcCCeeeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCC
Q 008389 91 PMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGR 170 (567)
Q Consensus 91 ~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 170 (567)
+++|++++|+++.++.+++.++++.++++++|++.+..+.+........ .....++.++.............+.
T Consensus 123 ~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~~~~~~~~~~~~------~~l~~ii~~~~~~~~~~~~~~~~~~ 196 (660)
T PLN02861 123 NSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCS------SNLKTIVSFGDVSSEQKEEAEELGV 196 (660)
T ss_pred HHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHHHHHHHhhhhCC------CCCEEEEEECCCChhhhhhhhcCCc
Confidence 9999999999999999999999999999999998765544433222111 0244566554321100000000111
Q ss_pred ChHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhc-----cCCCcEEEEecCc
Q 008389 171 GAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWG-----MNEGAVYLWTLPM 245 (567)
Q Consensus 171 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~-----~~~~d~~~~~~p~ 245 (567)
...++++++...... ....+..++++++|+|||||||.||||.+||++++..+......++ +.++|++++.+|+
T Consensus 197 ~~~~~~~~~~~~~~~-~~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl 275 (660)
T PLN02861 197 SCFSWEEFSLMGSLD-CELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPL 275 (660)
T ss_pred EEEEHHHHHHhCccc-CCCCccCCCceEEEEecCCCCCCCCEEEEecHHHHHHHHHHHhccccccccCCCCCEEEEECcH
Confidence 224566666543221 1122346789999999999999999999999999988766655443 4688999999999
Q ss_pred cchhhhHHHHHHhhhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCC------------------------
Q 008389 246 FHCNGWCYTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAP------------------------ 301 (567)
Q Consensus 246 ~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~------------------------ 301 (567)
+|.+++...+.++..|+++++. ..++..+++.|++++||+++++|++++.+.+..
T Consensus 276 ~H~~~~~~~~~~l~~G~~v~~~-~~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~ 354 (660)
T PLN02861 276 AHVYDQVIETYCISKGASIGFW-QGDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLG 354 (660)
T ss_pred HHHHHHHHHHHHHHhCCEEEEe-CCCHHHHHHHHHHhCCcEEeechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 9999987666666777776665 568999999999999999999999999886410
Q ss_pred -------C---CCCcC---------CC-CchhhhhccCCCCCHHHHHHHHhcCC-eeeeccCCccCcCCcccccCCCCCC
Q 008389 302 -------S---EDTIL---------PL-PHVVHVNTAGAAPPPSVLHAMSQKGF-HVTHTYGLSETYGPSTVCAWKPEWD 360 (567)
Q Consensus 302 -------~---~~~~~---------~l-~~lr~i~~~G~~l~~~~~~~~~~~~~-~i~~~YG~tE~~~~~~~~~~~~~~~ 360 (567)
. ..... .+ +++|.+++||+++++++.++++.++. ++++.||+||+++.++.....
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~---- 430 (660)
T PLN02861 355 NLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEEFLRVTSCSVLSQGYGLTESCGGCFTSIAN---- 430 (660)
T ss_pred HHhcCCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHHHHHcCCCeeEecchhhhhhceeecccc----
Confidence 0 00000 01 57899999999999998765555554 799999999987655432111
Q ss_pred CCChhhhhhhhccCCceeccccceeEeeC-CCC-CccCCCCCceEEEEEecccccccccCCCccchhcccCCccccCceE
Q 008389 361 SLPPETQARMKARQGVRFIGLEKLDVIDT-RTQ-QPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLG 438 (567)
Q Consensus 361 ~~~~~~~~~~~~~~G~~~~~~~~~~i~d~-~~~-~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~ 438 (567)
.....+++|.|+|++ +++|+|. +.| .....+ +.|||+++|++++.|||++++.+.+.|.+|||+|||+|
T Consensus 431 ------~~~~~gsvG~p~p~~-ev~i~d~~~~g~~~~~~~--~~GEi~vrGp~v~~GY~~~pe~T~~~f~dGw~~TGDlg 501 (660)
T PLN02861 431 ------VFSMVGTVGVPMTTI-EARLESVPEMGYDALSDV--PRGEICLRGNTLFSGYHKRQDLTEEVLIDGWFHTGDIG 501 (660)
T ss_pred ------cCCCCCCccCccCce-EEEEEEccccCcccCCCC--CceeEEEcCCcccccccCCHHHHHhhhhccCcccCceE
Confidence 011247899999999 8999983 323 222333 57999999999999999999999999999999999999
Q ss_pred EEeCCCcEEEeccccceeee-CceecchHHHHHHHhcCCCceeeEEEEeecCCCCCcceEEEEEcCCcc---------ch
Q 008389 439 VKHPDNYIEIKDRSKDIIIS-GGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVD---------KS 508 (567)
Q Consensus 439 ~~~~~g~l~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~---------~~ 508 (567)
++|+||++++.||+||+||. +|++|+|.+||+++.++|.|.+++|++.+. ++.++|+|++..+.- ..
T Consensus 502 ~~d~dG~l~i~GR~kd~Ik~~~G~~I~p~eIE~~l~~~p~V~~a~V~G~~~---~~~~~A~vv~~~~~l~~~~~~~~~~~ 578 (660)
T PLN02861 502 EWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIASIWVYGNSF---ESFLVAVVVPDRQALEDWAANNNKTG 578 (660)
T ss_pred EECCCCcEEEEeccccceEcCCCeEEcHHHHHHHHhcCCCeeEEEEEecCC---cceeEEEEEcCHHHHHHHHHHcCCCC
Confidence 99999999999999999995 899999999999999999999999999863 356899998764310 00
Q ss_pred hhH------HHHHHHHHHHH----h-cCCCCCCCceeecCc--c-----cCCCCccccHHHHHHHHHHc
Q 008389 509 NEQ------QLAEDIMKFCR----A-KMPAYWVPKSIVFGP--L-----PKTATGKIQKHVLRAKAKEM 559 (567)
Q Consensus 509 ~~~------~~~~~l~~~l~----~-~l~~~~~p~~i~~~~--l-----P~t~~GKi~r~~l~~~~~~~ 559 (567)
+.. .....+.+.+. + .++.+.+++.+.+.+ + .+|+++|++|+.+.+.|.+.
T Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~i~~~~l~~~~ft~~ng~lT~t~K~~R~~i~~~y~~~ 647 (660)
T PLN02861 579 DFKSLCKNLKARKYILDELNSTGKKLQLRGFEMLKAIHLEPNPFDIERDLITPTFKLKRPQLLKYYKDC 647 (660)
T ss_pred CHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCcccCcCCHHHhhhHHHHHHHHHHH
Confidence 111 12223333333 2 488999999988754 6 79999999999999998764
|
|
| >TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-68 Score=567.54 Aligned_cols=501 Identities=18% Similarity=0.193 Sum_probs=394.4
Q ss_pred cCCCceeEEECC-----ccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCeeeeccccCCh
Q 008389 32 VHPTRTSVVHGS-----TRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNA 106 (567)
Q Consensus 32 ~~p~~~a~~~~~-----~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~ 106 (567)
++++++|+++.+ +++||+||.+++.++|+.|++.|+++||+|+++++|++++++++|||+++|++++|+++.++.
T Consensus 96 ~~~~~~a~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~~n~~e~~~~~lA~~~~Gav~vp~~~~~~~ 175 (652)
T TIGR01217 96 AAGTEPALLYVDETHEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLATASVGAIWSSCSPDFGA 175 (652)
T ss_pred cCCCCeEEEEECCCCCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCeEEEecCCCCCH
Confidence 357899998843 579999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCceEEEEcccc---------hHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHHHH
Q 008389 107 PTIAFLLGHSASAVIMVDQEY---------FKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEK 177 (567)
Q Consensus 107 ~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (567)
+++.+++++++++++|+++.. .+.+.++...++ ....++.+......... .........+++
T Consensus 176 ~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~ 246 (652)
T TIGR01217 176 RGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELP-------TLRAVVHIPYLGPRETE--APKIDGALDLED 246 (652)
T ss_pred HHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHHhcCC-------CccEEEEEeCCCCcccc--cccccCcccHHH
Confidence 999999999999999998754 233333322221 33455555422110000 000112345666
Q ss_pred HHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHH-HHHHHHHHhccCCCcEEEEecCccchhhhHHHHH
Q 008389 178 FLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYL-MSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWS 256 (567)
Q Consensus 178 ~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~-~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~ 256 (567)
++...............+++++|+|||||||.||||+++|.+++. ........++++++|++++..|+.|+.+ ...+.
T Consensus 247 ~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~ 325 (652)
T TIGR01217 247 FTAAAQAAELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHCDLGPGDRLFYYTTTGWMMW-NWLVS 325 (652)
T ss_pred HHhcccCCCCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhccCCCCCcEEEEeCCcchhhh-HHHHH
Confidence 665422111111234568999999999999999999999998654 3344445578899999999999988753 33456
Q ss_pred HhhhcCeeEEecc----CCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCC--CCCcCCCCchhhhhccCCCCCHHHHHHH
Q 008389 257 LAALCGTSICLRQ----VTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPS--EDTILPLPHVVHVNTAGAAPPPSVLHAM 330 (567)
Q Consensus 257 ~~~~g~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~--~~~~~~l~~lr~i~~~G~~l~~~~~~~~ 330 (567)
+++.|++++++.. .++..+++.++++++|++.+.|.++..+..... ....+ +++||.+++||++++++..+++
T Consensus 326 ~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~-l~sLr~i~~gGe~l~~~~~~~~ 404 (652)
T TIGR01217 326 GLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGVHPARTHD-LSALQCVASTGSPLPPDGFRWV 404 (652)
T ss_pred HHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhcCCCccccCC-hhheeEEEeecCCCCHHHHHHH
Confidence 7778888887742 378899999999999999888887777765321 12233 8999999999999999999998
Q ss_pred Hhc-C--CeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEE
Q 008389 331 SQK-G--FHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVM 407 (567)
Q Consensus 331 ~~~-~--~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v 407 (567)
.+. + ..+.+.||+||+++...... +. .....+++|.|.+++ .++|+|++ |++++ | +.|||++
T Consensus 405 ~~~~~~~~~~~~~yG~TE~~~~~~~~~--~~--------~~~~~g~~g~p~~g~-~v~ivd~~-g~~~~-g--~~GEl~v 469 (652)
T TIGR01217 405 YDEIKADVWLASISGGTDICSCFAGAN--PT--------LPVHIGEIQAPGLGT-AVQSWDPE-GKPVT-G--EVGELVC 469 (652)
T ss_pred HHHhCCCceEEeccCHHHHhccccCCC--CC--------CCCcCCccCCCcCCC-ceEEECCC-CCCCC-C--CccEEEE
Confidence 753 3 56788999999754332211 00 011236788999999 89999987 77773 5 7899999
Q ss_pred ecc--cccccccCCCccch---hccc--CCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCcee
Q 008389 408 SGN--VVMKGYLKNPKANE---ETFA--NGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLE 480 (567)
Q Consensus 408 ~~~--~~~~gy~~~~~~~~---~~~~--~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~ 480 (567)
+|+ .++.|||++++.+. ..|. +|||+|||+|++|+||+++++||+||+|+++|++|+|.|||++|.+||+|.+
T Consensus 470 ~gp~p~~~~gy~~~~~~t~~~~~~~~~~~g~~~tGDlg~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~~~p~V~e 549 (652)
T TIGR01217 470 TNPMPSMPIRFWNDPDGSKYRDAYFDTYPGVWRHGDWITLTPRGGIVIHGRSDSTLNPQGVRMGSAEIYNAVERLDEVRE 549 (652)
T ss_pred ecCCCccccceeCCCccchhHHhhhcCCCCEEEcCCcEEECCCCcEEEEecccCeEecCCEEcCHHHHHHHHHhCCCcce
Confidence 996 58899999998553 2232 6899999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHHHHc
Q 008389 481 ASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKEM 559 (567)
Q Consensus 481 ~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~ 559 (567)
++|++.+++..|+.+++||+++++. ..+ +++.++|+++++++|+.+++|..|.+++ ||+|++||++|+.||+.+...
T Consensus 550 aavvg~~~~~~ge~~~afVv~~~~~-~~~-~~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~T~sGKi~r~~Lr~~~~~~ 627 (652)
T TIGR01217 550 SLCIGQEQPDGGYRVVLFVHLAPGA-TLD-DALLDRIKRTIRAGLSPRHVPDEIIEVPGIPHTLTGKRVEVAVKRVLQGT 627 (652)
T ss_pred EEEEeeecCCCCEEEEEEEEECCCC-CCC-HHHHHHHHHHHHhhCCCCcCCCEEEECCCCCCCCCccChHHHHHHHHcCC
Confidence 9999999999899999999998875 222 3455789999999999999999999988 999999999999999997654
Q ss_pred C
Q 008389 560 G 560 (567)
Q Consensus 560 ~ 560 (567)
.
T Consensus 628 ~ 628 (652)
T TIGR01217 628 P 628 (652)
T ss_pred C
Confidence 3
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway. |
| >PRK05677 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-68 Score=559.63 Aligned_cols=512 Identities=24% Similarity=0.351 Sum_probs=416.0
Q ss_pred cCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHH-ccCCCCCEEEEEcCChHHHHHHHHhhhhcCCeee
Q 008389 20 LTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCK-RSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLN 98 (567)
Q Consensus 20 ~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~-~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v 98 (567)
.|+.++|++.++++|+++|++..++++||+||++++.++|+.|.+ .|+++||+|+++++|++++++++|||+++|++++
T Consensus 24 ~~~~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~~la~~~~Ga~~v 103 (562)
T PRK05677 24 PNIQAVLKQSCQRFADKPAFSNLGKTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAVFGAMRAGLIVV 103 (562)
T ss_pred CcHHHHHHHHHHhCCCCeeEEECCceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEe
Confidence 489999999999999999999989999999999999999999997 5999999999999999999999999999999999
Q ss_pred eccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCc--cc-------------
Q 008389 99 AVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDP--KD------------- 163 (567)
Q Consensus 99 ~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~------------- 163 (567)
|+++.++.+++.++++.++++++|++.+....+.+..... ..+.++..+...... ..
T Consensus 104 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (562)
T PRK05677 104 NTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLPKT--------GVKHVIVTEVADMLPPLKRLLINAVVKHVKKM 175 (562)
T ss_pred ecCCCCCHHHHHHHHhccCceEEEEecchhhhHHHhhhcc--------CcceeEEecccccccchhhhhcccchhhcccc
Confidence 9999999999999999999999999877655444332211 122222221110000 00
Q ss_pred chhccCCChHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhc--cCC-CcEEE
Q 008389 164 LKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWG--MNE-GAVYL 240 (567)
Q Consensus 164 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~--~~~-~d~~~ 240 (567)
...........+.+.+..............++++++++|||||||.||+|.++|+++..+.......++ +.. .++++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~ 255 (562)
T PRK05677 176 VPAYHLPQAVKFNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGCEILI 255 (562)
T ss_pred ccccCCcccccHHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhccCCCCCccEEE
Confidence 000000122344555543322211122346689999999999999999999999999877665555443 333 46889
Q ss_pred EecCccchhhhHHHHHH-hhhcCeeEEec-cCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhcc
Q 008389 241 WTLPMFHCNGWCYTWSL-AALCGTSICLR-QVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTA 318 (567)
Q Consensus 241 ~~~p~~~~~g~~~~~~~-~~~g~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~ 318 (567)
+.+|++|.+++...+.. +..|++.++.. ..++..+++.|+++++|.+.++|+.+..+.......... ++++|.+++|
T Consensus 256 ~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~-~~~lr~v~~g 334 (562)
T PRK05677 256 APLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEAFRKLD-FSALKLTLSG 334 (562)
T ss_pred EcCcHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCcccccCC-hhhceEEEEc
Confidence 99999999998755544 44566555553 468899999999999999999999999998765433333 6789999999
Q ss_pred CCCCCHHHHHHHHhc-CCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCC
Q 008389 319 GAAPPPSVLHAMSQK-GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPA 397 (567)
Q Consensus 319 G~~l~~~~~~~~~~~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~ 397 (567)
|+++++++.+.+.+. ++++++.||+||+++++..+... ....+++|.|++++ .++|+|++ +++++.
T Consensus 335 G~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~-----------~~~~~~vG~~~~~~-~v~i~d~~-~~~~~~ 401 (562)
T PRK05677 335 GMALQLATAERWKEVTGCAICEGYGMTETSPVVSVNPSQ-----------AIQVGTIGIPVPST-LCKVIDDD-GNELPL 401 (562)
T ss_pred CccCCHHHHHHHHHHcCCCeeccCCccccCcceeecCcc-----------CCCCCccCccCCCC-EEEEECCC-CCCCCC
Confidence 999999999998854 89999999999987665543211 11236799999999 89999986 888988
Q ss_pred CCCceEEEEEecccccccccCCCccchhccc-CCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCC
Q 008389 398 DGKTIGEIVMSGNVVMKGYLKNPKANEETFA-NGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHP 476 (567)
Q Consensus 398 ~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~-~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~ 476 (567)
| +.|||+++|+.++.||+++++.+...|. +|||+|||+|+++++|.+++.||.+|+|+.+|.+|+|.+||+.+.+++
T Consensus 402 g--~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~i~p~eiE~~l~~~~ 479 (562)
T PRK05677 402 G--EVGELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVLAALP 479 (562)
T ss_pred C--CCeEEEEecCccchhhcCCchhhhhccCCCCcccccceEEECCCCcEEEEecCcCeEEeCCEEECHHHHHHHHHhCC
Confidence 8 7899999999999999999999988884 899999999999999999999999999999999999999999999999
Q ss_pred CceeeEEEEeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHH
Q 008389 477 AVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAK 555 (567)
Q Consensus 477 ~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~ 555 (567)
+|.+++|+++++...|+.++++++..++. ..+. ++++++++++|+++++|..+++++ ||+|++||++|++|++.
T Consensus 480 ~v~~~~v~g~~~~~~g~~~~~~v~~~~~~-~~~~----~~l~~~~~~~l~~~~~P~~i~~v~~iP~t~sGKi~r~~L~~~ 554 (562)
T PRK05677 480 GVLQCAAIGVPDEKSGEAIKVFVVVKPGE-TLTK----EQVMEHMRANLTGYKVPKAVEFRDELPTTNVGKILRRELRDE 554 (562)
T ss_pred CccEEEEEeccCccCCceEEEEEEeCCCC-CCCH----HHHHHHHHHhhhhccCCcEEEEeccCCCCCcccccHHHHHHH
Confidence 99999999999988888999999877654 3444 678899999999999999999988 99999999999999997
Q ss_pred HHHcC
Q 008389 556 AKEMG 560 (567)
Q Consensus 556 ~~~~~ 560 (567)
++...
T Consensus 555 ~~~~~ 559 (562)
T PRK05677 555 ELKKA 559 (562)
T ss_pred HHHhc
Confidence 76554
|
|
| >PRK07656 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-68 Score=554.97 Aligned_cols=504 Identities=33% Similarity=0.496 Sum_probs=429.6
Q ss_pred ccCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCeee
Q 008389 19 ALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLN 98 (567)
Q Consensus 19 ~~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v 98 (567)
..++.+.|.+.++.+|+++|+++.++++||+||++.+.++|..|.+.|+++||+|+++++|+++++++++||+++|++++
T Consensus 4 ~~~i~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~la~~~~G~~~v 83 (513)
T PRK07656 4 WMTLPELLARAARRFGDKEAYVFGDQRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVV 83 (513)
T ss_pred cccHHHHHHHHHHHCCCCeEEEeCCCceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeEEE
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHHHHH
Q 008389 99 AVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKF 178 (567)
Q Consensus 99 ~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (567)
|+++..+.+.+..+++.+++++++++............... ....++......... ......+|+++
T Consensus 84 ~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~------~~~~~~~~~~~ 150 (513)
T PRK07656 84 PLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATTRLP-------ALEHVVICETEEDDP------HTEKMKTFTDF 150 (513)
T ss_pred ecCcccCHHHHHHHHhhcCceEEEEchhhHHHHHHHHhccC-------CccEEEEEcCccccc------CccccccHHHH
Confidence 99999999999999999999999999887665554332222 334444444332111 01122456666
Q ss_pred HhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhhHHHH-HH
Q 008389 179 LQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTW-SL 257 (567)
Q Consensus 179 l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~-~~ 257 (567)
+...... ....+...+++++++|||||||.||+|.++|.++...+......+++++++++++.+|++|.+|+...+ .+
T Consensus 151 ~~~~~~~-~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (513)
T PRK07656 151 LAAGDPA-ERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGLTEGDRYLAANPFFHVFGYKAGVNAP 229 (513)
T ss_pred HhcCCCC-CCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhhCCCCCCeEEEccchHHHHHHHHHHHHH
Confidence 6543321 122345778999999999999999999999999998888888888999999999999999999987644 44
Q ss_pred hhhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHHHh-cCC-
Q 008389 258 AALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQ-KGF- 335 (567)
Q Consensus 258 ~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~-~~~- 335 (567)
+..|+++++....++..+++.|+++++|++.++|+++..+++........ ++++|.+++||+++++++.+.+.+ +++
T Consensus 230 l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~-~~~l~~v~~~g~~~~~~~~~~~~~~~~~~ 308 (513)
T PRK07656 230 LMRGATILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSAED-LSSLRLAVTGAASMPVALLERFESELGVD 308 (513)
T ss_pred HHcCceEEecCcCCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcCCCC-ccceeeEEecCCCCCHHHHHHHHHHcCCC
Confidence 55666666667789999999999999999999999999999887655544 889999999999999999999884 588
Q ss_pred eeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEeccccccc
Q 008389 336 HVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKG 415 (567)
Q Consensus 336 ~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~~g 415 (567)
++++.||+||++++++.+...... ......+|.|++++ .++|+|++ +++++.| +.|||+++|+.++.|
T Consensus 309 ~~~~~YG~tE~~~~~~~~~~~~~~--------~~~~~~vG~~~~~~-~~~i~d~~-~~~~~~g--~~Gel~v~~~~~~~g 376 (513)
T PRK07656 309 IVLTGYGLSEASGVTTFNRLDDDR--------KTVAGTIGTAIAGV-ENKIVNEL-GEEVPVG--EVGELLVRGPNVMKG 376 (513)
T ss_pred ceEeEEccccCCCceeecCccccc--------cccCCCccccCCCc-EEEEECCC-CCCCCCC--CceEEEEEcchhhhh
Confidence 899999999998887765432211 01136799999999 89999976 8899888 789999999999999
Q ss_pred ccCCCccchhccc-CCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeecCCCCCc
Q 008389 416 YLKNPKANEETFA-NGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGES 494 (567)
Q Consensus 416 y~~~~~~~~~~~~-~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~ 494 (567)
|++++..+...+. +|||+|||+|+++++|.+++.||.+|+|+++|.++++.+||+.+.++++|.+++|++.++...|+.
T Consensus 377 y~~~~~~~~~~~~~~~~~~tGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~ 456 (513)
T PRK07656 377 YYDDPEATAAAIDADGWLHTGDLGRLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEV 456 (513)
T ss_pred hcCCHHHHhhhhccCCceeccceEEEcCCeeEEEEecccceEEeCCEEeCHHHHHHHHHhCCCeeEEEEEecCCcccCce
Confidence 9999888887776 899999999999999999999999999999999999999999999999999999999998888888
Q ss_pred ceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHH
Q 008389 495 PCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRA 554 (567)
Q Consensus 495 ~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~ 554 (567)
+.++++.+++. ..+. +++++++++.|+.+++|..+.+++ +|+|++||++|++|++
T Consensus 457 ~~~~v~~~~~~-~~~~----~~l~~~~~~~l~~~~~p~~i~~v~~iP~t~~gK~~r~~l~~ 512 (513)
T PRK07656 457 GKAYVVLKPGA-ELTE----EELIAYCREHLAKYKVPRSIEFLDELPKNATGKVLKRALRE 512 (513)
T ss_pred EEEEEEECCCC-CCCH----HHHHHHHHhhcccccCCCEEEEecCCCCCCccceeHHHHhc
Confidence 99999887644 3444 678889999999999999999888 9999999999999975
|
|
| >PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-68 Score=556.33 Aligned_cols=507 Identities=25% Similarity=0.337 Sum_probs=424.4
Q ss_pred chhhhcccCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhh
Q 008389 13 NAANYMALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPM 92 (567)
Q Consensus 13 ~~~~~~~~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~ 92 (567)
.+.+.++.|+.++|+++++.+|+++|+++.++++||+||++++.++|..|.+.|+++|++|+++++|++++++++|||++
T Consensus 14 ~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~v~~la~~L~~~gi~~g~~V~v~~~n~~~~~~~~lA~~~ 93 (542)
T PRK06155 14 DPLPPSERTLPAMLARQAERYPDRPLLVFGGTRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAW 93 (542)
T ss_pred ccCCccccCHHHHHHHHHHHCCCCeEEEeCCccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHH
Confidence 44555678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeeeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCCh
Q 008389 93 AGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGA 172 (567)
Q Consensus 93 ~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 172 (567)
+|++++|+++.++.+++.++++.+++++++++.+....+....... .....++.++...... . ...
T Consensus 94 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~------~-~~~ 159 (542)
T PRK06155 94 LGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGD-------LPLPAVWLLDAPASVS------V-PAG 159 (542)
T ss_pred hCCEEEEeccccCHHHHHHHHHhcCceEEEEChhhHHHHHHhcccc-------cCcceEEEecCccccc------c-ccc
Confidence 9999999999999999999999999999999987766554322111 1234455554321100 0 000
Q ss_pred HHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhhH
Q 008389 173 VEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWC 252 (567)
Q Consensus 173 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~ 252 (567)
.....+..... ........++++++++|||||||.||+|.++|+++..........+++++++++++.+|++|..++.
T Consensus 160 ~~~~~~~~~~~--~~~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~~~~ 237 (542)
T PRK06155 160 WSTAPLPPLDA--PAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLEIGADDVLYTTLPLFHTNALN 237 (542)
T ss_pred cchhhhcccCC--CCCCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhcCCCCCCEEEEecCHHHHHHHH
Confidence 00001111111 1111234568999999999999999999999999988877777888999999999999999999998
Q ss_pred HHHHHhhhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHHHh
Q 008389 253 YTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQ 332 (567)
Q Consensus 253 ~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~ 332 (567)
..+..+..|+++++...+++..+++.|+++++|++.++|+++..|.+........ .+++|.++.+| +++.+.+.+.+
T Consensus 238 ~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~-~~~l~~~~~g~--~~~~~~~~~~~ 314 (542)
T PRK06155 238 AFFQALLAGATYVLEPRFSASGFWPAVRRHGATVTYLLGAMVSILLSQPARESDR-AHRVRVALGPG--VPAALHAAFRE 314 (542)
T ss_pred HHHHHHHcCceEEeeCCCCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCccccc-cCceEEEEEcC--CCHHHHHHHHH
Confidence 7788888898888888889999999999999999999999999998876554444 67788766555 57888888874
Q ss_pred -cCCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEecc-
Q 008389 333 -KGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGN- 410 (567)
Q Consensus 333 -~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~- 410 (567)
+++++++.||+||++.++..+.. ....+.+|.+.+++ .++|+|++ +++++.+ +.|||+++|+
T Consensus 315 ~~~~~v~~~YG~tE~~~~~~~~~~------------~~~~~~vG~~~~~~-~~~i~d~~-~~~~~~g--~~Gei~v~~~~ 378 (542)
T PRK06155 315 RFGVDLLDGYGSTETNFVIAVTHG------------SQRPGSMGRLAPGF-EARVVDEH-DQELPDG--EPGELLLRADE 378 (542)
T ss_pred HcCCCEEeeecccccCccccCCCC------------CCCCCCcCccCCCc-eEEEECCC-CCCCCCC--CceEEEEecCC
Confidence 58999999999999876554211 12236789999999 89999977 8899988 7899999998
Q ss_pred --cccccccCCCccchhcccCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeec
Q 008389 411 --VVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARAD 488 (567)
Q Consensus 411 --~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~ 488 (567)
.++.||+++++.+...|.++||+|||+|++++||.+++.||.+|+|+++|.+++|.+||+++.++++|.+++|++.++
T Consensus 379 ~~~~~~GY~~~~~~~~~~~~~~~~~TGD~~~~~~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~v~~ 458 (542)
T PRK06155 379 PFAFATGYFGMPEKTVEAWRNLWFHTGDRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVLLSHPAVAAAAVFPVPS 458 (542)
T ss_pred ccccchhhcCCHHHHHHhhcCCcEeccceEEEcCCceEEEEecCCCEEEeCCEEECHHHHHHHHHhCCCeeEEEEEeecc
Confidence 699999999999988899999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHHHHc
Q 008389 489 ERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKEM 559 (567)
Q Consensus 489 ~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~ 559 (567)
+..++.+.+++++..+. ..+. .+++++++++++.+++|..+.+++ +|+|++||++|++|++++...
T Consensus 459 ~~~~~~~~~~v~~~~~~-~~~~----~~~~~~~~~~l~~~~~P~~i~~~~~iP~t~~GKi~r~~l~~~~~~~ 525 (542)
T PRK06155 459 ELGEDEVMAAVVLRDGT-ALEP----VALVRHCEPRLAYFAVPRYVEFVAALPKTENGKVQKFVLREQGVTA 525 (542)
T ss_pred cccCceEEEEEEECCCC-CCCH----HHHHHHHHhhCcCccCCcEEEEeccCCCCcccceeHHHHHhhccCC
Confidence 88788888888887655 4444 678999999999999999999888 999999999999999987543
|
|
| >PRK05857 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-68 Score=560.08 Aligned_cols=516 Identities=22% Similarity=0.276 Sum_probs=411.2
Q ss_pred hhhhcccCHHHHHhhhhhcCCCceeEEECC--ccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhh
Q 008389 14 AANYMALTPLWFLDRAATVHPTRTSVVHGS--TRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVP 91 (567)
Q Consensus 14 ~~~~~~~t~~~~l~~~a~~~p~~~a~~~~~--~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~ 91 (567)
++.--+.|+.+.|.+.|+++|+++|+++.+ ..+||+||++++.++|+.|.+.|+++||+|+++++|++++++++|||+
T Consensus 8 ~~~~~~~~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~e~~~~~lA~~ 87 (540)
T PRK05857 8 AMPQLPSTVLDRVFEQARQQPEAIALRRCDGTSALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSVLACA 87 (540)
T ss_pred ccccCCcchHHHHHHHHhhCCCcEEEeecCCCceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCCHHHHHHHHHHH
Confidence 333445699999999999999999998643 689999999999999999999999999999999999999999999999
Q ss_pred hcCCeeeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCC
Q 008389 92 MAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRG 171 (567)
Q Consensus 92 ~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 171 (567)
++|++++|+++.++.+++.++++.++++++|++.............. ....++.++.... ..
T Consensus 88 ~~G~v~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~-~~--------- 149 (540)
T PRK05857 88 KLGAIAVMADGNLPIAAIERFCQITDPAAALVAPGSKMASSAVPEAL--------HSIPVIAVDIAAV-TR--------- 149 (540)
T ss_pred HcCeEEEecCccCCHHHHHHHHHhcCCceEEEeccchhccccccccc--------cccceeEeecccc-cc---------
Confidence 99999999999999999999999999999999887532211111111 1112233322110 00
Q ss_pred hHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHH----HHhccCCCcEEEEecCccc
Q 008389 172 AVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVA----LIWGMNEGAVYLWTLPMFH 247 (567)
Q Consensus 172 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~----~~~~~~~~d~~~~~~p~~~ 247 (567)
.+...+..... ........+++++++|||||||.||+|.++|+++.++..... ..+.+..+++++..+|++|
T Consensus 150 --~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h 225 (540)
T PRK05857 150 --ESEHSLDAASL--AGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWVTWVVGETTYSPLPATH 225 (540)
T ss_pred --ccccccccccc--ccccCCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhccccccccccCceeeecCCccc
Confidence 00000000000 011234668999999999999999999999999987654332 2245667889999999999
Q ss_pred hhhhHHHHHHhhhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHH
Q 008389 248 CNGWCYTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVL 327 (567)
Q Consensus 248 ~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~ 327 (567)
..++...+.++..|++++ +...++..+++.|+++++|.+.++|+++..+.+........ ++++|.+++||++++....
T Consensus 226 ~~~l~~~~~~l~~G~~~v-~~~~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~~~~-~~~lr~~~~gG~~~~~~~~ 303 (540)
T PRK05857 226 IGGLWWILTCLMHGGLCV-TGGENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSANAT-VPSLRLVGYGGSRAIAADV 303 (540)
T ss_pred cchHHHHHHHhhcceeEE-ecCCChhHHHHHHHhcCcceEEeChHHHHHHHhccccCCCc-CccceEEEEcCccCCchhH
Confidence 999988788888888765 45678899999999999999999999999998876544444 8899999999999988887
Q ss_pred HHHHhcCCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCC---CCCceEE
Q 008389 328 HAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPA---DGKTIGE 404 (567)
Q Consensus 328 ~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~---~~~~~Ge 404 (567)
+++...++++++.||+||++.....+..... .......+++|.|++++ +++|+|++...+++. ..++.||
T Consensus 304 ~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~------~~~~~~~~~~G~~~~g~-~v~i~d~~~~~~~~~~~~~~~~~Ge 376 (540)
T PRK05857 304 RFIEATGVRTAQVYGLSETGCTALCLPTDDG------SIVKIEAGAVGRPYPGV-DVYLAATDGIGPTAPGAGPSASFGT 376 (540)
T ss_pred HHHHHhCCeeecccCCCcCCceeeecccccc------cccccccCCcCcccCCc-EEEEECccccCccccccCCCCCcce
Confidence 7666679999999999998754332211100 00111246899999999 899999874434432 1237899
Q ss_pred EEEecccccccccCCCccchhcccCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEE
Q 008389 405 IVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVV 484 (567)
Q Consensus 405 i~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~ 484 (567)
|+++|+.++.||+++++.+.+.|.+|||+|||+|+++++|++++.||.+|+|+++|.+|+|.+||.++..+|+|.+++|+
T Consensus 377 l~v~g~~~~~GY~~~~~~t~~~~~~g~~~TGDlg~~d~~g~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~~~~V~~~~v~ 456 (540)
T PRK05857 377 LWIKSPANMLGYWNNPERTAEVLIDGWVNTGDLLERREDGFFYIKGRSSEMIICGGVNIAPDEVDRIAEGVSGVREAACY 456 (540)
T ss_pred EEEeCcchhhhhhCCccchhhhcCCCceeccceEEEcCCceEEEeccccccEecCCEEECHHHHHHHHHhCCCeeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHHHHcC
Q 008389 485 ARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKEMG 560 (567)
Q Consensus 485 ~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~ 560 (567)
+.++...++.+.++++..++......+++.+.+.+.+++.++++++|..+.+++ +|+|++||++|+.|++.+++..
T Consensus 457 ~~~~~~~~~~~~~~vv~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~P~~v~~~~~iP~t~~GKi~r~~l~~~~~~~~ 533 (540)
T PRK05857 457 EIPDEEFGALVGLAVVASAELDESAARALKHTIAARFRRESEPMARPSTIVIVTDIPRTQSGKVMRASLAAAATADK 533 (540)
T ss_pred ecCccccccceEEEEEeCCCCChhhHHHHHHHHHHHHHhhhccccCCeEEEEhhcCCCCCCcceeHHHHHHhhhhcc
Confidence 999888788888888876654333345566777888888999999999999888 9999999999999999988653
|
|
| >PLN02246 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-67 Score=556.17 Aligned_cols=504 Identities=26% Similarity=0.360 Sum_probs=423.0
Q ss_pred ccCHHHHHhhhhhcCCCceeEEEC--CccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCe
Q 008389 19 ALTPLWFLDRAATVHPTRTSVVHG--STRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAV 96 (567)
Q Consensus 19 ~~t~~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~ 96 (567)
.+|+.+++.+.+.++|+++|+++. ++++||.||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|++
T Consensus 22 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~la~~~~G~~ 101 (537)
T PLN02246 22 HLPLHDYCFERLSEFSDRPCLIDGATGRVYTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAV 101 (537)
T ss_pred CCcHHHHHHHHHHhCCCCeEEEecCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHHcCEE
Confidence 468999999999999999999985 478999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHHH
Q 008389 97 LNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYE 176 (567)
Q Consensus 97 ~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 176 (567)
++|+++.++.+++..+++.++++++|++....+.+...... ....++.++... .....+.
T Consensus 102 ~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~---------~~~~~i~~~~~~-----------~~~~~~~ 161 (537)
T PLN02246 102 TTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKLKGLAED---------DGVTVVTIDDPP-----------EGCLHFS 161 (537)
T ss_pred EecCCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHHhhc---------CCceEEEeCCCC-----------CCceeHH
Confidence 99999999999999999999999999998876655443210 112344444321 1123344
Q ss_pred HHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHH----HhccCCCcEEEEecCccchhhhH
Q 008389 177 KFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVAL----IWGMNEGAVYLWTLPMFHCNGWC 252 (567)
Q Consensus 177 ~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~----~~~~~~~d~~~~~~p~~~~~g~~ 252 (567)
++........ +.....++++++++|||||||.||+|.++|+++......... .+++.++|++++.+|++|.+++.
T Consensus 162 ~~~~~~~~~~-~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~ 240 (537)
T PLN02246 162 ELTQADENEL-PEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYSLN 240 (537)
T ss_pred HHhcCCCCCC-CCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccccccCCCCCcEEEEeechHHHHHHH
Confidence 4444322221 122346789999999999999999999999999887665433 46788999999999999999986
Q ss_pred HHH-HHhhhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHHH
Q 008389 253 YTW-SLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMS 331 (567)
Q Consensus 253 ~~~-~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~ 331 (567)
..+ ..+..|+++++...+++..+++.|+++++|++.++|+++..|++........ ++++|.+++||+++++++.+.+.
T Consensus 241 ~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~-~~~lr~~~~gg~~l~~~~~~~~~ 319 (537)
T PLN02246 241 SVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVVEKYD-LSSIRMVLSGAAPLGKELEDAFR 319 (537)
T ss_pred HHHHHHHhcCCEEEEeCCCCHHHHHHHHHHhCceEEEcchHHHHHHhcCccccccC-ccceeEEEEecCcCCHHHHHHHH
Confidence 544 4556678887888889999999999999999999999999998766544444 78999999999999999999998
Q ss_pred hc--CCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEec
Q 008389 332 QK--GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSG 409 (567)
Q Consensus 332 ~~--~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~ 409 (567)
+. ++.+++.||+||++.+++.+..... .......+++|.|++++ .++|+|++++.+++.| +.|||+++|
T Consensus 320 ~~~~~~~~~~~YG~tE~~~~~~~~~~~~~------~~~~~~~~~~G~~~~~~-~~~i~d~~~~~~~~~g--~~Gel~v~g 390 (537)
T PLN02246 320 AKLPNAVLGQGYGMTEAGPVLAMCLAFAK------EPFPVKSGSCGTVVRNA-ELKIVDPETGASLPRN--QPGEICIRG 390 (537)
T ss_pred HHcCCCeEeccccccccCcccccccccCC------CCccccCCccccccCCc-EEEEecCCCCCcCCCC--CceEEEEEC
Confidence 64 6789999999999766554321100 00112236789999999 8999998889999988 789999999
Q ss_pred ccccccccCCCccchhcc-cCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeec
Q 008389 410 NVVMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARAD 488 (567)
Q Consensus 410 ~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~ 488 (567)
+.++.||+++++.+...| .+|||+|||+|+++++|++++.||.+|+|+.+|.+|+|.+||+.+.++|+|.+++|++.++
T Consensus 391 ~~~~~GY~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~dd~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~ 470 (537)
T PLN02246 391 PQIMKGYLNDPEATANTIDKDGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLISHPSIADAAVVPMKD 470 (537)
T ss_pred CchhccccCCchhhhhcccCCCCeeecceEEEeCCCeEEEEecccceEEECCEEECcHHHHHHHHhCCCeeEEEEEcccC
Confidence 999999999999988887 5899999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHHHH
Q 008389 489 ERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKE 558 (567)
Q Consensus 489 ~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~ 558 (567)
...++.++++++..++. ..+. ++++++++++++.++.|..+.+++ +|+|++||++|++|++++.+
T Consensus 471 ~~~~~~~~~~v~~~~~~-~~~~----~~l~~~l~~~l~~~~~p~~i~~~~~~P~t~~GKi~r~~L~~~~~~ 536 (537)
T PLN02246 471 EVAGEVPVAFVVRSNGS-EITE----DEIKQFVAKQVVFYKRIHKVFFVDSIPKAPSGKILRKDLRAKLAA 536 (537)
T ss_pred ccCCceeEEEEEeCCCC-CCCH----HHHHHHHHhhCcCccccceEEEeccCCCCCcchhhHHHHHHHHhc
Confidence 88888999999887664 3334 688999999999999999998887 99999999999999998754
|
|
| >PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-68 Score=550.96 Aligned_cols=480 Identities=27% Similarity=0.435 Sum_probs=414.2
Q ss_pred cCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCeeee
Q 008389 20 LTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNA 99 (567)
Q Consensus 20 ~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~ 99 (567)
+|+.++|++++.++||++|+++.++.+||+||++++.++|+.|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus 2 ~~~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~ 81 (483)
T PRK03640 2 ETMPNWLKQRAFLTPDRTAIEFEEKKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVL 81 (483)
T ss_pred CcHHHHHHHHHHhCCCceEEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhCCcEEEe
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHHHHHH
Q 008389 100 VNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFL 179 (567)
Q Consensus 100 i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l 179 (567)
+++..+.+++..+++.++++.++++.+........ .. ..++++.
T Consensus 82 i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~--------------~~----------------------~~~~~~~ 125 (483)
T PRK03640 82 LNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPG--------------IS----------------------VKFAELM 125 (483)
T ss_pred cCcCCCHHHHHHHHHhCCCCEEEEcchhhHHHhhh--------------cc----------------------ccHHHHh
Confidence 99999999999999999999999987654432211 00 0122222
Q ss_pred hcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhhHHHHHHhh
Q 008389 180 QTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAA 259 (567)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~ 259 (567)
...............+++++++|||||||.||+|.++|.++...+......++++++|++++.+|++|++|+...+..+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~ 205 (483)
T PRK03640 126 NGPKEEAEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNLGLTEDDCWLAAVPIFHISGLSILMRSVI 205 (483)
T ss_pred hcccccCCCCCCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhcCCCcCcEEEEecCHHHHHHHHHHHHHHh
Confidence 22111111222345678999999999999999999999999888777777789999999999999999999988788888
Q ss_pred hcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHHHhcCCeeee
Q 008389 260 LCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQKGFHVTH 339 (567)
Q Consensus 260 ~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~i~~ 339 (567)
.|+++++....++..+++.++++++|++.++|+++..+.+...... . ..++|.++++|+++++...+.+.+.++++++
T Consensus 206 ~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~-~-~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~ 283 (483)
T PRK03640 206 YGMRVVLVEKFDAEKINKLLQTGGVTIISVVSTMLQRLLERLGEGT-Y-PSSFRCMLLGGGPAPKPLLEQCKEKGIPVYQ 283 (483)
T ss_pred cCCEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCccc-c-CCcceEEEEcCCCCCHHHHHHHHHhCCCeee
Confidence 8999888888999999999999999999999999999987654332 2 5689999999999999999999888999999
Q ss_pred ccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEecccccccccCC
Q 008389 340 TYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKN 419 (567)
Q Consensus 340 ~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~ 419 (567)
.||+||++..+...... ......+.+|.|++++ .++|.++ +++++.+ +.|||+++|+.++.||+++
T Consensus 284 ~YG~tE~~~~~~~~~~~---------~~~~~~~~vG~p~~~~-~~~i~~~--~~~~~~g--~~Gel~v~g~~~~~gy~~~ 349 (483)
T PRK03640 284 SYGMTETASQIVTLSPE---------DALTKLGSAGKPLFPC-ELKIEKD--GVVVPPF--EEGEIVVKGPNVTKGYLNR 349 (483)
T ss_pred eeccCcccccccccCcc---------cccccCCCcccccCCc-EEEEecC--CCcCCCC--CceEEEEECcchhhhhcCC
Confidence 99999987544332211 1122347899999999 8999885 4677777 7899999999999999999
Q ss_pred CccchhcccCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeecCCCCCcceEEE
Q 008389 420 PKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFV 499 (567)
Q Consensus 420 ~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v 499 (567)
++.+...|.+|||+|||++++++||.+++.||.+|+++.+|.++++.+||..+.++++|.++++++.+++..++.+++++
T Consensus 350 ~~~~~~~~~~~~~~tGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~~ 429 (483)
T PRK03640 350 EDATRETFQDGWFKTGDIGYLDEEGFLYVLDRRSDLIISGGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFV 429 (483)
T ss_pred HHHHHHHHhcCCeeccceEEEcCCCCEEEeecccCeEEeCCEEECHHHHHHHHHhCCCeeEEEEEeCCCcccCCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888788888888
Q ss_pred EEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHHHH
Q 008389 500 TLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKE 558 (567)
Q Consensus 500 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~ 558 (567)
+.... .+. ++++++++++|+++.+|..+++++ +|+|++||++|++|++++++
T Consensus 430 ~~~~~---~~~----~~l~~~~~~~l~~~~~p~~i~~~~~iP~t~~gK~~r~~l~~~~~~ 482 (483)
T PRK03640 430 VKSGE---VTE----EELRHFCEEKLAKYKVPKRFYFVEELPRNASGKLLRHELKQLVEE 482 (483)
T ss_pred EeCCC---CCH----HHHHHHHHHhccCCCCCcEEEEeCCCCCCCccceeHHHHHHHHhh
Confidence 75443 333 678899999999999999999888 99999999999999999875
|
|
| >PRK07008 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-67 Score=554.10 Aligned_cols=521 Identities=29% Similarity=0.502 Sum_probs=425.2
Q ss_pred cccCHHHHHhhhhhcCCCceeEEEC--C--ccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhc
Q 008389 18 MALTPLWFLDRAATVHPTRTSVVHG--S--TRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMA 93 (567)
Q Consensus 18 ~~~t~~~~l~~~a~~~p~~~a~~~~--~--~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~ 93 (567)
.+.++.++|++++..+|++.++.+. + +++||.||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++
T Consensus 8 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~~~~~~~~~~~~la~~~~ 87 (539)
T PRK07008 8 MPLLISSLIAHAARHAGDTEIVSRRVEGDIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGS 87 (539)
T ss_pred CCCCHHHHHHHHHhhCCCceEEEeeccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhc
Confidence 4568999999999999999998752 2 68999999999999999999999999999999999999999999999999
Q ss_pred CCeeeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChH
Q 008389 94 GAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAV 173 (567)
Q Consensus 94 G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 173 (567)
|++++|+++.++.+++..+++.+++++++++.+..+.+.+...... ....++.+........ ...+..
T Consensus 88 G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~-----~~~~~~ 155 (539)
T PRK07008 88 GAVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDALAPQCP-------NVKGWVAMTDAAHLPA-----GSTPLL 155 (539)
T ss_pred CcEEeecccccCHHHHHHHHhccCCcEEEEcchhHHHHHHHHhhCC-------CceEEEEEccCCcccc-----CCcccc
Confidence 9999999999999999999999999999999887665544332222 2333444433211000 112345
Q ss_pred HHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHH--HHHHHhccCCCcEEEEecCccchhhh
Q 008389 174 EYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSL--SVALIWGMNEGAVYLWTLPMFHCNGW 251 (567)
Q Consensus 174 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~--~~~~~~~~~~~d~~~~~~p~~~~~g~ 251 (567)
.+++++........+ ....++++++++|||||||.||+|.+||+++..+.. .....++++++|+++...|++|.+++
T Consensus 156 ~~~~l~~~~~~~~~~-~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~ 234 (539)
T PRK07008 156 CYETLVGAQDGDYDW-PRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARDAVLPVVPMFHVNAW 234 (539)
T ss_pred cHHHHhcccCCCcCc-ccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhcccccCCCCCceEEecCchHHhhhH
Confidence 566766544332222 234567899999999999999999999999865432 23345678899999999999998888
Q ss_pred HHHHHHhhhcCeeEEec-cCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHH
Q 008389 252 CYTWSLAALCGTSICLR-QVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAM 330 (567)
Q Consensus 252 ~~~~~~~~~g~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~ 330 (567)
...+..+..|+++++.. .+++..+++.++++++|++.++|+.+..+++........ ++++|.++++|+++++.+.+++
T Consensus 235 ~~~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~-~~~l~~~~~~G~~l~~~~~~~~ 313 (539)
T PRK07008 235 GLPYSAPLTGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREAGLR-FSTLRRTVIGGSACPPAMIRTF 313 (539)
T ss_pred HHHHHHHhcCceEEEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhcccccCCC-cccceEEEEcCCCCCHHHHHHH
Confidence 77677777888877763 578999999999999999999999999999876555444 8899999999999999999999
Q ss_pred H-hcCCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEec
Q 008389 331 S-QKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSG 409 (567)
Q Consensus 331 ~-~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~ 409 (567)
. .+++++++.||+||++..++.+.........+..........+|.|+|++ .++|+|++ +++++.++.+.|||+++|
T Consensus 314 ~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~pg~-~~~i~d~~-~~~~~~~~~~~Gei~v~g 391 (539)
T PRK07008 314 EDEYGVEVIHAWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGV-DMKIVGDD-GRELPWDGKAFGDLQVRG 391 (539)
T ss_pred HHHhCCceecccccccccccceecccccccccCCchhhhhhcccCCccccce-EEEEECCC-CCccCCCCCcceEEEEeC
Confidence 7 45999999999999987665443221111111111122346789999999 89999976 888887654689999999
Q ss_pred ccccccccCCCccchhcccCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeecC
Q 008389 410 NVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADE 489 (567)
Q Consensus 410 ~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~ 489 (567)
+.++.||++++. ..+.+|||+|||+|++++||++++.||++|+|+.+|.+++|.+||..+..+|.|.++++++.++.
T Consensus 392 ~~~~~gy~~~~~---~~~~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~v~~~~v~~~~~~ 468 (539)
T PRK07008 392 PWVIDRYFRGDA---SPLVDGWFPTGDVATIDADGFMQITDRSKDVIKSGGEWISSIDIENVAVAHPAVAEAACIACAHP 468 (539)
T ss_pred CccchhhcCChh---hhhcCCCcccCceEEEcCCCcEEEeecccCEEEeCCeEEcHHHHHHHHHhCCceeEEEEEecCCc
Confidence 999999999873 34558999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHHHHcCCc
Q 008389 490 RWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKEMGPV 562 (567)
Q Consensus 490 ~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~~~ 562 (567)
..++.++++|+..++. ..+. ++++++++++++++..|..+++++ +|+|++||++|++|++++.+-.+.
T Consensus 469 ~~~~~~~~~v~~~~~~-~~~~----~~l~~~~~~~l~~~~~P~~i~~v~~lP~t~sgKi~r~~l~~~~~~~~~~ 537 (539)
T PRK07008 469 KWDERPLLVVVKRPGA-EVTR----EELLAFYEGKVAKWWIPDDVVFVDAIPHTATGKLQKLKLREQFRDYVLP 537 (539)
T ss_pred hhccceEEEEEeCCCC-ccCH----HHHHHHHHhhcccccCCeEEEEecCCCCCCccceeHHHHHHHHHhhccc
Confidence 8788899998877654 3344 688999999999999999999887 999999999999999999886543
|
|
| >PRK03584 acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-67 Score=565.48 Aligned_cols=511 Identities=20% Similarity=0.228 Sum_probs=404.1
Q ss_pred CHHHHHhhhhhcCCCceeEEECC-----ccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCC
Q 008389 21 TPLWFLDRAATVHPTRTSVVHGS-----TRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGA 95 (567)
Q Consensus 21 t~~~~l~~~a~~~p~~~a~~~~~-----~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~ 95 (567)
++.+.+.++ .+|+++|+++.+ +++||+||.+++.++|+.|++.|+++||+|+++++|++++++++|||+++|+
T Consensus 87 n~~~~~~~~--~~~~~~Al~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~v~~~lA~~~~Ga 164 (655)
T PRK03584 87 NYAENLLRH--RRDDRPAIIFRGEDGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLATASLGA 164 (655)
T ss_pred eHHHHhhcc--CCCCCeEEEEECCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCc
Confidence 444444332 589999999854 6899999999999999999999999999999999999999999999999999
Q ss_pred eeeeccccCChHHHHHHHhccCceEEEEcccch---------HHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchh
Q 008389 96 VLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYF---------KLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKY 166 (567)
Q Consensus 96 ~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 166 (567)
+++|+++.++.+++.++++.++++++|+++... +.+.+....++ ....++.+....... ..
T Consensus 165 v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~---~~ 234 (655)
T PRK03584 165 IWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALP-------SLEHVVVVPYLGPAA---AA 234 (655)
T ss_pred EEEeeCCCCCHHHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHHhcCC-------CccEEEEEecCCCcc---cc
Confidence 999999999999999999999999999987532 22222222111 334555554321100 00
Q ss_pred ccCCChHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHH-HHHHHHHhccCCCcEEEEecCc
Q 008389 167 ALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLM-SLSVALIWGMNEGAVYLWTLPM 245 (567)
Q Consensus 167 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~-~~~~~~~~~~~~~d~~~~~~p~ 245 (567)
........|++++...........+...+++++|+|||||||.||||+++|++++.+ .......+++.++|++++..++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 314 (655)
T PRK03584 235 AALPGALLWEDFLAPAEAAELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHCDLGPGDRFFWYTTC 314 (655)
T ss_pred cccCCcccHHHHhhccccCCCCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhcCCCCCCEEEEcCCc
Confidence 011233456666652222111223356689999999999999999999999987644 4445566789999999999998
Q ss_pred cchhhhHHHHHHhhhcCeeEEecc----CCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCC--CCcCCCCchhhhhccC
Q 008389 246 FHCNGWCYTWSLAALCGTSICLRQ----VTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSE--DTILPLPHVVHVNTAG 319 (567)
Q Consensus 246 ~~~~g~~~~~~~~~~g~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~--~~~~~l~~lr~i~~~G 319 (567)
.|+.+ ...+..++.|+++++... +++..+++.++++++|++.++|+++..+.+.... ...+ +++||.++++|
T Consensus 315 ~~~~~-~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~-l~sLr~i~~~G 392 (655)
T PRK03584 315 GWMMW-NWLVSGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGLVPGETHD-LSALRTIGSTG 392 (655)
T ss_pred hHHhH-HHHHHHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCCCccccCC-hhheEEEEEec
Confidence 88654 334566778888887642 5789999999999999999999999999864321 2233 88999999999
Q ss_pred CCCCHHHHHHHHhc---CCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccC
Q 008389 320 AAPPPSVLHAMSQK---GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVP 396 (567)
Q Consensus 320 ~~l~~~~~~~~~~~---~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~ 396 (567)
+++++++.+++.+. +..+.+.||+||+++....... ......+++|.|.+++ +++|+|++ |+++
T Consensus 393 e~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~----------~~~~~~g~~g~p~~g~-~~~ivd~~-g~~~- 459 (655)
T PRK03584 393 SPLPPEGFDWVYEHVKADVWLASISGGTDICSCFVGGNP----------LLPVYRGEIQCRGLGM-AVEAWDED-GRPV- 459 (655)
T ss_pred CCCCHHHHHHHHHHhCCCceEEeccChHhhhcccccCCC----------CCCcCCCccCCCcCCc-eeEEECCC-CCCC-
Confidence 99999999999854 5789999999998654332110 0012347789999999 89999977 7777
Q ss_pred CCCCceEEEEEecc--cccccccCCCccch--hc-c--cCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHH
Q 008389 397 ADGKTIGEIVMSGN--VVMKGYLKNPKANE--ET-F--ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVE 469 (567)
Q Consensus 397 ~~~~~~Gei~v~~~--~~~~gy~~~~~~~~--~~-~--~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE 469 (567)
.+ +.|||+++|+ .++.|||++++.+. .. | .+|||+|||+|++|+||+++++||.||+||++|.+|+|.|||
T Consensus 460 ~g--~~GeL~v~gp~p~~~~gy~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~Ik~~G~rI~p~EIE 537 (655)
T PRK03584 460 VG--EVGELVCTKPFPSMPLGFWNDPDGSRYRDAYFDTFPGVWRHGDWIEITEHGGVVIYGRSDATLNRGGVRIGTAEIY 537 (655)
T ss_pred CC--CceEEEEccCCCCCcceeeCCCccchHHHhhhccCCCEeecCCeEEECCCCeEEEEeeccCeeecCcEEECHHHHH
Confidence 55 7899999996 78999999987543 11 2 257899999999999999999999999999999999999999
Q ss_pred HHHhcCCCceeeEEEEeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCcccc
Q 008389 470 NMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQ 548 (567)
Q Consensus 470 ~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~ 548 (567)
.+|.+||.|.+++|++.+++..|+.++++|+++++. .. .+++.++|+++++++|+.++.|..|++++ ||+|++||++
T Consensus 538 ~~l~~~p~V~ea~vvg~~~~~~g~~~~a~vv~~~~~-~~-~~~~~~~l~~~~~~~L~~~~~P~~i~~v~~lP~t~sGKi~ 615 (655)
T PRK03584 538 RQVEALPEVLDSLVIGQEWPDGDVRMPLFVVLAEGV-TL-DDALRARIRTTIRTNLSPRHVPDKIIAVPDIPRTLSGKKV 615 (655)
T ss_pred HHHHhCCCcceEEEEeeEcCCCCEEEEEEEEECCCC-CC-cHHHHHHHHHHHHhhCCCCcCCCEEEECCCCCCCCCccch
Confidence 999999999999999999988899999999998765 22 23455789999999999999999999988 9999999999
Q ss_pred HHHHHHHHHHcCCc
Q 008389 549 KHVLRAKAKEMGPV 562 (567)
Q Consensus 549 r~~l~~~~~~~~~~ 562 (567)
|+.||+++......
T Consensus 616 r~~lr~~~~~~~~~ 629 (655)
T PRK03584 616 ELPVKKLLHGRPVK 629 (655)
T ss_pred HHHHHHHHcCCCCC
Confidence 99999998765433
|
|
| >PRK09274 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-68 Score=559.11 Aligned_cols=510 Identities=22% Similarity=0.295 Sum_probs=399.8
Q ss_pred cccCHHHHHhhhhhcCCCceeEEECCc----------cccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHH
Q 008389 18 MALTPLWFLDRAATVHPTRTSVVHGST----------RYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAH 87 (567)
Q Consensus 18 ~~~t~~~~l~~~a~~~p~~~a~~~~~~----------~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~ 87 (567)
+.+|+.++|++.++++|+++|+++.+. ++||+||.+++.++|+.|.+.|+++||+|+++++|++++++++
T Consensus 4 ~~~~~~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~~~~ 83 (552)
T PRK09274 4 SMANIARHLPRAAQERPDQLAVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFALT 83 (552)
T ss_pred hhhhHHHHHHHHHHhCCCcceEEeccCCCCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcHHHHHHH
Confidence 457889999999999999999998654 8999999999999999999999999999999999999999999
Q ss_pred HhhhhcCCeeeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhc
Q 008389 88 FGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYA 167 (567)
Q Consensus 88 lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 167 (567)
|||+++|++++|++|.++.+++.++++.++++++|++.+. ..... ..... ......++.++...
T Consensus 84 la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~-~~~~~-~~~~~-----~~~~~~~i~~~~~~--------- 147 (552)
T PRK09274 84 FALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKA-HLARR-LFGWG-----KPSVRRLVTVGGRL--------- 147 (552)
T ss_pred HHHHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHH-HHHHH-HhccC-----ccchhheecccccc---------
Confidence 9999999999999999999999999999999999987531 11111 00000 00122233332210
Q ss_pred cCCChHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccc
Q 008389 168 LGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFH 247 (567)
Q Consensus 168 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~ 247 (567)
......+.++...............++++++++|||||||.||+|.++|+++...+......+++.++++.++.+|++|
T Consensus 148 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~~ 226 (552)
T PRK09274 148 -LWGGTTLATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYGIEPGEIDLPTFPLFA 226 (552)
T ss_pred -ccCCccHHHhcccCccccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHhCCCCCceeeeccCHHH
Confidence 0111234444322111111122345689999999999999999999999999998888888889999999999999877
Q ss_pred hhhhHHHHHHhhhcCeeEEec-------cCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCC
Q 008389 248 CNGWCYTWSLAALCGTSICLR-------QVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGA 320 (567)
Q Consensus 248 ~~g~~~~~~~~~~g~~~~~~~-------~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~ 320 (567)
.+++ ..|++.++.. .+++..+++.|+++++|+++++|+++..|.+........ ++++|.+++||+
T Consensus 227 ~~~~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~-~~~lr~~~~gG~ 298 (552)
T PRK09274 227 LFGP-------ALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEANGIK-LPSLRRVISAGA 298 (552)
T ss_pred hhhh-------hhCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhcCCC-CchhhEEEecCC
Confidence 5543 3466665542 357899999999999999999999999999865544444 889999999999
Q ss_pred CCCHHHHHHHHhc---CCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCC-------
Q 008389 321 APPPSVLHAMSQK---GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTR------- 390 (567)
Q Consensus 321 ~l~~~~~~~~~~~---~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~------- 390 (567)
++++++.+++.+. ++++++.||+||++++++......... ...........++|.|+|++ +++|+|+.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~-~~~~~~~~~~~~vG~~~~~~-~~~ivd~~~~~~~~~ 376 (552)
T PRK09274 299 PVPIAVIERFRAMLPPDAEILTPYGATEALPISSIESREILFA-TRAATDNGAGICVGRPVDGV-EVRIIAISDAPIPEW 376 (552)
T ss_pred cCCHHHHHHHHHHcCCCceEEccccccccceeEeecchhhhcc-ccccccCCCCcccCccCCCc-eEEEEeccccccccc
Confidence 9999999999864 579999999999976554322110000 00000011124689999999 89999863
Q ss_pred -CCCccCCCCCceEEEEEecccccccccCCCccchhcc---cCC--ccccCceEEEeCCCcEEEeccccceeeeCceecc
Q 008389 391 -TQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETF---ANG--WYHTGDLGVKHPDNYIEIKDRSKDIIISGGENIS 464 (567)
Q Consensus 391 -~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~---~~g--~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~ 464 (567)
++++++.| +.|||+++|+.++.||+++++.+...| .+| ||+|||+|++++||++++.||.+|+|+++|.+|+
T Consensus 377 ~~~~~~~~g--~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~ 454 (552)
T PRK09274 377 DDALRLATG--EIGEIVVAGPMVTRSYYNRPEATRLAKIPDGQGDVWHRMGDLGYLDAQGRLWFCGRKAHRVETAGGTLY 454 (552)
T ss_pred cccccCCCC--CeeEEEEecCcccccccCChHHhhhhhcccCCCCcEEEcCCEEEEccCCcEEEEeccCCeEEECCEEEC
Confidence 35677777 889999999999999999998887765 356 9999999999999999999999999999999999
Q ss_pred hHHHHHHHhcCCCceeeEEEEeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCC-
Q 008389 465 SVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKT- 542 (567)
Q Consensus 465 ~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t- 542 (567)
|.+||++|.++|+|.+++|++.+++. ++.++++|++.++. ..+.+++.+++++++.+ ++.+..|..+.+++ ||+|
T Consensus 455 p~eIE~~l~~~p~V~~~~v~~~~~~~-~~~~~~~v~~~~~~-~~~~~~l~~~l~~~l~~-~~~~~~~~~~~~~~~lP~t~ 531 (552)
T PRK09274 455 TIPCERIFNTHPGVKRSALVGVGVPG-AQRPVLCVELEPGV-ACSKSALYQELRALAAA-HPHTAGIERFLIHPSFPVDI 531 (552)
T ss_pred cHHHHHHHHhCcccceeEEEEeCCCC-CceEEEEEEccCcc-ccchHHHhhhhHHHHHh-cCCCcceeEEeccCCCCccc
Confidence 99999999999999999999998764 67888999888775 34444455555555544 34556778888888 9999
Q ss_pred -CCccccHHHHHHHHHHc
Q 008389 543 -ATGKIQKHVLRAKAKEM 559 (567)
Q Consensus 543 -~~GKi~r~~l~~~~~~~ 559 (567)
++||++|++|++++.+.
T Consensus 532 ~~~GKi~r~~L~~~~~~~ 549 (552)
T PRK09274 532 RHNAKIFREKLAVWAAKQ 549 (552)
T ss_pred cccccccHHHHHHHHHHh
Confidence 79999999999987765
|
|
| >PRK07786 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-67 Score=553.36 Aligned_cols=510 Identities=27% Similarity=0.408 Sum_probs=432.2
Q ss_pred ccCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCeee
Q 008389 19 ALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLN 98 (567)
Q Consensus 19 ~~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v 98 (567)
.+++.+.+.++++.+|+++|+.+.++.+||.||.++++++|..|.+.|+++||+|+++++|+++++++++||+++|++++
T Consensus 16 ~~n~~~~~~~~a~~~~~~~a~~~~~~~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~~a~~~~G~~~v 95 (542)
T PRK07786 16 RQNWVNQLARHALMQPDAPALRFLGNTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAV 95 (542)
T ss_pred ccCHHHHHHHHHHHCCCCeEEEeCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEE
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHHHHH
Q 008389 99 AVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKF 178 (567)
Q Consensus 99 ~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (567)
|+++..+.+++.++++.+++++++++....+.+.......+ ....++.+.+.. .....+++++
T Consensus 96 pl~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~----------~~~~~~~~~~ 158 (542)
T PRK07786 96 PVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATAVRDIVP-------LLSTVVVAGGSS----------DDSVLGYEDL 158 (542)
T ss_pred EcCccCCHHHHHHHHHhCCCcEEEEccchHHHHHHhhhccC-------ccceEEEecCCC----------cccccCHHHH
Confidence 99999999999999999999999999876655543322111 334455444321 1122455666
Q ss_pred HhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhcc-CCCcEEEEecCccchhhhHHHHHH
Q 008389 179 LQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGM-NEGAVYLWTLPMFHCNGWCYTWSL 257 (567)
Q Consensus 179 l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~-~~~d~~~~~~p~~~~~g~~~~~~~ 257 (567)
+....... .......+++++++|||||||.||+|.++|+++...+......+++ ..++++++..|++|.+|+...+..
T Consensus 159 ~~~~~~~~-~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~ 237 (542)
T PRK07786 159 LAEAGPAH-APVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSDVGFVGVPLFHIAGIGSMLPG 237 (542)
T ss_pred hhccCCCC-CCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhcCCCCCCceEEEecchHHHHHHHHHHHH
Confidence 55433222 1223455789999999999999999999999999888777777776 678899999999999999888888
Q ss_pred hhhcCeeEEec--cCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHHHhc--
Q 008389 258 AALCGTSICLR--QVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQK-- 333 (567)
Q Consensus 258 ~~~g~~~~~~~--~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~-- 333 (567)
+..|+++++.. .+++..+++.++++++|.++++|+++..++........ ..++|.+++||+++++++.+.+.+.
T Consensus 238 l~~G~~~v~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~--~~~lr~i~~gg~~~~~~~~~~~~~~~~ 315 (542)
T PRK07786 238 LLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARPR--DLALRVLSWGAAPASDTLLRQMAATFP 315 (542)
T ss_pred HHccCEEEEccCCCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCcc--CcceEEEEECCCCCCHHHHHHHHHHcC
Confidence 88899888764 57899999999999999999999999999886543332 2368999999999999999998854
Q ss_pred CCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEeccccc
Q 008389 334 GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVM 413 (567)
Q Consensus 334 ~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~ 413 (567)
++++++.||+||++++.+.+... ........+|.|++++ .++|+|++ +++++.+ +.|||+++|+.++
T Consensus 316 ~~~l~~~YG~tE~~~~~~~~~~~---------~~~~~~~~~G~~~~~~-~~~i~d~~-~~~~~~g--~~Gel~v~g~~~~ 382 (542)
T PRK07786 316 EAQILAAFGQTEMSPVTCMLLGE---------DAIRKLGSVGKVIPTV-AARVVDEN-MNDVPVG--EVGEIVYRAPTLM 382 (542)
T ss_pred CCeEEeeecccccccceEecCcc---------cccccCCCccccCCCc-eEEEECCC-CCCCcCC--CceEEEEEChhhh
Confidence 78999999999998665543211 1112346789999999 89999976 8888887 7899999999999
Q ss_pred ccccCCCccchhcccCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeecCCCCC
Q 008389 414 KGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGE 493 (567)
Q Consensus 414 ~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~ 493 (567)
.||+++++.+...|.+|||+|||+++++++|.+++.||.+|+|+++|.++++.+||+++.+++.|.+++|++.++...++
T Consensus 383 ~gy~~~~~~~~~~f~~~~~~TGDl~~~~~~g~~~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~ 462 (542)
T PRK07786 383 SGYWNNPEATAEAFAGGWFHSGDLVRQDEEGYVWVVDRKKDMIISGGENIYCAEVENVLASHPDIVEVAVIGRADEKWGE 462 (542)
T ss_pred hhhcCCHHHHHHHhhCCcccccceEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCcccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998887788
Q ss_pred cceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHHHHcCCcccc
Q 008389 494 SPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKEMGPVRKS 565 (567)
Q Consensus 494 ~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~~~~~~ 565 (567)
.+++++++.++...... +++.++++++++.++.|..+.+++ ||+|++||++|++|++.+.+....+.+
T Consensus 463 ~~~~~v~~~~~~~~~~~----~~l~~~l~~~l~~~~~P~~i~~v~~iP~t~~GKv~r~~L~~~~~~~~~~~~~ 531 (542)
T PRK07786 463 VPVAVAAVRNDDAALTL----EDLAEFLTDRLARYKHPKALEIVDALPRNPAGKVLKTELRERYGACVNVERR 531 (542)
T ss_pred eEEEEEEECCCCCCCCH----HHHHHHHHhhccCCCCCCEEEEeccCCCCCcccccHHHHHHHHHhhhchhhc
Confidence 88998887765423333 688999999999999999999888 999999999999999999988776644
|
|
| >PRK07638 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-67 Score=548.04 Aligned_cols=480 Identities=19% Similarity=0.283 Sum_probs=409.1
Q ss_pred cCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCeeee
Q 008389 20 LTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNA 99 (567)
Q Consensus 20 ~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~ 99 (567)
|++.+.|+++++++|+++|+.+.+.++||.||+++++++|+.|.+.|. +|++|+++++|++++++++|||+++|++++|
T Consensus 1 ~~~~~~~~~~a~~~p~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~-~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~ 79 (487)
T PRK07638 1 MGITKEYKKHASLQPNKIAIKENDRVLTYKDWFESVCKVANWLNEKES-KNKTIAILLENRIEFLQLFAGAAMAGWTCVP 79 (487)
T ss_pred CChHHHHHHHHHhCCCCeEEecCCcEeeHHHHHHHHHHHHHHHHHhCC-CCCEEEEEcCCCHHHHHHHHHHHHcCeEEEe
Confidence 678999999999999999999999999999999999999999999874 8999999999999999999999999999999
Q ss_pred ccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHHHHHH
Q 008389 100 VNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFL 179 (567)
Q Consensus 100 i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l 179 (567)
+++.++.+++.++++.++++.++++......+.. ....++.++. +.+.+
T Consensus 80 l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~-------------~~~~~~~~~~------------------~~~~~ 128 (487)
T PRK07638 80 LDIKWKQDELKERLAISNADMIVTERYKLNDLPD-------------EEGRVIEIDE------------------WKRMI 128 (487)
T ss_pred cCccCCHHHHHHHHHhCCCCEEEEecccccchhh-------------ccceEEEehh------------------hhhhh
Confidence 9999999999999999999999998865443321 1122222221 11111
Q ss_pred hcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhhHHHHHHhh
Q 008389 180 QTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAA 259 (567)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~ 259 (567)
....+... ......+++++++|||||||.||+|.++|+++..+.......++++++|+++...|++|..++...+..+.
T Consensus 129 ~~~~~~~~-~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~l~~~~~~l~ 207 (487)
T PRK07638 129 EKYLPTYA-PIENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDFHMKREDSVLIAGTLVHSLFLYGAISTLY 207 (487)
T ss_pred hhcccccc-ccccCCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCcCCCCEEEEeecchHHHHHHHHHHHHc
Confidence 11111111 11233467899999999999999999999999998888888889999999999999999888877777888
Q ss_pred hcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHHHhc--CCee
Q 008389 260 LCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQK--GFHV 337 (567)
Q Consensus 260 ~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~--~~~i 337 (567)
.|+++++...+++..+++.++++++|++.++|+++..+.+.... ..+.+.++++|+.++.+..+++.+. ++++
T Consensus 208 ~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-----~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~ 282 (487)
T PRK07638 208 VGQTVHLMRKFIPNQVLDKLETENISVMYTVPTMLESLYKENRV-----IENKMKIISSGAKWEAEAKEKIKNIFPYAKL 282 (487)
T ss_pred cCcEEEEcCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcCc-----CCceeEEEEcCCCCCHHHHHHHHHHcCCCeE
Confidence 89999888889999999999999999999999999999887321 3445567889999999999998865 7899
Q ss_pred eeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEeccccccccc
Q 008389 338 THTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYL 417 (567)
Q Consensus 338 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~~gy~ 417 (567)
++.||+||++.++..+... ......++|.|++++ .++|+|++ |.+++.| +.|||+++|+.++.||+
T Consensus 283 ~~~YG~tE~~~~~~~~~~~----------~~~~~~~~G~~~~~~-~~~i~d~~-g~~~~~g--~~Gel~v~~~~~~~gy~ 348 (487)
T PRK07638 283 YEFYGASELSFVTALVDEE----------SERRPNSVGRPFHNV-QVRICNEA-GEEVQKG--EIGTVYVKSPQFFMGYI 348 (487)
T ss_pred EEEecCCccCceEEecccc----------cCCCCCCCCcccCCc-EEEEECCC-CCCCCCC--CCeEEEEecccceeeec
Confidence 9999999998665443211 112346889999999 89999986 8899888 78999999999999999
Q ss_pred CCCccchhcccCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeecCCCCCcceE
Q 008389 418 KNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCA 497 (567)
Q Consensus 418 ~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~ 497 (567)
+++..+...+.+|||+|||+|+++++|++++.||.+|+|+.+|.+|+|.+||+++.++|+|.+++|++.+++..|+.+++
T Consensus 349 ~~~~~~~~~~~~g~~~TGDl~~~d~~g~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~ 428 (487)
T PRK07638 349 IGGVLARELNADGWMTVRDVGYEDEEGFIYIVGREKNMILFGGINIFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVA 428 (487)
T ss_pred CCHHHHhhhccCCcEecCccEeEcCCCeEEEEecCCCeEEeCCEEECHHHHHHHHHhCCCeeeEEEEecCchhcCCeeEE
Confidence 99988777778999999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred EEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHHHHcC
Q 008389 498 FVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKEMG 560 (567)
Q Consensus 498 ~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~ 560 (567)
+++. ..+. ++++++++++++.+++|..+++++ +|+|++||++|++|++++.+.+
T Consensus 429 ~v~~-----~~~~----~~l~~~~~~~l~~~~~p~~i~~v~~iP~t~~GKv~r~~L~~~~~~~~ 483 (487)
T PRK07638 429 IIKG-----SATK----QQLKSFCLQRLSSFKIPKEWHFVDEIPYTNSGKIARMEAKSWIENQE 483 (487)
T ss_pred EEEC-----CCCH----HHHHHHHHHHhhcccCCcEEEEecccCCCCcccccHHHHHHHHhccc
Confidence 8863 1223 688899999999999999999887 9999999999999999987653
|
|
| >PTZ00342 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-67 Score=561.27 Aligned_cols=514 Identities=17% Similarity=0.190 Sum_probs=398.7
Q ss_pred ccCHHHHHhhhhhcCCCceeEEEC--C---ccccHHHHHHHHHHHHHHHHHc---cCCCC-----------CEEEEEcCC
Q 008389 19 ALTPLWFLDRAATVHPTRTSVVHG--S---TRYTWLQTYQRCRRLASALCKR---SIGLG-----------CTVAIIAPN 79 (567)
Q Consensus 19 ~~t~~~~l~~~a~~~p~~~a~~~~--~---~~~Ty~el~~~~~~lA~~L~~~---g~~~g-----------d~V~l~~~~ 79 (567)
..|+.++|.+.++++|+++|+.+. + +++||+||.+++.++|.+|.+. |+++| |+|+|+++|
T Consensus 60 ~~~l~~~l~~~~~~~p~~~Al~~~~~g~~~~~~Ty~el~~~v~~~A~~L~~~~~~Gv~~g~~~~~~~~g~~d~V~i~~~N 139 (746)
T PTZ00342 60 YKHIMKLLLEKYKLNNNKIAIVEHSCGEPQNYITYGNFFKKVLSFSHSLNTYEGKGIPEKKYNEEQNNGKFKLLGLYGSN 139 (746)
T ss_pred cchHHHHHHHHHhhcCCceeEeccCCCCCceeeeHHHHHHHHHHHHHHHHHHhhcCCCcCccccccccccccEEEEEcCC
Confidence 579999999999999999999973 2 6899999999999999999974 99998 999999999
Q ss_pred hHHHHHHHHhhhhcCCeeeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCC
Q 008389 80 IPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESC 159 (567)
Q Consensus 80 ~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 159 (567)
+++|++++|||+++|+++||+++.++.+++.++|+.++++++|++.+..+.+.+....++ ..+.++.++....
T Consensus 140 ~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~~~~~l~~~~~~~~-------~l~~ii~~~~~~~ 212 (746)
T PTZ00342 140 SINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLVEGLLERKNELP-------HLKKLIILDTLIK 212 (746)
T ss_pred CHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHHHHHHHHHhhccCC-------CceEEEEECCCCc
Confidence 999999999999999999999999999999999999999999998777666555433333 4566777754211
Q ss_pred C------------------cccc-----------------------h----------------hccCCChHHHHHHHhcC
Q 008389 160 D------------------PKDL-----------------------K----------------YALGRGAVEYEKFLQTG 182 (567)
Q Consensus 160 ~------------------~~~~-----------------------~----------------~~~~~~~~~~~~~l~~~ 182 (567)
. .... . ...+.....|+++....
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 292 (746)
T PTZ00342 213 SKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKEKAKKLGISIILFDDMTKNK 292 (746)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhHHHHHHhhcCCCEEEEHHHHHhhc
Confidence 0 0000 0 00000011123332221
Q ss_pred CCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHh--ccCCCcEEEEecCccchhhhHHHHHHhhh
Q 008389 183 DPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIW--GMNEGAVYLWTLPMFHCNGWCYTWSLAAL 260 (567)
Q Consensus 183 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~--~~~~~d~~~~~~p~~~~~g~~~~~~~~~~ 260 (567)
... ....+.+++++++|+|||||||.||||++||+|+++.+....... .....+++++.+|++|++++...+.++..
T Consensus 293 ~~~-~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~~~~~~~~d~~ls~LPL~Hi~~~~~~~~~l~~ 371 (746)
T PTZ00342 293 TTN-YKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKKYNPKTHLSYLPISHIYERVIAYLSFML 371 (746)
T ss_pred ccC-CCCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcccccCCCCCeEEEeCcHHHHHHHHHHHHHHHc
Confidence 111 112234678999999999999999999999999998876654322 23356899999999999999877777777
Q ss_pred cCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcC--------CCCCC---------------------------
Q 008389 261 CGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNA--------PSEDT--------------------------- 305 (567)
Q Consensus 261 g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~--------~~~~~--------------------------- 305 (567)
|+++++... ++..+++.|++++||+++++|.+|+++.+. ....+
T Consensus 372 G~~i~~~~~-~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 450 (746)
T PTZ00342 372 GGTINIWSK-DINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKSNNNGGFSKFLEGITH 450 (746)
T ss_pred CCEEEEeCC-CHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhcCCcchHHHHHHH
Confidence 888777654 899999999999999999999999998752 10000
Q ss_pred ------cCCCCchhhhhccCCCCCHHHHHHHHh-cCCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCcee
Q 008389 306 ------ILPLPHVVHVNTAGAAPPPSVLHAMSQ-KGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRF 378 (567)
Q Consensus 306 ------~~~l~~lr~i~~~G~~l~~~~~~~~~~-~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 378 (567)
....+++|.+++||+++++++.++++. +|+++++.||+||+++.++..... ....+++|.|+
T Consensus 451 v~~kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~g~~i~~gYGlTEt~~~~~~~~~~-----------~~~~gsvG~p~ 519 (746)
T PTZ00342 451 ISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLTETTGPIFVQHAD-----------DNNTESIGGPI 519 (746)
T ss_pred HHHHHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhcCCCEEEeeccCcccceeeeccCC-----------CCCcccccCcC
Confidence 000257899999999999999999984 699999999999997765543211 12347899998
Q ss_pred -ccccceeEeeCCCCCccCCCCCceEEEEEecccccccccCCCccchhccc-CCccccCceEEEeCCCcEEEecccccee
Q 008389 379 -IGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFA-NGWYHTGDLGVKHPDNYIEIKDRSKDII 456 (567)
Q Consensus 379 -~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~-~g~~~TGDl~~~~~~g~l~~~GR~~d~i 456 (567)
|++ +++|+|.+++.....+ +.|||+++||+++.|||++++.+.+.|. +|||+|||+|++++||+++++||.+|+|
T Consensus 520 ~pg~-e~ki~d~~~~~~~~~~--~~GEl~vrGp~v~~GY~~~pe~T~~~f~~dGW~~TGDig~~d~dG~l~i~gR~kdlI 596 (746)
T PTZ00342 520 SPNT-KYKVRTWETYKATDTL--PKGELLIKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQINKNGSLTFLDRSKGLV 596 (746)
T ss_pred CCcE-EEEEecccccccCCCC--CceEEEEecCcccccccCChhhhhhhcCcCCcccCCcEEEECCCCeEEEEccCCCeE
Confidence 999 8999985544443333 4699999999999999999999999995 9999999999999999999999999999
Q ss_pred e-eCceecchHHHHHHHhcCCCceeeEEEEeecCCCCCcceEEEEEcCCc----------------cchhhH--------
Q 008389 457 I-SGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEV----------------DKSNEQ-------- 511 (567)
Q Consensus 457 ~-~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~----------------~~~~~~-------- 511 (567)
| .+|++|+|.+||+++.++|.|.+|+|++.... ..++|+|++..+. ...+..
T Consensus 597 kls~Ge~I~p~eIE~~l~~~p~V~~~~VvG~~~~---~~~~Alvv~d~~~~~~~a~~~~~~~~~~i~~~~~~~~~~~~~~ 673 (746)
T PTZ00342 597 KLSQGEYIETDMLNNLYSQISFINFCVVYGDDSM---DGPLAIISVDKYLLFKCLKDDNMLESTGINEKNYLEKLTDETI 673 (746)
T ss_pred EeCCCEEEchHHHHHHHhcCCCccEEEEEccCCc---cccEEEEECCHHHHHHHHHhcCCccccccCcccHHHHhhhhhh
Confidence 9 68999999999999999999999999997432 3489999876521 000100
Q ss_pred ---HHHHHHHHHH----H-hcCCCCCCCceeecCc--cc----CCCCccccHHHHHHHHHH
Q 008389 512 ---QLAEDIMKFC----R-AKMPAYWVPKSIVFGP--LP----KTATGKIQKHVLRAKAKE 558 (567)
Q Consensus 512 ---~~~~~l~~~l----~-~~l~~~~~p~~i~~~~--lP----~t~~GKi~r~~l~~~~~~ 558 (567)
.+.+.+.+.+ + +.|+.+.+++.|.+.+ +. .|++.|+.|+.+.+.|++
T Consensus 674 ~~~~~~~~v~~~~~~~~~~~~l~~~e~i~~~~l~~~~~t~~~~lTpt~KlkR~~v~~~y~~ 734 (746)
T PTZ00342 674 NNNIYVDYVKGKMLEVYKKTNLNRYNIINDIYLTSKVWDTNNYLTPTFKVKRFYVFKDYAF 734 (746)
T ss_pred ccHHHHHHHHHHHHHHHHHhCCccceeeeeEEEecCCCCCCCccChhhhhhHHHHHHHHHH
Confidence 1122223222 2 3599999999988754 33 899999999999998874
|
|
| >PRK08316 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-66 Score=547.96 Aligned_cols=507 Identities=29% Similarity=0.438 Sum_probs=431.2
Q ss_pred ccCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCeee
Q 008389 19 ALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLN 98 (567)
Q Consensus 19 ~~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v 98 (567)
..|+.++|++.++++|+++|+++.++.+||+||.+++.++|..|.+.|+++||+|+++++|+++++++++||+++|++++
T Consensus 10 ~~~l~~~l~~~a~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l~~~~~~~~~~~~~a~~~~G~~~v 89 (523)
T PRK08316 10 RQTIGDILRRSARRYPDKTALVFGDRSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACARAGAVHV 89 (523)
T ss_pred CCCHHHHHHHHHHHCCCCeEEEECCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHHHHH
Q 008389 99 AVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKF 178 (567)
Q Consensus 99 ~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (567)
|+++..+.+++.++++.+++++++++.+....+.+...... ...+........ .........+.++
T Consensus 90 ~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~------~~~~~~~~~~~~~ 155 (523)
T PRK08316 90 PVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLP--------VDTLILSLVLGG------REAPGGWLDFADW 155 (523)
T ss_pred ecccccCHHHHHHHHHhCCCCEEEEccchHHHHHHHhhhcC--------ccceeeeecccc------cccccchhhHHHH
Confidence 99999999999999999999999999887766554332211 111111111000 0112233455555
Q ss_pred HhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhhHHHHH-H
Q 008389 179 LQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWS-L 257 (567)
Q Consensus 179 l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~-~ 257 (567)
....... ........+++++++|||||||.||+|.++|+++..........+++++++++++.+|++|..|+...+. .
T Consensus 156 ~~~~~~~-~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~ 234 (523)
T PRK08316 156 AEAGSVA-EPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAGDMSADDIPLHALPLYHCAQLDVFLGPY 234 (523)
T ss_pred HhcCCCc-cCccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCCceEEEccCCchhhhHHHHHHHH
Confidence 5443222 1233456789999999999999999999999999988888778889999999999999999999865544 4
Q ss_pred hhhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHHHhc--CC
Q 008389 258 AALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQK--GF 335 (567)
Q Consensus 258 ~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~--~~ 335 (567)
...|+++++....++..+++.++++++|++.++|+++..+.+........ ++++|.+++||+.++.++.+.+.+. ++
T Consensus 235 ~~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~l~~~~~gg~~~~~~~~~~~~~~~~~~ 313 (523)
T PRK08316 235 LYVGATNVILDAPDPELILRTIEAERITSFFAPPTVWISLLRHPDFDTRD-LSSLRKGYYGASIMPVEVLKELRERLPGL 313 (523)
T ss_pred HhcCceEEEecCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCcccccCC-cccceEEEEcCCcCCHHHHHHHHHHcCCC
Confidence 56688877777889999999999999999999999999999876555444 7899999999999999999999864 78
Q ss_pred eeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEeccccccc
Q 008389 336 HVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKG 415 (567)
Q Consensus 336 ~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~~g 415 (567)
++++.||+||++.++..+.... .....+++|.|++++ ++.|.|++ +.+++.+ +.|||+++|++++.|
T Consensus 314 ~~~~~YG~tE~~~~~~~~~~~~---------~~~~~~~~G~~~~~~-~~~i~~~~-~~~~~~g--~~Gei~v~~~~~~~~ 380 (523)
T PRK08316 314 RFYNCYGQTEIAPLATVLGPEE---------HLRRPGSAGRPVLNV-ETRVVDDD-GNDVAPG--EVGEIVHRSPQLMLG 380 (523)
T ss_pred ceeeeecccccCccccccCccc---------cccccCCcccCCCCc-EEEEEcCC-CCCCCCC--CcceEEEECCchhhh
Confidence 9999999999987665532211 112346889999999 89999976 8888887 789999999999999
Q ss_pred ccCCCccchhcccCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeecCCCCCcc
Q 008389 416 YLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESP 495 (567)
Q Consensus 416 y~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~ 495 (567)
|+++++.+...|.+|||+|||+|++++||.+++.||.+|+|+++|.+++|.+||+.+.++++|.+++|++.+++..++.+
T Consensus 381 y~~~~~~~~~~~~~~~~~TGDl~~~~~~g~l~i~gR~~~~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~ 460 (523)
T PRK08316 381 YWDDPEKTAEAFRGGWFHSGDLGVMDEEGYITVVDRKKDMIKTGGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAV 460 (523)
T ss_pred hcCCHHHHHHHhhCCCeeccceEEEcCCceEEEecccccEEEeCCeEECHHHHHHHHHhCCChheEeEecccCcccCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888999
Q ss_pred eEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHHHHc
Q 008389 496 CAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKEM 559 (567)
Q Consensus 496 ~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~ 559 (567)
+++++..++. ..+. +.+.++++++++.+++|..+.+++ +|+|++||++|++|++.|.+.
T Consensus 461 ~~~v~~~~~~-~~~~----~~l~~~~~~~l~~~~~p~~i~~v~~~p~t~~gKi~r~~l~~~~~~~ 520 (523)
T PRK08316 461 TAVVVPKAGA-TVTE----DELIAHCRARLAGFKVPKRVIFVDELPRNPSGKILKRELRERYAGA 520 (523)
T ss_pred EEEEEECCCC-CCCH----HHHHHHHHHhcccCCCCcEEEEecCCCCCCccceeHHHHHHHHHhh
Confidence 9999988765 3344 678889999999999999999877 999999999999999999764
|
|
| >PRK06018 putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-66 Score=547.18 Aligned_cols=521 Identities=31% Similarity=0.510 Sum_probs=425.9
Q ss_pred hcccCHHHHHhhhhhcCCCceeEEEC--C--ccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhh
Q 008389 17 YMALTPLWFLDRAATVHPTRTSVVHG--S--TRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPM 92 (567)
Q Consensus 17 ~~~~t~~~~l~~~a~~~p~~~a~~~~--~--~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~ 92 (567)
.+++|+.++|+++++++|++++++.. + +++||+||.++++++|+.|.+.|+++||+|+++++|+++++++++||++
T Consensus 7 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~~~~~~~~~~~~la~~~ 86 (542)
T PRK06018 7 DWPLLCHRIIDHAARIHGNREVVTRSVEGPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGIMG 86 (542)
T ss_pred cCCCCHHHHHHHHHHhCCCceEEEeeccCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHHHh
Confidence 45789999999999999999999852 3 7899999999999999999999999999999999999999999999999
Q ss_pred cCCeeeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCCh
Q 008389 93 AGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGA 172 (567)
Q Consensus 93 ~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 172 (567)
+|++++|+++.++.+++.++++.+++++++++.++.+.+.+...... ....++.+........ ......
T Consensus 87 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~----~~~~~~ 155 (542)
T PRK06018 87 IGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIADKLP-------SVERYVVLTDAAHMPQ----TTLKNA 155 (542)
T ss_pred cCeEeeccccccCHHHHHHHHhccCCCEEEEccccHHHHHHHHhhCC-------CccEEEEecccccccc----cCcccc
Confidence 99999999999999999999999999999999988776665443332 3344444433211000 011123
Q ss_pred HHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHH--HHHHHHHHhccCCCcEEEEecCccchhh
Q 008389 173 VEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYL--MSLSVALIWGMNEGAVYLWTLPMFHCNG 250 (567)
Q Consensus 173 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~--~~~~~~~~~~~~~~d~~~~~~p~~~~~g 250 (567)
..+.+++........+ .....+++++++|||||||.||+|.+||++.+. ........++++.+|+++...|++|.++
T Consensus 156 ~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~h~~~ 234 (542)
T PRK06018 156 VAYEEWIAEADGDFAW-KTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTMLPVVPLFHANS 234 (542)
T ss_pred ccHHHHhccCCcccCc-ccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhcCCCCCCEEEEecCHHHHhh
Confidence 3566666554332211 234567899999999999999999999997432 2223344567889999999999999999
Q ss_pred hHHHHHHhhhcCeeEEec-cCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHH
Q 008389 251 WCYTWSLAALCGTSICLR-QVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHA 329 (567)
Q Consensus 251 ~~~~~~~~~~g~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~ 329 (567)
+...+.++..|+++++.. .+++..+++.++++++|++.++|+++..+.+........ ++++|.++++|+++++++.++
T Consensus 235 ~~~~~~~~~~g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~-~~~lr~~~~~G~~l~~~~~~~ 313 (542)
T PRK06018 235 WGIAFSAPSMGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEGLK-LPHLKMVVCGGSAMPRSMIKA 313 (542)
T ss_pred hHHHHhhhhcCceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhcccccCCC-cccceEEEEcCCCCCHHHHHH
Confidence 887777778888776653 568899999999999999999999999998766544444 789999999999999999999
Q ss_pred HHhcCCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEec
Q 008389 330 MSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSG 409 (567)
Q Consensus 330 ~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~ 409 (567)
++++++++++.||+||++.+++.+.....................|.|.+++ +++|+|++ +++++.++...|||+++|
T Consensus 314 ~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~-~i~v~d~~-~~~~~~~~~~~Gel~i~g 391 (542)
T PRK06018 314 FEDMGVEVRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGV-EMKITDDA-GKELPWDGKTFGRLKVRG 391 (542)
T ss_pred HHHhCCCeEeeecccccCcccccccCccccccCCchhhhhccccCCCCCCCc-EEEEECCC-CCCCCCCCCceeEEEEec
Confidence 9888899999999999987766554332222222222222345789999999 89999976 888887654689999999
Q ss_pred ccccccccCCCccchhcccCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeecC
Q 008389 410 NVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADE 489 (567)
Q Consensus 410 ~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~ 489 (567)
+.++.||++.... ....+|||+|||+++++++|++++.||.+|+|+.+|.++++.+||.++.++|+|.+++|++.++.
T Consensus 392 ~~~~~gy~~~~~~--~~~~~~~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~ 469 (542)
T PRK06018 392 PAVAAAYYRVDGE--ILDDDGFFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENLAVGHPKVAEAAVIGVYHP 469 (542)
T ss_pred CCcchhhhcCccc--EecCCcEEEcCCEEEEcCCccEEEEecCCCeEEECCEEECHHHHHHHHHhCCcceeEEEEeccCC
Confidence 9999999984221 11247899999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHHHHc
Q 008389 490 RWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKEM 559 (567)
Q Consensus 490 ~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~ 559 (567)
.+++.+.+++++.++. ..+. ++++++++++++.+..|..+.+++ ||+|++||++|++|++++.+-
T Consensus 470 ~~~~~~~~~v~~~~~~-~~~~----~~l~~~~~~~l~~~~~P~~i~~v~~iP~t~~GKi~r~~L~~~~~~~ 535 (542)
T PRK06018 470 KWDERPLLIVQLKPGE-TATR----EEILKYMDGKIAKWWMPDDVAFVDAIPHTATGKILKTALREQFKDY 535 (542)
T ss_pred CcCceeEEEEEeCCCC-CCCH----HHHHHHHHhhCccccCCcEEEEeccCCCCCcchhhHHHHHHHHhcc
Confidence 8888999999988765 4444 678899999999999999999888 999999999999999999884
|
|
| >PRK07769 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-67 Score=562.58 Aligned_cols=507 Identities=21% Similarity=0.252 Sum_probs=403.0
Q ss_pred cccCHHHHHhhhhhcCCCceeEEECC---------ccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHH
Q 008389 18 MALTPLWFLDRAATVHPTRTSVVHGS---------TRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHF 88 (567)
Q Consensus 18 ~~~t~~~~l~~~a~~~p~~~a~~~~~---------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~l 88 (567)
+..|+.++|+++++.+|+++|+++.+ +++||+||++++.++|+.|.+. +++||+|+++++|++++++++|
T Consensus 19 ~~~~l~~~l~~~a~~~~~~~a~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~-~~~gd~V~i~~~n~~e~~~~~l 97 (631)
T PRK07769 19 PNTNLVRHVERWAKVRGDKLAYRFLDFSTERDGVARDLTWSQFGARNRAVGARLQQV-TKPGDRVAILAPQNLDYLIAFF 97 (631)
T ss_pred ccCCHHHHHHHHHHhCCCCeEEEEeccCCCCCCceeEeeHHHHHHHHHHHHHHHHHh-cCCCCEEEEEcCCChHHHHHHH
Confidence 35799999999999999999998732 5799999999999999999987 8999999999999999999999
Q ss_pred hhhhcCCeeeec-cccCC--hHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccch
Q 008389 89 GVPMAGAVLNAV-NIRLN--APTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLK 165 (567)
Q Consensus 89 A~~~~G~~~v~i-~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 165 (567)
||+++|++++|+ ++..+ .+++.++++.++++++|++.+..+.+.+.....+. .....++.++.....
T Consensus 98 A~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~----- 167 (631)
T PRK07769 98 GALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAEGVRKFFRARPA-----KERPRVIAVDAVPDE----- 167 (631)
T ss_pred HHHHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHHHHHHHHHhhccc-----cccceEEEccccccc-----
Confidence 999999999999 45554 67899999999999999988765554443222110 011233333211000
Q ss_pred hccCCChHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCc
Q 008389 166 YALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPM 245 (567)
Q Consensus 166 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~ 245 (567)
... .. ...+..++++++|+|||||||.||+|.+||+++...+......+++.++|+++..+|+
T Consensus 168 -------------~~~---~~-~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl 230 (631)
T PRK07769 168 -------------VGA---TW-VPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVSWLPF 230 (631)
T ss_pred -------------ccc---cc-CCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHcCCCCcceEEEeCCC
Confidence 000 00 0113456899999999999999999999999999888877778889999999999999
Q ss_pred cchhhhHHHHHHhhhcCeeEEecc--C--CHHHHHHHHHhhCc---eEeeeCcHHHHHHHcC---CCC--CCcCCCCchh
Q 008389 246 FHCNGWCYTWSLAALCGTSICLRQ--V--TAKAVYSAIAKYGV---THFCAAPVVLNSIVNA---PSE--DTILPLPHVV 313 (567)
Q Consensus 246 ~~~~g~~~~~~~~~~g~~~~~~~~--~--~~~~~~~~i~~~~~---t~l~~~p~~~~~l~~~---~~~--~~~~~l~~lr 313 (567)
+|.+|+...+.+++.|++++++.+ + ++..+++.++++++ +.+..+|+++..+... ... .... ++++|
T Consensus 231 ~h~~gl~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~-l~~lr 309 (631)
T PRK07769 231 FHDMGLITVLLPALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARGLPKDGEPPLD-LSNVK 309 (631)
T ss_pred cCchhhHHHHHHHhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHhhccchhcccCcc-hhhee
Confidence 999999888888888999888753 3 88999999999986 7899999988777643 111 1223 88999
Q ss_pred hhhccCCCCCHHHHHHHHhc----CC---eeeeccCCccCcCCcccccCCCCCCC----------------CChhhhhhh
Q 008389 314 HVNTAGAAPPPSVLHAMSQK----GF---HVTHTYGLSETYGPSTVCAWKPEWDS----------------LPPETQARM 370 (567)
Q Consensus 314 ~i~~~G~~l~~~~~~~~~~~----~~---~i~~~YG~tE~~~~~~~~~~~~~~~~----------------~~~~~~~~~ 370 (567)
.+++||+++++++.+++.+. |+ .+++.||+||+++.++.......... .........
T Consensus 310 ~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 389 (631)
T PRK07769 310 GLLNGSEPVSPASMRKFNEAFAPYGLPPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVA 389 (631)
T ss_pred eEEeccCCCCHHHHHHHHHHHhhcCCChhhcccccchhhheeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCCCcee
Confidence 99999999999999998853 33 59999999998765554322111000 000000112
Q ss_pred hccCCceeccccceeEeeCCCCCccCCCCCceEEEEEecccccccccCCCccchhccc------------------CCcc
Q 008389 371 KARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFA------------------NGWY 432 (567)
Q Consensus 371 ~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~------------------~g~~ 432 (567)
..++|.|.++. .++|+|++++++++.| +.|||+++|+.++.|||++++.+.+.|. +|||
T Consensus 390 ~~s~G~~~~~~-~~~ivd~~~g~~~~~g--e~GEl~v~gp~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~ 466 (631)
T PRK07769 390 QVSAGKVGVSE-WAVIVDPETASELPDG--QIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWV 466 (631)
T ss_pred EEeCCCcCCCc-EEEEEcCCCCcCCCCC--CEEEEEecCCCccccccCChhHHHHHHhhhcccccccccccCcccCCCee
Confidence 35789999999 8999998889999988 8999999999999999999999888874 3899
Q ss_pred ccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhc-CCCcee--eEEEEeec-------------------CC
Q 008389 433 HTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYL-HPAVLE--ASVVARAD-------------------ER 490 (567)
Q Consensus 433 ~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~-~~~i~~--~~v~~~~~-------------------~~ 490 (567)
+|||+|+++ ||+++++||.||+||++|++|+|.|||++|.+ +|.|.+ ++|+++++ +.
T Consensus 467 ~TGDlg~~~-dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~~p~v~~~~~av~~v~d~~~~~~~~~~~~~~~~~~~~~ 545 (631)
T PRK07769 467 RTGDYGVYF-DGELYITGRVKDLVIIDGRNHYPQDLEYTAQEATKALRTGYVAAFSVPANQLPQVVFDDSHAGLKFDPED 545 (631)
T ss_pred eccccccEE-CCEEEEEcccccEEEECCeeeCHHHHHHHHHhccccccCCcEEEEEecccccccccccccccccccccCC
Confidence 999999996 99999999999999999999999999999986 899998 88889888 55
Q ss_pred CCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCC-CC-CCceeecCc---ccCCCCccccHHHHHHHHHHcCC
Q 008389 491 WGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPA-YW-VPKSIVFGP---LPKTATGKIQKHVLRAKAKEMGP 561 (567)
Q Consensus 491 ~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~-~p~~i~~~~---lP~t~~GKi~r~~l~~~~~~~~~ 561 (567)
.|+.++++|+++++....+. .+|.++++++++. +. .|..+.+++ ||+|++|||+|++|++.+.+...
T Consensus 546 ~ge~~~a~v~~~~~~~~~~~----~~l~~~~~~~l~~~~~~~p~~~~~v~~~~lP~t~~GKi~r~~l~~~~~~~~~ 617 (631)
T PRK07769 546 TSEQLVIVAERAPGAHKLDP----QPIADDIRAAIAVRHGVTVRDVLLVPAGSIPRTSSGKIARRACRAAYLDGSL 617 (631)
T ss_pred CCccEEEEEEecCccccccH----HHHHHHHHHHHHHHcCCCccEEEEECCCccccCCCcHHHHHHHHHHHHcCCC
Confidence 78899999998876423444 6788888888885 55 477777653 99999999999999999876643
|
|
| >PRK12583 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-66 Score=548.62 Aligned_cols=526 Identities=28% Similarity=0.413 Sum_probs=426.6
Q ss_pred cccccccchhhhcccCHHHHHhhhhhcCCCceeEEEC--CccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHH
Q 008389 6 GIDDLPKNAANYMALTPLWFLDRAATVHPTRTSVVHG--STRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAI 83 (567)
Q Consensus 6 ~~~~~~~~~~~~~~~t~~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~ 83 (567)
++..+.....+....|+.++|.+.++++|+++|+++. ++++||.||.+++.++|..|.+.|+++||+|+++++|++++
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~ 83 (558)
T PRK12583 4 PSYYQGGGDKPLLTQTIGDAFDATVARFPDREALVVRHQALRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEW 83 (558)
T ss_pred cccccCCCCCCcccCcHHHHHHHHHHHCCCCeEEEecCCCcEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHH
Confidence 3344444445566779999999999999999999884 47899999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcCCeeeeccccCChHHHHHHHhccCceEEEEcccch-----HHHHHHHHHHhhh------cCCCCCCCeEE
Q 008389 84 YEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYF-----KLAEEALKIMEEK------SNGRFKPPLLI 152 (567)
Q Consensus 84 ~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~------~~~~~~~~~~i 152 (567)
++++|||+++|++++++++.++.+++.++++.++++++|+++... ..+.+....+... .........++
T Consensus 84 ~~~~~a~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (558)
T PRK12583 84 LLTQFATARIGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVV 163 (558)
T ss_pred HHHHHHHHhhCCEEEecCCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccCCcceEEE
Confidence 999999999999999999999999999999999999999986532 2222221111100 00011122333
Q ss_pred EecCCCCCcccchhccCCChHHHHHHHhcCCCC-----CCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHH
Q 008389 153 VIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQ-----FDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSV 227 (567)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~ 227 (567)
...... ......|++........ .........+++++++|||||||.||+|.++|+++.+++...
T Consensus 164 ~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~ 233 (558)
T PRK12583 164 SLAPAP----------PPGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFV 233 (558)
T ss_pred EecCCC----------CccccchHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHH
Confidence 332211 01222344433322111 011122356789999999999999999999999999888888
Q ss_pred HHHhccCCCcEEEEecCccchhhhHHHHHHhhhcCeeEEe--ccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCC
Q 008389 228 ALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAALCGTSICL--RQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDT 305 (567)
Q Consensus 228 ~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~--~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~ 305 (567)
...++++++|++++..|++|.+|+...+..++.+|..+++ ..+++..+++.++++++|.+.++|+++..++.......
T Consensus 234 ~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~ 313 (558)
T PRK12583 234 AESLGLTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQRGN 313 (558)
T ss_pred HHHhCCCCCCeEEEecCchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHccccccC
Confidence 8888999999999999999999987766665555555543 35789999999999999999999999998887655444
Q ss_pred cCCCCchhhhhccCCCCCHHHHHHHHh-cC-CeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccc
Q 008389 306 ILPLPHVVHVNTAGAAPPPSVLHAMSQ-KG-FHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEK 383 (567)
Q Consensus 306 ~~~l~~lr~i~~~G~~l~~~~~~~~~~-~~-~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~ 383 (567)
.. ++++|.+++||+++++++.+++.+ ++ ..+++.||+||+++++..+..... ......++|.|++++ .
T Consensus 314 ~~-~~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~--------~~~~~~~vG~p~~~~-~ 383 (558)
T PRK12583 314 FD-LSSLRTGIMAGAPCPIEVMRRVMDEMHMAEVQIAYGMTETSPVSLQTTAADD--------LERRVETVGRTQPHL-E 383 (558)
T ss_pred CC-chhheEEEecCCCCCHHHHHHHHHHcCCcceeccccccccccceeccCcccc--------cccccCCCCccCCCC-e
Confidence 44 889999999999999999999875 44 579999999999877665432111 112346889999999 8
Q ss_pred eeEeeCCCCCccCCCCCceEEEEEecccccccccCCCccchhcc-cCCccccCceEEEeCCCcEEEeccccceeeeCcee
Q 008389 384 LDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGEN 462 (567)
Q Consensus 384 ~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~ 462 (567)
++|+|++ +.+++.+ +.|||+++|+.++.||+++++.+...| .++||+|||+|++++||.+++.||.+|+|+++|.+
T Consensus 384 ~~i~d~~-~~~~~~g--~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~dg~l~i~GR~~~~i~~~G~~ 460 (558)
T PRK12583 384 VKVVDPD-GATVPRG--EIGELCTRGYSVMKGYWNNPEATAESIDEDGWMHTGDLATMDEQGYVRIVGRSKDMIIRGGEN 460 (558)
T ss_pred EEEECCC-CCCCCCC--CeeEEEEEeCccchhhcCChHHHHhhcCCCCCeeccceEEECCCccEEEEecccceeEECCEE
Confidence 9999998 8889888 789999999999999999999888777 78999999999999999999999999999999999
Q ss_pred cchHHHHHHHhcCCCceeeEEEEeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccC
Q 008389 463 ISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPK 541 (567)
Q Consensus 463 v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~ 541 (567)
|+|.+||+.+.++++|.+++|++.++...++.++++++..++. ..+. .+++++++++|+++++|..+++++ +|+
T Consensus 461 v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~-~~~~----~~i~~~~~~~L~~~~~P~~i~~v~~lP~ 535 (558)
T PRK12583 461 IYPREIEEFLFTHPAVADVQVFGVPDEKYGEEIVAWVRLHPGH-AASE----EELREFCKARIAHFKVPRYFRFVDEFPM 535 (558)
T ss_pred eCHHHHHHHHHhCCCeeEEEEEeeecCCCCcEEEEEEEECCCC-CCCH----HHHHHHHHhhcccCcCCcEEEEeccCCC
Confidence 9999999999999999999999999988788999999987664 3334 689999999999999999999888 999
Q ss_pred CCCccccHHHHHHHHHHc
Q 008389 542 TATGKIQKHVLRAKAKEM 559 (567)
Q Consensus 542 t~~GKi~r~~l~~~~~~~ 559 (567)
|++||++|++|+++..+.
T Consensus 536 t~sGK~~r~~L~~~~~~~ 553 (558)
T PRK12583 536 TVTGKVQKFRMREISIEE 553 (558)
T ss_pred CCCCCccHHHHHHHHHhh
Confidence 999999999999997765
|
|
| >PRK06087 short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-66 Score=549.21 Aligned_cols=512 Identities=24% Similarity=0.354 Sum_probs=425.5
Q ss_pred hhhhcccCHHHHHhhhhhcCCCceeEEECC-ccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhh
Q 008389 14 AANYMALTPLWFLDRAATVHPTRTSVVHGS-TRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPM 92 (567)
Q Consensus 14 ~~~~~~~t~~~~l~~~a~~~p~~~a~~~~~-~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~ 92 (567)
...|...|+.++|++.++.+||++|+++.+ +++||+||++++.++|+.|++.|+++||+|+++++|+++++++++||++
T Consensus 17 ~~~~~~~~l~~~~~~~~~~~pd~~a~~~~~~~~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i~~~n~~~~~~~~lA~~~ 96 (547)
T PRK06087 17 QGYWGDASLADYWQQTARAMPDKIAVVDNHGASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLK 96 (547)
T ss_pred cCCCCCCCHHHHHHHHHHHCCCceEEEcCCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 345677899999999999999999999876 7999999999999999999999999999999999999999999999999
Q ss_pred cCCeeeeccccCChHHHHHHHhccCceEEEEcccc-----hHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhc
Q 008389 93 AGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEY-----FKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYA 167 (567)
Q Consensus 93 ~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 167 (567)
+|++++|+++.++.+++.++++.+++++++++... .+.+......+. ....++.++......
T Consensus 97 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~------ 163 (547)
T PRK06087 97 VGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLP-------QLQQIVGVDKLAPAT------ 163 (547)
T ss_pred cCcEEeccchhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHHHHhhCC-------CCcEEEEeCCcCCCc------
Confidence 99999999999999999999999999999997643 222222222221 334555555432111
Q ss_pred cCCChHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccc
Q 008389 168 LGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFH 247 (567)
Q Consensus 168 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~ 247 (567)
....+.+++....... .......+++++++|||||||.||+|.++|.++..........+++.+++++++..|++|
T Consensus 164 ---~~~~~~~~~~~~~~~~-~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h 239 (547)
T PRK06087 164 ---SSLSLSQIIADYEPLT-TAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGH 239 (547)
T ss_pred ---CccCHHHHhccCCccc-CCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeEEEecchHH
Confidence 1124455544332211 122346789999999999999999999999999888887777788999999999999999
Q ss_pred hhhhHHHHH-HhhhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHH
Q 008389 248 CNGWCYTWS-LAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSV 326 (567)
Q Consensus 248 ~~g~~~~~~-~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~ 326 (567)
.+|+...+. .+..|+++++...+++..+++.++++++|++.++|+++..+++........ ++++|.+++||+++++++
T Consensus 240 ~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~-~~~lr~i~~gG~~~~~~~ 318 (547)
T PRK06087 240 ATGFLHGVTAPFLIGARSVLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQPAD-LSALRFFLCGGTTIPKKV 318 (547)
T ss_pred HHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCCEEeccHHHHHHHHhccccCCCC-CCCeEEEEEcCCCCCHHH
Confidence 999865444 455677777778889999999999999999999988888887765444444 789999999999999999
Q ss_pred HHHHHhcCCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEE
Q 008389 327 LHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIV 406 (567)
Q Consensus 327 ~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~ 406 (567)
.+.+.+.++++++.||+||++++....... .......++|.|++++ .++++|++ +.+++.| +.|||+
T Consensus 319 ~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~---------~~~~~~~~~G~~~~~~-~~~i~d~~-~~~~~~g--~~Gel~ 385 (547)
T PRK06087 319 ARECQQRGIKLLSVYGSTESSPHAVVNLDD---------PLSRFMHTDGYAAAGV-EIKVVDEA-RKTLPPG--CEGEEA 385 (547)
T ss_pred HHHHHHcCCcEEEEecccccCCccccCCCc---------chhhcCCcCCccCCCc-eEEEEcCC-CCCCcCC--CcceEE
Confidence 999888899999999999997665432211 0112235689999999 89999966 8888887 789999
Q ss_pred EecccccccccCCCccchhcc-cCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEE
Q 008389 407 MSGNVVMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVA 485 (567)
Q Consensus 407 v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~ 485 (567)
++|+.++.||+++++.+...| .+|||+|||+++++++|.+++.||.+|+|+.+|.+++|.+||+.+.++++|.++++++
T Consensus 386 v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~ 465 (547)
T PRK06087 386 SRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMDEAGYIKITGRKKDIIVRGGENISSREVEDILLQHPKIHDACVVA 465 (547)
T ss_pred EecccccccccCCHHHHHHHhCCCCCcCcCceEEECCCCCEEEEecchhhhhcCCEEECHHHHHHHHHhCCCeeEEEEEe
Confidence 999999999999998888777 4799999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHH-hcCCCCCCCceeecCc-ccCCCCccccHHHHHHHHHHcC
Q 008389 486 RADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCR-AKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKEMG 560 (567)
Q Consensus 486 ~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~-~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~ 560 (567)
.+++..|++++++++..+.....+. .++.+++. +.++.+++|..+.+++ ||+|++||++|+.|++.+.+..
T Consensus 466 ~~~~~~g~~~~~~v~~~~~~~~~~~----~~~~~~~~~~~l~~~~~P~~i~~v~~iP~t~sGK~~r~~l~~~~~~~~ 538 (547)
T PRK06087 466 MPDERLGERSCAYVVLKAPHHSLTL----EEVVAFFSRKRVAKYKYPEHIVVIDKLPRTASGKIQKFLLRKDIMRRL 538 (547)
T ss_pred cCCCCcCceEEEEEEECCCCCCCCH----HHHHHHHHhccccccCCCeEEEEeccCCCCCCCcCcHHHHHHHHHHHh
Confidence 9988889999999998764323344 56777765 5799999999999988 9999999999999999887763
|
|
| >PRK05852 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-67 Score=549.61 Aligned_cols=509 Identities=21% Similarity=0.317 Sum_probs=406.8
Q ss_pred cCHHHHHhhhhhcCCCceeEEECC--ccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCee
Q 008389 20 LTPLWFLDRAATVHPTRTSVVHGS--TRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVL 97 (567)
Q Consensus 20 ~t~~~~l~~~a~~~p~~~a~~~~~--~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~ 97 (567)
-|+.++|++++.++|+++|+++.+ +++||+||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus 16 ~~l~~~l~~~a~~~p~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~ 95 (534)
T PRK05852 16 PRIADLVEVAATRLPEAPALVVTADRIAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVALLAASRADLVV 95 (534)
T ss_pred ccHHHHHHHHHHhCCCCcEEEecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCcEE
Confidence 579999999999999999999854 579999999999999999999999999999999999999999999999999999
Q ss_pred eeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHHHH
Q 008389 98 NAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEK 177 (567)
Q Consensus 98 v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (567)
+|+++.++.+++.++++.++++++|++........... .. .....+.+....... .......+..
T Consensus 96 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~--~~-------~~~~~~~~~~~~~~~------~~~~~~~~~~ 160 (534)
T PRK05852 96 VPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPT--TR-------WWPLTVNVGGDSGPS------GGTLSVHLDA 160 (534)
T ss_pred eecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhcccc--cc-------ccceeeeeccccccc------cccccccccc
Confidence 99999999999999999999999999875432111000 00 001111221110000 0000000000
Q ss_pred HHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhhHHHHHH
Q 008389 178 FLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSL 257 (567)
Q Consensus 178 ~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~ 257 (567)
... ............++.++++|||||||.||+|.++|+++...+......++++.+|++++..|++|.+|+...+..
T Consensus 161 ~~~--~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~ 238 (534)
T PRK05852 161 ATE--PTPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYRLSPRDATVAVMPLYHGHGLIAALLA 238 (534)
T ss_pred ccC--CCccccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCcceEEEecCcchhHHHHHHHHH
Confidence 000 000001111224678999999999999999999999999988888888899999999999999999999876666
Q ss_pred hhhcCeeEEec---cCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCC-CcCCCCchhhhhccCCCCCHHHHHHHHh-
Q 008389 258 AALCGTSICLR---QVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSED-TILPLPHVVHVNTAGAAPPPSVLHAMSQ- 332 (567)
Q Consensus 258 ~~~g~~~~~~~---~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~-~~~~l~~lr~i~~~G~~l~~~~~~~~~~- 332 (567)
.+.+++.++++ .+++..+++.|+++++|.++++|+++..+.+..... .....+++|.++++|+++++++.+.+.+
T Consensus 239 ~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~~~~~~~~~~~~~ 318 (534)
T PRK05852 239 TLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEPSGRKPAALRFIRSCSAPLTAETAQALQTE 318 (534)
T ss_pred HHhcCCeEEeCCCcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhcccccccccCCCeeEEEECCCCCCHHHHHHHHHH
Confidence 65555555542 468899999999999999999999999998765432 1122678999999999999999999884
Q ss_pred cCCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEecccc
Q 008389 333 KGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVV 412 (567)
Q Consensus 333 ~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~ 412 (567)
++.++++.||+||++..++......... ........+..|. .+++ .++|+|++ +++++.+ +.|||+++|+.+
T Consensus 319 ~~~~v~~~YG~tE~~~~~~~~~~~~~~~---~~~~~~~~g~~g~-~~g~-~~~i~d~~-g~~~~~g--~~Gel~v~g~~v 390 (534)
T PRK05852 319 FAAPVVCAFGMTEATHQVTTTQIEGIGQ---TENPVVSTGLVGR-STGA-QIRIVGSD-GLPLPAG--AVGEVWLRGTTV 390 (534)
T ss_pred hCCChhhccCccccchhhhcCCcccccc---ccCcccccccCCC-CCCC-eEEEECCC-CCCCCCC--CceEEEEecCcc
Confidence 5899999999999987655432210000 0000111233444 6889 89999987 8888888 789999999999
Q ss_pred cccccCCCccchhcccCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeecCCCC
Q 008389 413 MKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWG 492 (567)
Q Consensus 413 ~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g 492 (567)
+.||+++++.+...|.+|||+|||+|++++||++++.||.+|+|+.+|.+++|.+||+++.++|+|.+++|++.+++..|
T Consensus 391 ~~gY~~~~~~t~~~~~~g~~~TGD~~~~d~dG~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~V~~~~v~g~~~~~~g 470 (534)
T PRK05852 391 VRGYLGDPTITAANFTDGWLRTGDLGSLSAAGDLSIRGRIKELINRGGEKISPERVEGVLASHPNVMEAAVFGVPDQLYG 470 (534)
T ss_pred cchhcCCcccchhhhcCCCcccCceEEEeCCCcEEEEecchhhEEECCEEECHHHHHHHHHhCCCeeeEEEEecCCcCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred CcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHHHH
Q 008389 493 ESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKE 558 (567)
Q Consensus 493 ~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~ 558 (567)
+.++++++..+.. ..+. +++.++++++|+.+++|..+.+++ ||+|++||++|++|+++|..
T Consensus 471 ~~~~~~vv~~~~~-~~~~----~~i~~~~~~~l~~~~~P~~i~~v~~iP~t~~GKi~r~~L~~~~~~ 532 (534)
T PRK05852 471 EAVAAVIVPRESA-PPTA----EELVQFCRERLAAFEIPASFQEASGLPHTAKGSLDRRAVAEQFGH 532 (534)
T ss_pred ceEEEEEEECCCC-CCCH----HHHHHHHHHhcccccCCeEEEEhhhcCCCCCccccHHHHHHHhcc
Confidence 9999999876543 3444 678999999999999999999988 99999999999999998854
|
|
| >PRK05620 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-66 Score=549.85 Aligned_cols=529 Identities=27% Similarity=0.414 Sum_probs=425.0
Q ss_pred hhhcccCHHHHHhhhhhcCCCceeEEECC---ccccHHHHHHHHHHHHHHHHH-ccCCCCCEEEEEcCChHHHHHHHHhh
Q 008389 15 ANYMALTPLWFLDRAATVHPTRTSVVHGS---TRYTWLQTYQRCRRLASALCK-RSIGLGCTVAIIAPNIPAIYEAHFGV 90 (567)
Q Consensus 15 ~~~~~~t~~~~l~~~a~~~p~~~a~~~~~---~~~Ty~el~~~~~~lA~~L~~-~g~~~gd~V~l~~~~~~~~~~~~lA~ 90 (567)
..+.++|+.++|++++..+|+++|+++.+ +.+||+||.+++.++|..|.+ .|+++||+|+++++|+++++++++||
T Consensus 5 ~~~~~~~~~~~l~~~a~~~~~~~a~~~~~~~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~~~~lA~ 84 (576)
T PRK05620 5 MQDVPLSLTRILEYGSTVHGDTTVTTWGGAEQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAV 84 (576)
T ss_pred hhcCCCcHHHHHHHHHHhCCCceEEEEcCCceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence 34567899999999999999999998753 789999999999999999996 79999999999999999999999999
Q ss_pred hhcCCeeeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCC
Q 008389 91 PMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGR 170 (567)
Q Consensus 91 ~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 170 (567)
+++|++++++++.++.+++.++++.++++++|++....+.+.+....+. ....++.++...............
T Consensus 85 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~~~~~~~~~ 157 (576)
T PRK05620 85 ACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILKECP-------CVRAVVFIGPSDADSAAAHMPEGI 157 (576)
T ss_pred HhcCCEEeecccccCHHHHHHHHhccCCcEEEEChhhHHHHHHHHhhCc-------cccEEEEecCcccccchhcccccc
Confidence 9999999999999999999999999999999999887776665544333 334455444322111100111122
Q ss_pred ChHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHH--HHHhccCCCcEEEEecCccch
Q 008389 171 GAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSV--ALIWGMNEGAVYLWTLPMFHC 248 (567)
Q Consensus 171 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~--~~~~~~~~~d~~~~~~p~~~~ 248 (567)
...+|.+++........ .....++++++++|||||||.||+|.++|+++....... ...+++..++++++.+|++|.
T Consensus 158 ~~~~~~~l~~~~~~~~~-~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~ 236 (576)
T PRK05620 158 KVYSYEALLDGRSTVYD-WPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGESFLCCVPIYHV 236 (576)
T ss_pred ccccHHHHhhcCCCcCC-CCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhcCCCCCCeEEEeCChHHh
Confidence 34457777764332221 123456899999999999999999999999986554432 234678899999999999999
Q ss_pred hhhHHHHHHhhhcCeeEEec-cCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHH
Q 008389 249 NGWCYTWSLAALCGTSICLR-QVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVL 327 (567)
Q Consensus 249 ~g~~~~~~~~~~g~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~ 327 (567)
+|+...+.++..|+++++.. .+++..+++.++++++|.+.++|+++..++......... ..++|.++++|+++++.+.
T Consensus 237 ~g~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~l~~~~~gG~~~~~~~~ 315 (576)
T PRK05620 237 LSWGVPLAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNPPE-RMSLQEIYVGGSAVPPILI 315 (576)
T ss_pred hhhHHHHHHHhcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccCcc-cCceeEEEEcCCCCCHHHH
Confidence 99988888888888877664 578999999999999999999999999888654333222 4579999999999999999
Q ss_pred HHHHh-cCCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEE
Q 008389 328 HAMSQ-KGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIV 406 (567)
Q Consensus 328 ~~~~~-~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~ 406 (567)
+.+.+ +++++++.||+||++..+........ ............+|.+.+++ +++++|+ +..++...++.|||+
T Consensus 316 ~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~---~~~~~~~~~~~~~G~~~~~~-~~~i~~~--g~~~~~~~~~~Gel~ 389 (576)
T PRK05620 316 KAWEERYGVDVVHVWGMTETSPVGTVARPPSG---VSGEARWAYRVSQGRFPASL-EYRIVND--GQVMESTDRNEGEIQ 389 (576)
T ss_pred HHHHHHhCCceeeeccccccccceeeeccCCc---cccccccccccccCCcCCce-eEEEecC--CccccCCCCCceEEE
Confidence 99884 58999999999999876554322110 00000011134678899999 8999986 666654333689999
Q ss_pred EecccccccccCCCccc----h------------hcc-cCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHH
Q 008389 407 MSGNVVMKGYLKNPKAN----E------------ETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVE 469 (567)
Q Consensus 407 v~~~~~~~gy~~~~~~~----~------------~~~-~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE 469 (567)
++|+.++.||+++++.+ . ..| .+|||+|||++++++||.+++.||.+|+|+.+|.++++.+||
T Consensus 390 v~g~~~~~gY~~~~~~t~~~~~~~f~~~~~~~~~~~~~~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~i~~~eIE 469 (576)
T PRK05620 390 VRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGFLTIHDRARDVIRSGGEWIYSAQLE 469 (576)
T ss_pred EEcCcccccccCCccccccccccccccccchhhhcccccCCcEecCceEEEcCCceEEEEechhhhhhcCCEEEcHHHHH
Confidence 99999999999998876 2 223 478999999999999999999999999999999999999999
Q ss_pred HHHhcCCCceeeEEEEeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCcccc
Q 008389 470 NMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQ 548 (567)
Q Consensus 470 ~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~ 548 (567)
..+.++|.|.+++|++.++...|+.+++++++.++....+ ...++++++++++|+.++.|+.+.+++ +|+|++||++
T Consensus 470 ~~l~~~p~v~~~~vv~~~~~~~g~~~~a~v~~~~~~~~~~--~~~~~l~~~l~~~L~~~~~P~~i~~v~~~P~t~~GKv~ 547 (576)
T PRK05620 470 NYIMAAPEVVECAVIGYPDDKWGERPLAVTVLAPGIEPTR--ETAERLRDQLRDRLPNWMLPEYWTFVDEIDKTSVGKFD 547 (576)
T ss_pred HHHhcCCCceEEEEEeccCCCcCceeEEEEEecCCCCccc--ccHHHHHHHHHhhCccccCCeEEEEeccCCCCCcccCc
Confidence 9999999999999999999988899999999887642211 112789999999999999999999888 9999999999
Q ss_pred HHHHHHHHHHcC
Q 008389 549 KHVLRAKAKEMG 560 (567)
Q Consensus 549 r~~l~~~~~~~~ 560 (567)
|+.|++++.+..
T Consensus 548 r~~L~~~~~~~~ 559 (576)
T PRK05620 548 KKDLRQHLADGD 559 (576)
T ss_pred HHHHHHHHhcCC
Confidence 999999988653
|
|
| >PRK08315 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-66 Score=548.04 Aligned_cols=525 Identities=28% Similarity=0.435 Sum_probs=426.7
Q ss_pred hhhhcccCHHHHHhhhhhcCCCceeEEE--CCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhh
Q 008389 14 AANYMALTPLWFLDRAATVHPTRTSVVH--GSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVP 91 (567)
Q Consensus 14 ~~~~~~~t~~~~l~~~a~~~p~~~a~~~--~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~ 91 (567)
....++.|+.++|.+.++.+|+++|+++ .++++||+||.+++.++|..|.+.|+++||+|+++++|++++++++|||+
T Consensus 10 ~~~~~~~~l~~~l~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~ 89 (559)
T PRK08315 10 DVPLLEQTIGQLLDRTAARYPDREALVYRDQGLRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFATA 89 (559)
T ss_pred cCChhhccHHHHHHHHHHHCCCCeEEEEcCCCeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHH
Confidence 3445578999999999999999999998 45789999999999999999999999999999999999999999999999
Q ss_pred hcCCeeeeccccCChHHHHHHHhccCceEEEEcccchH-----HHHHHHHHHhhh------cCCCCCCCeEEEecCCCCC
Q 008389 92 MAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFK-----LAEEALKIMEEK------SNGRFKPPLLIVIGDESCD 160 (567)
Q Consensus 92 ~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~~~~~~~~~------~~~~~~~~~~i~~~~~~~~ 160 (567)
++|++++|+++..+.+++..+++.+++++++++..... .+.+....+... .........++.++...
T Consensus 90 ~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 167 (559)
T PRK08315 90 KIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGDEK-- 167 (559)
T ss_pred HhCeEEEecCccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhcccccccccccCCCceeEEeecccC--
Confidence 99999999999999999999999999999999875421 222221111000 00001122333332210
Q ss_pred cccchhccCCChHHHHHHHhcCCCC-----CCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCC
Q 008389 161 PKDLKYALGRGAVEYEKFLQTGDPQ-----FDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNE 235 (567)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~ 235 (567)
......+.++....... .........+++++++|||||||.||+|.++|+++..++......+++++
T Consensus 168 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~ 239 (559)
T PRK08315 168 --------HPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAMKLTE 239 (559)
T ss_pred --------CcccccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhcCCCC
Confidence 11223344443322110 01112245678999999999999999999999999988888888889999
Q ss_pred CcEEEEecCccchhhhHHHHHHh-hhcCeeEEe-ccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchh
Q 008389 236 GAVYLWTLPMFHCNGWCYTWSLA-ALCGTSICL-RQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVV 313 (567)
Q Consensus 236 ~d~~~~~~p~~~~~g~~~~~~~~-~~g~~~~~~-~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr 313 (567)
+|+++..+|++|..|+...+... ..|+++++. ..+++..+++.++++++|++.++|+.+..++......... ++++|
T Consensus 240 ~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~~~~~-~~~lr 318 (559)
T PRK08315 240 EDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHPDFARFD-LSSLR 318 (559)
T ss_pred CceEEEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecchHHHHHHHhCcccCCCC-chhhh
Confidence 99999999999999987655554 455555534 4578999999999999999999999999888765544444 88999
Q ss_pred hhhccCCCCCHHHHHHHHh-cCC-eeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCC
Q 008389 314 HVNTAGAAPPPSVLHAMSQ-KGF-HVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRT 391 (567)
Q Consensus 314 ~i~~~G~~l~~~~~~~~~~-~~~-~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~ 391 (567)
.++++|+++++++.+.+.+ ++. ++++.||+||++.+++.+..... .......+|.|++++ .++|+|+++
T Consensus 319 ~~~~~G~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~--------~~~~~~~vG~p~~~~-~v~i~d~~~ 389 (559)
T PRK08315 319 TGIMAGSPCPIEVMKRVIDKMHMSEVTIAYGMTETSPVSTQTRTDDP--------LEKRVTTVGRALPHL-EVKIVDPET 389 (559)
T ss_pred eeEecCCCCCHHHHHHHHHHcCCcceeEEEcccccccceeecCcccc--------hhhccCCCCccCCCc-EEEEEcCcc
Confidence 9999999999999998874 454 59999999999765554332111 112347889999999 899999988
Q ss_pred CCccCCCCCceEEEEEecccccccccCCCccchhcc-cCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHH
Q 008389 392 QQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVEN 470 (567)
Q Consensus 392 ~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~ 470 (567)
+++++.| +.|||+++|+.++.||+++++.+...| .++||+|||+|+++++|.++++||.+|+|+++|.++++.+||+
T Consensus 390 ~~~~~~g--~~GEl~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~d~~i~~~G~~v~~~eIE~ 467 (559)
T PRK08315 390 GETVPRG--EQGELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTGDLAVMDEEGYVNIVGRIKDMIIRGGENIYPREIEE 467 (559)
T ss_pred CCcCCCC--CceEEEEECchhhhhhcCChhHHhhcCCCCCCEEccceEEEcCCceEEEEeeccceEEECCEEEcHHHHHH
Confidence 9999988 889999999999999999998888877 6899999999999999999999999999999999999999999
Q ss_pred HHhcCCCceeeEEEEeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccH
Q 008389 471 MMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQK 549 (567)
Q Consensus 471 ~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r 549 (567)
.+.++++|.+++|++.++...++.++++|+..++. ..+. +++++++.++++.+++|..+++++ +|+|++||++|
T Consensus 468 ~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~-~~~~----~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GK~~r 542 (559)
T PRK08315 468 FLYTHPKIQDVQVVGVPDEKYGEEVCAWIILRPGA-TLTE----EDVRDFCRGKIAHYKIPRYIRFVDEFPMTVTGKIQK 542 (559)
T ss_pred HHHhCCCceEEEEEecCCCCCCeEEEEEEEeCCCC-CCCH----HHHHHHHHhhcccccCCcEEEEcccCCCCCCCceeH
Confidence 99999999999999999887788899999887654 3344 678899999999999999999888 99999999999
Q ss_pred HHHHHHHHHcCCcccc
Q 008389 550 HVLRAKAKEMGPVRKS 565 (567)
Q Consensus 550 ~~l~~~~~~~~~~~~~ 565 (567)
++|++++.+....+.+
T Consensus 543 ~~L~~~~~~~~~~~~~ 558 (559)
T PRK08315 543 FKMREMMIEELGLQAA 558 (559)
T ss_pred HHHHHHHHhhhchhhc
Confidence 9999998887655543
|
|
| >PRK06145 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-66 Score=540.16 Aligned_cols=491 Identities=29% Similarity=0.457 Sum_probs=415.0
Q ss_pred cCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCeeee
Q 008389 20 LTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNA 99 (567)
Q Consensus 20 ~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~ 99 (567)
+++.++|+++++.+|+++|+++.++++||.||.+++.++|..|.+.|+++|++|+++++|+++++++++||+++|++++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~a~~~~~~~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~ 81 (497)
T PRK06145 2 FNLSASIAFHARRTPDRAALVYRDQEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVFLP 81 (497)
T ss_pred ccHHHHHHHHHHHCCCceEEEECCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEe
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHHHHHH
Q 008389 100 VNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFL 179 (567)
Q Consensus 100 i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l 179 (567)
+++.++.+++.++++.+++++++++.+...... .....+.++.... ..+..+
T Consensus 82 l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~--------------~~~~~~~~~~~~~-------------~~~~~~- 133 (497)
T PRK06145 82 INYRLAADEVAYILGDAGAKLLLVDEEFDAIVA--------------LETPKIVIDAAAQ-------------ADSRRL- 133 (497)
T ss_pred cccccCHHHHHHHHHhcCCcEEEEccchhhhhh--------------cccceEEecCccc-------------chhHHH-
Confidence 999999999999999999999999877543211 0112222222100 001111
Q ss_pred hcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhhHHH-HHHh
Q 008389 180 QTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYT-WSLA 258 (567)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~-~~~~ 258 (567)
..............++++++++|||||||.||+|.++|+++...+......++++.+++++...|++|.+++... +..+
T Consensus 134 ~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l 213 (497)
T PRK06145 134 AQGGLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIALGLTASERLLVVGPLYHVGAFDLPGIAVL 213 (497)
T ss_pred hccCCCCCCCCCCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCcEEEEecCchhHhHHHHHHHHHH
Confidence 111111111223466899999999999999999999999998777666677889999999999999999888654 4556
Q ss_pred hhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHHHhc--CCe
Q 008389 259 ALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQK--GFH 336 (567)
Q Consensus 259 ~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~--~~~ 336 (567)
..|+++++...+++..+++.++++++|.+.++|+++..++......... ++++|.+++||++++.++.+.+.+. +.+
T Consensus 214 ~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~~~~~-~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~ 292 (497)
T PRK06145 214 WVGGTLRIHREFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRDRFD-LDSLAWCIGGGEKTPESRIRDFTRVFTRAR 292 (497)
T ss_pred hccCEEEECCcCCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCCccccc-cccceEEEecCCCCCHHHHHHHHHHcCCCc
Confidence 6788877777889999999999999999999999999999876554444 7899999999999999999998854 678
Q ss_pred eeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEecccccccc
Q 008389 337 VTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGY 416 (567)
Q Consensus 337 i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~~gy 416 (567)
+++.||+||+++.++...... .....+++|.|++++ .+++.|++ +++++.+ +.|||+++|+.++.||
T Consensus 293 v~~~YG~tE~~~~~~~~~~~~---------~~~~~~~~G~~~~~~-~~~i~~~~-~~~~~~~--~~Gel~v~g~~~~~Gy 359 (497)
T PRK06145 293 YIDAYGLTETCSGDTLMEAGR---------EIEKIGSTGRALAHV-EIRIADGA-GRWLPPN--MKGEICMRGPKVTKGY 359 (497)
T ss_pred eEEeecCcccCCcceeccCcc---------ccccCCCcccCCCCc-eEEEECCC-CCCCCCC--CceEEEEECcchhhhh
Confidence 999999999987554322111 111235789999999 89999976 8888887 7899999999999999
Q ss_pred cCCCccchhcccCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeecCCCCCcce
Q 008389 417 LKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPC 496 (567)
Q Consensus 417 ~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~ 496 (567)
+++++.+...|.++||+|||+|+++++|++++.||.+|+|+++|.+++|.+||+.+.++++|.+++|++.+++..|+.++
T Consensus 360 ~~~~~~~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~ 439 (497)
T PRK06145 360 WKDPEKTAEAFYGDWFRSGDVGYLDEEGFLYLTDRKKDMIISGGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERIT 439 (497)
T ss_pred cCChHHHHHHHhCCCeeccceEEEcCCCcEEEeccccceEEeCCeEECHHHHHHHHHhCCCeeEEEEEecCCCccCceEE
Confidence 99999999899999999999999999999999999999999999999999999999999999999999999988889999
Q ss_pred EEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHHH
Q 008389 497 AFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAK 557 (567)
Q Consensus 497 ~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~ 557 (567)
+++++.+.. ..+. +++.++++++|+.++.|..+.+++ +|+|++||++|++|++++.
T Consensus 440 ~~v~~~~~~-~~~~----~~l~~~~~~~l~~~~~p~~i~~v~~iP~t~~GKi~r~~l~~~~~ 496 (497)
T PRK06145 440 AVVVLNPGA-TLTL----EALDRHCRQRLASFKVPRQLKVRDELPRNPSGKVLKRVLRDELN 496 (497)
T ss_pred EEEEECCCC-CCCH----HHHHHHHHHhhhcCCCCCEEEEeccCCCCCcccccHHHHHHHhc
Confidence 999987654 3344 688899999999999999999887 9999999999999998753
|
|
| >PRK06188 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-66 Score=542.30 Aligned_cols=509 Identities=26% Similarity=0.352 Sum_probs=426.9
Q ss_pred hcccCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCe
Q 008389 17 YMALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAV 96 (567)
Q Consensus 17 ~~~~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~ 96 (567)
.++.|+.++|.++++++|+++|+++.++.+||.||.+++.++|..|.+.|+++|++|+++++|+++++++++||+++|++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i~~~~~~~~~~~~la~~~~G~~ 88 (524)
T PRK06188 9 HSGATYGHLLVSALKRYPDRPALVLGDTRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLR 88 (524)
T ss_pred cCCccHHHHHHHHHHHCCCCeEEEECCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCE
Confidence 34569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccCChHHHHHHHhccCceEEEEccc-chHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHH
Q 008389 97 LNAVNIRLNAPTIAFLLGHSASAVIMVDQE-YFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEY 175 (567)
Q Consensus 97 ~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 175 (567)
++|+++..+.+++.++++.++++.+++++. ......+...... ....++.+...... ...
T Consensus 89 ~v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~------------~~~ 149 (524)
T PRK06188 89 RTALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALLARVP-------SLKHVLTLGPVPDG------------VDL 149 (524)
T ss_pred EEecccCCCHHHHHHHHHhcCceEEEEecchhhHHHHHHhhhcC-------CceEEEEeCCccch------------hhH
Confidence 999999999999999999999999999876 3333332221111 23344444432110 011
Q ss_pred HHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhhHHHH
Q 008389 176 EKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTW 255 (567)
Q Consensus 176 ~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~ 255 (567)
.+......+ ........++++++++|||||||.||+|.++|.++...+......+++..++++++..|++|.+|+. .+
T Consensus 150 ~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~-~~ 227 (524)
T PRK06188 150 LAAAAKFGP-APLVAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEWEWPADPRFLMCTPLSHAGGAF-FL 227 (524)
T ss_pred HHhhhccCc-ccccccCCCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCcEEEEecCchhhhhHH-HH
Confidence 111111111 1111223445699999999999999999999999999988888888999999999999999998875 45
Q ss_pred HHhhhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHHH-hcC
Q 008389 256 SLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMS-QKG 334 (567)
Q Consensus 256 ~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~-~~~ 334 (567)
..++.|+++++....++..+++.++++++|+++++|+++..+++........ ++++|.+++||++++++....+. .++
T Consensus 228 ~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~-l~~lr~~~~gg~~~~~~~~~~~~~~~~ 306 (524)
T PRK06188 228 PTLLRGGTVIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDLRTRD-LSSLETVYYGASPMSPVRLAEAIERFG 306 (524)
T ss_pred HHHHcCCEEEEcCCCCHHHHHHHHHHhCCEEEEehHHHHHHHHhCcCccCCC-CcceeEEEEcCCCCCHHHHHHHHHHhC
Confidence 6677888888888889999999999999999999999999999876655554 88999999999999999877776 458
Q ss_pred CeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEecccccc
Q 008389 335 FHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMK 414 (567)
Q Consensus 335 ~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~~ 414 (567)
..+++.||+||++..++.+....... .......++|.|++++ .++|+|++ +++++.| +.|||+++|+.++.
T Consensus 307 ~~~~~~YG~tE~~~~~~~~~~~~~~~-----~~~~~~~~~G~p~~g~-~v~i~~~~-~~~~~~g--~~Gel~v~~~~~~~ 377 (524)
T PRK06188 307 PIFAQYYGQTEAPMVITYLRKRDHDP-----DDPKRLTSCGRPTPGL-RVALLDED-GREVAQG--EVGEICVRGPLVMD 377 (524)
T ss_pred chhhheeCccccCCceeecCchhccc-----cccccCCccccccCCc-EEEEEcCC-CCCCCCC--CeeEEEEECcchhh
Confidence 88999999999976655443211100 0122346789999999 89999987 8889888 78999999999999
Q ss_pred cccCCCccchhcccCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeecCCCCCc
Q 008389 415 GYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGES 494 (567)
Q Consensus 415 gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~ 494 (567)
||++++..+...|.+|||+|||+|+++++|.+++.||.+|+|+++|++++|.+||+++.++++|.+++|++.+++..++.
T Consensus 378 gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~ 457 (524)
T PRK06188 378 GYWNRPEETAEAFRDGWLHTGDVAREDEDGFYYIVDRKKDMIVTGGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEA 457 (524)
T ss_pred hhcCChHHhhhhhcCCceeecceEEEcCCccEEEEeccccceecCCEEECHHHHHHHHHhCCCeeEEEEEeccCCCcCce
Confidence 99999999988899999999999999999999999999999999999999999999999999999999999998888889
Q ss_pred ceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHHHHcCC
Q 008389 495 PCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKEMGP 561 (567)
Q Consensus 495 ~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~~ 561 (567)
+.+++++.++. ..+. +++++++++.++.+..|..+++++ +|+|++||++|++|++.+.+...
T Consensus 458 ~~~~v~~~~~~-~~~~----~~l~~~~~~~l~~~~~p~~i~~v~~~P~t~~gKi~r~~L~~~~~~~~~ 520 (524)
T PRK06188 458 VTAVVVLRPGA-AVDA----AELQAHVKERKGSVHAPKQVDFVDSLPLTALGKPDKKALRARYWEGRG 520 (524)
T ss_pred EEEEEEECCCC-CCCH----HHHHHHHHHhcccCCCCcEEEEecCCCCCccccccHHHHHHHHHhhcc
Confidence 99999987654 3333 678899999999999999999888 99999999999999999977654
|
|
| >PRK07867 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-66 Score=539.80 Aligned_cols=488 Identities=21% Similarity=0.262 Sum_probs=403.7
Q ss_pred ccCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHc-cCCCCCEEEEEcCChHHHHHHHHhhhhcCCee
Q 008389 19 ALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKR-SIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVL 97 (567)
Q Consensus 19 ~~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~-g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~ 97 (567)
+.++.++|++.+. ++++|+++.++++||+||++++.++|..|.+. |++++++|+++++|+++++++++||+++|+++
T Consensus 4 ~~~~~~~l~~~a~--~~~~a~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~ 81 (529)
T PRK07867 4 APTVAELLLPLAE--DDDRGLYFEDSFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLLGAAALSGIVP 81 (529)
T ss_pred cccHHHHHHHhcc--cCCceEEECCcEEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence 3478899988874 79999999999999999999999999999987 89999999999999999999999999999999
Q ss_pred eeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHHHH
Q 008389 98 NAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEK 177 (567)
Q Consensus 98 v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (567)
+|+++.++.+++.++++.++++++|++++..+.+.... ....++.+.. ..+.+
T Consensus 82 v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~-----------~~~~~~~~~~----------------~~~~~ 134 (529)
T PRK07867 82 VGLNPTRRGAALARDIAHADCQLVLTESAHAELLDGLD-----------PGVRVINVDS----------------PAWAD 134 (529)
T ss_pred EEecCCCChHHHHHHHHhCCCeEEEECHhHHHHHHhhc-----------cCceEEEecc----------------ccHHH
Confidence 99999999999999999999999999987765433221 1112222221 12344
Q ss_pred HHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhhHHHHHH
Q 008389 178 FLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSL 257 (567)
Q Consensus 178 ~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~ 257 (567)
++..............++++++++|||||||.||+|+++|+++..........++++.+|++++.+|++|.+++...+..
T Consensus 135 ~l~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~ 214 (529)
T PRK07867 135 ELAAHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRFGLGPDDVCYVSMPLFHSNAVMAGWAV 214 (529)
T ss_pred HhcccCCCCCCcccCCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhhCCCcccEEEEecchhHHHHHHHHHHH
Confidence 44322211112223467899999999999999999999999999888888888899999999999999999998765554
Q ss_pred -hhhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHHHhcCCe
Q 008389 258 -AALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQKGFH 336 (567)
Q Consensus 258 -~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~ 336 (567)
+..|+++++...+++..+++.++++++|++.++|+.+..++......... ..++| +++||+.+++...++.+.++++
T Consensus 215 ~l~~G~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~~~~~~-~~~lr-~~~gg~~~~~~~~~~~~~~g~~ 292 (529)
T PRK07867 215 ALAAGASIALRRKFSASGFLPDVRRYGATYANYVGKPLSYVLATPERPDDA-DNPLR-IVYGNEGAPGDIARFARRFGCV 292 (529)
T ss_pred HHhcCceEEecCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCccccc-ccceE-EEecCCCChHHHHHHHHHhCCc
Confidence 45566666667789999999999999999999999999988765433222 45677 4568888887765544467999
Q ss_pred eeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCc------------eEE
Q 008389 337 VTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKT------------IGE 404 (567)
Q Consensus 337 i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~------------~Ge 404 (567)
+++.||+||++..+..+. . ...+.+|.|+++ ++++|++++.+++.+ + .||
T Consensus 293 l~~~YG~TE~~~~~~~~~---~----------~~~~~~g~~~~~---~~i~~~~~~~~~~~g--~~~~~~~~~~~~~~Ge 354 (529)
T PRK07867 293 VVDGFGSTEGGVAITRTP---D----------TPPGALGPLPPG---VAIVDPDTGTECPPA--EDADGRLLNADEAIGE 354 (529)
T ss_pred EEEeecccccccccccCC---C----------CCCCCcCCCCCC---EEEEECCCCCCCCCC--ccccccccccCCcceE
Confidence 999999999875543211 0 122567888887 567887778888877 5 799
Q ss_pred EEE-ecccccccccCCCccchhcccCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEE
Q 008389 405 IVM-SGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASV 483 (567)
Q Consensus 405 i~v-~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v 483 (567)
|++ +|++++.||+++++.+...|.+|||+|||+|+++++|.+++.||.+|+|+++|++++|.+||+++.++|+|.+++|
T Consensus 355 l~i~~g~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~V 434 (529)
T PRK07867 355 LVNTAGPGGFEGYYNDPEADAERMRGGVYWSGDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERILLRYPDATEVAV 434 (529)
T ss_pred EEEecCCcccccccCChHhhhhhhcCCeEeeccEEEEeCCCcEEEeccccCeEEECCEEeCHHHHHHHHHhCCCeeEEEE
Confidence 999 9999999999999999888999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhc--CCCCCCCceeecCc-ccCCCCccccHHHHHHHHHHcC
Q 008389 484 VARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAK--MPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKEMG 560 (567)
Q Consensus 484 ~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~--l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~ 560 (567)
++.+++..|++++++++..++. ..+. ++++++++++ |+.+++|..+.+++ +|+|++||++|+.|+++..++.
T Consensus 435 ~g~~~~~~g~~~~a~vv~~~~~-~~~~----~~l~~~~~~~~~l~~~~~P~~i~~~~~iP~t~~GKv~r~~L~~~~~~~~ 509 (529)
T PRK07867 435 YAVPDPVVGDQVMAALVLAPGA-KFDP----DAFAEFLAAQPDLGPKQWPSYVRVCAELPRTATFKVLKRQLSAEGVDCA 509 (529)
T ss_pred EeccCCCCCeeEEEEEEECCCC-CCCH----HHHHHHHHhhccCCcccCCeEEEEeeccCCCCCcceeHHHHHHhcCCCC
Confidence 9999998899999999988775 4455 5677777764 99999999999888 9999999999999999876553
|
|
| >PRK06060 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-66 Score=563.83 Aligned_cols=477 Identities=19% Similarity=0.240 Sum_probs=396.1
Q ss_pred CHHHHHhhhhhc--CCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCeee
Q 008389 21 TPLWFLDRAATV--HPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLN 98 (567)
Q Consensus 21 t~~~~l~~~a~~--~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v 98 (567)
|+.++|.+.+.. +||++|+++. ..+||+||+++++++|+.|.+.|+++||+|+++++|++++++++|||+++|++++
T Consensus 5 ~~~~~~~~~a~~~~~pd~~a~~~~-~~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~aG~~~v 83 (705)
T PRK06060 5 NLAGLLAEQASEAGWYDRPAFYAA-DVVTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLLACLARGVMAF 83 (705)
T ss_pred CHHHHHHHHHhhccCCCceEEEec-CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEE
Confidence 788999988876 7999999874 5899999999999999999999999999999999999999999999999999999
Q ss_pred eccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHHHHH
Q 008389 99 AVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKF 178 (567)
Q Consensus 99 ~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (567)
|++|.++.+++.++++.++++++|++.+....+.. ..++. ...+
T Consensus 84 pi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~---------------~~~~~---------------------~~~~ 127 (705)
T PRK06060 84 LANPELHRDDHALAARNTEPALVVTSDALRDRFQP---------------SRVAE---------------------AAEL 127 (705)
T ss_pred ecCCCCCHHHHHHHHhcCCCcEEEEchHHhhhhcc---------------cccch---------------------hhhh
Confidence 99999999999999999999999998654332211 00000 0000
Q ss_pred HhcCC-CCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHH-HHhccCCCcEEEEecCccchhhhHH-HH
Q 008389 179 LQTGD-PQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVA-LIWGMNEGAVYLWTLPMFHCNGWCY-TW 255 (567)
Q Consensus 179 l~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~-~~~~~~~~d~~~~~~p~~~~~g~~~-~~ 255 (567)
+.... .......+..++++++++|||||||.||+|.++|+++........ ..+++.++|++++..|++|.+++.. .+
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 207 (705)
T PRK06060 128 MSEAARVAPGGYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRLTPEDTGLCSARMYFAYGLGNSVW 207 (705)
T ss_pred hhhccccCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhhCCCCcceeEEeccchhhcchhHHHH
Confidence 10000 000011234567899999999999999999999999988776654 4578899999999999999888753 44
Q ss_pred HHhhhcCeeEEec-cCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHHHhc-
Q 008389 256 SLAALCGTSICLR-QVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQK- 333 (567)
Q Consensus 256 ~~~~~g~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~- 333 (567)
..+..|+++++.. .+++..+...++++++|+++++|+++..+++..... . ++++|.+++||+++++++.+.+.+.
T Consensus 208 ~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~--~-~~slr~i~~gGe~l~~~~~~~~~~~~ 284 (705)
T PRK06060 208 FPLATGGSAVINSAPVTPEAAAILSARFGPSVLYGVPNFFARVIDSCSPD--S-FRSLRCVVSAGEALELGLAERLMEFF 284 (705)
T ss_pred HHHhcCCEEEEeCCCCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhcccc--c-ccceeEEEEecCcCCHHHHHHHHHHc
Confidence 5566788877765 468888999999999999999999999998754322 2 7889999999999999999998864
Q ss_pred -CCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEecccc
Q 008389 334 -GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVV 412 (567)
Q Consensus 334 -~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~ 412 (567)
++++++.||+||++..+..+... ....+++|.|++++ .++|+|++ +++++.| +.|||+++|+.+
T Consensus 285 ~~~~~~~~YG~tE~~~~~~~~~~~-----------~~~~~~iG~p~~~~-~v~i~d~~-g~~~~~g--~~GEl~i~g~~v 349 (705)
T PRK06060 285 GGIPILDGIGSTEVGQTFVSNRVD-----------EWRLGTLGRVLPPY-EIRVVAPD-GTTAGPG--VEGDLWVRGPAI 349 (705)
T ss_pred CCCceEeeeeccccCceEEeccCC-----------CCCcCcccccCCCc-EEEEECCC-CCCCCCC--CceEEEEccchh
Confidence 58999999999997554332111 11236789999999 89999987 8888888 789999999999
Q ss_pred cccccCCCccchhcccCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeecCCCC
Q 008389 413 MKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWG 492 (567)
Q Consensus 413 ~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g 492 (567)
+.||+++++.+.. .+|||+|||+|++++||++++.||.||+||++|++|++.+||.++.+++.|.+++|++.++...+
T Consensus 350 ~~GY~~~~~~~~~--~~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~~~V~~a~vv~~~~~~~~ 427 (705)
T PRK06060 350 AKGYWNRPDSPVA--NEGWLDTRDRVCIDSDGWVTYRCRADDTEVIGGVNVDPREVERLIIEDEAVAEAAVVAVRESTGA 427 (705)
T ss_pred hhhhhCCCccccc--CCCcEECCeeEEECCCceEEEecccCceEEECCEEECHHHHHHHHHhCCCeeEEEEEeecCccCC
Confidence 9999999886532 47899999999999999999999999999999999999999999999999999999999988878
Q ss_pred CcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHH
Q 008389 493 ESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKA 556 (567)
Q Consensus 493 ~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~ 556 (567)
+.++++++...+. ..+. +...+++++++++|+.|++|..|++++ ||+|++||++|++|++.+
T Consensus 428 ~~~~a~vv~~~~~-~~~~-~~~~~i~~~l~~~L~~~~~P~~i~~v~~iP~t~~GKidr~~L~~~~ 490 (705)
T PRK06060 428 STLQAFLVATSGA-TIDG-SVMRDLHRGLLNRLSAFKVPHRFAVVDRLPRTPNGKLVRGALRKQS 490 (705)
T ss_pred eeEEEEEEecccc-CcCh-HHHHHHHHHHHHhCCCCcCCcEEEEeecCCCCcchhhHHHHHHhhc
Confidence 8999999977653 2222 223678899999999999999999888 999999999999999865
|
|
| >PLN02330 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-66 Score=543.83 Aligned_cols=501 Identities=27% Similarity=0.395 Sum_probs=414.4
Q ss_pred ccCHHHHHhhhhhcCCCceeEEEC--CccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCe
Q 008389 19 ALTPLWFLDRAATVHPTRTSVVHG--STRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAV 96 (567)
Q Consensus 19 ~~t~~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~ 96 (567)
..|+.++|.+.+.++|+++|+.+. ++.+||.||.+++.++|..|.+.|+++||+|+++++|+++++++++||+++|++
T Consensus 27 ~~~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~ 106 (546)
T PLN02330 27 KLTLPDFVLQDAELYADKVAFVEAVTGKAVTYGEVVRDTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGGV 106 (546)
T ss_pred CCcHHHHHhhhhhcCCCccEEEecCCCCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHhCcE
Confidence 478999999999999999999974 579999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHHH
Q 008389 97 LNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYE 176 (567)
Q Consensus 97 ~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 176 (567)
++|+++..+.+++.++++.++++++++++.....+... ...++.++.... .....|.
T Consensus 107 ~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~-------------~~~~i~~~~~~~----------~~~~~~~ 163 (546)
T PLN02330 107 FSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKVKGL-------------GLPVIVLGEEKI----------EGAVNWK 163 (546)
T ss_pred eccCCccCCHHHHHHHHHhcCCeEEEEccchhhhHhhc-------------CCcEEEecCCCC----------CCcccHH
Confidence 99999999999999999999999999998876654321 122444433211 1223455
Q ss_pred HHHhcCCCCCC--CCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccC----CCcEEEEecCccchhh
Q 008389 177 KFLQTGDPQFD--WKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMN----EGAVYLWTLPMFHCNG 250 (567)
Q Consensus 177 ~~l~~~~~~~~--~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~----~~d~~~~~~p~~~~~g 250 (567)
+++........ .......+++++++|||||||.||+|.++|.++..+.... .+++. ..++.+..+|++|.+|
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~p~~h~~g 241 (546)
T PLN02330 164 ELLEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSS--LFSVGPEMIGQVVTLGLIPFFHIYG 241 (546)
T ss_pred HHHhhccccCcccccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHH--hhccCccccCceEEEEecChHHHHH
Confidence 55544322111 1223456789999999999999999999999988765432 23333 3467889999999999
Q ss_pred hHHHH-HHhhhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCC--chhhhhccCCCCCHHHH
Q 008389 251 WCYTW-SLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLP--HVVHVNTAGAAPPPSVL 327 (567)
Q Consensus 251 ~~~~~-~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~--~lr~i~~~G~~l~~~~~ 327 (567)
+...+ ..+..|+++++...+++..+++.++++++|.+.++|+++..+++........ +. .+|.++++|+++++++.
T Consensus 242 ~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~-~~~~~l~~i~~~g~~l~~~~~ 320 (546)
T PLN02330 242 ITGICCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPIVEEFD-LSKLKLQAIMTAAAPLAPELL 320 (546)
T ss_pred HHHHHHHHhhcCCEEEEecccCHHHHHHHHHHcCCeeeecCCHHHHHHHhCccccccc-cchheeeeEEEcCCcCCHHHH
Confidence 86544 4556688877778899999999999999999999999999998865443333 33 47889999999999999
Q ss_pred HHHHh-c-CCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEE
Q 008389 328 HAMSQ-K-GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEI 405 (567)
Q Consensus 328 ~~~~~-~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei 405 (567)
+++.+ + ++++++.||+||++.+...+..... ........++|.|++++ +++|+|++++++++.| +.|||
T Consensus 321 ~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~------~~~~~~~~~vG~~~~~~-~v~i~d~~~~~~~p~g--~~Gel 391 (546)
T PLN02330 321 TAFEAKFPGVQVQEAYGLTEHSCITLTHGDPEK------GHGIAKKNSVGFILPNL-EVKFIDPDTGRSLPKN--TPGEL 391 (546)
T ss_pred HHHHHHcCCCeEEecccccccccceecCCCccc------cccccccCccccccCCc-EEEEEeCCCCccCCCC--CceEE
Confidence 99985 4 8999999999998755433211100 00112236789999999 8999998889999988 78999
Q ss_pred EEecccccccccCCCccchhcc-cCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEE
Q 008389 406 VMSGNVVMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVV 484 (567)
Q Consensus 406 ~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~ 484 (567)
+++|+.++.||+++++.+...| .+|||+|||+|++++||.+++.||.+|+|+++|.+|+|.+||.++.+++.|.+++|+
T Consensus 392 ~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~ 471 (546)
T PLN02330 392 CVRSQCVMQGYYNNKEETDRTIDEDGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVV 471 (546)
T ss_pred EEecchhhhhhccCccchhhhccCCCceecccEEEEeCCCcEEEEechHHhhhcCCEEECHHHHHHHHHhCCchheEEEE
Confidence 9999999999999998888777 479999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHHHHc
Q 008389 485 ARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKEM 559 (567)
Q Consensus 485 ~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~ 559 (567)
+.++...|+.++++|+..++. ..+. ++++++++++|+.++.|+.+.+++ +|+|++||++|++|++++...
T Consensus 472 ~~~~~~~g~~~~a~v~~~~~~-~~~~----~~l~~~~~~~l~~~~~p~~~~~v~~iP~t~~GK~~r~~L~~~~~~~ 542 (546)
T PLN02330 472 PLPDEEAGEIPAACVVINPKA-KESE----EDILNFVAANVAHYKKVRVVQFVDSIPKSLSGKIMRRLLKEKMLSI 542 (546)
T ss_pred eccccccCceeEEEEEECCCC-CCCH----HHHHHHHHHhcccccCceEEEEeccCCCCCCcceeHHHHHHHHHhh
Confidence 999988889999999987654 3333 678899999999999999888877 999999999999999999766
|
|
| >TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-66 Score=541.27 Aligned_cols=500 Identities=24% Similarity=0.355 Sum_probs=411.4
Q ss_pred hcccCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCe
Q 008389 17 YMALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAV 96 (567)
Q Consensus 17 ~~~~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~ 96 (567)
|...|+.++|+++++.+|+++|+++.++++||+||.++++++|..|.+.|+++|++|+++++|++++++++|||+++|++
T Consensus 20 ~~~~~l~~~~~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~G~~ 99 (527)
T TIGR02275 20 WQDKPLTDILRDQAARYPDAIAIICGNRQWSYRELDQRADNLAAGLTKLGIGQGDTAVVQLPNIAEFYIVFFALLKLGIA 99 (527)
T ss_pred ccCCcHHHHHHHHHHHCCCceEEEeCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHcCeE
Confidence 55678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccCChHHHHHHHhccCceEEEEcccchHHH-HHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHH
Q 008389 97 LNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLA-EEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEY 175 (567)
Q Consensus 97 ~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 175 (567)
++++++..+.+++.++++.+++++++++....... .......... ......++....... ....
T Consensus 100 ~v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~------------~~~~ 164 (527)
T TIGR02275 100 PVLALFSHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSK---LPTLRNIIVAGQTRV------------EAEL 164 (527)
T ss_pred EeccccccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHhh---CCcceEEEEecCCCC------------cchh
Confidence 99999999999999999999999999987642211 1111111100 002223333221100 0011
Q ss_pred HHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhhHH--
Q 008389 176 EKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCY-- 253 (567)
Q Consensus 176 ~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~-- 253 (567)
...+...... .......++++++++|||||||.||+|.++|.++..++......+.++.+|++++.+|++|.+++..
T Consensus 165 ~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~P~~h~~~~~~~~ 243 (527)
T TIGR02275 165 FLWLESPAEP-VKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICWLTQQTRYLCALPAAHNYPLSSPG 243 (527)
T ss_pred hHHhhCcCcc-ccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCCEEEECCChHhhhhhhHHH
Confidence 1112111111 1112346789999999999999999999999999988888777888999999999999999999864
Q ss_pred HHHHhhhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHHHh-
Q 008389 254 TWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQ- 332 (567)
Q Consensus 254 ~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~- 332 (567)
.+..+..|+++++...+++..+++.++++++|++.++|+++..+.+........ ++++|.+++||+++++++.+.+.+
T Consensus 244 ~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~-~~~lr~~~~gG~~l~~~~~~~~~~~ 322 (527)
T TIGR02275 244 ALGVFYAGGCVVLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKSRYD-LSSLKLLQVGGAKFSEAAARRVPAV 322 (527)
T ss_pred HHHHHhcCCeEEECCCCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCccccCCC-ccceEEEEEcCCCCCHHHHHHHHHH
Confidence 556667788877777789999999999999999999999999998876554444 889999999999999999999985
Q ss_pred cCCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceec-cccceeEeeCCCCCccCCCCCceEEEEEeccc
Q 008389 333 KGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFI-GLEKLDVIDTRTQQPVPADGKTIGEIVMSGNV 411 (567)
Q Consensus 333 ~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~-~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~ 411 (567)
++.++++.||+||++....... . .......++|.|++ +. .++|+|++ |++++.| +.|||+++|+.
T Consensus 323 ~g~~~~~~YG~tE~~~~~~~~~-~---------~~~~~~~~~G~~~~~~~-~v~i~d~~-g~~~~~g--~~Gei~v~g~~ 388 (527)
T TIGR02275 323 FGCQLQQVFGMAEGLVNYTRLD-D---------PAEIIFTTQGRPMSPDD-EVRVVDDH-GNPVAPG--ETGMLLTRGPY 388 (527)
T ss_pred hCCeEEeeeccCccCccccCCC-C---------ccccccccCCCCCCCCc-eEEEECCC-CCCCCCC--CceEEEecCCc
Confidence 5999999999999643222110 0 00112357899995 66 79999976 8888888 88999999999
Q ss_pred ccccccCCCccchhcc-cCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeecCC
Q 008389 412 VMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADER 490 (567)
Q Consensus 412 ~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~ 490 (567)
++.||+++++.+...| .+|||+|||+|+++++|++++.||.+|+|+.+|.+|+|.+||++|.++|+|.+++|++.++..
T Consensus 389 ~~~gY~~~~~~~~~~~~~dg~~~TGDl~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~ 468 (527)
T TIGR02275 389 TFRGYYKAPEHNAAAFDAEGFYYTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLLAHPAVHDAALVSMPDEL 468 (527)
T ss_pred cchhhcCChhHhHhhcCcCCCEEcCceEEEcCCccEEEEecccceeecCCEEECHHHHHHHHHhCCCceEEEEEecCCcc
Confidence 9999999999888777 589999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCcceEEEEEcCCccchhhHHHHHHHHHHHHhc-CCCCCCCceeecCc-ccCCCCccccHHHHH
Q 008389 491 WGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAK-MPAYWVPKSIVFGP-LPKTATGKIQKHVLR 553 (567)
Q Consensus 491 ~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~-l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~ 553 (567)
.++.+++++++.++. .+. .+++++++++ ++.++.|..+.+++ ||+|++||++|+.|+
T Consensus 469 ~~~~~~a~vv~~~~~--~~~----~~l~~~l~~~~l~~~~~P~~i~~v~~iP~t~sGKv~r~~L~ 527 (527)
T TIGR02275 469 LGEKSCAFIVVRDPA--LKA----AQLRRFLRERGLAEYKLPDRVEFIDSLPLTAVGKIDKKALR 527 (527)
T ss_pred cccEEEEEEEECCCC--CCH----HHHHHHHHhCCCccccCCCEEEEeccCCCCCccceeHHhcC
Confidence 889999999887652 334 6788999875 99999999999888 999999999999874
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB. |
| >TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-66 Score=541.15 Aligned_cols=499 Identities=25% Similarity=0.340 Sum_probs=420.9
Q ss_pred CHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCeeeec
Q 008389 21 TPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAV 100 (567)
Q Consensus 21 t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i 100 (567)
++.++|++.++.+|+++|+.+.++++||+||++++.++|+.|.+.|+.+||+|+++++|+.++++++|||+++|++++|+
T Consensus 1 ~~~~~~~~~~~~~p~~~a~~~~~~~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l 80 (515)
T TIGR03098 1 LLHHLLEDAAARLPDATALVHHDRTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPI 80 (515)
T ss_pred CHHHHHHHHHHHCCCCeEEEECCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCEEEEeC
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHHHHHHh
Q 008389 101 NIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQ 180 (567)
Q Consensus 101 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 180 (567)
++.++.+++..+++.+++++++++.+..+.+........ ....++.+++...... .......|+++..
T Consensus 81 ~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 148 (515)
T TIGR03098 81 NPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGCH-------DLRTLILVGEPAHASE-----GGGESPSWPKLLA 148 (515)
T ss_pred CCCCCHHHHHHHHHcCCCeEEEEccchhhhhHhhhhccc-------ccceEEEecCcccccC-----CccccccHHHhhc
Confidence 999999999999999999999998876655544332221 2344555554321111 1222345565554
Q ss_pred cCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhhHHHHHHhhh
Q 008389 181 TGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAAL 260 (567)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~ 260 (567)
..... ...+...+++++++|||||||.||+|.+||+++..++......+++..+|++++.+|++|.+|+...+.++..
T Consensus 149 ~~~~~--~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~ 226 (515)
T TIGR03098 149 LGDAD--PPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLENRPDDRLLAVLPLSFDYGFNQLTTAFYV 226 (515)
T ss_pred ccccc--ccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHhCCCcccEEEEECchhhHhHHHHHHHHHHc
Confidence 33221 1223456789999999999999999999999999888888788889999999999999999999888888889
Q ss_pred cCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHHHhc--CCeee
Q 008389 261 CGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQK--GFHVT 338 (567)
Q Consensus 261 g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~--~~~i~ 338 (567)
|+++++...+++..+++.++++++|++.++|+++..+.+..... .. ++++|.++++|+++++++.+.+.+. ++.++
T Consensus 227 G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-~~-~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~ 304 (515)
T TIGR03098 227 GATVVLHDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQLDWPE-SA-APSLRYLTNSGGAMPRATLSRLRSFLPNARLF 304 (515)
T ss_pred CCEEEEcCCCCHHHHHHHHHHcCCceEecChHHHHHHHhcccCC-CC-ccceEEEEecCCcCCHHHHHHHHHHCCCCeEe
Confidence 99998888889999999999999999999999999998753322 22 7889999999999999999999864 78999
Q ss_pred eccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEecccccccccC
Q 008389 339 HTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLK 418 (567)
Q Consensus 339 ~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~ 418 (567)
+.||+||++....... .......+.+|.|++++ .++|+|++ +.+++.+ +.|||+++|+.++.||++
T Consensus 305 ~~YG~tE~~~~~~~~~----------~~~~~~~~~vG~~~~~~-~~~i~~~~-~~~~~~~--~~Gel~v~g~~~~~gy~~ 370 (515)
T TIGR03098 305 LMYGLTEAFRSTYLPP----------EEVDRRPDSIGKAIPNA-EVLVLRED-GSECAPG--EEGELVHRGALVAMGYWN 370 (515)
T ss_pred eeeccccccceEeccc----------ccccCCCCCcceecCCC-EEEEECCC-CCCCCCC--CceEEEEcCchhhccccC
Confidence 9999999865433211 11122357899999999 89999965 8888877 789999999999999999
Q ss_pred CCccchhccc------------CCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEe
Q 008389 419 NPKANEETFA------------NGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVAR 486 (567)
Q Consensus 419 ~~~~~~~~~~------------~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~ 486 (567)
+++.+...|. ++||+|||+|+++++|.+++.||.+|+|+.+|.+++|.+||+++.+++.|.+++|++.
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~ 450 (515)
T TIGR03098 371 DPEKTAERFRPLPPRPGELHLPELAVWSGDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAYATGLVAEAVAFGV 450 (515)
T ss_pred CchhhhhhhhccCCccccccccccceeccceEEEcCCceEEEEeccccceecCCEEeCHHHHHHHHhcCCCeeEEEEEec
Confidence 9887766552 3489999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHH
Q 008389 487 ADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRA 554 (567)
Q Consensus 487 ~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~ 554 (567)
+++..|+.++++++...+. ..+. ++++++++++++.+++|..+++++ ||+|++||++|++|++
T Consensus 451 ~~~~~g~~~~~~~~~~~~~-~~~~----~~l~~~l~~~l~~~~~p~~i~~v~~iP~t~~GK~~r~~L~~ 514 (515)
T TIGR03098 451 PDPTLGQAIVLVVTPPGGE-ELDR----AALLAECRARLPNYMVPALIHVRQALPRNANGKIDRKALAA 514 (515)
T ss_pred cCcccCceEEEEEEeCCCC-CCCH----HHHHHHHHhhCccccCCCEEEEeccCCCCCCCCCcHHHhcc
Confidence 9988899999988865543 3444 678999999999999999999888 9999999999999974
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. |
| >TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-66 Score=542.09 Aligned_cols=501 Identities=27% Similarity=0.398 Sum_probs=409.8
Q ss_pred hcccCHHHHHhhhhhcCCCceeEEEC------CccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhh
Q 008389 17 YMALTPLWFLDRAATVHPTRTSVVHG------STRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGV 90 (567)
Q Consensus 17 ~~~~t~~~~l~~~a~~~p~~~a~~~~------~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~ 90 (567)
|.+.|+.++|++.++.+|+++|++.. ...+||+||++++.++|..|.+.|+++||+|+++++|++++++++|||
T Consensus 19 ~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~ 98 (538)
T TIGR03208 19 WRDRTINDHFDAAVANCPDKPALTAYRDGHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLAC 98 (538)
T ss_pred cccCcHHHHHHHHHHHCCCceEEEeecccCCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence 34568999999999999999999862 368999999999999999999999999999999999999999999999
Q ss_pred hhcCCeeeeccccCChHHHHHHHhccCceEEEEcccchHHH-HHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccC
Q 008389 91 PMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLA-EEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALG 169 (567)
Q Consensus 91 ~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 169 (567)
+++|++++|+++.++.+++.++++.++++++++++...... ........ ........++.++...
T Consensus 99 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~----------- 164 (538)
T TIGR03208 99 ARIGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQ---SKLPALRQVVVIDGDG----------- 164 (538)
T ss_pred HhcCEEEeccCcccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHh---ccCCcceEEEEecCCC-----------
Confidence 99999999999999999999999999999999987653110 01111111 0011223444443221
Q ss_pred CChHHHHHHHhcCCCCC-------CCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEe
Q 008389 170 RGAVEYEKFLQTGDPQF-------DWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWT 242 (567)
Q Consensus 170 ~~~~~~~~~l~~~~~~~-------~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~ 242 (567)
...++.++....... .......++++++++|||||||.||+|.++|+++...+......++++.+|++++.
T Consensus 165 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~ 242 (538)
T TIGR03208 165 --DDSFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLELGGGDVILMA 242 (538)
T ss_pred --CcCHHHHhhccccccccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhcCCCCCCeEEEe
Confidence 112333332111000 01123456899999999999999999999999999988888888889999999999
Q ss_pred cCccchhhhHH-HHHHhhhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCC
Q 008389 243 LPMFHCNGWCY-TWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAA 321 (567)
Q Consensus 243 ~p~~~~~g~~~-~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~ 321 (567)
+|++|..|+.. .+.++..|+++++...+++..+++.++++++|++.++|+++..+.......... ++++|.+++||++
T Consensus 243 ~pl~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~-~~~l~~~~~gG~~ 321 (538)
T TIGR03208 243 SPMAHQTGFMYGLMMPLILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTDLCRAVKESGAP-VPSLFTFLCAGAP 321 (538)
T ss_pred CCchhHHHHHHHHHHHHHcCCEEEecCccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhccCCC-CCcceEEEEcCCC
Confidence 99999988765 445566677777777789999999999999999999999999988765433333 7899999999999
Q ss_pred CCHHHHHHHHh-cCCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCC
Q 008389 322 PPPSVLHAMSQ-KGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGK 400 (567)
Q Consensus 322 l~~~~~~~~~~-~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~ 400 (567)
+++++.+++.+ +++++++.||+||++++...+.... .......+|.|++++ .++|+|++ +++++.|
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~---------~~~~~~~~G~~~~g~-~v~i~~~~-~~~~~~g-- 388 (538)
T TIGR03208 322 IPGILVERAWELLGALIVSAWGMTENGAVTVTEPDDA---------LEKASTTDGRPLPGV-EVKVIDAN-GAKLSQG-- 388 (538)
T ss_pred CCHHHHHHHHHHcCCeEEeeeccCcCCCccccCcccc---------hhhccCcccccCCCC-EEEEECCC-CCCCcCC--
Confidence 99999998874 5899999999999977654432110 111235689999999 89999976 8888887
Q ss_pred ceEEEEEecccccccccCCCccchhcccCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCcee
Q 008389 401 TIGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLE 480 (567)
Q Consensus 401 ~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~ 480 (567)
+.|||+++|+.++.||+++++.+.. ..+|||+|||+|+++++|.++++||.+|+|+.+|++|+|.+||+++.++++|.+
T Consensus 389 ~~Gel~v~g~~~~~gy~~~~~~~~~-~~~~~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~~~v~~ 467 (538)
T TIGR03208 389 ETGRLLVRGCSNFGGYLKRPHLNST-DAEGWFDTGDLAFQDAEGYIRINGRSKDVIIRGGENIPVVEIENLLYQHPAVAQ 467 (538)
T ss_pred CCcEEEEecCcccccccCCcccccc-cCCCceeccceEEECCCCcEEEEeccCceEEECCEEECHHHHHHHHhcCcceee
Confidence 7899999999999999999877643 368999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHh-cCCCCCCCceeecCc-ccCCCCccccHHHHH
Q 008389 481 ASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRA-KMPAYWVPKSIVFGP-LPKTATGKIQKHVLR 553 (567)
Q Consensus 481 ~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~ 553 (567)
++|++.++...|+.+.+++++.++. ..+. +++.+++++ +++.+++|..+.+++ +|+|++||++|++|+
T Consensus 468 ~~v~~~~~~~~g~~~~a~v~~~~~~-~~~~----~~l~~~~~~~~l~~~~~P~~i~~v~~iP~t~~gKv~r~~L~ 537 (538)
T TIGR03208 468 VAIVAYPDERLGERACAVVVPKPGC-TLDF----AAMVAFLKAQKVALQYIPERLEVVDALPATPAGKIQKFRLR 537 (538)
T ss_pred EEEEeccCCCCCceEEEEEEECCCC-CCCH----HHHHHHHHhcchhhccCCcEEEEeccCCCCCccccchHhhc
Confidence 9999999888889999999987764 4444 567888885 799999999999888 999999999999986
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. |
| >PLN02387 long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-66 Score=559.18 Aligned_cols=518 Identities=21% Similarity=0.256 Sum_probs=398.2
Q ss_pred cCHHHHHhhhhhcCCCceeEEEC------------C-----------ccccHHHHHHHHHHHHHHHHHccCCCCCEEEEE
Q 008389 20 LTPLWFLDRAATVHPTRTSVVHG------------S-----------TRYTWLQTYQRCRRLASALCKRSIGLGCTVAII 76 (567)
Q Consensus 20 ~t~~~~l~~~a~~~p~~~a~~~~------------~-----------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~ 76 (567)
.|+.++|++.++.+||++|+.+. + +++||+||.+++.++|+.|.++|+++||+|+|+
T Consensus 58 ~t~~~l~~~~~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~lG~~~gd~Vai~ 137 (696)
T PLN02387 58 TTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCNFASGLVALGHNKEERVAIF 137 (696)
T ss_pred CCHHHHHHHHHHHCCCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence 68999999999999999999542 1 238999999999999999999999999999999
Q ss_pred cCChHHHHHHHHhhhhcCCeeeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecC
Q 008389 77 APNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGD 156 (567)
Q Consensus 77 ~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 156 (567)
++|+++|++++|||+++|++++|+++.++.+++.++++.++++++|++.+....+......++ ..+.++.+++
T Consensus 138 ~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~~~l~~~~~~~~-------~l~~ii~~~~ 210 (696)
T PLN02387 138 ADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQLKKLIDISSQLE-------TVKRVIYMDD 210 (696)
T ss_pred cCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHHHHHHHHhhccC-------CceEEEEECC
Confidence 999999999999999999999999999999999999999999999999877665554433332 4567777764
Q ss_pred CCCCccc-chhccCCChHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHh-ccC
Q 008389 157 ESCDPKD-LKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIW-GMN 234 (567)
Q Consensus 157 ~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~-~~~ 234 (567)
....... ..........+|++++..+...........++|+++|+|||||||.||||.+||++++.++......+ ++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~ 290 (696)
T PLN02387 211 EGVDSDSSLSGSSNWTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVVPKLG 290 (696)
T ss_pred CCchhhhhhhccCCcEEEEHHHHHHhhccCCCCCCCCCccceEEEEecCCCCCCCCEEEEEcHHHHHHHHHHHhhcCCCC
Confidence 3211100 00001112345666665443222222334678999999999999999999999999998887766554 578
Q ss_pred CCcEEEEecCccchhhhHHHHHHhhhcCeeEEeccC------C--HHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCC--
Q 008389 235 EGAVYLWTLPMFHCNGWCYTWSLAALCGTSICLRQV------T--AKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSED-- 304 (567)
Q Consensus 235 ~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~~------~--~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~-- 304 (567)
++|++++.+|++|.+++.....++..|+++.+-... + +..++..+++++||++.++|.+++.+.+.....
T Consensus 291 ~~d~~l~~lPl~Hi~~~~~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~~~vP~~l~~l~~~~~~~~~ 370 (696)
T PLN02387 291 KNDVYLAYLPLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAILDRVRDGVRKKVD 370 (696)
T ss_pred CCCEEEEECcHHHHHHHHHHHHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcEEEehhHHHHHHHHHHHHHHh
Confidence 999999999999999988766666666665443221 1 234567899999999999999999987431100
Q ss_pred -----------------------------C---------------cCCCCchhhhhccCCCCCHHHHHHHHh-cCCeeee
Q 008389 305 -----------------------------T---------------ILPLPHVVHVNTAGAAPPPSVLHAMSQ-KGFHVTH 339 (567)
Q Consensus 305 -----------------------------~---------------~~~l~~lr~i~~~G~~l~~~~~~~~~~-~~~~i~~ 339 (567)
. ....+++|.+++||+++++++.++++. +++++++
T Consensus 371 ~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGapl~~~~~~~~~~~~g~~v~~ 450 (696)
T PLN02387 371 AKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICLGAPIGQ 450 (696)
T ss_pred cccHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHHHcCCCeeE
Confidence 0 000157899999999999999888884 6999999
Q ss_pred ccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccC-CCCCceEEEEEecccccccccC
Q 008389 340 TYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVP-ADGKTIGEIVMSGNVVMKGYLK 418 (567)
Q Consensus 340 ~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~-~~~~~~Gei~v~~~~~~~gy~~ 418 (567)
.||+||+++.++.+... ....+++|.|+|++ +++|+|.+++.... ......|||+++|++++.|||+
T Consensus 451 ~YG~TEt~~~~~~~~~~-----------~~~~gsvG~p~p~~-evkivd~~~~~~~~~~~~~p~GEi~vrGp~v~~GY~~ 518 (696)
T PLN02387 451 GYGLTETCAGATFSEWD-----------DTSVGRVGPPLPCC-YVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGYFK 518 (696)
T ss_pred eechhhcccceeecCcc-----------cCCCCccCCCCCce-EEEEeeccccCcccCCCCCCCceEEeccCcccchhcC
Confidence 99999998766543211 11247899999999 89999944343221 1111459999999999999999
Q ss_pred CCccchhccc---CC--ccccCceEEEeCCCcEEEeccccceeee-CceecchHHHHHHHhcCCCceeeEEEEeecCCCC
Q 008389 419 NPKANEETFA---NG--WYHTGDLGVKHPDNYIEIKDRSKDIIIS-GGENISSVEVENMMYLHPAVLEASVVARADERWG 492 (567)
Q Consensus 419 ~~~~~~~~~~---~g--~~~TGDl~~~~~~g~l~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g 492 (567)
+++.+.+.|. +| ||+|||+|++|+||++++.||.+|+||. +|++|+|.+||+++.++|.|.+++|++.+..
T Consensus 519 ~pe~T~~~f~~d~~G~~W~~TGDig~~d~dG~l~i~gR~kd~ik~~~Ge~I~p~eIE~~l~~~p~V~~~~V~g~~~~--- 595 (696)
T PLN02387 519 NQEKTDEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSVSPYVDNIMVHADPFH--- 595 (696)
T ss_pred CHHHHhhhhccccCCCceeecCceEEECCCCcEEEEEcccceEECCCCeEEchHHHHHHHhcCCCeeEEEEEecCCc---
Confidence 9999999883 35 9999999999999999999999999996 7999999999999999999999999987632
Q ss_pred CcceEEEEEcCCcc------------c--------hhhHHHHHHHHHHH-HhcCCCCCCCceeecCc--cc-----CCCC
Q 008389 493 ESPCAFVTLKPEVD------------K--------SNEQQLAEDIMKFC-RAKMPAYWVPKSIVFGP--LP-----KTAT 544 (567)
Q Consensus 493 ~~~~~~v~~~~~~~------------~--------~~~~~~~~~l~~~l-~~~l~~~~~p~~i~~~~--lP-----~t~~ 544 (567)
..++++|++.++.- . ...+.+.+.+.+.. +++|+.+.+|+.|.+.+ +. .|++
T Consensus 596 ~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~~~~i~l~~~~~t~~~g~lT~t 675 (696)
T PLN02387 596 SYCVALVVPSQQALEKWAKKAGIDYSNFAELCEKEEAVKEVQQSLSKAAKAARLEKFEIPAKIKLLPEPWTPESGLVTAA 675 (696)
T ss_pred ceEEEEEEeCHHHHHHHHHHcCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEECCCCCCCCCcCChh
Confidence 34788888765310 0 00112223333332 34699999999998766 32 7889
Q ss_pred ccccHHHHHHHHHHc
Q 008389 545 GKIQKHVLRAKAKEM 559 (567)
Q Consensus 545 GKi~r~~l~~~~~~~ 559 (567)
.|++|+.+++.|++.
T Consensus 676 ~K~~R~~i~~~y~~~ 690 (696)
T PLN02387 676 LKLKREQIRKKFKDD 690 (696)
T ss_pred hhhhhHHHHHHHHHH
Confidence 999999999999874
|
|
| >PLN02430 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-66 Score=554.82 Aligned_cols=520 Identities=21% Similarity=0.267 Sum_probs=396.4
Q ss_pred ccCHHHHHhhhhhcCCCceeEEEC----C-----ccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHh
Q 008389 19 ALTPLWFLDRAATVHPTRTSVVHG----S-----TRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFG 89 (567)
Q Consensus 19 ~~t~~~~l~~~a~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA 89 (567)
..|++++|++.++++|+++|+.+. + .++||+|+.+++.++|..|.+.|+++||+|+|+++|+++|++++||
T Consensus 41 ~~t~~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~ew~~~~lA 120 (660)
T PLN02430 41 ITTAWDIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEA 120 (660)
T ss_pred CCCHHHHHHHHHHhCCCCceEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 368999999999999999999752 1 2479999999999999999999999999999999999999999999
Q ss_pred hhhcCCeeeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccC
Q 008389 90 VPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALG 169 (567)
Q Consensus 90 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 169 (567)
|+++|++++|+++.++++++.++++.++++++|++......... .... .......++.++.............+
T Consensus 121 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~--~~~~----~~~~l~~ii~~~~~~~~~~~~~~~~~ 194 (660)
T PLN02430 121 CAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELLE--PDCK----SAKRLKAIVSFTSVTEEESDKASQIG 194 (660)
T ss_pred HHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHHHHHh--hhcc----cCCCceEEEEECCCChHHhhhhhcCC
Confidence 99999999999999999999999999999999998753221111 0000 00134556666432111000000011
Q ss_pred CChHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHH---h--ccCCCcEEEEecC
Q 008389 170 RGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALI---W--GMNEGAVYLWTLP 244 (567)
Q Consensus 170 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~---~--~~~~~d~~~~~~p 244 (567)
....+|++++..+........+..++++++++|||||||.||||.+||+++..++...... + +++++|++++.+|
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~~~~~~~~~~~~~~~~~~~~~~~~d~~ls~lP 274 (660)
T PLN02430 195 VKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLP 274 (660)
T ss_pred cEEEEHHHHHHhhccCCCCCCCcCcCceEEEEECCCCCCCCCEEEeecHHHHHHHHHHHhhccccccCCCCCCEEEEeCc
Confidence 1234677776554322222233467899999999999999999999999998877654332 2 4678999999999
Q ss_pred ccchhhhHHHHHHhhhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCC---------------------
Q 008389 245 MFHCNGWCYTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSE--------------------- 303 (567)
Q Consensus 245 ~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~--------------------- 303 (567)
++|.+++......+..|+++++.. .++..+++.|++++||++.++|.+|+.+.+....
T Consensus 275 l~H~~~~~~~~~~l~~G~~i~~~~-~~~~~l~~~l~~~~pt~~~~vP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~ 353 (660)
T PLN02430 275 LAHILDRMIEEYFFRKGASVGYYH-GDLNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKL 353 (660)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEeC-CChhhHHHHHHHhCCcEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 999999877666666677766654 4788999999999999999999999887642100
Q ss_pred ------------CCc-----------CCCCchhhhhccCCCCCHHHHHHHHhcC-CeeeeccCCccCcCCcccccCCCCC
Q 008389 304 ------------DTI-----------LPLPHVVHVNTAGAAPPPSVLHAMSQKG-FHVTHTYGLSETYGPSTVCAWKPEW 359 (567)
Q Consensus 304 ------------~~~-----------~~l~~lr~i~~~G~~l~~~~~~~~~~~~-~~i~~~YG~tE~~~~~~~~~~~~~~ 359 (567)
... ...+++|.+++||+++++++.++++..+ +.+++.||+||+++.++.....
T Consensus 354 ~~~~~~~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~--- 430 (660)
T PLN02430 354 AWMNRGYSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLRVTSCAFVVQGYGLTETLGPTTLGFPD--- 430 (660)
T ss_pred HHHhcCCCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHHHHHHHhcCCCeeeecchhhhhhceEeeccc---
Confidence 000 0015789999999999999988777765 6899999999998766543211
Q ss_pred CCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEecccccccccCCCccchhcccCCccccCceEE
Q 008389 360 DSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGV 439 (567)
Q Consensus 360 ~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~ 439 (567)
.....+++|.|.+++ ++++.|.......+.+.+..|||+|+|++++.|||++++.+...|.+|||+|||+|+
T Consensus 431 -------~~~~~gsvG~p~~~~-evki~d~~~~g~~~~~~~~~GEi~vrg~~v~~GY~~~~e~t~~~~~dGw~~TGDig~ 502 (660)
T PLN02430 431 -------EMCMLGTVGAPAVYN-ELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYYKNPELTEEVMKDGWFHTGDIGE 502 (660)
T ss_pred -------cCCCCCCccCCCCce-EEEEEEcCCcCcccCCCCCcceEEecCCCccccccCChHHhhhhhhccceeccceEE
Confidence 012247899999999 899987322222222322579999999999999999999999999999999999999
Q ss_pred EeCCCcEEEeccccceee-eCceecchHHHHHHHhcCCCceeeEEEEeecCCCCCcceEEEEEcCCcc-----------c
Q 008389 440 KHPDNYIEIKDRSKDIII-SGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVD-----------K 507 (567)
Q Consensus 440 ~~~~g~l~~~GR~~d~i~-~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~-----------~ 507 (567)
+++||++++.||.+|+|+ .+|++|+|.+||+++.++|.|.+++|++.. .++.++|+|+++++.- .
T Consensus 503 ~d~dG~l~i~gR~kd~ik~~~G~~V~p~~IE~~l~~~p~V~~~~V~G~~---~~~~~~A~vv~~~~~~~~~~~~~~~~~~ 579 (660)
T PLN02430 503 ILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNPIVEDIWVYGDS---FKSMLVAVVVPNEENTNKWAKDNGFTGS 579 (660)
T ss_pred ECCCCcEEEEEcccccEEcCCCcEEchHHHHHHHhcCCCeeEEEEEecC---CcceEEEEEEcCHHHHHHHHHhCCCCCC
Confidence 999999999999999999 579999999999999999999999999843 2467899998865320 0
Q ss_pred ----hhhHHHH----HHHHHHH-HhcCCCCCCCceeecCc--c-----cCCCCccccHHHHHHHHHHc
Q 008389 508 ----SNEQQLA----EDIMKFC-RAKMPAYWVPKSIVFGP--L-----PKTATGKIQKHVLRAKAKEM 559 (567)
Q Consensus 508 ----~~~~~~~----~~l~~~l-~~~l~~~~~p~~i~~~~--l-----P~t~~GKi~r~~l~~~~~~~ 559 (567)
.+..++. +++.+.. +++|+.+.+++.+.+.+ + .+|+++|++|+.+.+.|++.
T Consensus 580 ~~~~~~~~~~~~~i~~~i~~~~~~~~l~~~e~i~~~~l~~~~~~~~~g~lT~t~K~~R~~i~~~y~~~ 647 (660)
T PLN02430 580 FEELCSLPELKEHILSELKSTAEKNKLRGFEYIKGVILETKPFDVERDLVTATLKKRRNNLLKYYQVE 647 (660)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHhCCCCceeeeEEEEECCCCCCcCCcCChhhhhhhHHHHHHHHHH
Confidence 0011223 3333333 23599999999998765 3 28999999999999988764
|
|
| >PRK07514 malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-65 Score=533.19 Aligned_cols=496 Identities=24% Similarity=0.354 Sum_probs=417.6
Q ss_pred ccCHHHHHhhhhhcCCCceeEEE-CCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCee
Q 008389 19 ALTPLWFLDRAATVHPTRTSVVH-GSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVL 97 (567)
Q Consensus 19 ~~t~~~~l~~~a~~~p~~~a~~~-~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~ 97 (567)
..++.+++.+.+ .+|+++|+.+ .++.+||.||.+++.++|..|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus 2 ~~~l~~~~~~~~-~~~~~~a~~~~~~~~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la~~~~G~~~ 80 (504)
T PRK07514 2 NNNLFDALRAAF-ADRDAPFIETPDGLRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRAGAVF 80 (504)
T ss_pred CccHHHHHHHHh-hCCCCeEEEeCCCCEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEE
Confidence 458899999999 9999999998 56789999999999999999999999999999999999999999999999999999
Q ss_pred eeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHHHH
Q 008389 98 NAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEK 177 (567)
Q Consensus 98 v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (567)
+|+++..+.+++..+++.+++++++++....+.+....... ....++.++.... ..+.+
T Consensus 81 v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~-------------~~~~~ 139 (504)
T PRK07514 81 LPLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAAA--------GAPHVETLDADGT-------------GSLLE 139 (504)
T ss_pred EECCCCCCHHHHHHHHHhCCCcEEEEccchhHHHHHhhhcc--------CCceEEEecCCCc-------------ccHHH
Confidence 99999999999999999999999999987766554432211 1222444432211 11111
Q ss_pred HHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhhHHHH-H
Q 008389 178 FLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTW-S 256 (567)
Q Consensus 178 ~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~-~ 256 (567)
....... .........+++++++|||||||.||+|.++|+++...+......+++..+|++++.+|++|..|+...+ .
T Consensus 140 ~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~ 218 (504)
T PRK07514 140 AAAAAPD-DFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRFTPDDVLIHALPIFHTHGLFVATNV 218 (504)
T ss_pred hhhhcCc-ccCcccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCccEEEEecchHHHHHHHHHHHH
Confidence 1111111 1112335678999999999999999999999999999988888888899999999999999999987544 4
Q ss_pred HhhhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHHHh-cCC
Q 008389 257 LAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQ-KGF 335 (567)
Q Consensus 257 ~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~-~~~ 335 (567)
....|++++..+..++..+++.+ .++|.+.++|+++..+++........ ++++|.+++||+++++++.+.+.+ .++
T Consensus 219 ~l~~G~~~~~~~~~~~~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~~~~gg~~~~~~~~~~~~~~~~~ 295 (504)
T PRK07514 219 ALLAGASMIFLPKFDPDAVLALM--PRATVMMGVPTFYTRLLQEPRLTREA-AAHMRLFISGSAPLLAETHREFQERTGH 295 (504)
T ss_pred HHhcCcEEEECCCCCHHHHHHHH--HhheeeecHHHHHHHHHcCCCCCccc-ccceeeEEecCCCCCHHHHHHHHHHhCC
Confidence 55667777777778999999999 47999999999999998775544444 789999999999999999999985 588
Q ss_pred eeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEeccccccc
Q 008389 336 HVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKG 415 (567)
Q Consensus 336 ~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~~g 415 (567)
++++.||+||++....... . .......+|.|++++ .++|+|++++.+++.| +.|||+++|+.++.|
T Consensus 296 ~~~~~YG~tE~~~~~~~~~-~----------~~~~~~~~G~~~~~~-~v~i~d~~~~~~~~~g--~~Gel~i~~~~~~~g 361 (504)
T PRK07514 296 AILERYGMTETNMNTSNPY-D----------GERRAGTVGFPLPGV-SLRVTDPETGAELPPG--EIGMIEVKGPNVFKG 361 (504)
T ss_pred cceeecccccccccccCCc-c----------ccccCcccccCCCCc-EEEEEECCCCCCCCCC--CceEEEEecCCcccc
Confidence 9999999999865433211 0 112236789999999 8999997889999988 789999999999999
Q ss_pred ccCCCccchhccc-CCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeecCCCCCc
Q 008389 416 YLKNPKANEETFA-NGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGES 494 (567)
Q Consensus 416 y~~~~~~~~~~~~-~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~ 494 (567)
|+++++.+...|. +|||+|||+|+++++|.+++.||.+|+|+.+|.+++|.+||..+.++++|.+++|++.++...|+.
T Consensus 362 y~~~~~~~~~~~~~~~~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~ 441 (504)
T PRK07514 362 YWRMPEKTAEEFRADGFFITGDLGKIDERGYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGEG 441 (504)
T ss_pred ccCCchhhhhhcccCCCeeecceEEEcCCccEEEeccccceEEeCCeEECHHHHHHHHHhCCCeeEEEEEeCCCCCcCce
Confidence 9999999988885 899999999999999999999999999999999999999999999999999999999998887888
Q ss_pred ceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHHHHc
Q 008389 495 PCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKEM 559 (567)
Q Consensus 495 ~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~ 559 (567)
++++++..++. ..+. +++++.++++++++++|..+++++ +|+|++||++|++|++++.+.
T Consensus 442 ~~~~~~~~~~~-~~~~----~~l~~~~~~~l~~~~~p~~i~~v~~~p~t~~gK~~r~~l~~~~~~~ 502 (504)
T PRK07514 442 VTAVVVPKPGA-ALDE----AAILAALKGRLARFKQPKRVFFVDELPRNTMGKVQKNLLREQYADL 502 (504)
T ss_pred EEEEEEECCCC-CCCH----HHHHHHHHhhcccCCCCcEEEEeccCCCCCCcceeHHHHHHHHHhh
Confidence 99999987654 3344 678899999999999999999888 999999999999999998764
|
|
| >PRK12476 putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-66 Score=550.12 Aligned_cols=504 Identities=21% Similarity=0.260 Sum_probs=395.2
Q ss_pred cccCHHHHHhhhhhcCCCceeEEECC---------ccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHH
Q 008389 18 MALTPLWFLDRAATVHPTRTSVVHGS---------TRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHF 88 (567)
Q Consensus 18 ~~~t~~~~l~~~a~~~p~~~a~~~~~---------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~l 88 (567)
+.+|+.++++++++++|+++|+++.+ +++||+||.+++.++|++|.+. +++||+|+++++|++++++++|
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~V~l~~~n~~e~~~~~l 110 (612)
T PRK12476 32 PGTTLISLIERNIANVGDTVAYRYLDHSHSAAGCAVELTWTQLGVRLRAVGARLQQV-AGPGDRVAILAPQGIDYVAGFF 110 (612)
T ss_pred ccCcHHHHHHHHHHhCCCceEEEEEccCCCCCCcceEEeHHHHHHHHHHHHHHHHHh-cCCCCEEEEECCCChhHHHHHH
Confidence 34799999999999999999998732 4899999999999999999986 9999999999999999999999
Q ss_pred hhhhcCCeeeec-cccCC--hHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccch
Q 008389 89 GVPMAGAVLNAV-NIRLN--APTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLK 165 (567)
Q Consensus 89 A~~~~G~~~v~i-~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 165 (567)
||+++|++++|+ ++.++ .+++.++++.++++++|++.+..+.+......+.. .....++.++....
T Consensus 111 A~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~------ 179 (612)
T PRK12476 111 AAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLRNLPR-----LRRPRVIAIDAIPD------ 179 (612)
T ss_pred HHHHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHHHHHHHHhhccc-----ccCceEEEeccccc------
Confidence 999999999999 57666 78999999999999999988776555443222110 01123444332100
Q ss_pred hccCCChHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhc-cCCCcEEEEecC
Q 008389 166 YALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWG-MNEGAVYLWTLP 244 (567)
Q Consensus 166 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~-~~~~d~~~~~~p 244 (567)
...... ...+..++++++|+|||||||.||||.++|+++.+++......++ +.+++++++.+|
T Consensus 180 ---------------~~~~~~-~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~P 243 (612)
T PRK12476 180 ---------------SAGESF-VPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSIDLLDRNTHGVSWLP 243 (612)
T ss_pred ---------------cccccc-cCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHhccCCCCceEEEeCC
Confidence 000000 011245689999999999999999999999999888777666677 788999999999
Q ss_pred ccchhhhHHHHHHhhhcCeeEEecc--C--CHHHHHHHHH--hhCceEeeeCcHHHHHHHcCCC----CCCcCCCCchhh
Q 008389 245 MFHCNGWCYTWSLAALCGTSICLRQ--V--TAKAVYSAIA--KYGVTHFCAAPVVLNSIVNAPS----EDTILPLPHVVH 314 (567)
Q Consensus 245 ~~~~~g~~~~~~~~~~g~~~~~~~~--~--~~~~~~~~i~--~~~~t~l~~~p~~~~~l~~~~~----~~~~~~l~~lr~ 314 (567)
++|..|+...+..++.|++.+++.+ + ++..+++.++ +++++.+..+|+++..++.... ..... ++++|
T Consensus 244 l~h~~g~~~~~~~~~~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~-l~~lr- 321 (612)
T PRK12476 244 LYHDMGLSMIGFPAVYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLPAEGDDID-LSNVV- 321 (612)
T ss_pred cccccchHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcChhhhcCcc-hhHhe-
Confidence 9999999887888888888887753 2 7899999995 5899999999999888776421 12223 78899
Q ss_pred hhccCCCCCHHHHHHHHhc----CC---eeeeccCCccCcCCcccccCCCCC-----C-----------CCChhhhhhhh
Q 008389 315 VNTAGAAPPPSVLHAMSQK----GF---HVTHTYGLSETYGPSTVCAWKPEW-----D-----------SLPPETQARMK 371 (567)
Q Consensus 315 i~~~G~~l~~~~~~~~~~~----~~---~i~~~YG~tE~~~~~~~~~~~~~~-----~-----------~~~~~~~~~~~ 371 (567)
+++||+++++++.+.+.+. |+ ++++.||+||++..++........ . ..+........
T Consensus 322 ~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 401 (612)
T PRK12476 322 LIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKPSYGIAEATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAH 401 (612)
T ss_pred EEecccCCCHHHHHHHHHHHHhcCCCccccccccchhhhheeeeccCCCCCceEEEEcHHHhhCCCeeecCCCCCCccee
Confidence 9999999999999998753 43 499999999987554332111000 0 00000000123
Q ss_pred ccCCceeccccceeEeeCCCCCccCCCCCceEEEEEecccccccccCCCccchhccc-------------------CCcc
Q 008389 372 ARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFA-------------------NGWY 432 (567)
Q Consensus 372 ~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~-------------------~g~~ 432 (567)
+++|.|++++ ++.|+|++++++++.| +.|||+++|++++.|||++++.+.+.|. ++||
T Consensus 402 ~~~G~~~~g~-~v~ivd~~~g~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~ 478 (612)
T PRK12476 402 VSCGQVARSQ-WAVIVDPDTGAELPDG--EVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWL 478 (612)
T ss_pred EeCCCcCCCC-EEEEEeCCCCcCCCCC--CEEEEEEcCCcccccccCChHHHHHHHhhhhccccccccccccccCCCCee
Confidence 5789999999 8999998879999988 8999999999999999999999988874 2599
Q ss_pred ccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhc-CCCcee--eEEEEeecCCCCCcceEEEEEcCCccchh
Q 008389 433 HTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYL-HPAVLE--ASVVARADERWGESPCAFVTLKPEVDKSN 509 (567)
Q Consensus 433 ~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~-~~~i~~--~~v~~~~~~~~g~~~~~~v~~~~~~~~~~ 509 (567)
+|||+|+++ ||+++++||++|+||++|++|+|.+||+++.+ +|.|.+ +++++.+++. +++++++++++++....+
T Consensus 479 ~TGDlg~~~-dG~l~i~GR~~d~I~~~G~~I~p~eIE~~l~~~~p~V~~~~v~v~~~~~~~-~~~~~~~v~~~~~~~~~~ 556 (612)
T PRK12476 479 RTGDLGVYL-DGELYITGRIADLIVIDGRNHYPQDIEATVAEASPMVRRGYVTAFTVPAED-NERLVIVAERAAGTSRAD 556 (612)
T ss_pred eccccceeE-CCEEEEEeccCcEEEECCcccCHHHHHHHHHHhcccccCCcEEEEEecCCC-cceEEEEEEecCCccccc
Confidence 999999985 99999999999999999999999999999985 799999 6677888776 789999999887643345
Q ss_pred hHHHHHHHHHHHHhcCC-CCCC-CceeecCc---ccCCCCccccHHHHHHHHHHcC
Q 008389 510 EQQLAEDIMKFCRAKMP-AYWV-PKSIVFGP---LPKTATGKIQKHVLRAKAKEMG 560 (567)
Q Consensus 510 ~~~~~~~l~~~l~~~l~-~~~~-p~~i~~~~---lP~t~~GKi~r~~l~~~~~~~~ 560 (567)
.+ ++.+++++.+. .+.+ |..+.|++ ||+|++||++|++|++++.+..
T Consensus 557 ~~----~l~~~~~~~l~~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~L~~~~~~~~ 608 (612)
T PRK12476 557 PA----PAIDAIRAAVSRRHGLAVADVRLVPAGAIPRTTSGKLARRACRAQYLDGR 608 (612)
T ss_pred HH----HHHHHHHHHHHHhhCCcceEEEEECCCCcCcCCchHHHHHHHHHHHHcCC
Confidence 53 44445555544 3556 56777654 9999999999999999987764
|
|
| >PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-65 Score=535.52 Aligned_cols=499 Identities=25% Similarity=0.386 Sum_probs=408.9
Q ss_pred cCHHHHHhhhhhcCCCceeEEECC-----ccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcC
Q 008389 20 LTPLWFLDRAATVHPTRTSVVHGS-----TRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAG 94 (567)
Q Consensus 20 ~t~~~~l~~~a~~~p~~~a~~~~~-----~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G 94 (567)
-|+.++|++.++++|+++|+++.+ +.+||.||+++++++|..|.++|+++||+|+++++|++++++++|||+++|
T Consensus 7 ~~l~~~~~~~a~~~p~~~a~~~~~~~~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~la~~~~G 86 (517)
T PRK08008 7 QHLRQMWDDLADVYGHKTALIFESSGGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIG 86 (517)
T ss_pred ccHHHHHHHHHHHCCCceEEEcccCCCccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcC
Confidence 379999999999999999999864 789999999999999999999999999999999999999999999999999
Q ss_pred CeeeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHH
Q 008389 95 AVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVE 174 (567)
Q Consensus 95 ~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 174 (567)
++++++++..+.+++.++++.+++++++++.+..+.+.+...... .....++..+..... ......
T Consensus 87 ~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~--------~~~~~~ 152 (517)
T PRK08008 87 AIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDA------TPLRHICLTRVALPA--------DDGVSS 152 (517)
T ss_pred eEEEEcCcccCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhcc------ccCcEEEEecCCCcc--------cccccC
Confidence 999999999999999999999999999999887766655433221 123444444432111 112234
Q ss_pred HHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhhHHH
Q 008389 175 YEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYT 254 (567)
Q Consensus 175 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~ 254 (567)
++++............+...+++++++|||||||.||+|.++|.++............+..++++++.+|++|..+....
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 232 (517)
T PRK08008 153 FTQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTA 232 (517)
T ss_pred HHHHhccCCccccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhcCCCCCCeEEEecCcHHHHHHHHH
Confidence 44444333222222233456899999999999999999999999998654433333457889999999999998776554
Q ss_pred -HHHhhhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHHHh-
Q 008389 255 -WSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQ- 332 (567)
Q Consensus 255 -~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~- 332 (567)
+..+..|+++++...+++..+++.++++++|++.++|++++.+.......... ...++.+.++ .+++++....+.+
T Consensus 233 ~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~l~~~~~~-~~~~~~~~~~~~~~ 310 (517)
T PRK08008 233 AMAAFSAGATFVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQPPSANDR-QHCLREVMFY-LNLSDQEKDAFEER 310 (517)
T ss_pred HHHHHhcCcEEEEccccCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCccccc-cccceeeEEe-cCCCHHHHHHHHHH
Confidence 44555677777777889999999999999999999999999988765433322 4567766665 4788888887774
Q ss_pred cCCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEec---
Q 008389 333 KGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSG--- 409 (567)
Q Consensus 333 ~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~--- 409 (567)
+++++++.||+||+++.+....... .....++|.|++++ +++|+|++ +++++.| +.|||+++|
T Consensus 311 ~~~~~~~~YG~tE~~~~~~~~~~~~----------~~~~~~~G~~~~g~-~~~i~d~~-~~~~~~g--~~Gel~v~g~~~ 376 (517)
T PRK08008 311 FGVRLLTSYGMTETIVGIIGDRPGD----------KRRWPSIGRPGFCY-EAEIRDDH-NRPLPAG--EIGEICIKGVPG 376 (517)
T ss_pred hCCeEEeeccccccccccccCCccc----------cccCCccccCCCCc-EEEEECCC-CCCCCCC--CcceEEEeCCCC
Confidence 5999999999999976554322111 12236799999999 89999976 8899888 789999998
Q ss_pred ccccccccCCCccchhccc-CCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeec
Q 008389 410 NVVMKGYLKNPKANEETFA-NGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARAD 488 (567)
Q Consensus 410 ~~~~~gy~~~~~~~~~~~~-~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~ 488 (567)
+.++.||+++++.+.+.|. +|||+|||+|+++++|.+++.||.+|+|+.+|++++|.+||.++.+++.|.+++|++.++
T Consensus 377 ~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~iE~~l~~~~~v~~~~v~g~~~ 456 (517)
T PRK08008 377 KTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKD 456 (517)
T ss_pred cchhhhHhCChHHHhhcccCCCCeeccceEEECCCCcEEEeecccceEEeCCEEECHHHHHHHHHhCCceeeEEEEccCC
Confidence 5899999999999988884 899999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHH
Q 008389 489 ERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLR 553 (567)
Q Consensus 489 ~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~ 553 (567)
...++.+.++++++++. ..+. ++++++++++++.+++|..+.+++ +|+|++||++|+.|+
T Consensus 457 ~~~~~~~~~~v~~~~~~-~~~~----~~l~~~~~~~l~~~~~P~~~~~v~~iP~t~~gK~~r~~l~ 517 (517)
T PRK08008 457 SIRDEAIKAFVVLNEGE-TLSE----EEFFAFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIKKNLK 517 (517)
T ss_pred CCCCceEEEEEEECCCC-CCCH----HHHHHHHHhhcccccCCcEEEEeccCCCCCccceehhhcC
Confidence 88788999999988765 3344 688899999999999999999888 999999999999874
|
|
| >PRK10946 entE enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-65 Score=534.85 Aligned_cols=505 Identities=23% Similarity=0.364 Sum_probs=412.6
Q ss_pred hhcccCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCC
Q 008389 16 NYMALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGA 95 (567)
Q Consensus 16 ~~~~~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~ 95 (567)
.|.+.++.++|+++++ |+++|+++.++++||+||++++.++|..|.+.|+++|++|+++++|++++++++|||+++|+
T Consensus 21 ~~~~~~~~~~~~~~a~--p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v~~~n~~~~~~~~la~~~~G~ 98 (536)
T PRK10946 21 YWQDLPLTDILTRHAA--SDAIAVICGERQFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFALLKLGV 98 (536)
T ss_pred eecCccHHHHHHHhhC--CCCeEEEeCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCChHHHHHHHHHHHHcCe
Confidence 3567899999999887 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccccCChHHHHHHHhccCceEEEEcccchHHH-HHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHH
Q 008389 96 VLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLA-EEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVE 174 (567)
Q Consensus 96 ~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 174 (567)
+++++.+.....++..+++.+++++++++.+..... ......+... ......++..... ....
T Consensus 99 v~v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~-------------~~~~ 162 (536)
T PRK10946 99 APVNALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAE---HSSLRVVLLLNDD-------------GEHS 162 (536)
T ss_pred EEecCCccccHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHhh---CCCceEEEEecCC-------------CCcc
Confidence 888777777788899999999999999986532110 0111111110 0022222222211 1122
Q ss_pred HHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhhHH-
Q 008389 175 YEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCY- 253 (567)
Q Consensus 175 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~- 253 (567)
+++++....... ...+..++++++++|||||||.||+|.++|+++...+......++++.+|++++.+|++|.+++..
T Consensus 163 ~~~~~~~~~~~~-~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~~ 241 (536)
T PRK10946 163 LDDAINHPAEDF-TATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICGFTPQTRYLCALPAAHNYPMSSP 241 (536)
T ss_pred HHHHhhCccccc-ccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCceEEEecCccccccchhh
Confidence 334443332211 123346789999999999999999999999999999888888889999999999999999888763
Q ss_pred -HHHHhhhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCC-CcCCCCchhhhhccCCCCCHHHHHHHH
Q 008389 254 -TWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSED-TILPLPHVVHVNTAGAAPPPSVLHAMS 331 (567)
Q Consensus 254 -~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~-~~~~l~~lr~i~~~G~~l~~~~~~~~~ 331 (567)
.+.++..|+++++...+++..++++++++++|++.++|..+..+++..... ....++++|.+++||+++++++.+.+.
T Consensus 242 ~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~l~~~~~~~~~ 321 (536)
T PRK10946 242 GALGVFLAGGTVVLAPDPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGSRAQLASLKLLQVGGARLSETLARRIP 321 (536)
T ss_pred hHHHHhhcCcEEEECCCCCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCccccccceeEEEECCCCCCHHHHHHHH
Confidence 456677788887777889999999999999999999999999998753211 112277899999999999999999987
Q ss_pred h-cCCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCcee-ccccceeEeeCCCCCccCCCCCceEEEEEec
Q 008389 332 Q-KGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRF-IGLEKLDVIDTRTQQPVPADGKTIGEIVMSG 409 (567)
Q Consensus 332 ~-~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~ 409 (567)
+ +++++++.||+||+..... .... .......++|.|+ |++ .++|+|.+ +++++.| +.|||+++|
T Consensus 322 ~~~g~~~~~~YG~tE~~~~~~-~~~~---------~~~~~~~~~G~p~~~~~-~v~i~d~~-~~~~~~g--~~Gel~v~g 387 (536)
T PRK10946 322 AELGCQLQQVFGMAEGLVNYT-RLDD---------SDERIFTTQGRPMSPDD-EVWVADAD-GNPLPQG--EVGRLMTRG 387 (536)
T ss_pred HhcCCeEEEeecccccceeee-cCCC---------ccccccccCCcccCCCc-eEEEECCC-CCCCCCC--CccEEEEec
Confidence 4 5999999999999643222 1111 0112346789998 677 79999976 8889888 899999999
Q ss_pred ccccccccCCCccchhcc-cCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeec
Q 008389 410 NVVMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARAD 488 (567)
Q Consensus 410 ~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~ 488 (567)
+.++.||+++++.+...| .++||+|||+|+++++|++++.||.+|+++++|++++|.+||..|.++++|.+++|++.++
T Consensus 388 ~~~~~GY~~~~~~t~~~~~~d~~~~TGDl~~~d~~G~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~ 467 (536)
T PRK10946 388 PYTFRGYYKSPQHNASAFDANGFYCSGDLVSIDPDGYITVVGREKDQINRGGEKIAAEEIENLLLRHPAVIHAALVSMED 467 (536)
T ss_pred CccchhhcCCcccchhhcccCCceecCceEEECCCCcEEEeccccceeecCCEEEcHHHHHHHHHhCCCcceEEEEcCCC
Confidence 999999999999998888 5899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhc-CCCCCCCceeecCc-ccCCCCccccHHHHHHHHHHcC
Q 008389 489 ERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAK-MPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKEMG 560 (567)
Q Consensus 489 ~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~-l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~ 560 (567)
...|+.+++++++.++ .+. .++++++++. +++|+.|..+.+++ +|+|++||++|++|++++.+..
T Consensus 468 ~~~g~~~~a~vv~~~~---~~~----~~l~~~~~~~~l~~~~~P~~~~~~~~iP~t~~GKv~r~~L~~~~~~~~ 534 (536)
T PRK10946 468 ELMGEKSCAFLVVKEP---LKA----VQLRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASRA 534 (536)
T ss_pred cccCceEEEEEEeCCC---CCH----HHHHHHHHhCCccccccCcEEEEeccCCCCCCCcccHHHHHHHHHhhc
Confidence 8888999999987654 233 5788888876 99999999999888 9999999999999999987764
|
|
| >PRK12492 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-65 Score=538.52 Aligned_cols=507 Identities=24% Similarity=0.357 Sum_probs=408.3
Q ss_pred cCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHc-cCCCCCEEEEEcCChHHHHHHHHhhhhcCCeee
Q 008389 20 LTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKR-SIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLN 98 (567)
Q Consensus 20 ~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~-g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v 98 (567)
+++.++|++++.++|+++|+.+.++++||.||.++++++|..|.+. |+++||+|+++++|++++++++|||+++|++++
T Consensus 24 ~~~~~~l~~~~~~~p~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~la~~~~G~v~v 103 (562)
T PRK12492 24 KSVVEVFERSCKKFADRPAFSNLGVTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVFGALRAGLIVV 103 (562)
T ss_pred CcHHHHHHHHHHhCCCCeeEecCCceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEe
Confidence 5899999999999999999999889999999999999999999985 999999999999999999999999999999999
Q ss_pred eccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCC--C-----------C--ccc
Q 008389 99 AVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDES--C-----------D--PKD 163 (567)
Q Consensus 99 ~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~-----------~--~~~ 163 (567)
++++.++.+++.++++.++++++++++...+......... ....++...... . . ...
T Consensus 104 ~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (562)
T PRK12492 104 NTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPDT--------GIEYLIEAKMGDLLPAAKGWLVNTVVDKVKKM 175 (562)
T ss_pred ccCccCCHHHHHHHHhccCceEEEeccccchHHHHhhhcc--------CceEEEeechhhccccccchhccccccccccc
Confidence 9999999999999999999999999876655443322110 011111110000 0 0 000
Q ss_pred chhccCCChHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhc---------cC
Q 008389 164 LKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWG---------MN 234 (567)
Q Consensus 164 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~---------~~ 234 (567)
...........+++++...........+...+++++++|||||||.||+|.++|+++..+.......+. +.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~ 255 (562)
T PRK12492 176 VPAYHLPQAVPFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLMK 255 (562)
T ss_pred ccccCCcccccHHHHHhccCCCCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhccccccccccc
Confidence 000000122345555443322111122345688999999999999999999999999877766555442 23
Q ss_pred CC-cEEEEecCccchhhhHHHHHHh-hhcCeeEEe-ccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCc
Q 008389 235 EG-AVYLWTLPMFHCNGWCYTWSLA-ALCGTSICL-RQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPH 311 (567)
Q Consensus 235 ~~-d~~~~~~p~~~~~g~~~~~~~~-~~g~~~~~~-~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~ 311 (567)
.+ ++++..+|++|.+|+...+... ..|+..++. ...++..+++.++++++|++.++|+++..+.+........ +++
T Consensus 256 ~~~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~-~~~ 334 (562)
T PRK12492 256 EGQEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPGFKDLD-FSA 334 (562)
T ss_pred CCCeEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcCccccc-ccc
Confidence 33 5678899999999987555544 445555544 3468899999999999999999999999998876555444 789
Q ss_pred hhhhhccCCCCCHHHHHHHHh-cCCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCC
Q 008389 312 VVHVNTAGAAPPPSVLHAMSQ-KGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTR 390 (567)
Q Consensus 312 lr~i~~~G~~l~~~~~~~~~~-~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~ 390 (567)
+|.+++||+++++++.+.+.+ +++++++.||+||++++++.+.... ....+.+|.|++++ .++|+|++
T Consensus 335 lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~----------~~~~~~~G~p~~~~-~v~ivd~~ 403 (562)
T PRK12492 335 LKLTNSGGTALVKATAERWEQLTGCTIVEGYGLTETSPVASTNPYGE----------LARLGTVGIPVPGT-ALKVIDDD 403 (562)
T ss_pred eeEEEeccccCCHHHHHHHHHHhCCceeeccCccccCceeeecCCcc----------cccCCccceecCCC-EEEEECCC
Confidence 999999999999999999885 5999999999999987665432211 11236789999999 89999986
Q ss_pred CCCccCCCCCceEEEEEecccccccccCCCccchhcc-cCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHH
Q 008389 391 TQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVE 469 (567)
Q Consensus 391 ~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE 469 (567)
+.+++.+ +.|||+++|+.++.||+++++.+...| .+|||+|||+|+++++|.+++.||.+|+|+.+|++++|.+||
T Consensus 404 -~~~~~~g--~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TGD~g~~~~~G~l~i~GR~~~~i~~~G~~i~~~eIE 480 (562)
T PRK12492 404 -GNELPLG--ERGELCIKGPQVMKGYWQQPEATAEALDAEGWFKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNEIE 480 (562)
T ss_pred -CCCCCCC--CceEEEEeCCccccccccCchhhhhcccCCCceecCcEEEECCCCeEEEecccCCeEEECCEEECHHHHH
Confidence 8888887 789999999999999999999988888 479999999999999999999999999999999999999999
Q ss_pred HHHhcCCCceeeEEEEeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCcccc
Q 008389 470 NMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQ 548 (567)
Q Consensus 470 ~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~ 548 (567)
..+.+++.|.+++|++.++...++.++++++..+. ..+. ++++++++++++.+.+|..+.+++ +|+|++||++
T Consensus 481 ~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~--~~~~----~~i~~~~~~~l~~~~~P~~i~~~~~~P~t~~GK~~ 554 (562)
T PRK12492 481 DVVMAHPKVANCAAIGVPDERSGEAVKLFVVARDP--GLSV----EELKAYCKENFTGYKVPKHIVLRDSLPMTPVGKIL 554 (562)
T ss_pred HHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCCC--CCCH----HHHHHHHHHhcccccCCcEEEEeccCCCCCCCcee
Confidence 99999999999999999988888889998886543 2233 678899999999999999999888 9999999999
Q ss_pred HHHHHHH
Q 008389 549 KHVLRAK 555 (567)
Q Consensus 549 r~~l~~~ 555 (567)
|++|+++
T Consensus 555 r~~L~~~ 561 (562)
T PRK12492 555 RRELRDI 561 (562)
T ss_pred HHHHHhh
Confidence 9999875
|
|
| >PRK06164 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-65 Score=536.54 Aligned_cols=519 Identities=23% Similarity=0.274 Sum_probs=415.9
Q ss_pred cccCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCee
Q 008389 18 MALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVL 97 (567)
Q Consensus 18 ~~~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~ 97 (567)
...++.++|++.+..+|+++|++..++++||+||.+++.++|+.|.+.|+++||+|+++++|+.++++++|||+++|+++
T Consensus 8 ~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V~i~~~n~~~~~~~~la~~~~G~~~ 87 (540)
T PRK06164 8 RADTLASLLDAHARARPDAVALIDEDRPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGATV 87 (540)
T ss_pred CCCCHHHHHHHHHHhCCCCeEEecCCCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcHHHHHHHHHHHHhCcEE
Confidence 35689999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccCChHHHHHHHhccCceEEEEcccchHH-HHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHHH
Q 008389 98 NAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKL-AEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYE 176 (567)
Q Consensus 98 v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 176 (567)
+|+++..+.+++.++++.+++++++++.+.... +.+....... ........++.++....... ......+.
T Consensus 88 v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 159 (540)
T PRK06164 88 IAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPP--DALPPLRAIAVVDDAADATP------APAPGARV 159 (540)
T ss_pred EecCCCCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccc--cccCCcceEEEeccCcccCC------CCCccccc
Confidence 999999999999999999999999998765221 1111111100 00012334444432111000 00000111
Q ss_pred HHHhcCCCC---CCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhhHH
Q 008389 177 KFLQTGDPQ---FDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCY 253 (567)
Q Consensus 177 ~~l~~~~~~---~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~ 253 (567)
......... .........+++++++|||||||.||+|.++|.++..+.......+++..++++++.+|++|.+|+..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~ 239 (540)
T PRK06164 160 QLFALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAYGYDPGAVLLAALPFCGVFGFST 239 (540)
T ss_pred ccccccccCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEcCCchhHHHHHH
Confidence 111111100 00011234678999999999999999999999999999888888889999999999999999999987
Q ss_pred HHHHhhhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccC-CCCCHHHHHHHHh
Q 008389 254 TWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAG-AAPPPSVLHAMSQ 332 (567)
Q Consensus 254 ~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G-~~l~~~~~~~~~~ 332 (567)
.+.++..|+++++.+.+++..+++.|+++++|+++++|+++..+.+... .... +++++.+..+| .+...+..+++.+
T Consensus 240 ~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~~-~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~ 317 (540)
T PRK06164 240 LLGALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTAG-ERAD-FPSARLFGFASFAPALGELAALARA 317 (540)
T ss_pred HHHHHhcCceEEecCCCCHHHHHHHHHHhCCeeecCCHHHHHHHHHhhc-ccCC-CcceeeeeeccCCcchHHHHHHHhh
Confidence 7777778888877788899999999999999999999999999988722 2223 78888776665 5666777777777
Q ss_pred cCCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCcee-ccccceeEeeCCCCCccCCCCCceEEEEEeccc
Q 008389 333 KGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRF-IGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNV 411 (567)
Q Consensus 333 ~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~ 411 (567)
.++++++.||+||++++++....... ........|.+. +++ .++|+|++++.+++.| +.|||+++|++
T Consensus 318 ~~~~~~~~YG~tE~~~~~~~~~~~~~--------~~~~~~~~g~~~~~~~-~~~i~d~~~~~~~~~g--~~Gel~v~g~~ 386 (540)
T PRK06164 318 RGVPLTGLYGSSEVQALVALQPATDP--------VSVRIEGGGRPASPEA-RVRARDPQDGALLPDG--ESGEIEIRAPS 386 (540)
T ss_pred cCCceecceeeccccceeeccCCCCC--------CcceeccCccccCCCe-EEEEecCCCCcCCCCC--CeeEEEEeccc
Confidence 79999999999999876554332111 011123456665 677 8999998889999888 89999999999
Q ss_pred ccccccCCCccchhcc-cCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeecCC
Q 008389 412 VMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADER 490 (567)
Q Consensus 412 ~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~ 490 (567)
++.||+++++.+...| .+|||+|||+|+++++|.+++.||.+|+|+++|.+++|.+||+.+.++++|.+++|++.+..
T Consensus 387 ~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~i~p~eIE~~l~~~~~v~~~~v~~~~~~- 465 (540)
T PRK06164 387 LMRGYLDNPDATARALTDDGYFRTGDLGYTRGDGQFVYQTRMGDSLRLGGFLVNPAEIEHALEALPGVAAAQVVGATRD- 465 (540)
T ss_pred ccccccCCchhhhhcccCCCceecCCeEEEcCCceEEEEeecCCeEEECCEEcCHHHHHHHHHhCCCceeEEEEecCCC-
Confidence 9999999999998888 47899999999999999999999999999999999999999999999999999999998843
Q ss_pred CCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCc---cccHHHHHHHHHHcCCcc
Q 008389 491 WGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATG---KIQKHVLRAKAKEMGPVR 563 (567)
Q Consensus 491 ~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~G---Ki~r~~l~~~~~~~~~~~ 563 (567)
.+..+++++++.++. ..+. +++.++++++++.+++|..+.+++ +|+|++| |++|++|++++++..-.+
T Consensus 466 ~~~~~~~~vv~~~~~-~~~~----~~l~~~~~~~l~~~~~P~~i~~~~~~P~t~~g~~~Ki~r~~L~~~~~~~~~~~ 537 (540)
T PRK06164 466 GKTVPVAFVIPTDGA-SPDE----AGLMAACREALAGFKVPARVQVVEAFPVTESANGAKIQKHRLREMAQARLAAE 537 (540)
T ss_pred CceeEEEEEEeCCCC-CCCH----HHHHHHHHhhcccCcCCcEEEEecCCCCCCCCccccccHHHHHHHHHHhhhhh
Confidence 457889999887765 3444 688899999999999999999888 9999998 999999999988765443
|
|
| >PRK13388 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-65 Score=534.94 Aligned_cols=488 Identities=23% Similarity=0.304 Sum_probs=394.1
Q ss_pred ccCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccC-CCCCEEEEEcCChHHHHHHHHhhhhcCCee
Q 008389 19 ALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSI-GLGCTVAIIAPNIPAIYEAHFGVPMAGAVL 97 (567)
Q Consensus 19 ~~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~-~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~ 97 (567)
+.|+.++|.+++ +|+++|+++.+.++||.||.+++.++|..|.+.|+ .+||+|+++++|+++++++++||+++|+++
T Consensus 2 ~~~~~~~l~~~~--~p~~~Al~~~~~~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i~~~n~~~~v~~~lA~~~~Ga~~ 79 (540)
T PRK13388 2 RDTIAQLLRDRA--GDDTIAVRYGDRTWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAAAALGGYVL 79 (540)
T ss_pred chhHHHHHHhhc--cCCceEEEECCceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCcHHHHHHHHHHhCCCEE
Confidence 457888888765 79999999999999999999999999999999999 899999999999999999999999999999
Q ss_pred eeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHHHH
Q 008389 98 NAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEK 177 (567)
Q Consensus 98 v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (567)
+|++|.++.+++.++++.++++++|++.+....+.+.. . ....++.++.. .+.+
T Consensus 80 v~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~--~--------~~~~~i~~~~~----------------~~~~ 133 (540)
T PRK13388 80 VGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLD--L--------PGVRVLDVDTP----------------AYAE 133 (540)
T ss_pred EEecccCChHHHHHHHHhcCCCEEEEChhhhHHHHhhc--c--------cCceEEEccch----------------hhhh
Confidence 99999999999999999999999999887655443210 0 11223333211 1233
Q ss_pred HHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhhHHHHH-
Q 008389 178 FLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWS- 256 (567)
Q Consensus 178 ~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~- 256 (567)
++..... ..+.....++++++++|||||||.||+|.++|+++..........+++..+|+++..+|++|.+++...+.
T Consensus 134 ~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~ 212 (540)
T PRK13388 134 LVAAAGA-LTPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERFGLTRDDVCYVSMPLFHSNAVMAGWAP 212 (540)
T ss_pred hhccccC-cCCCCCCCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHhCCCCCCEEEEeeCchhhcchHHHHHH
Confidence 3321111 11112346689999999999999999999999999988888888889999999999999999998876555
Q ss_pred HhhhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHHH-hcCC
Q 008389 257 LAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMS-QKGF 335 (567)
Q Consensus 257 ~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~-~~~~ 335 (567)
.+..|+++++...+++..+++.++++++|++..+|..+..++......... ...++. ++ |+.+.++..+.+. .+++
T Consensus 213 ~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~~~~~~-~~~l~~-~~-G~~~~~~~~~~~~~~~~~ 289 (540)
T PRK13388 213 AVASGAAVALPAKFSASGFLDDVRRYGATYFNYVGKPLAYILATPERPDDA-DNPLRV-AF-GNEASPRDIAEFSRRFGC 289 (540)
T ss_pred HHHcCcEEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCCCCcccc-ccceEE-EE-CCCCCHHHHHHHHHHhCC
Confidence 455677766666788999999999999999999999999998765432222 345553 33 5566777777776 4589
Q ss_pred eeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceecccccee-----------EeeCCCCCccCCCCCceEE
Q 008389 336 HVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLD-----------VIDTRTQQPVPADGKTIGE 404 (567)
Q Consensus 336 ~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~-----------i~d~~~~~~~~~~~~~~Ge 404 (567)
++++.||+||++.++..... ...+++|.|++++ .+. ++|.+ |+.+..+ ++.||
T Consensus 290 ~l~~~YG~tE~~~~~~~~~~-------------~~~~~vG~p~~g~-~i~~~~~~~~~~~~~~d~~-g~~~~~~-~~~GE 353 (540)
T PRK13388 290 QVEDGYGSSEGAVIVVREPG-------------TPPGSIGRGAPGV-AIYNPETLTECAVARFDAH-GALLNAD-EAIGE 353 (540)
T ss_pred ceecccccccccceeecCCC-------------CCCCCCCCCCCCc-EEEcCCCCccccceeccCc-cccccCC-CcceE
Confidence 99999999999765543210 1236789999886 432 23322 4444222 26899
Q ss_pred EEEe-cccccccccCCCccchhcccCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEE
Q 008389 405 IVMS-GNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASV 483 (567)
Q Consensus 405 i~v~-~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v 483 (567)
|+++ |++++.||+++++.+...|.+|||+|||+|+++++|.+++.||.+|+|+++|.+|+|.+||+++.++++|.+|+|
T Consensus 354 l~v~~g~~~~~gY~~~~~~t~~~~~~g~~~TGD~~~~~~dg~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v 433 (540)
T PRK13388 354 LVNTAGAGFFEGYYNNPEATAERMRHGMYWSGDLAYRDADGWIYFAGRTADWMRVDGENLSAAPIERILLRHPAINRVAV 433 (540)
T ss_pred EEEecCCcccccccCChHHHHHHhhcCceeccceEEEcCCCcEEEeccCCceEEECCEEeCHHHHHHHHHhCCCceEEEE
Confidence 9998 999999999999999988999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHh--cCCCCCCCceeecCc-ccCCCCccccHHHHHHHHHHc
Q 008389 484 VARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRA--KMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKEM 559 (567)
Q Consensus 484 ~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~--~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~ 559 (567)
++.+++..|+.+++++++.++. ..+. .+++++++. .|+.+++|..+++++ ||+|++||++|++|++...+.
T Consensus 434 ~g~~~~~~g~~~~~~v~~~~~~-~~~~----~~l~~~l~~~~~l~~~~~P~~~~~v~~iP~t~~GKv~R~~L~~~~~~~ 507 (540)
T PRK13388 434 YAVPDERVGDQVMAALVLRDGA-TFDP----DAFAAFLAAQPDLGTKAWPRYVRIAADLPSTATNKVLKRELIAQGWAT 507 (540)
T ss_pred EEccCCCCCceeEEEEEECCCC-cCCH----HHHHHHHHhhccCCcccCCcEEEEeccCCCCCcceeeHHhHHHhccCC
Confidence 9999988888899999887765 3444 466777765 499999999999877 999999999999999987555
|
|
| >PRK09088 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-65 Score=528.38 Aligned_cols=477 Identities=25% Similarity=0.386 Sum_probs=397.6
Q ss_pred hhhhhcCCCceeEEE--CCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCeeeeccccC
Q 008389 27 DRAATVHPTRTSVVH--GSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRL 104 (567)
Q Consensus 27 ~~~a~~~p~~~a~~~--~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~ 104 (567)
+.++..+||++|+.+ .++++||.||.+.+.++|..|.+.|+.+||+|+++++|++++++++|||+++|++++|+++..
T Consensus 2 ~~~a~~~p~~~a~~~~~~~~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~~~~~~ 81 (488)
T PRK09088 2 AFHARLQPQRLAAVDLALGRRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLNWRL 81 (488)
T ss_pred chhhhhCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEeeCccC
Confidence 456788999999987 578999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHHHHHHhcCCC
Q 008389 105 NAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDP 184 (567)
Q Consensus 105 ~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 184 (567)
+.+++.++++.++++++|+++..... ....+ .++++......
T Consensus 82 ~~~~~~~~~~~~~~~~ii~~~~~~~~-----------------~~~~~---------------------~~~~~~~~~~~ 123 (488)
T PRK09088 82 SASELDALLQDAEPRLLLGDDAVAAG-----------------RTDVE---------------------DLAAFIASADA 123 (488)
T ss_pred CHHHHHHHHHhCCCCEEEEcchhhcc-----------------ccccc---------------------chhhhhhhccc
Confidence 99999999999999999997654220 00000 01111110000
Q ss_pred C-CCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhhHHHHHHhhh-cC
Q 008389 185 Q-FDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAAL-CG 262 (567)
Q Consensus 185 ~-~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~-g~ 262 (567)
. .........+++++++|||||||.||+|.++|+++...+........+..+|++++.+|++|.+|+...+...+. |+
T Consensus 124 ~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~g~ 203 (488)
T PRK09088 124 LEPADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVGG 203 (488)
T ss_pred cccccCCCCCCCCceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEecchHHHHHHHHHHHHHHhcCC
Confidence 0 001122356789999999999999999999999998887777777778899999999999999998866655554 66
Q ss_pred eeEEeccCCHHHHHHHHH--hhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHHHhcCCeeeec
Q 008389 263 TSICLRQVTAKAVYSAIA--KYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQKGFHVTHT 340 (567)
Q Consensus 263 ~~~~~~~~~~~~~~~~i~--~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~i~~~ 340 (567)
++++...+++..++..+. ++++|+++++|++++.+.+........ ++++|.+++||++++....+.+.+.++++++.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~l~~~~~gG~~~~~~~~~~~~~~g~~v~~~ 282 (488)
T PRK09088 204 SILVSNGFEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQPGFDAAA-LRHLTALFTGGAPHAAEDILGWLDDGIPMVDG 282 (488)
T ss_pred EEEEcCCCCHHHHHHHHHhhccCCcEEeeHHHHHHHHHhCcCcCccc-cccceEEEecCCCCCHHHHHHHHHhCCceeee
Confidence 665666788888888886 489999999999999998765433333 78999999999999999888887779999999
Q ss_pred cCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEecccccccccCCC
Q 008389 341 YGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNP 420 (567)
Q Consensus 341 YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~ 420 (567)
||+||++++........ ......+++|.|.+++ +++|+|++ +++++.+ +.|||+++|++++.||++++
T Consensus 283 YG~TE~~~~~~~~~~~~--------~~~~~~~~vG~~~~~~-~~~i~d~~-~~~~~~g--~~Gel~v~~~~~~~gY~~~~ 350 (488)
T PRK09088 283 FGMSEAGTVFGMSVDCD--------VIRAKAGAAGIPTPTV-QTRVVDDQ-GNDCPAG--VPGELLLRGPNLSPGYWRRP 350 (488)
T ss_pred ecccccccccccCCCcc--------cccccCCccccCCCCc-EEEEECCC-CCCCcCC--CceEEEEECCccchhhcCCh
Confidence 99999986543221100 0011336789999999 89999965 8888887 78999999999999999999
Q ss_pred ccchhcc-cCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeecCCCCCcceEEE
Q 008389 421 KANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFV 499 (567)
Q Consensus 421 ~~~~~~~-~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v 499 (567)
+.+...| .+|||+|||+|+++++|.+++.||.+|+|+.+|.+++|.+||++|.+++.|.+++|++.+++..|+..++++
T Consensus 351 ~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v 430 (488)
T PRK09088 351 QATARAFTGDGWFRTGDIARRDADGFFWVVDRKKDMFISGGENVYPAEIEAVLADHPGIRECAVVGMADAQWGEVGYLAI 430 (488)
T ss_pred hhhhhhhcCCCCeeecceEEEcCCCcEEEeccccceEEeCCEEECHHHHHHHHHhCCCcceEEEEeCCCccCCceeEEEE
Confidence 8888777 489999999999999999999999999999999999999999999999999999999999887788888998
Q ss_pred EEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHHHHc
Q 008389 500 TLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKEM 559 (567)
Q Consensus 500 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~ 559 (567)
++.++. ..+. .++.++++++++.+++|..+.+++ ||+|++||++|++|++++.+.
T Consensus 431 ~~~~~~-~~~~----~~l~~~~~~~l~~~~~p~~i~~~~~iP~t~~gKi~r~~l~~~~~~~ 486 (488)
T PRK09088 431 VPADGA-PLDL----ERIRSHLSTRLAKYKVPKHLRLVDALPRTASGKLQKARLRDALAAG 486 (488)
T ss_pred EECCCC-CCCH----HHHHHHHHhhCcCCCCCCEEEEcccCCCCCCCceeHHHHHHHHHhc
Confidence 887654 3333 678999999999999999999888 999999999999999998765
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-65 Score=593.48 Aligned_cols=518 Identities=22% Similarity=0.232 Sum_probs=405.8
Q ss_pred cCHHHHHhhhhhcCCCceeEEE---------CCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhh
Q 008389 20 LTPLWFLDRAATVHPTRTSVVH---------GSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGV 90 (567)
Q Consensus 20 ~t~~~~l~~~a~~~p~~~a~~~---------~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~ 90 (567)
.++.++|+++++++|+++|+++ .++++||+||++++.++|+.|.+.|+++||+|+++++|++++++++|||
T Consensus 236 ~~l~~~~~~~a~~~pd~~A~~~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~~~~~i~~~lA~ 315 (1389)
T TIGR03443 236 GAIHDIFADNAEKHPDRTCVVETPSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGVDLVVAVMGV 315 (1389)
T ss_pred CcHHHHHHHHHHhCCCCeEEEeccccccccCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHHHHHH
Confidence 5799999999999999999986 3578999999999999999999999999999999999999999999999
Q ss_pred hhcCCeeeeccccCChHHHHHHHhccCceEEEEcccch---HHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhc
Q 008389 91 PMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYF---KLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYA 167 (567)
Q Consensus 91 ~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 167 (567)
+++|++++|++|.++.+++.++++.+++++++++.... ..+......... .......+ .+........
T Consensus 316 l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~----- 386 (1389)
T TIGR03443 316 LKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKELE---LRTEIPAL-ALQDDGSLVG----- 386 (1389)
T ss_pred HhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccccchhhhhhhhcccc---cccccceE-Eecccccccc-----
Confidence 99999999999999999999999999999999876531 111111110000 00011111 1111100000
Q ss_pred cCCChHHHHHHHhcCC--CCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCc
Q 008389 168 LGRGAVEYEKFLQTGD--PQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPM 245 (567)
Q Consensus 168 ~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~ 245 (567)
........+.+.... ..........++++++++|||||||.||||+++|+++.+.+.+....+++.++|+++...|+
T Consensus 387 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~~~ 465 (1389)
T TIGR03443 387 -GSLEGGETDVLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRFGLSENDKFTMLSGI 465 (1389)
T ss_pred -cccccccccccccccccccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEecCc
Confidence 000000001110000 00111122456899999999999999999999999999998888888999999999999999
Q ss_pred cchhhhHHHHHHhhhcCeeEEecc---CCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCC
Q 008389 246 FHCNGWCYTWSLAALCGTSICLRQ---VTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAP 322 (567)
Q Consensus 246 ~~~~g~~~~~~~~~~g~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l 322 (567)
+|..++...+.+++.|+++++... .++..+++.|+++++|++.++|++++.|..... .. ++++|.+++||+++
T Consensus 466 ~~d~~~~~i~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~---~~-~~~lr~~~~gGe~l 541 (1389)
T TIGR03443 466 AHDPIQRDMFTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQAT---TP-IPSLHHAFFVGDIL 541 (1389)
T ss_pred eecchHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhccc---cc-CCCccEEEEecccC
Confidence 999888888888889999887653 368899999999999999999999999875432 12 78999999999999
Q ss_pred CHHHHHHHHhc--CCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCC-CCccCCCC
Q 008389 323 PPSVLHAMSQK--GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRT-QQPVPADG 399 (567)
Q Consensus 323 ~~~~~~~~~~~--~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~-~~~~~~~~ 399 (567)
++...+.+.+. ++++++.||+||++..++......................+|.|++++ .+.|+|++. +++++.|
T Consensus 542 ~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~-~~~ivd~~~~~~~~~~G- 619 (1389)
T TIGR03443 542 TKRDCLRLQTLAENVCIVNMYGTTETQRAVSYFEIPSRSSDSTFLKNLKDVMPAGKGMKNV-QLLVVNRNDRTQTCGVG- 619 (1389)
T ss_pred CHHHHHHHHHhCCCCEEEECccCCccceeEEEEEccccccccchhhcccCcCcCCCccCCC-EEEEECCccCCCcCCCC-
Confidence 99999888865 789999999999976655432211100000000011235689999999 899999753 5778888
Q ss_pred CceEEEEEecccccccccCCCccchhccc-----------------------------CCccccCceEEEeCCCcEEEec
Q 008389 400 KTIGEIVMSGNVVMKGYLKNPKANEETFA-----------------------------NGWYHTGDLGVKHPDNYIEIKD 450 (567)
Q Consensus 400 ~~~Gei~v~~~~~~~gy~~~~~~~~~~~~-----------------------------~g~~~TGDl~~~~~~g~l~~~G 450 (567)
+.|||+|+|+.++.||+++++.+.+.|. ++||+|||+|++++||.++++|
T Consensus 620 -~~GEL~i~G~~v~~GY~~~p~~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~TGDlg~~~~dG~l~~~G 698 (1389)
T TIGR03443 620 -EVGEIYVRAGGLAEGYLGLPELNAEKFVNNWFVDPSHWIDLDKENNKPEREFWLGPRDRLYRTGDLGRYLPDGNVECCG 698 (1389)
T ss_pred -CceEEEecccccchhcCCChhHhhhhccCCcccCcccccccccccccccccccCCCccceeecCCceeEcCCCCEEEec
Confidence 8899999999999999999999988872 5799999999999999999999
Q ss_pred cccceeeeCceecchHHHHHHHhcCCCceeeEEEEeecCCCCCcceEEEEEcCCccchh---------------------
Q 008389 451 RSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSN--------------------- 509 (567)
Q Consensus 451 R~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~--------------------- 509 (567)
|.||+||++|++|+|.|||.+|.++|.|.+++|++.+++..+..+++++++..+.....
T Consensus 699 R~dd~Iki~G~rI~p~eIE~~l~~~p~V~~a~v~~~~~~~~~~~lva~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 778 (1389)
T TIGR03443 699 RADDQVKIRGFRIELGEIDTHLSQHPLVRENVTLVRRDKDEEPTLVSYIVPQDKSDELEEFKSEVDDEESSDPVVKGLIK 778 (1389)
T ss_pred ccCCEEEeCcEEecHHHHHHHHHhCcchheeEEEEeeCCCCCeEEEEEEeccCccccccccccccccccccccchhhhhh
Confidence 99999999999999999999999999999999998888777788999998763211100
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHH
Q 008389 510 EQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRA 554 (567)
Q Consensus 510 ~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~ 554 (567)
......+++++++++||.|++|..+++++ ||+|++||++|++|++
T Consensus 779 ~~~~~~~l~~~l~~~Lp~y~~P~~~~~~~~lP~t~~GKidr~~L~~ 824 (1389)
T TIGR03443 779 YRKLIKDIREYLKKKLPSYAIPTVIVPLKKLPLNPNGKVDKPALPF 824 (1389)
T ss_pred hhhhHHHHHHHHHhhCCcccCCceEEEcccCCCCCCccccHhhcCC
Confidence 11234688999999999999999999888 9999999999999964
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PRK06710 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-64 Score=533.90 Aligned_cols=514 Identities=27% Similarity=0.378 Sum_probs=413.3
Q ss_pred cCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCeeee
Q 008389 20 LTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNA 99 (567)
Q Consensus 20 ~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~ 99 (567)
+++.++|.+.+.++|+++|+++.++.+||+||++++.++|+.|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus 24 ~~~~~~~~~~a~~~p~~~a~~~~~~~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vp 103 (563)
T PRK06710 24 QPLHKYVEQMASRYPEKKALHFLGKDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQ 103 (563)
T ss_pred ccHHHHHHHHHHHCCCceEEEecCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHcCeEEec
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCC--Cccc--------------
Q 008389 100 VNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESC--DPKD-------------- 163 (567)
Q Consensus 100 i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~-------------- 163 (567)
++|.++.+++.++++.++++++++++.....+....... ....++....... ....
T Consensus 104 i~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (563)
T PRK06710 104 TNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSAT--------KIEHVIVTRIADFLPFPKNLLYPFVQKKQSNLV 175 (563)
T ss_pred cCcccCHHHHHHHHhccCCeEEEEeccchhhhhccchhh--------ccceeEEeccccccccccccccchhhccccccc
Confidence 999999999999999999999999887655443321111 1122221110000 0000
Q ss_pred chhccCCChHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHH-hccC-CCcEEEE
Q 008389 164 LKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALI-WGMN-EGAVYLW 241 (567)
Q Consensus 164 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~-~~~~-~~d~~~~ 241 (567)
...........++.+........ .......+++++++|||||||.||+|.++|+++..+....... ++.. .++++++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~ 254 (563)
T PRK06710 176 VKVSESETIHLWNSVEKEVNTGV-EVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCKEGEEVVLG 254 (563)
T ss_pred ccccccchhhhhhhhhhcccccc-ccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhccCCCCCCceEEE
Confidence 00000000011222211111110 1111235789999999999999999999999987654433332 3443 3457889
Q ss_pred ecCccchhhhHHHH-HHhhhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCC
Q 008389 242 TLPMFHCNGWCYTW-SLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGA 320 (567)
Q Consensus 242 ~~p~~~~~g~~~~~-~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~ 320 (567)
.+|++|.+|+...+ ..+..|++++..+.+++..+++.|+++++|++.++|+++..+++........ ++++|.+++||+
T Consensus 255 ~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~v~~gg~ 333 (563)
T PRK06710 255 VLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLKEYD-ISSIRACISGSA 333 (563)
T ss_pred eCchHHHHHHHHHHHHHHHcCCeEEEcCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCccccCC-hhhhhheeeCCC
Confidence 99999999886544 4556677777777789999999999999999999999999998865544444 789999999999
Q ss_pred CCCHHHHHHHHh-cCCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCC
Q 008389 321 APPPSVLHAMSQ-KGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADG 399 (567)
Q Consensus 321 ~l~~~~~~~~~~-~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~ 399 (567)
++++++.+++.+ +++++++.||+||++.+....... .....+.+|.|.+++ .++++|++++.+++.|
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~----------~~~~~~~~G~~~~~~-~~~i~~~~~~~~~~~g- 401 (563)
T PRK06710 334 PLPVEVQEKFETVTGGKLVEGYGLTESSPVTHSNFLW----------EKRVPGSIGVPWPDT-EAMIMSLETGEALPPG- 401 (563)
T ss_pred cCCHHHHHHHHHhhCCCEecccccccCccccccCccc----------ccccCCccCCCCCCC-eEEEEECCCCccCCCC-
Confidence 999999999885 488999999999997654332110 011235789999999 7999998889999988
Q ss_pred CceEEEEEecccccccccCCCccchhcccCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCce
Q 008389 400 KTIGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVL 479 (567)
Q Consensus 400 ~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~ 479 (567)
+.|||+++|+.++.||+++++.+...|.+|||+|||+++++++|.+++.||.+|+|+++|.+|+|.+||+.+.+++.|.
T Consensus 402 -~~Gel~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~p~eiE~~l~~~~~v~ 480 (563)
T PRK06710 402 -EIGEIVVKGPQIMKGYWNKPEETAAVLQDGWLHTGDVGYMDEDGFFYVKDRKKDMIVASGFNVYPREVEEVLYEHEKVQ 480 (563)
T ss_pred -CceEEEEecCccchhhhCChHHHhhhcccCcccccceEEEcCCCcEEEeeccccEEEECCEEECHHHHHHHHHhCccee
Confidence 7899999999999999999999988899999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHHHH
Q 008389 480 EASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKE 558 (567)
Q Consensus 480 ~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~ 558 (567)
+++|++.++...|+.++++++..++. ..+. ++++++++++++.++.|..+.+++ +|+|++||++|+.|++++..
T Consensus 481 ~~~v~~~~~~~~g~~~~~~v~~~~~~-~~~~----~~l~~~~~~~l~~~~~P~~~~~v~~iP~t~~GKi~r~~L~~~~~~ 555 (563)
T PRK06710 481 EVVTIGVPDPYRGETVKAFVVLKEGT-ECSE----EELNQFARKYLAAYKVPKVYEFRDELPKTTVGKILRRVLIEEEKR 555 (563)
T ss_pred eEEEEccccCCcCceeEEEEEECCCC-CCCH----HHHHHHHHHhcccccCCcEEEEcccCCCCccchhhHHHHHHHHhh
Confidence 99999999988889999999988765 3344 678889999999999999999888 99999999999999999877
Q ss_pred cCC
Q 008389 559 MGP 561 (567)
Q Consensus 559 ~~~ 561 (567)
...
T Consensus 556 ~~~ 558 (563)
T PRK06710 556 KNE 558 (563)
T ss_pred cCc
Confidence 643
|
|
| >PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-65 Score=551.06 Aligned_cols=495 Identities=17% Similarity=0.223 Sum_probs=391.7
Q ss_pred cccCHHHHHhhhhhcCCC-ceeEEECC-ccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCC
Q 008389 18 MALTPLWFLDRAATVHPT-RTSVVHGS-TRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGA 95 (567)
Q Consensus 18 ~~~t~~~~l~~~a~~~p~-~~a~~~~~-~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~ 95 (567)
+..|+.++|++.++++|+ ++|+.+.+ +++||+||.++++++|+.|.+. +++||+|+++++|++++++++|||+++|+
T Consensus 202 ~~~t~~~~l~~~~~~~p~~~~a~~~~~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~Val~~~n~~e~~~~~lA~~~~G~ 280 (718)
T PRK08043 202 PRETLYEALLSAQYRYGAGKPCIEDVNFTPDSYRKLLKKTLFVGRILEKY-SVEGERIGLMLPNATISAAVIFGASLRRR 280 (718)
T ss_pred CCCCHHHHHHHHHHHhCCCCcceEcCCCCcccHHHHHHHHHHHHHHHHHh-cCCCceEEEEcCCcHHHHHHHHHHHHcCC
Confidence 568999999999999998 68887643 7899999999999999999887 69999999999999999999999999999
Q ss_pred eeeeccccCChHHHHHHHhccCceEEEEcccchHHHH--HHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChH
Q 008389 96 VLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAE--EALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAV 173 (567)
Q Consensus 96 ~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 173 (567)
+++|+++.++.+++.++++.++++++|++.+..+... .....+ .....+.+.+... .. . ......
T Consensus 281 v~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~--------~~~~~i~~~~~~~-~~--~--~~~~~~ 347 (718)
T PRK08043 281 IPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQL--------TQVRWVYLEDLKD-DV--T--TADKLW 347 (718)
T ss_pred cccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCChhhhh--------ccccEEEhhhhhh-hc--c--hhHHHH
Confidence 9999999999999999999999999999877543211 000000 1112222221100 00 0 000000
Q ss_pred HHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhhHH
Q 008389 174 EYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCY 253 (567)
Q Consensus 174 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~ 253 (567)
...+.. .+. ....+..++++++++|||||||.||+|.+||+++.+........++++++|++++.+|++|.+|+..
T Consensus 348 ~~~~~~---~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~g~~~ 423 (718)
T PRK08043 348 IFAHLL---MPR-LAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPNDRFMSALPLFHSFGLTV 423 (718)
T ss_pred HHHHHh---CCc-cccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhhCCCccCeEEEcCcchhhhhhHH
Confidence 000100 010 1112345689999999999999999999999999988888777888999999999999999999865
Q ss_pred H-HHHhhhcCeeEEecc-CCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHHH
Q 008389 254 T-WSLAALCGTSICLRQ-VTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMS 331 (567)
Q Consensus 254 ~-~~~~~~g~~~~~~~~-~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~ 331 (567)
. +..+..|+++++.+. +++..+++.++++++|++.++|+++..+.+... ..+ ++++|.+++||+++++++.+.+.
T Consensus 424 ~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~--~~~-~~~lr~i~~gg~~l~~~~~~~~~ 500 (718)
T PRK08043 424 GLFTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFAN--PYD-FARLRYVVAGAEKLQESTKQLWQ 500 (718)
T ss_pred HHHHHHHcCCEEEEeCCcccHHHHHHHHHhcCCeEEEchHHHHHHhhhhcC--ccc-ccceEEEEEeCccCCHHHHHHHH
Confidence 4 455566777776653 567888999999999999999999988866422 223 78999999999999999999988
Q ss_pred h-cCCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEecc
Q 008389 332 Q-KGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGN 410 (567)
Q Consensus 332 ~-~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~ 410 (567)
+ +++++++.||+||+++.++..... ....+++|.|+|++ +++|+|.+ +. + +.|||+++|+
T Consensus 501 ~~~g~~l~~~YG~TE~~~~~~~~~~~-----------~~~~~svG~p~pg~-~~~i~d~~-~~----~--~~Gel~v~g~ 561 (718)
T PRK08043 501 DKFGLRILEGYGVTECAPVVSINVPM-----------AAKPGTVGRILPGM-DARLLSVP-GI----E--QGGRLQLKGP 561 (718)
T ss_pred HHcCCCeecccCcccccceEEecCCc-----------ccCCCCCCCcCCCC-eeEEecCC-CC----C--CceEEEEecC
Confidence 4 599999999999997665432110 12347899999999 89999865 32 2 4599999999
Q ss_pred cccccccCC--Ccc-------chh-cccCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCcee
Q 008389 411 VVMKGYLKN--PKA-------NEE-TFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLE 480 (567)
Q Consensus 411 ~~~~gy~~~--~~~-------~~~-~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~ 480 (567)
+++.||+++ ++. +.. .+.+|||+|||+|++|+||++++.||.+|+|+++|++|+|.+||+++.+++.+.+
T Consensus 562 ~v~~GY~~~e~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~~d~I~~~G~~V~p~eIE~~l~~~~~~~~ 641 (718)
T PRK08043 562 NIMNGYLRVEKPGVLEVPTAENARGEMERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSLEMVEQLALGVSPDKQ 641 (718)
T ss_pred CccccccCCCCcccccccccccccccccCCeEecCCEEEEcCCCcEEEEecCCCeeEeCcEEcCHHHHHHHHHhCCccce
Confidence 999999983 332 111 2357999999999999999999999999999999999999999999999998888
Q ss_pred eEEEEeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhc-CCCCCCCceeecCc-ccCCCCccccHHHHHHHHHH
Q 008389 481 ASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAK-MPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKE 558 (567)
Q Consensus 481 ~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~-l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~ 558 (567)
++|++.++...|+.++++++ +. ..+. ++++++++++ |+.|++|..+.+++ +|+|++||++|++|++++.+
T Consensus 642 ~avv~~~~~~~ge~~v~~~~---~~-~~~~----~~l~~~~~~~~l~~~~vP~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 713 (718)
T PRK08043 642 HATAIKSDASKGEALVLFTT---DS-ELTR----EKLQQYAREHGVPELAVPRDIRYLKQLPLLGSGKPDFVTLKSMVDE 713 (718)
T ss_pred EEEEEccCCCCCceEEEEEc---Cc-ccCH----HHHHHHHHhcCCCcccCCceEEEecccCcCCCCCcCHHHHHHHHhc
Confidence 88899888888888887764 21 2333 5788899887 99999999999988 99999999999999999877
Q ss_pred cC
Q 008389 559 MG 560 (567)
Q Consensus 559 ~~ 560 (567)
..
T Consensus 714 ~~ 715 (718)
T PRK08043 714 PE 715 (718)
T ss_pred cc
Confidence 53
|
|
| >PRK06178 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-64 Score=533.37 Aligned_cols=518 Identities=26% Similarity=0.339 Sum_probs=413.8
Q ss_pred ccCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCeee
Q 008389 19 ALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLN 98 (567)
Q Consensus 19 ~~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v 98 (567)
..++.++|+++++.+|+++|+.+.++++||.||++++.++|..|.+.|+++|++|+++++|+++++++++||+++|++++
T Consensus 32 ~~~l~~~l~~~a~~~p~~~al~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 111 (567)
T PRK06178 32 ERPLTEYLRAWARERPQRPAIIFYGHVITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHV 111 (567)
T ss_pred cccHHHHHHHHHHHCCCceEEEECCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCcHHHHHHHHHHHhCeEEe
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccc--hh--------cc
Q 008389 99 AVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDL--KY--------AL 168 (567)
Q Consensus 99 ~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~--------~~ 168 (567)
|++|..+.+++.++++.++++++++++...+.+.+..... ....++............ .. ..
T Consensus 112 ~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l~~~~~~~--------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (567)
T PRK06178 112 PVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAET--------SLRHVIVTSLADVLPAEPTLPLPDSLRAPRLA 183 (567)
T ss_pred ecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHhhccC--------CcceEEEecccccccccccccccccccccccc
Confidence 9999999999999999999999999988776655443211 122333322111000000 00 00
Q ss_pred CCChHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHH-HhccCCCcEEEEecCccc
Q 008389 169 GRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVAL-IWGMNEGAVYLWTLPMFH 247 (567)
Q Consensus 169 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~-~~~~~~~d~~~~~~p~~~ 247 (567)
......+.+..... +......+...+++++++|||||||.||+|.+||.++......... ...++.+|+++..+|++|
T Consensus 184 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~ 262 (567)
T PRK06178 184 AAGAIDLLPALRAC-TAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVGGEDSVFLSFLPEFW 262 (567)
T ss_pred ccccccHHHHhhcc-ccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHhccCCCCcEEEEecchHH
Confidence 01111111111111 1111122345789999999999999999999999998876655443 356788999999999999
Q ss_pred hhhhHH-HHHHhhhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhh--ccCCCCCH
Q 008389 248 CNGWCY-TWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVN--TAGAAPPP 324 (567)
Q Consensus 248 ~~g~~~-~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~--~~G~~l~~ 324 (567)
++|+.. .+..+..|+++++..++++..++..++++++|.+.++|..+..+.......... +++++.+. ..++.+++
T Consensus 263 ~~g~~~~~~~~l~~G~~~~l~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~~~~~~-l~~l~~~~~~~~~~~~~~ 341 (567)
T PRK06178 263 IAGENFGLLFPLFSGATLVLLARWDAVAFMAAVERYRVTRTVMLVDNAVELMDHPRFAEYD-LSSLRQVRVVSFVKKLNP 341 (567)
T ss_pred HHHHHHHHHHHHHcCceEEEeCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCCCCCC-cchheeeeeccccccCCH
Confidence 999864 455567788888888889999999999999999999999999988765433333 66777653 34589999
Q ss_pred HHHHHHHhc-CCeeee-ccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCce
Q 008389 325 SVLHAMSQK-GFHVTH-TYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTI 402 (567)
Q Consensus 325 ~~~~~~~~~-~~~i~~-~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~ 402 (567)
+..+.+++. +..++. .||+||+++.+.......... .........+|.|+|++ .++|+|++++.+++.+ +.
T Consensus 342 ~~~~~~~~~~g~~~~~~~YG~tE~~~~~~~~~~~~~~~----~~~~~~~~~vG~p~~g~-~v~v~d~~~~~~~~~g--~~ 414 (567)
T PRK06178 342 DYRQRWRALTGSVLAEAAWGMTETHTCDTFTAGFQDDD----FDLLSQPVFVGLPVPGT-EFKICDFETGELLPLG--AE 414 (567)
T ss_pred HHHHHHHHHhCCcccccccccccccccceeccccccCc----cccccCCcccccccCCc-EEEEEcCCCCCcCCCC--Cc
Confidence 999998854 666664 799999876554432111000 00012345689999999 8999997779999988 78
Q ss_pred EEEEEecccccccccCCCccchhcccCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeE
Q 008389 403 GEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEAS 482 (567)
Q Consensus 403 Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~ 482 (567)
|||+++|++++.||+++++.+...|.+|||+|||+|+++++|++++.||.+|+|+.+|.+++|.+||+++.++++|.+++
T Consensus 415 Gel~v~g~~v~~gY~~~~~~~~~~~~dg~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~eiE~~l~~~~~v~~~~ 494 (567)
T PRK06178 415 GEIVVRTPSLLKGYWNKPEATAEALRDGWLHTGDIGKIDEQGFLHYLGRRKEMLKVNGMSVFPSEVEALLGQHPAVLGSA 494 (567)
T ss_pred eEEEEECCcccccccCChhhhhhcccCCceeecceEEEecCCeEEEEecccccEEECCEEECHHHHHHHHHhCCCeeEEE
Confidence 99999999999999999999988899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHHHHc
Q 008389 483 VVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKEM 559 (567)
Q Consensus 483 v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~ 559 (567)
+++.++...|+.+++++++.++. ..+. ++++++++++++.+++|. +.+++ +|+|++||++|++|++++.+.
T Consensus 495 v~~~~~~~~g~~~~~~v~~~~~~-~~~~----~~l~~~~~~~l~~~~~p~-i~~v~~iP~t~~GKv~r~~l~~~~~~~ 566 (567)
T PRK06178 495 VVGRPDPDKGQVPVAFVQLKPGA-DLTA----AALQAWCRENMAVYKVPE-IRIVDALPMTATGKVRKQDLQALAEEL 566 (567)
T ss_pred EEcCcCcccCcceEEEEEeCCCC-cCCH----HHHHHHHHhcCcccCCce-EEEeccCCCCCccceeHHHHHHHHHhh
Confidence 99998888788999999887654 3344 678899999999999997 66666 999999999999999998764
|
|
| >PRK08279 long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-64 Score=538.43 Aligned_cols=507 Identities=22% Similarity=0.274 Sum_probs=396.6
Q ss_pred hhcccCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCC
Q 008389 16 NYMALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGA 95 (567)
Q Consensus 16 ~~~~~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~ 95 (567)
+.++.|+.++|.+.++++|+++|+++.++++||+||++++.++|..|.+.|+++||+|+++++|+.++++++|||+++|+
T Consensus 33 ~~~~~tl~~~l~~~a~~~p~~~Ai~~~~~~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~v~~~lA~~~~G~ 112 (600)
T PRK08279 33 PDSKRSLGDVFEEAAARHPDRPALLFEDQSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLAKLGA 112 (600)
T ss_pred CCCcccHHHHHHHHHHhCCCCcEEEeCCCcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCc
Confidence 35568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHH
Q 008389 96 VLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEY 175 (567)
Q Consensus 96 ~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 175 (567)
+++++++.++.+++.++++.++++++|++.+..+.+.+...... . ...+.+.+..... .......+
T Consensus 113 ~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~~~~~------~~~~~~~~ 178 (600)
T PRK08279 113 VVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADLA-------R-PPRLWVAGGDTLD------DPEGYEDL 178 (600)
T ss_pred EEeecCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHhhhhc-------c-cceEEEecCcccc------ccccHHHH
Confidence 99999999999999999999999999999887666655433222 1 2222222211000 01112222
Q ss_pred HHHHhcCCCC-CCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhhHHH
Q 008389 176 EKFLQTGDPQ-FDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYT 254 (567)
Q Consensus 176 ~~~l~~~~~~-~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~ 254 (567)
.+........ .........+++++++|||||||.||+|.+||+++.+++......++++++|++++.+|++|.+|+...
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~l~~~d~~l~~~pl~h~~g~~~~ 258 (600)
T PRK08279 179 AAAAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTPDDVLYCCLPLYHNTGGTVA 258 (600)
T ss_pred hhhcccCCccCCCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhcCCCCCcEEEEecCchhhhhHHHH
Confidence 2222211111 111123456899999999999999999999999999999888888999999999999999999999877
Q ss_pred HHHhhhcCeeE-EeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHHHhc
Q 008389 255 WSLAALCGTSI-CLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQK 333 (567)
Q Consensus 255 ~~~~~~g~~~~-~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~ 333 (567)
+...+.+|+.+ +...+++..+++.++++++|++..+|++++.++......... ..++|. ++|+.+++++.+.+.+.
T Consensus 259 ~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~~~~-~~~l~~--~~g~~l~~~~~~~~~~~ 335 (600)
T PRK08279 259 WSSVLAAGATLALRRKFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKPTDR-DHRLRL--MIGNGLRPDIWDEFQQR 335 (600)
T ss_pred HHHHHhcCcEEEEcCCCCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCCcccc-CcceeE--EecCCCCHHHHHHHHHH
Confidence 77666555444 456789999999999999999999999999998765433322 456664 45788999999998854
Q ss_pred -CC-eeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceec----ccccee---------EeeCCCCC--ccC
Q 008389 334 -GF-HVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFI----GLEKLD---------VIDTRTQQ--PVP 396 (567)
Q Consensus 334 -~~-~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~----~~~~~~---------i~d~~~~~--~~~ 396 (567)
+. .+++.||+||++....... ....++|.+.+ +. .+. +.+.+ +. .++
T Consensus 336 ~~~~~l~~~YG~tE~~~~~~~~~--------------~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~i~~~~-~~~~~~~ 399 (600)
T PRK08279 336 FGIPRILEFYAASEGNVGFINVF--------------NFDGTVGRVPLWLAHPY-AIVKYDVDTGEPVRDAD-GRCIKVK 399 (600)
T ss_pred hCcceeeeeecccccceeecccC--------------CCCcccccccccccccc-eeeeeccCcCceeeCCC-CccccCC
Confidence 54 6999999999864322110 01133444333 22 122 22222 22 345
Q ss_pred CCCCceEEEE--EecccccccccCCCccchhcc-------cCCccccCceEEEeCCCcEEEeccccceeeeCceecchHH
Q 008389 397 ADGKTIGEIV--MSGNVVMKGYLKNPKANEETF-------ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVE 467 (567)
Q Consensus 397 ~~~~~~Gei~--v~~~~~~~gy~~~~~~~~~~~-------~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~ 467 (567)
.+ +.||++ +.++.++.|| +++..+...| .++||+|||+|++++||.+++.||.+|+||++|++|+|.+
T Consensus 400 ~g--~~Gel~~~i~~~~~~~GY-~~~~~t~~~~~~~~~~~~~~~~~TGDlg~~~~dG~l~~~GR~~d~ik~~G~~i~p~e 476 (600)
T PRK08279 400 PG--EVGLLIGRITDRGPFDGY-TDPEASEKKILRDVFKKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRWKGENVATTE 476 (600)
T ss_pred CC--CceeEEEEecCccccccc-CCchhhHHHHhhcccCCCCceEeecceEEEcCCccEEEecccCCeEEECCcccCHHH
Confidence 55 789998 6789999999 8887776655 2579999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCceeeEEEEeecCCC-CCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCc
Q 008389 468 VENMMYLHPAVLEASVVARADERW-GESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATG 545 (567)
Q Consensus 468 iE~~l~~~~~i~~~~v~~~~~~~~-g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~G 545 (567)
||+.+.++|+|.+++|++++.+.. +...+++++..++. ..+. ++++++++++|+.|++|..+++++ +|+|++|
T Consensus 477 IE~~l~~~p~V~~a~v~gv~~~~~~~~~~~~~vv~~~~~-~~~~----~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~G 551 (600)
T PRK08279 477 VENALSGFPGVEEAVVYGVEVPGTDGRAGMAAIVLADGA-EFDL----AALAAHLYERLPAYAVPLFVRLVPELETTGTF 551 (600)
T ss_pred HHHHHhcCCCcceEEEEEeecCCCCCccceeEEEecCCc-cCCH----HHHHHHHHhhCccccCCeEEEeecCCCCCcch
Confidence 999999999999999999986653 44566666666533 3344 688999999999999999999888 9999999
Q ss_pred cccHHHHHHHHHHcCCcc
Q 008389 546 KIQKHVLRAKAKEMGPVR 563 (567)
Q Consensus 546 Ki~r~~l~~~~~~~~~~~ 563 (567)
|++|+.|++++.+....+
T Consensus 552 Ki~r~~L~~~~~~~~~~~ 569 (600)
T PRK08279 552 KYRKVDLRKEGFDPSKVD 569 (600)
T ss_pred hhhHHHHhhcCCCccccC
Confidence 999999999988875443
|
|
| >TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-64 Score=528.99 Aligned_cols=490 Identities=22% Similarity=0.297 Sum_probs=409.1
Q ss_pred CHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCeeeec
Q 008389 21 TPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAV 100 (567)
Q Consensus 21 t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i 100 (567)
++.+.|.+.+..+|+++|+...++++||+||.+++.++|..|.+.|+++||+|+++++|+.++++++|||+++|++++|+
T Consensus 1 ~~~~~l~~~a~~~p~~~a~~~~~~~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~v~~ 80 (502)
T TIGR01734 1 KLIEAIQAFAETYPQTIAYRYQGQELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSGHAYIPV 80 (502)
T ss_pred CHHHHHHHHHHHCCCceEEEcCCcEEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCEEeCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHHHHHHh
Q 008389 101 NIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQ 180 (567)
Q Consensus 101 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 180 (567)
++.++.+++.++++..+++.++++.+...... . ..++.+.. .+....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~--------------~-~~~~~~~~------------------~~~~~~ 127 (502)
T TIGR01734 81 DTSIPSERIEMIIEAAGPELVIHTAELSIDAV--------------G-TQIITLSA------------------LEQAET 127 (502)
T ss_pred CCcChHHHHHHHHHhcCCCEEEeccccccccc--------------C-CceEEchH------------------hhhhhh
Confidence 99999999999999999999999876532211 0 11222111 111111
Q ss_pred cCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhhHHHHHHhhh
Q 008389 181 TGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAAL 260 (567)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~ 260 (567)
...+ .....+..+++.++++|||||||.||+|.++|+++..........+++..+++++...|++|..++...+.++..
T Consensus 128 ~~~~-~~~~~~~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~ 206 (502)
T TIGR01734 128 SGGP-VSFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADFPLSEGKQFLNQAPFSFDLSVMDLYPCLAS 206 (502)
T ss_pred hcCC-ccccccCCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhCCCCCCceEEeecCceechhHHHHHHHHHC
Confidence 1111 111223456889999999999999999999999999988888888889999999999999999999888888889
Q ss_pred cCeeEEecc---CCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHHHhc--CC
Q 008389 261 CGTSICLRQ---VTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQK--GF 335 (567)
Q Consensus 261 g~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~--~~ 335 (567)
|+++++.+. .++..+++.+++++++.+.++|++++.++......... +++++.++++|++++++..+++.+. ++
T Consensus 207 G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~~~~~~-~~~l~~~~~~G~~~~~~~~~~~~~~~~~~ 285 (502)
T TIGR01734 207 GGTLHCLDKDITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPNFNQEN-YPHLTHFLFCGEELPVKTAKALLERFPKA 285 (502)
T ss_pred CCEEEEcCHHHhcCHHHHHHHHHHcCCeEEEEChhHHHHHHhcccccccc-CCcccEEEEcCCcCCHHHHHHHHHHCCCc
Confidence 999988754 57899999999999999999999998877654333333 7899999999999999999998854 78
Q ss_pred eeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEeccccccc
Q 008389 336 HVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKG 415 (567)
Q Consensus 336 ~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~~g 415 (567)
++++.||+||+++.++......+. ........+|.+.+++ .++|+|++ +.+++.+ +.|||+++|+.++.|
T Consensus 286 ~~~~~yG~tE~~~~~~~~~~~~~~------~~~~~~~~vg~~~~~~-~~~i~~~~-~~~~~~g--~~Gel~v~g~~~~~g 355 (502)
T TIGR01734 286 TIYNTYGPTEATVAVTSVKITQEI------LDQYPRLPIGFAKPDM-NLFIMDEE-GEPLPEG--EKGEIVIVGPSVSKG 355 (502)
T ss_pred EEEeCccCCcceEEEEEEEccccc------cccCCccccccccCCC-EEEEECCC-CCCCCCC--CeeEEEEcccccccc
Confidence 999999999987654433221110 0111235689999999 89999987 8888887 889999999999999
Q ss_pred ccCCCccchhccc----CCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEee-cCC
Q 008389 416 YLKNPKANEETFA----NGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARA-DER 490 (567)
Q Consensus 416 y~~~~~~~~~~~~----~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~-~~~ 490 (567)
|+++++.+...|. .+||+|||+|+++++ ++++.||.+|+|+.+|++|+|.+||+.+.++|.|.++++++.. ...
T Consensus 356 y~~~~~~~~~~~~~~~~~~~~~TGDlg~~~~~-~l~i~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~ 434 (502)
T TIGR01734 356 YLNNPEKTAEAFFSHEGQPAYRTGDAGTITDG-QLFYQGRLDFQIKLHGYRIELEDIEFNLRQSSYIESAVVVPKYNKDH 434 (502)
T ss_pred ccCCcccchHhheeCCCcEEEECCCEEEEECC-EEEEeccccCeEEECcEEeCHHHHHHHHHcCCCccEEEEEEEEcCCC
Confidence 9999998877662 359999999999966 9999999999999999999999999999999999999999865 444
Q ss_pred CCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHHH
Q 008389 491 WGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAK 557 (567)
Q Consensus 491 ~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~ 557 (567)
.++.++++++..... ..+..++.+++++.++++++.+..|+.+++++ +|+|++||++|++|++++.
T Consensus 435 ~~~~~~~~v~~~~~~-~~~~~~~~~~i~~~~~~~l~~~~~P~~~~~v~~lP~t~~gKv~r~~l~~~~~ 501 (502)
T TIGR01734 435 KVEYLIAAIVPETED-FEKEFQLTKAIKKELKKSLPAYMIPRKFIYRDQLPLTANGKIDRKALAEEVN 501 (502)
T ss_pred CceEEEEEEEecccc-cccchhhHHHHHHHHhhhChhhcCCcEEEEccccCCCCCCcccHHHHHHhhc
Confidence 567888999877654 33334455789999999999999999999988 9999999999999999764
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides. |
| >PRK13383 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-64 Score=528.03 Aligned_cols=478 Identities=24% Similarity=0.335 Sum_probs=399.5
Q ss_pred cccCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCee
Q 008389 18 MALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVL 97 (567)
Q Consensus 18 ~~~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~ 97 (567)
.++++.+.|.+++..+|+++|+.+.++.+||+||.+++.++|+.|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus 33 ~~~~~~~~~~~~a~~~p~~~a~~~~~~~lTy~el~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~v~ 112 (516)
T PRK13383 33 GGTNPYTLLAVTAARWPGRTAIIDDDGALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVFAVGLLGADV 112 (516)
T ss_pred cCCcHHHHHHHHHHHCCCCcEEEeCCCcEeHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHhCeEE
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHHHH
Q 008389 98 NAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEK 177 (567)
Q Consensus 98 v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (567)
+|+++.++.+++.++++.++++.++++++..+.+... ...++.++.... ...
T Consensus 113 vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-------------~~~~~~~~~~~~--------------~~~- 164 (516)
T PRK13383 113 VPISTEFRSDALAAALRAHHISTVVADNEFAERIAGA-------------DDAVAVIDPATA--------------GAE- 164 (516)
T ss_pred EEcCccCCHHHHHHHHhcCCCCEEEEchhHHHHHHhh-------------hcceEEeccchh--------------hhh-
Confidence 9999999999999999999999999988765443321 112222221100 000
Q ss_pred HHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHH--HHHHHHHHHhccCCCcEEEEecCccchhhhHHHH
Q 008389 178 FLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAY--LMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTW 255 (567)
Q Consensus 178 ~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~--~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~ 255 (567)
... ..+...++.++++|||||||.||+|.++|.... .........+++..+|+++..+|++|.+|+...+
T Consensus 165 ----~~~----~~p~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~ 236 (516)
T PRK13383 165 ----ESG----GRPAVAAPGRIVLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRTRLRTGSRISVAMPMFHGLGLGMLM 236 (516)
T ss_pred ----cCC----CCCCCCCCCcEEEECCCCCCCCCeeeecchhhhhhhhHHhHHhhhccCCCCeEEEecCCcchhhHHHHH
Confidence 000 011223456789999999999999999997432 1122233456788999999999999999998888
Q ss_pred HHhhhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCC-cCCCCchhhhhccCCCCCHHHHHHHHh-c
Q 008389 256 SLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDT-ILPLPHVVHVNTAGAAPPPSVLHAMSQ-K 333 (567)
Q Consensus 256 ~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~-~~~l~~lr~i~~~G~~l~~~~~~~~~~-~ 333 (567)
.++..|++++....+++..+++.++++++|.+.++|+++..+.+...... ...++++|.+++||+++++++++++.+ +
T Consensus 237 ~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~ 316 (516)
T PRK13383 237 LTIALGGTVLTHRHFDAEAALAQASLHRADAFTAVPVVLARILELPPRVRARNPLPQLRVVMSSGDRLDPTLGQRFMDTY 316 (516)
T ss_pred HHHhcCCEEEECCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHhccccccccCCCCceEEEEECCCCCCHHHHHHHHHHc
Confidence 88888998888778899999999999999999999999999987543211 122788999999999999999999885 5
Q ss_pred CCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEeccccc
Q 008389 334 GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVM 413 (567)
Q Consensus 334 ~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~ 413 (567)
+.++++.||+||++..+..+... ......++|.|++++ .++|+|++ +++++.+ +.|||+++|+.++
T Consensus 317 g~~v~~~YG~tE~~~~~~~~~~~----------~~~~~~~~G~~~~~~-~~~i~d~~-~~~~~~g--~~Gel~v~g~~~~ 382 (516)
T PRK13383 317 GDILYNGYGSTEVGIGALATPAD----------LRDAPETVGKPVAGC-PVRILDRN-NRPVGPR--VTGRIFVGGELAG 382 (516)
T ss_pred Cchhhhcccccccccceeccccc----------cccCCCcccCCCCCc-EEEEECCC-CCCCCCC--CceEEEEecCccc
Confidence 88999999999997654432210 112246799999999 89999976 8888887 7899999999999
Q ss_pred ccccCCCccchhcccCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeecCCCCC
Q 008389 414 KGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGE 493 (567)
Q Consensus 414 ~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~ 493 (567)
.||++.+. ..+.+|||+|||+|+++++|++++.||.+|+|+.+|.+|+|.+||..|.+++.|.++++++.++...|+
T Consensus 383 ~~Y~~~~~---~~~~~g~~~TGDl~~~d~~G~l~i~GR~~~~i~~~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~g~ 459 (516)
T PRK13383 383 TRYTDGGG---KAVVDGMTSTGDMGYLDNAGRLFIVGREDDMIISGGENVYPRAVENALAAHPAVADNAVIGVPDERFGH 459 (516)
T ss_pred ccccCCch---hheecCceecceeEEEcCCccEEEeccccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeccccccCc
Confidence 99998754 335689999999999999999999999999999999999999999999999999999999999888889
Q ss_pred cceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHH
Q 008389 494 SPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLR 553 (567)
Q Consensus 494 ~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~ 553 (567)
.+.++|++.++. ..+. .+++++++++++.+..|..+.+++ ||+|++||++|+.|+
T Consensus 460 ~~~~~v~~~~~~-~~~~----~~l~~~~~~~l~~~~~p~~i~~v~~iP~t~~gKi~r~~L~ 515 (516)
T PRK13383 460 RLAAFVVLHPGS-GVDA----AQLRDYLKDRVSRFEQPRDINIVSSIPRNPTGKVLRKELP 515 (516)
T ss_pred eEEEEEEECCCC-CCCH----HHHHHHHHHhcccCCCCcEEEEeCCCCCCCCCcCcHHHhC
Confidence 999999987654 3344 678899999999999999999888 999999999999874
|
|
| >PRK08751 putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-64 Score=532.51 Aligned_cols=508 Identities=25% Similarity=0.327 Sum_probs=409.9
Q ss_pred ccCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHH-HccCCCCCEEEEEcCChHHHHHHHHhhhhcCCee
Q 008389 19 ALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALC-KRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVL 97 (567)
Q Consensus 19 ~~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~-~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~ 97 (567)
..++.++|.+++.++|+++|+++.++++||+||.+++.++|+.|. +.|+++||+|+++++|++++++++|||+++|+++
T Consensus 24 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~ 103 (560)
T PRK08751 24 FRTVAEVFATSVAKFADRPAYHSFGKTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLTV 103 (560)
T ss_pred CCcHHHHHHHHHHhCCCCceEEECCceeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHhCeEE
Confidence 358999999999999999999999999999999999999999997 6899999999999999999999999999999999
Q ss_pred eeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCC-C-c-------------c
Q 008389 98 NAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESC-D-P-------------K 162 (567)
Q Consensus 98 v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~-~-------------~ 162 (567)
+|++|.++.+++.++++.++++++++++.....+.+..... ....++....... . . .
T Consensus 104 v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (560)
T PRK08751 104 VNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADT--------PVKQVITTGLGDMLGFPKAALVNFVVKYVKK 175 (560)
T ss_pred eccCccCCHHHHHHHHHhcCCeEEEEcchhHHHHHHHhhCC--------CccEEEEechhhhcccccchhhhhhhhhhhc
Confidence 99999999999999999999999999887765544432211 1222322210000 0 0 0
Q ss_pred cchhccCCChHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhc----cCCC-c
Q 008389 163 DLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWG----MNEG-A 237 (567)
Q Consensus 163 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~----~~~~-d 237 (567)
............+.+.+...............+++++++|||||||.||+|.++|.++..........++ +..+ +
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~ 255 (560)
T PRK08751 176 LVPEYRINGAIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCE 255 (560)
T ss_pred cccccCCCccccHHHHHhccCCCCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhccccccCCCCc
Confidence 0000001122334444443322222223346689999999999999999999999999887776655543 3344 5
Q ss_pred EEEEecCccchhhhHHH-HHHhhhcCeeEEe-ccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhh
Q 008389 238 VYLWTLPMFHCNGWCYT-WSLAALCGTSICL-RQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHV 315 (567)
Q Consensus 238 ~~~~~~p~~~~~g~~~~-~~~~~~g~~~~~~-~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i 315 (567)
+++...|++|.+++... +.....|++.++. ...++..+++.++++++|++.++|.++..+.+........ ++++|.+
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~-l~~lr~v 334 (560)
T PRK08751 256 VVITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPGFDQID-FSSLKMT 334 (560)
T ss_pred eEEEecChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcCcCcCCcc-hhhheee
Confidence 67788999999998643 4445567776665 3568999999999999999999999999999876544444 7899999
Q ss_pred hccCCCCCHHHHHHHHhc-CCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCc
Q 008389 316 NTAGAAPPPSVLHAMSQK-GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQP 394 (567)
Q Consensus 316 ~~~G~~l~~~~~~~~~~~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~ 394 (567)
++||+++++.+.+.+.+. ++++++.||+||+++.++.+.... ....+.+|.|++++ .++++|++ +.+
T Consensus 335 ~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~----------~~~~~~vG~~~~~~-~v~i~d~~-~~~ 402 (560)
T PRK08751 335 LGGGMAVQRSVAERWKQVTGLTLVEAYGLTETSPAACINPLTL----------KEYNGSIGLPIPST-DACIKDDA-GTV 402 (560)
T ss_pred eeCCCCCCHHHHHHHHHHhCCeEEEeeccccCCCceecccccc----------cccCCCcCccCCCc-eEEEECCC-CCC
Confidence 999999999999998864 889999999999987655432211 11236789999999 89999965 888
Q ss_pred cCCCCCceEEEEEecccccccccCCCccchhcc-cCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHh
Q 008389 395 VPADGKTIGEIVMSGNVVMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMY 473 (567)
Q Consensus 395 ~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~ 473 (567)
++.+ +.|||+++|+.++.||+++++.+...| .+|||+|||+|+++++|.+++.||.+|+|+++|.+++|.+||+.+.
T Consensus 403 ~~~g--~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~i~GR~~d~i~~~G~~v~p~eiE~~l~ 480 (560)
T PRK08751 403 LAIG--EIGELCIKGPQVMKGYWKRPEETAKVMDADGWLHTGDIARMDEQGFVYIVDRKKDMILVSGFNVYPNEIEDVIA 480 (560)
T ss_pred CCCC--CceEEEEecCccchhhcCChhhhhhccccCCCccccceEEEcCCceEEEEeechhheeECCEEEcHHHHHHHHH
Confidence 8887 789999999999999999999888777 4799999999999999999999999999999999999999999999
Q ss_pred cCCCceeeEEEEeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHH
Q 008389 474 LHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVL 552 (567)
Q Consensus 474 ~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l 552 (567)
++++|.+++|++.++...|+.+.++++.... ..+. ++++++++++++.++.|..+.+++ ||+|++||++|++|
T Consensus 481 ~~~~v~~~~v~~~~~~~~ge~~~~~v~~~~~--~~~~----~~l~~~~~~~l~~~~~P~~v~~v~~lP~t~~gKv~r~~L 554 (560)
T PRK08751 481 MMPGVLEVAAVGVPDEKSGEIVKVVIVKKDP--ALTA----EDVKAHARANLTGYKQPRIIEFRKELPKTNVGKILRREL 554 (560)
T ss_pred hCcCeeeeEEEecCCCCCCceEEEEEEcCCC--CCCH----HHHHHHHHHhhhhccCCeEEEEhhhCCCCccccccHHHH
Confidence 9999999999999988778877777765432 3333 678889999999999999999888 99999999999999
Q ss_pred HHH
Q 008389 553 RAK 555 (567)
Q Consensus 553 ~~~ 555 (567)
++.
T Consensus 555 ~~~ 557 (560)
T PRK08751 555 RDA 557 (560)
T ss_pred HHh
Confidence 876
|
|
| >KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-65 Score=507.47 Aligned_cols=519 Identities=23% Similarity=0.251 Sum_probs=424.2
Q ss_pred cccCHHHHHhhhhhcCCCceeEEECC--------ccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHh
Q 008389 18 MALTPLWFLDRAATVHPTRTSVVHGS--------TRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFG 89 (567)
Q Consensus 18 ~~~t~~~~l~~~a~~~p~~~a~~~~~--------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA 89 (567)
..+|+++.|++.+..+++.+++.... +++||+|..+++.+++..|+++|+++++.|+|+..|++||+++.+|
T Consensus 73 ~~~T~~~~f~~~~~~~~~~p~LG~r~~~~~~~~~~~~tY~q~~e~~~~~~~~l~~lG~~~~~~VGIy~~N~pEWiis~~a 152 (691)
T KOG1256|consen 73 GPLTLYEGFRRSVEKSGNGPMLGTRVIVDGKGPYEWLTYKQVYERAENLGSGLRKLGVKEDSKVGIYAFNRPEWIISEMA 152 (691)
T ss_pred CcccHHHHhhcchhccCCCCceeEEecccCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCceEEEeccCChhhHHhHHH
Confidence 36899999999999999999998743 7899999999999999999999999999999999999999999999
Q ss_pred hhhcCCeeeeccccCChHHHHHHHhccCceEEEEc-ccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhcc
Q 008389 90 VPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVD-QEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYAL 168 (567)
Q Consensus 90 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 168 (567)
|...|+++|||..+++++.+.++++.+.+.++|++ ++....+.+..... ..+.++.+|.+++............
T Consensus 153 ~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~ll~~~~~~-----~~~~LK~iI~~~~~~~~~~~~~~~~ 227 (691)
T KOG1256|consen 153 CYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKLLEIKEND-----SLPSLKAIIQLDEPSDELKEKAENN 227 (691)
T ss_pred HHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHHHHHHhhcccc-----cCccceeEEEecCCchhhhhhhhcC
Confidence 99999999999999999999999999999999999 44545444433221 1126788888887755444444445
Q ss_pred CCChHHHHHHHhcCCCCCCCC-CCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHH---h---ccCCCcEEEE
Q 008389 169 GRGAVEYEKFLQTGDPQFDWK-PPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALI---W---GMNEGAVYLW 241 (567)
Q Consensus 169 ~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~---~---~~~~~d~~~~ 241 (567)
+....+|++++..+....... .+..++|.|.|.|||||||.||||.+||+|+.+........ . .....|++++
T Consensus 228 gv~v~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~~~~~~~~~~~~dv~lS 307 (691)
T KOG1256|consen 228 GVEVYSWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLSAAENAKATVGDDVYLS 307 (691)
T ss_pred CeEEEEHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhhhcccccccccCceEEE
Confidence 566899999999986554444 47889999999999999999999999999999865542221 1 1233699999
Q ss_pred ecCccchhhhHHHHHHhhhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCC----C-------------
Q 008389 242 TLPMFHCNGWCYTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSE----D------------- 304 (567)
Q Consensus 242 ~~p~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~----~------------- 304 (567)
.+|+.|++...........|+++.+.. .|+..+.+.|++.+||++.++|..|+++.+...+ .
T Consensus 308 yLPLAHi~er~~~~~~~~~G~~IgF~~-gD~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~~~~sgflkr~l~~~A~~ 386 (691)
T KOG1256|consen 308 YLPLAHIFERVVELYTFYIGAKIGFAR-GDILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQVQKSGFLKRKLFNFAMA 386 (691)
T ss_pred eCcHHHHHHHHHHHhHhhcccEEEEec-CChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 999999999998888888888877775 6888999999999999999999999887632100 0
Q ss_pred ------------C-cC--------------CCCchhhhhccCCCCCHHHHHHHHhc-CCeeeeccCCccCcCCcccccCC
Q 008389 305 ------------T-IL--------------PLPHVVHVNTAGAAPPPSVLHAMSQK-GFHVTHTYGLSETYGPSTVCAWK 356 (567)
Q Consensus 305 ------------~-~~--------------~l~~lr~i~~~G~~l~~~~~~~~~~~-~~~i~~~YG~tE~~~~~~~~~~~ 356 (567)
. .. -...+|.+++|++|+++++...++.. +|+++++||+||+.+.++.....
T Consensus 387 ~k~~~~~~~G~~~~~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~g~~v~eGYGlTEts~g~~~~~~~ 466 (691)
T KOG1256|consen 387 YKLEHRLMKGKSRSRDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAALGCRVLEGYGLTETSAGTTLTLPG 466 (691)
T ss_pred HHHHHHhhCCCCcccchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhcCceeeecccccccCCceEeccCC
Confidence 0 00 03467888999999999999999965 79999999999998555544322
Q ss_pred CCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEecccccccccCCCccchhcc-cCCccccC
Q 008389 357 PEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETF-ANGWYHTG 435 (567)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TG 435 (567)
+ ...+++|.|+|++ +++++|...-...+.+ ..|||+|+|++++.||+++|+.|.+.| .|||++||
T Consensus 467 d-----------~~lgsvG~p~p~~-~vKL~dvpe~ny~a~~--~~GEIcirG~~Vf~GYyK~p~~T~e~ideDGWLhTG 532 (691)
T KOG1256|consen 467 D-----------NVLGSVGPPVPGN-EVKLVDVPEMNYDADG--SKGEICVRGPNVFMGYYKDPEKTAEAIDEDGWLHTG 532 (691)
T ss_pred C-----------CCCCCcCCcccCc-eEEEechHHhCcCcCC--CcceEEEecchhceeccCChHHHhhhhccccccccc
Confidence 1 1458999999999 8999998767777777 469999999999999999999999999 79999999
Q ss_pred ceEEEeCCCcEEEeccccceee-eCceecchHHHHHHHhcCCCceeeEEEEeecCCCCCcceEEEEEcCCccchhh----
Q 008389 436 DLGVKHPDNYIEIKDRSKDIII-SGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNE---- 510 (567)
Q Consensus 436 Dl~~~~~~g~l~~~GR~~d~i~-~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~---- 510 (567)
|+|+++++|.+.+.||.+++|| ..|+.|.|..||++..+.+.|.+++|.+..... .++++|+++++......
T Consensus 533 DiG~~~p~G~l~IidRkK~ifklaqGEyVaPe~IEniy~~~~~V~qi~V~g~s~~~---~LvaiVvpd~e~~~~~a~~~~ 609 (691)
T KOG1256|consen 533 DIGEWDPNGTLKIIDRKKNIFKLAQGEYVAPEKIENIYKRSLPVQQIFVLGDSLRS---FLVAIVVPDPEVLKSWAAKDG 609 (691)
T ss_pred cceeECCCccEEEEecccceEEcCCCCccChHHHHHHHhcCCceEEEEEECCcchh---cEEEEEecChhhchhhHHHcc
Confidence 9999999999999999999999 899999999999999999999999998877543 49999999775422111
Q ss_pred ---------------HHHHHHHHHHHH-hcCCCCCCCceeecCccc-------CCCCccccHHHHHHHHHHc
Q 008389 511 ---------------QQLAEDIMKFCR-AKMPAYWVPKSIVFGPLP-------KTATGKIQKHVLRAKAKEM 559 (567)
Q Consensus 511 ---------------~~~~~~l~~~l~-~~l~~~~~p~~i~~~~lP-------~t~~GKi~r~~l~~~~~~~ 559 (567)
+....++.+.-+ +.+..+.....+.+.+.| .||+-|++|..|.+.|++.
T Consensus 610 ~~~~~eelc~n~~~k~~vl~el~~~~~~~~l~~fe~vk~v~l~~~~FsienglltPTlK~KR~~l~~~yk~~ 681 (691)
T KOG1256|consen 610 VKGTFEELCRNLDVKEAVLSELVKVGKENGLKGFEQVKKVHLLPDPFSIENGLLTPTLKIKRPQLLKYYKKQ 681 (691)
T ss_pred CchhHHHHhcChhhHHHHHHHHHHHHhhhhccChhhEeeEEEecccccccCCccchhhhhhhHHHHHHHHHH
Confidence 123334444433 347777777877765422 6889999999999999875
|
|
| >KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-65 Score=511.01 Aligned_cols=512 Identities=26% Similarity=0.342 Sum_probs=420.5
Q ss_pred HHHhhhhhc-CCCceeEEECC------ccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCe
Q 008389 24 WFLDRAATV-HPTRTSVVHGS------TRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAV 96 (567)
Q Consensus 24 ~~l~~~a~~-~p~~~a~~~~~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~ 96 (567)
.++++.... .++.+++++.+ ..+||.|+.+.+.++|+.|.+.|+++||+|++++|+.+++++++|||.++|++
T Consensus 68 n~~~~~~~~~~~~~~a~~~~~~~~~~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mPm~~e~~ia~lA~~r~Gai 147 (626)
T KOG1175|consen 68 NCLDRHIKEKGGDKVAIIFEGNEGGDTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIYMPMIPEAVIAMLACARIGAI 147 (626)
T ss_pred hhhhhhhhhcCCCCcEEEEEecCCCceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEeccCChHHHHHHHHHhhcCeE
Confidence 344444333 48899998853 44899999999999999999999999999999999999999999999999999
Q ss_pred eeeccccCChHHHHHHHhccCceEEEEcccchH---------HHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhc
Q 008389 97 LNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFK---------LAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYA 167 (567)
Q Consensus 97 ~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 167 (567)
.+++...+++.++...++.++++++++.+.... ...++...+.... + .....+.+...
T Consensus 148 ~~~v~~~fs~~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~--~-~~~~~~~~~~~---------- 214 (626)
T KOG1175|consen 148 HSSVFAGFSAKELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKS--R-PVWLDLIVSRR---------- 214 (626)
T ss_pred EEEeeccCCHHHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccc--c-ccceeeEEecc----------
Confidence 999999999999999999999999999774432 2222222211100 0 00111111111
Q ss_pred cCCChHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHH-HHHHHHHHHhccCCCcEEEEecCcc
Q 008389 168 LGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAY-LMSLSVALIWGMNEGAVYLWTLPMF 246 (567)
Q Consensus 168 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~-~~~~~~~~~~~~~~~d~~~~~~p~~ 246 (567)
.....++.++....+... ..+.+.+|+.+|+|||||||.||++.+++.... ..+......++++++|++++.....
T Consensus 215 --~~d~~~~~~~~~a~~~~~-~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~d~q~~dv~~~~~d~G 291 (626)
T KOG1175|consen 215 --NRDLFWSLELKKASPEHP-CVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHFDLQPSDVLWCASDLG 291 (626)
T ss_pred --cccccHHHHhhhcCCCCC-ceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcceeccCCCcceEEEecccC
Confidence 113456666555544433 345788999999999999999999999988654 4444455668999999999999999
Q ss_pred chhhhHHHHH-HhhhcCeeEEec--cCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcC-CCCchhhhhccCCCC
Q 008389 247 HCNGWCYTWS-LAALCGTSICLR--QVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTIL-PLPHVVHVNTAGAAP 322 (567)
Q Consensus 247 ~~~g~~~~~~-~~~~g~~~~~~~--~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~-~l~~lr~i~~~G~~l 322 (567)
|+.|..+.+. .++.|++.+++. ++++..+++.+.++++|.+++.|+.++.|.+........ .+++||.+.++||++
T Consensus 292 Wi~g~~~~~~gpl~~Ga~~vl~~g~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~~~~~~~~sLk~~~S~Gepi 371 (626)
T KOG1175|consen 292 WITGHSYVLYGPLLNGATVVLYEGPPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQEDVTSYSLKSLRTCGSVGEPI 371 (626)
T ss_pred eeeccchhhhhhhhcCcEEEEEcCCCCChhhhhhhHhhcceEEEEeccHHHHHHHHhccccccccccceEEEEeecCccC
Confidence 9999887666 556677777763 458999999999999999999999999888765554332 147799999999999
Q ss_pred CHHHHHHHHhc-CC-eeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCC
Q 008389 323 PPSVLHAMSQK-GF-HVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGK 400 (567)
Q Consensus 323 ~~~~~~~~~~~-~~-~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~ 400 (567)
.++..+++.+. +. +|.+.||+||+|+.+..+..... ...++..+.|.++. .+.|.|++ |..++.++
T Consensus 372 ~~~~~ew~~~~~~~~pv~e~~~qtEtG~~~i~~~~g~~---------p~~pg~~~~p~~g~-~v~i~de~-g~~~~~~~- 439 (626)
T KOG1175|consen 372 NPEAWEWWKRVTGLDPIYETYGQTETGGICITPKPGKL---------PIKPGSAGKPFPGY-DVQILDEN-GNELPPST- 439 (626)
T ss_pred CcchHHHHHHhcCccchhhceeeeccCceeeeccCCCC---------CcCccccCCCCCCc-ceEEECCC-CCCcCCCC-
Confidence 99999999954 66 69999999999999888765431 34568999999999 89999995 99998876
Q ss_pred ceEEEEEecc---cccccccCCCccch-hccc--CCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhc
Q 008389 401 TIGEIVMSGN---VVMKGYLKNPKANE-ETFA--NGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYL 474 (567)
Q Consensus 401 ~~Gei~v~~~---~~~~gy~~~~~~~~-~~~~--~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~ 474 (567)
+.|+|+++.+ ..+++||++.+... .-|. .|+|.|||.+++|+||++++.||.||+|+++|.++++.|||+++.+
T Consensus 440 ~~G~l~~~~~~P~~~~r~~~~n~erf~~~yf~k~pg~y~tGD~~~rd~dGY~~i~GR~DDviNvsGhRigtaEIE~al~~ 519 (626)
T KOG1175|consen 440 GNGELRLKPPWPPGMFRTLWGNHERFRAAYFKKFPGYYFTGDGGRRDEDGYYWILGRVDDVINVSGHRIGTAEIESALVE 519 (626)
T ss_pred ceeEEEEeCCCCccccccccCCHHHhhhhhcccCCceEEecCceEEcCCceEEEEecccccccccceeecHHHHHHHHhh
Confidence 7899999975 67899999988443 3344 8999999999999999999999999999999999999999999999
Q ss_pred CCCceeeEEEEeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHH
Q 008389 475 HPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLR 553 (567)
Q Consensus 475 ~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~ 553 (567)
||.|.|++|++.+++..|+.+.+||+++++ ..+.+++.++|+..+++.+.+++.|+.|.+++ ||+|.+||+.|+.||
T Consensus 520 hp~VaEsAvVg~p~~~~ge~v~aFvvl~~g--~~~~~~L~kel~~~VR~~igp~a~P~~I~~v~~LPkTrSGKimRr~lr 597 (626)
T KOG1175|consen 520 HPAVAESAVVGSPDPIKGEVVLAFVVLKSG--SHDPEQLTKELVKHVRSVIGPYAVPRLIVFVPGLPKTRSGKIMRRALR 597 (626)
T ss_pred CcchhheeeecCCCCCCCeEEEEEEEEcCC--CCChHHHHHHHHHHHHhhcCcccccceeEecCCCCccccchhHHHHHH
Confidence 999999999999999999999999999999 55667889999999999999999999999998 999999999999999
Q ss_pred HHHHHcCCcccc
Q 008389 554 AKAKEMGPVRKS 565 (567)
Q Consensus 554 ~~~~~~~~~~~~ 565 (567)
++....+.-+.+
T Consensus 598 ki~~g~~~~d~s 609 (626)
T KOG1175|consen 598 KIASGKAVGDTS 609 (626)
T ss_pred HHhccCcccccc
Confidence 998877544443
|
|
| >PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-65 Score=532.96 Aligned_cols=489 Identities=20% Similarity=0.221 Sum_probs=374.4
Q ss_pred cC-HHHHHhhhhhcCCCceeEEECC----ccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcC
Q 008389 20 LT-PLWFLDRAATVHPTRTSVVHGS----TRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAG 94 (567)
Q Consensus 20 ~t-~~~~l~~~a~~~p~~~a~~~~~----~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G 94 (567)
|+ +.+.|++++.++|+++|+++.+ +++||+||.++++++|+.|.+. ++||+|+++++|++++++++|||+++|
T Consensus 1 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~ty~el~~~~~~lA~~L~~~--~~g~~V~l~~~~~~e~~~~~la~~~~G 78 (525)
T PRK05851 1 MNELAAALSDAMTASGRDLVVLDRESGLWRRHPWPEVHGRAENVAARLLDR--DRPGAVGLVGEPTVELVAAIQGAWLAG 78 (525)
T ss_pred CchHHHHHHHHhcCCCCceEEeCCCCCcceeecHHHHHHHHHHHHHHHHhc--CCCCeEEEEcCCCHHHHHHHHHHHHcC
Confidence 34 7889999999999999999987 7899999999999999999987 799999999999999999999999999
Q ss_pred Ceeeeccc-------cCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhc
Q 008389 95 AVLNAVNI-------RLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYA 167 (567)
Q Consensus 95 ~~~v~i~~-------~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 167 (567)
+++++++. ....+++.++++.++++++|++....+.+.... . . +.+.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~-----------~--~-~~~~~~---------- 134 (525)
T PRK05851 79 AAVSILPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHLERLRAVD-----------S--S-VTVHDL---------- 134 (525)
T ss_pred CCCcCCCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHHHHHHHhh-----------c--c-cccccc----------
Confidence 98654321 122345667889999999999877554433210 0 0 001000
Q ss_pred cCCChHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccC-CCcEEEEecCcc
Q 008389 168 LGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMN-EGAVYLWTLPMF 246 (567)
Q Consensus 168 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~-~~d~~~~~~p~~ 246 (567)
......... ....+..++++++|+|||||||.||+|.++|+++.+.+......+++. ++|++++.+|++
T Consensus 135 --------~~~~~~~~~--~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~ 204 (525)
T PRK05851 135 --------ATAAHTNRS--ASLTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARVGLDAATDVGCSWLPLY 204 (525)
T ss_pred --------ccccccccc--ccCCCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCCCCeEEEcCCCc
Confidence 000000000 001124568999999999999999999999999999988888888888 999999999999
Q ss_pred chhhhHHHHHHhhhcCeeEEecc--C--CHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCC-CCcCCCCchhhhhccCCC
Q 008389 247 HCNGWCYTWSLAALCGTSICLRQ--V--TAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSE-DTILPLPHVVHVNTAGAA 321 (567)
Q Consensus 247 ~~~g~~~~~~~~~~g~~~~~~~~--~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~-~~~~~l~~lr~i~~~G~~ 321 (567)
|.+|+...+.+++.|+++++.+. + ++..+++.++++++|++...|.++..+...... .... ++++|.+++||++
T Consensus 205 h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~~~~~~~~~-l~~lr~~~~gG~~ 283 (525)
T PRK05851 205 HDMGLAFLLTAALAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIGKYARRVSDVD-LGALRVALNGGEP 283 (525)
T ss_pred cCccHHHHHHHHHcCCeEEEcCHHHHHHCHHHHHHHHHHhCCeEEeCCcHHHHHHHHhhccccCCC-HHHhheeEecccc
Confidence 99999887778888888877652 3 578899999999999885544444444332221 1223 7899999999999
Q ss_pred CCHHHHHHHHh----cCC---eeeeccCCccCcCCcccccCCCCCC--CC--ChhhhhhhhccCCceeccccceeEeeCC
Q 008389 322 PPPSVLHAMSQ----KGF---HVTHTYGLSETYGPSTVCAWKPEWD--SL--PPETQARMKARQGVRFIGLEKLDVIDTR 390 (567)
Q Consensus 322 l~~~~~~~~~~----~~~---~i~~~YG~tE~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~G~~~~~~~~~~i~d~~ 390 (567)
+++++.+++.+ +++ ++++.||+||++..++......... .. .........+++|.|++++ +++|+|++
T Consensus 284 l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~-~v~i~d~~ 362 (525)
T PRK05851 284 VDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGM-EVRISPGD 362 (525)
T ss_pred CCHHHHHHHHHHHhhcCCChhhcccccchhhhceEEEecCCCCCceeeeeccccCcccceeeeecCCCCCc-EEEEECCC
Confidence 99999888874 344 5999999999976554322110000 00 0000112346789999999 89999988
Q ss_pred CCCccCCCCCceEEEEEecccccccccCCCccchhcccCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHH
Q 008389 391 TQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVEN 470 (567)
Q Consensus 391 ~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~ 470 (567)
.+.+++.+ +.|||+++|+.++.||++++..+ .+|||+|||+|+++ +|.++++||.||+||++|++|+|.+||+
T Consensus 363 ~~~~~~~g--~~GEl~v~g~~~~~GY~~~~~~~----~~~~~~TGDl~~~~-~G~l~~~GR~dd~i~~~G~~v~p~eIE~ 435 (525)
T PRK05851 363 GAAGVAGR--EIGEIEIRGASMMSGYLGQAPID----PDDWFPTGDLGYLV-DGGLVVCGRAKELITVAGRNIFPTEIER 435 (525)
T ss_pred CCccCCCC--CeEEEEEecCchhhccccCCccC----CCCceeccceEEEE-CCEEEEEeecCCEEEECCEEeCHHHHHH
Confidence 66678877 88999999999999999988643 37899999999997 8999999999999999999999999999
Q ss_pred HHhcCCCceeeEEEEeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCC--CCCceeecCc---ccCCCCc
Q 008389 471 MMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAY--WVPKSIVFGP---LPKTATG 545 (567)
Q Consensus 471 ~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~--~~p~~i~~~~---lP~t~~G 545 (567)
+|.++|+|.+++|++.+++..++.+.++++.... ..+.+ ++.+.++++++.+ +.|..+.+++ ||+|++|
T Consensus 436 ~l~~~p~V~~~~vv~~~~~~~~~~~~~~v~~~~~--~~~~~----~~~~~~~~~l~~~l~~~P~~~~~v~~~~lP~t~~G 509 (525)
T PRK05851 436 VAAQVRGVREGAVVAVGTGEGSARPGLVIAAEFR--GPDEA----GARSEVVQRVASECGVVPSDVVFVAPGSLPRTSSG 509 (525)
T ss_pred HHHhCCCcccceEEEEEecCCCCceeEEEEEEec--CcchH----HHHHHHHHHHHHHhCCCccEEEEECCCCcCcCcch
Confidence 9999999999999999988878777777664421 22332 3334444444444 7898888764 9999999
Q ss_pred cccHHHHHHHHHHc
Q 008389 546 KIQKHVLRAKAKEM 559 (567)
Q Consensus 546 Ki~r~~l~~~~~~~ 559 (567)
|++|+.|++.+.+.
T Consensus 510 Ki~r~~L~~~~~~~ 523 (525)
T PRK05851 510 KLRRLAVKRSLEAA 523 (525)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988764
|
|
| >PRK07059 Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-64 Score=529.82 Aligned_cols=508 Identities=26% Similarity=0.342 Sum_probs=410.7
Q ss_pred ccCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCeee
Q 008389 19 ALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLN 98 (567)
Q Consensus 19 ~~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v 98 (567)
+.++.++|.+.++++|+++|+++.+..+||.||+++++++|..|.+.|+++||+|+++++|++++++++|||+++|++++
T Consensus 22 ~~~i~~~l~~~a~~~p~~~a~~~~~~~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v 101 (557)
T PRK07059 22 YPSLADLLEESFRQYADRPAFICMGKAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLRAGYVVV 101 (557)
T ss_pred CCCHHHHHHHHHHHcCCCceEEEcCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCeEEe
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCc-cc-------------c
Q 008389 99 AVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDP-KD-------------L 164 (567)
Q Consensus 99 ~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~-------------~ 164 (567)
|+++.++.+++.++++.++++++++++.....+.+..... ....++......... .. .
T Consensus 102 ~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (557)
T PRK07059 102 NVNPLYTPRELEHQLKDSGAEAIVVLENFATTVQQVLAKT--------AVKHVVVASMGDLLGFKGHIVNFVVRRVKKMV 173 (557)
T ss_pred ccCcccCHHHHHHHHHccCceEEEEchhhHHHHHHhhccc--------CCceeEEecccccccccccccccccccccccc
Confidence 9999999999999999999999999877655444332111 122222221100000 00 0
Q ss_pred hhccCCChHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhc----cC---CCc
Q 008389 165 KYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWG----MN---EGA 237 (567)
Q Consensus 165 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~----~~---~~d 237 (567)
..........+.+.+..............++++++++|||||||.||+|.++|.+++.++......+. .. ...
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 253 (557)
T PRK07059 174 PAWSLPGHVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPDQL 253 (557)
T ss_pred cccCCCCcccHHHHhhccCCCCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccccCCCCCc
Confidence 00011223445555544332222223456789999999999999999999999999876544333221 11 234
Q ss_pred EEEEecCccchhhhHH-HHHHhhhcCeeEEec-cCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhh
Q 008389 238 VYLWTLPMFHCNGWCY-TWSLAALCGTSICLR-QVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHV 315 (567)
Q Consensus 238 ~~~~~~p~~~~~g~~~-~~~~~~~g~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i 315 (567)
.+++.+|++|.+++.. .+..+..|++.++.+ ..++..+++.++++++|.+.++|+++..+.......... ++++|.+
T Consensus 254 ~~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~-~~~l~~~ 332 (557)
T PRK07059 254 NFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPDFDKLD-FSKLIVA 332 (557)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcCcCcCC-chhheEE
Confidence 6788899999988753 445566777777665 358899999999999999999999999999876554444 7899999
Q ss_pred hccCCCCCHHHHHHHHh-cCCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCc
Q 008389 316 NTAGAAPPPSVLHAMSQ-KGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQP 394 (567)
Q Consensus 316 ~~~G~~l~~~~~~~~~~-~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~ 394 (567)
+.||+++++.+.+.+.+ +++++++.||+||++.+++.+.... .....++|.|++++ .++|+|++ +++
T Consensus 333 ~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~----------~~~~~~vG~p~~g~-~v~i~d~~-~~~ 400 (557)
T PRK07059 333 NGGGMAVQRPVAERWLEMTGCPITEGYGLSETSPVATCNPVDA----------TEFSGTIGLPLPST-EVSIRDDD-GND 400 (557)
T ss_pred EeccccCCHHHHHHHHHHhCCCeeeccccccccchhhcCCCCC----------CCcCCcccCccCCc-EEEEECCC-CCC
Confidence 99999999999988885 5899999999999987655432111 11236889999999 89999976 888
Q ss_pred cCCCCCceEEEEEecccccccccCCCccchhcc-cCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHh
Q 008389 395 VPADGKTIGEIVMSGNVVMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMY 473 (567)
Q Consensus 395 ~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~ 473 (567)
++.| +.|||+++|+.++.||+++++.+...| .+|||+|||+|+++++|.+++.||.+|+|+++|.+++|.+||+.+.
T Consensus 401 ~~~g--~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~p~~iE~~l~ 478 (557)
T PRK07059 401 LPLG--EPGEICIRGPQVMAGYWNRPDETAKVMTADGFFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPNEIEEVVA 478 (557)
T ss_pred CCCC--CceEEEEeCCccchhhhcCHHHHhhhcccCCceecCcEEEEcCCCcEEEecccccceEECCEEEcHHHHHHHHH
Confidence 9888 789999999999999999998887776 5899999999999999999999999999999999999999999999
Q ss_pred cCCCceeeEEEEeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHH
Q 008389 474 LHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVL 552 (567)
Q Consensus 474 ~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l 552 (567)
++++|.+++|++.++...|+.++++++..+. ..+. +++++++.++++.+.+|..+.+++ +|+|++||++|+.|
T Consensus 479 ~~~~V~~~~v~~~~~~~~ge~~~~~v~~~~~--~~~~----~~l~~~~~~~l~~~~~P~~i~~v~~~P~t~~GK~~r~~L 552 (557)
T PRK07059 479 SHPGVLEVAAVGVPDEHSGEAVKLFVVKKDP--ALTE----EDVKAFCKERLTNYKRPKFVEFRTELPKTNVGKILRREL 552 (557)
T ss_pred hCCceeEEEEEecccCCCCeeEEEEEEeCCC--CCCH----HHHHHHHHHhcccccCCcEEEEeccCCCCcccceeHHHH
Confidence 9999999999999988888889998886543 2333 678889999999999999999888 99999999999999
Q ss_pred HHH
Q 008389 553 RAK 555 (567)
Q Consensus 553 ~~~ 555 (567)
+++
T Consensus 553 ~~~ 555 (557)
T PRK07059 553 RDG 555 (557)
T ss_pred Hhh
Confidence 865
|
|
| >TIGR03205 pimA dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-63 Score=526.01 Aligned_cols=510 Identities=25% Similarity=0.372 Sum_probs=407.5
Q ss_pred cccCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCee
Q 008389 18 MALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVL 97 (567)
Q Consensus 18 ~~~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~ 97 (567)
++-|+.++|+++++++|+++|+++.++.+||.||.++++++|..|.+.|+.+||+|+++++|+++++++++||+++|+++
T Consensus 19 ~~~~~~~~~~~~~~~~p~~~a~~~~~~~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~~~ 98 (541)
T TIGR03205 19 ARGTLPDLLSKAAADYGPRPALEFRDRPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPINFFGALKAGARV 98 (541)
T ss_pred CCCCHHHHHHHHHHHcCCCceEEECCcEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeEE
Confidence 35599999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcc---cchhccCCChHH
Q 008389 98 NAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPK---DLKYALGRGAVE 174 (567)
Q Consensus 98 v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~ 174 (567)
+|++|..+.+++.++++.++++.+++++.. .......+.... . ....++.+........ ...........+
T Consensus 99 v~l~~~~~~~~l~~~i~~~~~~~vi~~~~~-~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (541)
T TIGR03205 99 VHLSPLDGERALSHKLSDSGARLLITSDLA-ALLPMALKFLEK--G---LLDRLIVCEDDNWGKVGTPQAPIPADPRIVT 172 (541)
T ss_pred EecCCCCCHHHHHHHHhhcCceEEEEeCch-hhhHHHHHhhhc--c---cceEEEEecccccccccccccccCCCccccc
Confidence 999999999999999999999999997642 111111111110 0 1233333332110000 000011123345
Q ss_pred HHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHh------ccCCCcEEEEecCccch
Q 008389 175 YEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIW------GMNEGAVYLWTLPMFHC 248 (567)
Q Consensus 175 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~------~~~~~d~~~~~~p~~~~ 248 (567)
+++++........+ ....++++++++|||||||.||+|.++|+++....... ..+ .....+++++..|++|.
T Consensus 173 ~~~~~~~~~~~~~~-~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~p~~~~ 250 (541)
T TIGR03205 173 YADFVKGAAAPAEW-PAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIY-DVWGKPSRATRGDVERVICVLPLFHI 250 (541)
T ss_pred HHHHHhcCCCCCCC-CCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHH-HhhcccccccCCCCceEEEeccHHHH
Confidence 66666543222111 23456899999999999999999999999987654422 222 12345789999999999
Q ss_pred hhhHHHHH-HhhhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHH
Q 008389 249 NGWCYTWS-LAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVL 327 (567)
Q Consensus 249 ~g~~~~~~-~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~ 327 (567)
+++...+. ++..|++++....+++..+++.|+++++|++.++|+++..+++........ ++++|.+++||+++++++.
T Consensus 251 ~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~l~~i~~gg~~~~~~~~ 329 (541)
T TIGR03205 251 YALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPSLEKRD-LSSLATIGSGGAPLPVEVA 329 (541)
T ss_pred HHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCeEeechHHHHHHHHhCccccccC-ccccceEEEccccCCHHHH
Confidence 88876544 445566666666789999999999999999999999999998754333333 7889999999999999999
Q ss_pred HHHHh-cCCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEee-CCCCCccCCCCCceEEE
Q 008389 328 HAMSQ-KGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVID-TRTQQPVPADGKTIGEI 405 (567)
Q Consensus 328 ~~~~~-~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d-~~~~~~~~~~~~~~Gei 405 (567)
+++.+ ++.++++.||+||++..++.+.... .....++|.|++++ .++|.+ .+++++++.+ +.|||
T Consensus 330 ~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~----------~~~~~~~G~~~~~~-~~~v~~~d~~~~~~~~g--~~Gel 396 (541)
T TIGR03205 330 NFFERKTGLKLKSGWGMTETCSPGTGHPPEG----------PDKPGSIGLMLPGI-ELDVVSLDDPTKVLPPG--EVGEL 396 (541)
T ss_pred HHHHHHhCCCeecccccccCCcccccCCCCC----------CCCCCCcceeccCc-eeEEEecCCCCccCCCC--CeeEE
Confidence 98875 4899999999999987665442211 11235789999999 788764 3447888877 78999
Q ss_pred EEecccccccccCCCccchhcccCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEE
Q 008389 406 VMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVA 485 (567)
Q Consensus 406 ~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~ 485 (567)
+++|++++.||+++++.+.+.|.++||+|||+++++++|++++.||.+|+|+++|++++|.+||+.+.++++|.+++|++
T Consensus 397 ~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~ 476 (541)
T TIGR03205 397 RIRGPNVTRGYWNRPEESAEAFVGDRFLTGDIGYMDTDGYFFLVDRKKDMIISGGFNVYPQMIEQAIYEHPGVQEVIVIG 476 (541)
T ss_pred EEecCCccccccCChhhhHhhhccCCcccCceEEEcCCceEEEEccccCeEEECCEEECHHHHHHHHHhCCCeeeEEEEe
Confidence 99999999999999999988999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHH
Q 008389 486 RADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLR 553 (567)
Q Consensus 486 ~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~ 553 (567)
.+++..++.+++++++.++....+. +++.++++++|+.+++|..+.+++ ||+|++||++|++|+
T Consensus 477 ~~~~~~~~~~~~~v~~~~~~~~~~~----~~l~~~~~~~l~~~~~P~~i~~~~~iP~t~~gK~~r~~l~ 541 (541)
T TIGR03205 477 IPDQYRGEAAKAFVKLRPGAKPFSL----DELRAFLAGKLGKHELPVAVEFVDELPRTPVGKLSRHELR 541 (541)
T ss_pred cCCcccCceEEEEEEECCCCCcCCH----HHHHHHHHhhcccccCCcEEEEeccCCCCcccceeHhhcC
Confidence 9988878899999998876423344 678889999999999999999888 999999999999874
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. |
| >COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-65 Score=512.51 Aligned_cols=501 Identities=26% Similarity=0.346 Sum_probs=389.0
Q ss_pred ccCHHHHHhhhhhcCCCceeEEECC----ccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcC
Q 008389 19 ALTPLWFLDRAATVHPTRTSVVHGS----TRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAG 94 (567)
Q Consensus 19 ~~t~~~~l~~~a~~~p~~~a~~~~~----~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G 94 (567)
..++.+++.+.++.+|+.+|+.... +.+||+|+.+++.++|.+|...|+..||+|+|++.|+++|+++.+||+.+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrvai~a~nr~eW~i~d~a~~~~g 94 (613)
T COG1022 15 IHTLPKRLAERVKDRPDGVALMYKELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALG 94 (613)
T ss_pred cccHHHHHHHHhhcCCcceeEeeecCCcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHHcC
Confidence 4688999999999999999998643 899999999999999999999999779999999999999999999999999
Q ss_pred CeeeeccccCChHHHHHHHhccCceEEEEcccch-HHHHHHHHHHhhhcCCCCCCCeEEEecC---CCCC--cccchhcc
Q 008389 95 AVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYF-KLAEEALKIMEEKSNGRFKPPLLIVIGD---ESCD--PKDLKYAL 168 (567)
Q Consensus 95 ~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~--~~~~~~~~ 168 (567)
++.||++++.+++++.++|+.++++++|++.... +.+......++ ....++...+ .... ........
T Consensus 95 ~v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (613)
T COG1022 95 AVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCP-------KVVDLIVIIDLVREAVEAKALVLEVFP 167 (613)
T ss_pred CeEEecCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhcccc-------chhhhhhhhhhhhhccchhhccccccc
Confidence 9999999999999999999999999999988543 33333322111 0111110000 0000 00000000
Q ss_pred CCChHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhc-cCCCcEEEEecCccc
Q 008389 169 GRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWG-MNEGAVYLWTLPMFH 247 (567)
Q Consensus 169 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~-~~~~d~~~~~~p~~~ 247 (567)
..+...+ . +.... ......+..++|.|.|+|||||||.||||.+||+|+++++......+. ++++|+.++.+|+.|
T Consensus 168 ~~~~~~~-~-~~~~~-~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~~~~~~d~~LsfLPlaH 244 (613)
T COG1022 168 DEGISLF-L-IDSAG-LEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSFLPLAH 244 (613)
T ss_pred cccchhh-h-hcccc-cccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCCCCCCCcEEEEeCcHHH
Confidence 1111111 1 11111 111224678899999999999999999999999999999999999997 999999999999999
Q ss_pred hhhhHHHHHHhhhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCC----C-------------------
Q 008389 248 CNGWCYTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSE----D------------------- 304 (567)
Q Consensus 248 ~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~----~------------------- 304 (567)
++.+.+..... .+++..+....++..++..+++++||++.++|..|+.+.+.... .
T Consensus 245 i~Er~~~~~~~-~~~g~~~~~~~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~~~~~ 323 (613)
T COG1022 245 IFERAFEGGLA-LYGGVTVLFKEDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKI 323 (613)
T ss_pred HHHHHHHHHHH-hhcceEEEecCCHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence 99998763333 34444455567999999999999999999999999887632100 0
Q ss_pred ------------------------CcCCCCchhhhhccCCCCCHHHHHHHHhcCCeeeeccCCccCcCCcccccCCCCCC
Q 008389 305 ------------------------TILPLPHVVHVNTAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWD 360 (567)
Q Consensus 305 ------------------------~~~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~ 360 (567)
.......+|.+++||+++++++..+++..|+++.++||+||+++.++.+...
T Consensus 324 ~~~~~~~~~~~~~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~lGi~i~eGYGlTEts~~~~v~~~~---- 399 (613)
T COG1022 324 SRALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSLGIPILEGYGLTETSAVVSVNPPD---- 399 (613)
T ss_pred HhhhcccCCcchhhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHHcCCCeEEEecccccccceEEcccc----
Confidence 0010247788999999999999999999999999999999998888876433
Q ss_pred CCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEecccccccccCCCccchhccc-CCccccCceEE
Q 008389 361 SLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFA-NGWYHTGDLGV 439 (567)
Q Consensus 361 ~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~-~g~~~TGDl~~ 439 (567)
....+++|.|+|++ +++|.|. |||+|+||++++|||++|+.|.+.|. ||||+|||+|.
T Consensus 400 -------~~~~gtvG~p~p~~-evKI~d~-------------GEilVRG~~Vm~GYyk~pe~Taeaf~~DGWf~TGDlg~ 458 (613)
T COG1022 400 -------RFVLGTVGKPLPGI-EVKIADD-------------GEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGE 458 (613)
T ss_pred -------CcccCCcCCcCCCc-eEEEccC-------------ceEEEecchhcchhcCChHHHhhhccccCCcccCceeE
Confidence 23458899999999 8999982 99999999999999999999999996 99999999999
Q ss_pred EeCCCcEEEeccccceee-eCceecchHHHHHHHhcCCCceeeEEEEeecCCCCCcceEEEEEcCCccc-----------
Q 008389 440 KHPDNYIEIKDRSKDIII-SGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDK----------- 507 (567)
Q Consensus 440 ~~~~g~l~~~GR~~d~i~-~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~----------- 507 (567)
++++|+|+++||.+|+|+ .+|++|.|..||..+.++|.|.+++|++..+.. +.+.|++..+.-.
T Consensus 459 ~d~~g~L~i~gRkK~~i~l~~GknIaP~~IE~~l~~~~~I~qi~vvg~~k~~----~~AlIvp~~~~l~~~a~~~~~~~~ 534 (613)
T COG1022 459 LDEDGYLVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVGDDKKF----LVALIVPDFDALEKWAESLNKVIS 534 (613)
T ss_pred EcCCCcEEEeecccceEECCCCcccChHHHHHHHhcCCCeeEEEEEecCCcc----eEEEEeCCHHHHHHHHHhcccccc
Confidence 999999999999999999 999999999999999999999999999954444 8888888664211
Q ss_pred hhh------HHHHHHHHHHHHh---cCCCCCCCceeecCc--cc-----CCCCccccHHHHHHHHHHc
Q 008389 508 SNE------QQLAEDIMKFCRA---KMPAYWVPKSIVFGP--LP-----KTATGKIQKHVLRAKAKEM 559 (567)
Q Consensus 508 ~~~------~~~~~~l~~~l~~---~l~~~~~p~~i~~~~--lP-----~t~~GKi~r~~l~~~~~~~ 559 (567)
.+. ..+.+.+...+.+ ....+..+..+.+.+ +. .|++=|++|+...+.+.+.
T Consensus 535 ~~~~~l~~~~~l~~~~~~~i~~~~~~~~~~E~i~~~~~~~~~~t~~~~~~t~t~klkR~~i~~~~~~~ 602 (613)
T COG1022 535 ASREELARDPKLLKLILPRVNKGNKRLFGFEQIKKFVLLPKEFTPENGELTPTLKLKRHVILDRYKDE 602 (613)
T ss_pred CCHHHHhhCHHHHHHHHHHHHHHhhcccchhhhheeeecccccccccCccccchhhhHHHHHHhhhhH
Confidence 011 1222333333332 234556666666543 33 6889999999998887764
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-64 Score=577.64 Aligned_cols=514 Identities=20% Similarity=0.263 Sum_probs=416.8
Q ss_pred ccCHHHHHhhhhhcCCCceeEEEC-CccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCee
Q 008389 19 ALTPLWFLDRAATVHPTRTSVVHG-STRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVL 97 (567)
Q Consensus 19 ~~t~~~~l~~~a~~~p~~~a~~~~-~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~ 97 (567)
..|+.+.+++.++++|+++|+++. ++++||+||+++++++|+.|.+ ++++||+|+++++|+++++++++||+++|+++
T Consensus 614 ~~~l~~~~~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~-~~~~g~~V~i~~~n~~~~~~~~la~~~~G~v~ 692 (1146)
T PRK08633 614 LPPLAEAWIDTAKRNWSRLAVADSTGGELSYGKALTGALALARLLKR-ELKDEENVGILLPPSVAGALANLALLLAGKVP 692 (1146)
T ss_pred CCCHHHHHHHHHHhcCCCcEEEcCCCCcCcHHHHHHHHHHHHHHHHH-hCCCCCeEEEECCCchHHHHHHHHHHHcCCEE
Confidence 468999999999999999999974 5899999999999999999987 48999999999999999999999999999999
Q ss_pred eeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHHHH
Q 008389 98 NAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEK 177 (567)
Q Consensus 98 v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (567)
+|+++..+.+++.++++++++++++++++..+.+.+..... .......++.+++..... .....+.+
T Consensus 693 v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~--------~~~~~~~~ 759 (1146)
T PRK08633 693 VNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDL-----ELPENVKVIYLEDLKAKI--------SKVDKLTA 759 (1146)
T ss_pred EEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCch-----hcccCceEEEeehhcccc--------chhHHHHH
Confidence 99999999999999999999999999877655443210000 000223344443211100 01112222
Q ss_pred HHhcCC-CC----CCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhhH
Q 008389 178 FLQTGD-PQ----FDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWC 252 (567)
Q Consensus 178 ~l~~~~-~~----~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~ 252 (567)
...... +. .....+..++++++++|||||||.||+|.+||+++..+.......++++++|++++.+|++|..|+.
T Consensus 760 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~ 839 (1146)
T PRK08633 760 LLAARLLPARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRNDDVILSSLPFFHSFGLT 839 (1146)
T ss_pred HHHhccCCHHHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhcCCCCCCEEEEcCcHHHHHhHH
Confidence 222110 00 0001235678999999999999999999999999999988888888999999999999999999987
Q ss_pred H-HHHHhhhcCeeEEec-cCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHH
Q 008389 253 Y-TWSLAALCGTSICLR-QVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAM 330 (567)
Q Consensus 253 ~-~~~~~~~g~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~ 330 (567)
. .+.....|+++++.+ .+++..+++.++++++|++.++|++++.+.+........ ++++|.+++||+++++++.+.+
T Consensus 840 ~~~~~~l~~g~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~~~~gg~~~~~~~~~~~ 918 (1146)
T PRK08633 840 VTLWLPLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKLHPLM-FASLRLVVAGAEKLKPEVADAF 918 (1146)
T ss_pred HHHHHHHHCCCEEEEeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhccccCccc-CCCeeeEEEcCCcCCHHHHHHH
Confidence 6 455566777777665 478999999999999999999999999998765444444 8899999999999999999999
Q ss_pred Hh-cCCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEec
Q 008389 331 SQ-KGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSG 409 (567)
Q Consensus 331 ~~-~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~ 409 (567)
++ +++++++.||+||++++++........... ........+++|.|+|++ +++|+|++++++++.| +.|||+++|
T Consensus 919 ~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~-~~~~~~~~~~vG~p~~~~-~v~i~d~~~~~~~~~g--~~Gel~v~g 994 (1146)
T PRK08633 919 EEKFGIRILEGYGATETSPVASVNLPDVLAADF-KRQTGSKEGSVGMPLPGV-AVRIVDPETFEELPPG--EDGLILIGG 994 (1146)
T ss_pred HHHhCCCeecccccccCcceEEEecCccccccc-ccccCCCCCCccccCCCC-EEEEEcCCCCccCCCC--CceEEEEcC
Confidence 85 599999999999998766543221110000 001112357899999999 8999999889999988 889999999
Q ss_pred ccccccccCCCccchhcccC----CccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCC--CceeeEE
Q 008389 410 NVVMKGYLKNPKANEETFAN----GWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHP--AVLEASV 483 (567)
Q Consensus 410 ~~~~~gy~~~~~~~~~~~~~----g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~--~i~~~~v 483 (567)
+.++.||+++++.+.+.|.+ |||+|||+|++++||++++.||.||+||++|++|+|.|||+++.+++ .+.+++|
T Consensus 995 ~~~~~gY~~~~~~t~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~~~~~~~~v 1074 (1146)
T PRK08633 995 PQVMKGYLGDPEKTAEVIKDIDGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIGGEMVPLGAVEEELAKALGGEEVVFAV 1074 (1146)
T ss_pred CCccccccCCccchHHHhhcCCCCCeEECCCEEEEcCCceEEEEecccchhhhCcEEECHHHHHHHHHhccCCCCceEEE
Confidence 99999999999999888877 99999999999999999999999999999999999999999999998 4668999
Q ss_pred EEeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHh-cCCCCCCCceeecCc-ccCCCCccccHHHHHHHHHHc
Q 008389 484 VARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRA-KMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKEM 559 (567)
Q Consensus 484 ~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~ 559 (567)
++.+++..|+.++++++.. ..+. +++++++.+ +++.+++|..+++++ +|+|++||++|+.|++...+.
T Consensus 1075 ~~~~~~~~g~~~~~~v~~~----~~~~----~~l~~~~~~~~l~~~~~P~~i~~~~~iP~t~~GKi~r~~L~~~~~~~ 1144 (1146)
T PRK08633 1075 TAVPDEKKGEKLVVLHTCG----AEDV----EELKRAIKESGLPNLWKPSRYFKVEALPLLGSGKLDLKGLKELALAL 1144 (1146)
T ss_pred EeccCCCCCcEEEEEEecC----ccCH----HHHHHHHHhcCCCcccCCcEEEEecCcCCCCCCCCcHHHHHHHHHHh
Confidence 9999998899999988752 2233 567777764 699999999999888 999999999999999987664
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-65 Score=625.18 Aligned_cols=488 Identities=19% Similarity=0.253 Sum_probs=416.3
Q ss_pred ccCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCeee
Q 008389 19 ALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLN 98 (567)
Q Consensus 19 ~~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v 98 (567)
+.|+.++|++++.++|+++|+++.++++||+||+++++++|+.|.+.|+++|++|+++++|++++++++|||+++|++++
T Consensus 3094 ~~~~~~l~~~~a~~~p~~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~vv~~lavl~aGa~~v 3173 (3956)
T PRK12467 3094 ERLVHQLIEAQVARTPEAPALVFGDQQLSYAELNRRANRLAHRLIAIGVGPDVLVGVAVERSVEMIVALLAVLKAGGAYV 3173 (3956)
T ss_pred cccHHHHHHHHHHhCCCcceEeeCCcccCHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeCCCHHHHHHHHHHHhhCcEee
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHHHHH
Q 008389 99 AVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKF 178 (567)
Q Consensus 99 ~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (567)
|++|.++.+++.++++.+++++++++....+.+... .....+.++....
T Consensus 3174 pld~~~p~~rl~~il~~~~~~~vlt~~~~~~~~~~~------------~~~~~~~~~~~~~------------------- 3222 (3956)
T PRK12467 3174 PLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLPAP------------AGDTALTLDRLDL------------------- 3222 (3956)
T ss_pred cCCCCChHHHHHHHHhCCCCcEEEechhhhhhcccc------------cCCceeeecchhh-------------------
Confidence 999999999999999999999999987654432110 1112222222100
Q ss_pred HhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhhHHHHHHh
Q 008389 179 LQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLA 258 (567)
Q Consensus 179 l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~ 258 (567)
.......+.....++++++++|||||||.||||.++|+++.+.+......++++++|+++...|++|..+....+..+
T Consensus 3223 --~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~L 3300 (3956)
T PRK12467 3223 --NGYSENNPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAYELDANDRVLLFMSFSFDGAQERFLWTL 3300 (3956)
T ss_pred --cccCCCCCcccCCCCceEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhcCCCcCCEEEEecCccHhHHHHHHHHHH
Confidence 011111122335678999999999999999999999999999999998999999999999999999999988888889
Q ss_pred hhcCeeEEecc--CCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHHHhc--C
Q 008389 259 ALCGTSICLRQ--VTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQK--G 334 (567)
Q Consensus 259 ~~g~~~~~~~~--~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~--~ 334 (567)
..|+++++.+. .++..+++.|+++++|++.++|+++..+++..... . ++++|.+++|||+++++..+.+.+. +
T Consensus 3301 ~~G~~l~i~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~--~-~~~lr~~~~gGe~~~~~~~~~~~~~~~~ 3377 (3956)
T PRK12467 3301 ICGGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDAGGA--D-CASLDIYVFGGEAVPPAAFEQVKRKLKP 3377 (3956)
T ss_pred hCCCEEEECCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhccccc--C-CCCceEEEEecCCCCHHHHHHHHHhCCC
Confidence 99999888765 68999999999999999999999999998654322 2 7889999999999999999999854 6
Q ss_pred CeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEecccccc
Q 008389 335 FHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMK 414 (567)
Q Consensus 335 ~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~~ 414 (567)
+++++.||+||++..++......+ ........++|+|++++ .+.|+|.+ ++++|.| +.|||+|+|+.+++
T Consensus 3378 ~~l~n~YG~TE~~~~~~~~~~~~~------~~~~~~~~~iG~p~~~~-~~~v~d~~-~~~vp~G--~~GEL~i~G~~v~~ 3447 (3956)
T PRK12467 3378 RGLTNGYGPTEAVVTVTLWKCGGD------AVCEAPYAPIGRPVAGR-SIYVLDGQ-LNPVPVG--VAGELYIGGVGLAR 3447 (3956)
T ss_pred CEEEeCcccchhEeeeEEEecccc------cccCCCCCCCccccCCC-EEEEECCC-CCCCCCC--CCceEEEcchhhhh
Confidence 789999999999776654332111 01112236789999999 89999976 8999998 89999999999999
Q ss_pred cccCCCccchhccc--------CCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEe
Q 008389 415 GYLKNPKANEETFA--------NGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVAR 486 (567)
Q Consensus 415 gy~~~~~~~~~~~~--------~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~ 486 (567)
||+++++.+.++|. ++||+|||+|++++||.++++||+||+||++|.+|++.|||++|.++|+|.+++|++.
T Consensus 3448 GY~~~~~~T~~~F~~~p~~~~g~r~yrTGDl~~~~~dG~l~~~GR~d~~iki~G~rIe~~EIE~~l~~~p~V~~a~v~~~ 3527 (3956)
T PRK12467 3448 GYHQRPSLTAERFVADPFSGSGGRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLLQHPSVREAVVLAR 3527 (3956)
T ss_pred hccCCcccchhhccCCCCCCCCceeeccchhheecCCCcEEEeccccceEeeceEeecHHHHHHHHhhCcccceEEEEEe
Confidence 99999999999983 2479999999999999999999999999999999999999999999999999999987
Q ss_pred ecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHHHH
Q 008389 487 ADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKE 558 (567)
Q Consensus 487 ~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~ 558 (567)
.. ..+++++++++...+. .... ++++++++++||.|++|..+++++ +|+|++||++|++|++...+
T Consensus 3528 ~~-~~~~~lva~v~~~~~~-~~~~----~~l~~~l~~~Lp~y~vP~~~~~l~~lP~t~~GKidR~~L~~~~~~ 3594 (3956)
T PRK12467 3528 DG-AGGKQLVAYVVPADPQ-GDWR----ETLRDHLAASLPDYMVPAQLLVLAAMPLGPNGKVDRKALPDPDAK 3594 (3956)
T ss_pred cC-CCCcEEEEEEeCCCCC-cccH----HHHHHHHhccCChhhCCCeeeeeccCCCCCCCccchhhcCCCCcc
Confidence 54 3578999999977653 2233 688999999999999999999888 99999999999999876543
|
|
| >PTZ00216 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-64 Score=541.47 Aligned_cols=510 Identities=19% Similarity=0.266 Sum_probs=386.6
Q ss_pred ccCHHHHHhhhhhcCCCceeEEEC---------------------------CccccHHHHHHHHHHHHHHHHHccCCCCC
Q 008389 19 ALTPLWFLDRAATVHPTRTSVVHG---------------------------STRYTWLQTYQRCRRLASALCKRSIGLGC 71 (567)
Q Consensus 19 ~~t~~~~l~~~a~~~p~~~a~~~~---------------------------~~~~Ty~el~~~~~~lA~~L~~~g~~~gd 71 (567)
..|+.++|.++++.+||++|+.+. .+++||+||.++++++|..|.++|+++||
T Consensus 68 ~~t~~~~~~~~~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lTy~el~~~~~~lA~~L~~~Gv~~gd 147 (700)
T PTZ00216 68 GPNFLQRLERICKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRYITYAELWERIVNFGRGLAELGLTKGS 147 (700)
T ss_pred CCCHHHHHHHHHHhCCCCCeEEEeccccccccccccCCCccccccccccCCceEeEHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 468999999999999999999983 37899999999999999999999999999
Q ss_pred EEEEEcCChHHHHHHHHhhhhcCCeeeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeE
Q 008389 72 TVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLL 151 (567)
Q Consensus 72 ~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (567)
+|+|+++|+++|++++|||+++|++++|+++.++.+++.+++++++++++|++.+....+........ .....+
T Consensus 148 ~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~~~~~~~~l~~~~~~~~------~~~~~i 221 (700)
T PTZ00216 148 NVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNGKNVPNLLRLMKSGG------MPNTTI 221 (700)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEECHHHHHHHHHhhhhcc------CCceEE
Confidence 99999999999999999999999999999999999999999999999999998765544333222110 012345
Q ss_pred EEecCCCCCcccchhccCCChHHHHHHHhcCC---CCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHH
Q 008389 152 IVIGDESCDPKDLKYALGRGAVEYEKFLQTGD---PQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVA 228 (567)
Q Consensus 152 i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~ 228 (567)
+.++...... ........+|++++..+. .......+..++++++++|||||||.||||.+||+++.+++....
T Consensus 222 i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~nl~~~~~~~~ 297 (700)
T PTZ00216 222 IYLDSLPASV----DTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAGILALE 297 (700)
T ss_pred EEECCCcccc----ccCCceEEEHHHHHHhCCccccccccCCCCCcccEEEEEEeCCCCCcCcEEEEEhHHHHHHHHHHH
Confidence 5554321110 011223456777766542 111112334678999999999999999999999999998877665
Q ss_pred HHh----c-cCCCcEEEEecCccchhhhHHHHHHhhhcCeeEEeccCCHHHHHH-------HHHhhCceEeeeCcHHHHH
Q 008389 229 LIW----G-MNEGAVYLWTLPMFHCNGWCYTWSLAALCGTSICLRQVTAKAVYS-------AIAKYGVTHFCAAPVVLNS 296 (567)
Q Consensus 229 ~~~----~-~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~-------~i~~~~~t~l~~~p~~~~~ 296 (567)
..+ + +.++|++++.+|++|.+++......+..|+ .+.+. ++..+.+ .+++++||++.++|.+++.
T Consensus 298 ~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~-~v~~~--~~~~l~~~~~~~~~~l~~~~pT~~~~vP~~~~~ 374 (700)
T PTZ00216 298 DRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGA-LIGFG--SPRTLTDTFARPHGDLTEFRPVFLIGVPRIFDT 374 (700)
T ss_pred hhcccccCCCCCCCEEEEEChHHHHHHHHHHHHHHHcCC-EEEEC--CHHHhhhhhccccchHHHcCCcEEEechHHHHH
Confidence 443 2 467899999999999999876554444454 44442 4555554 6889999999999999988
Q ss_pred HHcCCCC-------------------------CC---------------cCCCCchhhhhccCCCCCHHHHHHHHhc-CC
Q 008389 297 IVNAPSE-------------------------DT---------------ILPLPHVVHVNTAGAAPPPSVLHAMSQK-GF 335 (567)
Q Consensus 297 l~~~~~~-------------------------~~---------------~~~l~~lr~i~~~G~~l~~~~~~~~~~~-~~ 335 (567)
+.+.... .. ....+++|.+++||+++++++.++++.. +
T Consensus 375 l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~lr~i~~GGa~l~~~~~~~~~~~~~- 453 (700)
T PTZ00216 375 IKKAVEAKLPPVGSLKRRVFDHAYQSRLRALKEGKDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVFG- 453 (700)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHHHHHhh-
Confidence 7642100 00 0001578999999999999999888754 6
Q ss_pred eeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCC-ccCCCCCceEEEEEecccccc
Q 008389 336 HVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQ-PVPADGKTIGEIVMSGNVVMK 414 (567)
Q Consensus 336 ~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~-~~~~~~~~~Gei~v~~~~~~~ 414 (567)
++++.||+||+++.++..... ....+++|.|++++ +++|+|.+... ..+++ +.|||+|+|++++.
T Consensus 454 ~l~~~YG~TEt~~~~~~~~~~-----------~~~~~svG~p~~g~-evkI~d~~~~~~~~~~~--~~GEL~vrG~~v~~ 519 (700)
T PTZ00216 454 MVIQGWGLTETVCCGGIQRTG-----------DLEPNAVGQLLKGV-EMKLLDTEEYKHTDTPE--PRGEILLRGPFLFK 519 (700)
T ss_pred hHhhccCcccccccccccCCC-----------CCCCCCcCCcCCCe-EEEEeechhhccCCCCC--CCceEEEcCCcccc
Confidence 999999999997655432211 12347899999999 89999976321 22333 56999999999999
Q ss_pred cccCCCccchhcc-cCCccccCceEEEeCCCcEEEeccccceee-eCceecchHHHHHHHhcCCCceee--EEEEeecCC
Q 008389 415 GYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIII-SGGENISSVEVENMMYLHPAVLEA--SVVARADER 490 (567)
Q Consensus 415 gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~-~~G~~v~~~~iE~~l~~~~~i~~~--~v~~~~~~~ 490 (567)
|||++++.+.+.| .+|||+|||+|++++||+++++||.||+|| .+|++|+|.+||+++.++|.|.++ +|++.++
T Consensus 520 GY~~~pe~T~~~f~~dGw~~TGDig~~d~dG~l~i~GR~kd~ik~~~G~~I~p~eIE~~l~~~p~V~~~~~~v~~~~~-- 597 (700)
T PTZ00216 520 GYYKQEELTREVLDEDGWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEALYGQNELVVPNGVCVLVHPA-- 597 (700)
T ss_pred hhcCChhHhhhhccccCCeeccceEEEcCCCcEEEEEehHhheecCCCceeccHHHHHHHhcCcCcccceEEEEEecC--
Confidence 9999999999999 589999999999999999999999999999 999999999999999999999973 3333332
Q ss_pred CCCcceEEEEEcCCcc-----------c----hhh----HHHHHHHHHHHH-hcCCCCCCCceeecCc--c-c----CCC
Q 008389 491 WGESPCAFVTLKPEVD-----------K----SNE----QQLAEDIMKFCR-AKMPAYWVPKSIVFGP--L-P----KTA 543 (567)
Q Consensus 491 ~g~~~~~~v~~~~~~~-----------~----~~~----~~~~~~l~~~l~-~~l~~~~~p~~i~~~~--l-P----~t~ 543 (567)
...++++|++..+.- . .+. +.+.+++.+..+ +.+..+..++.|.+.+ + + .|+
T Consensus 598 -~~~l~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~~~~~~f~~~~g~lT~ 676 (700)
T PTZ00216 598 -RSYICALVLTDEAKAMAFAKEHGIEGEYPAILKDPEFQKKATESLQETARAAGRKSFEIVRHVRVLSDEWTPENGVLTA 676 (700)
T ss_pred -CceEEEEEecCHHHHHHHHHHcCCCCCHHHHhcCHHHHHHHHHHHHHHHHhcCCCCceeEeEEEEECCCCCCCCCCCCh
Confidence 245888888753210 0 001 122233333332 4688899999888754 2 2 699
Q ss_pred CccccHHHHHHHHHHc
Q 008389 544 TGKIQKHVLRAKAKEM 559 (567)
Q Consensus 544 ~GKi~r~~l~~~~~~~ 559 (567)
++|++|+++++.|++.
T Consensus 677 t~K~~R~~i~~~y~~~ 692 (700)
T PTZ00216 677 AMKLKRRVIDERYADL 692 (700)
T ss_pred hhccchHHHHHHHHHH
Confidence 9999999999998864
|
|
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-64 Score=579.73 Aligned_cols=493 Identities=18% Similarity=0.221 Sum_probs=410.4
Q ss_pred hhhcccCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcC
Q 008389 15 ANYMALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAG 94 (567)
Q Consensus 15 ~~~~~~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G 94 (567)
...+..|+.++|.++++++|+++|+++.++++||+||.+++.++|+.|.+.|+++||+|++++++++++++++|||+++|
T Consensus 453 ~~~~~~~l~~~~~~~~~~~p~~~Al~~~~~~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l~~~~~~~~i~~~la~~~~G 532 (1296)
T PRK10252 453 VEIPETTLSALVAQQAAKTPDAPALADARYQFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHAIVEAG 532 (1296)
T ss_pred CCCCcCCHHHHHHHHHHhCCCCeEEEcCCCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhC
Confidence 34556799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHH
Q 008389 95 AVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVE 174 (567)
Q Consensus 95 ~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 174 (567)
++++|+++.++.+++.++++.+++++++++.+....+... ....+..+...
T Consensus 533 ~~~vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~~~------------~~~~~~~~~~~----------------- 583 (1296)
T PRK10252 533 AAWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFADV------------PDLTSLCYNAP----------------- 583 (1296)
T ss_pred CEEEecCccCHHHHHHHHHHhCCCCEEEECcchhhhcccC------------CCceeeecccc-----------------
Confidence 9999999999999999999999999999987654432210 00111111110
Q ss_pred HHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhhHHH
Q 008389 175 YEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYT 254 (567)
Q Consensus 175 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~ 254 (567)
.... .........++++++++|||||||.||||.++|+++.+.+.+....++++++|++++..|++|..++...
T Consensus 584 ----~~~~--~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~ 657 (1296)
T PRK10252 584 ----LAPQ--GAAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHYPLTADDVVLQKTPCSFDVSVWEF 657 (1296)
T ss_pred ----cccc--cCCCCCCCCCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEeCCcchhhhHHHH
Confidence 0000 0011112356789999999999999999999999999999988889999999999999999998888888
Q ss_pred HHHhhhcCeeEEec---cCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCc-CCCCchhhhhccCCCCCHHHHHHH
Q 008389 255 WSLAALCGTSICLR---QVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTI-LPLPHVVHVNTAGAAPPPSVLHAM 330 (567)
Q Consensus 255 ~~~~~~g~~~~~~~---~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~-~~l~~lr~i~~~G~~l~~~~~~~~ 330 (567)
+..+..|+++++.+ ..++..+.+.|+++++|++.++|+++..+++....... ..++++|.+++|||++++++.+.+
T Consensus 658 ~~~l~~G~~l~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~ 737 (1296)
T PRK10252 658 FWPFIAGAKLVMAEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEGARQSCASLRQVFCSGEALPADLCREW 737 (1296)
T ss_pred HHHHhCCCEEEECChhccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhccccccccCCCccEEEEecCCCCHHHHHHH
Confidence 88888999988875 35889999999999999999999999999876433321 126789999999999999999999
Q ss_pred Hhc-CCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEec
Q 008389 331 SQK-GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSG 409 (567)
Q Consensus 331 ~~~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~ 409 (567)
.+. ++++++.||+||++..++......... ..........|.|++++ .+.|+|+. +++++.| +.|||+++|
T Consensus 738 ~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~----~~~~~~~~~iG~p~~~~-~~~i~d~~-~~~~~~g--~~Gel~i~g 809 (1296)
T PRK10252 738 QQLTGAPLHNLYGPTEAAVDVSWYPAFGEEL----AAVRGSSVPIGYPVWNT-GLRILDAR-MRPVPPG--VAGDLYLTG 809 (1296)
T ss_pred HhcCCCEEEeCCCcchhhheeeeeecccccc----cccCCCCCCcccccCCC-EEEEECCC-CCCCCCC--CceEEEecc
Confidence 865 889999999999976655433221110 00011235789999999 89999976 8999998 889999999
Q ss_pred ccccccccCCCccchhccc-------CCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeE
Q 008389 410 NVVMKGYLKNPKANEETFA-------NGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEAS 482 (567)
Q Consensus 410 ~~~~~gy~~~~~~~~~~~~-------~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~ 482 (567)
+.++.||+++++.+...|. ++||+|||+|++++||.++++||.||+||++|.+|++.|||.+|.++|+|.+++
T Consensus 810 ~~~~~GY~~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~~G~l~~~GR~d~~ik~~G~ri~~~eIE~~l~~~~~v~~a~ 889 (1296)
T PRK10252 810 IQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARWLDDGAVEYLGRSDDQLKIRGQRIELGEIDRAMQALPDVEQAV 889 (1296)
T ss_pred cccchhhCCCcccchhhcccCCCCCCCEEEecCceEEEcCCCcEEEecccCCeEEEeeEEecHHHHHHHHHhCccccceE
Confidence 9999999999999988882 349999999999999999999999999999999999999999999999999998
Q ss_pred EEEee----cCCCC--CcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHH
Q 008389 483 VVARA----DERWG--ESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAK 555 (567)
Q Consensus 483 v~~~~----~~~~g--~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~ 555 (567)
|++.. +...| ..++++++...+. ..+. ++++++++++||.|++|..+++++ +|+|++||++|++|++.
T Consensus 890 v~~~~~~~~~~~~~~~~~lva~v~~~~~~-~~~~----~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~~GKidr~~L~~~ 964 (1296)
T PRK10252 890 THACVINQAAATGGDARQLVGYLVSQSGL-PLDT----SALQAQLRERLPPHMVPVVLLQLDQLPLSANGKLDRKALPLP 964 (1296)
T ss_pred EEEEeccccccCCCCccEEEEEEEcCCCC-CCCH----HHHHHHHHhhCchhcCCcEEEEecCCCCCCCcChhHHhcCCC
Confidence 77553 11122 3689999877654 3344 678899999999999999999887 99999999999999764
|
|
| >TIGR02262 benz_CoA_lig benzoate-CoA ligase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-63 Score=518.12 Aligned_cols=495 Identities=26% Similarity=0.344 Sum_probs=409.9
Q ss_pred HHHHhhh-hhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCeeeecc
Q 008389 23 LWFLDRA-ATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVN 101 (567)
Q Consensus 23 ~~~l~~~-a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~ 101 (567)
.+++++. ++.+||++|+++.+..+||.||.++++++|+.|.+.|+++|++|+++++|+.+++++++||+++|++++|++
T Consensus 7 ~~~~~~~~~~~~p~~~a~~~~~~~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l~~~~~~~~~~~~~a~~~~G~~~v~l~ 86 (508)
T TIGR02262 7 EDLLDRNVVEGRGGKTAFIDDISSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVALN 86 (508)
T ss_pred HHHHHHHHhcccCCceEEEeCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEeecc
Confidence 4566665 677999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHHHHHHhc
Q 008389 102 IRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQT 181 (567)
Q Consensus 102 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 181 (567)
+.++.+++.++++.+++++++++.+..+.+.+....++ ....++.++... .....+.++...
T Consensus 87 ~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~-----------~~~~~~~~~~~~ 148 (508)
T TIGR02262 87 TLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKSP-------HLEHRVVVGRPE-----------AGEVQLAELLAT 148 (508)
T ss_pred CCCCHHHHHHHHHhcCCeEEEEchhhHHHHHHHHhcCC-------CccEEEEeCCCC-----------cccccHHHHhhc
Confidence 99999999999999999999999887666555433222 334444443321 111233444433
Q ss_pred CCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHH-HHHHhccCCCcEEEEecCccchhhhHHHHH-Hhh
Q 008389 182 GDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLS-VALIWGMNEGAVYLWTLPMFHCNGWCYTWS-LAA 259 (567)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~-~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~-~~~ 259 (567)
...... .....++++++++|||||||.||+|.++|+++...+.. ....++++++|+++...|++|.+++...+. .+.
T Consensus 149 ~~~~~~-~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~ 227 (508)
T TIGR02262 149 ESEQFK-PAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLGIREDDVVFSAAKLFFAYGLGNALTFPMS 227 (508)
T ss_pred CCCccC-CCCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhcCCCCCCEEEEcCchHHHHHHHHHHHHHHH
Confidence 222211 12345688999999999999999999999999887765 445678899999999999999999865444 455
Q ss_pred hcCeeEEec-cCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHHHh-cCCee
Q 008389 260 LCGTSICLR-QVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQ-KGFHV 337 (567)
Q Consensus 260 ~g~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~-~~~~i 337 (567)
.|++.++.+ .+++..+++.|+++++|.+.++|+++..++......... ..++|.++++|+++++++.+.|.+ +++++
T Consensus 228 ~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~~~~~~-~~~l~~~~~~G~~l~~~~~~~~~~~~~~~v 306 (508)
T TIGR02262 228 VGATTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPNLPAED-QVRLRLCTSAGEALPAEVGQRWQARFGVDI 306 (508)
T ss_pred cCceEEEeCCCCCHHHHHHHHHHHCCcEEecchHHHHHHhcCccccccc-cccceeEEEcCCCCCHHHHHHHHHHhCCch
Confidence 677666664 368999999999999999999999998887654332223 678999999999999999999885 58999
Q ss_pred eeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEeccccccccc
Q 008389 338 THTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYL 417 (567)
Q Consensus 338 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~~gy~ 417 (567)
++.||+||++.++..+... ....+.+|.|++++ .++|+|. ++.+++.+ +.|||+++|+.++.||+
T Consensus 307 ~~~YG~tE~~~~~~~~~~~-----------~~~~~~~G~~~~g~-~v~i~d~-~~~~~~~g--~~Gel~i~~~~~~~gY~ 371 (508)
T TIGR02262 307 VDGIGSTEMLHIFLSNLPG-----------DVRYGTSGKPVPGY-RLRLVGD-GGQDVAAG--EPGELLISGPSSATMYW 371 (508)
T ss_pred hhCccccccCceeecCCcc-----------CCCCCCcCCCCCCc-EEEEECC-CCCCCCCC--CeeEEEEecCccccccC
Confidence 9999999998755543211 01236789999999 8999994 58999888 78999999999999999
Q ss_pred CCCccchhcccCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeecCCCCCcceE
Q 008389 418 KNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCA 497 (567)
Q Consensus 418 ~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~ 497 (567)
++++.+...|.++||+|||+++++++|.+++.||.+|+|+.+|.++++.+||+.+.++++|.++++++.++...++++.+
T Consensus 372 ~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~gR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~~ 451 (508)
T TIGR02262 372 NNRAKTRDTFQGEWTRSGDKYVRNDDGSYTYAGRTDDMLKVSGIYVSPFEIESALIQHPAVLEAAVVGVEDEDGLIKPKA 451 (508)
T ss_pred CCHHHhHhhhhcCceeccceEEEcCCccEEEeccccceeeeCCEEECHHHHHHHHHhCCCeeEEEEEeccccCCCceeEE
Confidence 99999988899999999999999999999999999999999999999999999999999999999999888777788899
Q ss_pred EEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHH
Q 008389 498 FVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRA 554 (567)
Q Consensus 498 ~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~ 554 (567)
++++.++... .+...+++.+.++++|+.++.|..+.+++ +|+|++||++|+.|++
T Consensus 452 ~v~~~~~~~~--~~~~~~~i~~~~~~~l~~~~~p~~i~~~~~iP~t~~gKi~r~~l~~ 507 (508)
T TIGR02262 452 FIVLRPGQDI--DTALETELKEHVKDRLAPYKYPRWIVFVDDLPKTATGKIQRFKLRE 507 (508)
T ss_pred EEEeCCCCcc--ccccHHHHHHHHHHhcccCCCCceEEEecCCCCCCCCcEehhhccC
Confidence 9988766422 12233788999999999999999998877 9999999999999875
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. |
| >PRK07798 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-63 Score=519.84 Aligned_cols=503 Identities=27% Similarity=0.361 Sum_probs=408.1
Q ss_pred ccCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCeee
Q 008389 19 ALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLN 98 (567)
Q Consensus 19 ~~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v 98 (567)
++|+.++|++.++++|+++|+.+.++.+||.||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|++++
T Consensus 2 ~~~l~~~~~~~a~~~p~~~a~~~~~~~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~~~~G~~~v 81 (533)
T PRK07798 2 AWNIADLFEAVADAVPDRVALVCGDRRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPV 81 (533)
T ss_pred cccHHHHHHHHHHhCCCceEEEECCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCeEEE
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHHHHH
Q 008389 99 AVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKF 178 (567)
Q Consensus 99 ~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (567)
|+++.++.+++.++++.+++++++++....+.+.+...... ....++.++...... ...+..+++++
T Consensus 82 ~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~------~~~~~~~~~~~ 148 (533)
T PRK07798 82 NVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPRLP-------KLRTLVVVEDGSGND------LLPGAVDYEDA 148 (533)
T ss_pred ecCcCCCHHHHHHHHhhcCCCEEEEchhhHHHHHHHhccCC-------CccEEEEecCCcccc------cCCccccHHHH
Confidence 99999999999999999999999999877666554422221 344555555432111 11134466776
Q ss_pred HhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHH---------hcc------CCCcEEEEec
Q 008389 179 LQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALI---------WGM------NEGAVYLWTL 243 (567)
Q Consensus 179 l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~---------~~~------~~~d~~~~~~ 243 (567)
+........ ......+.++++|||||||.||+|+++|+++.......... ..+ ..+++++...
T Consensus 149 ~~~~~~~~~--~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (533)
T PRK07798 149 LAAGSPERD--FGERSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAP 226 (533)
T ss_pred HhccCCcCC--CCCCCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEec
Confidence 655432211 11223455789999999999999999999987654432221 112 5678999999
Q ss_pred CccchhhhHHHHHHhhhcCeeEEec--cCCHHHHHHHHHhhCceEeeeCcHHHHH-HHcCCC-CCCcCCCCchhhhhccC
Q 008389 244 PMFHCNGWCYTWSLAALCGTSICLR--QVTAKAVYSAIAKYGVTHFCAAPVVLNS-IVNAPS-EDTILPLPHVVHVNTAG 319 (567)
Q Consensus 244 p~~~~~g~~~~~~~~~~g~~~~~~~--~~~~~~~~~~i~~~~~t~l~~~p~~~~~-l~~~~~-~~~~~~l~~lr~i~~~G 319 (567)
|++|..++...+.++..|+++++.+ .+++..+++.++++++|.+..+|..+.. +..... ..... ++++|.+++||
T Consensus 227 pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~-~~~l~~i~~gG 305 (533)
T PRK07798 227 PLMHGAGQWAAFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALEARGPYD-LSSLFAIASGG 305 (533)
T ss_pred chhhhhhHHHHHHHHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhcccccCC-CCceEEEEECC
Confidence 9999999988888888999999887 7899999999999999999999876543 333222 22223 78999999999
Q ss_pred CCCCHHHHHHHHhc--CCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCC--ceeccccceeEeeCCCCCcc
Q 008389 320 AAPPPSVLHAMSQK--GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQG--VRFIGLEKLDVIDTRTQQPV 395 (567)
Q Consensus 320 ~~l~~~~~~~~~~~--~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G--~~~~~~~~~~i~d~~~~~~~ 395 (567)
+++++++.+++.+. +..+++.||+||++.+........ ....| .+.++. .++|+|++ ++++
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~-------------~~~~g~~~~~~~~-~~~i~~~~-~~~~ 370 (533)
T PRK07798 306 ALFSPSVKEALLELLPNVVLTDSIGSSETGFGGSGTVAKG-------------AVHTGGPRFTIGP-RTVVLDED-GNPV 370 (533)
T ss_pred CCCCHHHHHHHHHHcCCCeEEeeecccccccccccCCCCC-------------CccCCCCccCCCc-eEEEECCC-CCCC
Confidence 99999999999854 789999999999865444321100 01222 567777 79999987 7788
Q ss_pred CCCCCceEEEEEecccccccccCCCccchhccc----CCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHH
Q 008389 396 PADGKTIGEIVMSGNVVMKGYLKNPKANEETFA----NGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENM 471 (567)
Q Consensus 396 ~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~----~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~ 471 (567)
+.+....|+++ +++.++.||++++..+...|. ++||+|||+|+++++|.+++.||.+|+|+.+|.+|++.+||.+
T Consensus 371 ~~g~~~~g~l~-~~~~~~~gy~~~~~~t~~~f~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~~~i~~~G~~v~~~eIE~~ 449 (533)
T PRK07798 371 EPGSGEIGWIA-RRGHIPLGYYKDPEKTAETFPTIDGVRYAIPGDRARVEADGTITLLGRGSVCINTGGEKVFPEEVEEA 449 (533)
T ss_pred CCCCCCeeEEE-eecCccccccCChhhhHHhhccCCCCceEEcCcEEEEcCCCcEEEEccccceEecCCEEeCHHHHHHH
Confidence 88743236665 566899999999998888773 3599999999999999999999999999999999999999999
Q ss_pred HhcCCCceeeEEEEeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHH
Q 008389 472 MYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKH 550 (567)
Q Consensus 472 l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~ 550 (567)
+.+++.|.+++|++.++...|+.+.+++++.++. ..+. ++++++++++|+.+++|..+++++ +|+|.+||++|+
T Consensus 450 l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~-~~~~----~~l~~~l~~~l~~~~~P~~i~~~~~iP~t~~GK~~~~ 524 (533)
T PRK07798 450 LKAHPDVADALVVGVPDERWGQEVVAVVQLREGA-RPDL----AELRAHCRSSLAGYKVPRAIWFVDEVQRSPAGKADYR 524 (533)
T ss_pred HHhCccceeEEEEeccCcccCceEEEEEEECCCC-CCCH----HHHHHHHhhhcccCCCCeEEEEcccCCCCCcchhhHH
Confidence 9999999999999999888888899999887664 3444 788899999999999999999887 999999999999
Q ss_pred HHHHHHHH
Q 008389 551 VLRAKAKE 558 (567)
Q Consensus 551 ~l~~~~~~ 558 (567)
.|+++..+
T Consensus 525 ~~~~~~~~ 532 (533)
T PRK07798 525 WAKEQAAE 532 (533)
T ss_pred HHhhhhcc
Confidence 99999875
|
|
| >PRK08180 feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-63 Score=530.41 Aligned_cols=496 Identities=17% Similarity=0.168 Sum_probs=383.2
Q ss_pred hhcccCHHHHHhhhhhcCCCceeEEECC-----ccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhh
Q 008389 16 NYMALTPLWFLDRAATVHPTRTSVVHGS-----TRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGV 90 (567)
Q Consensus 16 ~~~~~t~~~~l~~~a~~~p~~~a~~~~~-----~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~ 90 (567)
...+.|+.++|++++.++|+++|+++.+ +++||+||.++++++|+.|.+.|+++||+|+++++|++++++++|||
T Consensus 35 ~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~ 114 (614)
T PRK08180 35 GDYPRRLTDRLVHWAQEAPDRVFLAERGADGGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLALAA 114 (614)
T ss_pred CCcCccHHHHHHHHHHHCCCCceeeeccCCCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHH
Confidence 3446799999999999999999998752 68999999999999999999999999999999999999999999999
Q ss_pred hhcCCeeeeccccCC-----hHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccch
Q 008389 91 PMAGAVLNAVNIRLN-----APTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLK 165 (567)
Q Consensus 91 ~~~G~~~v~i~~~~~-----~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 165 (567)
+++|++++|+++.++ .+++.++++.++++++|++.... +......... ....++.......
T Consensus 115 ~~~Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~--~~~~~~~~~~------~~~~~i~~~~~~~------ 180 (614)
T PRK08180 115 MYAGVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAA--FARALAAVVP------ADVEVVAVRGAVP------ 180 (614)
T ss_pred HHcCCeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHH--HHHHHhhhcc------CCceEEEecCCCC------
Confidence 999999999999988 79999999999999999976421 1111111110 1122333322110
Q ss_pred hccCCChHHHHHHHhcCCCCC--CCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccC--CCcEEEE
Q 008389 166 YALGRGAVEYEKFLQTGDPQF--DWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMN--EGAVYLW 241 (567)
Q Consensus 166 ~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~--~~d~~~~ 241 (567)
.....++.+++....... .......++++++|+|||||||.||||.+||+++..+.......++.. .++++++
T Consensus 181 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~ 257 (614)
T PRK08180 181 ---GRAATPFAALLATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEEPPVLVD 257 (614)
T ss_pred ---CcccccHHHHhccccccchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhccccCCCCcEEEE
Confidence 011244566554322111 111224568999999999999999999999999998887777666653 5689999
Q ss_pred ecCccchhhhHHHH-HHhhhcCeeEEec-cCC---HHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCC----CcCCCCch
Q 008389 242 TLPMFHCNGWCYTW-SLAALCGTSICLR-QVT---AKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSED----TILPLPHV 312 (567)
Q Consensus 242 ~~p~~~~~g~~~~~-~~~~~g~~~~~~~-~~~---~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~----~~~~l~~l 312 (567)
.+|++|.+|+...+ .++..|+++++.+ .++ ...+++.++++++|+++++|+++..|++..... ... ++++
T Consensus 258 ~lPl~h~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~-~~~l 336 (614)
T PRK08180 258 WLPWNHTFGGNHNLGIVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDAALRRRF-FSRL 336 (614)
T ss_pred ecchHHHhhHHHHHHHHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhchhhhhhh-ccce
Confidence 99999999986544 4556677776654 233 357889999999999999999999998643221 122 6899
Q ss_pred hhhhccCCCCCHHHHHHHHhc-------CCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceecccccee
Q 008389 313 VHVNTAGAAPPPSVLHAMSQK-------GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLD 385 (567)
Q Consensus 313 r~i~~~G~~l~~~~~~~~~~~-------~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~ 385 (567)
|.+++||+++++++.+++.+. ++++++.||+||++++++..... ....+++|.|+|++ +++
T Consensus 337 r~v~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~-----------~~~~~svG~p~pg~-~v~ 404 (614)
T PRK08180 337 KLLFYAGAALSQDVWDRLDRVAEATCGERIRMMTGLGMTETAPSATFTTGP-----------LSRAGNIGLPAPGC-EVK 404 (614)
T ss_pred eEEEEccCCCCHHHHHHHHHHHHhhcCCCceeeeeecccccCCceEecccc-----------cCCCCcccCccCCc-EEE
Confidence 999999999999999998852 37899999999997665543211 12347899999999 899
Q ss_pred EeeCCCCCccCCCCCceEEEEEecccccccccCCCccchhcc-cCCccccCceEEE----eCCCcEEEeccccceee-eC
Q 008389 386 VIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETF-ANGWYHTGDLGVK----HPDNYIEIKDRSKDIII-SG 459 (567)
Q Consensus 386 i~d~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~----~~~g~l~~~GR~~d~i~-~~ 459 (567)
|+|+. ..|||+++|++++.||+++++.+...| .+|||+|||+|++ +++|++++.||.+|+|+ .+
T Consensus 405 i~d~~----------~~GEi~vrg~~v~~GY~~~p~~t~~~~~~dgw~~TGDlg~~~~~~d~~g~l~i~GR~~d~i~~~~ 474 (614)
T PRK08180 405 LVPVG----------GKLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYRSGDAVRFVDPADPERGLMFDGRIAEDFKLSS 474 (614)
T ss_pred EecCC----------CCcEEEEecCccchhhcCChhHhHhhcccCCceeccceEEecCCcCCCCceEEecchhhhEEcCC
Confidence 98853 469999999999999999999998888 4899999999999 46899999999999888 68
Q ss_pred ceecc--hHHHHHHHhcCCCceeeEEEEeecCCCCCcceEEEEEcCCcc--------------chhhHHHHHHHHHHHHh
Q 008389 460 GENIS--SVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVD--------------KSNEQQLAEDIMKFCRA 523 (567)
Q Consensus 460 G~~v~--~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~--------------~~~~~~~~~~l~~~l~~ 523 (567)
|++++ +.|+|..+.++|.|.+++|++.+++. +.++|+++++.. ..+. +++++++++
T Consensus 475 G~~i~~~p~Eie~~l~~~p~V~~a~V~g~~~~~----~~a~V~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~ 546 (614)
T PRK08180 475 GTWVSVGPLRARAVSAGAPLVQDVVITGHDRDE----IGLLVFPNLDACRRLAGLLADASLAEVLAH----PAVRAAFRE 546 (614)
T ss_pred CcEecchhhhHHHHhhcCchhheEEEEcCCCCc----eEEEEEcCHHHHHHHHhhcccCCHHHHhcC----HHHHHHHHH
Confidence 98777 77888999999999999999998764 778888776520 0122 344555554
Q ss_pred cCCCCC--------CCceeecCc-ccCC------CCccccHHHHHHHHHHc
Q 008389 524 KMPAYW--------VPKSIVFGP-LPKT------ATGKIQKHVLRAKAKEM 559 (567)
Q Consensus 524 ~l~~~~--------~p~~i~~~~-lP~t------~~GKi~r~~l~~~~~~~ 559 (567)
.|..+. +|+++.+++ +|++ ++||++|+++.+.|.+.
T Consensus 547 ~l~~~~~~~~~~~~~p~~~~~~~~~p~~~~gk~t~~~~~~R~~~~~~y~~~ 597 (614)
T PRK08180 547 RLARLNAQATGSSTRVARALLLDEPPSLDAGEITDKGYINQRAVLARRAAL 597 (614)
T ss_pred HHHHHHhhccccHhheeEEEEecCCCCCccCccCccccccHHHHHHHhHHH
Confidence 444443 899999877 8865 45688999998888764
|
|
| >PRK13390 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-63 Score=514.46 Aligned_cols=482 Identities=26% Similarity=0.410 Sum_probs=388.0
Q ss_pred hhhhcCCCceeEEEC--CccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCeeeeccccCC
Q 008389 28 RAATVHPTRTSVVHG--STRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLN 105 (567)
Q Consensus 28 ~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~ 105 (567)
.++.++|+++|+.+. ++++||+||.++++++|+.|.+.|+.+||+|+++++|++++++++|||+++|++++|+++.++
T Consensus 5 ~~a~~~p~~~a~~~~~~~~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~~l~~~~~ 84 (501)
T PRK13390 5 THAQIAPDRPAVIVAETGEQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYITAINHHLT 84 (501)
T ss_pred hhhhhCCCCcEEEecCCCeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEeccccCCC
Confidence 467789999999874 589999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHHHHHHhcCCCC
Q 008389 106 APTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQ 185 (567)
Q Consensus 106 ~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 185 (567)
.+++.++++.+++++++++.......... .. .....+.+.... .....+++......+.
T Consensus 85 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----~~------~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~ 143 (501)
T PRK13390 85 APEADYIVGDSGARVLVASAALDGLAAKV----GA------DLPLRLSFGGEI-----------DGFGSFEAALAGAGPR 143 (501)
T ss_pred HHHHHHHHHhcCCcEEEEcchhhhHHHHh----hh------ccceEEEecCcc-----------cccccHHHHhcccCCC
Confidence 99999999999999999987543322211 10 111112222110 0112233332221111
Q ss_pred CCCCCCCCcCceEEEEecCCCCCCCCeeee--ccHHHHHHH----HHHHHHhccCCCcEEEEecCccchhhhHHHHHHhh
Q 008389 186 FDWKPPQDEWQSIALGYTSGTTASPKGVVL--SHRGAYLMS----LSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAA 259 (567)
Q Consensus 186 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~--t~~~l~~~~----~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~ 259 (567)
..+.++.++|+|||||||.||+|.+ +|.++.... ......+++..+++++..+|++|..++...+..+.
T Consensus 144 -----~~~~~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~~~~~~~~~ 218 (501)
T PRK13390 144 -----LTEQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFYDISESDIYYSSAPIYHAAPLRWCSMVHA 218 (501)
T ss_pred -----CCCCcccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHhCCCCCCeEEecccchhhhHHHHHHHHHh
Confidence 1122357999999999999999996 455544322 11233567889999999999999998876666667
Q ss_pred hcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCC--CCcCCCCchhhhhccCCCCCHHHHHHHHh-cCCe
Q 008389 260 LCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSE--DTILPLPHVVHVNTAGAAPPPSVLHAMSQ-KGFH 336 (567)
Q Consensus 260 ~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~--~~~~~l~~lr~i~~~G~~l~~~~~~~~~~-~~~~ 336 (567)
.|+++++...+++..+++.|+++++|.+.++|+++..+.+.... .... ++++|.++.+|+++++++.+.+.+ ++.+
T Consensus 219 ~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~-~~~l~~v~~~g~~~~~~~~~~~~~~~~~~ 297 (501)
T PRK13390 219 LGGTVVLAKRFDAQATLGHVERYRITVTQMVPTMFVRLLKLDADVRTRYD-VSSLRAVIHAAAPCPVDVKHAMIDWLGPI 297 (501)
T ss_pred cCceEEEcCCcCHHHHHHHHHHcCCeEEEecHHHHHHHHhccchhcccCC-hhhhheEEEcCCCCCHHHHHHHHHhcCCc
Confidence 78888877778999999999999999999999999998865432 1223 778999999999999999999885 4889
Q ss_pred eeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEecccccccc
Q 008389 337 VTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGY 416 (567)
Q Consensus 337 i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~~gy 416 (567)
+++.||+||+++++.... . ......+.+|.|+++. ++|+|.+ +++++.| +.|||+++|++++.||
T Consensus 298 ~~~~YG~tE~~~~~~~~~--~--------~~~~~~~~~G~~~~g~--~~i~d~~-~~~~~~g--~~Gel~v~~~~~~~gy 362 (501)
T PRK13390 298 VYEYYSSTEAHGMTFIDS--P--------DWLAHPGSVGRSVLGD--LHICDDD-GNELPAG--RIGTVYFERDRLPFRY 362 (501)
T ss_pred eeeeecccccCceEEecc--h--------hhccCCCCcCCcccce--EEEECCC-CCCCCCC--CceEEEEecCCccccc
Confidence 999999999976543211 0 1112346789999983 8889875 8889888 8999999999999999
Q ss_pred cCCCccchhccc---CCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeecCCCCC
Q 008389 417 LKNPKANEETFA---NGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGE 493 (567)
Q Consensus 417 ~~~~~~~~~~~~---~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~ 493 (567)
+++++.+...|. ++|++|||+|+++++|++++.||.+|+|+.+|.+|+|.+||+++.+++.|.+++|++.++...++
T Consensus 363 ~~~~~~t~~~~~~~~~~w~~tGDl~~~~~dg~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~~e 442 (501)
T PRK13390 363 LNDPEKTAAAQHPAHPFWTTVGDLGSVDEDGYLYLADRKSFMIISGGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGE 442 (501)
T ss_pred cCChhhhHHhhccCCCceEEcCceEEECCCCeEEEeeccccceeECCeeeCHHHHHHHHHhCCCeeEEEEEeccCcccCc
Confidence 999998887763 68999999999999999999999999999999999999999999999999999999999998899
Q ss_pred cceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHH
Q 008389 494 SPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLR 553 (567)
Q Consensus 494 ~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~ 553 (567)
.+++++++.++. ..+ +...+++.++++++|+.++.|..+++++ ||+|++||++|++|+
T Consensus 443 ~~~~~v~~~~~~-~~~-~~~~~~l~~~~~~~l~~~~~P~~~~~~~~iP~t~~GKi~r~~L~ 501 (501)
T PRK13390 443 QVKAVIQLVEGI-RGS-DELARELIDYTRSRIAHYKAPRSVEFVDELPRTPTGKLVKGLLR 501 (501)
T ss_pred eeEEEEEecCCC-Ccc-hhhHHHHHHHHHHhcccCCCCcEEEEeccCCCCCccceehhhcC
Confidence 999999887654 211 1233688999999999999999999888 999999999999984
|
|
| >PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-62 Score=514.46 Aligned_cols=491 Identities=22% Similarity=0.282 Sum_probs=409.9
Q ss_pred cCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCeeee
Q 008389 20 LTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNA 99 (567)
Q Consensus 20 ~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~ 99 (567)
|++.++|++++..+|+++|+...+.++||+||.+++.++|..|.+.|+.+|++|+++++|+.++++++|||+++|++++|
T Consensus 2 ~~~~~~l~~~a~~~p~~~~~~~~~~~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~~~~~~~~~~~~~a~~~~G~~~~~ 81 (503)
T PRK04813 2 MDIIETIEEFAQTQPDFPAYDYLGEKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGAVKAGHAYIP 81 (503)
T ss_pred chHHHHHHHHHHhCCCceEEEeCCcEEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEec
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHHHHHH
Q 008389 100 VNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFL 179 (567)
Q Consensus 100 i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l 179 (567)
+++.++.+++.++++..++++++++.+..... .....+... .+.+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~------------------~~~~~~ 128 (503)
T PRK04813 82 VDVSSPAERIEMIIEVAKPSLIIATEELPLEI---------------LGIPVITLD------------------ELKDIF 128 (503)
T ss_pred CCCCChHHHHHHHHHhcCCCEEEecccccccc---------------cCCcEEehH------------------Hhhhhh
Confidence 99999999999999999999999987651100 011111110 111111
Q ss_pred hcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhhHHHHHHhh
Q 008389 180 QTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAA 259 (567)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~ 259 (567)
... .......+...+++++++|||||||.||+|.++|+++..........+++..+++++...|++|..++...+.++.
T Consensus 129 ~~~-~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~ 207 (503)
T PRK04813 129 ATG-NPYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDFALPEGPQFLNQAPYSFDLSVMDLYPTLA 207 (503)
T ss_pred hcc-ccccccccCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHcCCCcCceeeecCCcchhHhHHHHHHHHh
Confidence 101 1111122346678999999999999999999999999998888888888999999999999999998887777888
Q ss_pred hcCeeEEecc---CCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHHHhc--C
Q 008389 260 LCGTSICLRQ---VTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQK--G 334 (567)
Q Consensus 260 ~g~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~--~ 334 (567)
.|++++..+. .++..+++.++++++|++..+|++++.+.......... ++++|.++++|+++++.+.+++.+. +
T Consensus 208 ~g~~~v~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~-~~~l~~i~~~G~~l~~~~~~~~~~~~~~ 286 (503)
T PRK04813 208 SGGTLVALPKDMTANFKQLFETLPQLPINVWVSTPSFADMCLLDPSFNEEH-LPNLTHFLFCGEELPHKTAKKLLERFPS 286 (503)
T ss_pred cCCEEEEcChhhhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhccCccc-CCCceEEEEecCcCCHHHHHHHHHHCCC
Confidence 8998887754 57899999999999999999999998876554333333 7899999999999999999999854 7
Q ss_pred CeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEecccccc
Q 008389 335 FHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMK 414 (567)
Q Consensus 335 ~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~~ 414 (567)
+++++.||+||++..++........ ........+|.+.+++ .++|+|.+ +.+++.+ +.|||+++|+.++.
T Consensus 287 ~~~~~~yG~tE~~~~~~~~~~~~~~------~~~~~~~~~g~~~~~~-~~~i~d~~-~~~~~~g--~~Gel~v~~~~~~~ 356 (503)
T PRK04813 287 ATIYNTYGPTEATVAVTSIEITDEM------LDQYKRLPIGYAKPDS-PLLIIDEE-GTKLPDG--EQGEIVISGPSVSK 356 (503)
T ss_pred ceEEeCcccchheeEEEEEEecccc------cccCCCCcccccCCCC-EEEEECCC-CCCCCCC--CceEEEEecccccc
Confidence 8999999999997655443222110 1112235689999999 89999975 8888887 78999999999999
Q ss_pred cccCCCccchhccc--C--CccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeecCC
Q 008389 415 GYLKNPKANEETFA--N--GWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADER 490 (567)
Q Consensus 415 gy~~~~~~~~~~~~--~--g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~ 490 (567)
||+++++.+...|. + +||+|||+|++ ++|.+++.||.+|+|+.+|+++++.+||+.+.++|+|.+++|++.++..
T Consensus 357 gy~~~~~~~~~~~~~~~g~~~~~tGD~~~~-~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~ 435 (503)
T PRK04813 357 GYLNNPEKTAEAFFTFDGQPAYHTGDAGYL-EDGLLFYQGRIDFQIKLNGYRIELEEIEQNLRQSSYVESAVVVPYNKDH 435 (503)
T ss_pred ccCCChhHhHHhhccCCCceeEECCceEEe-eCCeEEEeccccceEEECcEEeCHHHHHHHHHhCCCcceEEEEEeeCCC
Confidence 99999998887763 3 49999999999 8999999999999999999999999999999999999999999988777
Q ss_pred CCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHHH
Q 008389 491 WGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAK 557 (567)
Q Consensus 491 ~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~ 557 (567)
.++.++++++..++. .....++.++++++++++++.+.+|..+.+++ +|+|++||++|++|++.+.
T Consensus 436 ~~~~~~~~v~~~~~~-~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~~~~~P~t~~gKv~r~~l~~~~~ 502 (503)
T PRK04813 436 KVQYLIAYVVPKEED-FEREFELTKAIKKELKERLMEYMIPRKFIYRDSLPLTPNGKIDRKALIEEVN 502 (503)
T ss_pred CccEEEEEEEecccc-ccccchhHHHHHHHHHhhCccccCCeEEEEeccCCCCCCCCCcHHHHHHHhc
Confidence 678899999877653 22233455789999999999999999999888 9999999999999998875
|
|
| >PRK08974 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-62 Score=515.23 Aligned_cols=512 Identities=24% Similarity=0.345 Sum_probs=409.5
Q ss_pred ccCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHH-ccCCCCCEEEEEcCChHHHHHHHHhhhhcCCee
Q 008389 19 ALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCK-RSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVL 97 (567)
Q Consensus 19 ~~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~-~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~ 97 (567)
..++.++|+++++++|+++|+++.++++||.||.+++.++|..|.+ .|+++||+|+++++|++++++++|||+++|+++
T Consensus 22 ~~~l~~~l~~~a~~~p~~~a~~~~~~~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~ 101 (560)
T PRK08974 22 YQSLVDMFEQAVARYADQPAFINMGEVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALFGILRAGMIV 101 (560)
T ss_pred cccHHHHHHHHHHhCCCCceEEECCccccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEE
Confidence 3579999999999999999999999999999999999999999984 899999999999999999999999999999999
Q ss_pred eeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCc--cc--c---------
Q 008389 98 NAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDP--KD--L--------- 164 (567)
Q Consensus 98 v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~--~--------- 164 (567)
+|++|.++.+++.++++.+++++++++.+..+.+.+..... ....++......... .. .
T Consensus 102 v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (560)
T PRK08974 102 VNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFKT--------PVKHVILTRMGDQLSTAKGTLVNFVVKYIKR 173 (560)
T ss_pred eccCccCCHHHHHHHHHhcCceEEEEeccccHHHHHHhhhc--------CcceEEEecccccccccccccccchhhhccc
Confidence 99999999999999999999999999887655554433211 112222111000000 00 0
Q ss_pred --hhccCCChHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhc---cCCCcEE
Q 008389 165 --KYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWG---MNEGAVY 239 (567)
Q Consensus 165 --~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~---~~~~d~~ 239 (567)
..........+.+.+...............+++++++|||||||.||+|.++|+++..+.......+. ...++.+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~ 253 (560)
T PRK08974 174 LVPKYHLPDAISFRSALHKGRRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKELV 253 (560)
T ss_pred ccccccCCCcccHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhccccCCCccEE
Confidence 00000111222233322211111112245689999999999999999999999999877655443332 2446678
Q ss_pred EEecCccchhhhHH-HHHHhhhcCeeEEe-ccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhc
Q 008389 240 LWTLPMFHCNGWCY-TWSLAALCGTSICL-RQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNT 317 (567)
Q Consensus 240 ~~~~p~~~~~g~~~-~~~~~~~g~~~~~~-~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~ 317 (567)
+..+|++|.+++.. .+..+..|++.++. ...++..+++.++++++|.+.++|+++..+.......... ++++|.+++
T Consensus 254 ~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~-~~~lr~~~~ 332 (560)
T PRK08974 254 VTALPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEFQELD-FSSLKLSVG 332 (560)
T ss_pred EEeCcHHHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcCcccCC-ccceeEEEe
Confidence 88999999988754 34445567766665 3467889999999999999999999999998765544444 789999999
Q ss_pred cCCCCCHHHHHHHHh-cCCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccC
Q 008389 318 AGAAPPPSVLHAMSQ-KGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVP 396 (567)
Q Consensus 318 ~G~~l~~~~~~~~~~-~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~ 396 (567)
||+++++.+.+.+.+ .++++++.||+||++..++.+.... ......+|.|+|++ .++|+|++ +.+++
T Consensus 333 gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~----------~~~~~~~G~~~~~~-~~~i~~~~-~~~~~ 400 (560)
T PRK08974 333 GGMAVQQAVAERWVKLTGQYLLEGYGLTECSPLVSVNPYDL----------DYYSGSIGLPVPST-EIKLVDDD-GNEVP 400 (560)
T ss_pred cCccCCHHHHHHHHHHhCCcEEeeecccccCceeeccCCCC----------cccCCccccCcCCC-EEEEECCC-CCCCC
Confidence 999999999999886 4899999999999987766543221 12236789999999 89999976 88888
Q ss_pred CCCCceEEEEEecccccccccCCCccchhcccCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCC
Q 008389 397 ADGKTIGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHP 476 (567)
Q Consensus 397 ~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~ 476 (567)
.| +.|||+++|+.++.||+++++.+...|.+|||+|||+++++++|.++++||.+|+|+++|.+++|.+||+.+.+++
T Consensus 401 ~g--~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~IE~~l~~~~ 478 (560)
T PRK08974 401 PG--EPGELWVKGPQVMLGYWQRPEATDEVIKDGWLATGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMLHP 478 (560)
T ss_pred CC--CceEEEEecCCcchhhcCChhhhhhhhhcCCcccCCEEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHHhCC
Confidence 88 7899999999999999999999888888999999999999999999999999999999999999999999999999
Q ss_pred CceeeEEEEeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHH
Q 008389 477 AVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAK 555 (567)
Q Consensus 477 ~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~ 555 (567)
+|.+++|++.++...|+.++++++..+. ..+. +++++++.++++.+..|..+.+++ +|+|++||++|+.|+++
T Consensus 479 ~v~~~~v~~~~~~~~g~~~~~~v~~~~~--~~~~----~~l~~~l~~~l~~~~~P~~~~~~~~lP~t~~GK~~r~~l~~~ 552 (560)
T PRK08974 479 KVLEVAAVGVPSEVSGEAVKIFVVKKDP--SLTE----EELITHCRRHLTGYKVPKLVEFRDELPKSNVGKILRRELRDE 552 (560)
T ss_pred CeeEEEEEeeecCCcceEEEEEEECCCC--CCCH----HHHHHHHHhhcccccCCcEEEEhhhCCCCCCCcEeHHHHHHH
Confidence 9999999999988878877777765432 2233 578889999999999999999887 99999999999999998
Q ss_pred HHHc
Q 008389 556 AKEM 559 (567)
Q Consensus 556 ~~~~ 559 (567)
..+.
T Consensus 553 ~~~~ 556 (560)
T PRK08974 553 ARAK 556 (560)
T ss_pred HHhh
Confidence 7654
|
|
| >PRK07787 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-62 Score=509.21 Aligned_cols=455 Identities=26% Similarity=0.374 Sum_probs=382.5
Q ss_pred hcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCeeeeccccCChHHHH
Q 008389 31 TVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIA 110 (567)
Q Consensus 31 ~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~ 110 (567)
...++++|+++.++++||+||.++++++|..|. ++|+|+++++|++++++++|||+++|++++|+++..+.+++.
T Consensus 11 ~~~~~~~a~~~~~~~~Ty~el~~~~~~~a~~L~-----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~ 85 (471)
T PRK07787 11 AAADIADAVRIGGRVLSRSDLAGAATAVAERVA-----GARRVAVLATPTLATVLAVVGALIAGVPVVPVPPDSGVAERR 85 (471)
T ss_pred cccCCceEEEeCCcEEEHHHHHHHHHHHHHHhc-----cCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCCCCChHHHH
Confidence 356799999999999999999999999999995 579999999999999999999999999999999999999999
Q ss_pred HHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHHHHHHhcCCCCCCCCC
Q 008389 111 FLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKP 190 (567)
Q Consensus 111 ~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 190 (567)
++++.+++++++++.+... . ....+ .+.... ..+ ....
T Consensus 86 ~~l~~~~~~~il~~~~~~~---------~-------~~~~~-~~~~~~--------------~~~-----------~~~~ 123 (471)
T PRK07787 86 HILADSGAQAWLGPAPDDP---------A-------GLPHV-PVRLHA--------------RSW-----------HRYP 123 (471)
T ss_pred HHHHhcCCCEEEecCCccc---------c-------cccce-eeeccc--------------ccc-----------ccCC
Confidence 9999999999999764110 0 01111 000000 000 0001
Q ss_pred CCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhhHHHH-HHhhhcCeeEEecc
Q 008389 191 PQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTW-SLAALCGTSICLRQ 269 (567)
Q Consensus 191 ~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~-~~~~~g~~~~~~~~ 269 (567)
...++++++++|||||||.||+|.++|+++...+......+++..++++++.+|++|..|+...+ ..+..|++++....
T Consensus 124 ~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~ 203 (471)
T PRK07787 124 EPDPDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAWQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVHTGR 203 (471)
T ss_pred CCCCCceEEEEECCCCCCCCCEEEEeHHHHHHHHHHHHHhcCCCccceeEeccCCeeechhHHHHHHHHhcCCEEEecCC
Confidence 13467999999999999999999999999999888888888899999999999999999987644 45566777777777
Q ss_pred CCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHHHh-cCCeeeeccCCccCcC
Q 008389 270 VTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQ-KGFHVTHTYGLSETYG 348 (567)
Q Consensus 270 ~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~-~~~~i~~~YG~tE~~~ 348 (567)
+++..+++.++ +++|.+.++|+++..+.+..... .. ++++|.+++||+++++++.+++.+ ++.++++.||+||++.
T Consensus 204 ~~~~~~~~~i~-~~~t~~~~~P~~~~~l~~~~~~~-~~-l~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~ 280 (471)
T PRK07787 204 PTPEAYAQALS-EGGTLYFGVPTVWSRIAADPEAA-RA-LRGARLLVSGSAALPVPVFDRLAALTGHRPVERYGMTETLI 280 (471)
T ss_pred CCHHHHHHHHh-hCceEEEcchHHHHHHHhCcccc-cc-ccceeEEEECCCCCCHHHHHHHHHHcCCCeecccCccccCc
Confidence 89999999999 99999999999999998754322 22 788999999999999999999985 5889999999999876
Q ss_pred CcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEecccccccccCCCccchhccc
Q 008389 349 PSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFA 428 (567)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~ 428 (567)
.++.... ......++|.|++++ .++|+|++ +++++..+.+.|||+++|++++.||+++++.+...|.
T Consensus 281 ~~~~~~~-----------~~~~~~~vG~~~~g~-~~~i~d~~-~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~t~~~~~ 347 (471)
T PRK07787 281 TLSTRAD-----------GERRPGWVGLPLAGV-ETRLVDED-GGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFT 347 (471)
T ss_pred ceecCCC-----------CcccCCcccccCCCc-EEEEECCC-CCCCCCCCCCceEEEEECcccchhhcCChhhchhccc
Confidence 4433211 011236799999999 89999987 7888743335799999999999999999999988885
Q ss_pred -CCccccCceEEEeCCCcEEEeccc-cceeeeCceecchHHHHHHHhcCCCceeeEEEEeecCCCCCcceEEEEEcCCcc
Q 008389 429 -NGWYHTGDLGVKHPDNYIEIKDRS-KDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVD 506 (567)
Q Consensus 429 -~g~~~TGDl~~~~~~g~l~~~GR~-~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~ 506 (567)
+|||+|||+|++++||++++.||. +|+++.+|.+++|.+||+.+.+++.|.+++|++.++...++.++++++...+
T Consensus 348 ~~~~~~TGDlg~~~~dg~l~~~GR~~d~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~-- 425 (471)
T PRK07787 348 ADGWFRTGDVAVVDPDGMHRIVGRESTDLIKSGGYRIGAGEIETALLGHPGVREAAVVGVPDDDLGQRIVAYVVGADD-- 425 (471)
T ss_pred CCCceecCceEEEcCCCCEEEeCCCCceeEeeCCEEECHHHHHHHHHhCCCcceEEEEcccccccCeEEEEEEEeCCC--
Confidence 899999999999999999999996 8999999999999999999999999999999999988888999999987332
Q ss_pred chhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHH
Q 008389 507 KSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAK 555 (567)
Q Consensus 507 ~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~ 555 (567)
.+. +++.+++++++++++.|..+.+++ ||+|++||++|+.|++.
T Consensus 426 -~~~----~~l~~~l~~~l~~~~~P~~i~~~~~iP~~~~GKi~r~~L~~~ 470 (471)
T PRK07787 426 -VAA----DELIDFVAQQLSVHKRPREVRFVDALPRNAMGKVLKKQLLSE 470 (471)
T ss_pred -CCH----HHHHHHHHhhcccccCCcEEEEeccCCCCCCccccHHHhccC
Confidence 233 678899999999999999999888 99999999999999763
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-63 Score=621.30 Aligned_cols=482 Identities=20% Similarity=0.258 Sum_probs=412.5
Q ss_pred ccCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCeee
Q 008389 19 ALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLN 98 (567)
Q Consensus 19 ~~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v 98 (567)
+.++.++|+++++++|+++|+++.++++||+||.++++++|+.|.+.|+++|++|+++++|++++++++|||+++|++++
T Consensus 510 ~~~~~~~~~~~a~~~p~~~A~~~~~~~~TY~eL~~~~~~lA~~L~~~gv~~g~~V~l~~~~s~~~i~~~la~~~aG~~~v 589 (5163)
T PRK12316 510 QRGVHRLFEEQVERTPEAPALAFGEETLDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAYV 589 (5163)
T ss_pred CCCHHHHHHHHHHHCCCCeEEEeCCceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCCEEe
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHHHHH
Q 008389 99 AVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKF 178 (567)
Q Consensus 99 ~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (567)
|++|.++.+++.++++.+++++++++......+... ....++.++.... .
T Consensus 590 pld~~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~~------------~~~~~~~~~~~~~------------------~ 639 (5163)
T PRK12316 590 PLDPEYPAERLAYMLEDSGVQLLLSQSHLGRKLPLA------------AGVQVLDLDRPAA------------------W 639 (5163)
T ss_pred ccCccCcHHHHHHHHHhCCCCEEEEChhhhhhCCcc------------cCceEEEecCcch------------------h
Confidence 999999999999999999999999987653322100 1122333322100 0
Q ss_pred HhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhhHHHHHHh
Q 008389 179 LQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLA 258 (567)
Q Consensus 179 l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~ 258 (567)
+.. .....+.....++++++++|||||||.||||.++|+++.+.+.+....++++++|+++...|++|..++...+.++
T Consensus 640 ~~~-~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~p~~fd~~~~~~~~~L 718 (5163)
T PRK12316 640 LEG-YSEENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAYGLGVGDTVLQKTPFSFDVSVWEFFWPL 718 (5163)
T ss_pred hcc-CCCCCCCCCCCCCCeEEEEECCCcCCCCCEeeEcCHHHHHHHHHHHHhcCCCCCCEEEeeCCeehHHHHHHHHHHH
Confidence 111 1111112234678999999999999999999999999999999999999999999999999999999998888889
Q ss_pred hhcCeeEEec---cCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHHHhc--
Q 008389 259 ALCGTSICLR---QVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQK-- 333 (567)
Q Consensus 259 ~~g~~~~~~~---~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~-- 333 (567)
+.|+++++.+ ..++..+++.|+++++|++.++|++++.|.+..... . ++++|.+++|||++++++.+.+.+.
T Consensus 719 ~~G~~l~i~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~--~-~~~l~~~~~gGe~l~~~~~~~~~~~~~ 795 (5163)
T PRK12316 719 MSGARLVVAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDEDVA--S-CTSLRRIVCSGEALPADAQEQVFAKLP 795 (5163)
T ss_pred hCCCEEEECCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhccccc--c-CCCccEEEEeeccCCHHHHHHHHHhCC
Confidence 9999998874 368999999999999999999999999998754322 2 7899999999999999999998643
Q ss_pred CCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEeccccc
Q 008389 334 GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVM 413 (567)
Q Consensus 334 ~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~ 413 (567)
++++++.||+||++..++...... .......+|.|++++ .+.|+|++ ++++|.| +.|||+|+|+.++
T Consensus 796 ~~~l~n~YG~TE~~~~~~~~~~~~---------~~~~~~~iG~p~~~~-~~~i~d~~-~~~~p~G--~~GEl~i~G~~v~ 862 (5163)
T PRK12316 796 QAGLYNLYGPTEAAIDVTHWTCVE---------EGGDSVPIGRPIANL-ACYILDAN-LEPVPVG--VLGELYLAGRGLA 862 (5163)
T ss_pred CCeEEeCcCcChheeeeeEEeccc---------ccCCCCCCccccCCC-EEEEECCC-CCCCCCC--CceEEEecccccC
Confidence 789999999999975444322111 112235789999999 89999987 8999988 8899999999999
Q ss_pred ccccCCCccchhccc-------CCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEe
Q 008389 414 KGYLKNPKANEETFA-------NGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVAR 486 (567)
Q Consensus 414 ~gy~~~~~~~~~~~~-------~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~ 486 (567)
.||+++++.+...|. ++||+|||+|++++||.++++||.||+||++|++|+|.|||++|.++|+|.+++|++.
T Consensus 863 ~GYl~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~dG~l~~~GR~d~~ik~~G~rI~~~EIE~~l~~~p~V~~a~V~~~ 942 (5163)
T PRK12316 863 RGYHGRPGLTAERFVPSPFVAGERMYRTGDLARYRADGVIEYAGRIDHQVKLRGLRIELGEIEARLLEHPWVREAAVLAV 942 (5163)
T ss_pred hhhCCChhhhhhhCCCCCCCCCCeeEecCccEEECCCCCEEeecccCCEEEEceEEcChHHHHHHHHhCCCcceEEEEEc
Confidence 999999999998872 3599999999999999999999999999999999999999999999999999999998
Q ss_pred ecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHH
Q 008389 487 ADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKA 556 (567)
Q Consensus 487 ~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~ 556 (567)
+ ++.++++|+..++. .... ++++++++++||.|++|..+++++ ||+|++||++|++|.+..
T Consensus 943 ~----~~~lva~vv~~~~~-~~~~----~~l~~~l~~~Lp~y~vP~~i~~v~~lP~t~~GKidr~~L~~~~ 1004 (5163)
T PRK12316 943 D----GKQLVGYVVLESEG-GDWR----EALKAHLAASLPEYMVPAQWLALERLPLTPNGKLDRKALPAPE 1004 (5163)
T ss_pred C----CCeEEEEEEccCCC-CCCH----HHHHHHHHhhCCCccCCCeEEEHhhCCCCCCCChhHHhhcCcc
Confidence 6 56799999987654 3333 689999999999999999999888 999999999999998653
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-63 Score=612.20 Aligned_cols=501 Identities=21% Similarity=0.265 Sum_probs=418.5
Q ss_pred cccchhhhcccCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHh
Q 008389 10 LPKNAANYMALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFG 89 (567)
Q Consensus 10 ~~~~~~~~~~~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA 89 (567)
++....+.++.++.++|+++++++|+++|+++.++++||+||+++++++|+.|.+.|+++|++|++++++++++++++||
T Consensus 502 ~~~~~~~~~~~~~~~~~~~~a~~~pd~~Al~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~la 581 (3956)
T PRK12467 502 WNAPATEYAPDCVHQLIEAQARQHPERPALVFGEQVLSYAELNRQANRLAHVLIAAGVGPDVLVGIAVERSIEMVVGLLA 581 (3956)
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHCCCCeEEEeCCceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 33344444567999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCeeeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccC
Q 008389 90 VPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALG 169 (567)
Q Consensus 90 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 169 (567)
|+++|++++|++|.++.+++.++++++++++++++.+....+.. . ....++.++....
T Consensus 582 il~aG~~~vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~-----~-------~~~~~~~~~~~~~---------- 639 (3956)
T PRK12467 582 VLKAGGAYVPLDPEYPQDRLAYMLDDSGVRLLLTQSHLLAQLPV-----P-------AGLRSLCLDEPAD---------- 639 (3956)
T ss_pred HHHhCcEEeccCCCChHHHHHHHHHhcCCCEEEechhhhhhccc-----c-------cCccEEEeccccc----------
Confidence 99999999999999999999999999999999998754322110 0 1122222222100
Q ss_pred CChHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchh
Q 008389 170 RGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCN 249 (567)
Q Consensus 170 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~ 249 (567)
.+.. .....+..+..++++++++|||||||.||||.++|+++.+.+......+++.++|+++...|++|..
T Consensus 640 --------~~~~-~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~ 710 (3956)
T PRK12467 640 --------LLCG-YSGHNPEVALDPDNLAYVIYTSGSTGQPKGVAISHGALANYVCVIAERLQLAADDSMLMVSTFAFDL 710 (3956)
T ss_pred --------cccc-cCCCCCCCCCCCCCeEEEEECCCCCCCcCEEEEecHHHHHHHHHHHHhcCCCCCCEEEEecCccHhH
Confidence 0000 0111112235678999999999999999999999999999999988899999999999999999999
Q ss_pred hhHHHHHHhhhcCeeEEecc---CCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHH
Q 008389 250 GWCYTWSLAALCGTSICLRQ---VTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSV 326 (567)
Q Consensus 250 g~~~~~~~~~~g~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~ 326 (567)
++...+.++..|+++++.+. .++..+++.|+++++|++.++|++++.+++...... ..++|.+++|||++++++
T Consensus 711 ~~~~~~~~L~~G~~lv~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~---~~~lr~i~~gGe~l~~~~ 787 (3956)
T PRK12467 711 GVTELFGALASGATLHLLPPDCARDAEAFAALMADQGVTVLKIVPSHLQALLQASRVAL---PRPQRALVCGGEALQVDL 787 (3956)
T ss_pred HHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEcCHHHHHHHHhhhcccc---CCcccEEEEEeecCCHHH
Confidence 99888888999999988753 689999999999999999999999999987643322 567799999999999999
Q ss_pred HHHHHhc--CCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEE
Q 008389 327 LHAMSQK--GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGE 404 (567)
Q Consensus 327 ~~~~~~~--~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Ge 404 (567)
.+.+.+. ++++++.||+||++..++........ .......+|.|++++ .+.|+|++ ++++|.| +.||
T Consensus 788 ~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~-------~~~~~~~iG~p~~~~-~~~i~d~~-~~~vp~G--~~GE 856 (3956)
T PRK12467 788 LARVRALGPGARLINHYGPTETTVGVSTYELSDEE-------RDFGNVPIGQPLANL-GLYILDHY-LNPVPVG--VVGE 856 (3956)
T ss_pred HHHHHHhCCCCEEEeCcCCChhhhheeeEeccccc-------ccCCCCcccCCcCCC-EEEEECCC-CCCCCCC--CceE
Confidence 9999865 58999999999998766654322110 001125689999999 89999986 8999998 8999
Q ss_pred EEEecccccccccCCCccchhccc--------CCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCC
Q 008389 405 IVMSGNVVMKGYLKNPKANEETFA--------NGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHP 476 (567)
Q Consensus 405 i~v~~~~~~~gy~~~~~~~~~~~~--------~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~ 476 (567)
|+|+|+.+++||+++++.+.++|. ++||+|||+|++++||.++++||.||+||++|.+|+|.|||+.|.++|
T Consensus 857 L~i~G~~v~~GYl~~p~~T~~~F~~~p~~~~g~r~yrTGDl~~~~~dG~l~~~GR~d~~vki~G~rI~~~eIE~~L~~~p 936 (3956)
T PRK12467 857 LYIGGAGLARGYHRRPALTAERFVPDPFGADGGRLYRTGDLARYRADGVIEYLGRMDHQVKIRGFRIELGEIEARLLAQP 936 (3956)
T ss_pred EEecccccchhhcCCccccHhhCcCCCCCCCCceeEecCceeEEcCCCcEEEeccccCeEEECCEecCHHHHHHHHHhCC
Confidence 999999999999999999998882 249999999999999999999999999999999999999999999999
Q ss_pred CceeeEEEEeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHH
Q 008389 477 AVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAK 555 (567)
Q Consensus 477 ~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~ 555 (567)
+|.+++|++.++. .+..++++++..............+++++++++.||.|++|..+++++ +|+|++||++|++|++.
T Consensus 937 ~V~~a~v~~~~~~-~~~~lva~vv~~~~~~~~~~~~~~~~l~~~l~~~Lp~y~vP~~~~~l~~lP~t~~GKidR~~L~~~ 1015 (3956)
T PRK12467 937 GVREAVVLAQPGD-AGLQLVAYLVPAAVADGAEHQATRDELKAQLRQVLPDYMVPAHLLLLDSLPLTPNGKLDRKALPKP 1015 (3956)
T ss_pred CcceEEEEEEcCC-CCcEEEEEEEecccccccccccCHHHHHHHHHhhCchhcCCceEeeecccCCCCCCCcCHhhcCCc
Confidence 9999999986544 467899999865443222222233789999999999999999999888 99999999999999876
Q ss_pred H
Q 008389 556 A 556 (567)
Q Consensus 556 ~ 556 (567)
.
T Consensus 1016 ~ 1016 (3956)
T PRK12467 1016 D 1016 (3956)
T ss_pred c
Confidence 4
|
|
| >PLN03051 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-62 Score=510.32 Aligned_cols=459 Identities=17% Similarity=0.205 Sum_probs=353.4
Q ss_pred cCChHHHHHHHHhhhhcCCeeeeccccCChHHHHHHHhccCceEEEEcccc------hHHHHHHHHHHhhhcCCCCCCCe
Q 008389 77 APNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEY------FKLAEEALKIMEEKSNGRFKPPL 150 (567)
Q Consensus 77 ~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 150 (567)
++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+++.. .+.+....... .. .
T Consensus 1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~--------~~-~ 71 (499)
T PLN03051 1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVEAA--------PA-K 71 (499)
T ss_pred CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhhcc--------cc-e
Confidence 589999999999999999999999999999999999999999999998643 12222211110 11 2
Q ss_pred EEEecCCCCCcccchhccCCChHHHHHHHhcCCC----CC-CC-CCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHH
Q 008389 151 LIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDP----QF-DW-KPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMS 224 (567)
Q Consensus 151 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~-~~-~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~ 224 (567)
.+.+........ . ........+++++..... .. .. ....+++++++|+|||||||.||||.+||++++...
T Consensus 72 ~i~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~ 148 (499)
T PLN03051 72 AIVLPAAGEPVA-V--PLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCA 148 (499)
T ss_pred EEEEeccCcccC-C--ccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHH
Confidence 222221100000 0 000122346666532111 00 11 111355899999999999999999999999988776
Q ss_pred HHHHHHhccCCCcEEEEecCccchhhhHHHHHHhhhcCeeEEec-cCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCC-
Q 008389 225 LSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAALCGTSICLR-QVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPS- 302 (567)
Q Consensus 225 ~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~- 302 (567)
......++++++|++++.+|++|..++...+.++..|+++++.. .+++..+++.|+++++|++.++|+++..|++...
T Consensus 149 ~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~ 228 (499)
T PLN03051 149 SDGWAHMDIQPGDVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAF 228 (499)
T ss_pred HHHHHhcCCCCCCEEEEccCcceeeehHHHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCcc
Confidence 65666678899999999999999999876667777888888876 3688999999999999999999999999987543
Q ss_pred -CCCcCCCCchhhhhccCCCCCHHHHHHHHh-c--CCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCcee
Q 008389 303 -EDTILPLPHVVHVNTAGAAPPPSVLHAMSQ-K--GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRF 378 (567)
Q Consensus 303 -~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~-~--~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 378 (567)
....+ +++||.+++||++++++..+++.+ . ++++++.||+||+++.+...... .....+++|.|.
T Consensus 229 ~~~~~~-~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~----------~~~~~~~~G~p~ 297 (499)
T PLN03051 229 AMEGLD-WSKLRVFASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTELASGYISSTLL----------QPQAPGAFSTAS 297 (499)
T ss_pred ccccCC-chhheEEEecCCCCCHHHHHHHHHhccccceeEeeeccccccceeeccccc----------CCCCCccccCCC
Confidence 22233 789999999999999999988776 3 37899999999986543321100 011236799999
Q ss_pred ccccceeEeeCCCCCccCCCCCceEEEEEecccc--cccccCCCccchhcccCC----------ccccCceEEEeCCCcE
Q 008389 379 IGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVV--MKGYLKNPKANEETFANG----------WYHTGDLGVKHPDNYI 446 (567)
Q Consensus 379 ~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~--~~gy~~~~~~~~~~~~~g----------~~~TGDl~~~~~~g~l 446 (567)
+++ +++|+|++ |++++.|..+.|||+++|+.+ +.||++++. + ..|.+| ||+|||+|++|+||++
T Consensus 298 ~~~-~~~ivd~~-g~~~~~g~~~~Gel~v~g~~~~~~~gy~~~~~-~-~~~~~g~~~~~~~~~~~~~TGDlg~~d~dG~l 373 (499)
T PLN03051 298 LGT-RFVLLNDN-GVPYPDDQPCVGEVALAPPMLGASDRLLNADH-D-KVYYKGMPMYGSKGMPLRRHGDIMKRTPGGYF 373 (499)
T ss_pred CCc-eEEEECCC-CCCCCCCCCcceEEEEecCcCCCCccccCCcc-c-ceeeecCCccccCCcceeecCCeEEECCCCcE
Confidence 999 89999976 888988754589999999976 579997542 2 233344 6899999999999999
Q ss_pred EEeccccceeeeCceecchHHHHHHHhc-CCCceeeEEEEeecCCCC-CcceEEE---EEcCCccchhhHHHHHHHHHHH
Q 008389 447 EIKDRSKDIIISGGENISSVEVENMMYL-HPAVLEASVVARADERWG-ESPCAFV---TLKPEVDKSNEQQLAEDIMKFC 521 (567)
Q Consensus 447 ~~~GR~~d~i~~~G~~v~~~~iE~~l~~-~~~i~~~~v~~~~~~~~g-~~~~~~v---~~~~~~~~~~~~~~~~~l~~~l 521 (567)
++.||.||+||++|++|+|.|||++|.+ ||+|.+++|++.+++..| +.++++| +++++....+.+++.+.+++++
T Consensus 374 ~~~gR~~d~ik~~G~~v~p~EIE~~l~~~~p~V~~aavvg~~d~~~g~~~~~a~v~~~v~~~~~~~~~~~~l~~~~~~~l 453 (499)
T PLN03051 374 CVQGRADDTMNLGGIKTSSVEIERACDRAVAGIAETAAVGVAPPDGGPELLVIFLVLGEEKKGFDQARPEALQKKFQEAI 453 (499)
T ss_pred EEEeccCCEEeeCCEECCHHHHHHHHHhcCCCcceEEEEEecCCCCCceEEEEEEEcceecccccccchHHHHHHHHHHH
Confidence 9999999999999999999999999986 999999999999999888 6788988 7766542345556666777778
Q ss_pred HhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHHHHcCCc
Q 008389 522 RAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKEMGPV 562 (567)
Q Consensus 522 ~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~~~ 562 (567)
+++|+.+..|..|.+++ ||+|++||++|++|++++.+...-
T Consensus 454 ~~~l~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~~ 495 (499)
T PLN03051 454 QTNLNPLFKVSRVKIVPELPRNASNKLLRRVLRDQLKKELSG 495 (499)
T ss_pred HhhcCCccCCceEEEcCCCCCCCCccHHHHHHHHHHHHhhcc
Confidence 88898877777788888 999999999999999988777553
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-63 Score=620.81 Aligned_cols=488 Identities=21% Similarity=0.268 Sum_probs=413.2
Q ss_pred ccCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCeee
Q 008389 19 ALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLN 98 (567)
Q Consensus 19 ~~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v 98 (567)
+.++.++|.++++++|+++|+++.++++||+||++++.++|..|.+.|+++|++|++++++++++++++|||+++|++++
T Consensus 2002 ~~~~~~~~~~~a~~~p~~~A~~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~~~~~lAil~aGa~~v 2081 (5163)
T PRK12316 2002 GPGVHQRIAEQAARAPEAIAVVFGDQHLSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKAGGAYV 2081 (5163)
T ss_pred CCCHHHHHHHHHHhCCCCeEEEcCCCeEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhceEEe
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHHHHH
Q 008389 99 AVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKF 178 (567)
Q Consensus 99 ~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (567)
|++|.++.+++.++++.+++++++++.+....+... .....+.+... ..+
T Consensus 2082 pld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~------------~~~~~~~~~~~---------------~~~--- 2131 (5163)
T PRK12316 2082 PLDPNYPAERLAYMLEDSGAALLLTQRHLLERLPLP------------AGVARLPLDRD---------------AEW--- 2131 (5163)
T ss_pred ecCCCCCHHHHHHHHHhcCCCEEEeChhhhhhcccc------------cccceEeccch---------------hhh---
Confidence 999999999999999999999999987654332110 01111222110 000
Q ss_pred HhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhhHHHHHHh
Q 008389 179 LQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLA 258 (567)
Q Consensus 179 l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~ 258 (567)
.. .+...+.....++++++|+|||||||.||||.++|+++.+.+......++++++|+++...|++|..++...+.++
T Consensus 2132 -~~-~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~L 2209 (5163)
T PRK12316 2132 -AD-YPDTAPAVQLAGENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERYELSPADCELQFMSFSFDGAHEQWFHPL 2209 (5163)
T ss_pred -hc-cCccCCCCCCCCCCeEEEEeCccCCCCCCEeEEccHHHHHHHHHHHHhcCCCCcceEEEecCchHHHHHHHHHHHH
Confidence 00 0111122235678999999999999999999999999999999988899999999999999999988888888888
Q ss_pred hhcCeeEEecc--CCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHHHhc--C
Q 008389 259 ALCGTSICLRQ--VTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQK--G 334 (567)
Q Consensus 259 ~~g~~~~~~~~--~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~--~ 334 (567)
+.|+++++.+. +++..+++.|+++++|++.++|+++..+.+....... ..++|.+++|||+++++..+.|.+. +
T Consensus 2210 ~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~--~~~lr~~~~gGe~l~~~~~~~~~~~~~~ 2287 (5163)
T PRK12316 2210 LNGARVLIRDDELWDPEQLYDEMERHGVTILDFPPVYLQQLAEHAERDGR--PPAVRVYCFGGEAVPAASLRLAWEALRP 2287 (5163)
T ss_pred hCCCEEEeCCcccCCHHHHHHHHHHcCCeEEEcChHHHHHHHhhhhcccC--CcceeEEEEecccCCHHHHHHHHHhCCC
Confidence 89999866543 5889999999999999999999999999876543332 4589999999999999999999853 6
Q ss_pred CeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEecccccc
Q 008389 335 FHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMK 414 (567)
Q Consensus 335 ~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~~ 414 (567)
.++++.||+||++..++....... .........+|.|++++ .+.|+|++ ++++|.| ++|||+|+|+.+++
T Consensus 2288 ~~l~n~YG~TE~~~~~~~~~~~~~------~~~~~~~~~iG~p~~~~-~~~i~d~~-~~~vp~g--~~GEl~i~G~~v~~ 2357 (5163)
T PRK12316 2288 VYLFNGYGPTEAVVTPLLWKCRPQ------DPCGAAYVPIGRALGNR-RAYILDAD-LNLLAPG--MAGELYLGGEGLAR 2357 (5163)
T ss_pred cEEEECccchhheeeeeeeecccc------cccCCCcCCcccccCCC-EEEEECCC-CCCCCCC--CeeEEEecchhhcc
Confidence 789999999999765544322111 00111125689999999 89999987 8899998 89999999999999
Q ss_pred cccCCCccchhccc--------CCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEe
Q 008389 415 GYLKNPKANEETFA--------NGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVAR 486 (567)
Q Consensus 415 gy~~~~~~~~~~~~--------~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~ 486 (567)
||+++++.+...|. ++||+|||+|++++||.++++||+||+||++|.+|++.|||.+|.++|+|.+++|++.
T Consensus 2358 GY~~~p~~T~~~f~~~~~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~~iki~G~rie~~eIE~~l~~~~~v~~a~v~~~ 2437 (5163)
T PRK12316 2358 GYLNRPGLTAERFVPDPFSASGERLYRTGDLARYRADGVVEYLGRIDHQVKIRGFRIELGEIEARLQAHPAVREAVVVAQ 2437 (5163)
T ss_pred cccCChhhhhhhccCCCCCCCCCeeEecccEEEEcCCCcEEEecCCCCeEEEcCccCChHHHHHHHhhCcccceEEEEEE
Confidence 99999999999882 3599999999999999999999999999999999999999999999999999999988
Q ss_pred ecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHH
Q 008389 487 ADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKA 556 (567)
Q Consensus 487 ~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~ 556 (567)
++. .++.++++|+..++. ..+. ++++++++++||.|++|..+++++ ||+|++||++|++|++..
T Consensus 2438 ~~~-~~~~l~a~v~~~~~~-~~~~----~~l~~~l~~~Lp~~~vP~~~~~l~~lP~t~~GKidR~~L~~~~ 2502 (5163)
T PRK12316 2438 DGA-SGKQLVAYVVPDDAA-EDLL----AELRAWLAARLPAYMVPAHWVVLERLPLNPNGKLDRKALPKPD 2502 (5163)
T ss_pred ecC-CCeEEEEEEEecCCC-ccCH----HHHHHHHHhhCchhcCcceEeeecccCCCCCCccCHhhcCCCc
Confidence 766 578999999987765 3334 789999999999999999999888 999999999999997653
|
|
| >PRK12406 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-61 Score=505.55 Aligned_cols=491 Identities=26% Similarity=0.357 Sum_probs=400.7
Q ss_pred eeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCeeeeccccCChHHHHHHHhcc
Q 008389 37 TSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHS 116 (567)
Q Consensus 37 ~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~ 116 (567)
.|+...++.+||.||.++++++|+.|.+.|+.+||+|+++++|+++++++++||+++|++++++++.++.+++.++++.+
T Consensus 3 ~~~~~~~~~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~ 82 (509)
T PRK12406 3 ATIISGDRRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDS 82 (509)
T ss_pred eEEEECCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhcc
Confidence 46777889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCc-----ccchhccCCChHHHHHHHhcCCCCCCCCCC
Q 008389 117 ASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDP-----KDLKYALGRGAVEYEKFLQTGDPQFDWKPP 191 (567)
Q Consensus 117 ~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 191 (567)
++++++++......+.+.. + ....++.+....... .............+++++...... ..
T Consensus 83 ~~~~i~~~~~~~~~~~~~~---~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 148 (509)
T PRK12406 83 GARVLIAHADLLHGLASAL---P-------AGVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQEPY----DG 148 (509)
T ss_pred CCcEEEEccchhhhhhhhh---h-------cccceeecccccccccccccccccccCCCCccCHHHHhcccCcc----CC
Confidence 9999999887655443221 1 111122111110000 000001122334566554332211 12
Q ss_pred CCcCceEEEEecCCCCCCCCeeeeccHHH---HHHHHHHHHHhccCCCcEEEEecCccchhhhHHHHHHhhhcCeeEEec
Q 008389 192 QDEWQSIALGYTSGTTASPKGVVLSHRGA---YLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAALCGTSICLR 268 (567)
Q Consensus 192 ~~~~~~~~i~~TSGtTG~pK~v~~t~~~l---~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~ 268 (567)
...+++++++|||||||.||+|.++|... ..........+++.+++++++..|++|..+..+.+..+..|+++++.+
T Consensus 149 ~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~ 228 (509)
T PRK12406 149 PPVPQPQSMIYTSGTTGHPKGVRRAAPTPEQAAAAEQMRALIYGLKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQP 228 (509)
T ss_pred CCCCCceEEEECCCCCCCCceEEEechhHHHHHHHHHhhhhhcCCCCCceEEEEeCCcccchHHHHHHHHhhheEEEEcc
Confidence 34679999999999999999999876543 333444456678899999999999999988887777788899888888
Q ss_pred cCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCC--CCcCCCCchhhhhccCCCCCHHHHHHHHhc-CCeeeeccCCcc
Q 008389 269 QVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSE--DTILPLPHVVHVNTAGAAPPPSVLHAMSQK-GFHVTHTYGLSE 345 (567)
Q Consensus 269 ~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~--~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~-~~~i~~~YG~tE 345 (567)
..++..+++.++++++|.+.++|+++..++..... ...+ ++++|.+++||+++++++.+++.+. ++.+++.||+||
T Consensus 229 ~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~-~~~l~~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE 307 (509)
T PRK12406 229 RFDPEELLQLIERHRITHMHMVPTMFIRLLKLPEEVRAKYD-VSSLRHVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTE 307 (509)
T ss_pred CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCchhhcccCC-CCceeEEEEcCCCCCHHHHHHHHHHcCCcEEeeccccc
Confidence 88999999999999999999999999999875432 2233 7899999999999999999999864 889999999999
Q ss_pred CcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEecccccc-cccCCCccch
Q 008389 346 TYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMK-GYLKNPKANE 424 (567)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~~-gy~~~~~~~~ 424 (567)
++.+++.+... .....+++|.|++++ .++++|+. +++++.+ +.|||+++++.++. ||+++++.+.
T Consensus 308 ~~~~~~~~~~~----------~~~~~~~~G~~~~~~-~~~i~d~~-~~~~~~g--~~Gel~v~~~~~~~~~y~~~~~~~~ 373 (509)
T PRK12406 308 SGAVTFATSED----------ALSHPGTVGKAAPGA-ELRFVDED-GRPLPQG--EIGEIYSRIAGNPDFTYHNKPEKRA 373 (509)
T ss_pred cCceEecCccc----------ccccCCCcCccCCCc-EEEEECCC-CCCCCCC--CceEEEEECCccccccccCCchhcc
Confidence 98755432211 112236789999999 89999976 8888888 78999999998875 9999998888
Q ss_pred hcccCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeecCCCCCcceEEEEEcCC
Q 008389 425 ETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPE 504 (567)
Q Consensus 425 ~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~ 504 (567)
..+.++||+|||+++++++|.+++.||.+|+|+++|.+|++.+||+.|.++++|.++++++.++...++.+++++++.++
T Consensus 374 ~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~ik~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~ 453 (509)
T PRK12406 374 EIDRGGFITSGDVGYLDADGYLFLCDRKRDMVISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGEALMAVVEPQPG 453 (509)
T ss_pred cccCCCCeEEccEEEEcCCceEEEeecccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeeeccccCceeEEEEEECCC
Confidence 88889999999999999999999999999999999999999999999999999999999999988778889999988765
Q ss_pred ccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHHHHcCC
Q 008389 505 VDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKEMGP 561 (567)
Q Consensus 505 ~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~~ 561 (567)
. ..+. +++++.+++.++++++|..+.+.+ +|+|++||++|++|++.+.+.+.
T Consensus 454 ~-~~~~----~~l~~~l~~~l~~~~~P~~i~~~~~iP~t~~GK~~r~~L~~~~~~~~~ 506 (509)
T PRK12406 454 A-TLDE----ADIRAQLKARLAGYKVPKHIEIMAELPREDSGKIFKRRLRDPYWANAG 506 (509)
T ss_pred C-CCCH----HHHHHHHHHhcccCCCCcEEEEeccCCCCCccchhHHHHHHHHHhhcc
Confidence 4 3344 678899999999999999999887 99999999999999999887653
|
|
| >PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-62 Score=501.06 Aligned_cols=430 Identities=17% Similarity=0.191 Sum_probs=357.8
Q ss_pred ccccHHHHHHHHHHHHHHHHHccC-CCCCEEEEEcCChHHHHHHHHhhhhcCCeeeeccccCChHHHHHHHhccCceEEE
Q 008389 44 TRYTWLQTYQRCRRLASALCKRSI-GLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIM 122 (567)
Q Consensus 44 ~~~Ty~el~~~~~~lA~~L~~~g~-~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi 122 (567)
..+.|+||.+++.++|+.|.+.|+ .+|++|+++++|++++++++|||+++|++++|++|.++.+++.++++.+++++++
T Consensus 18 ~~~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i 97 (452)
T PRK07445 18 IGYNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIW 97 (452)
T ss_pred eecChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEE
Confidence 347899999999999999999988 5799999999999999999999999999999999999999999999999999999
Q ss_pred EcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHHHHHHhcCCCCCCCCCCCCcCceEEEEe
Q 008389 123 VDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGY 202 (567)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~ 202 (567)
++.+.... . .... . . ......++++++++|
T Consensus 98 ~~~~~~~~-----------------~-----~~~~----------------~--------~----~~~~~~~~~~~~i~~ 127 (452)
T PRK07445 98 GLDQLKLS-----------------H-----PPPL----------------P--------S----QGILPNLETGWIMIP 127 (452)
T ss_pred ecCccccc-----------------c-----CCCC----------------C--------c----cccCCCCCCcEEEEe
Confidence 87653210 0 0000 0 0 001134578999999
Q ss_pred cCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhhHHHHHHhhhcCeeEEeccCCHHHHHHHHHhh
Q 008389 203 TSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAALCGTSICLRQVTAKAVYSAIAKY 282 (567)
Q Consensus 203 TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~ 282 (567)
||||||.||+|.+||+++...+......+++.+ ++.++.+|++|.+|+...+.++..|+++++.+............++
T Consensus 128 TSGTTG~PKgV~~t~~~l~~~~~~~~~~~~~~~-~~~~~~~Pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~~~~ 206 (452)
T PRK07445 128 TGGSSGQIRFAIHTWETLTASVQGFQRYFQLQQ-VNSFCVLPLYHVSGLMQFMRSFLTGGKLVILPYKRLKSGQELPPNP 206 (452)
T ss_pred CCCCCCCCcEEEechHHHHHHHHHHHHHhcCCC-CceEeccCchhhhhHHHHHHHHHcCCeEEEcChHhccchhhhhhhc
Confidence 999999999999999999888887777777765 4678899999999998777788889988777533223233444578
Q ss_pred CceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHHHhcCCeeeeccCCccCcCCcccccCCCCCCCC
Q 008389 283 GVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSL 362 (567)
Q Consensus 283 ~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~ 362 (567)
+++++.++|++++.+++.. ... ++++|.+++||+++++++.+.+.+.++++++.||+||+++.+.....
T Consensus 207 ~~t~~~~vP~~l~~l~~~~---~~~-l~~l~~i~~gG~~l~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~------- 275 (452)
T PRK07445 207 SDFFLSLVPTQLQRLLQLR---PQW-LAQFRTILLGGAPAWPSLLEQARQLQLRLAPTYGMTETASQIATLKP------- 275 (452)
T ss_pred CceEEEehHHHHHHHHhhC---hhh-hhcceEEEECCccCCHHHHHHHHhcCCeEecCcchhhhcccccccCc-------
Confidence 9999999999999998632 122 78999999999999999999888779999999999998765443211
Q ss_pred ChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEecccccccccCCCccchhcccCCccccCceEEEeC
Q 008389 363 PPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHP 442 (567)
Q Consensus 363 ~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~ 442 (567)
........++|.|+|++ +++|++ + +.|||+++|+.++.||++++.. .+|||+|||+|++++
T Consensus 276 --~~~~~~~~~~G~~~p~~-~v~i~~---------g--~~Gel~v~g~~~~~gY~~~~~~-----~~g~~~TGDl~~~d~ 336 (452)
T PRK07445 276 --DDFLAGNNSSGQVLPHA-QITIPA---------N--QTGNITIQAQSLALGYYPQILD-----SQGIFETDDLGYLDA 336 (452)
T ss_pred --hhhccCCCcCCccCCCC-eEEEcC---------C--CcceEEEeCCccchhhcCCccC-----CCCEEECCCEEEEcC
Confidence 11112246789999999 788871 2 6799999999999999975431 378999999999999
Q ss_pred CCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHH
Q 008389 443 DNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCR 522 (567)
Q Consensus 443 ~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~ 522 (567)
||++++.||.||+|+++|++|+|.+||+++.++|+|.+++|++.+++..|+.++++++..++. .+. ++++++++
T Consensus 337 dG~l~~~GR~dd~I~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~g~~~~a~vv~~~~~--~~~----~~l~~~~~ 410 (452)
T PRK07445 337 QGYLHILGRNSQKIITGGENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVVTAIYVPKDPS--ISL----EELKTAIK 410 (452)
T ss_pred CCCEEEEeecCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeccCcCCCcEEEEEEEeCCCC--CCH----HHHHHHHH
Confidence 999999999999999999999999999999999999999999999998899999999987652 233 68899999
Q ss_pred hcCCCCCCCceeecCc-ccCCCCccccHHHHHHHHHHcC
Q 008389 523 AKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKEMG 560 (567)
Q Consensus 523 ~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~ 560 (567)
++|+.+++|+.+++++ +|+|++||++|++|++++.+..
T Consensus 411 ~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~ 449 (452)
T PRK07445 411 DQLSPFKQPKHWIPVPQLPRNPQGKINRQQLQQIAVQRL 449 (452)
T ss_pred HhCCcccCCeEEEEecCCCCCCCcccCHHHHHHHHHHhh
Confidence 9999999999999888 9999999999999999987753
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-63 Score=612.10 Aligned_cols=493 Identities=20% Similarity=0.248 Sum_probs=415.2
Q ss_pred ccCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCeee
Q 008389 19 ALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLN 98 (567)
Q Consensus 19 ~~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v 98 (567)
+.++.++|.+++.++|+++|+++.+.++||+||+++++++|+.|.+.|+++|++|+|++++++++++++||++++|++++
T Consensus 3719 ~~~~~~~~~~~~~~~p~~~Av~~~~~~~tY~eL~~~~~~la~~L~~~gv~~~~~V~v~~~~s~~~~v~~lavlkaG~a~v 3798 (4334)
T PRK05691 3719 EQSYVRLFEAQVAAHPQRIAASCLDQQWSYAELNRAANRLGHALRAAGVGVDQPVALLAERGLDLLGMIVGSFKAGAGYL 3798 (4334)
T ss_pred ccCHHHHHHHHHHhCCCceEEEcCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhCcEEe
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHHHHH
Q 008389 99 AVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKF 178 (567)
Q Consensus 99 ~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (567)
|++|.++.+++.++++.+++++++++....+........+... ....++..+...
T Consensus 3799 pld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-------------------- 3853 (4334)
T PRK05691 3799 PLDPGLPAQRLQRIIELSRTPVLVCSAACREQARALLDELGCA-----NRPRLLVWEEVQ-------------------- 3853 (4334)
T ss_pred CCCCCChHHHHHHHHHhcCCCEEEecCcccchhhhhhcccccc-----cccceeeecccc--------------------
Confidence 9999999999999999999999999988765444332222100 111222221110
Q ss_pred HhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhhHHHHHHh
Q 008389 179 LQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLA 258 (567)
Q Consensus 179 l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~ 258 (567)
....+...+.....+++.+|++|||||||.||||+++|+++.+.+......++++++|+++...++.+..++...+.++
T Consensus 3854 -~~~~~~~~~~~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~s~~fd~s~~~~~~~l 3932 (4334)
T PRK05691 3854 -AGEVASHNPGIYSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYLALSEADVIAQTASQSFDISVWQFLAAP 3932 (4334)
T ss_pred -cccccccCCCCCCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhcCCCccceEEEecCCchhHHHHHHHHHH
Confidence 0001111122235678999999999999999999999999999999888899999999999999999999999999999
Q ss_pred hhcCeeEEecc---CCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHHHhc--
Q 008389 259 ALCGTSICLRQ---VTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQK-- 333 (567)
Q Consensus 259 ~~g~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~-- 333 (567)
+.|+++++++. .++..+++.++++++|++.++|+.+..++..... .+++||.+++|||++++++.+.|.+.
T Consensus 3933 ~~G~~l~i~~~~~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~~~----~~~~lr~~~~gGe~l~~~~~~~~~~~~~ 4008 (4334)
T PRK05691 3933 LFGARVEIVPNAIAHDPQGLLAHVQAQGITVLESVPSLIQGMLAEDRQ----ALDGLRWMLPTGEAMPPELARQWLQRYP 4008 (4334)
T ss_pred hCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhccc----cCCCceEEEecCCcCCHHHHHHHHHhCC
Confidence 99999988754 5789999999999999999999999998754321 27889999999999999999999754
Q ss_pred CCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEeccccc
Q 008389 334 GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVM 413 (567)
Q Consensus 334 ~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~ 413 (567)
++++++.||+||++..++........ .......+|.|++++ .+.|+|.. ++++|.| ..|||+|+|+.++
T Consensus 4009 ~~~l~n~YG~TE~t~~~~~~~~~~~~-------~~~~~~~iG~p~~~~-~~~v~d~~-~~~~p~g--~~GEL~i~G~~v~ 4077 (4334)
T PRK05691 4009 QIGLVNAYGPAECSDDVAFFRVDLAS-------TRGSYLPIGSPTDNN-RLYLLDEA-LELVPLG--AVGELCVAGTGVG 4077 (4334)
T ss_pred CCeEEeCccCccceeEEEEEEccccc-------ccCCcCCCCCccCCC-EEEEECCC-CCCCCCC--CceEEEEeccccc
Confidence 78999999999998766544322110 111234689999999 89999976 8999998 8999999999999
Q ss_pred ccccCCCccchhcc--------cCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEE
Q 008389 414 KGYLKNPKANEETF--------ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVA 485 (567)
Q Consensus 414 ~gy~~~~~~~~~~~--------~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~ 485 (567)
+||+++++.+..+| .++||+|||+|++++||.++++||.|++||++|.+|.+.|||+.+.++|+|.+++|+.
T Consensus 4078 ~GY~~~~~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~riel~eIE~~l~~~~~v~~a~v~~ 4157 (4334)
T PRK05691 4078 RGYVGDPLRTALAFVPHPFGAPGERLYRTGDLARRRSDGVLEYVGRIDHQVKIRGYRIELGEIEARLHEQAEVREAAVAV 4157 (4334)
T ss_pred ccccCCcccchhhcccCCCCCCCceeeccCcceeecCCCcEEEecccCCcEEeceEEecHHHHHHHHHhCCCccEEEEEE
Confidence 99999999999998 2469999999999999999999999999999999999999999999999999988865
Q ss_pred eecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHH
Q 008389 486 RADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAK 555 (567)
Q Consensus 486 ~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~ 555 (567)
.. ...++.++++++...+.. ......++++.+++++||+|++|..+++++ ||+|+|||++|++|++.
T Consensus 4158 ~~-~~~~~~l~a~~~~~~~~~--~~~~~~~~l~~~l~~~Lp~ymvP~~~~~~~~lP~t~~GKidr~~L~~~ 4225 (4334)
T PRK05691 4158 QE-GVNGKHLVGYLVPHQTVL--AQGALLERIKQRLRAELPDYMVPLHWLWLDRLPLNANGKLDRKALPAL 4225 (4334)
T ss_pred ec-CCCCcEEEEEEeCCcccc--cchHHHHHHHHHHHhhCChhhcCcceeecccCCCCCCCcccHhhcCCC
Confidence 54 344678999998765531 222334678999999999999999999887 99999999999999865
|
|
| >PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-62 Score=503.35 Aligned_cols=450 Identities=23% Similarity=0.293 Sum_probs=380.8
Q ss_pred HHHHH-hhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCeeeec
Q 008389 22 PLWFL-DRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAV 100 (567)
Q Consensus 22 ~~~~l-~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i 100 (567)
+.+.+ .++++++|+++|+++.++.+||.||.++++++|..|.+.|+++||+|+++++|+++++++++||+++|++++|+
T Consensus 4 ~~~~~~~~~a~~~~~~~a~~~~~~~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~la~~~~G~~~v~~ 83 (458)
T PRK09029 4 FSDWPWRHWAQVRPQAIALRLNDEVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLALLQCGARVLPL 83 (458)
T ss_pred hhcChHHHHHHhCCCceeeecCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEEeec
Confidence 33333 56688999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHHHHHHh
Q 008389 101 NIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQ 180 (567)
Q Consensus 101 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 180 (567)
++..+.+++..+++.+++++++++.+.... .. +. .. ....
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~----~~----------~~-~~~~------------------------ 123 (458)
T PRK09029 84 NPQLPQPLLEELLPSLTLDFALVLEGENTF-SA----LT----------SL-HLQL------------------------ 123 (458)
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEcCcccch-hh----cc----------cc-cccc------------------------
Confidence 999999999999999999999988765321 00 00 00 0000
Q ss_pred cCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhhHHHHHHhhh
Q 008389 181 TGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAAL 260 (567)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~ 260 (567)
.. ........++++++++|||||||.||+|.++|+++..........+++..+++++..+|++|.+|+...+..+..
T Consensus 124 -~~--~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~ 200 (458)
T PRK09029 124 -VE--GAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLMPFTAQDSWLLSLPLFHVSGQGIVWRWLYA 200 (458)
T ss_pred -cc--ccCcccCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcCCCCccceEEEecCcHhhhhhHHHHHHHhC
Confidence 00 001112456789999999999999999999999999998888888899999999999999999998766666777
Q ss_pred cCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHHHhcCCeeeec
Q 008389 261 CGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQKGFHVTHT 340 (567)
Q Consensus 261 g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~i~~~ 340 (567)
|+++++.+. ..+++.+ .++|.+..+|+++..+...... ..++|.+++||+++++.+.+.+.+.+.++++.
T Consensus 201 G~~v~~~~~---~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~-----~~~l~~i~~gG~~~~~~~~~~~~~~g~~~~~~ 270 (458)
T PRK09029 201 GATLVVRDK---QPLEQAL--AGCTHASLVPTQLWRLLDNRSE-----PLSLKAVLLGGAAIPVELTEQAEQQGIRCWCG 270 (458)
T ss_pred CceEEeCCh---HHHHHHH--hhceeeecChHHHHHHHhcccc-----CCcceEEEECCCCCCHHHHHHHHHcCCcEecc
Confidence 777666543 4566777 3799999999999999876443 34689999999999999999998889999999
Q ss_pred cCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEecccccccccCCC
Q 008389 341 YGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNP 420 (567)
Q Consensus 341 YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~ 420 (567)
||+||++........ ....++|.|++++ .++|.+ |||+++|+.++.||++++
T Consensus 271 YG~tE~~~~~~~~~~-------------~~~~~~G~~~~~~-~~~i~~--------------gel~v~g~~~~~gY~~~~ 322 (458)
T PRK09029 271 YGLTEMASTVCAKRA-------------DGLAGVGSPLPGR-EVKLVD--------------GEIWLRGASLALGYWRQG 322 (458)
T ss_pred ccccccCcceeccCC-------------CCCCCCCCCCCCC-EEEEeC--------------CEEEEecCceeeeeecCc
Confidence 999999764432110 1124589999999 788864 899999999999999998
Q ss_pred ccchhcccCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeecCCCCCcceEEEE
Q 008389 421 KANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVT 500 (567)
Q Consensus 421 ~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~ 500 (567)
+.+.....+|||+|||+|+++ ||.+++.||++|+|+++|.+|+|.+||+.+.++|+|.+++|++.+++..|+.++++|+
T Consensus 323 ~~~~~~~~~~~~~TGD~~~~~-~g~l~~~gR~~d~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~ 401 (458)
T PRK09029 323 QLVPLVNDEGWFATRDRGEWQ-NGELTILGRLDNLFFSGGEGIQPEEIERVINQHPLVQQVFVVPVADAEFGQRPVAVVE 401 (458)
T ss_pred cccccccCCCccCCCCcEEEe-CCEEEEecccccceeeCCEEeCHHHHHHHHhcCCCcceEEEEccCCcccCceEEEEEE
Confidence 887666678999999999999 9999999999999999999999999999999999999999999999988999999998
Q ss_pred EcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHHHHcC
Q 008389 501 LKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKEMG 560 (567)
Q Consensus 501 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~ 560 (567)
...+ .+. ++++++++++|+.|++|..+.+++ +|+|++||++|+.|+++++...
T Consensus 402 ~~~~---~~~----~~l~~~~~~~l~~~~~P~~~~~~~~~p~t~~gKi~r~~L~~~~~~~~ 455 (458)
T PRK09029 402 SDSE---AAV----VNLAEWLQDKLARFQQPVAYYLLPPELKNGGIKISRQALKEWVAQQL 455 (458)
T ss_pred cCcc---cCH----HHHHHHHHhhchhccCCeEEEEecccccCcCCCcCHHHHHHHHHhcc
Confidence 6632 223 688999999999999999999888 9999999999999999988654
|
|
| >PRK13391 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-61 Score=504.14 Aligned_cols=494 Identities=26% Similarity=0.384 Sum_probs=402.3
Q ss_pred HhhhhhcCCCceeEEE--CCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCeeeecccc
Q 008389 26 LDRAATVHPTRTSVVH--GSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIR 103 (567)
Q Consensus 26 l~~~a~~~p~~~a~~~--~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~ 103 (567)
....++++|+++|+++ .++.+||+||.+++.++|+.|.+.|+++|++|+++++++++++++++||+++|++++++++.
T Consensus 3 ~~~~a~~~p~~~a~~~~~~~~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~~~l~~~ 82 (511)
T PRK13391 3 PGIHAQTTPDKPAVIMASTGEVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSH 82 (511)
T ss_pred hhhhHhhCCCceEEEecCCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccEEeccccc
Confidence 3467889999999987 46889999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHHHHHHhcCC
Q 008389 104 LNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGD 183 (567)
Q Consensus 104 ~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 183 (567)
++.+.+.++++.++++.++++........+...... .....+.+...... .....+.+.+....
T Consensus 83 ~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~ 146 (511)
T PRK13391 83 LTPAEAAYIVDDSGARALITSAAKLDVARALLKQCP-------GVRHRLVLDGDGEL---------EGFVGYAEAVAGLP 146 (511)
T ss_pred cCHHHHHHHHhccCCcEEEEchhhHHHHHHHHhcCC-------CceEEEEecCCCCC---------cccccHHHHhcCCC
Confidence 999999999999999999999877665544433222 22233333321110 11122333333211
Q ss_pred CCCCCCCCCCcCceEEEEecCCCCCCCCeeeec--cHHHHH---HHHHHHHHhccCCCcEEEEecCccchhhhHHHHHHh
Q 008389 184 PQFDWKPPQDEWQSIALGYTSGTTASPKGVVLS--HRGAYL---MSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLA 258 (567)
Q Consensus 184 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t--~~~l~~---~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~ 258 (567)
. ....+.++.++++|||||||.||+|.++ |.++.. ........+++..++++++..|++|.+++...+..+
T Consensus 147 ~----~~~~~~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~~~~~~ 222 (511)
T PRK13391 147 A----TPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLWGFRSDMVYLSPAPLYHSAPQRAVMLVI 222 (511)
T ss_pred C----CCCCCcccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhcCCCCCCeEEEcCCHHHHHHHHHHHHHH
Confidence 1 1112345678999999999999999964 555432 223344556788899999999999999998888888
Q ss_pred hhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCC--CCcCCCCchhhhhccCCCCCHHHHHHHHh-cCC
Q 008389 259 ALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSE--DTILPLPHVVHVNTAGAAPPPSVLHAMSQ-KGF 335 (567)
Q Consensus 259 ~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~--~~~~~l~~lr~i~~~G~~l~~~~~~~~~~-~~~ 335 (567)
..|+++++...+++..+++.++++++|++.++|+++..+.+.... .... ++++|.+++||+++++++.+.+.+ ++.
T Consensus 223 ~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~-~~~l~~~~~gg~~~~~~~~~~~~~~~g~ 301 (511)
T PRK13391 223 RLGGTVIVMEHFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVRDKYD-LSSLEVAIHAAAPCPPQVKEQMIDWWGP 301 (511)
T ss_pred HcCceEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCchhhcccCC-ccceeEEEEccCCCCHHHHHHHHHHcCC
Confidence 999999988888999999999999999999999999988865322 1223 789999999999999999999986 488
Q ss_pred eeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEeccccccc
Q 008389 336 HVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKG 415 (567)
Q Consensus 336 ~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~~g 415 (567)
.+++.||+||++++...... . .....+.+|.|+++. ++|+|.+ +.+++.| +.|||+++|+ ++.|
T Consensus 302 ~v~~~YG~tE~~~~~~~~~~--~--------~~~~~~~vG~~~~g~--~~i~d~~-~~~~~~g--~~Gel~~~g~-~~~g 365 (511)
T PRK13391 302 IIHEYYAATEGLGFTACDSE--E--------WLAHPGTVGRAMFGD--LHILDDD-GAELPPG--EPGTIWFEGG-RPFE 365 (511)
T ss_pred ceeeeeccccccceEEecCc--c--------ccccCCCcCCcccce--EEEECCC-CCCCCCC--CceEEEEecC-cceE
Confidence 99999999999765443211 0 112236789999984 7889876 8888887 7899999999 8889
Q ss_pred ccCCCccchhccc--CCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeecCCCCC
Q 008389 416 YLKNPKANEETFA--NGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGE 493 (567)
Q Consensus 416 y~~~~~~~~~~~~--~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~ 493 (567)
|+++++.+...|. ++||+|||+|+++++|.+++.||.+|+++++|.++++.+||+++.+++.|.+++|++.++...|+
T Consensus 366 y~~~~~~~~~~~~~~~~w~~TGD~g~~~~~g~l~~~gR~~~~i~~~G~~v~~~eie~~l~~~~~v~~~~v~~~~~~~~g~ 445 (511)
T PRK13391 366 YLNDPAKTAEARHPDGTWSTVGDIGYVDEDGYLYLTDRAAFMIISGGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGE 445 (511)
T ss_pred EcCChhHhHHhhccCCCEEecCCEEEECCCccEEEeccCCCEEEeCCEEECHHHHHHHHHhCCCcceEEEEecCCcccCc
Confidence 9999988877764 48999999999999999999999999999999999999999999999999999999999988889
Q ss_pred cceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHHHH
Q 008389 494 SPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKE 558 (567)
Q Consensus 494 ~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~ 558 (567)
.++++++..++. ..+ +.+.++++++++++++.++.|..+.+++ +|+|++||++|+.|++.+..
T Consensus 446 ~~~~~~~~~~~~-~~~-~~~~~~l~~~~~~~l~~~~~P~~i~~~~~~P~t~~gKv~r~~l~~~~~~ 509 (511)
T PRK13391 446 EVKAVVQPVDGV-DPG-PALAAELIAFCRQRLSRQKCPRSIDFEDELPRLPTGKLYKRLLRDRYWG 509 (511)
T ss_pred eeEEEEEECCCC-Ccc-cchHHHHHHHHHhhcccCcCCcEEEEeecCCCCCccceeHHHHHHHhhc
Confidence 999999877654 211 2234789999999999999999999887 99999999999999998864
|
|
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-61 Score=533.20 Aligned_cols=491 Identities=16% Similarity=0.185 Sum_probs=379.0
Q ss_pred hcccCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCe
Q 008389 17 YMALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAV 96 (567)
Q Consensus 17 ~~~~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~ 96 (567)
...+|+.++|+++++++||++|+++.++++||+||+++++++|+.|.+.|+++||+|+|+++|++++++++|||+++|++
T Consensus 444 ~~~~sl~~ll~~~a~~~pd~~Al~~~~~~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~lA~~~aGav 523 (994)
T PRK07868 444 HTRISLGRIIAEQARDAPKGEFLLFDGRVHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSALVAIAALSRLGAV 523 (994)
T ss_pred CCCccHHHHHHHHHHHCCCCeEEEeCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCE
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHHH
Q 008389 97 LNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYE 176 (567)
Q Consensus 97 ~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 176 (567)
++|++|. .++.++++.++++++|++.+..+.+.. ....++.++...... ...........++
T Consensus 524 ~vpl~p~---~~l~~il~~s~~~~li~~~~~~~~~~~-------------~~~~iiv~~~~~~~~--~~~~~~~~~~~~~ 585 (994)
T PRK07868 524 AVLMPPD---TDLAAAVRLGGVTEIITDPTNLEAARQ-------------LPGRVLVLGGGESRD--LDLPDDADVIDME 585 (994)
T ss_pred EEEeCCc---hhHHHHHhccCCeEEEEChHHHHHHHh-------------cCceEEEecCCcccc--ccCCcchhhhhhh
Confidence 9999985 678999999999999998776554322 123455554321100 0000000011111
Q ss_pred HHHhcCCCCCCC--CCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhhHHH
Q 008389 177 KFLQTGDPQFDW--KPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYT 254 (567)
Q Consensus 177 ~~l~~~~~~~~~--~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~ 254 (567)
+..........+ ..+..++++++|+|| ||||.||++.++|.++..........+++..+|++++.+|++|.+|+...
T Consensus 586 ~~~~~~~~~~~~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~~l~~~d~~L~~~Pl~h~~gl~~~ 664 (994)
T PRK07868 586 KIDPDAVELPGWYRPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAAALDRRDTVYCLTPLHHESGLLVS 664 (994)
T ss_pred hcCcccccCCcccCCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhcCCCCCCeEEEecChHHHhHHHHH
Confidence 111110000000 112235789999998 68888888888887766555455556788999999999999999999887
Q ss_pred HHHhhhcCeeEEe-ccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHHHhc
Q 008389 255 WSLAALCGTSICL-RQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQK 333 (567)
Q Consensus 255 ~~~~~~g~~~~~~-~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~ 333 (567)
+..++.+|+.+++ ..+++..+++.|+++++|++.++|+++..|++........ ++++|.++ |+.+++++.+.+.+.
T Consensus 665 l~~~l~gG~~vvl~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~~~~~~-~~slr~~~--g~gl~~~l~~~~~~~ 741 (994)
T PRK07868 665 LGGAVVGGSRIALSRGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPAFVLHG-NHPVRLFI--GSGMPTGLWERVVEA 741 (994)
T ss_pred HHHHhccceEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCCccCC-CCceEEEe--cCCCCHHHHHHHHHH
Confidence 7777787776665 5689999999999999999999999999998764332223 67888765 345999999998864
Q ss_pred -C-CeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEe--eC--------CCC--CccCCCC
Q 008389 334 -G-FHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVI--DT--------RTQ--QPVPADG 399 (567)
Q Consensus 334 -~-~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~--d~--------~~~--~~~~~~~ 399 (567)
+ +++++.||+||++...... . ....+++|+|+|++..++|. |+ +.| +.++.|
T Consensus 742 ~~~~~l~~~YG~TE~~~~~~~~---~----------~~~~~svG~p~pg~~~v~i~~~d~~~g~li~d~~G~~~~~~~g- 807 (994)
T PRK07868 742 FAPAHVVEFFATTDGQAVLANV---S----------GAKIGSKGRPLPGAGRVELAAYDPEHDLILEDDRGFVRRAEVN- 807 (994)
T ss_pred hCchheeeeeeccccccccccc---C----------CCCCcccCCccCCCCceeEEEecCcCCceeecCCceEEEcCCC-
Confidence 4 7899999999976433211 0 02346899999997445543 21 224 445556
Q ss_pred CceEEEEEecccccccccCCCccch--hcc--cCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcC
Q 008389 400 KTIGEIVMSGNVVMKGYLKNPKANE--ETF--ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLH 475 (567)
Q Consensus 400 ~~~Gei~v~~~~~~~gy~~~~~~~~--~~~--~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~ 475 (567)
+.|||+++++... ++..+. ..| .+|||+|||+|++|+||+|+++||.||+||++|.+|+|.|||++|.+|
T Consensus 808 -e~Gel~~~~~~~~-----~p~~t~~~~~~~~~dgw~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~EIE~~L~~h 881 (994)
T PRK07868 808 -EVGVLLARARGPI-----DPTASVKRGVFAPADTWISTEYLFRRDDDGDYWLVDRRGSVIRTARGPVYTEPVTDALGRI 881 (994)
T ss_pred -CceEEEEecCCCC-----ChhhhhHhcccccCCEEEeccceEEEcCCCCEEEeccCCCEEEeCCceEcHHHHHHHHhcC
Confidence 7899999987532 232221 123 379999999999999999999999999999999999999999999999
Q ss_pred CCceeeEEEEeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHH
Q 008389 476 PAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRA 554 (567)
Q Consensus 476 ~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~ 554 (567)
|+|.+++|++.+++. ++.++++|+++++. ..+. ++|++++++ ++.|++|+.|++++ ||+|++||++|++|++
T Consensus 882 p~V~~aaVvg~~d~~-~~~~~a~Vv~~~~~-~~~~----~~L~~~l~~-l~~y~vP~~i~~v~~lP~T~sGKi~r~~L~~ 954 (994)
T PRK07868 882 GGVDLAVTYGVEVGG-RQLAVAAVTLRPGA-AITA----ADLTEALAS-LPVGLGPDIVHVVPEIPLSATYRPTVSALRA 954 (994)
T ss_pred CCeeEEEEEeecCCC-CceEEEEEEeCCCC-cCCH----HHHHHHHHh-CCCCcCCeEEEEeCCCCCCccccEehHHHHh
Confidence 999999999998875 68899999988765 4445 678888886 99999999999988 9999999999999987
Q ss_pred HH
Q 008389 555 KA 556 (567)
Q Consensus 555 ~~ 556 (567)
..
T Consensus 955 ~~ 956 (994)
T PRK07868 955 AG 956 (994)
T ss_pred cC
Confidence 64
|
|
| >PRK12582 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-61 Score=514.47 Aligned_cols=497 Identities=16% Similarity=0.153 Sum_probs=375.4
Q ss_pred ccCHHHHHhhhhhcCCCceeEEECC------ccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhh
Q 008389 19 ALTPLWFLDRAATVHPTRTSVVHGS------TRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPM 92 (567)
Q Consensus 19 ~~t~~~~l~~~a~~~p~~~a~~~~~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~ 92 (567)
..|+.++|+++++++||++|+++.+ +++||+||.++++++|+.|.+.|+++||+|+++++|++++++++|||++
T Consensus 48 ~~~l~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~ 127 (624)
T PRK12582 48 PRSIPHLLAKWAAEAPDRPWLAQREPGHGQWRKVTYGEAKRAVDALAQALLDLGLDPGRPVMILSGNSIEHALMTLAAMQ 127 (624)
T ss_pred ccCHHHHHHHHHHHCCCchheecccCCCCceEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHH
Confidence 6789999999999999999998753 6899999999999999999999999999999999999999999999999
Q ss_pred cCCeeeeccccCCh-----HHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhc
Q 008389 93 AGAVLNAVNIRLNA-----PTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYA 167 (567)
Q Consensus 93 ~G~~~v~i~~~~~~-----~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 167 (567)
+|++++|++|.++. +++.++++.++++++|++.... .......+.. ....++.+.....
T Consensus 128 ~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~~~~~~~~~------~~~~~i~~~~~~~-------- 191 (624)
T PRK12582 128 AGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAP--FARALAALDL------LDVTVVHVTGPGE-------- 191 (624)
T ss_pred cCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHH--HHHHHHhhhh------cCceEEEEcCCCc--------
Confidence 99999999999885 8999999999999999976421 1111111110 1122344332110
Q ss_pred cCCChHHHHHHHhcCCCCC-C-CCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCC---CcEEEEe
Q 008389 168 LGRGAVEYEKFLQTGDPQF-D-WKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNE---GAVYLWT 242 (567)
Q Consensus 168 ~~~~~~~~~~~l~~~~~~~-~-~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~---~d~~~~~ 242 (567)
......+.++........ . ......++++++|+|||||||.||+|.+||+++..+.......+.... .++++..
T Consensus 192 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 270 (624)
T PRK12582 192 -GIASIAFADLAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPPVSLDW 270 (624)
T ss_pred -ccccccHHHHhhcCCcchhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHHHHHhccccCCCCCceEEEe
Confidence 112234555544322110 0 011245688999999999999999999999999887766655554443 5799999
Q ss_pred cCccchhhhHHHHHH-hhhcCeeEEec-cCC---HHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCC----cCCCCchh
Q 008389 243 LPMFHCNGWCYTWSL-AALCGTSICLR-QVT---AKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDT----ILPLPHVV 313 (567)
Q Consensus 243 ~p~~~~~g~~~~~~~-~~~g~~~~~~~-~~~---~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~----~~~l~~lr 313 (567)
+|++|.+|+...+.. +..|+++++.. .++ ...+++.++++++|++.++|+++..|++...... .. ++++|
T Consensus 271 lPl~h~~g~~~~~~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~-~~slr 349 (624)
T PRK12582 271 MPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLAEAMEKDDALRRSF-FKNLR 349 (624)
T ss_pred chHHHHHhHHHHHHHHHhCceEEEEcCCCcccchHHHHHHHHHhcCCeEEeccCHHHHHHHHHHhhCHHHHHHH-hhhee
Confidence 999999998765554 45566665543 233 3456788899999999999999999876432211 12 67899
Q ss_pred hhhccCCCCCHHHHHHHHhc-------CCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeE
Q 008389 314 HVNTAGAAPPPSVLHAMSQK-------GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDV 386 (567)
Q Consensus 314 ~i~~~G~~l~~~~~~~~~~~-------~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i 386 (567)
.+++||+++++++.+++.+. ++++++.||+||+++++...... ....+++|.|+|++ +++|
T Consensus 350 ~i~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~-----------~~~~~svG~p~pg~-~v~i 417 (624)
T PRK12582 350 LMAYGGATLSDDLYERMQALAVRTTGHRIPFYTGYGATETAPTTTGTHWD-----------TERVGLIGLPLPGV-ELKL 417 (624)
T ss_pred EEEecCCCCCHHHHHHHHHHHHhhcCCCceEEeccccccccceeecccCC-----------CCCCCCCCcCCCCc-EEEE
Confidence 99999999999999998864 36899999999997655422110 12347899999999 7888
Q ss_pred eeCCCCCccCCCCCceEEEEEecccccccccCCCccchhcc-cCCccccCceEEE-e---CCCcEEEeccccceee-eCc
Q 008389 387 IDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETF-ANGWYHTGDLGVK-H---PDNYIEIKDRSKDIII-SGG 460 (567)
Q Consensus 387 ~d~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~-~---~~g~l~~~GR~~d~i~-~~G 460 (567)
++. | +.|||+++|++++.|||++++.+.+.| .+|||+|||+|++ + ++|++++.||.+|+|+ .+|
T Consensus 418 ~~~--------G--~~GEl~vrg~~v~~GY~~~p~~t~~~f~~dgw~~TGDlg~~~d~~~~~g~l~i~GR~~d~i~~~~G 487 (624)
T PRK12582 418 APV--------G--DKYEVRVKGPNVTPGYHKDPELTAAAFDEEGFYRLGDAARFVDPDDPEKGLIFDGRVAEDFKLSTG 487 (624)
T ss_pred ccC--------C--CceEEEEECCcccccccCCccchhhhcCccCCccccceEEecCCcCCCCceEEeccchhhEecCCC
Confidence 642 3 689999999999999999999998888 5899999999998 4 4699999999999999 689
Q ss_pred eecchHHHH--HHHhcCCCceeeEEEEeecCCCCCcceEEEEEcCCc------c-------chhhHHHHHHHH---HHHH
Q 008389 461 ENISSVEVE--NMMYLHPAVLEASVVARADERWGESPCAFVTLKPEV------D-------KSNEQQLAEDIM---KFCR 522 (567)
Q Consensus 461 ~~v~~~~iE--~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~------~-------~~~~~~~~~~l~---~~l~ 522 (567)
++|+|.+|| .++.++|.|.+++|++.+++. +.++|++.... . ..+.+++.+.++ +..+
T Consensus 488 ~~i~p~~iE~e~~l~~~p~V~~a~VvG~~~~~----~g~lv~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~ 563 (624)
T PRK12582 488 TWVSVGTLRPDAVAACSPVIHDAVVAGQDRAF----IGLLAWPNPAACRQLAGDPDAAPEDVVKHPAVLAILREGLSAHN 563 (624)
T ss_pred cEechHHHHHHHHHhcCcchheEEEEcCCCCc----EEEEEecCHHHHHHHHhcCCCCHHHHhcCHHHHHHHHHHHHHHH
Confidence 999998885 678899999999999998776 44554432211 0 012223333333 3334
Q ss_pred hcCCCCC-CCceeecCc-cc------CCCCccccHHHHHHHHHHc
Q 008389 523 AKMPAYW-VPKSIVFGP-LP------KTATGKIQKHVLRAKAKEM 559 (567)
Q Consensus 523 ~~l~~~~-~p~~i~~~~-lP------~t~~GKi~r~~l~~~~~~~ 559 (567)
+.++.+. +|..+.+.+ .| +|++||++|+...+.|.+.
T Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~~R~~~~~~y~~~ 608 (624)
T PRK12582 564 AEAGGSSSRIARALLMTEPPSIDAGEITDKGYINQRAVLERRAAL 608 (624)
T ss_pred hhcCCChhheEEEEEeCCCCCccCCcCCccccccHHHHHHHHHHH
Confidence 4577777 999988776 65 5678889999998888764
|
|
| >PRK08276 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-61 Score=499.99 Aligned_cols=484 Identities=27% Similarity=0.375 Sum_probs=396.2
Q ss_pred eeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCeeeeccccCChHHHHHHHhcc
Q 008389 37 TSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHS 116 (567)
Q Consensus 37 ~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~ 116 (567)
.++.+.++.+||.||.+++.++|+.|.+.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.+
T Consensus 3 ~~~~~~~~~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~ 82 (502)
T PRK08276 3 VIMAPSGEVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDS 82 (502)
T ss_pred eEecCCCcEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcC
Confidence 45666789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHHHHHHhcCCCCCCCCCCCCcCc
Q 008389 117 ASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQ 196 (567)
Q Consensus 117 ~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 196 (567)
++++++++....+.+.+....... ....++..... ......+.+........ .....++
T Consensus 83 ~~~~ii~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~----~~~~~~~ 141 (502)
T PRK08276 83 GAKVLIVSAALADTAAELAAELPA------GVPLLLVVAGP-----------VPGFRSYEEALAAQPDT----PIADETA 141 (502)
T ss_pred CCCEEEEccchhhHHHHHhhhccc------cccEEEEeCCC-----------CCccccHHHHHhcCCCC----CCCCCCc
Confidence 999999998776655543322210 12223332211 01223444444332211 1234567
Q ss_pred eEEEEecCCCCCCCCeeeeccHHHHHHHH------HHHHHhccCCCcEEEEecCccchhhhHHHHHHhhhcCeeEEeccC
Q 008389 197 SIALGYTSGTTASPKGVVLSHRGAYLMSL------SVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAALCGTSICLRQV 270 (567)
Q Consensus 197 ~~~i~~TSGtTG~pK~v~~t~~~l~~~~~------~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~~ 270 (567)
.++++|||||||.||+|.++|.++..... ..........++++++..|++|..++...+.+...|+++++.+.+
T Consensus 142 ~a~i~~TSGtTG~PK~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~ 221 (502)
T PRK08276 142 GADMLYSSGTTGRPKGIKRPLPGLDPDEAPGMMLALLGFGMYGGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVVMEKF 221 (502)
T ss_pred ceEEEECCCCCCCCceEEEccCCcchhhhhHHhhhhhhhcccCCCCCEEEEcCcHHHHHHHHHHHHHHhccceEEEcCCC
Confidence 89999999999999999999877543321 111122235678999999999999988888888888888888788
Q ss_pred CHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCC--CCcCCCCchhhhhccCCCCCHHHHHHHHhc-CCeeeeccCCccCc
Q 008389 271 TAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSE--DTILPLPHVVHVNTAGAAPPPSVLHAMSQK-GFHVTHTYGLSETY 347 (567)
Q Consensus 271 ~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~--~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~-~~~i~~~YG~tE~~ 347 (567)
++..+++.++++++|++.++|+++..+++.... ...+ ++++|.++++|++++.++.+++.+. +.++++.||+||++
T Consensus 222 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~-~~~lr~i~~~g~~~~~~~~~~~~~~~~~~~~~~yG~tE~~ 300 (502)
T PRK08276 222 DAEEALALIERYRVTHSQLVPTMFVRMLKLPEEVRARYD-VSSLRVAIHAAAPCPVEVKRAMIDWWGPIIHEYYASSEGG 300 (502)
T ss_pred CHHHHHHHHHHhCCeEEEehHHHHHHHHhCccccCCCCC-cccceEEEecCCCCCHHHHHHHHHHhCcHhhhhccccccc
Confidence 999999999999999999999999999876532 2233 7899999999999999999999864 88899999999998
Q ss_pred CCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEecccccccccCCCccchhcc
Q 008389 348 GPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETF 427 (567)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~ 427 (567)
+++...... .....+.+|.|+ ++ .++|+|++ +.+++.+ +.|||+++|+.++.||+++++.+...|
T Consensus 301 ~~~~~~~~~----------~~~~~~~~G~~~-~~-~~~i~d~~-~~~~~~g--~~Gel~v~~~~~~~gy~~~~~~~~~~~ 365 (502)
T PRK08276 301 GVTVITSED----------WLAHPGSVGKAV-LG-EVRILDED-GNELPPG--EIGTVYFEMDGYPFEYHNDPEKTAAAR 365 (502)
T ss_pred ceeEecCcc----------ccccCCCcceec-cc-EEEEECCC-CCCCcCC--CceEEEEECCCccchhcCCHHHHHHHh
Confidence 755432211 112236789999 77 79999965 8888877 789999999999999999999888888
Q ss_pred cC-CccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeecCCCCCcceEEEEEcCCcc
Q 008389 428 AN-GWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVD 506 (567)
Q Consensus 428 ~~-g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~ 506 (567)
.+ +||+|||+|+++++|.+++.||.+|+++++|.++++.+||..+.++|+|.++++++..++..++.++++++.+++..
T Consensus 366 ~~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~iE~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~ 445 (502)
T PRK08276 366 NPHGWVTVGDVGYLDEDGYLYLTDRKSDMIISGGVNIYPQEIENLLVTHPKVADVAVFGVPDEEMGERVKAVVQPADGAD 445 (502)
T ss_pred cCCCceeecceEEEcCCcCEEEeccCcceEEeCCEEeCHHHHHHHHHhCCCcceEEEEeCCCcccCceEEEEEEECCCCC
Confidence 55 99999999999999999999999999999999999999999999999999999999999888899999999887642
Q ss_pred chhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHHHHc
Q 008389 507 KSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKEM 559 (567)
Q Consensus 507 ~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~ 559 (567)
. .+.+.+++++.++++++.++.|..+++++ +|+|++||++|+.|++.+.+.
T Consensus 446 -~-~~~~~~~i~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~ 497 (502)
T PRK08276 446 -A-GDALAAELIAWLRGRLAHYKCPRSIDFEDELPRTPTGKLYKRRLRDRYWEG 497 (502)
T ss_pred -C-ChhhHHHHHHHHHhhccCCCCCcEEEEecCCCCCcccchhHHHHHHHHHhh
Confidence 1 22334688999999999999999999888 999999999999999998765
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-61 Score=602.05 Aligned_cols=491 Identities=19% Similarity=0.255 Sum_probs=414.0
Q ss_pred cccchhhhcccCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHh
Q 008389 10 LPKNAANYMALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFG 89 (567)
Q Consensus 10 ~~~~~~~~~~~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA 89 (567)
|.......++.++.++|++++..+|+++|+++.++++||+||.+++.++|+.|.+.|+++|++|++++++++++++++||
T Consensus 1121 ~~~~~~~~~~~~l~~~~~~~a~~~p~~~Al~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~s~~~iv~~la 1200 (4334)
T PRK05691 1121 WGQAPCAPAQAWLPELLNEQARQTPERIALVWDGGSLDYAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQLLVGLLA 1200 (4334)
T ss_pred ccCCCCCCccCCHHHHHHHHHHhCCCCeEEEECCceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 33333444567899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCeeeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccC
Q 008389 90 VPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALG 169 (567)
Q Consensus 90 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 169 (567)
|+++|++++|++|.++.+++.++++.++++++|++......+... .....+.++....
T Consensus 1201 ilkaG~~~vpld~~~p~~rl~~il~~~~~~~vi~~~~~~~~~~~~------------~~~~~~~~~~~~~---------- 1258 (4334)
T PRK05691 1201 ILKAGGAYVPLDPDYPAERLAYMLADSGVELLLTQSHLLERLPQA------------EGVSAIALDSLHL---------- 1258 (4334)
T ss_pred HHHhCCEEEecCcCChHHHHHHHHHhcCCCEEEecchhhhhcccc------------cCceEEeeccccc----------
Confidence 999999999999999999999999999999999987654332110 0111222211100
Q ss_pred CChHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchh
Q 008389 170 RGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCN 249 (567)
Q Consensus 170 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~ 249 (567)
...+...+.....++++++++|||||||.||||.++|+++.+.+.+....++++++|+++...|++|..
T Consensus 1259 -----------~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~ 1327 (4334)
T PRK05691 1259 -----------DSWPSQAPGLHLHGDNLAYVIYTSGSTGQPKGVGNTHAALAERLQWMQATYALDDSDVLMQKAPISFDV 1327 (4334)
T ss_pred -----------cccCCCCCCCCCCCCCeEEEEEcCCCCCCCceeEeecHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHH
Confidence 000001111234568999999999999999999999999999998888889999999999999999988
Q ss_pred hhHHHHHHhhhcCeeEEec---cCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHH
Q 008389 250 GWCYTWSLAALCGTSICLR---QVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSV 326 (567)
Q Consensus 250 g~~~~~~~~~~g~~~~~~~---~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~ 326 (567)
++...+.+++.|+++++.. ..++..+++.++++++|++.++|++++.+....... . ++++|.+++|||++++++
T Consensus 1328 s~~~~~~~L~~G~~l~i~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~--~-~~~lr~~~~gGe~l~~~~ 1404 (4334)
T PRK05691 1328 SVWECFWPLITGCRLVLAGPGEHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEPLAA--A-CTSLRRLFSGGEALPAEL 1404 (4334)
T ss_pred HHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEECcHHHHHHHHhCcccc--c-CCcccEEEEeecCCCHHH
Confidence 8888888889999998874 368899999999999999999999999998653322 2 789999999999999999
Q ss_pred HHHHHhc--CCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEE
Q 008389 327 LHAMSQK--GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGE 404 (567)
Q Consensus 327 ~~~~~~~--~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Ge 404 (567)
.+.+.+. ++++++.||+||++..++....... ......+|.|++++ .+.|+|++ ++++|.| +.||
T Consensus 1405 ~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~---------~~~~~~iG~p~~~~-~~~i~d~~-~~~vp~G--~~GE 1471 (4334)
T PRK05691 1405 RNRVLQRLPQVQLHNRYGPTETAINVTHWQCQAE---------DGERSPIGRPLGNV-LCRVLDAE-LNLLPPG--VAGE 1471 (4334)
T ss_pred HHHHHHhCCCcEEEeCCCcChheeeeeeeecccc---------cCCCCcccceeCCC-EEEEECCC-CCCCCCC--CceE
Confidence 9999854 6899999999999765543221110 11235789999999 89999987 8999998 8999
Q ss_pred EEEecccccccccCCCccchhccc--------CCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCC
Q 008389 405 IVMSGNVVMKGYLKNPKANEETFA--------NGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHP 476 (567)
Q Consensus 405 i~v~~~~~~~gy~~~~~~~~~~~~--------~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~ 476 (567)
|+|+|+.+++||+++++.+...|. .+||+|||+|++++||.++++||.|++||++|.+|+|.|||.+|.++|
T Consensus 1472 L~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~dG~l~~~GR~d~qiki~G~rie~~eIE~~l~~~~ 1551 (4334)
T PRK05691 1472 LCIGGAGLARGYLGRPALTAERFVPDPLGEDGARLYRTGDRARWNADGALEYLGRLDQQVKLRGFRVEPEEIQARLLAQP 1551 (4334)
T ss_pred EEecCcccchhhcCCccccHhhCCCCCCCCCCceEEEccceEEECCCCCEEEecccCcEEEECCEEcCHHHHHHHHHhCC
Confidence 999999999999999999998883 249999999999999999999999999999999999999999999999
Q ss_pred CceeeEEEEeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHH
Q 008389 477 AVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAK 555 (567)
Q Consensus 477 ~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~ 555 (567)
+|.+++|++..+.. +..++++++...+. ..+. ++++++++++||.|++|..+++++ +|+|++||++|++|++.
T Consensus 1552 ~V~~a~v~~~~~~~-~~~lva~~~~~~~~-~~~~----~~l~~~l~~~Lp~y~vP~~~~~~~~lP~t~~GKidr~~L~~~ 1625 (4334)
T PRK05691 1552 GVAQAAVLVREGAA-GAQLVGYYTGEAGQ-EAEA----ERLKAALAAELPEYMVPAQLIRLDQMPLGPSGKLDRRALPEP 1625 (4334)
T ss_pred CcceEEEEEeeCCC-CCEEEEEEEeCCCC-CCCH----HHHHHHHHHhCccccCCcEEEEccccCCCCCCCcChhhcCcc
Confidence 99999998766543 57899999876654 3333 589999999999999999999888 99999999999999764
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-60 Score=542.85 Aligned_cols=498 Identities=21% Similarity=0.217 Sum_probs=397.4
Q ss_pred ccCHHHHHhhhhhcCC-CceeEEE-CCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCe
Q 008389 19 ALTPLWFLDRAATVHP-TRTSVVH-GSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAV 96 (567)
Q Consensus 19 ~~t~~~~l~~~a~~~p-~~~a~~~-~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~ 96 (567)
+.++.+.+.+.++++| ++.|+.+ .++++||+||+++++++|+.|++ |+++||+|+++++|+++++++++||+++|++
T Consensus 630 ~~~~~~~l~~~~~~~~~~~~ai~~~~~~~~Ty~el~~~~~~lA~~L~~-g~~~gd~V~i~~~n~~~~~~~~la~~~~G~v 708 (1140)
T PRK06814 630 DRTLFEALIEAAKIHGFKKLAVEDPVNGPLTYRKLLTGAFVLGRKLKK-NTPPGENVGVMLPNANGAAVTFFALQSAGRV 708 (1140)
T ss_pred cCCHHHHHHHHHHHcCCCCeEeECCCCCccCHHHHHHHHHHHHHHHHh-cCCCCCeEEEEcCCchHHHHHHHHHHHCCCE
Confidence 5788889988888886 5677776 36899999999999999999975 9999999999999999999999999999999
Q ss_pred eeeccccCChHHHHHHHhccCceEEEEcccchHHHH--HHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHH
Q 008389 97 LNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAE--EALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVE 174 (567)
Q Consensus 97 ~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 174 (567)
++|+++..+.+++.++++++++++++++++..+... .....+. ....++.+++..... .....
T Consensus 709 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~--------~~~~~ 773 (1140)
T PRK06814 709 PAMINFSAGIANILSACKAAQVKTVLTSRAFIEKARLGPLIEALE-------FGIRIIYLEDVRAQI--------GLADK 773 (1140)
T ss_pred EEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhcchhHHHHhc-------cCceEEEehHhhccC--------ChHHH
Confidence 999999999999999999999999999876544321 1111111 223444444321000 00111
Q ss_pred HHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhhHH-
Q 008389 175 YEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCY- 253 (567)
Q Consensus 175 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~- 253 (567)
+.+......+.. ......++++++++|||||||.||+|.++|+++.++.......++++++|++++.+|++|..|+..
T Consensus 774 ~~~~~~~~~~~~-~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~ 852 (1140)
T PRK06814 774 IKGLLAGRFPLV-YFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPEDKVFNALPVFHSFGLTGG 852 (1140)
T ss_pred HHHHhhccCCcc-ccCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhhCCCCcCEEEEecchHHHHHHHHH
Confidence 222222221111 111346789999999999999999999999999998888888889999999999999999999854
Q ss_pred HHHHhhhcCeeEEecc-CCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHHHh
Q 008389 254 TWSLAALCGTSICLRQ-VTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQ 332 (567)
Q Consensus 254 ~~~~~~~g~~~~~~~~-~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~ 332 (567)
.+..+..|++.++.+. .+...+.+.++++++|++.++|++++.+.+... ..+ ++++|.+++||+++++++.+.+.+
T Consensus 853 ~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~--~~~-~~~lr~v~~gg~~l~~~~~~~~~~ 929 (1140)
T PRK06814 853 LVLPLLSGVKVFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARYAH--PYD-FRSLRYVFAGAEKVKEETRQTWME 929 (1140)
T ss_pred HHHHHHcCCEEEEecCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhhcc--ccc-ccceeEEEEcCCcCCHHHHHHHHH
Confidence 4445566777766653 567788999999999999999999999887532 223 789999999999999999999885
Q ss_pred -cCCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEeccc
Q 008389 333 -KGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNV 411 (567)
Q Consensus 333 -~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~ 411 (567)
.++++++.||+||++..+..+... ....+++|.|+|++ ++++.+.+ + .+ +.|||+++|++
T Consensus 930 ~~~~~~~~~YG~TE~~~~~~~~~~~-----------~~~~~~vG~p~~g~-~~~~~~~~-~----~~--~~Gel~v~g~~ 990 (1140)
T PRK06814 930 KFGIRILEGYGVTETAPVIALNTPM-----------HNKAGTVGRLLPGI-EYRLEPVP-G----ID--EGGRLFVRGPN 990 (1140)
T ss_pred HhCCcEEeccccccccceEEecCCC-----------CCCCCcCCccCCCC-eEEEeecC-C----CC--CceEEEEeCCC
Confidence 489999999999998765443211 11246899999999 79887754 2 12 67999999999
Q ss_pred ccccccCCCccch-hcccCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeecCC
Q 008389 412 VMKGYLKNPKANE-ETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADER 490 (567)
Q Consensus 412 ~~~gy~~~~~~~~-~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~ 490 (567)
++.||+++++... ..+.+|||+|||+|++|+||++++.||.||+||++|++|+|.|||+.+.+++.+.+++|++.+++.
T Consensus 991 ~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~ 1070 (1140)
T PRK06814 991 VMLGYLRAENPGVLEPPADGWYDTGDIVTIDEEGFITIKGRAKRFAKIAGEMISLAAVEELAAELWPDALHAAVSIPDAR 1070 (1140)
T ss_pred cchhhcCCCCCCccccCCCCeEecCCEEEECCCCeEEEEecccCeeeeCCEEECHHHHHHHHHhcCCcccEEEEEcccCC
Confidence 9999998765332 223689999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCcceEEEEEcCCccchhhHHHHHHHHHHHHhc-CCCCCCCceeecCc-ccCCCCccccHHHHHHHHHHcCCcc
Q 008389 491 WGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAK-MPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKEMGPVR 563 (567)
Q Consensus 491 ~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~-l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~~~~ 563 (567)
.|+.+++++. .. +.+. ++++++++++ ++++++|..+.+++ +|+|++||++|++|+++..+....+
T Consensus 1071 ~g~~~~~~~~-~~---~~~~----~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~~~ 1137 (1140)
T PRK06814 1071 KGERIILLTT-AS---DATR----AAFLAHAKAAGASELMVPAEIITIDEIPLLGTGKIDYVAVTKLAEEAAAKP 1137 (1140)
T ss_pred CCceEEEEEc-CC---CcCH----HHHHHHHHHcCCCcccCCcEEEEecCcCCCCCCCCcHHHHHHHHHHhhccc
Confidence 8888777654 11 2233 5777888864 99999999999888 9999999999999999988875544
|
|
| >PRK05850 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-61 Score=507.75 Aligned_cols=508 Identities=20% Similarity=0.246 Sum_probs=376.3
Q ss_pred cCHHHHHhhhhhcCCCceeEEECC---------ccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhh
Q 008389 20 LTPLWFLDRAATVHPTRTSVVHGS---------TRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGV 90 (567)
Q Consensus 20 ~t~~~~l~~~a~~~p~~~a~~~~~---------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~ 90 (567)
|++.++|++++..+|+++|+++.+ +++||+||..++.++|+.|.+.| .+||+|+++++|++++++++|||
T Consensus 1 ~s~~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~~g-~~gd~V~l~~~n~~~~~~~~lA~ 79 (578)
T PRK05850 1 SSVPSLLRERASLQPDDAAFTFIDYEQDPAGVAETLTWSQLYRRTLNVAEELRRHG-STGDRAVILAPQGLEYIVAFLGA 79 (578)
T ss_pred CcHHHHHHHHHhcCCCceEEEEEccCCCCCCceeeecHHHHHHHHHHHHHHHHHhC-CCCCEEEEEcCCcccHHHHHHHH
Confidence 478899999999999999998642 68999999999999999999999 68999999999999999999999
Q ss_pred hhcCCeeeeccc---cCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhc
Q 008389 91 PMAGAVLNAVNI---RLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYA 167 (567)
Q Consensus 91 ~~~G~~~v~i~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 167 (567)
+++|++++|+++ ..+.+++.++++.+++++++++++..+.+......... .....++.++....
T Consensus 80 ~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-------- 146 (578)
T PRK05850 80 LQAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQPG-----QSAPPVIEVDLLDL-------- 146 (578)
T ss_pred HHcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHHHHHHhhccc-----ccccceEeeccccc--------
Confidence 999999999997 45788999999999999999998876655443211110 01112222221100
Q ss_pred cCCChHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHH-hc-----cCCCcEEEE
Q 008389 168 LGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALI-WG-----MNEGAVYLW 241 (567)
Q Consensus 168 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~-~~-----~~~~d~~~~ 241 (567)
... .. ........+++++++|||||||.||+|.++|++++.++...... +. ...++++++
T Consensus 147 -----------~~~-~~--~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 212 (578)
T PRK05850 147 -----------DSP-RG--SDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVS 212 (578)
T ss_pred -----------ccC-Cc--cccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEE
Confidence 000 00 01122456899999999999999999999999998877665443 22 356889999
Q ss_pred ecCccchhhhHHH-HHHhhhcCeeEEecc----CCHHHHHHHHHhhCceEeeeCcHHHHHHH-cCCCC---CCcCCCCch
Q 008389 242 TLPMFHCNGWCYT-WSLAALCGTSICLRQ----VTAKAVYSAIAKYGVTHFCAAPVVLNSIV-NAPSE---DTILPLPHV 312 (567)
Q Consensus 242 ~~p~~~~~g~~~~-~~~~~~g~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~-~~~~~---~~~~~l~~l 312 (567)
.+|++|..|+... +.++..|+++++..+ .++..+++.++++++++. .+|.++..+. ..... .... ++++
T Consensus 213 ~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~-~~~l 290 (578)
T PRK05850 213 WLPFYHDMGLVLGVCAPILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFS-AAPNFAFELAVRKTSDDDMAGLD-LGGV 290 (578)
T ss_pred ECCCCCCchhHHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcchhhhcCcc-hhhh
Confidence 9999999998754 445566777666653 278999999999999865 5666544333 22111 1223 6789
Q ss_pred hhhhccCCCCCHHHHHHHHhc----C---CeeeeccCCccCcCCcccccCCCCCC--CCChhhh------------hhhh
Q 008389 313 VHVNTAGAAPPPSVLHAMSQK----G---FHVTHTYGLSETYGPSTVCAWKPEWD--SLPPETQ------------ARMK 371 (567)
Q Consensus 313 r~i~~~G~~l~~~~~~~~~~~----~---~~i~~~YG~tE~~~~~~~~~~~~~~~--~~~~~~~------------~~~~ 371 (567)
|.+++||+++++++.+++.+. + ..+++.||+||++..+.......... ....... ....
T Consensus 291 r~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~ 370 (578)
T PRK05850 291 LGIISGSERVHPATLKRFADRFAPFNLRETAIRPSYGLAEATVYVATREPGQPPESVRFDYEKLSAGHAKRCETGGGTPL 370 (578)
T ss_pred eeEEECcCCCCHHHHHHHHHHHHhcCcCcccccCccchhhhhhheeccCCCCCceEEEECHHHHhCCceEecCCCCCceE
Confidence 999999999999999888743 2 36899999999865443321110000 0000000 0011
Q ss_pred ccCCceeccccceeEeeCCCCCccCCCCCceEEEEEecccccccccCCCccchhccc------------CCccccCceEE
Q 008389 372 ARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFA------------NGWYHTGDLGV 439 (567)
Q Consensus 372 ~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~------------~g~~~TGDl~~ 439 (567)
..+|.|. +. +++|+|++++.+++.| +.|||+++|+.++.||+++++.+...|. +|||+|||+|+
T Consensus 371 ~~~g~p~-~~-~~~ivd~~~~~~~~~g--~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~ 446 (578)
T PRK05850 371 VSYGSPR-SP-TVRIVDPDTCIECPAG--TVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGF 446 (578)
T ss_pred EeccCCC-CC-EEEEEcCCCCcCCCCC--CEEEEEEecCcccccccCChhhhHHHhhcccccccccCCCCCeeeccceee
Confidence 2334432 34 7899998878889888 8999999999999999999999998883 47999999999
Q ss_pred EeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeecCCCCCcceEEEEEcCCccchhhH--HHHHHH
Q 008389 440 KHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQ--QLAEDI 517 (567)
Q Consensus 440 ~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~--~~~~~l 517 (567)
++ +|++++.||.+|+|+++|++|+|.+||+++.+++.+ +++|+++++. .++.++++|+++++. ..+.+ .....+
T Consensus 447 ~~-~G~l~~~GR~~d~i~~~G~~i~p~eIE~~l~~~~~~-~~~v~~v~~~-~~~~~~a~v~~~~~~-~~~~~~~~~~~~l 522 (578)
T PRK05850 447 IS-EGELFIVGRIKDLLIVDGRNHYPDDIEATIQEITGG-RVAAISVPDD-GTEKLVAIIELKKRG-DSDEEAMDRLRTV 522 (578)
T ss_pred EE-CCEEEEEcccccEEEECCeecCHHHHHHHHHHhcCC-cEEEEEecCC-CceEEEEEEEecccc-CcchhhhhhHHHH
Confidence 98 999999999999999999999999999999999985 5788888876 578899999988764 22221 123455
Q ss_pred HHHHHhcCCC--CCCCceeecC---cccCCCCccccHHHHHHHHHHcCCcccc
Q 008389 518 MKFCRAKMPA--YWVPKSIVFG---PLPKTATGKIQKHVLRAKAKEMGPVRKS 565 (567)
Q Consensus 518 ~~~l~~~l~~--~~~p~~i~~~---~lP~t~~GKi~r~~l~~~~~~~~~~~~~ 565 (567)
++.+.+.++. ...|..+.++ .||+|++||++|++|+++|.+...++..
T Consensus 523 ~~~v~~~l~~~~~~~~~~~~~~~~~~iP~t~~GKi~R~~l~~~~~~~~~~~~~ 575 (578)
T PRK05850 523 KREVTSAISKSHGLSVADLVLVAPGSIPITTSGKIRRAACVEQYRQDEFTRLD 575 (578)
T ss_pred HHHHHHHHHHHhCCCceEEEEeCCCCcCCCCCchHHHHHHHHHHHcCCccccc
Confidence 5555544432 2345555544 3999999999999999999988776653
|
|
| >KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-61 Score=458.61 Aligned_cols=519 Identities=22% Similarity=0.267 Sum_probs=430.4
Q ss_pred ccCHHHHHhhhhhcCCCceeEEECC-----------------------ccccHHHHHHHHHHHHHHHHHccCCCCCE-EE
Q 008389 19 ALTPLWFLDRAATVHPTRTSVVHGS-----------------------TRYTWLQTYQRCRRLASALCKRSIGLGCT-VA 74 (567)
Q Consensus 19 ~~t~~~~l~~~a~~~p~~~a~~~~~-----------------------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~-V~ 74 (567)
-.|+++++++..+.+.++.++.+++ .++||.|+..++.++|.+|.+.|++++++ ++
T Consensus 40 ~~Tl~~~~~~~~~k~g~~~~mGtR~li~~h~ek~~dGK~f~k~~Lg~Y~w~sy~ev~~~~~~~gsGL~~lG~k~~e~k~~ 119 (678)
T KOG1180|consen 40 ASTLYELFEECVKKFGKKDAMGTRELIKEHEEKQVDGKTFEKYELGDYKWMSYNEVYERVHNFGSGLVKLGLKPKETKIA 119 (678)
T ss_pred cccHHHHHHHHHHhcCCCccccHHHHHHHHhhccCCCeEEEEEeccceeeecHHHHHHHHHHHHHHHHHhCCCCCCCeEE
Confidence 4899999999999999999997632 67999999999999999999999998777 99
Q ss_pred EEcCChHHHHHHHHhhhhcCCeeeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEe
Q 008389 75 IIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVI 154 (567)
Q Consensus 75 l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 154 (567)
|++..+.+|+++++||++-+..+|-+...+..+.+.|-|++++++.+|++.+.++.+...++..+ ..+.+|.+
T Consensus 120 iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~~i~T~~~LL~kl~~~l~~~~-------~vk~II~~ 192 (678)
T KOG1180|consen 120 IFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETESTAIFTDSELLPKLKAPLKQAK-------TVKHIIYF 192 (678)
T ss_pred EEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccceEEEeCHHHHHHHHHHHhccC-------ceeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999988777766666 67888888
Q ss_pred cCCCCCc--ccchh--ccCCChHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHH
Q 008389 155 GDESCDP--KDLKY--ALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALI 230 (567)
Q Consensus 155 ~~~~~~~--~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~ 230 (567)
++.+... ++... .......+|++++..+.....+..+..++|+|.|+|||||||.||||+++|.|+++........
T Consensus 193 d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~~~~~~P~p~Dia~IMYTSGSTG~PKGVml~H~NiVA~~~G~~~~ 272 (678)
T KOG1180|consen 193 DPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENEIPPHPPKPSDIACIMYTSGSTGLPKGVMLTHSNIVAGVTGVGEN 272 (678)
T ss_pred cCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCCCCCCCCCCCceEEEEEcCCCCCCCceEEEecccHHhhhhhhccc
Confidence 7533222 22221 1245677899999998877666666688999999999999999999999999999999888776
Q ss_pred h-ccCCCcEEEEecCccchhhhHHHHHHhhhcCeeEEeccCCHHH--------HHHHHHhhCceEeeeCcHHHHHHHcCC
Q 008389 231 W-GMNEGAVYLWTLPMFHCNGWCYTWSLAALCGTSICLRQVTAKA--------VYSAIAKYGVTHFCAAPVVLNSIVNAP 301 (567)
Q Consensus 231 ~-~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~--------~~~~i~~~~~t~l~~~p~~~~~l~~~~ 301 (567)
. .+.+.|+++..+|+.|+..+.+-+.++..|+.+-+-++.+... ---.+..+|||++.++|..|+++.+..
T Consensus 273 v~~lg~~D~yi~yLPLAHIlEl~aE~~~ft~G~~iGY~S~~TLtdts~ki~kg~kGD~~~lkPTiM~~VpAV~drVrKgV 352 (678)
T KOG1180|consen 273 VPELGPKDRYIAYLPLAHILELTAELVCFTWGGRIGYSSPLTLTDTSSKIKKGCKGDLTELKPTIMAAVPAVMDRVRKGV 352 (678)
T ss_pred CcccCCCceEEEechHHHHHHHHHHHHHHhhCCEeecCCcceecccchhhccCCcCccccccchhhhhhHHHHHHHHHHH
Confidence 6 6889999999999999999999999999999877764432211 112456789999999999998876421
Q ss_pred CCC-----------------------------------------CcCCCCchhhhhccCCCCCHHHHHHHHhc-CCeeee
Q 008389 302 SED-----------------------------------------TILPLPHVVHVNTAGAAPPPSVLHAMSQK-GFHVTH 339 (567)
Q Consensus 302 ~~~-----------------------------------------~~~~l~~lr~i~~~G~~l~~~~~~~~~~~-~~~i~~ 339 (567)
..+ +.....+||.+++||++++++..+.+.-. .|++.+
T Consensus 353 l~kV~~~~~~~k~lF~~aY~~K~~~~~~~g~~s~~ld~lVFkKIr~~lGG~lR~~LsGGapLS~dtQrF~nic~C~Pv~q 432 (678)
T KOG1180|consen 353 LSKVNAMPGLQKKLFWTAYERKLSLIERNGPGSPLLDALVFKKIRALLGGNLRYILSGGAPLSPDTQRFMNICFCCPVLQ 432 (678)
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHhCCceEEEEeCCCCCCHHHHHHHHHhccccccc
Confidence 110 00114588999999999999999999965 779999
Q ss_pred ccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEecccccccccCC
Q 008389 340 TYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKN 419 (567)
Q Consensus 340 ~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~ 419 (567)
+||.||+.+..+..... ....+.+|.|++.+ +++++|-+.+...+.+....|||+++|++++.||+++
T Consensus 433 GYGLTEtca~~tv~e~~-----------d~~~g~vG~pl~c~-eiKLvdw~EgGY~~~~~PPrGEI~i~G~~vt~gY~kn 500 (678)
T KOG1180|consen 433 GYGLTETCAAATVLEPE-----------DFSTGRVGAPLPCC-EIKLVDWEEGGYFAKNKPPRGEILIGGPNVTMGYYKN 500 (678)
T ss_pred cccccchhcccEecChh-----------hcccccccCCccce-EEEEEEhhhcCccCCCCCCCceEEecCCccChhhhCC
Confidence 99999997776654321 23347899999999 8999998888888777656799999999999999999
Q ss_pred Cccchhcc--cCC--ccccCceEEEeCCCcEEEeccccceee-eCceecchHHHHHHHhcCCCceeeEEEEeecCCCCCc
Q 008389 420 PKANEETF--ANG--WYHTGDLGVKHPDNYIEIKDRSKDIII-SGGENISSVEVENMMYLHPAVLEASVVARADERWGES 494 (567)
Q Consensus 420 ~~~~~~~~--~~g--~~~TGDl~~~~~~g~l~~~GR~~d~i~-~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~ 494 (567)
++.+.+.| .+| ||+|||+|++++||+|.+++|.+|.+| .+|+.|+.+.||.+++..|.|...+|.+..... .
T Consensus 501 ~ekT~e~ft~~~G~~WF~TGDIGe~~pdG~LkIIDRKKdLVKlq~GEYIsL~KvEa~l~s~p~V~NICvyAd~~~s---~ 577 (678)
T KOG1180|consen 501 EEKTKEDFTVEDGQRWFRTGDIGEFHPDGCLKIIDRKKDLVKLQNGEYISLGKVEAALRSSPYVDNICVYADSNKS---K 577 (678)
T ss_pred hhhhhhhceecCCcEEEeccccceecCCCcEEEeechhhhhhhcccceeehHHHHHHHhcCcchhheEEecccccc---e
Confidence 99999999 378 999999999999999999999999999 999999999999999999999999998887654 5
Q ss_pred ceEEEEEcCCcc----------chhh----------HHHHHHHHHHH-HhcCCCCCCCceeecCcccCC-------CCcc
Q 008389 495 PCAFVTLKPEVD----------KSNE----------QQLAEDIMKFC-RAKMPAYWVPKSIVFGPLPKT-------ATGK 546 (567)
Q Consensus 495 ~~~~v~~~~~~~----------~~~~----------~~~~~~l~~~l-~~~l~~~~~p~~i~~~~lP~t-------~~GK 546 (567)
++++||++.+.. ..+. .++.++|.+.- .++|....+|..|++.+.|=| ..=|
T Consensus 578 ~VaiVVPn~~~lt~lA~k~Gi~~~~~e~lc~d~k~~~~v~k~L~~~ak~~~L~~iEip~~I~l~~e~WTPenGlvT~A~K 657 (678)
T KOG1180|consen 578 PVAIVVPNQKHLTKLAEKAGISGSTWEELCEDKKVVKAVLKELIEAAKSQKLERIEIPAKIVLSPEPWTPENGLVTAALK 657 (678)
T ss_pred eEEEEcCCchHHHHHHHHcCCChhhHHHHhccHHHHHHHHHHHHHHHHhcccccccccceeEecCCCcCCCccccHHHHH
Confidence 999999986421 1011 23445555555 456999999999999886644 4569
Q ss_pred ccHHHHHHHHHHc
Q 008389 547 IQKHVLRAKAKEM 559 (567)
Q Consensus 547 i~r~~l~~~~~~~ 559 (567)
+.|+.+++.|++.
T Consensus 658 LKRk~I~~~~k~e 670 (678)
T KOG1180|consen 658 LKRKEILAAYKKE 670 (678)
T ss_pred hhHHHHHHHHHHH
Confidence 9999999998864
|
|
| >PRK09192 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-60 Score=499.66 Aligned_cols=500 Identities=21% Similarity=0.265 Sum_probs=382.7
Q ss_pred cCHHHHHhhhhhcCCCceeEEECC---ccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCe
Q 008389 20 LTPLWFLDRAATVHPTRTSVVHGS---TRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAV 96 (567)
Q Consensus 20 ~t~~~~l~~~a~~~p~~~a~~~~~---~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~ 96 (567)
.|+.++|+..+..+|+..++...+ +.+||+||+.++.++|..|.++|+++||+|+++++|++++++++|||+++|++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~G~~ 100 (579)
T PRK09192 21 PTLVEALDYAALGEAGMNFYDRRGQLEEALPYQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAFFACQYAGLV 100 (579)
T ss_pred hhHHHHHHHhhccCCceEEEecCCCEEEEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCchhHHHHHHHHHHcCCe
Confidence 589999999999988777654332 67999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccCC-------hHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccC
Q 008389 97 LNAVNIRLN-------APTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALG 169 (567)
Q Consensus 97 ~v~i~~~~~-------~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 169 (567)
++|+++..+ .+++.++++.+++++++++.+..+.+.+.... ....+..
T Consensus 101 ~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~~~~~~~~~~----------~~~~~~~--------------- 155 (579)
T PRK09192 101 PVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNEATHG----------NPLLHVL--------------- 155 (579)
T ss_pred eEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHHHHHHHhhcc----------cccccee---------------
Confidence 999976443 58899999999999999998766555443211 1111111
Q ss_pred CChHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHH-HhccCCCcEEEEecCccch
Q 008389 170 RGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVAL-IWGMNEGAVYLWTLPMFHC 248 (567)
Q Consensus 170 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~-~~~~~~~d~~~~~~p~~~~ 248 (567)
.+.++....... .......++++++++|||||||.||+|.++|+++...+..... .+++.++|+++..+|++|.
T Consensus 156 ----~~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~ 230 (579)
T PRK09192 156 ----SHAWFKALPEAD-VALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRCVSWLPFYHD 230 (579)
T ss_pred ----ehhhhcccCCCc-cccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcccCCCCCeEEEeCCCCCc
Confidence 111111111111 1112245688999999999999999999999999988887777 7889999999999999999
Q ss_pred hhhHHHHHH-hhhcCeeEEecc----CCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCC---CCcCCCCchhhhhccCC
Q 008389 249 NGWCYTWSL-AALCGTSICLRQ----VTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSE---DTILPLPHVVHVNTAGA 320 (567)
Q Consensus 249 ~g~~~~~~~-~~~g~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~---~~~~~l~~lr~i~~~G~ 320 (567)
+|+...+.. +..|++.++... .++..+++.+.++++++++..|..+..+...... .... ++++|.+++||+
T Consensus 231 ~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~-l~~lr~~~~gG~ 309 (579)
T PRK09192 231 MGLVGFLLTPVATQLSVDYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVNSKDLAELD-LSCWRVAGIGAD 309 (579)
T ss_pred chhHHHHHHHHHhCCeeEeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhccccccccc-hhhhheeEecCc
Confidence 998865655 445555555532 3688999999999999877755555544432211 1223 789999999999
Q ss_pred CCCHHHHHHHHhc----C---CeeeeccCCccCcCCcccccCCCCCC---------------CCC--hhhhhhhhccCCc
Q 008389 321 APPPSVLHAMSQK----G---FHVTHTYGLSETYGPSTVCAWKPEWD---------------SLP--PETQARMKARQGV 376 (567)
Q Consensus 321 ~l~~~~~~~~~~~----~---~~i~~~YG~tE~~~~~~~~~~~~~~~---------------~~~--~~~~~~~~~~~G~ 376 (567)
++++.+.+.+.+. + ..+++.||+||+++.++......... ..+ .........++|.
T Consensus 310 ~l~~~~~~~~~~~~~~~g~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~ 389 (579)
T PRK09192 310 MIRPDVLHQFAEAFAPAGFDDKAFMPSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGK 389 (579)
T ss_pred cCCHHHHHHHHHHHHhcCCChhhcccccccccceeEEeccCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecCC
Confidence 9999999888754 2 24899999999976555432211100 000 0000011257899
Q ss_pred eeccccceeEeeCCCCCccCCCCCceEEEEEecccccccccCCCccchhcc-cCCccccCceEEEeCCCcEEEeccccce
Q 008389 377 RFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDI 455 (567)
Q Consensus 377 ~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~l~~~GR~~d~ 455 (567)
++|++ .++|+|++ ++.++.+ +.|||+++|+.++.||+++ ..+...| .+|||+|||+|++ ++|+++++||.+|+
T Consensus 390 ~~p~~-~v~i~d~~-~~~~~~g--~~Gel~i~g~~~~~gY~~~-~~~~~~~~~dgw~~TGDlg~~-~~G~l~~~GR~dd~ 463 (579)
T PRK09192 390 ALPGH-EIEIRNEA-GMPLPER--VVGHICVRGPSLMSGYFRD-EESQDVLAADGWLDTGDLGYL-LDGYLYITGRAKDL 463 (579)
T ss_pred cCCCc-EEEEECCC-CCCCCCC--CEEEEEecCCchhhhhcCC-ccccccccCCceeeccceeeE-ECCEEEEEeccccE
Confidence 99999 89999976 7888877 8999999999999999999 4444444 6899999999999 89999999999999
Q ss_pred eeeCceecchHHHHHHHhcCCCce--eeEEEEeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCC-CCCCCc
Q 008389 456 IISGGENISSVEVENMMYLHPAVL--EASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMP-AYWVPK 532 (567)
Q Consensus 456 i~~~G~~v~~~~iE~~l~~~~~i~--~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~-~~~~p~ 532 (567)
|+++|.+|+|.+||++|.++|+|. +++|++.+++. ++.++++++..++. ..+. .++.+++++.+. .+..|.
T Consensus 464 i~~~G~~v~p~eIE~~l~~~p~V~~~~~~v~~~~~~~-~~~~~~~v~~~~~~-~~~~----~~l~~~~~~~l~~~~~~~~ 537 (579)
T PRK09192 464 IIINGRNIWPQDIEWIAEQEPELRSGDAAAFSIAQEN-GEKIVLLVQCRISD-EERR----GQLIHALAALVRSEFGVEA 537 (579)
T ss_pred EEECCCccCHHHHHHHHHhcCCccCCcEEEEEeccCC-CeeEEEEEEecCCC-hHHH----HHHHHHHHHHHHHHhCCCc
Confidence 999999999999999999999998 89999998875 55788887765543 3344 456666666653 466777
Q ss_pred eeecC---cccCCCCccccHHHHHHHHHHcCCc
Q 008389 533 SIVFG---PLPKTATGKIQKHVLRAKAKEMGPV 562 (567)
Q Consensus 533 ~i~~~---~lP~t~~GKi~r~~l~~~~~~~~~~ 562 (567)
.+.++ +||+|++||++|++|++++.++...
T Consensus 538 ~i~~~~~~~lP~t~~GKv~R~~l~~~~~~~~~~ 570 (579)
T PRK09192 538 AVELVPPHSLPRTSSGKLSRAKAKKRYLSGAFA 570 (579)
T ss_pred eEEEeCCCCcCCCCCcchhHHHHHHHHHcCCCC
Confidence 66654 3999999999999999998887553
|
|
| >TIGR01923 menE O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-60 Score=485.44 Aligned_cols=435 Identities=25% Similarity=0.400 Sum_probs=365.7
Q ss_pred cHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCeeeeccccCChHHHHHHHhccCceEEEEccc
Q 008389 47 TWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQE 126 (567)
Q Consensus 47 Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~ 126 (567)
||+||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|++++|+++.++.+.+..++++++++.+++++.
T Consensus 1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (436)
T TIGR01923 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL 80 (436)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred chHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCC
Q 008389 127 YFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGT 206 (567)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGt 206 (567)
...... ... .+..+................+++++++|||||
T Consensus 81 ~~~~~~-----------------~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGt 122 (436)
T TIGR01923 81 LEEKDF-----------------QAD---------------------SLDRIEAAGRYETSLSASFNMDQIATLMFTSGT 122 (436)
T ss_pred ccccce-----------------eec---------------------chHhhhhcccccccccccCCcCceEEEEeCCCC
Confidence 421000 000 001111111111111223456789999999999
Q ss_pred CCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhhHHHHHHhhhcCeeEEeccCCHHHHHHHHHhhCceE
Q 008389 207 TASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTH 286 (567)
Q Consensus 207 TG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~ 286 (567)
||.||+|.++|+++...+......++++++|++++.+|++|.+++...+..+..|+++++...+ ..+++.++++++|+
T Consensus 123 TG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~--~~~~~~l~~~~~t~ 200 (436)
T TIGR01923 123 TGKPKAVPHTFRNHYASAVGSKENLGFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKF--NQLLEMIANERVTH 200 (436)
T ss_pred CCCCcEEEEehHHHHHHHHHHHhhcCCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecchH--HHHHHHHHHhCCeE
Confidence 9999999999999999988888889999999999999999999998777778888888777554 38999999999999
Q ss_pred eeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHHHhcCCeeeeccCCccCcCCcccccCCCCCCCCChhh
Q 008389 287 FCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPET 366 (567)
Q Consensus 287 l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~ 366 (567)
+.++|+++..+++.... .+++|.++++|+++++++.+++...++++++.||+||+++.+........
T Consensus 201 ~~~~P~~l~~l~~~~~~-----~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~-------- 267 (436)
T TIGR01923 201 ISLVPTQLNRLLDEGGH-----NENLRKILLGGSAIPAPLIEEAQQYGLPIYLSYGMTETCSQVTTATPEML-------- 267 (436)
T ss_pred EEeHHHHHHHHHhCcCC-----CCceEEEEECCCCCCHHHHHHHHHhCCceeeEecCCccchhccCcCcccc--------
Confidence 99999999999886542 26789999999999999999988889999999999999776554321110
Q ss_pred hhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEecccccccccCCCccchhcccCCccccCceEEEeCCCcE
Q 008389 367 QARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYI 446 (567)
Q Consensus 367 ~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l 446 (567)
.....+|.|++++ ++.+.+.+.+ +.|||+++|+.++.||+++++.+...+.+|||+|||+|++++||.+
T Consensus 268 --~~~~~~G~~~~~~-~~~i~~~~~~--------~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~ 336 (436)
T TIGR01923 268 --HARPDVGRPLAGR-EIKIKVDNKE--------GHGEIMVKGANLMKGYLYQGELTPAFEQQGWFNTGDIGELDGEGFL 336 (436)
T ss_pred --ccccCCCccCCCc-EEEEEeCCCC--------CceEEEEECCccchhhCCChhhhhhhhcCCCeeccceEEEcCCCCE
Confidence 1112489999999 7888433211 5699999999999999998888777778899999999999999999
Q ss_pred EEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCC
Q 008389 447 EIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMP 526 (567)
Q Consensus 447 ~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~ 526 (567)
++.||.+|+|+++|.++++.+||+++.+++.|.+++|++.++...+..+.+++++.++. +. +++.+++++.++
T Consensus 337 ~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~---~~----~~l~~~l~~~l~ 409 (436)
T TIGR01923 337 YVLGRRDDLIISGGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPVAYIVSESDI---SQ----AKLIAYLTEKLA 409 (436)
T ss_pred EEeccccCeEEeCCEeeCHHHHHHHHHhCCCeeEEEEeCCcchhcCCeeEEEEEECCCC---CH----HHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999998877778888998877643 23 678889999999
Q ss_pred CCCCCceeecCc-ccCCCCccccHHHH
Q 008389 527 AYWVPKSIVFGP-LPKTATGKIQKHVL 552 (567)
Q Consensus 527 ~~~~p~~i~~~~-lP~t~~GKi~r~~l 552 (567)
.+++|..+.+++ ||+|++||++|++|
T Consensus 410 ~~~~p~~i~~~~~iP~t~~GK~~r~~L 436 (436)
T TIGR01923 410 KYKVPIAFEKLDELPYNASGKILRNQL 436 (436)
T ss_pred CCCCCeEEEEecCCCCCCCCceecccC
Confidence 999999999888 99999999999865
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate. |
| >PRK07768 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-58 Score=485.36 Aligned_cols=494 Identities=21% Similarity=0.242 Sum_probs=375.9
Q ss_pred CHHHHHhhhhhcCCCceeEEECC--ccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCeee
Q 008389 21 TPLWFLDRAATVHPTRTSVVHGS--TRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLN 98 (567)
Q Consensus 21 t~~~~l~~~a~~~p~~~a~~~~~--~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v 98 (567)
++.+.|...+..+|+.+++...+ +.+||.||++++.++|..|.+.|+++||+|+++++|+++++++++||+++|++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~~~~~~~~~~~~la~~~~g~v~~ 82 (545)
T PRK07768 3 RFTEKMYANARTSPRGMVTGEPDAPVRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQGLWMRGASLT 82 (545)
T ss_pred hHHHHHHHHhhCCCcceEEecCCCceEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHcCcccc
Confidence 57888889999999999997654 6899999999999999999999999999999999999999999999999999999
Q ss_pred eccccCChHHH-------HHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCC
Q 008389 99 AVNIRLNAPTI-------AFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRG 171 (567)
Q Consensus 99 ~i~~~~~~~~l-------~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 171 (567)
++++..+.+++ .++++.++++.+++++......... .. ....+
T Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----~~------~~~~~-------------------- 132 (545)
T PRK07768 83 MLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPVL----EE------KGIRV-------------------- 132 (545)
T ss_pred ccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhhhhh----cc------cCCce--------------------
Confidence 99988776544 4567888999999987654332211 00 00011
Q ss_pred hHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCC-cEEEEecCccchhh
Q 008389 172 AVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEG-AVYLWTLPMFHCNG 250 (567)
Q Consensus 172 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~-d~~~~~~p~~~~~g 250 (567)
..+++++..... .......+++++++|||||||.||+|.++|+++...+......+++..+ |++++.+|++|..|
T Consensus 133 -~~~~~l~~~~~~---~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g 208 (545)
T PRK07768 133 -LTVADLLAADPI---DPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFHDMG 208 (545)
T ss_pred -eehhhhcccCCC---CcCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhcCCCCCCceeEEeCCCccchH
Confidence 223333322111 1123456899999999999999999999999999888877777888876 89999999999999
Q ss_pred hHHHHH-HhhhcCeeEEecc----CCHHHHHHHHHhhCceEeeeCcHHHHHHHcCC----CCCCcCCCCchhhhhccCCC
Q 008389 251 WCYTWS-LAALCGTSICLRQ----VTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAP----SEDTILPLPHVVHVNTAGAA 321 (567)
Q Consensus 251 ~~~~~~-~~~~g~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~----~~~~~~~l~~lr~i~~~G~~ 321 (567)
+...+. ....|++.+...+ .++..+.+.+++++++++.+.|..+..+.... .....+ ++++|.++++|++
T Consensus 209 ~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~lr~~~~~g~~ 287 (545)
T PRK07768 209 MVGFLTVPMYFGAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAKPGAFD-LSSLRFALNGAEP 287 (545)
T ss_pred HHHHHHHHHHCCceEEEeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhccccccCCC-chheeeEEeccCC
Confidence 876554 4566666666643 36788999999999999887777766655432 111233 7899999999999
Q ss_pred CCHHHHHHHHh----cCC---eeeeccCCccCcCCcccccCCCCCC-------C-------CC-hhhhhhhhccCCceec
Q 008389 322 PPPSVLHAMSQ----KGF---HVTHTYGLSETYGPSTVCAWKPEWD-------S-------LP-PETQARMKARQGVRFI 379 (567)
Q Consensus 322 l~~~~~~~~~~----~~~---~i~~~YG~tE~~~~~~~~~~~~~~~-------~-------~~-~~~~~~~~~~~G~~~~ 379 (567)
++++..+++.+ ++. .+++.||+||++..++......... . .+ ..........+|.|++
T Consensus 288 ~~~~~~~~~~~~~~~~g~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 367 (545)
T PRK07768 288 IDPADVEDLLDAGARFGLRPEAILPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLP 367 (545)
T ss_pred CCHHHHHHHHHHHHhcCCCcccccccccccccceEEEccCCCCCcceeeechhHhhccCceeccCCCCcceEEeccCCCC
Confidence 99999998875 344 4999999999976554332211000 0 00 0001223468999999
Q ss_pred cccceeEeeCCCCCccCCCCCceEEEEEecccccccccCCCccchhcccCCccccCceEEEeCCCcEEEeccccceeeeC
Q 008389 380 GLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISG 459 (567)
Q Consensus 380 ~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~ 459 (567)
++ .++|+|++ +++++.+ +.|||+++|+.++.||++.+......+.+|||+|||+|+++++|.++++||.+|+|+.+
T Consensus 368 g~-~~~i~~~~-~~~~~~g--~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~ 443 (545)
T PRK07768 368 GL-EVRVVDED-GQVLPPR--GVGVIELRGESVTPGYLTMDGFIPAQDADGWLDTGDLGYLTEEGEVVVCGRVKDVIIMA 443 (545)
T ss_pred CC-EEEEECCC-CCCCCCC--CEEEEEEccCcccccccCCCCCcccccCCCeeeccceEEEecCCEEEEEccccceEEEC
Confidence 99 89999965 8888887 78999999999999999876655555578899999999999999999999999999999
Q ss_pred ceecchHHHHHHHhcCCCceeeEEEEee--cCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCC--CCCceee
Q 008389 460 GENISSVEVENMMYLHPAVLEASVVARA--DERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAY--WVPKSIV 535 (567)
Q Consensus 460 G~~v~~~~iE~~l~~~~~i~~~~v~~~~--~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~--~~p~~i~ 535 (567)
|.++++.+||..+.++|+|.+++|++.. +...++..+++++..+..+.... .++.+.+++.+.++ ..|..+.
T Consensus 444 G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~l~~~~~~~l~~~~~~~p~~v~ 519 (545)
T PRK07768 444 GRNIYPTDIERAAARVEGVRPGNAVAVRLDAGHSREGFAVAVESNAFEDPAEV----RRIRHQVAHEVVAEVGVRPRNVV 519 (545)
T ss_pred CEecCHHHHHHHHHhCcccccceEEEEEecCCCCceEEEEEEEecccccHHHH----HHHHHHHHHHHHHHhCCCccEEE
Confidence 9999999999999999999998877654 33334555555554433322222 34555555554433 4677676
Q ss_pred cC---cccCCCCccccHHHHHHHHH
Q 008389 536 FG---PLPKTATGKIQKHVLRAKAK 557 (567)
Q Consensus 536 ~~---~lP~t~~GKi~r~~l~~~~~ 557 (567)
++ +||+|++||++|+.|++.|.
T Consensus 520 ~v~~~~lP~t~~GKi~r~~l~~~~~ 544 (545)
T PRK07768 520 VLGPGSIPKTPSGKLRRANAAELVT 544 (545)
T ss_pred EeCCCcCCCCCchhHHHHHHHHhcC
Confidence 55 39999999999999998764
|
|
| >PRK08308 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-58 Score=464.23 Aligned_cols=406 Identities=18% Similarity=0.181 Sum_probs=348.4
Q ss_pred eEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCeeeeccccCChHHHHHHHhccC
Q 008389 38 SVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSA 117 (567)
Q Consensus 38 a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~ 117 (567)
++++.++++||.||.++++++|+.|. .|+++|++|+++++|+++++++++||+++|++++|+++..+.+++..+++.++
T Consensus 1 ~~~~~~~~~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~ 79 (414)
T PRK08308 1 MLIVNDEEYSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRAG 79 (414)
T ss_pred CeEecCceecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhCC
Confidence 46788899999999999999999985 68999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHHHHHHhcCCCCCCCCCCCCcCce
Q 008389 118 SAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQS 197 (567)
Q Consensus 118 ~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 197 (567)
++.++++..... . .. .....++++
T Consensus 80 ~~~~i~~~~~~~---------------------~---~~--------------------------------~~~~~~~~~ 103 (414)
T PRK08308 80 CHGLLYGESDFT---------------------K---LE--------------------------------AVNYLAEEP 103 (414)
T ss_pred CCEEEecCcccc---------------------c---cc--------------------------------CCCCCCCCc
Confidence 999998653100 0 00 001345689
Q ss_pred EEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhhHH-HHHHhhhcCeeEEeccCCHHHHH
Q 008389 198 IALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCY-TWSLAALCGTSICLRQVTAKAVY 276 (567)
Q Consensus 198 ~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~-~~~~~~~g~~~~~~~~~~~~~~~ 276 (567)
++++|||||||.||+|.++|+++.++.......+.+..+|+++..+|++|.+|+.. .+..+..|+++++...+++..++
T Consensus 104 ~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~ 183 (414)
T PRK08308 104 SLLQYSSGTTGEPKLIRRSWTEIDREIEAYNEALNCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKFAL 183 (414)
T ss_pred eEEEECCCCCCCCcEEEEehHhHHHHHHHHHHhhCCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHHHH
Confidence 99999999999999999999999998888888888899999999999999999854 45556678888888888999999
Q ss_pred HHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHHHhcCCeeeeccCCccCcCCcccccCC
Q 008389 277 SAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWK 356 (567)
Q Consensus 277 ~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~ 356 (567)
+.++++++|++.++|+.+..+.+.... ..+++.++++|+++++++.+.+++.+.++++.||+||++.+.....
T Consensus 184 ~~l~~~~~t~~~~~P~~~~~l~~~~~~-----~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~-- 256 (414)
T PRK08308 184 NILRNTPQHILYAVPLMLHILGRLLPG-----TFQFHAVMTSGTPLPEAWFYKLRERTTYMMQQYGCSEAGCVSICPD-- 256 (414)
T ss_pred HHHHHhCCeEEEcCHHHHHHHHhcCCc-----cccccEEEEccCCCCHHHHHHHHHhCChhhhccCccccCCeeecCC--
Confidence 999999999999999999999876432 2357788999999999999999987889999999999975332110
Q ss_pred CCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEecccccccccCCCccchhcccCCccccCc
Q 008389 357 PEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGD 436 (567)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD 436 (567)
......+|.|+|++ ++++.+.. + +.||+++++. ++||+|||
T Consensus 257 -----------~~~~~~~G~p~~~~-~~~~~~~~-------~--~~gel~v~~~------------------~~~~~TGD 297 (414)
T PRK08308 257 -----------MKSHLDLGNPLPHV-SVSAGSDE-------N--APEEIVVKMG------------------DKEIFTKD 297 (414)
T ss_pred -----------CCCCCccCccCCCe-EEEEecCC-------C--CCceEEEEcC------------------CceEECCc
Confidence 01235789999999 78886532 2 5699999752 57999999
Q ss_pred eEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeecCCCCCcceEEEEEcCCccchhhHHHHHH
Q 008389 437 LGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAED 516 (567)
Q Consensus 437 l~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~ 516 (567)
+|++++||.+++.||.+|+||++|++|+|.+||+.+.++++|.+++|++.+++..++.++++++...+. +. ++
T Consensus 298 l~~~~~dg~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~v~~~~~~---~~----~~ 370 (414)
T PRK08308 298 LGYKSERGTLHFMGRMDDVINVSGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVAGERVKAKVISHEEI---DP----VQ 370 (414)
T ss_pred eEEECCCccEEEecccCCeEEECCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCCCC---CH----HH
Confidence 999999999999999999999999999999999999999999999999999988888999988865432 33 67
Q ss_pred HHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHH
Q 008389 517 IMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLR 553 (567)
Q Consensus 517 l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~ 553 (567)
++++++++++.+++|..+.+++ +|+|++||++|+.|+
T Consensus 371 l~~~l~~~l~~~~~P~~i~~v~~iP~t~~GKi~r~~~~ 408 (414)
T PRK08308 371 LREWCIQHLAPYQVPHEIESVTEIPKNANGKVSRKLLE 408 (414)
T ss_pred HHHHHHHhCccccCCcEEEEeccCCCCCCcCeehhhhh
Confidence 8899999999999999999888 999999999999654
|
|
| >PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-57 Score=458.70 Aligned_cols=400 Identities=27% Similarity=0.424 Sum_probs=317.3
Q ss_pred HhhhhhcCCCceeEEE-CCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCeeeeccccC
Q 008389 26 LDRAATVHPTRTSVVH-GSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRL 104 (567)
Q Consensus 26 l~~~a~~~p~~~a~~~-~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~ 104 (567)
|+++|+++||++|+++ ..+++||+||+++++++|..|.+.|+++||+|+++++|++++++++|||+++|++++|++|.+
T Consensus 1 f~~~a~~~pd~~a~~~~~~~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~~v~l~~~~ 80 (417)
T PF00501_consen 1 FERQAQRYPDRIALIDDEGRSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAIPVPLDPSL 80 (417)
T ss_dssp HHHHHHHSTTSEEEEETTTEEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS
T ss_pred ChhHHhhCCCceEEEECCCEEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccceeeeeeccccccccccccccccc
Confidence 6889999999999999 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhccCceEEEEc--ccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHHHHHHhcC
Q 008389 105 NAPTIAFLLGHSASAVIMVD--QEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTG 182 (567)
Q Consensus 105 ~~~~l~~~l~~~~~~~vi~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 182 (567)
+.+++.++++.++++++|+. .+... +........ .......++.++....... ...........
T Consensus 81 ~~~~~~~~l~~~~~~~ii~~~~~d~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~ 146 (417)
T PF00501_consen 81 SEDELRHILRQSGPKVIITSEAVDSEP-LKKLKSIFK----QEDPSSSIIILDRDDLPKK---------EALKSASLSDE 146 (417)
T ss_dssp SHHHHHHHHHHHTESEEEECHHHSCHH-HHHHHHHHT----TSTTTEEEEEESHSSCTTC---------HHHHHHHHCHC
T ss_pred ccccccccccccceeEEEEeccccccc-cccchhhhc----ccccccccccccccccccc---------ccccccccccc
Confidence 99999999999999999981 01111 222211111 0012344555554322111 00011100000
Q ss_pred CCCCCCCCC-CCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHH--HHhccCCCcEEEEecCccchhhh-HHHHHHh
Q 008389 183 DPQFDWKPP-QDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVA--LIWGMNEGAVYLWTLPMFHCNGW-CYTWSLA 258 (567)
Q Consensus 183 ~~~~~~~~~-~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~--~~~~~~~~d~~~~~~p~~~~~g~-~~~~~~~ 258 (567)
.. .+ ..++++++++|||||||.||+|.++|+++.+.+.... ..++++ |++++.+|++|.+|+ ...+.++
T Consensus 147 ~~-----~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~--d~~l~~~p~~~~~g~~~~~~~~l 219 (417)
T PF00501_consen 147 PQ-----SPEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALALPEYFGLG--DRILSFLPLSHIFGLISALLAAL 219 (417)
T ss_dssp SH-----STTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHHHHHTTTTT--TEEEESS-TTSHHHHHHHHHHHH
T ss_pred cc-----cCCCCccceeEeeccccccccccccccccccccccccccccccccccC--ceEEeeccccccccccccccccc
Confidence 00 00 0457999999999999999999999999998877754 223333 699999999999999 6777777
Q ss_pred hhcCeeEEeccCC---HHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCC----CcCCCCchhhhhccCCCCCHHHHHHHH
Q 008389 259 ALCGTSICLRQVT---AKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSED----TILPLPHVVHVNTAGAAPPPSVLHAMS 331 (567)
Q Consensus 259 ~~g~~~~~~~~~~---~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~----~~~~l~~lr~i~~~G~~l~~~~~~~~~ 331 (567)
..|+++++.+... +..+++.++++++|++.++|++++.+++..... ... ++++|.++++|+++++++.++++
T Consensus 220 ~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~~~~~-l~~lr~v~~~G~~l~~~~~~~~~ 298 (417)
T PF00501_consen 220 FSGATLVLPSPFDLFDPESLLELISRYKPTILFAVPSMLEALLQSPEEKTKISKKD-LSSLRTVISGGEPLPPDLLRRLR 298 (417)
T ss_dssp HCTSEEEEESSHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTTHHGTTTT-GTT-SEEEEESST-CHHHHHHHH
T ss_pred cccccccccccccccccccchhcccccccccccccccccccccccccccccccccc-cccccccccccccCChhhccccc
Confidence 7888888876543 477899999999999999999999999832221 123 88899999999999999999999
Q ss_pred hc-CC-eeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEec
Q 008389 332 QK-GF-HVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSG 409 (567)
Q Consensus 332 ~~-~~-~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~ 409 (567)
+. +. ++++.||+||++++++... ........+++|.|+|++ +++|+|++++++++.+ +.|||+++|
T Consensus 299 ~~~~~~~i~~~YG~tE~~~~~~~~~---------~~~~~~~~~~~G~~~~~~-~~~ivd~~~~~~~~~g--~~Gei~i~~ 366 (417)
T PF00501_consen 299 KAFGNAPIINLYGSTETGSIATIRP---------PEDDIEKPGSVGKPLPGV-EVKIVDPNTGEPLPPG--EPGEIVIRG 366 (417)
T ss_dssp HHHTTSEEEEEEEEGGGSSEEEEEE---------TTTHHSSTTSEBEESTTE-EEEEECTTTSSBESTT--SEEEEEEES
T ss_pred cccccccceecccccccceeeeccc---------cccccccccccccccccc-cccccccccccccccc--ccccccccC
Confidence 65 55 8999999999988876542 112223447789999999 8999999999999988 889999999
Q ss_pred ccccccccCCCccchhcccC-CccccCceEEEeCCCcEEEeccccceeeeC
Q 008389 410 NVVMKGYLKNPKANEETFAN-GWYHTGDLGVKHPDNYIEIKDRSKDIIISG 459 (567)
Q Consensus 410 ~~~~~gy~~~~~~~~~~~~~-g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~ 459 (567)
++++.||+++++.+...|.+ |||+|||+|++++||+++++||.||+||++
T Consensus 367 ~~~~~gy~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~~~~~GR~~~~i~~~ 417 (417)
T PF00501_consen 367 PNVFSGYYNDPELTAEAFIDDGWYRTGDLGRLDEDGYLYILGRSDDMIKVR 417 (417)
T ss_dssp TTSBSEETTBHHHHHHHEETTSEEEEEEEEEEETTSEEEEEEEGSCEEEET
T ss_pred CccceeeeccccccccccccccceecceEEEECCCCeEEEEEeeCCEEEeC
Confidence 99999999999999999976 899999999999999999999999999864
|
This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A .... |
| >KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-54 Score=408.25 Aligned_cols=499 Identities=21% Similarity=0.282 Sum_probs=393.8
Q ss_pred cccCHHHHHhhhhhcCCCceeEEECC--ccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCC
Q 008389 18 MALTPLWFLDRAATVHPTRTSVVHGS--TRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGA 95 (567)
Q Consensus 18 ~~~t~~~~l~~~a~~~p~~~a~~~~~--~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~ 95 (567)
++.|+.++|.++++++|+++|+++.+ +++||+|+++.+.++|+.|...|++.||.||++|+|.++++.++|+++++|+
T Consensus 75 ~~~ti~~~F~~~vrr~p~k~aii~~~~~~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VAL~men~pefv~lWlGLaKlGv 154 (649)
T KOG1179|consen 75 ERRTIAELFLSQVRRQPDKPAIIYEGPFQSLTFAELDARSNRVANYLHAEGLKAGDVVALLMENRPEFVALWLGLAKLGV 154 (649)
T ss_pred cCCcHHHHHHHHHHhCCCccEEEEeCCCceeeHHHHHHHHHHHHHHHHHhhcccCCEEEEecCCChhHHHHHHhHHhhCc
Confidence 46899999999999999999999987 7999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHH
Q 008389 96 VLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEY 175 (567)
Q Consensus 96 ~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 175 (567)
+...||++...+.+.|-++.++++++|++++..+.+.+....+.. ........+... ...+..++
T Consensus 155 ~tA~iNtNlR~~~LlHsi~~s~aralv~~~el~~~~~e~~~~l~~------~~i~~~~~~~~~---------~~~g~~~L 219 (649)
T KOG1179|consen 155 ITAFINTNLRGEPLLHSITVSGARALVVGPELLNALEEILPLLIK------NGIHVFSLGPTS---------VPDGIESL 219 (649)
T ss_pred eeeeeccccccchhhhhhhhcCceEEEECHHHHHHHHhcchhhhh------ccceEEecCCCC---------CCchHHHH
Confidence 999999999999999999999999999999988877776433321 112222222221 12234455
Q ss_pred HHHHhcCCCCCCC---CCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhhH
Q 008389 176 EKFLQTGDPQFDW---KPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWC 252 (567)
Q Consensus 176 ~~~l~~~~~~~~~---~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~ 252 (567)
.+.+......+.+ ....+-.++++.+|||||||.||+.++||......+......++++++|+++..+|++|+.|..
T Consensus 220 ~~~l~~~~~~~vp~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~g~~~~DvvY~~lPLYHsaa~i 299 (649)
T KOG1179|consen 220 LAKLSAAPKHPVPVSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVFGMTADDVVYTTLPLYHSAAGI 299 (649)
T ss_pred HHhhcccccCCCCcccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCccceEEEcchhHHHHHHH
Confidence 5555554444322 2334568899999999999999999999999888888788889999999999999999999887
Q ss_pred HHHHH-hhhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHHH
Q 008389 253 YTWSL-AALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMS 331 (567)
Q Consensus 253 ~~~~~-~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~ 331 (567)
..+.. +..|+++++-.+|+..++|+...+|++|++.-.-.+.+.|++.+...... --.+| +.-|..+.+++++.|.
T Consensus 300 lGi~~~l~~GaT~VlrkKFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~~er-~HkVR--la~GNGLR~diW~~Fv 376 (649)
T KOG1179|consen 300 LGIGGCLLHGATVVLRKKFSASNFWDDCRKYNVTVIQYIGELCRYLLNQPPSPEER-QHKVR--LAYGNGLRPDIWQQFV 376 (649)
T ss_pred HHHHHHHhcCceEEEecccchhhhHHHHHHhCCeeeehHHHHHHHHHcCCCChhhc-CceEE--EEecCCCCchHHHHHH
Confidence 66554 56677777778999999999999999999999999999999987765433 33455 4457778899999998
Q ss_pred -hcCC-eeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCc------eeccccceeEeeCCCCCcc--------
Q 008389 332 -QKGF-HVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGV------RFIGLEKLDVIDTRTQQPV-------- 395 (567)
Q Consensus 332 -~~~~-~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~------~~~~~~~~~i~d~~~~~~~-------- 395 (567)
++|+ +|.+.||+||...-......+ .+.+|. -+..+ ++-=.|+++++++
T Consensus 377 ~RFg~~~IgE~YgaTEgn~~~~N~d~~--------------vGA~G~~~~~~~~l~p~-~LIk~D~~t~E~iRd~~G~Ci 441 (649)
T KOG1179|consen 377 KRFGIIKIGEFYGATEGNSNLVNYDGR--------------VGACGFMSRLLKLLYPF-RLIKVDPETGEPIRDSQGLCI 441 (649)
T ss_pred HHcCCCeEEEEeccccCcceeeeecCc--------------cccccchhhhhhhccce-EEEEecCCCCceeecCCceEE
Confidence 5566 599999999975433322111 111211 11112 3333566666654
Q ss_pred --CCCCCceEEEEEe----cc-cccccccCCCccchh-----cc--cCCccccCceEEEeCCCcEEEeccccceeeeCce
Q 008389 396 --PADGKTIGEIVMS----GN-VVMKGYLKNPKANEE-----TF--ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGE 461 (567)
Q Consensus 396 --~~~~~~~Gei~v~----~~-~~~~gy~~~~~~~~~-----~~--~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~ 461 (567)
++| |.|.++-+ .| .-+.||.+....+.. .| .|-||+|||+-.+|+.|++|+.+|..|.++..|+
T Consensus 442 ~~~~G--EpGlLv~~i~~k~P~~~F~GY~g~~~~t~kKl~rDVFkkGD~~f~tGDlLv~D~~GylYF~DRtGDTFRWKGE 519 (649)
T KOG1179|consen 442 PCPPG--EPGLLVGKIVQKNPLRSFLGYAGPKKATEKKLLRDVFKKGDVYFNTGDLLVADELGYLYFKDRTGDTFRWKGE 519 (649)
T ss_pred ECCCC--CCceEEEEeccCCchhhhccccCchhhhhhhhHHhhhccCcEEEeeCcEEEEecCCcEEEeccCCCceeecCC
Confidence 444 77865432 22 237899986655543 34 3559999999999999999999999999999999
Q ss_pred ecchHHHHHHHhcCCCceeeEEEEeecCCC-CCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-c
Q 008389 462 NISSVEVENMMYLHPAVLEASVVARADERW-GESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-L 539 (567)
Q Consensus 462 ~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~-g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-l 539 (567)
+|+..|||+++..+.+++|+.|.|+.-+.. |-.=.|.|++.+.. +.+. ..+-..+++.||+|.+|.++.+.+ +
T Consensus 520 NVsTtEVe~~l~~~~~~~dv~VYGV~VP~~EGRaGMAaI~~~p~~-~~d~----~~l~~~l~~~LP~YA~P~FlRl~~~i 594 (649)
T KOG1179|consen 520 NVSTTEVEDVLSALDFLQDVNVYGVTVPGYEGRAGMAAIVLDPTT-EKDL----EKLYQHLRENLPSYARPRFLRLQDEI 594 (649)
T ss_pred cccHHHHHHHHhhhccccceeEEEEecCCccCccceEEEEecCcc-cchH----HHHHHHHHhhCccccchHHHHHHhhh
Confidence 999999999999999999999998876554 33334555566665 5555 678889999999999999999988 9
Q ss_pred cCCCCccccHHHHHHHH
Q 008389 540 PKTATGKIQKHVLRAKA 556 (567)
Q Consensus 540 P~t~~GKi~r~~l~~~~ 556 (567)
++|.+=|..+..|.+..
T Consensus 595 ~~TgTFKl~K~~L~~eg 611 (649)
T KOG1179|consen 595 EKTGTFKLQKTELQKEG 611 (649)
T ss_pred hcccchhhHHHHHHHcc
Confidence 99999999999998764
|
|
| >TIGR01733 AA-adenyl-dom amino acid adenylation domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-51 Score=418.29 Aligned_cols=393 Identities=24% Similarity=0.284 Sum_probs=328.2
Q ss_pred cHHHHHHHHHHHHHHHHH-ccCCCCCEEEEEcCChHHHHHHHHhhhhcCCeeeeccccCChHHHHHHHhccCceEEEEcc
Q 008389 47 TWLQTYQRCRRLASALCK-RSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQ 125 (567)
Q Consensus 47 Ty~el~~~~~~lA~~L~~-~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~ 125 (567)
||.||.+.+.++|+.|.+ .|+++||+|+++++|+++++++++||+++|++++|+++..+.+.+.++++.+++++++++.
T Consensus 1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~ 80 (408)
T TIGR01733 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS 80 (408)
T ss_pred CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence 799999999999999998 8999999999999999999999999999999999999999999999999999999999998
Q ss_pred cchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCC
Q 008389 126 EYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSG 205 (567)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSG 205 (567)
.....+... ....+.+... +...................+++++++||||
T Consensus 81 ~~~~~~~~~-------------~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSG 130 (408)
T TIGR01733 81 ALASRLAGL-------------VLPIILVDPL-----------------ELAALDDAPAPPPPDAPSGPDDLAYVIYTSG 130 (408)
T ss_pred chhhhcccc-------------CCceEEechh-----------------hhhhcccccccccccCCCCCCCcEEEEEcCC
Confidence 765544321 1122222111 0000001000000111134688999999999
Q ss_pred CCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhhHHHHHHhhhcCeeEEeccCC---HHHHHHHHHhh
Q 008389 206 TTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAALCGTSICLRQVT---AKAVYSAIAKY 282 (567)
Q Consensus 206 tTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~~~---~~~~~~~i~~~ 282 (567)
|||.||+|.+||+++...+......++++++|++++..|++|.+++...+.++..|+++++..... +..+.+.++++
T Consensus 131 TtG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~ 210 (408)
T TIGR01733 131 STGRPKGVVVTHRSLVNLLAWLARRYGLDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDEERDAALLAALIAEH 210 (408)
T ss_pred CCCCCCEEEeccHHHHHHHHHHHHhcCCCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHc
Confidence 999999999999999999998888889999999999999999999988888888898888876543 68999999999
Q ss_pred CceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHHHhc-C-CeeeeccCCccCcCCcccccCCCCCC
Q 008389 283 GVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQK-G-FHVTHTYGLSETYGPSTVCAWKPEWD 360 (567)
Q Consensus 283 ~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~-~-~~i~~~YG~tE~~~~~~~~~~~~~~~ 360 (567)
++|.+.++|.+++.+.+... .. ++++|.++++|+++++++.+.+.+. + +.+++.||+||+++++..........
T Consensus 211 ~~t~l~~~p~~~~~l~~~~~---~~-~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~ 286 (408)
T TIGR01733 211 PVTVLNLTPSLLALLAAALP---PA-LASLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDADDA 286 (408)
T ss_pred CceEEEeCHHHHHHHHHhhh---hc-ccCceEEEEeCccCCHHHHHHHHHhCCCcEEEecccCCceEEEEEEEEcCcccc
Confidence 99999999999999998754 22 7899999999999999999999855 5 89999999999987765332222111
Q ss_pred CCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEecccccccccCCCccchhcccC-------C--c
Q 008389 361 SLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFAN-------G--W 431 (567)
Q Consensus 361 ~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~-------g--~ 431 (567)
. .. ...++|.|++++ .++|+|++ +++++.| +.|||+++|+.++.||+++++.+...|.. | |
T Consensus 287 ~-----~~-~~~~~G~~~~~~-~~~i~~~~-~~~~~~g--~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~ 356 (408)
T TIGR01733 287 P-----RE-SPVPIGRPLANT-RLYVLDDD-LRPVPVG--VVGELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARL 356 (408)
T ss_pred C-----Cc-cccccCcccCCc-eEEEECCC-CCCCCCC--CceEEEecCccccccccCChhhhhcceeeCCCCCCCCceE
Confidence 0 00 257899999999 89999998 8888888 78999999999999999999888877732 2 9
Q ss_pred cccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEE
Q 008389 432 YHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASV 483 (567)
Q Consensus 432 ~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v 483 (567)
|+|||+|+++++|++++.||.+|+|+.+|++++|.+||+++..++.|.+++|
T Consensus 357 ~~TGDl~~~d~~g~~~~~gR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v 408 (408)
T TIGR01733 357 YRTGDLVRYLPDGNLEFLGRIDDQVKIRGYRIELGEIEAALLRHPGVREAVV 408 (408)
T ss_pred EECCceEEEcCCCCEEEeeccCCEEEeCeEEechHHHHHHHhcCcchhhhcC
Confidence 9999999999999999999999999999999999999999999999998865
|
This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. |
| >PTZ00297 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-47 Score=421.40 Aligned_cols=480 Identities=15% Similarity=0.080 Sum_probs=350.4
Q ss_pred cCHHHHHhhhhhcCCCceeEEEC---C--ccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcC
Q 008389 20 LTPLWFLDRAATVHPTRTSVVHG---S--TRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAG 94 (567)
Q Consensus 20 ~t~~~~l~~~a~~~p~~~a~~~~---~--~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G 94 (567)
.|+.++|++.++++|+++|+... + +++||+|+.++++++|..|.+.|+++||+|+|+++|+++|+++.+||+++|
T Consensus 427 ~Tl~dll~~~a~~~pd~~al~~~~~~g~~~~lTY~El~~~V~~lAa~L~~lGV~~GDrVaIls~N~~Ewvia~lA~~~~G 506 (1452)
T PTZ00297 427 RSLGEMWERSVTRHSTFRCLGQTSESGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEASRNIVILEVACALYG 506 (1452)
T ss_pred CCHHHHHHHHHHHCCCCeEEEEeccCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcC
Confidence 58999999999999999999742 3 679999999999999999999999999999999999999999999999999
Q ss_pred CeeeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcc-cchhccCCChH
Q 008389 95 AVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPK-DLKYALGRGAV 173 (567)
Q Consensus 95 ~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~ 173 (567)
++++|+++ +.+++.++++.++++++|++.+..+.+.+... ...+.++.++....... ......+....
T Consensus 507 aV~VPly~--t~~eL~yIL~~S~akvVfv~~~~l~kl~~i~~---------~~Lr~IIv~d~~~~~~~~~~~~~~~i~~~ 575 (1452)
T PTZ00297 507 FTTLPLVG--KGSTMRTLIDEHKIKVVFADRNSVAAILTCRS---------RKLETVVYTHSFYDEDDHAVARDLNITLI 575 (1452)
T ss_pred CEEEeCCC--CHHHHHHHHHhcCCcEEEEchhHHHHHHhhcc---------cCCcEEEEECCCcccccccccccCCccee
Confidence 99999975 46789999999999999998776665443211 14677887753211000 00001112346
Q ss_pred HHHHHHhcCCCCCC-CCCCCCcCceEEEEe---cCCCCCCCCeeeeccHHHHHHHHHHHHHh---ccCCCcEEEEecCcc
Q 008389 174 EYEKFLQTGDPQFD-WKPPQDEWQSIALGY---TSGTTASPKGVVLSHRGAYLMSLSVALIW---GMNEGAVYLWTLPMF 246 (567)
Q Consensus 174 ~~~~~l~~~~~~~~-~~~~~~~~~~~~i~~---TSGtTG~pK~v~~t~~~l~~~~~~~~~~~---~~~~~d~~~~~~p~~ 246 (567)
+|++++..+..... ...+.+++|++.|+| ||||||.||||++||+|++.++....... ...++|++++.+|++
T Consensus 576 s~~~ll~~G~~~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~~~~~~~~D~~Ls~LPLa 655 (1452)
T PTZ00297 576 PYEFVEQKGRLCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVLPSSFKKHLMVHFTPFA 655 (1452)
T ss_pred eHHHHHhcCcccCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhccccCCCCCCEEEEechHH
Confidence 68888887642111 122346788888885 99999999999999999999988765432 456789999999999
Q ss_pred chhhhHHHHHHhhhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCC----------------------
Q 008389 247 HCNGWCYTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSED---------------------- 304 (567)
Q Consensus 247 ~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~---------------------- 304 (567)
|+++....+.++..|+++.. +++..+++.|++++||++.++|.+|+.+.......
T Consensus 656 HI~er~~~~~~l~~G~~I~~---~d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~~~~~lf~~A~~~k~~~ 732 (1452)
T PTZ00297 656 MLFNRVFVLGLFAHGSAVAT---VDAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFERAFQLRSRL 732 (1452)
T ss_pred HHHHHHHHHHHHHcCCEEEe---CCHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 99997766666667776643 47899999999999999999999999876431110
Q ss_pred ----CcC---------------CCCchhhhhccCCCCCHHHHHHHHhcCCeeeeccCCccCcCCcccccCCCCCCCCChh
Q 008389 305 ----TIL---------------PLPHVVHVNTAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPE 365 (567)
Q Consensus 305 ----~~~---------------~l~~lr~i~~~G~~l~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~ 365 (567)
... -...+|.+++||. ++........++++...||+||+. +.+....
T Consensus 733 ~~~g~~~~~l~d~LVf~kir~~lGGrlr~~isGga---~~~l~~~l~~~i~i~~g~glTE~~---~~~~~~~-------- 798 (1452)
T PTZ00297 733 INIHRRDSSLLRFIFFRATQELLGGCVEKIVLCVS---EESTSFSLLEHISVCYVPCLREVF---FLPSEGV-------- 798 (1452)
T ss_pred HhcCCCCcHHHHHHHHHHHHHHhcCCeEEEEECCC---ccccChHHhCCceEEEecceEEee---eecCCCC--------
Confidence 000 0134566666652 222223334467888899999952 1111110
Q ss_pred hhhhhhccCCceeccccceeEeeC-CCCCccCCCCCceEEEEEecccccccccCCCccchhcccCCccccCceEEEeCCC
Q 008389 366 TQARMKARQGVRFIGLEKLDVIDT-RTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDN 444 (567)
Q Consensus 366 ~~~~~~~~~G~~~~~~~~~~i~d~-~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g 444 (567)
....|.|+|++ +++|.+. +.+.. + ..|||+++ |+++++.|.+. .+||+ +||
T Consensus 799 -----~~~~G~Plpgv-EvKI~~~~E~~~~---~--~~GEIlvr-------~~kdpe~T~e~-~~gW~---------~dG 850 (1452)
T PTZ00297 799 -----FCVDGTPAPSL-QVDLEPFDEPSDG---A--GIGQLVLA-------KKGEPRRTLPI-AAQWK---------RDR 850 (1452)
T ss_pred -----cccCCeecCce-EEEEcccccccCC---C--CCCeEEEE-------ECCChHHHHHh-hCcCc---------cCC
Confidence 01239999999 8999874 22221 1 35999995 35778777763 35664 699
Q ss_pred cEEEeccccceee-eCceecchHHHHHHHhcCCCceeeEEEEeecCCCCCcceEEEEEcCCccc----------------
Q 008389 445 YIEIKDRSKDIII-SGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDK---------------- 507 (567)
Q Consensus 445 ~l~~~GR~~d~i~-~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~---------------- 507 (567)
+|+++||.+|+|| .+|++|.|..||+.+..+|.|.+++|+|...+. ++|+|+++.+.-.
T Consensus 851 ~L~IidRkKdlikls~GEyVaP~~IE~~l~~sp~I~qi~V~Gd~~k~----lvALVvpd~e~l~~~wa~~~gi~~~~~~~ 926 (1452)
T PTZ00297 851 TLRLLGPPLGILLPVAYEYVIAAELERIFSQSRYVNDIFLYADPSRP----IIAIVSPNRDTVEFEWRQSHCMGEGGGPA 926 (1452)
T ss_pred eEEEEeccccceECCCCcEEcHHHHHHHHhcCCCccEEEEEecCCCc----eEEEEEeCHHHHHHHHHHHcCCCcccccc
Confidence 9999999999999 999999999999999999999999999987665 8999988753211
Q ss_pred --hhhHHHHH----HHHHHH---H--hcCCCCCCCceeecCc--c-c----CCCCccccHHHHHHHHHHc
Q 008389 508 --SNEQQLAE----DIMKFC---R--AKMPAYWVPKSIVFGP--L-P----KTATGKIQKHVLRAKAKEM 559 (567)
Q Consensus 508 --~~~~~~~~----~l~~~l---~--~~l~~~~~p~~i~~~~--l-P----~t~~GKi~r~~l~~~~~~~ 559 (567)
.+..++.+ .+.+.+ . +.+..+.+++.+.+.+ + + .|++.|+.|+.+.+.|++.
T Consensus 927 ~~~~~~el~~~~~~~v~~~i~~V~~~n~l~~~ei~k~~~Ll~~~Ft~enGlLTPTlKlKR~~I~~kY~~~ 996 (1452)
T PTZ00297 927 RQLGWTELVAYASSLLTADFACIAKENGLHPSNVPEYVHLHPHAFKDHSTFLTPYGKIRRDAVHSYFSSV 996 (1452)
T ss_pred ccCCHHHHHHhHHHHHHHHHHHHHHHhCcCccceeeEEEEeCCCCCCCCCcCChhhhhhHHHHHHHHHHH
Confidence 01122211 233332 2 1256677887766643 4 2 7999999999999998764
|
|
| >PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-47 Score=378.61 Aligned_cols=319 Identities=25% Similarity=0.359 Sum_probs=272.2
Q ss_pred CcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhhHHHHHHhhhcCeeEEe---cc
Q 008389 193 DEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAALCGTSICL---RQ 269 (567)
Q Consensus 193 ~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~---~~ 269 (567)
.++++++++|||||||.||+|.++|+++..........+ ...++++..+|++|.+|+...+..++.|++.+++ ..
T Consensus 33 ~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~--~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v~~~~~~~ 110 (358)
T PRK07824 33 IDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDRL--GGPGQWLLALPAHHIAGLQVLVRSVIAGSEPVELDVSAG 110 (358)
T ss_pred CCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhcc--CCCCeEEEECChHHHHHHHHHHHHHHcCCeEEecCcCCC
Confidence 457899999999999999999999999988776655443 3557889999999999998888888888888773 34
Q ss_pred CCHHHHHHHHHhhC--ceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHHHhcCCeeeeccCCccCc
Q 008389 270 VTAKAVYSAIAKYG--VTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQKGFHVTHTYGLSETY 347 (567)
Q Consensus 270 ~~~~~~~~~i~~~~--~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~i~~~YG~tE~~ 347 (567)
+++..+++.+++++ .++...+|..+..++...... .. ++++|.+++||+++++++.+++.+.++++++.||+||++
T Consensus 111 ~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~~~-~~-~~~l~~i~~gG~~l~~~~~~~~~~~~~~v~~~YG~TE~~ 188 (358)
T PRK07824 111 FDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPAAT-AA-LAELDAVLVGGGPAPAPVLDAAAAAGINVVRTYGMSETS 188 (358)
T ss_pred cCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCcccc-CC-cccceEEEECCCCCCHHHHHHHHhcCCcEEecccCCccC
Confidence 78999999999998 566677888888777654322 23 789999999999999999999988899999999999986
Q ss_pred CCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEecccccccccCCCccchhcc
Q 008389 348 GPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETF 427 (567)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~ 427 (567)
+.+. ..|.|++++ ++++.+ |||+++|+.++.||++++.... ..
T Consensus 189 ~~~~---------------------~~G~~~~g~-~v~i~~--------------Gei~v~g~~~~~gY~~~~~~~~-~~ 231 (358)
T PRK07824 189 GGCV---------------------YDGVPLDGV-RVRVED--------------GRIALGGPTLAKGYRNPVDPDP-FA 231 (358)
T ss_pred CCcC---------------------cCceeCCCC-EEEecC--------------CEEEEecCccccccCCCccccc-cc
Confidence 5321 247788888 787732 8999999999999998876432 22
Q ss_pred cCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeecCCCCCcceEEEEEcCCccc
Q 008389 428 ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDK 507 (567)
Q Consensus 428 ~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~ 507 (567)
.+|||+|||+|++ ++|.+++.||.||+|+.+|++|+|.+||..+.++|+|.+++|++.+++..|+.++++++...+. .
T Consensus 232 ~~g~~~TGDl~~~-~~g~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~vv~~~~~~~g~~~~a~v~~~~~~-~ 309 (358)
T PRK07824 232 EPGWFRTDDLGAL-DDGVLTVLGRADDAISTGGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRVVAAVVGDGGP-A 309 (358)
T ss_pred CCCceecccEEEE-eCCEEEEEeccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEecCCCCCceEEEEEEEeCCCC-C
Confidence 5789999999999 7999999999999999999999999999999999999999999999988899999999876544 3
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHHHH
Q 008389 508 SNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKE 558 (567)
Q Consensus 508 ~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~ 558 (567)
... +++++++++.++.+++|..|.+++ ||+|++||++|++|++++.+
T Consensus 310 ~~~----~~i~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 357 (358)
T PRK07824 310 PTL----EALRAHVARTLDRTAAPRELHVVDELPRRGIGKVDRRALVRRFAG 357 (358)
T ss_pred cCH----HHHHHHHHhhCccccCCCEEEEecCCCCCCCccccHHHHHHHhhc
Confidence 344 788999999999999999999888 99999999999999999865
|
|
| >COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=340.13 Aligned_cols=409 Identities=22% Similarity=0.270 Sum_probs=337.5
Q ss_pred ccCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCeee
Q 008389 19 ALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLN 98 (567)
Q Consensus 19 ~~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v 98 (567)
..++...|.+.+...|++.|+.+.+.++||+|+..++.++|..|.+.|+.++++|+++.+.+.+++++++|+++.|+.++
T Consensus 226 ~~~i~~~f~~~a~~~p~~~a~~~~~~~lty~el~~~a~~la~~l~~~g~~~~~~V~i~~~rs~~~i~~~l~ilkaG~~yv 305 (642)
T COG1020 226 RLTIHLLFEEQAATTPDAVALVRGGQQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYV 305 (642)
T ss_pred cchHHHHHHHHHHhCCCceeEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCHHHHHHHHHHHhcCCeEe
Confidence 36899999999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred eccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHHHHH
Q 008389 99 AVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKF 178 (567)
Q Consensus 99 ~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (567)
|+++.++.+++..+++.++++.+++.......... ... +.++.... .
T Consensus 306 P~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~~--------------~~~-~~~~~~~~----------------~-- 352 (642)
T COG1020 306 PLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDVG--------------LPG-LALDDALS----------------E-- 352 (642)
T ss_pred cCCCCChHHHHHHHHhhcCccEEEecccccccccc--------------CCc-cccccccc----------------c--
Confidence 99999999999999999999999998333221000 000 11111000 0
Q ss_pred HhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhhHHHHHHh
Q 008389 179 LQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLA 258 (567)
Q Consensus 179 l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~ 258 (567)
....... .....+++.+|++|||||||.||||..+|+++.+...+....+.++..|+++...++.+.......+...
T Consensus 353 --~~~~~~~-~~~~~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~~~~~~d~~l~~~s~~fD~~~~~~f~~l 429 (642)
T COG1020 353 --IPDTDPI-PQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFGLDADDRVLALASLSFDASVFEIFGAL 429 (642)
T ss_pred --CCccCcc-cccCCCCCeEEEEEccCCCCCCCCceecCHHHHHHHHHHHHhcCCCcccEEeecCCcccchhHHHHHHHH
Confidence 0000000 1123457899999999999999999999999999888787889999999999999987777778888889
Q ss_pred hhcCeeEEecc---CCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCC-cCCCCchhhhhccCCCCCHHHHHHHHhc-
Q 008389 259 ALCGTSICLRQ---VTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDT-ILPLPHVVHVNTAGAAPPPSVLHAMSQK- 333 (567)
Q Consensus 259 ~~g~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~-~~~l~~lr~i~~~G~~l~~~~~~~~~~~- 333 (567)
..|++++.... .++..+...+.++++|.+..+|..+..++....... ......+|.+++||+.++......+...
T Consensus 430 ~~G~~l~~~~~~~~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~ 509 (642)
T COG1020 430 LEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPDLISPCERLRQLLSGGEALPLALVQRLLQLA 509 (642)
T ss_pred hCCCEEEecCccccCCHHHHHHHHHHcCCEEEEecHHHHHHHHhchhhccccCCcccccEEEEcCCCCCHHHHHHHHHhc
Confidence 99998888753 578999999999999999999999999987622211 1113358999999999999999988754
Q ss_pred --CCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEeccc
Q 008389 334 --GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNV 411 (567)
Q Consensus 334 --~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~ 411 (567)
...+.+.||.||+...+.......... . ....|.|+++. .+.|+| +.++++|.+ ..||+++.|.+
T Consensus 510 ~~~~~l~~~ygpTe~~~~~~~~~~~~~~~--------~-~~piG~p~~n~-~~~ild-~~~~~~p~g--v~gel~i~g~~ 576 (642)
T COG1020 510 ALARRLLNLYGPTEATLDAPSFPISAELE--------S-RVPIGRPVANT-QLYILD-QGLRPLPLG--VPGELYIAGLG 576 (642)
T ss_pred cccceEeeccCccHHhhheeeEEcccccC--------C-CCCcceeeCCC-eEEEEC-CCCCcCCCC--CCeeeEECCcc
Confidence 468999999999654444332211110 0 46889999998 899999 449999999 78999999999
Q ss_pred ccccccCCCccchhcccCC-ccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCC
Q 008389 412 VMKGYLKNPKANEETFANG-WYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHP 476 (567)
Q Consensus 412 ~~~gy~~~~~~~~~~~~~g-~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~ 476 (567)
+..||+++++.+..+|... +|+|||++++.+||.+.++||.|+++|++|.++.+.+||..+.++|
T Consensus 577 ~a~gy~~~p~lt~~~f~~~~~y~tgD~~r~~~dg~~e~lgr~D~qvki~g~Riel~eie~~l~~~~ 642 (642)
T COG1020 577 LALGYLNRPDLTAERFIALRLYRTGDLARPLADGALEYLGRKDSQVKIRGFRIELGEIEAALAEQP 642 (642)
T ss_pred hhhhhcCChhhhHHHhhhccCccCCCeeeECCCCeEEEeccccceeEeceEecCcHHHHHHHhcCC
Confidence 9999999999999999775 9999999999999999999999999999999999999999998764
|
|
| >TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=314.36 Aligned_cols=287 Identities=21% Similarity=0.233 Sum_probs=226.8
Q ss_pred CceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCC--CcEEEEecCccchhhhHHHHH-HhhhcCeeEEeccCC
Q 008389 195 WQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNE--GAVYLWTLPMFHCNGWCYTWS-LAALCGTSICLRQVT 271 (567)
Q Consensus 195 ~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~--~d~~~~~~p~~~~~g~~~~~~-~~~~g~~~~~~~~~~ 271 (567)
+..++++|||||||.||+|.++|+++.+.+......+++.. .+++++.+|++|++|+.+.+. .+..|++++....++
T Consensus 95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~~~~ 174 (386)
T TIGR02372 95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKILGERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLAAAP 174 (386)
T ss_pred CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHhCcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecCCCC
Confidence 35778999999999999999999999988887777777654 467999999999999865444 455677777777788
Q ss_pred HHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHHHhcCC-eeeeccCCccCcCCc
Q 008389 272 AKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQKGF-HVTHTYGLSETYGPS 350 (567)
Q Consensus 272 ~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~~~-~i~~~YG~tE~~~~~ 350 (567)
+..+++.++.+ |++.++|++++.+.+.. .. +++++. ++||++++++..+.+++.+. ++++.||+||+++++
T Consensus 175 ~~~~l~~i~~~--t~~~~~P~~l~~l~~~~----~~-l~slr~-i~gGa~l~~~l~~~~~~~g~~~v~~~YG~TEt~~i~ 246 (386)
T TIGR02372 175 ASGIMRHARPG--DLIVGTPFIWEQLADLD----YR-LPGVVG-VSSGAPSTAATWRCLLAAGLARLLEVYGATETGGIG 246 (386)
T ss_pred hHHHHHhhccC--CEEEECcHHHHHHHhhC----cC-CCccee-EecCCCCCHHHHHHHHHhcccchhheeccccccccc
Confidence 88888887654 89999999999998753 22 566775 67899999999999987764 699999999998755
Q ss_pred ccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEecccccccccCCCccchhcccCC
Q 008389 351 TVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANG 430 (567)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g 430 (567)
+... ....|.++|++ .+.+ + + +. + .|+ ..
T Consensus 247 ~~~~----------------~~~~~~~~p~~-~~~~-~-~-~~----------~---~g~------------------~~ 275 (386)
T TIGR02372 247 LREA----------------PDDPFRLLPDL-ACFA-D-T-LS----------S---AGL------------------AR 275 (386)
T ss_pred cccC----------------CCCCcccCCCc-cccC-C-C-cc----------C---CCc------------------cc
Confidence 4321 02245566666 3332 1 1 10 0 011 12
Q ss_pred ccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeecCCCCCcceEEEEEcCCccchhh
Q 008389 431 WYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNE 510 (567)
Q Consensus 431 ~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~ 510 (567)
|++|||+|+++++|++++.||.||+|+++|++|+|.+||+.+.++|+|.+++|.. .|+++.++|+++++. ..
T Consensus 276 ~~~tgD~g~~d~~G~l~i~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~~~v~~-----~g~~~~a~vv~~~~~-~~-- 347 (386)
T TIGR02372 276 RLDLQDRLAWDKDGGFTILGRKDEILQVGGVNVSPGHVRDILERNPRVRAAAVRL-----DGRRLKAFIVVAEDA-DE-- 347 (386)
T ss_pred eeecCceEEEcCCCcEEEecccCCEEEECCEEEcHHHHHHHHHcCCCceEEEEEc-----CCceEEEEEEECCCC-Ch--
Confidence 5889999999999999999999999999999999999999999999999998853 256789999987654 22
Q ss_pred HHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCcccc
Q 008389 511 QQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQ 548 (567)
Q Consensus 511 ~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~ 548 (567)
+.+.++++++++++++.|++|..+.+++ +|+|++||++
T Consensus 348 ~~~~~~l~~~~~~~L~~~~~P~~i~~~~~lP~t~~GKi~ 386 (386)
T TIGR02372 348 AELEIELRATAARHLPAPARPDRFRFGTELPRTGAGKLA 386 (386)
T ss_pred HHHHHHHHHHHHHhCCCCCCCcEEEEcccCCCCCCCCcC
Confidence 2234688999999999999999999988 9999999985
|
Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names. |
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=313.82 Aligned_cols=325 Identities=19% Similarity=0.203 Sum_probs=240.7
Q ss_pred CcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHH---HHHhccCCCcEEEEecCccchh-hhHHHHHHhhhcCeeEEec
Q 008389 193 DEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSV---ALIWGMNEGAVYLWTLPMFHCN-GWCYTWSLAALCGTSICLR 268 (567)
Q Consensus 193 ~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~---~~~~~~~~~d~~~~~~p~~~~~-g~~~~~~~~~~g~~~~~~~ 268 (567)
+.++++.+++||||||.||++.++|.++..+.... ...++++++|++++..++.+.. ++...+.....|++++.+.
T Consensus 73 ~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 152 (422)
T TIGR02155 73 PREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPIS 152 (422)
T ss_pred ChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecC
Confidence 45678889999999999999999999987654433 2345889999998877655433 3333444556777777777
Q ss_pred cCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcC-CCCchhhhhccCCCCCHHHHHHHHh-cCCeeeeccCCccC
Q 008389 269 QVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTIL-PLPHVVHVNTAGAAPPPSVLHAMSQ-KGFHVTHTYGLSET 346 (567)
Q Consensus 269 ~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~-~l~~lr~i~~~G~~l~~~~~~~~~~-~~~~i~~~YG~tE~ 346 (567)
..++..+++.|+++++|++.++|+++..|++........ ...++|.++++||++++++++.+++ +++++++.||+||+
T Consensus 153 ~~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~~~~~lr~i~~~ge~l~~~~~~~i~~~~g~~v~~~YG~tE~ 232 (422)
T TIGR02155 153 GGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDPAQTSLQVGIFGAEPWTNAMRKEIEARLGMKATDIYGLSEV 232 (422)
T ss_pred CCCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCcccCceEEEEEeCCcCCHHHHHHHHHHhCCceEecccchhh
Confidence 677899999999999999999999999998754332221 1358999999999999999999985 59999999999998
Q ss_pred cCC--cccccCCCCCCCCChhhhhhhhccCCceec--cccceeEeeCCCCCccCCCCCceEEEEEecccccccccCCCcc
Q 008389 347 YGP--STVCAWKPEWDSLPPETQARMKARQGVRFI--GLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKA 422 (567)
Q Consensus 347 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~--~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~ 422 (567)
++. ...|.. ...|.+++ .+ .++|+|+++++++++| +.|||++++..
T Consensus 233 ~~~~~~~~~~~----------------~~~g~~~~~~~~-~~eivd~~~g~~v~~G--e~Gelvvt~~~----------- 282 (422)
T TIGR02155 233 IGPGVAMECVE----------------TQDGLHIWEDHF-YPEIIDPHTGEVLPDG--EEGELVFTTLT----------- 282 (422)
T ss_pred cCCceeecccc----------------cCCCceEecCee-EEEEECCCCCCCCCCC--CeeEEEEecCC-----------
Confidence 532 222210 01122332 34 6789998789999988 88999998742
Q ss_pred chhcccCCccccCceEEEeCC-C-----cEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeecCCCCCcce
Q 008389 423 NEETFANGWYHTGDLGVKHPD-N-----YIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPC 496 (567)
Q Consensus 423 ~~~~~~~g~~~TGDl~~~~~~-g-----~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~ 496 (567)
...|..+||+|||+++++++ | .+++.||.+|+|+++|.+|+|.+||.++.++|+|.....+........+.+.
T Consensus 283 -~~~~p~~ry~TGDl~~~~~~~Gr~~~~~~~i~GR~~d~i~~~G~~v~p~eie~~l~~~~~v~~~~q~~~~~~~~~~~~~ 361 (422)
T TIGR02155 283 -KEALPVIRYRTRDLTRLLPGTARTMRRMDRITGRSDDMLIIRGVNVFPTQLEEVILKMDELSPHYQLELTRNGHMDELT 361 (422)
T ss_pred -ccccceeeEEcCcEEEEECCCCCcccccccccCccCCeEEECCEEECHHHHHHHHHhCcCcCCCEEEEEEcCCCccEEE
Confidence 23445679999999999875 4 4689999999999999999999999999999999843333444444456788
Q ss_pred EEEEEcCCcc----chhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHH
Q 008389 497 AFVTLKPEVD----KSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKH 550 (567)
Q Consensus 497 ~~v~~~~~~~----~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~ 550 (567)
++|+..++.. ..+.+.+.++|++.+++.+..+.. ..+..++ ||+|+ ||+.|-
T Consensus 362 ~~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-v~~~~~~~lp~~~-GK~~~~ 418 (422)
T TIGR02155 362 LKVELKPESYTLRLHEQASLLAGEIQHTIKQEVGVSMD-VHLVEPGSLPRSE-GKARRV 418 (422)
T ss_pred EEEEEecCcccccchHHHHHHHHHHHHHHHhccCcEEE-EEEECCCCccCCC-CCceEE
Confidence 8888765431 122344567888899988876643 1222233 99988 999763
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=277.84 Aligned_cols=512 Identities=15% Similarity=0.153 Sum_probs=353.0
Q ss_pred cCHHHHHhhhhhcCCCceeEEECC------ccccHHHHHHHHHHHHHHHHHc-cCCCCCEEEEEcCChHHHHHHHHhhhh
Q 008389 20 LTPLWFLDRAATVHPTRTSVVHGS------TRYTWLQTYQRCRRLASALCKR-SIGLGCTVAIIAPNIPAIYEAHFGVPM 92 (567)
Q Consensus 20 ~t~~~~l~~~a~~~p~~~a~~~~~------~~~Ty~el~~~~~~lA~~L~~~-g~~~gd~V~l~~~~~~~~~~~~lA~~~ 92 (567)
.|+.|+|+..+..+||++|+...+ .++||++|..+|.+++..|... -+++||.|++++++++|++++++||+.
T Consensus 770 ~~ile~Lq~R~a~tp~~~a~~~~n~~~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~~Cly 849 (1363)
T KOG3628|consen 770 LTILEILQWRAAKTPDHIAFTTLNARGATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIYACLY 849 (1363)
T ss_pred HHHHHHHHHHhhcCCCceEEEEeccCCcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHHHHHh
Confidence 789999999999999999999843 7899999999999999999964 789999999999999999999999999
Q ss_pred cCCeeeecccc------CChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchh
Q 008389 93 AGAVLNAVNIR------LNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKY 166 (567)
Q Consensus 93 ~G~~~v~i~~~------~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 166 (567)
+|.+++|++|. .....+..+++.+++.+|+++......++..........+ ..+.++...+...
T Consensus 850 ~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~~~s---~~p~i~~~~~~~~------- 919 (1363)
T KOG3628|consen 850 LGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHVDQS---AIPLILVLPKLPE------- 919 (1363)
T ss_pred cCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHhhhh---cchhhhcccccch-------
Confidence 99999999884 2356678899999999999999877766544322222111 1222222222100
Q ss_pred ccCCChHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCcc
Q 008389 167 ALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMF 246 (567)
Q Consensus 167 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~ 246 (567)
............. ...+......+.+|++-+.--++|.--++.++|..+++.++.......+.+..-++...+.+
T Consensus 920 ---t~~k~~~~~~k~~--~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~~l~~~rpl~~~~~~~ 994 (1363)
T KOG3628|consen 920 ---TIRKRKKNIKKLN--TPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETCQLYKSRPLLGCSSPY 994 (1363)
T ss_pred ---hhhhhhhhhhccC--CCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHHccccCCceEEEecCc
Confidence 0001111111111 11122235668899999999999999999999999999999999999888888888888888
Q ss_pred chhhhHHHHHHhhh-cCeeEEecc----CCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchh-----hhh
Q 008389 247 HCNGWCYTWSLAAL-CGTSICLRQ----VTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVV-----HVN 316 (567)
Q Consensus 247 ~~~g~~~~~~~~~~-g~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr-----~i~ 316 (567)
...|+...++...+ |...+++++ .++..++..|+++++.-.+.+-..++.+.......... ++... .++
T Consensus 995 sGlgf~~wcLlgVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~en-l~~~gnn~s~s~v 1073 (1363)
T KOG3628|consen 995 SGLGFNHWCLLGVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSVEN-LSKRGNNTSSSIV 1073 (1363)
T ss_pred cchhHHHHHHHHHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhccccccch-hhhhhccccccee
Confidence 77887766555554 555555543 47899999999999999999988888877654433222 22211 121
Q ss_pred -ccCCCCCHHHHHHHHhc----CC---eeeeccCCccCcCCcccccC--------------CCCCCCCC--hhhhhhhhc
Q 008389 317 -TAGAAPPPSVLHAMSQK----GF---HVTHTYGLSETYGPSTVCAW--------------KPEWDSLP--PETQARMKA 372 (567)
Q Consensus 317 -~~G~~l~~~~~~~~~~~----~~---~i~~~YG~tE~~~~~~~~~~--------------~~~~~~~~--~~~~~~~~~ 372 (567)
..-+.......+.+.+. +. .+...|+.-=--.++..... .++..... .........
T Consensus 1074 v~~~~RPr~ali~sf~klfa~igLsp~avStsys~r~Np~Ic~r~~sg~~Pt~~y~D~raLR~grV~~ve~~ap~~l~L~ 1153 (1363)
T KOG3628|consen 1074 VPAEERPRIALIASFKKLFAAIGLSPRAVSTSYSSRVNPFICLRSYSGPEPTTVYLDARALREGRVRLVEVGAPHSLLLY 1153 (1363)
T ss_pred eecCCccHHHHHHHHHHHHHHcCCChhhhcccccccCChHhhhccccCCCCcceeechhhhhccceeeeecCCCCccccc
Confidence 12233333334444322 22 23333432211111111000 00000000 001111223
Q ss_pred cCCceeccccceeEeeCCCCCccCCCCCceEEEEEecccccccccCCCc-cchhcc----------cCCccccCceEEEe
Q 008389 373 RQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPK-ANEETF----------ANGWYHTGDLGVKH 441 (567)
Q Consensus 373 ~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~-~~~~~~----------~~g~~~TGDl~~~~ 441 (567)
..|...+++ ++.|++|++-.++..| +.||||+.|.+-+.+|+...+ .....| ..+|-||||+|+..
T Consensus 1154 dSG~~~~~~-~i~IvnPEtk~pc~dg--e~GEIW~~S~hnA~~~~~~~d~~~~~~fn~rl~~g~~~~~sy~RTG~LGFl~ 1230 (1363)
T KOG3628|consen 1154 DSGKLPVYT-DIAIVNPETKGPCRDG--ELGEIWVNSAHNASCSFTIGDELRSNHFNARLSSGDLLGKSYARTGDLGFLR 1230 (1363)
T ss_pred cCCcccccc-eeEEeCCccccccccC--CcceEEeccccccccccccCchhhhhhhhhhccccccccccceeeeeeeeee
Confidence 457788888 8999999999999888 899999999988887775422 222333 23599999999985
Q ss_pred C------C----CcEEEeccccceeeeCceecchHHHHHHH-hcCCCceeeEEEEeecCCCCCcceEEEEEcCCccchhh
Q 008389 442 P------D----NYIEIKDRSKDIIISGGENISSVEVENMM-YLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNE 510 (567)
Q Consensus 442 ~------~----g~l~~~GR~~d~i~~~G~~v~~~~iE~~l-~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~ 510 (567)
. + ..+|++|-.++.+.++|.+++|.+||..+ +.|+.|.+|+|+....- ++++++...+
T Consensus 1231 ~t~~t~~~~e~~~~LyVlG~i~EtlEl~GL~h~p~DIE~TV~~vH~~I~~cavF~~~gl-----vVvviE~~gq------ 1299 (1363)
T KOG3628|consen 1231 RTSLTDANVERHDLLYVLGAIDETLELNGLRHFPSDIETTVERVHPSIGGCAVFQATGL-----VVVVIECHGQ------ 1299 (1363)
T ss_pred eeecccccceeeeeEEEeecccceeeecCcccCcchHHHHHHHhcccccceeeEeeCCe-----EEEEEEecCc------
Confidence 3 2 35899999999999999999999999988 46899999999987542 4555554332
Q ss_pred HHHHHHHHHHHHhcCCCCCCCceee-cCc---ccCCCCccccHHHHHHHHHHcCC
Q 008389 511 QQLAEDIMKFCRAKMPAYWVPKSIV-FGP---LPKTATGKIQKHVLRAKAKEMGP 561 (567)
Q Consensus 511 ~~~~~~l~~~l~~~l~~~~~p~~i~-~~~---lP~t~~GKi~r~~l~~~~~~~~~ 561 (567)
+.+.+-+--.+...|.+|.++..++ |++ +|+++.|..+|..+++.+.+..+
T Consensus 1300 ~~~~~LvPlIv~~vL~eH~iI~dvV~fV~~G~~p~~~~gEK~R~~I~~~w~~~kL 1354 (1363)
T KOG3628|consen 1300 QELADLVPLIVNVVLEEHYIILDVVAFVDKGVFPRNSRGEKQRAHILDSWLAGKL 1354 (1363)
T ss_pred hhHhhhhHHHHHHHHhhcceEEEEEEEecCCccccCCchhhHHHHHHHHHHhccc
Confidence 1122233334455677787777555 666 99999999999999999887754
|
|
| >KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=287.32 Aligned_cols=505 Identities=19% Similarity=0.174 Sum_probs=336.3
Q ss_pred CHHHHHhhhhhcCCCceeEEECC--------ccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhh
Q 008389 21 TPLWFLDRAATVHPTRTSVVHGS--------TRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPM 92 (567)
Q Consensus 21 t~~~~l~~~a~~~p~~~a~~~~~--------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~ 92 (567)
++...+++.+..+|...+..+-. ..+||++.+..+..+++.|...|...|+.|++++..+.++++..++.++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~i~~~t~r~~~~~~n~~~q~l~~~~~~~~~~v~i~~~~~~d~~v~v~~~~~ 116 (1032)
T KOG1178|consen 37 TLEDSFRRELAEAPENTGHVIIPTASESGIIDSFTYRLIRLLSNIIAQFLVSLGSLRGTTVAIYMLPSVDLVVSVFAVLA 116 (1032)
T ss_pred chhhHHHHHHhhcccCCCceEeecccccccccchhhhhhhcccchhHHHhhhcccccCceEEEeccCcCCeeeeeeehhh
Confidence 56667888888888888876621 7899999999999999999999999999999999999999999999999
Q ss_pred cCCeeeeccccCC----hHH---HHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccch
Q 008389 93 AGAVLNAVNIRLN----APT---IAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLK 165 (567)
Q Consensus 93 ~G~~~v~i~~~~~----~~~---l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 165 (567)
.|..+.+++|.++ ++. +.+.+......++ ..+. ++.+.-++..+..
T Consensus 117 ~g~~~~~idp~~~~~e~~~~~~~ia~~~~s~~~~i~-------~~l~------------------i~~~~~~~~~~~~-- 169 (1032)
T KOG1178|consen 117 AGLTFLPIDPSWPNSELAGYLMRIAHFLTSVELEIV-------RRLN------------------IIDILLNSLFPKL-- 169 (1032)
T ss_pred cceEEEEecCCCcccccchHHHhhhhhheeccceeh-------hhhh------------------hHHHHhhcccccc--
Confidence 9999999999998 221 1111111111111 1000 0000000000000
Q ss_pred hccCCChHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCc
Q 008389 166 YALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPM 245 (567)
Q Consensus 166 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~ 245 (567)
........|..+..... ........++..+.+.||||+||.||+|..+|..+.+...+....+.....+++-.....
T Consensus 170 -sv~~~~~~f~~~~~~~~--~r~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f~~t~s~~~~~~~~~ 246 (1032)
T KOG1178|consen 170 -SVETIADSFQMVLHNED--TREIRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTFPPTGSDRFTFKTSV 246 (1032)
T ss_pred -chhhccchhhhhhccCC--CcceeeecccccceEeecccccccccccchhHHHHHhhhhhccccCCcCccchhhhhhee
Confidence 00000011111111111 111122345668889999999999999999999999999888888888877765333333
Q ss_pred cchhhhHHHHHHhhhcCeeEEec-c---CCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCC----C-----cC---CC
Q 008389 246 FHCNGWCYTWSLAALCGTSICLR-Q---VTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSED----T-----IL---PL 309 (567)
Q Consensus 246 ~~~~g~~~~~~~~~~g~~~~~~~-~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~----~-----~~---~l 309 (567)
+........+.++++.+..+..+ . .++.++...+++++++..+.+|++.++++...... . .+ ..
T Consensus 247 ~~~d~i~~~~~~~L~~~~~l~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~~~~l~~~~~~~dl~~~~ 326 (1032)
T KOG1178|consen 247 YFDDTIQKFIGALLFNGNNLLVPTATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAILTTSLPLLEHAFSLSDLLTKR 326 (1032)
T ss_pred ecccchHHHHhhHhhcCceeecccccCccchhhHHHHHHhhhheeeeechhhhhhhhhhcCcchhhhhhhhhcccccccc
Confidence 33333344455555555544442 2 34799999999999999999999988888765442 0 01 13
Q ss_pred CchhhhhccCCCCCHHHHHHHHhc---CCeeeeccCCccCcCCcccccCCCCCCCCChhhh---hhhhccCCceeccccc
Q 008389 310 PHVVHVNTAGAAPPPSVLHAMSQK---GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQ---ARMKARQGVRFIGLEK 383 (567)
Q Consensus 310 ~~lr~i~~~G~~l~~~~~~~~~~~---~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~G~~~~~~~~ 383 (567)
+.|+....+|++....+...+... ++. ..-|+.++..+........+.-..+..+.. .......|.+. -
T Consensus 327 ~~Lkl~~~~~ep~~v~l~~s~~~~~~~~~~-~~~y~s~~~~~~~s~~~~~~s~~ll~~~~v~~~p~~~~~~~~~~----~ 401 (1032)
T KOG1178|consen 327 SCLKLVVLGGEPLLVSLYTSTFDLLAEIFF-GLPYLSTDPTGLVSYDDFSPSKVLLTNENVYSVPKFDSIIGSLT----V 401 (1032)
T ss_pred hhheeeeecCCccchhhhhhhhhcccceee-eecccCCCCccceeHHhhCcccceecceeEEeccchhhccCCCc----c
Confidence 478888999999998888855533 222 233888888777665443322111000000 00000111111 1
Q ss_pred eeEeeCCCCCccCCC--CCceEEEEEecccccccccCCCccchhcc------cCCccccCceEEEeCCCcEEEeccccce
Q 008389 384 LDVIDTRTQQPVPAD--GKTIGEIVMSGNVVMKGYLKNPKANEETF------ANGWYHTGDLGVKHPDNYIEIKDRSKDI 455 (567)
Q Consensus 384 ~~i~d~~~~~~~~~~--~~~~Gei~v~~~~~~~gy~~~~~~~~~~~------~~g~~~TGDl~~~~~~g~l~~~GR~~d~ 455 (567)
+++.... +.+...+ ..+.|.-...+..+..| +..++.....+ .+..|+|||.|+..++|.+.+.||.|++
T Consensus 402 ~~~~~~~-~~~~~~~v~~~~l~~~~~~~~~~~~g-~~~~~~~~~~~~~~d~~~~r~y~tgD~gr~l~ng~l~~~GR~d~q 479 (1032)
T KOG1178|consen 402 LESLYRA-GGEGEGGVGKGCLGAEQNLSSWVVDG-YSTPENFLPNFLTVDGVKARIYRTGDNGRSLKNGGLEISGRADRQ 479 (1032)
T ss_pred eeeeecc-CcccCCcccceeecccccccceeecc-ccchhhcCCcccccccchhhcccccccceeecCCCEEEEEeccce
Confidence 2222221 3333322 01222222223344445 22333222222 3558999999999999999999999999
Q ss_pred eeeCceecchHHHHHHHhcCCCceeeEEEEeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceee
Q 008389 456 IISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIV 535 (567)
Q Consensus 456 i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~ 535 (567)
||.+|.++...+|+..+..+|.|.++.+....+.+.++++.+|++...+...... ..|+.++..+|+.|++|..++
T Consensus 480 IK~rG~Ri~L~ei~t~v~~~p~v~~~itl~~~~~~~~~~l~aFvv~~~~~~~~~~----~~i~~~l~~~La~y~vPs~~V 555 (1032)
T KOG1178|consen 480 IKDRGVRIELGELNTVVEVHPDVKEAITLARENSTVGQTLLAFVVERGGSKSVLI----RDIRNYLKKELASYMLPSLVV 555 (1032)
T ss_pred EEEccEEEehhhhchhhccCcchhhhheeeeeccccCceEEEEEeccCCCCchhH----HHHHHhhcccccceecceEEE
Confidence 9999999999999999999999999999999999889999999998887744443 789999999999999999888
Q ss_pred cCc-ccCCCCccccHHHHHHHHHHcCCccccC
Q 008389 536 FGP-LPKTATGKIQKHVLRAKAKEMGPVRKSK 566 (567)
Q Consensus 536 ~~~-lP~t~~GKi~r~~l~~~~~~~~~~~~~~ 566 (567)
.++ +|+|++||||+++|.+...+...+-.|+
T Consensus 556 ~l~~vPl~~~GKvDkkaL~~~~s~~~~~~~s~ 587 (1032)
T KOG1178|consen 556 PLAKVPLNPNGKVDKKALLEYNSKLTNVQDSS 587 (1032)
T ss_pred EhhhCCcCCCCCcChhhhhhhhhhhcccccce
Confidence 777 9999999999999999777766655543
|
|
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.4e-30 Score=262.78 Aligned_cols=321 Identities=17% Similarity=0.133 Sum_probs=218.7
Q ss_pred CCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHH---hccCCCcEEEEecCccchhhhHHH-HHHhhhcCeeEEe
Q 008389 192 QDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALI---WGMNEGAVYLWTLPMFHCNGWCYT-WSLAALCGTSICL 267 (567)
Q Consensus 192 ~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~g~~~~-~~~~~~g~~~~~~ 267 (567)
.+.++++.+++||||||.||+|.+||+++.......... .+++++|+++...+..+..+.... ..+...|++++..
T Consensus 83 ~~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~ 162 (445)
T TIGR03335 83 ADWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPE 162 (445)
T ss_pred CCHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcC
Confidence 345688899999999999999999999988776555443 388999999999888776554433 3344556654332
Q ss_pred ccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcC-CCCchhhhhccCCCCCHHHHHHHHh-cCCeeeeccCCcc
Q 008389 268 RQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTIL-PLPHVVHVNTAGAAPPPSVLHAMSQ-KGFHVTHTYGLSE 345 (567)
Q Consensus 268 ~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~-~l~~lr~i~~~G~~l~~~~~~~~~~-~~~~i~~~YG~tE 345 (567)
. .....++.|+++++|.+.++|+.+..|++........ ...++|.+++|||++++++++.+++ +++++++.||+||
T Consensus 163 ~--~~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~~~~~~lr~ii~gGE~l~~~~r~~ie~~~g~~v~~~YG~TE 240 (445)
T TIGR03335 163 G--KCTFPIRIIESYRPTGIVASVFKLLRLARRMKAEGIDPAESSIRRLVVGGESFADESRNYVEELWGCEVYNTYGSTE 240 (445)
T ss_pred C--chhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCcceEEEEcCCCCCHHHHHHHHHHhCCcEEecCChhh
Confidence 2 2356789999999999999999988887643332221 1468999999999999999998885 5999999999999
Q ss_pred CcCCcccccCCCCCCCCChhhhhhhhccCCceec--cccceeEeeCCCCCccCCCCCceEEEEEeccccc-----ccccC
Q 008389 346 TYGPSTVCAWKPEWDSLPPETQARMKARQGVRFI--GLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVM-----KGYLK 418 (567)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~--~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~-----~gy~~ 418 (567)
++ ++..|... .|..++ .+ .++|+|++++.++++| +.|||++++.... ...+
T Consensus 241 ~~-~~~~c~~~-----------------~g~h~~~d~~-~vEIvDp~~~~~vp~G--e~GELvvT~L~~~~~r~~~Pli- 298 (445)
T TIGR03335 241 GT-MCGECQAV-----------------AGLHVPEDLV-HLDVYDPRHQRFLPDG--ECGRIVLTTLLKPGERCGSLLI- 298 (445)
T ss_pred hh-heEEecCC-----------------CCccccCCce-EEEEEcCCCCCCCcCC--CceEEEEEecCCCCccCCceEE-
Confidence 85 33333211 122232 34 6899999988889988 8999999886431 1122
Q ss_pred CCccchhcccCCccccCceEEEeC-C----C----cEEEeccccceeeeCceecchHHHHHHHhcC---CCce-eeEEEE
Q 008389 419 NPKANEETFANGWYHTGDLGVKHP-D----N----YIEIKDRSKDIIISGGENISSVEVENMMYLH---PAVL-EASVVA 485 (567)
Q Consensus 419 ~~~~~~~~~~~g~~~TGDl~~~~~-~----g----~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~---~~i~-~~~v~~ 485 (567)
.|+|||++++.. + | .+...||.||+++++|.+++|.+||++|.+. +++. +..++.
T Consensus 299 ------------RYrtgD~~~~~~~~~C~CGr~~~r~~~~gR~dd~~~~~g~~~~p~~ie~~l~~~~~~~~~~~~~~~~~ 366 (445)
T TIGR03335 299 ------------NYDTEDTTVVISRDRCPCGRTHMRILNPEREAETIWISGVPFNRVDVERAVFQRENMDSLTGEYEAFL 366 (445)
T ss_pred ------------EeecCceEEEecCCCCCCCCCcceeCCCcccCceEEECCEEeCHHHHHHHHhccCCCCCCCccEEEEE
Confidence 299999999732 2 2 2445699999999999999999999999994 5554 344544
Q ss_pred eecCCCCCcceEEEEEcCCccchhhHHHHHHHHHH----H---HhcCCCCCCCceeecCc---ccCC-CCccccH
Q 008389 486 RADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKF----C---RAKMPAYWVPKSIVFGP---LPKT-ATGKIQK 549 (567)
Q Consensus 486 ~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~----l---~~~l~~~~~p~~i~~~~---lP~t-~~GKi~r 549 (567)
.........+.+.|+..+.. ..+.+.+.+.+.+. + ++.+....+...+.+++ +||+ +.||..|
T Consensus 367 ~~~~~~~~~~~v~~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~r 440 (445)
T TIGR03335 367 YGEEEGEITLRVSLECEDKD-NCSIHDIQENFTGTFLKYKPELIGSYDEGIFQILVNFTGPGELELHKIKGRPKR 440 (445)
T ss_pred ecCCCCCceEEEEEEecCcc-cchHHHHHHHHHHHHhhhhhhhhhhhhcceEEEEEEEeCCCCccccccCCCcee
Confidence 33322223455666665543 22233333334333 1 11111222223344433 9998 4699765
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-28 Score=234.71 Aligned_cols=323 Identities=18% Similarity=0.231 Sum_probs=237.5
Q ss_pred CCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHh---ccCCCcEEEEecCcc-chhhhHHHHHHhhhcCeeEEe
Q 008389 192 QDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIW---GMNEGAVYLWTLPMF-HCNGWCYTWSLAALCGTSICL 267 (567)
Q Consensus 192 ~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~---~~~~~d~~~~~~p~~-~~~g~~~~~~~~~~g~~~~~~ 267 (567)
...++...+..||||||+|+.+.+|+..+..++..+.+.+ +...+|++..+.... +..|+.....+--.|.+++-.
T Consensus 87 ~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~ 166 (438)
T COG1541 87 VPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPI 166 (438)
T ss_pred ccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEcc
Confidence 3445666788999999999999999999888877776654 788999988877642 333334444444466666656
Q ss_pred ccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcC-CCCchhhhhccCCCCCHHHHHHHH-hcCCeeeeccCCcc
Q 008389 268 RQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTIL-PLPHVVHVNTAGAAPPPSVLHAMS-QKGFHVTHTYGLSE 345 (567)
Q Consensus 268 ~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~-~l~~lr~i~~~G~~l~~~~~~~~~-~~~~~i~~~YG~tE 345 (567)
..-+....+.+++++++|++.++|+.+..|++...+.... .-.++|.+++|+|+.+++.++.+. .+|+..++.||+||
T Consensus 167 ~~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~~~~~~lk~~i~gaE~~see~R~~ie~~~g~~~~diYGltE 246 (438)
T COG1541 167 SGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPDKLSLKKGIFGAEPWSEEMRKVIENRFGCKAFDIYGLTE 246 (438)
T ss_pred CCccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCChhhcceeEEEEecccCCHHHHHHHHHHhCCceeecccccc
Confidence 6668899999999999999999999999999876665311 145889999999999999999999 55999999999999
Q ss_pred CcCCc-ccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEecccccccccCCCccch
Q 008389 346 TYGPS-TVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANE 424 (567)
Q Consensus 346 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~ 424 (567)
..+.. ..|......+. .-+.. .++|+||++|++++.| +.|||+++..+- .....
T Consensus 247 ~~g~g~~eC~~~~glhi---------------~eD~~-~~Ei~dP~t~e~l~dg--e~GelV~T~L~~-------~~~Pl 301 (438)
T COG1541 247 GFGPGAGECTERNGLHI---------------WEDHF-IFEIVDPETGEQLPDG--ERGELVITTLTK-------EGMPL 301 (438)
T ss_pred ccCCcccccccccCCCc---------------chhhc-eeeeecCCcCccCCCC--CeeEEEEEeccc-------cCcce
Confidence 97773 45544332111 11223 7999999999999999 889999987531 11111
Q ss_pred hcccCCccccCceEEEeCC----C-----cEEEeccccceeeeCceecchHHHHHHHhcCCCce-eeEEEEeecCCCCCc
Q 008389 425 ETFANGWYHTGDLGVKHPD----N-----YIEIKDRSKDIIISGGENISSVEVENMMYLHPAVL-EASVVARADERWGES 494 (567)
Q Consensus 425 ~~~~~g~~~TGDl~~~~~~----g-----~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~-~~~v~~~~~~~~g~~ 494 (567)
-.|+|||++.+.++ | -..+.||.||++.+.|.+|+|.+||.++.+.+.+. +.+++... ......
T Consensus 302 -----IRYrtgDit~i~~~~C~cGr~~~ri~~I~GR~dD~l~~~G~~vfp~~ie~~l~~~~~~~~~yqi~~~~-~~~~d~ 375 (438)
T COG1541 302 -----IRYRTGDITVILSDPCGCGRTHRRIERIEGRSDDMLIVRGVNVFPSQIERVLLQIPEVTPHYQIILTR-NGGLDE 375 (438)
T ss_pred -----EEEEcCCeeEecccCCCCCCccccccccCcccccEEEECCEEeCHHHHHHHHhcccCCCceEEEEEec-CCCCce
Confidence 13999999999863 2 24689999999999999999999999999999998 77777666 444567
Q ss_pred ceEEEEEcCCcc-chhhHHHHHHHHHHHHhcCCCCCCCceeecC---cccCCCCccccH
Q 008389 495 PCAFVTLKPEVD-KSNEQQLAEDIMKFCRAKMPAYWVPKSIVFG---PLPKTATGKIQK 549 (567)
Q Consensus 495 ~~~~v~~~~~~~-~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~---~lP~t~~GKi~r 549 (567)
+.+.|+..++.. ..+..++...+.+.+++.+. ....|.++ .+|||-. |..|
T Consensus 376 L~V~vE~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~v~~v~~g~l~r~~~-K~kr 430 (438)
T COG1541 376 LTVRVELENEAEELEDERRLAKKLIKNIKSELG---VRVEVELVEPGELPRTEG-KAKR 430 (438)
T ss_pred EEEEEEecCcccchHHHHHHHHHHHHHHHhhcC---CceEEEEEeccceecccC-ceeE
Confidence 888888876521 22222233455555555454 22333333 3999985 6543
|
|
| >TIGR03089 conserved hypothetical protein TIGR03089 | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.4e-26 Score=206.92 Aligned_cols=218 Identities=11% Similarity=0.059 Sum_probs=163.6
Q ss_pred HhhhhhcCCCceeEEEC-C-----ccccHHHHHHHHHHHHHHHHH-ccCCCCCEEEEEcCChHHHHHHHHhhhhcCCeee
Q 008389 26 LDRAATVHPTRTSVVHG-S-----TRYTWLQTYQRCRRLASALCK-RSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLN 98 (567)
Q Consensus 26 l~~~a~~~p~~~a~~~~-~-----~~~Ty~el~~~~~~lA~~L~~-~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v 98 (567)
+...+..+|+++|+++. + .++||+||.+++.++|+.|++ .|+++||+|+++++|++++++++|||+++|++++
T Consensus 2 ~~~~~~~~p~~~al~~~~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~v~v 81 (227)
T TIGR03089 2 LSPLLAADPASPRLTFYDDATGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGVEVV 81 (227)
T ss_pred hhhhhhhCCCCcEEEEEcCCCCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEE
Confidence 46678889999999853 2 369999999999999999998 7999999999999999999999999999999999
Q ss_pred eccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHHHHH
Q 008389 99 AVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKF 178 (567)
Q Consensus 99 ~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (567)
|++ .+++++++++++..+.+.. . ..++.+........... ....+...+.+.
T Consensus 82 p~n-------------~s~a~~~v~~~~~~~~~~~-------------~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 133 (227)
T TIGR03089 82 LAG-------------DPDADVVVTGPDRLAAAAG-------------S-GEVVALSLDPLGRRVAG-ELPPGVIDFAPE 133 (227)
T ss_pred eCC-------------CCCCCEEEeCcchhhhccc-------------C-CceEEEeccccccCCCC-CCCCcccchhhh
Confidence 995 6799999999887665320 1 22333321100000000 001223466666
Q ss_pred HhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhhHH-HHHH
Q 008389 179 LQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCY-TWSL 257 (567)
Q Consensus 179 l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~-~~~~ 257 (567)
+........+.....++|++.++||||+ +|++++.+. ...+++++|+++ ..|++|.+|+.. .+..
T Consensus 134 ~~~~~~~~~~~~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~~l~~~D~~l-~~Pl~H~~gl~~~~~~~ 199 (227)
T TIGR03089 134 VRVHGDQFAPYEPPDATAPALVAGGGEW---------TGAELVAAA----RAAGLPPGDRVL-VLAWTDLEDFLATLLAP 199 (227)
T ss_pred hhccCCCCCCCCCCCCCcceeeeccccc---------cHHHHHHHH----hhcCCCCCCeEE-ecCCCchHHHHHHHHHH
Confidence 6543333222213456899999999986 666665554 566789999999 999999999965 5566
Q ss_pred hhhcCeeEEeccCCHHHHHHHHHhhCce
Q 008389 258 AALCGTSICLRQVTAKAVYSAIAKYGVT 285 (567)
Q Consensus 258 ~~~g~~~~~~~~~~~~~~~~~i~~~~~t 285 (567)
+..|+++++++.+++..+++.|+++|+|
T Consensus 200 l~~G~t~v~~~rFd~~~~l~~i~~~~vT 227 (227)
T TIGR03089 200 LAAGGSLVLVTHPDPARLDQIAETERVT 227 (227)
T ss_pred hccCceEEEecCCCHHHHHHHHHhhcCC
Confidence 6779999999999999999999999987
|
This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501. |
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.7e-21 Score=196.20 Aligned_cols=502 Identities=17% Similarity=0.101 Sum_probs=333.4
Q ss_pred HHHHHhhhhhcCCCceeEEECC-----ccccHHHHHHHHHHHHH-HHHHccCCCCCEEEEEcCCh--HHHHHHHHhhhhc
Q 008389 22 PLWFLDRAATVHPTRTSVVHGS-----TRYTWLQTYQRCRRLAS-ALCKRSIGLGCTVAIIAPNI--PAIYEAHFGVPMA 93 (567)
Q Consensus 22 ~~~~l~~~a~~~p~~~a~~~~~-----~~~Ty~el~~~~~~lA~-~L~~~g~~~gd~V~l~~~~~--~~~~~~~lA~~~~ 93 (567)
+..+++..-..++...|.+.-+ ..+||..+..++.+.|+ .|.+.|+.++|+|.+++..+ +++++..++|...
T Consensus 96 ~~avl~~~~nhs~~~ta~i~id~kgk~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~vvL~Y~~~e~ie~~isl~gc~l~ 175 (1363)
T KOG3628|consen 96 IIAVLRYRRNHSATSTAHICIDKKGKATSITWDKLLNRAEKVAHVELNKSGLKPGDRVVLYYRKCEAIEFLISLFGCFLL 175 (1363)
T ss_pred hHHHHHhhccCCCCCceEEEEcCCCceeeeeHHHHHHHHHhhccHHhhccCCCCCcEEEEEEEhhhhhHHhhhhcccccc
Confidence 4566666667788888887733 78999999999999999 66677999999999998665 8999999999999
Q ss_pred CCeeeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChH
Q 008389 94 GAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAV 173 (567)
Q Consensus 94 G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 173 (567)
|.+++|+.+..+.+++..+++..+.+++++.......+........ ....+. ..+..
T Consensus 176 g~~~vp~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~~~~s--------~~k~v~---------------~w~t~ 232 (1363)
T KOG3628|consen 176 GIVAVPLSELSSSEELKDIVNPTPERVALTTEAGERAFINDNSPVS--------LAKAVA---------------WWKTN 232 (1363)
T ss_pred ceeeccchhhhhhhhhhcccCCCccceEeehhhhHHHhhhccCccc--------HHHHHH---------------hhhcc
Confidence 9999999999999999999999999999987766544332210000 000000 00000
Q ss_pred HHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHH--------------------HHhcc
Q 008389 174 EYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVA--------------------LIWGM 233 (567)
Q Consensus 174 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~--------------------~~~~~ 233 (567)
++. .....+....++.+-. ..+|-||.+++|.--+++.+|+ ++.+..... ..+++
T Consensus 233 ~~k---~~~~~~k~~~P~~~~~-~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v~~~ 307 (1363)
T KOG3628|consen 233 DFK---GNYTKDKIKKPRMQLP-YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHVFPV 307 (1363)
T ss_pred ccc---ceeehhhccCCceeee-eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhcccc
Confidence 000 0000011111122223 7889999999999999999998 444332221 12345
Q ss_pred CCCcEEEEecCccchhhhHHHH-HHhhhcCeeEEecc---CCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCC-----
Q 008389 234 NEGAVYLWTLPMFHCNGWCYTW-SLAALCGTSICLRQ---VTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSED----- 304 (567)
Q Consensus 234 ~~~d~~~~~~p~~~~~g~~~~~-~~~~~g~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~----- 304 (567)
...+.++.........|+..+. .+.+.|.|.+.+++ +.|..+.+++.+++.+++.+--..+++........
T Consensus 308 ~~~~~~l~~~~~s~~lGlilGV~~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~~p~a~~ 387 (1363)
T KOG3628|consen 308 PSEDVLLTNLDPSQQLGLILGVLVALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQEDPKATL 387 (1363)
T ss_pred CcccceeeccCcccccchhhhhhhhhhcCceeecCchhhcCCCcchhhhhccceeEEEeecccccCcccccccCCccccc
Confidence 5677777777777777776554 45566777777766 67899999999999999998877776655332211
Q ss_pred -----CcCCCCchhhhhccCCCCCHHHHHHHHhc-----CC---e---------------eeeccCCccCcCCcccccCC
Q 008389 305 -----TILPLPHVVHVNTAGAAPPPSVLHAMSQK-----GF---H---------------VTHTYGLSETYGPSTVCAWK 356 (567)
Q Consensus 305 -----~~~~l~~lr~i~~~G~~l~~~~~~~~~~~-----~~---~---------------i~~~YG~tE~~~~~~~~~~~ 356 (567)
...+++++|.+++.-..++.+..+..... |. + ....=+++|.+.........
T Consensus 388 s~~k~~t~d~sslk~C~Vtc~~vd~~~~~ivs~~wlk~lg~~~~~~~~~p~l~ll~hGgi~is~k~~~~~~~~~~r~p~~ 467 (1363)
T KOG3628|consen 388 SFKKYKTPDLSSLKGCMVTCTAVDTEFQEIVSDRWLKPLGETNVKVVDFPILCLLWHGGIPISFKDWMEIGTVSIRRPEQ 467 (1363)
T ss_pred chhhccCCCccceeeeEEeeeecchHHHHHHHHhhcccccCcCcceeechhhhhhhcCceEEEeccchhhhcccccCccc
Confidence 11237899999999999998876655422 22 1 11112223333222211110
Q ss_pred CCC-----------------C--CCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEeccccccccc
Q 008389 357 PEW-----------------D--SLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYL 417 (567)
Q Consensus 357 ~~~-----------------~--~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~~gy~ 417 (567)
... . ..........+..+|...|+-..+.++++++.+.|..+ ++|||||.+++...+||
T Consensus 468 ~~~~~~~e~ll~~~~L~~~~V~v~~e~~is~~s~kd~~~i~~g~~t~~vv~~~t~~LC~~~--eVGEIwVsS~~~~~~~~ 545 (1363)
T KOG3628|consen 468 MADTLPGEGLLSKEALKLNEVEVDTEDDISSLSVKDVLCIMPGDATLAVVNPDTNQLCKTD--EVGEIWVSSNSLGKLFY 545 (1363)
T ss_pred ccccCccceeeeccccccceEEEcchhhhhhcCccccceecccceEEEEeCCCcccccccC--cceeEEEecCCccccee
Confidence 000 0 00111222334566777776657899999999999998 89999999999999999
Q ss_pred CCCccchhccc-------------CCccccCceEEEeCCCcEEEeccccceee-eCceecchHH----------HHHHHh
Q 008389 418 KNPKANEETFA-------------NGWYHTGDLGVKHPDNYIEIKDRSKDIII-SGGENISSVE----------VENMMY 473 (567)
Q Consensus 418 ~~~~~~~~~~~-------------~g~~~TGDl~~~~~~g~l~~~GR~~d~i~-~~G~~v~~~~----------iE~~l~ 473 (567)
..+..+...|. ..+.|||-+|+++ +|.++++|-.+|.+. ..|..++..+ |+.+++
T Consensus 546 al~~~t~~~F~~~~~~s~~~~~~n~~FmRtGLlGFv~-~gki~vl~~k~d~llq~~~~~h~~d~iv~thya~~~iktV~R 624 (1363)
T KOG3628|consen 546 ALDKQTENTFKATPVESSGKPPSNVPFMRTGLLGFVH-NGKIYVLGLKEDGLLQVSGWRHNADDIVATHYAVELIKTVMR 624 (1363)
T ss_pred eccccccceEEeeeccccCCCCccchhhhhcceeeee-CCeEEEEEechhhhhhhhhhhhhhhhhHhhHHHHHHHHHHHh
Confidence 99888888772 2389999999999 777777777777776 7887766544 455566
Q ss_pred cCCCceeeEEEEeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCc-e-eecCc---ccCCCCcccc
Q 008389 474 LHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPK-S-IVFGP---LPKTATGKIQ 548 (567)
Q Consensus 474 ~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~-~-i~~~~---lP~t~~GKi~ 548 (567)
..+.|.++.++- .++.++.++..+...+.+.- +.+.+.++. +...+... . +.+++ +|||+-|-+.
T Consensus 625 ~v~~VF~~saf~------~E~~~Vv~~esP~a~e~~~~---q~~~~v~q~-l~~iHqv~vyCilivP~~tLPrt~~~Gi~ 694 (1363)
T KOG3628|consen 625 GVIAVFDVSAFE------DEHIVVVVLESPDATEENSF---QWMSRVFQA-LDSIHQVGVYCILIVPANTLPRTPLGGIH 694 (1363)
T ss_pred ccceEEEEeeee------cceEEEEEEeCcchhhhhhh---hHHHHHHHH-HHHHhcccceEEEEeccccCCCccccccc
Confidence 778888888876 23466666666655332221 222222222 22222222 2 22444 9999998899
Q ss_pred HHHHHHHHHHcCCccc
Q 008389 549 KHVLRAKAKEMGPVRK 564 (567)
Q Consensus 549 r~~l~~~~~~~~~~~~ 564 (567)
-..+++.|.++.++..
T Consensus 695 ~~~~k~~F~~G~L~~~ 710 (1363)
T KOG3628|consen 695 NNECKQAFLEGSLPPS 710 (1363)
T ss_pred cHHHHHHHHcCCCCcc
Confidence 9999999999987754
|
|
| >PRK09188 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.3e-21 Score=186.39 Aligned_cols=117 Identities=21% Similarity=0.262 Sum_probs=106.8
Q ss_pred cccCCccccCceEEE-eCCCcEEEeccccceeeeCc---eecchHHHHHHHhcCCCceeeEEEEeecCCCCCcceEEEEE
Q 008389 426 TFANGWYHTGDLGVK-HPDNYIEIKDRSKDIIISGG---ENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTL 501 (567)
Q Consensus 426 ~~~~g~~~TGDl~~~-~~~g~l~~~GR~~d~i~~~G---~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~ 501 (567)
.|.+|||+|||+|++ |++|++++.||.+ +| ++|+|. ||+++.++|+|.+|+|++++++.+|+.++|+|++
T Consensus 205 ~~~dgW~~TGDlg~~~d~dG~l~~~gR~~-----~G~~i~nV~p~-IE~~L~~hp~V~eaaVvgvpd~~~ge~v~A~Vv~ 278 (365)
T PRK09188 205 LPSRIWLATGKKVYNFITRGLFSWSDGEG-----TGDRIDNEAPA-IQAALKSDPAVSDVAIALFSLPAKGVGLYAFVEA 278 (365)
T ss_pred cccCcEEeCCCEEEEEcCCCeEEEEecCc-----CCcCceeeCHH-HHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEE
Confidence 347899999999998 6999999999998 78 799999 9999999999999999999999999999999997
Q ss_pred cCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHH
Q 008389 502 KPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKA 556 (567)
Q Consensus 502 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~ 556 (567)
... .+. ++++++++++|+. ++|..+.+++ +|+|++||++|+.|+.++
T Consensus 279 ~~~---~~~----~el~~~l~~~L~~-kvP~~v~~v~~lP~t~~GKi~R~~Lr~~~ 326 (365)
T PRK09188 279 ELP---ADE----KSLRARLAGAKPP-KPPEHIQPVAALPRDADGTVRDDILRLIA 326 (365)
T ss_pred CCC---CCH----HHHHHHHHhhchh-cCCcEEEEECCCCCCCCCCccHHHHHHHh
Confidence 642 233 6899999999999 9999999888 999999999999999886
|
|
| >TIGR02304 aden_form_hyp probable adenylate-forming enzyme | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.6e-17 Score=162.33 Aligned_cols=253 Identities=14% Similarity=0.129 Sum_probs=164.6
Q ss_pred eEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHH---hccCCCcEEEEecCccchhhhHHHHHHhhhcCe-eEEe-ccCC
Q 008389 197 SIALGYTSGTTASPKGVVLSHRGAYLMSLSVALI---WGMNEGAVYLWTLPMFHCNGWCYTWSLAALCGT-SICL-RQVT 271 (567)
Q Consensus 197 ~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~-~~~~-~~~~ 271 (567)
-..+..||||||.|-.+..+.............. .++..++++..... ..+..+.. ...... .-.+ -..+
T Consensus 101 ~~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~~~g~r~a~~~~---~~~~ly~~--~~~~~~~~~~~~l~~~ 175 (430)
T TIGR02304 101 NISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGLFAKHRIAFFLR---ADNNLYQS--VNNRWISLDFFDLLAP 175 (430)
T ss_pred cEEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCccccccCCcEEEEEc---cChhHHHH--HHhccceeeecCCCcC
Confidence 4457789999999999999998765443332222 24556665554421 11111111 111111 1111 1256
Q ss_pred HHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHHHh-cCCeeeeccCCccCcCCc
Q 008389 272 AKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQ-KGFHVTHTYGLSETYGPS 350 (567)
Q Consensus 272 ~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~-~~~~i~~~YG~tE~~~~~ 350 (567)
.+.+++.|++++|+++.++|+.+..|++........ ..++.++++||.+++..++.+++ +|+++++.||+|| |.++
T Consensus 176 ~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l~--~~~k~ii~~~E~l~~~~r~~Ie~~fg~~V~~~YG~tE-g~la 252 (430)
T TIGR02304 176 FQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGELT--IKPKKVISVAEVLEPQDRELIRNVFKNTVHQIYQATE-GFLA 252 (430)
T ss_pred HHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCCC--CCceEEEEccCCCCHHHHHHHHHHhCCCeeEccCCch-hheE
Confidence 789999999999999999999999999865544332 36899999999999999999984 5999999999999 6666
Q ss_pred ccccCCCCCCCCChhhhhhhhccCCceecccccee--EeeCCCCCccCCCCCceEEEEEeccc-ccccccCCCccchhcc
Q 008389 351 TVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLD--VIDTRTQQPVPADGKTIGEIVMSGNV-VMKGYLKNPKANEETF 427 (567)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~--i~d~~~~~~~~~~~~~~Gei~v~~~~-~~~gy~~~~~~~~~~~ 427 (567)
..|..+. ++. ..+...++ ++|++ ++ +..++++-. -....+
T Consensus 253 ~eC~~g~-lHl----------------~ed~~~vE~~ivD~~-~~---------~~~ViT~L~n~~~PlI---------- 295 (430)
T TIGR02304 253 STCRCGT-LHL----------------NEDLVHIEKQYLDEH-KR---------FVPIITDFTRTTQPIV---------- 295 (430)
T ss_pred EecCCCC-EEE----------------ccccEEEEeeEECCC-Cc---------eEEEEecCCCccceEE----------
Confidence 6653221 111 11111345 77866 22 344665532 222222
Q ss_pred cCCccccCceEEEeCC----C----cE-EEeccccceeee---Ccee--cchHHHHHHH-hcCCCceeeEEEEeecCCCC
Q 008389 428 ANGWYHTGDLGVKHPD----N----YI-EIKDRSKDIIIS---GGEN--ISSVEVENMM-YLHPAVLEASVVARADERWG 492 (567)
Q Consensus 428 ~~g~~~TGDl~~~~~~----g----~l-~~~GR~~d~i~~---~G~~--v~~~~iE~~l-~~~~~i~~~~v~~~~~~~~g 492 (567)
.|+|||++.+.++ | .+ .+.||.+|++++ +|.. ++|..++..+ ...+.|.+.+++.....
T Consensus 296 ---RYrtGD~~~~~~~~C~CGr~~~~i~~I~GR~dD~l~~~~~~G~~v~v~p~~~~~~i~~~~~~i~~yQi~Q~~~~--- 369 (430)
T TIGR02304 296 ---RYRLNDILVESEQPCSCGSATMAIERIEGRQDDIFQLITRSGDEQTVFPDFIRRVILFTLPLIVEYRVLQTGSA--- 369 (430)
T ss_pred ---eeeCCCEEEeCCCCCCCCCcccccCCccCccCCEEEEecCCCCeEEeCHHHHHHHHHhcCCCCceEEEEEccCC---
Confidence 2999999988644 2 23 488999999984 4544 5999999874 46789999988765332
Q ss_pred CcceEEEEE
Q 008389 493 ESPCAFVTL 501 (567)
Q Consensus 493 ~~~~~~v~~ 501 (567)
.+.+.++.
T Consensus 370 -~l~v~~~~ 377 (430)
T TIGR02304 370 -QLELIADC 377 (430)
T ss_pred -eEEEEEEe
Confidence 36666665
|
Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase. |
| >PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.8e-11 Score=90.20 Aligned_cols=69 Identities=49% Similarity=0.854 Sum_probs=59.3
Q ss_pred HHHHHHhcCCCceeeEEEEeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeec---Cc-ccCC
Q 008389 467 EVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVF---GP-LPKT 542 (567)
Q Consensus 467 ~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~---~~-lP~t 542 (567)
|||+++.++|+|.+|+|++.+++.+|+++++++++ +. ++|+++++++|++|+.|+.+.+ .+ ||+|
T Consensus 1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~-------~~----~~i~~~~~~~l~~~~~P~~~~~v~~~~~lP~t 69 (73)
T PF13193_consen 1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVL-------DE----EEIRDHLRDKLPPYMVPRRIRFVRLDEELPRT 69 (73)
T ss_dssp HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEE-------HH----HHHHHHHHHHS-GGGS-SEEEEEEESSSEEBE
T ss_pred CHHHHHhcCCCccEEEEEEEEcccccccceeEEEe-------ee----cccccchhhhCCCcceeeEEEEccccCcCCCC
Confidence 79999999999999999999999999999999997 22 7899999999999999954443 36 9999
Q ss_pred CCcc
Q 008389 543 ATGK 546 (567)
Q Consensus 543 ~~GK 546 (567)
++||
T Consensus 70 ~~GK 73 (73)
T PF13193_consen 70 PSGK 73 (73)
T ss_dssp TTSS
T ss_pred CCCC
Confidence 9998
|
... |
| >PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria | Back alignment and domain information |
|---|
Probab=98.93 E-value=7e-08 Score=94.12 Aligned_cols=226 Identities=20% Similarity=0.240 Sum_probs=131.5
Q ss_pred cCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHH---h-ccCCC-cEEEEecCccc-hhhhH---HHHHHhhhcCee
Q 008389 194 EWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALI---W-GMNEG-AVYLWTLPMFH-CNGWC---YTWSLAALCGTS 264 (567)
Q Consensus 194 ~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~---~-~~~~~-d~~~~~~p~~~-~~g~~---~~~~~~~~g~~~ 264 (567)
.+++...+.||||||.|--+.+.+..+..+....... + +.... -.++...|-.. ...+. .........++.
T Consensus 88 ~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~~~ 167 (365)
T PF04443_consen 88 EEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFGSR 167 (365)
T ss_pred hhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccCce
Confidence 3456678899999999876777776655554333332 2 22211 22333334321 11111 111111223333
Q ss_pred EEec--cCCHHHHHHHHH----hhCceEeeeCcHHHHHHHcCCCCCCcC-CCC-chhhhhccC------CCCCH-HHHHH
Q 008389 265 ICLR--QVTAKAVYSAIA----KYGVTHFCAAPVVLNSIVNAPSEDTIL-PLP-HVVHVNTAG------AAPPP-SVLHA 329 (567)
Q Consensus 265 ~~~~--~~~~~~~~~~i~----~~~~t~l~~~p~~~~~l~~~~~~~~~~-~l~-~lr~i~~~G------~~l~~-~~~~~ 329 (567)
..+. .++...++..+. +.++..+++.|.++..++....+.... .++ ..+.+-+|| +.+++ +..+.
T Consensus 168 ~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~~L~~~s~vi~~GGwK~~~~e~v~r~ef~~~ 247 (365)
T PF04443_consen 168 FALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRFRLPKGSIVIHGGGWKGRRKEAVSREEFYAR 247 (365)
T ss_pred eeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCcccCCCCCEEEeCCCCCccccCccCHHHHHHH
Confidence 3343 356666666664 457888999998777766543332221 032 334444554 44654 44555
Q ss_pred HHh-cCC----eeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEE
Q 008389 330 MSQ-KGF----HVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGE 404 (567)
Q Consensus 330 ~~~-~~~----~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Ge 404 (567)
+.+ +|+ .+++.||+||.......|..... +.|. .+.|.|++|..+++.| +.|-
T Consensus 248 l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~~~~~~------------------~~p~--wV~iRDp~tl~~~~~G--e~Gl 305 (365)
T PF04443_consen 248 LQEVFGVIPIENIYDMYGMTELNSQAYECGHGHF------------------HVPP--WVIIRDPETLEPLPPG--ETGL 305 (365)
T ss_pred HHHHHCCCCHHHeeeeeeccccchhheeCCCCcc------------------cCCC--eEEEECCCCCcCCCCC--CeeE
Confidence 555 577 69999999998766555432111 1222 3778899999999998 8899
Q ss_pred EEEecccccccccCCCccchhcccCCccccCceEEEeCC--------CcEEEeccccc
Q 008389 405 IVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPD--------NYIEIKDRSKD 454 (567)
Q Consensus 405 i~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~--------g~l~~~GR~~d 454 (567)
|.+-++.... | -+...|.|+|.++.+ .++.++||.+.
T Consensus 306 i~vidl~~~s-~------------p~~IlTeDlGvl~~~~~c~cr~g~~f~vlGR~~~ 350 (365)
T PF04443_consen 306 IQVIDLANTS-Y------------PGFILTEDLGVLHGDDDCGCRKGKYFEVLGRADG 350 (365)
T ss_pred EEEEcccccC-C------------CcEEEEcceeeecCCCCCCCccCCEEEEEeCCCC
Confidence 9886653221 1 123669999988754 27999999774
|
LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence |
| >PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.9e-08 Score=100.87 Aligned_cols=88 Identities=20% Similarity=0.237 Sum_probs=58.5
Q ss_pred ceEEEEEecccccccccCCCccchhcccCCccccCceEEEeC--CC--cEEEeccccceeeeCceecchHHHHHHHhcC-
Q 008389 401 TIGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHP--DN--YIEIKDRSKDIIISGGENISSVEVENMMYLH- 475 (567)
Q Consensus 401 ~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~--~g--~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~- 475 (567)
+.=||+++.. .|.|+ |+.||++++.. ++ .+.|+||.+.++++.|++++-.+|+.++.+.
T Consensus 356 ~~YelviTt~---~GLyR-------------Y~iGDvVrv~gf~~~~P~i~F~~R~~~~l~l~gEkl~e~~v~~av~~~~ 419 (528)
T PF03321_consen 356 EEYELVITTN---SGLYR-------------YRIGDVVRVTGFYNQTPRIEFVGRRGQVLSLFGEKLSEEQVQEAVARAL 419 (528)
T ss_dssp -EEEEEEEST---TS-SS-------------EEECEEEEEEEEETTEEEEEEEEETTEEE-SSS--EEHHHHHHHHHHHH
T ss_pred CeEEEEEecc---cceee-------------eecCCEEEEeeccCCCcEEEEeccCCceeecceeecCHHHHHHHHHHHH
Confidence 4567888653 45554 99999999864 34 7999999999999999999999999998764
Q ss_pred ----CCceeeEEEEeecCCCCCcceEEEEEcCC
Q 008389 476 ----PAVLEASVVARADERWGESPCAFVTLKPE 504 (567)
Q Consensus 476 ----~~i~~~~v~~~~~~~~g~~~~~~v~~~~~ 504 (567)
-.+.+..+.+.........-+.++++...
T Consensus 420 ~~~~~~~~~f~~~~~~~~~~~~~Y~~~~e~~~~ 452 (528)
T PF03321_consen 420 QETGLELRDFTVAPDPSSGNPPHYVLFWELEGE 452 (528)
T ss_dssp HCTT-EEEEEEEEEE--SSSSBEEEEEEEECS-
T ss_pred HhcCCceeeEEEEeecccCCCCceEEEEEeCCC
Confidence 33667777666322223345566666555
|
The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A. |
| >PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B | Back alignment and domain information |
|---|
Probab=97.92 E-value=2.6e-05 Score=60.54 Aligned_cols=85 Identities=24% Similarity=0.398 Sum_probs=57.3
Q ss_pred ceecchHHHHHHHhcCCCce-eeEEEEeecCCCCCcceEEEEEcCCccc--hhhHHHHHHHHHHHHhcCCCCCCCceeec
Q 008389 460 GENISSVEVENMMYLHPAVL-EASVVARADERWGESPCAFVTLKPEVDK--SNEQQLAEDIMKFCRAKMPAYWVPKSIVF 536 (567)
Q Consensus 460 G~~v~~~~iE~~l~~~~~i~-~~~v~~~~~~~~g~~~~~~v~~~~~~~~--~~~~~~~~~l~~~l~~~l~~~~~p~~i~~ 536 (567)
|.+++|.+||+++.++|++. +.+++.... ...+.+.+.|+..++... .+.+++.++|.+.+++.+.= .| .+.+
T Consensus 1 GvnvfP~~Ie~vl~~~~~~~~~y~i~v~~~-~~~D~l~v~vE~~~~~~~~~~~~~~l~~~i~~~lk~~lgv--~~-~V~l 76 (96)
T PF14535_consen 1 GVNVFPSQIEEVLREFPEVSPEYQIVVTRE-GGLDELTVRVELRPGFSDDAEDLEALAERIAERLKERLGV--RP-EVEL 76 (96)
T ss_dssp TEEE-HHHHHHHHCTSTTEEEEEEEEEEEE-TTEEEEEEEEEESTTCCTTHHHHHHHHHHHHHHHHHHHSS---E-EEEE
T ss_pred CcEECHHHHHHHHHhCcCCCCcEEEEEEcC-CCCcEEEEEEEECCccCcchHHHHHHHHHHHHHHHhhcCc--eE-EEEE
Confidence 78999999999999999999 555554433 346789999999887532 34567778888888888752 22 4444
Q ss_pred Cc---ccCCCCccccH
Q 008389 537 GP---LPKTATGKIQK 549 (567)
Q Consensus 537 ~~---lP~t~~GKi~r 549 (567)
++ |||+ .||..|
T Consensus 77 v~~gtLpr~-~~K~~R 91 (96)
T PF14535_consen 77 VPPGTLPRS-EGKAKR 91 (96)
T ss_dssp E-TT-S----SSSS-S
T ss_pred ECCCCccCC-CCcceE
Confidence 33 9997 578765
|
|
| >PLN02249 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00028 Score=73.47 Aligned_cols=43 Identities=9% Similarity=0.162 Sum_probs=38.7
Q ss_pred cccCceEEEeC----CCcEEEeccccceeeeCceecchHHHHHHHhc
Q 008389 432 YHTGDLGVKHP----DNYIEIKDRSKDIIISGGENISSVEVENMMYL 474 (567)
Q Consensus 432 ~~TGDl~~~~~----~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~ 474 (567)
|+.||+.++.. --.|.|+||.+.++++.|++++-.+++.++.+
T Consensus 410 Y~iGDvVrvtgf~~~~P~i~F~gR~~~~ls~~GEKl~e~~v~~Av~~ 456 (597)
T PLN02249 410 YRVGDILRVTGFHNSAPQFKFIRRKNVLLSIESDKTDEADLQKAVEN 456 (597)
T ss_pred eecCCEEEEeeccCCCcEEEEEccCCcceecccccCCHHHHHHHHHH
Confidence 99999999864 24799999999999999999999999998876
|
|
| >PLN02247 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.003 Score=65.40 Aligned_cols=44 Identities=9% Similarity=0.157 Sum_probs=38.4
Q ss_pred cccCceEEEe----CCCcEEEeccccceeeeCceecchHHHHHHHhcC
Q 008389 432 YHTGDLGVKH----PDNYIEIKDRSKDIIISGGENISSVEVENMMYLH 475 (567)
Q Consensus 432 ~~TGDl~~~~----~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~ 475 (567)
||.||+.++. ....|.|++|.+.+..+.|+|.+-.++..++.+.
T Consensus 417 YrlGDvv~V~GF~n~~P~~~Fv~R~~~vlsi~gEK~tE~~l~~Av~~a 464 (606)
T PLN02247 417 YRVGDILMVTGFYNNAPQFRFVQRRNVVLSIDTDKTNEEDLLKAVTQA 464 (606)
T ss_pred EecCCEEEEeeecCCCceEEEEecCCceeecccccCCHHHHHHHHHHH
Confidence 9999999875 3468999999999999999999999998888653
|
|
| >PLN02620 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0071 Score=62.64 Aligned_cols=44 Identities=16% Similarity=0.179 Sum_probs=38.1
Q ss_pred cccCceEEEeC----CCcEEEeccccceeeeCceecchHHHHHHHhcC
Q 008389 432 YHTGDLGVKHP----DNYIEIKDRSKDIIISGGENISSVEVENMMYLH 475 (567)
Q Consensus 432 ~~TGDl~~~~~----~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~ 475 (567)
||.||+.++.. ...|.|++|.+-+..+.|+|.+-.++..++.+.
T Consensus 423 YrlGDvv~V~Gf~n~~P~~~Fv~R~~~~lsi~gEK~tE~~l~~Av~~a 470 (612)
T PLN02620 423 YRVGDVLRVAGFKNKAPQFSFICRKNVVLSIDSDKTDEVELQNAVKNA 470 (612)
T ss_pred EecCCEEEEeeecCCCceEEEEeecCceeecccccCCHHHHHHHHHHH
Confidence 99999998753 467999999999999999999999998887653
|
|
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.067 Score=53.08 Aligned_cols=94 Identities=18% Similarity=0.091 Sum_probs=77.6
Q ss_pred ccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHH--HHHHHHhhhhcCCeeeeccccCChHHHHHHHhccCceEE
Q 008389 44 TRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPA--IYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVI 121 (567)
Q Consensus 44 ~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~--~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~v 121 (567)
-.+|+.|....+..+|+.|...|..+||+|.....-+.. -+-..+|+.++|+.++|+.+. ..+.-..++++.++.+|
T Consensus 108 ~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g-~~~~~~~l~~df~~tvI 186 (438)
T COG1541 108 FGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGG-NTERQLELMKDFKPTVI 186 (438)
T ss_pred eecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCc-cHHHHHHHHHhcCCcEE
Confidence 459999999999999999999999999999987762211 167789999999999999883 45666789999999999
Q ss_pred EEcccchHHHHHHHHHH
Q 008389 122 MVDQEYFKLAEEALKIM 138 (567)
Q Consensus 122 i~~~~~~~~~~~~~~~~ 138 (567)
.+.+.+.-.+.+.....
T Consensus 187 ~~tps~~l~lae~~~~~ 203 (438)
T COG1541 187 AATPSYLLYLAEEAEEE 203 (438)
T ss_pred EEChHHHHHHHHHHHHc
Confidence 99998877766655543
|
|
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=87.64 E-value=4.2 Score=41.80 Aligned_cols=83 Identities=10% Similarity=0.011 Sum_probs=63.5
Q ss_pred ccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHH--HHHHHHhhhhcCCeeeeccccCChHHHHHHHhccCceEE
Q 008389 44 TRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPA--IYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVI 121 (567)
Q Consensus 44 ~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~--~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~v 121 (567)
.-+|..++...+...+..+...|+.+||++.+..+-+.. .....+++..+|+.++|... ......+++..++.++
T Consensus 104 v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~---~~~~~~~i~~~~~t~l 180 (445)
T TIGR03335 104 FFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK---CTFPIRIIESYRPTGI 180 (445)
T ss_pred eeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc---hhHHHHHHHHhCCCEE
Confidence 458999999988888988888899999999998765542 23456788999998776543 2345678899999999
Q ss_pred EEcccchH
Q 008389 122 MVDQEYFK 129 (567)
Q Consensus 122 i~~~~~~~ 129 (567)
++.....-
T Consensus 181 ~~~ps~ll 188 (445)
T TIGR03335 181 VASVFKLL 188 (445)
T ss_pred EECHHHHH
Confidence 87665433
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=87.53 E-value=3.9 Score=41.63 Aligned_cols=89 Identities=16% Similarity=0.076 Sum_probs=68.1
Q ss_pred ccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChH--HHHHHHHhhhhcCCeeeeccccCChHHHHHHHhccCceEE
Q 008389 44 TRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIP--AIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVI 121 (567)
Q Consensus 44 ~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~--~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~v 121 (567)
-.+|..++......++..+...|+++||++....+.+. ......+++...|+.+++++.. ..+.+...++..++.++
T Consensus 93 v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~i~~~~~t~l 171 (422)
T TIGR02155 93 VGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGG-QTEKQVQLIQDFKPDII 171 (422)
T ss_pred eccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCC-CHHHHHHHHHHHCCCEE
Confidence 34788888777777888888889999999887665432 2233467788999999988765 45778899999999999
Q ss_pred EEcccchHHHHH
Q 008389 122 MVDQEYFKLAEE 133 (567)
Q Consensus 122 i~~~~~~~~~~~ 133 (567)
++.+.....+.+
T Consensus 172 ~~~Ps~l~~L~~ 183 (422)
T TIGR02155 172 MVTPSYMLNLLE 183 (422)
T ss_pred EEcHHHHHHHHH
Confidence 998887665543
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >TIGR03089 conserved hypothetical protein TIGR03089 | Back alignment and domain information |
|---|
Probab=80.28 E-value=9.9 Score=34.86 Aligned_cols=77 Identities=13% Similarity=0.101 Sum_probs=56.1
Q ss_pred CCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCCh--HHHHHHHHhhhhcCCeeeeccccCChHHHH
Q 008389 33 HPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNI--PAIYEAHFGVPMAGAVLNAVNIRLNAPTIA 110 (567)
Q Consensus 33 ~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~--~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~ 110 (567)
.++.+|++....-.|.+.+.... ...|+.++|++. .+|-. ..+...+++++..|+..+.+ +.++++++-
T Consensus 148 ~~~D~a~l~yTsg~~~~~~~~~~-------~~~~l~~~D~~l-~~Pl~H~~gl~~~~~~~l~~G~t~v~~-~rFd~~~~l 218 (227)
T TIGR03089 148 DATAPALVAGGGEWTGAELVAAA-------RAAGLPPGDRVL-VLAWTDLEDFLATLLAPLAAGGSLVLV-THPDPARLD 218 (227)
T ss_pred CCCcceeeeccccccHHHHHHHH-------hhcCCCCCCeEE-ecCCCchHHHHHHHHHHhccCceEEEe-cCCCHHHHH
Confidence 34666776655444555444332 556889999999 88754 34556789999999998887 699999999
Q ss_pred HHHhccCc
Q 008389 111 FLLGHSAS 118 (567)
Q Consensus 111 ~~l~~~~~ 118 (567)
..+++.++
T Consensus 219 ~~i~~~~v 226 (227)
T TIGR03089 219 QIAETERV 226 (227)
T ss_pred HHHHhhcC
Confidence 98888765
|
This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 567 | ||||
| 1ult_A | 541 | Crystal Structure Of Tt0168 From Thermus Thermophil | 6e-64 | ||
| 3r44_A | 517 | Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas | 1e-49 | ||
| 3ivr_A | 509 | Crystal Structure Of Putative Long-Chain-Fatty-Acid | 3e-44 | ||
| 3cw8_X | 504 | 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb | 3e-32 | ||
| 2qvx_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO | 3e-32 | ||
| 2qvz_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO | 3e-32 | ||
| 1t5d_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl | 3e-32 | ||
| 3dlp_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, | 4e-32 | ||
| 1t5h_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE | 2e-31 | ||
| 3a9u_A | 536 | Crystal Structures And Enzymatic Mechanisms Of A Po | 4e-31 | ||
| 2wd9_A | 569 | Crystal Structure Of Human Acyl-coa Synthetase Medi | 5e-28 | ||
| 3b7w_A | 570 | Crystal Structure Of Human Acyl-Coa Synthetase Medi | 6e-28 | ||
| 3t5b_A | 396 | Crystal Structure Of N-Terminal Domain Of Facl13 Fr | 7e-28 | ||
| 3tsy_A | 979 | 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr | 3e-27 | ||
| 3g7s_A | 549 | Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li | 3e-27 | ||
| 3ipl_A | 501 | Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig | 4e-26 | ||
| 3o82_A | 544 | Structure Of Base N-Terminal Domain From Acinetobac | 8e-25 | ||
| 4gxq_A | 506 | Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer | 2e-24 | ||
| 3rg2_A | 617 | Structure Of A Two-Domain Nrps Fusion Protein Conta | 4e-24 | ||
| 2d1t_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 9e-24 | ||
| 4fuq_A | 503 | Crystal Structure Of Apo Matb From Rhodopseudomonas | 1e-23 | ||
| 1mdb_A | 539 | Crystal Structure Of Dhbe In Complex With Dhb-adeny | 1e-23 | ||
| 2d1q_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 1e-23 | ||
| 2d1s_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 2e-23 | ||
| 1md9_A | 539 | Crystal Structure Of Dhbe In Complex With Dhb And A | 2e-22 | ||
| 1ba3_A | 550 | Firefly Luciferase In Complex With Bromoform Length | 3e-22 | ||
| 4gxr_A | 503 | Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len | 3e-22 | ||
| 3iep_A | 551 | Firefly Luciferase Apo Structure (P41 Form) Length | 3e-22 | ||
| 3nyq_A | 505 | Malonyl-Coa Ligase Ternary Product Complex With Met | 3e-22 | ||
| 4g36_A | 555 | Photinus Pyralis Luciferase In The Adenylate-Formin | 3e-22 | ||
| 2v7b_A | 529 | Crystal Structures Of A Benzoate Coa Ligase From Bu | 7e-22 | ||
| 4g37_A | 555 | Structure Of Cross-Linked Firefly Luciferase In Sec | 4e-21 | ||
| 3etc_A | 580 | 2.1 A Structure Of Acyl-Adenylate Synthetase From M | 3e-20 | ||
| 4fut_A | 503 | Crystal Structure Of Atp Bound Matb From Rhodopseud | 2e-19 | ||
| 3qya_A | 582 | Crystal Structure Of A Red-Emitter Mutant Of Lampyr | 2e-19 | ||
| 2vsq_A | 1304 | Structure Of Surfactin A Synthetase C (Srfa-C), A N | 4e-19 | ||
| 4gr5_A | 570 | Crystal Structure Of Slgn1deltaasub In Complex With | 8e-15 | ||
| 1ry2_A | 663 | Crystal Structure Of Yeast Acetyl-Coenzyme A Synthe | 3e-13 | ||
| 2p2b_A | 652 | Acetyl-coa Synthetase, V386a Mutation Length = 652 | 3e-13 | ||
| 1amu_A | 563 | Phenylalanine Activating Domain Of Gramicidin Synth | 4e-13 | ||
| 1pg3_A | 652 | Acetyl Coa Synthetase, Acetylated On Lys609 Length | 8e-13 | ||
| 2p2f_A | 652 | Acetyl-coa Synthetase, Wild-type With Acetate, Amp, | 1e-12 | ||
| 2p2m_A | 652 | Acetyl-Coa Synthetase, R194a Mutation Length = 652 | 2e-12 | ||
| 2p2j_A | 652 | Acetyl-Coa Synthetase, K609a Mutation Length = 652 | 5e-12 | ||
| 2p2q_A | 652 | Acetyl-Coa Synthetase, R584e Mutation Length = 652 | 5e-12 | ||
| 2p20_A | 652 | Acetyl-Coa Synthetase, R584a Mutation Length = 652 | 8e-12 | ||
| 3e7w_A | 511 | Crystal Structure Of Dlta: Implications For The Rea | 2e-11 | ||
| 3l8c_A | 521 | Structure Of Probable D-Alanine--Poly(Phosphoribito | 2e-11 | ||
| 3pbk_A | 583 | Structural And Functional Studies Of Fatty Acyl-Ade | 1e-09 | ||
| 3ite_A | 562 | The Third Adenylation Domain Of The Fungal Sidn Non | 1e-07 | ||
| 3vnq_A | 544 | Co-crystal Structure Of Nrps Adenylation Protein Cy | 8e-06 | ||
| 3kxw_A | 590 | The Crystal Structure Of Fatty Acid Amp Ligase From | 9e-06 | ||
| 4gr4_A | 469 | Crystal Structure Of Slgn1deltaasub Length = 469 | 7e-04 |
| >pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541 | Back alignment and structure |
|
| >pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517 | Back alignment and structure |
|
| >pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509 | Back alignment and structure |
|
| >pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504 | Back alignment and structure |
|
| >pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504 | Back alignment and structure |
|
| >pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504 | Back alignment and structure |
|
| >pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536 | Back alignment and structure |
|
| >pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase Medium-chain Family Member 2a (l64p Mutation) In Complex With Ibuprofen Length = 569 | Back alignment and structure |
|
| >pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase Medium-Chain Family Member 2a, With L64p Mutation Length = 570 | Back alignment and structure |
|
| >pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396 | Back alignment and structure |
|
| >pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979 | Back alignment and structure |
|
| >pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549 | Back alignment and structure |
|
| >pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501 | Back alignment and structure |
|
| >pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544 | Back alignment and structure |
|
| >pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506 | Back alignment and structure |
|
| >pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617 | Back alignment and structure |
|
| >pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548 | Back alignment and structure |
|
| >pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539 | Back alignment and structure |
|
| >pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548 | Back alignment and structure |
|
| >pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548 | Back alignment and structure |
|
| >pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539 | Back alignment and structure |
|
| >pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550 | Back alignment and structure |
|
| >pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503 | Back alignment and structure |
|
| >pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551 | Back alignment and structure |
|
| >pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505 | Back alignment and structure |
|
| >pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555 | Back alignment and structure |
|
| >pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529 | Back alignment and structure |
|
| >pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555 | Back alignment and structure |
|
| >pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580 | Back alignment and structure |
|
| >pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582 | Back alignment and structure |
|
| >pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304 | Back alignment and structure |
|
| >pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp Length = 570 | Back alignment and structure |
|
| >pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In Complex With Amp Length = 663 | Back alignment and structure |
|
| >pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563 | Back alignment and structure |
|
| >pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652 | Back alignment and structure |
|
| >pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652 | Back alignment and structure |
|
| >pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps) Adenylation Domains Length = 511 | Back alignment and structure |
|
| >pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol) Ligase Subunit-1 From Streptococcus Pyogenes Length = 521 | Back alignment and structure |
|
| >pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583 | Back alignment and structure |
|
| >pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non- Ribosomal Peptide Synthetase Length = 562 | Back alignment and structure |
|
| >pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1 With Atp From Streptomyces Length = 544 | Back alignment and structure |
|
| >pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From Legionella Pneumophila Length = 590 | Back alignment and structure |
|
| >pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub Length = 469 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 567 | |||
| 1v25_A | 541 | Long-chain-fatty-acid-COA synthetase; ligase, stru | 0.0 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 1e-161 | |
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 1e-157 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 1e-150 | |
| 1t5h_X | 504 | 4-chlorobenzoyl COA ligase; adenylate-forming coen | 1e-136 | |
| 3rg2_A | 617 | Enterobactin synthase component E (ENTE), 2,3-DIH | 1e-120 | |
| 4fuq_A | 503 | Malonyl COA synthetase; ANL superfamily, methylma | 1e-120 | |
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 1e-118 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 1e-117 | |
| 2v7b_A | 529 | Benzoate-coenzyme A ligase; benzoate oxidation, be | 1e-115 | |
| 3nyq_A | 505 | Malonyl-COA ligase; A/B topology ababa sandwich be | 1e-109 | |
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 1e-108 | |
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 1e-107 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 1e-106 | |
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 1e-105 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 3e-88 | |
| 3c5e_A | 570 | Acyl-coenzyme A synthetase ACSM2A, mitochondrial; | 1e-79 | |
| 3etc_A | 580 | AMP-binding protein; adenylate-forming acyl-COA sy | 7e-70 | |
| 3gqw_A | 576 | Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen | 7e-47 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 4e-43 | |
| 3t5a_A | 480 | Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C | 2e-27 | |
| 3l8c_A | 521 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 4e-25 | |
| 3ite_A | 562 | SIDN siderophore synthetase; ligase, non-ribosomal | 6e-24 | |
| 3e7w_A | 511 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 2e-22 | |
| 2vsq_A | 1304 | Surfactin synthetase subunit 3; ligase, peptidyl c | 8e-22 | |
| 3fce_A | 512 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 1e-21 | |
| 1amu_A | 563 | GRSA, gramicidin synthetase 1; peptide synthetase, | 1e-21 | |
| 1pg4_A | 652 | Acetyl-COA synthetase; AMP-forming, adenylate-form | 2e-19 | |
| 1ry2_A | 663 | Acetyl-coenzyme A synthetase 1, acyl-activating en | 2e-19 | |
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 1e-17 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 1e-14 |
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541 | Back alignment and structure |
|---|
Score = 738 bits (1909), Expect = 0.0
Identities = 169/566 (29%), Positives = 257/566 (45%), Gaps = 38/566 (6%)
Query: 3 MAKGIDDLPKNAANYMALTPLWFLDRAATVHPTRTSVVHGST----RYTWLQTYQRCRRL 58
M + + L FL+RAA + + V T R T+ + YQR RRL
Sbjct: 1 MEGERMNAFPSTMMDEELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRL 60
Query: 59 ASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSAS 118
L +G+G VA + N EA+F VP GAVL+ N RL+ IA++L H+
Sbjct: 61 MGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAED 120
Query: 119 AVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKF 178
V++ D L E ++ +V+ +++ + G + YE+
Sbjct: 121 KVLLFDPNLLPLVEAIRGELK-------TVQHFVVMDEKAPE----------GYLAYEEA 163
Query: 179 LQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALI--WGMNEG 236
L E + + YT+GTT PKGVV SHR L SL+ +L+ ++E
Sbjct: 164 LGEEADPVRV----PERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEK 219
Query: 237 AVYLWTLPMFHCNGWCYTWSLAALCGTSICL-RQVTAKAVYSAIAKYGVTHFCAAPVVLN 295
V L +PMFH N WC ++ + + ++ ++ GVT P V
Sbjct: 220 DVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWL 279
Query: 296 SIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAW 355
++ + E T L + + G+A P S++ + G V YGL+ET
Sbjct: 280 ALADYL-ESTGHRLKTLRRLVVGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFV 338
Query: 356 KPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKG 415
K +SL E + +KA+ G+ + L V D + PVP DGK +GE+ + G + G
Sbjct: 339 KSHLESLSEEEKLTLKAKTGLPIPLVR-LRVADEEGR-PVPKDGKALGEVQLKGPWITGG 396
Query: 416 YLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYL 474
Y N +A +G++ TGD+ V + Y+EIKDR KD+I SGGE ISSV++EN +
Sbjct: 397 YYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMG 456
Query: 475 HPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSI 534
HP V EA+VVA +W E P A V + E E +A + +P +
Sbjct: 457 HPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTP-----EELNEHLLKAGFAKWQLPDAY 511
Query: 535 VFGP-LPKTATGKIQKHVLRAKAKEM 559
VF +P+T+ GK K LR + K
Sbjct: 512 VFAEEIPRTSAGKFLKRALREQYKNY 537
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501 | Back alignment and structure |
|---|
Score = 469 bits (1209), Expect = e-161
Identities = 101/535 (18%), Positives = 193/535 (36%), Gaps = 44/535 (8%)
Query: 25 FLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIY 84
+L + A + ++ G YT+ Y LA L V + N
Sbjct: 6 WLYKQAQQNGHHIAITDGQESYTYQNLYCEASLLAKRL---KAYQQSRVGLYIDNSIQSI 62
Query: 85 EAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNG 144
+A + +N RL + + +I + + + + + G
Sbjct: 63 ILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAG 122
Query: 145 RFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTS 204
R ++ E + P + ++ +TS
Sbjct: 123 RDITTNGLLDNTMGIQ----------YDTSNETVVPKESPSNILNTSFNLDDIASIMFTS 172
Query: 205 GTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAALCGTS 264
GTT K V + R Y ++ G + +L LP++H +G T
Sbjct: 173 GTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTV 232
Query: 265 ICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPP 324
+ + A+ + + I +TH P LN ++ + ++ + GA
Sbjct: 233 RIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEP----YNLQKILLGGAKLSA 288
Query: 325 SVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKL 384
+++ Q + +++G++ET PE G+ ++ +
Sbjct: 289 TMIETALQYNLPIYNSFGMTETCSQFLT---------ATPEMLHARPDTVGMPSANVD-V 338
Query: 385 DVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDN 444
+ + + + GE+++ G VM GYL TF NG+++TGD+ +
Sbjct: 339 KIKN--------PNKEGHGELMIKGANVMNGYLYPTDL-TGTFENGYFNTGDIAEIDHEG 389
Query: 445 YIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPE 504
Y+ I DR KD+IISGGENI ++E + P + +A V D+ WG+ P + + +
Sbjct: 390 YVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESD 449
Query: 505 VDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLRAKAKE 558
+ ++ + + Y VPK LP T+TGK+Q++ L +
Sbjct: 450 IS-------KAQLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLYREGHH 497
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517 | Back alignment and structure |
|---|
Score = 458 bits (1180), Expect = e-157
Identities = 148/536 (27%), Positives = 225/536 (41%), Gaps = 49/536 (9%)
Query: 24 WFLDRAATVHPTRTSVVH--GSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIP 81
W L + ATV P + V R T+ Q R A L I G VA++ PN
Sbjct: 20 WMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSV 79
Query: 82 AIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEK 141
+G GAV +N RL AP ++F+L S S V++ + +
Sbjct: 80 EFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIR------ 133
Query: 142 SNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALG 201
+ PP + GA + L++ + ++ +
Sbjct: 134 --AQADPPGTVTDWI--------------GADSLAERLRSAAADEPAVECGGD-DNLFIM 176
Query: 202 YTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAALC 261
YTSGTT PKGVV +H + + S A + L LPMFH A
Sbjct: 177 YTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMRG 236
Query: 262 GTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAA 321
T I + Q A V+S I + V A P +LN + P + P + T GA
Sbjct: 237 VTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAEL-DAPDFRYFITGGAP 295
Query: 322 PPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGL 381
P +++ + K V Y L+E+ G T+ L E R G +
Sbjct: 296 MPEALIKIYAAKNIEVVQGYALTESCGGGTL---------LLSEDALRKAGSAGRATMFT 346
Query: 382 EKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKH 441
+ + V GE+V+ ++++K Y P+A + F NGW+ TGD+G
Sbjct: 347 D-VAVRG-DDGVIREHG---EGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEID 401
Query: 442 PDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTL 501
+ Y+ IKDR KD+IISGGEN+ E+E+++ P V E +V+ DE+WGE A V
Sbjct: 402 DEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVA 461
Query: 502 KP-EVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLRAK 555
EV + I+++C ++ Y +PK ++F +P+ TGKI K VLR +
Sbjct: 462 DQNEVS-------EQQIVEYCGTRLARYKLPKKVIFAEAIPRNPTGKILKTVLREQ 510
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509 | Back alignment and structure |
|---|
Score = 440 bits (1135), Expect = e-150
Identities = 141/547 (25%), Positives = 217/547 (39%), Gaps = 49/547 (8%)
Query: 20 LTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPN 79
T R A + P RT+ + R T R RLAS L + + G VAI++ N
Sbjct: 6 FTLADVYRRNAALFPDRTAFMVDGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQN 65
Query: 80 IPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIME 139
+ E V + GA+L VN RLNA IAF+LG A +V++ +Y + L +
Sbjct: 66 CSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLG 125
Query: 140 EKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIA 199
IGD S ++ D +
Sbjct: 126 G-------VKKAYAIGDGS-----------GPFAPFKDLASDTPFSAPEFGAADGFV--- 164
Query: 200 LGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAA 259
+ +T+ P+G ++S + S+ W + E V L LP+FH G +L
Sbjct: 165 IIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQ 224
Query: 260 LCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAG 319
G S+ + I + VT +L +I++ + L + V T
Sbjct: 225 AGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAAPA---QLASLRAV-TGL 280
Query: 320 AAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFI 379
P + T+G SET G ST P + + G
Sbjct: 281 DTPETIERFEATCPNATFWATFGQSETSGLSTF---------APYRDRPK---SAGRPLF 328
Query: 380 GLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGV 439
+ V+D +P+P +GEIV+ G V KGY N A + F NGW+HTGD+G
Sbjct: 329 WRT-VAVVDAED-RPLPPG--EVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGR 384
Query: 440 KHPDNYIEIKDRS--KDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCA 497
D Y+ R+ K++I +GGEN+ EVE + HPA+ +A V+ D +W E+ A
Sbjct: 385 FDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKA 444
Query: 498 FVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKA 556
KP + A+ + +F + + Y PK +VF LPK A G I + ++
Sbjct: 445 VCVCKPGESIA-----ADALAEFVASLIARYKKPKHVVFVEALPKDAKGAIDRAAVKTAH 499
Query: 557 KEMGPVR 563
+ G
Sbjct: 500 GQEGHHH 506
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504 | Back alignment and structure |
|---|
Score = 405 bits (1043), Expect = e-136
Identities = 131/545 (24%), Positives = 216/545 (39%), Gaps = 62/545 (11%)
Query: 25 FLDRAATVHPTRTSVV--HGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPA 82
L RAAT P ++ R T + R +A+ L + VA++APN
Sbjct: 7 MLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSAD 66
Query: 83 IYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKS 142
+ A + GAV +N RL + +A L+ ++ ++A+ +
Sbjct: 67 VVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVG-RQVADAIFQSGS--- 122
Query: 143 NGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGY 202
+I +GD D + Y + + P + Y
Sbjct: 123 -----GARIIFLGDLVRDGEPYSYGPPIEDPQ----REPAQP-------------AFIFY 160
Query: 203 TSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGA--VYLWTLPMFHCNGW-CYTWSLAA 259
TSGTT PK ++ R A L ++ G+ G V L +P++H G+ + A
Sbjct: 161 TSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALA 220
Query: 260 LCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSED-TILPLPHVVHVNTA 318
L GT + + + + + VT A P L+++ A + + L L + HV A
Sbjct: 221 LDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFA 280
Query: 319 GAAPPPSVLHAMSQK-GFHVTHTYGLSETYGPSTVCAWKPEWDSLP-PETQARMKARQGV 376
GA P +VL + Q + YG +E + K + P ++ R
Sbjct: 281 GATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVR------- 333
Query: 377 RFIGLEKLDVID--TRTQQPVPADGKTIGEIVMSG-NVVMKGYLKNPKANEETFANGWYH 433
++ + V GE++++ + GYL P+A E +GWY
Sbjct: 334 ---------IVRIGGGVDEIVANG--EEGELIVAASDSAFVGYLNQPQATAEKLQDGWYR 382
Query: 434 TGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGE 493
T D+ V P+ + I R D+IISGGENI E+E ++ P V E V+ AD+RWG+
Sbjct: 383 TSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQ 442
Query: 494 SPCAFVTLKPEVDKSNEQQLAEDIMKFCRA-KMPAYWVPKSIVFGP-LPKTATGKIQKHV 551
S A V + S A+ + FCR+ ++ + PK LPK A K+ +
Sbjct: 443 SVTACVVPRLGETLS-----ADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQ 497
Query: 552 LRAKA 556
L +
Sbjct: 498 LVQQV 502
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617 | Back alignment and structure |
|---|
Score = 366 bits (943), Expect = e-120
Identities = 118/545 (21%), Positives = 212/545 (38%), Gaps = 53/545 (9%)
Query: 25 FLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIY 84
L R A +V+ G + ++ + Q LA +L ++ I G T + N+ +Y
Sbjct: 32 ILTRHA--ASDSIAVIDGERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELY 89
Query: 85 EAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEY--FKLAEEALKIMEEKS 142
F + G + A+++ D+++ F + + E S
Sbjct: 90 ITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHS 149
Query: 143 NGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGY 202
+ R + ++ D G + + F P + +
Sbjct: 150 SIRV----VQLLNDS-------------GEHNLQDAINHPAEDFTATPSPAD-EVAYFQL 191
Query: 203 TSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAALC- 261
+ GTT +PK + +H Y I + YL +P H SL
Sbjct: 192 SGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLA 251
Query: 262 -GTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSED-TILPLPHVVHVNTAG 319
GT + +A + I K+ V P ++ + A E + L + + G
Sbjct: 252 GGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGG 311
Query: 320 AAPPPSVLHAMSQK-GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRF 378
A ++ + + G + +G++E V + ++ ++ QG
Sbjct: 312 ARLSATLAARIPAEIGCQLQQVFGMAEG----LVNY------TRLDDSAEKIIHTQG-YP 360
Query: 379 I--GLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETF-ANGWYHTG 435
+ E + V D P+P +G ++ G +GY K+P+ N F ANG+Y +G
Sbjct: 361 MCPDDE-VWVADA-EGNPLPQG--EVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSG 416
Query: 436 DLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESP 495
DL P+ YI ++ R KD I GGE I++ E+EN++ HPAV+ A++V+ DE GE
Sbjct: 417 DLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKS 476
Query: 496 CAFVTLKPEVDKSNEQQLAEDIMKFCRAK-MPAYWVPKSIVFGP-LPKTATGKIQKHVLR 553
CA++ +K + A + +F R + + + +P + LP TA GK+ K LR
Sbjct: 477 CAYLVVKEPLR-------AVQVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLR 529
Query: 554 AKAKE 558
Sbjct: 530 QWLAS 534
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503 | Back alignment and structure |
|---|
Score = 362 bits (932), Expect = e-120
Identities = 111/544 (20%), Positives = 196/544 (36%), Gaps = 64/544 (11%)
Query: 28 RAATVHPTRTSVV-HGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEA 86
P + ++ + ++ + R R+A+ L R + +G VA
Sbjct: 10 FDKLDDPHKLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVL 69
Query: 87 HFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRF 146
+ AG V +N + + + + +++ D +
Sbjct: 70 YLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKV-------- 121
Query: 147 KPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGT 206
+ +G + G F + A+ YTSGT
Sbjct: 122 -GATVETLGPD-------------GRGSLTDAAAGASEAFATIDRGAD-DLAAILYTSGT 166
Query: 207 TASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGW-CYTWSLAALCGTSI 265
T KG +LSH SL++ W V + LP++H +G + G+ I
Sbjct: 167 TGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMI 226
Query: 266 CLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPS 325
L + + +A+ T P ++ +P H+ + A
Sbjct: 227 FLPKFDPDKILDLMAR--ATVLMGVPTFYTRLLQSPRLTKET-TGHMRLFISGSAPLLAD 283
Query: 326 VLHAMSQK-GFHVTHTYGLSETYGPSTVCAWKPEWDSLP-------PETQARMKARQGVR 377
S K G V YG++ET + + + D +P P AR
Sbjct: 284 THREWSAKTGHAVLERYGMTET---NMNTSNPYDGDRVPGAVGPALPGVSAR-------- 332
Query: 378 FIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETF-ANGWYHTGD 436
V D T + +P IG I + G V KGY + P+ + F +G++ TGD
Sbjct: 333 --------VTDPETGKELPRG--DIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGD 382
Query: 437 LGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPC 496
LG Y+ I R KD++I+GG N+ E+E+ + P V+E++V+ +GE
Sbjct: 383 LGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVT 442
Query: 497 AFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAK 555
A V ++ ++ + +PK ++F LP+ GK+QK+VLR
Sbjct: 443 AVVVRDKGATID-----EAQVLHGLDGQLAKFKMPKKVIFVDDLPRNTMGKVQKNVLRET 497
Query: 556 AKEM 559
K++
Sbjct: 498 YKDI 501
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544 | Back alignment and structure |
|---|
Score = 358 bits (921), Expect = e-118
Identities = 108/541 (19%), Positives = 209/541 (38%), Gaps = 42/541 (7%)
Query: 25 FLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIY 84
L HP +++ G + ++++ + LA+ L ++ +G G T + PN+ Y
Sbjct: 35 ILTVGVQSHPHSLAIICGERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFY 94
Query: 85 EAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHS-ASAVIMVDQ-EYFKLAEEALKIMEEKS 142
F + AG V+ + + +I Q E F + + +
Sbjct: 95 IVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNL 154
Query: 143 NGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGY 202
P +++++ ++ +++T F +
Sbjct: 155 ----SPEIILMLNHQA------------TDFGLLDWIETPAETFVDFSSTPADEVAFFQL 198
Query: 203 TSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAALC- 261
+ G+T +PK + +H + A I G+N L LP H +L L
Sbjct: 199 SGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLHA 258
Query: 262 -GTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGA 320
G + +S I ++ V P + + ++ + + + GA
Sbjct: 259 GGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYK-DQIQSLKLLQVGGA 317
Query: 321 APPPSVLHAMSQK-GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFI 379
+ P S+ + + + +G++E V + ++ ++ QG
Sbjct: 318 SFPESLARQVPEVLNCKLQQVFGMAEG----LVNY------TRLDDSDEQIFTTQGRPIS 367
Query: 380 GLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETF-ANGWYHTGDLG 438
+++ ++D + + VP IG + G GY ++P+ N + F + +Y++GDL
Sbjct: 368 SDDEIKIVDEQYR-EVPEG--EIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLV 424
Query: 439 VKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAF 498
+ PD + + R KD I GGE I+S E+E ++ LHP V+ A++VA DE++GE CAF
Sbjct: 425 QRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAF 484
Query: 499 VTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAK 557
+ + E + + Y +P I LP TA GK+ K LR+
Sbjct: 485 IVSRNP-----ELKAVVLRRHLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILN 539
Query: 558 E 558
Sbjct: 540 T 540
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539 | Back alignment and structure |
|---|
Score = 356 bits (917), Expect = e-117
Identities = 123/547 (22%), Positives = 202/547 (36%), Gaps = 58/547 (10%)
Query: 25 FLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIY 84
L A + R ++ G+T +++ + R RLA+ K I V + PNI +
Sbjct: 30 LLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFF 89
Query: 85 EAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHS-ASAVIMVDQ----EYFKLAEEALKIME 139
E F + GA+ + I + + A+A I+ D +Y LA + +
Sbjct: 90 EVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKL- 148
Query: 140 EKSNGRFKPPL--LIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQS 197
P L +IV G+ + E P
Sbjct: 149 --------PTLKNIIVAGEAE------------EFLPLEDLHTEPVKL----PEVKSSDV 184
Query: 198 IALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSL 257
L + G+T K + +H + ++ VYL LPM H L
Sbjct: 185 AFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVL 244
Query: 258 AALC--GTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHV 315
L G + + + I + VT P + ++A S L + +
Sbjct: 245 GVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRR-DDLSSLQVL 303
Query: 316 NTAGAAPPPSVLHAMSQK-GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQ 374
GA + G + +G++E G P E Q
Sbjct: 304 QVGGAKFSAEAARRVKAVFGCTLQQVFGMAE--GLVNYTRLDD-----PEEIIV---NTQ 353
Query: 375 GVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETF-ANGWYH 433
G ++ V D + V G ++ G ++GY K + N +F +G+Y
Sbjct: 354 GKPMSPYDESRVWDDHDR-DVKPG--ETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYR 410
Query: 434 TGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGE 493
TGD+ D YI ++ R+KD I GGE +++ EVEN + HPAV +A++V+ D+ GE
Sbjct: 411 TGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGE 470
Query: 494 SPCAFVTLKPEVDKSNEQQLAEDIMKFCRAK-MPAYWVPKSIVFGP-LPKTATGKIQKHV 551
C F+ + E K A ++ F R + + AY +P + F P+T GK+ K
Sbjct: 471 RSCVFIIPRDEAPK------AAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKA 524
Query: 552 LRAKAKE 558
LR E
Sbjct: 525 LREAISE 531
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529 | Back alignment and structure |
|---|
Score = 352 bits (905), Expect = e-115
Identities = 119/545 (21%), Positives = 206/545 (37%), Gaps = 56/545 (10%)
Query: 24 WFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAI 83
+ T +T+ + + T+ + +R RR ASAL + + ++ + A+
Sbjct: 28 YLFRLNET-RAGKTAYIDDTGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVAL 86
Query: 84 YEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSN 143
A G AG V N L ++L HS + ++ L + + +E +
Sbjct: 87 PVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGA---LVQNVTQALESAEH 143
Query: 144 GRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIA-LGY 202
+++ + + R A +E+ + P IA Y
Sbjct: 144 ----DGCQLIVSQP-------RESEPRLAPLFEELIDAAAPAAK--AAATGCDDIAFWLY 190
Query: 203 TSGTTASPKGVVLSHRGAYLMSLSVALIW-GMNEGAVYLWTLPMFHCNGWCYTWSLAALC 261
+SG+T PKG V +H Y + A G+ E V +F G +
Sbjct: 191 SSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSV 250
Query: 262 GTSICLR--QVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAG 319
G + L + TA A+++ + ++ T F P + +++ +P+ + +AG
Sbjct: 251 GATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPA-RADVAIRICTSAG 309
Query: 320 AAPPPSVLHAMSQK-GFHVTHTYGLSETYGPSTVCAWKPEWDSLP-------PETQARMK 371
A P + + G + G +E + P +
Sbjct: 310 EALPREIGERFTAHFGCEILDGIGSTEM---LHIFLSNRAGAVEYGTTGRPVPGYEIE-- 364
Query: 372 ARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANGW 431
+ D VP +G++ + G Y N + + TF W
Sbjct: 365 --------------LRD-EAGHAVPDG--EVGDLYIKGPSAAVMYWNNREKSRATFLGEW 407
Query: 432 YHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERW 491
+GD + P+ RS D++ G+ +S VEVE ++ H AVLEA+VV
Sbjct: 408 IRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGVDHGGL 467
Query: 492 GESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKH 550
+ AFV LK E S LAE++ F + ++ + P+ IVF LPKTATGKIQ+
Sbjct: 468 VK-TRAFVVLKREFAPSEI--LAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRF 524
Query: 551 VLRAK 555
LR +
Sbjct: 525 KLREQ 529
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505 | Back alignment and structure |
|---|
Score = 335 bits (862), Expect = e-109
Identities = 116/555 (20%), Positives = 192/555 (34%), Gaps = 77/555 (13%)
Query: 11 PKNAANYMALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLG 70
++M+ R ++ G T+ + A +
Sbjct: 14 LVPRGSHMSSLFPALSPAPTGAPADRPALRFGERSLTYAELAAAAGATAGRIGG-----A 68
Query: 71 CTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKL 130
VA+ A A +AG +N + +A +L SA ++++
Sbjct: 69 GRVAVWATPAMETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPP----- 123
Query: 131 AEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKP 190
D + GA+E
Sbjct: 124 --------------------------------DAELPPALGALERVDVDVRARGAVPEDG 151
Query: 191 PQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNG 250
D + + YTSGTT PKG V+ R ++A W V + LP+FH +G
Sbjct: 152 ADDGDPA-LVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHG 210
Query: 251 WCYTWSLAALC--GTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILP 308
L L G+ L + + + + G T P + + I D L
Sbjct: 211 LV-LGILGPLRRGGSVRHLGRFSTEGAARELND-GATMLFGVPTMYHRIAETLPADPELA 268
Query: 309 --LPHVVHVNTAGAAPPPSVLHAMSQK-GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPE 365
L + + AA P ++ G V YG++ET +T S+ +
Sbjct: 269 KALAGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTET-LMNT---------SVRAD 318
Query: 366 TQARM----KARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPK 421
+ R GV L +++ DG+++GEI + G + YL P
Sbjct: 319 GEPRAGTVGVPLPGVE------LRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPD 372
Query: 422 ANEETF-ANGWYHTGDLGVKHPDNYIEIKDR-SKDIIISGGENISSVEVENMMYLHPAVL 479
A F +G++ TGD+ V+ PD Y+ I R + D+I SGG I + E+EN + HP V
Sbjct: 373 ATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVR 432
Query: 480 EASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP- 538
EA+V D GE A++ LA+ A++ + P+ + +
Sbjct: 433 EAAVTGEPDPDLGERIVAWIVPADPAAPPALGTLAD----HVAARLAPHKRPRVVRYLDA 488
Query: 539 LPKTATGKIQKHVLR 553
+P+ GKI K L
Sbjct: 489 VPRNDMGKIMKRALN 503
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549 | Back alignment and structure |
|---|
Score = 334 bits (859), Expect = e-108
Identities = 117/568 (20%), Positives = 226/568 (39%), Gaps = 74/568 (13%)
Query: 21 TPLW-FLDRAATVHPTRTSVVHGST--------RYTWLQTYQRCRRLASALCKRSIGLGC 71
L +D AA +T+++ +L+ + ++LAS + ++ + G
Sbjct: 19 ISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGE 78
Query: 72 TVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLA 131
V + PN + + A +N + + +L S + ++V ++
Sbjct: 79 HVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENF 138
Query: 132 EEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPP 191
+ L+ + + V+G E + + +G F+
Sbjct: 139 KPVLE--------KTGVERVFVVGGE--------------VNSLSEVMDSGSEDFE-NVK 175
Query: 192 QDEWQSIA-LGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNG 250
+ + +A + YT GTT PKGV+L+H +L +A+ G++ + +PMFH
Sbjct: 176 VNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAE 235
Query: 251 WCYTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTI-LPL 309
+ + + + + + + I KY T A P LN +VN
Sbjct: 236 FGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDW 295
Query: 310 PHVVHVNTAGAAPPPSVLHAMSQKGFHVTHT--------YGLSETYGPSTVCAWKPEWDS 361
++ T P+++ + + + +G++E T S
Sbjct: 296 SYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLDKS 355
Query: 362 ----LP-PETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGY 416
+P + + + VI + + GEIV+ G + KGY
Sbjct: 356 TTQGVPMSDIELK----------------VISLEDGRELGVG--ESGEIVIRGPNIFKGY 397
Query: 417 LKNPKANEETF-----ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENM 471
K K N+E + ++ TGD+G + ++ +DR K++I G I+ E+E +
Sbjct: 398 WKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEAL 457
Query: 472 MYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVP 531
+ H AV++ +V+ + DE GE P AF+ LKPE + EDI+++ R ++ Y
Sbjct: 458 LMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYRGKVD---EEDIIEWVRERISGYKRV 514
Query: 532 KSIVF-GPLPKTATGKIQKHVLRAKAKE 558
+ + F LP+TA+GK+ + +LR K E
Sbjct: 515 REVEFVEELPRTASGKLLRRLLREKEAE 542
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550 | Back alignment and structure |
|---|
Score = 330 bits (849), Expect = e-107
Identities = 110/571 (19%), Positives = 209/571 (36%), Gaps = 64/571 (11%)
Query: 21 TPLW-FLDRAATVH---PTRTSVVHGST--RYTWLQTYQRCRRLASALCKRSIGLGCTVA 74
L +A + P + T+ + ++ RLA A+ + + +
Sbjct: 20 GTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIV 79
Query: 75 IIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEA 134
+ + N + G G + N N + + S V+ V ++ +
Sbjct: 80 VCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNV 139
Query: 135 LKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDE 194
K + I+I D D + + L G ++D+ P +
Sbjct: 140 QK--------KLPIIQKIIIMDSKTDYQGFQSMY----TFVTSHLPPGFNEYDFVPESFD 187
Query: 195 WQS--IALGYTSGTTASPKGVVLSHRG---AYLMSLSVALIWGMNEGAVYLWTLPMFHCN 249
+ +SG+T PKGV L HR + + + L +P H
Sbjct: 188 RDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGF 247
Query: 250 GWCYTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPL 309
G T + + + + ++ Y + P + + + D L
Sbjct: 248 GMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDK-YDL 306
Query: 310 PHVVHVNTAGAAP-PPSVLHAMSQK--GFHVTHTYGLSETYGPSTVCAWKPEWDSLP--- 363
++ + + G AP V A++++ + YGL+ET ++ PE D P
Sbjct: 307 SNLHEIAS-GGAPLSKEVGEAVAKRFHLPGIRQGYGLTET---TSAILITPEGDDKPGAV 362
Query: 364 ----PETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKN 419
P +A+ V+D T + + + GE+ + G ++M GY+ N
Sbjct: 363 GKVVPFFEAK----------------VVDLDTGKTLGVN--QRGELCVRGPMIMSGYVNN 404
Query: 420 PKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAV 478
P+A +GW H+GD+ D + I DR K +I G ++ E+E+++ HP +
Sbjct: 405 PEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNI 464
Query: 479 LEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAY-WVPKSIVF- 536
+A V D+ GE P A V L+ + ++I+ + +++ + +VF
Sbjct: 465 FDAGVAGLPDDDAGELPAAVVVLEHGKTMT-----EKEIVDYVASQVTTAKKLRGGVVFV 519
Query: 537 GPLPKTATGKIQKHVLRAKAKEMGPVRKSKL 567
+PK TGK+ +R + KSKL
Sbjct: 520 DEVPKGLTGKLDARKIREILIKAKKGGKSKL 550
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548 | Back alignment and structure |
|---|
Score = 329 bits (845), Expect = e-106
Identities = 114/573 (19%), Positives = 210/573 (36%), Gaps = 75/573 (13%)
Query: 22 PLW-FLDRAATVHPTRTSV--VHGST--RYTWLQTYQRCRRLASALCKRSIGLGCTVAII 76
L + + ++ + T Y++ + ++ L AL + + +A+
Sbjct: 24 SAGTQLRKYMERYAKLGAIAFTNAVTGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALC 83
Query: 77 APNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALK 136
+ N + G + N + LG S ++ ++ K
Sbjct: 84 SENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQK 143
Query: 137 IMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQ------FDWKP 190
IVI D D + G + F++ P F
Sbjct: 144 --------TVTTIKTIVILDSKVDYR--------GYQCLDTFIKRNTPPGFQASSFKTVE 187
Query: 191 PQDEWQSIALGYTSGTTASPKGVVLSHRGAY---LMSLSVALIWGMNEGAVYLWTLPMFH 247
+ Q + +SG+T PKGV L+H + ++ G L +P H
Sbjct: 188 VDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHH 247
Query: 248 CNGWCYTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTIL 307
G T + L + + + Y T P + + + +
Sbjct: 248 GFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNK-Y 306
Query: 308 PLPHVVHVNTAGAAP-PPSVLHAMSQK--GFHVTHTYGLSETYGPSTVCAWKPEWDSLP- 363
L ++V + + G AP V A++++ V YGL+ET ++ PE D P
Sbjct: 307 DLSNLVEIAS-GGAPLSKEVGEAVARRFNLPGVRQGYGLTET---TSAIIITPEGDDKPG 362
Query: 364 ------PETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYL 417
P +A+ VID T++ + + GE+ + G ++MKGY+
Sbjct: 363 ASGKVVPLFKAK----------------VIDLDTKKSLGPN--RRGEVCVKGPMLMKGYV 404
Query: 418 KNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHP 476
NP+A +E GW HTGD+G + + I DR K +I G + E+E+++ HP
Sbjct: 405 NNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHP 464
Query: 477 AVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAY-WVPKSIV 535
++ +A V D GE P A V L+ + + +++M + +++ + +
Sbjct: 465 SIFDAGVAGVPDPVAGELPGAVVVLESGKNMT-----EKEVMDYVASQVSNAKRLRGGVR 519
Query: 536 F-GPLPKTATGKIQKHVLRAKAKEMGPVRKSKL 567
F +PK TGKI +R K+ +K+
Sbjct: 520 FVDEVPKGLTGKIDGRAIREILKK----PVAKM 548
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536 | Back alignment and structure |
|---|
Score = 326 bits (838), Expect = e-105
Identities = 124/559 (22%), Positives = 222/559 (39%), Gaps = 70/559 (12%)
Query: 22 PLW-FLDRAATVHPTRTSVVHGST--RYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAP 78
PL ++ + H ++ +++G+ YT+ RR+AS L K I G + + P
Sbjct: 23 PLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLP 82
Query: 79 NIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIM 138
+ P A G GA++ A N +A S + +++ Y++ ++ +
Sbjct: 83 SSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFAR-- 140
Query: 139 EEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSI 198
+ + ++ D + D G + + + Q + + +
Sbjct: 141 --------ESDVKVMCVDSAPD----------GCLHFSELTQADENEA--PQVDISPDDV 180
Query: 199 A-LGYTSGTTASPKGVVLSHRG----AYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCY 253
L Y+SGTT PKGV+L+H+G + V L LPMFH
Sbjct: 181 VALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNS 240
Query: 254 TWSLAALCG-TSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHV 312
G + + + ++ I KY V+ P V+ SI +P D L +
Sbjct: 241 IMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDK-HDLSSL 299
Query: 313 VHVNTAGAAP-PPSVLHAMSQK--GFHVTHTYGLSETYGPSTVCAWKPEWDS-------- 361
+ + G AP + + K + YG++E +C +
Sbjct: 300 RMIKS-GGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACG 358
Query: 362 -LPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNP 420
+ + + ++D T +P + GEI + G+ +MKGYL +P
Sbjct: 359 TVVRNAEMK----------------IVDPETGASLPRN--QPGEICIRGDQIMKGYLNDP 400
Query: 421 KANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVL 479
+A T GW HTGD+G D+ + I DR K++I G ++ E+E ++ HP +
Sbjct: 401 EATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEIS 460
Query: 480 EASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVF-GP 538
+A+VV DE GE P AFV + + ++I ++ ++ Y K + F
Sbjct: 461 DAAVVGLKDEDAGEVPVAFVVKSEKSQAT-----EDEIKQYISKQVIFYKRIKRVFFIEA 515
Query: 539 LPKTATGKIQKHVLRAKAK 557
+PK +GKI + L+ K
Sbjct: 516 IPKAPSGKILRKNLKEKLA 534
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979 | Back alignment and structure |
|---|
Score = 292 bits (749), Expect = 3e-88
Identities = 125/567 (22%), Positives = 218/567 (38%), Gaps = 68/567 (11%)
Query: 21 TPLW-FLDRAATVHPTRTSVVHGST--RYTWLQTYQRCRRLASALCKRSIGLGCTVAIIA 77
L ++ + + T+ +++G T YT+ + R++A+ K + V ++
Sbjct: 61 LSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLL 120
Query: 78 PNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHS-ASAVIMVDQEYFKLAEEALK 136
PN P + GA A N IA S +I + K+
Sbjct: 121 PNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQND 180
Query: 137 IMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQ 196
+++ I D P + G + + + Q+ + +
Sbjct: 181 D----------GVVIVCIDDNESVP------IPEGCLRFTELTQSTTEASEVIDSVEISP 224
Query: 197 S--IALGYTSGTTASPKGVVLSHRG----AYLMSLSVALIWGMNEGAVYLWTLPMFHCNG 250
+AL Y+SGTT PKGV+L+H+G + V L LPMFH
Sbjct: 225 DDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYA 284
Query: 251 WCYTWSLAALCG-TSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPL 309
G + + + + I + VT P ++ +I + + L
Sbjct: 285 LNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEK-YDL 343
Query: 310 PHVVHVNTAGAAP-PPSVLHAMSQK--GFHVTHTYGLSETYGPSTVCAWKPEWDS----- 361
+ V + GAAP + A++ K + YG++E GP + +
Sbjct: 344 SSIRVVKS-GAAPLGKELEDAVNAKFPNAKLGQGYGMTEA-GPVLAMSLGFAKEPFPVKS 401
Query: 362 -----LPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGY 416
+ + + ++D T + + GEI + G+ +MKGY
Sbjct: 402 GACGTVVRNAEMK----------------IVDPDTGDSLSRN--QPGEICIRGHQIMKGY 443
Query: 417 LKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLH 475
L NP A ET +GW HTGD+G+ D+ + I DR K++I G ++ E+E ++ H
Sbjct: 444 LNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGH 503
Query: 476 PAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIV 535
P + + +VVA +E GE P AFV + + S +D+ +F ++ Y +
Sbjct: 504 PDITDVAVVAMKEEAAGEVPVAFVVKSKDSELS-----EDDVKQFVSKQVVFYKRINKVF 558
Query: 536 F-GPLPKTATGKIQKHVLRAKAKEMGP 561
F +PK +GKI + LRAK
Sbjct: 559 FTESIPKAPSGKILRKDLRAKLANGLG 585
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570 | Back alignment and structure |
|---|
Score = 260 bits (666), Expect = 1e-79
Identities = 123/547 (22%), Positives = 216/547 (39%), Gaps = 70/547 (12%)
Query: 43 STRYTWLQTYQRCRRLASALCKRSIGLGC--TVAIIAPNIPAIYEAHFGVPMAGAVLNAV 100
+ + + + ++ A+ L + GL VA++ P +P + G AG +
Sbjct: 71 ELMWNFRELSENSQQAANVL-SGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPG 129
Query: 101 NIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCD 160
I++ + I + L S + I+ E + +E + E + R K +++ ++SCD
Sbjct: 130 TIQMKSTDILYRLQMSKAKAIVAGDE---VIQEVDTVASECPSLRIK----LLVSEKSCD 182
Query: 161 PKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIAL-GYTSGTTASPKGVVLSHRG 219
G + ++K L + Q + +TSGT+ PK S+
Sbjct: 183 ----------GWLNFKKLLNEASTTHH--CVETGSQEASAIYFTSGTSGLPKMAEHSYSS 230
Query: 220 AYLMSLSVALIWGMNEGAVYLWTL--PMFHCNGWCY-TWS--LAAL-CGTSICL---RQV 270
L + A G+ + WT+ GW + G + +
Sbjct: 231 LGLKAKMDAGWTGLQASDIM-WTISDT-----GWILNILCSLMEPWALGACTFVHLLPKF 284
Query: 271 TAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLH-A 329
+ ++ Y + AP+V ++ PH+ + T G + P L
Sbjct: 285 DPLVILKTLSSYPIKSMMGAPIVYRMLLQQDLSS--YKFPHLQNCVTVGESLLPETLENW 342
Query: 330 MSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGL----EKLD 385
+Q G + +YG +ET C MK + G ++G +
Sbjct: 343 RAQTGLDIRESYGQTETGL---TCM-----------VSKTMKIKPG--YMGTAASCYDVQ 386
Query: 386 VIDTRTQQPVPADGKTIGEIVMSGN-----VVMKGYLKNPKANEETFANGWYHTGDLGVK 440
+ID + +P T G+I + + GY+ NP ++ GD G+K
Sbjct: 387 IIDDKGN-VLPPG--TEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRGIK 443
Query: 441 HPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVT 500
D Y + R+ DII S G I EVEN + HPAV+E +V++ D GE AFV
Sbjct: 444 DEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVV 503
Query: 501 LKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKEM 559
L + + +QL +++ + ++ Y P+ I F LPKT TGKIQ+ LR K +M
Sbjct: 504 LASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDKEWKM 563
Query: 560 GPVRKSK 566
+++
Sbjct: 564 SGKARAQ 570
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580 | Back alignment and structure |
|---|
Score = 234 bits (599), Expect = 7e-70
Identities = 115/562 (20%), Positives = 215/562 (38%), Gaps = 73/562 (12%)
Query: 26 LDRAATVHPTRTSVVH-----GSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNI 80
+D A P + +++ +T+ + A+ K IG G V + +
Sbjct: 62 VDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSR 121
Query: 81 PAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHS-ASAVIMVDQEYFKLAEEALKIME 139
+ G+ GA+ L I + + + ++ + ++ + E+ +
Sbjct: 122 YDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDD--VPEQVDEAHA 179
Query: 140 EKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQS-- 197
E + + D + G +++ K L+ P F+ + ++
Sbjct: 180 EC------GDIPLKKAKVGGDVLE-------GWIDFRKELEESSPIFERPTGEVSTKNED 226
Query: 198 -IALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTL--PMFHCNGWCY- 253
+ ++SGT PK V + L+ + + ++ +T+ GW
Sbjct: 227 ICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLH-YTVADS-----GWGKC 280
Query: 254 TWS--LAAL-CGTSICL---RQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTIL 307
W G ++ + + AK + +KYGVT FCA P + ++
Sbjct: 281 VWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDLSH--Y 338
Query: 308 PLPHVVHVNTAGAAPPPSVLH-AMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPET 366
+ + AG P V + + G + +G +ET A T
Sbjct: 339 NFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTET---VVTIA-----------T 384
Query: 367 QARMKARQGVRFIGL----EKLDVIDTRTQQPVPADGKTIGEIVMSGN-----VVMKGYL 417
M+ + G IG K++++D R + GEIV++ + Y
Sbjct: 385 FPWMEPKPG--SIGKPTPGYKIELMD-RDGRLCEVG--EEGEIVINTMEGKPVGLFVHYG 439
Query: 418 KNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPA 477
K+P+ EET+ +G+YHTGD+ D Y+ R+ DII + G + EVE+ + HPA
Sbjct: 440 KDPERTEETWHDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPA 499
Query: 478 VLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFG 537
VLE ++ D G+ A + L + S+ L ++ + Y P+ I F
Sbjct: 500 VLECAITGVPDPVRGQVIKATIVLTKDYTPSDS--LKNELQDHVKNVTAPYKYPRIIEFV 557
Query: 538 P-LPKTATGKIQKHVLRAKAKE 558
P LPKT +GKI++ +R K +
Sbjct: 558 PELPKTISGKIRRVEIRDKDQS 579
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 | Back alignment and structure |
|---|
Score = 161 bits (410), Expect = 4e-43
Identities = 112/590 (18%), Positives = 191/590 (32%), Gaps = 104/590 (17%)
Query: 26 LDRAATVHPTRTSVVH----GSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIP 81
+ A P + S T+ Q Q + +A+ L G V ++
Sbjct: 17 VRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGL 76
Query: 82 AIYEAHFGVPMAGAVLNAVNIRL-----NAPTIAFLLGHSASAVIMVDQEYFKLAEEALK 136
+ +A G AG + AV I ++ +S ++++ ++ +
Sbjct: 77 PLIQAFLGCLYAGCI--AVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHI----KKFT 130
Query: 137 IMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQ 196
E +N +F I + + W+P +
Sbjct: 131 ADELNTNPKFLKIPAIALESIELNRSS-----------------------SWQPTSIKSN 167
Query: 197 SIA-LGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYL-WTLPMFHCNGWCYT 254
IA L YTSG+T PKGV++SH + + MN+ + W LP H G
Sbjct: 168 DIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSW-LPPHHDMGLIGC 226
Query: 255 WSLAALCGTSICLRQVTAKAVYS-------AIAKYGVTHFCAAP-----VVLNSIVNAPS 302
G + ++ + I KY T +P + I
Sbjct: 227 ILTPIYGGIQAIM--MSPFSFLQNPLSWLKHITKYKATI-SGSPNFAYDYCVKRIREEKK 283
Query: 303 EDTILPLPHVVHVNTAGAAPPPSVLH----AMSQKGFH---VTHTYGLSETYGPSTVCAW 355
E L L V + A + GF YGL+E + +
Sbjct: 284 EG--LDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEA---TLLVTG 338
Query: 356 KPEWDSLPPETQARMKARQG------------VRFIG----LEKLDVIDTRTQQPVPADG 399
S T A+ + + + + ++++ +ID T P D
Sbjct: 339 GTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQEVKIIDPDTLIPCDFD- 397
Query: 400 KTIGEIVMSGNVVMKGYLKNPKANEETFAN---------GWYHTGDLGVKHPDNYIEIKD 450
+GEI + N V KGY P+ FA + TGDLG H +N + +
Sbjct: 398 -QVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTG 455
Query: 451 RSKDIIISGGENISSVEVENM-MYLHPAVLEASVVARADERWGESP--CAFVTLKPEVDK 507
R KD+II G+N ++E M+ + A + E +D
Sbjct: 456 RIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEHEYKLTVMCEVKNRFMDD 515
Query: 508 SNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP---LPKTATGKIQKHVLRA 554
+ L +I + +IV P +P T +GKI+++ R
Sbjct: 516 VAQDNLFNEIFELVYENH--QLEVHTIVLIPLKAMPHTTSGKIRRNFCRK 563
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 2e-27
Identities = 86/479 (17%), Positives = 140/479 (29%), Gaps = 104/479 (21%)
Query: 26 LDRAATVHPTRTSVV---------HGSTRYTWLQTYQRCRRLASALCKRSIGL-GCTVAI 75
L A + P + + TW Q Y+R +A L G G V I
Sbjct: 30 LRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQEL--SRCGSTGDRVVI 87
Query: 76 IAPNIPAIYEAHFGVPMAGAV---LNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAE 132
AP A G AG + L+ + +L S+ I+
Sbjct: 88 SAPQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVV 147
Query: 133 EALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQ 192
+ + PP +I + D + + +
Sbjct: 148 QHVA-----RRPGESPPSIIEVDLLDLDAPN-----------------------GYTFKE 179
Query: 193 DEWQSIA-LGYTSGTTASPKGVVLSHRG------AYLMSLSVALIWGMNEGAVYL-WTLP 244
DE+ S A L YTSG+T +P GVV+SH+ + + + W LP
Sbjct: 180 DEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSW-LP 238
Query: 245 MFHCNGWCYTWSLAALCGTSICL---RQVTAKAVY--SAIAKYGVTHFCAAP-----VVL 294
+H G L G L + +A AAP +
Sbjct: 239 FYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHAF-SAAPNFAFELAA 297
Query: 295 NSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLH----AMSQKGFH---VTHTYGLSET- 346
+ L +++ + + + + ++ + +Y L+E
Sbjct: 298 RRTTDDDMAG--RDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEAT 355
Query: 347 ---------YGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGL-----EKLDVIDTRTQ 392
P TV + +SL I + ++D+ T
Sbjct: 356 VYVATSKPGQPPETVDF---DTESLSAGHAKPCAGGGATSLISYMLPRSPIVRIVDSDTC 412
Query: 393 QPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFAN------------GWYHTGDLGV 439
P T+GEI + G+ V GY + P +E TF W TGD G
Sbjct: 413 IECPDG--TVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGF 469
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 4e-25
Identities = 86/386 (22%), Positives = 144/386 (37%), Gaps = 66/386 (17%)
Query: 202 YTSGTTASPKGVVLSHRGA--YLMSLSVALIWGMNEGAVYLWTLPM-FHCNGWCYTWSLA 258
+TSGTT PKGV +SH + + + + + L P F + + +L
Sbjct: 152 FTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYWAPTL- 210
Query: 259 ALCGTSICLR----QVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVH 314
G ++ K +++ IA+ V + + P + + + + +P + H
Sbjct: 211 -ALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSD-DFCQAKMPALTH 268
Query: 315 VNTAGAAPPPSVLHAMSQKGFHVT--HTYGLSETYGPSTVCAWKPEWDSLPPETQARMKA 372
G S + ++ + YG +E TV S T+ +
Sbjct: 269 FYFDGEELTVSTARKLFERFPSAKIINAYGPTEA----TVAL------SAIEITREMVDN 318
Query: 373 RQGVRFIGLEKLD----VIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETF- 427
+ IG K D +ID + + + G GEI+++G V KGYL NP+ E F
Sbjct: 319 YTRLP-IGYPKPDSPTYIIDED-GKELSS-G-EQGEIIVTGPAVSKGYLNNPEKTAEAFF 374
Query: 428 AN-G--WYHTGDLGVKHPDNYIE--------IKDRSKDIIISG-----GENISSVEVENM 471
G YHTGD+G DN + IK +G +V
Sbjct: 375 TFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIK-------YAGYRIELE------DVSQQ 421
Query: 472 MYLHPAVLEASVVARADERWGESP--CAFVTLKPEV--DKSNEQQLAEDIMKFCRAKMPA 527
+ P V A V R ++ + A++ +K V E +L + I + M +
Sbjct: 422 LNQSPMVASAVAVPRYNKE-HKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDHMMS 480
Query: 528 YWVPKSIVF-GPLPKTATGKIQKHVL 552
Y +P ++ LP T GKI L
Sbjct: 481 YMMPSKFLYRDSLPLTPNGKIDIKTL 506
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 6e-24
Identities = 73/404 (18%), Positives = 122/404 (30%), Gaps = 97/404 (24%)
Query: 202 YTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNG----------- 250
YTSG+T +PKGV +S + + + G
Sbjct: 182 YTSGSTGTPKGVRVSRHNL------SSFSDAWGK-LIGNVAPKSLELGGVGKFLCLASRA 234
Query: 251 -----WCYTWSLAALCGTSICL--RQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSE 303
+ G R + + GVTH P +L+ P +
Sbjct: 235 FDVHIGEMFLAW--RFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLVPED 292
Query: 304 DTILPLPHVVHVNTAGAAPPPSVLHAMSQK-GFHVTHTYGLSETYGPSTVCAWKPEWDSL 362
PH+V++ G P S + + YG +E T+
Sbjct: 293 -----APHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEV----TIGC-------- 335
Query: 363 PPETQARMKARQGVRFIGL----EKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLK 418
+ R+ R IG V+ + + V G GE+V+ G++V GYL
Sbjct: 336 ---SAGRILPDSDTRCIGHPLGDSVAHVLAPGSNEHVKK-G-MAGELVIEGSLVANGYLN 390
Query: 419 NPKANEETFANGW----YHTGDLGVKHPDNYIE--------IKDRSKDIIISG-----GE 461
P A + F + Y TGD+ D+ I +K + G G
Sbjct: 391 RPDA--KGFCDINGRKMYRTGDIVRMDADSSILFLGRKDEQVK-------VRGQRLELG- 440
Query: 462 NISSVEVENMMYLHPAVLEASVVARADERWGESP--CAFVTLKPEVDKS-------NEQQ 512
EV ++ V + +FV + N ++
Sbjct: 441 -----EVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRGELRWINENYKE 495
Query: 513 LAEDIMKFCRAKMPAYWVPKSIVFGP-LP-KTATGKIQKHVLRA 554
+ + + C +PAY VP I+ +P + + K L
Sbjct: 496 INNSLRQACEQTLPAYMVPDFIIPISFIPLRDTSAKTDAKALEH 539
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511 | Back alignment and structure |
|---|
Score = 99.5 bits (249), Expect = 2e-22
Identities = 90/388 (23%), Positives = 142/388 (36%), Gaps = 77/388 (19%)
Query: 202 YTSGTTASPKGVVLSHRGAYLMSLSVALIWGM------NEGAVYLWTLPM-FHCNGWCYT 254
YTSG+T +PKGV +S + + + G ++L P F +
Sbjct: 150 YTSGSTGNPKGVQISAANL------QSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLY 203
Query: 255 WSLAALCGTSICL----RQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLP 310
L G ++ K ++ + K G+ + + P + + P LP
Sbjct: 204 PCL--QSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQ-DLLP 260
Query: 311 HVVHVNTAGAAPPPSVLHAMSQKGFHVT--HTYGLSETYGPSTVCA--WKPEWDSLPPET 366
H G P SV A+ ++ +TYG +E TV E
Sbjct: 261 HADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEA----TVAVTSV---------EI 307
Query: 367 QARMKARQGVRFIGLEKLD----VIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKA 422
+ +R +G K D ++D QP+P G GEIV++G V +GYL P+
Sbjct: 308 TNDVISRSESLPVGFAKPDMNIFIMDEE-GQPLPE-G-EKGEIVIAGPSVSRGYLGEPEL 364
Query: 423 NEETF-AN-G--WYHTGDLGVKHPDNYIE--------IKDRSKDIIISG-----GENISS 465
E+ F ++ G Y TGD G D I IK + G
Sbjct: 365 TEKAFFSHEGQWAYRTGDAGFI-QDGQIFCQGRLDFQIK-------LHGYRMELE----- 411
Query: 466 VEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKM 525
E+E + V A V+ E A + + + E QL I K A +
Sbjct: 412 -EIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEK-EFQLTSAIKKELAASL 469
Query: 526 PAYWVPKSIVF-GPLPKTATGKIQKHVL 552
PAY +P+ ++ + TA GKI + +
Sbjct: 470 PAYMIPRKFIYQDHIQMTANGKIDRKRI 497
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304 | Back alignment and structure |
|---|
Score = 99.2 bits (248), Expect = 8e-22
Identities = 84/387 (21%), Positives = 135/387 (34%), Gaps = 92/387 (23%)
Query: 202 YTSGTTASPKGVVLSHRGAYLMSLSVALIW-----GMNEGAVYLWTLPM-FHCNGWCYTW 255
YTSGTT PKG + +H L+ ++ +L F + +
Sbjct: 614 YTSGTTGKPKGNITTHANI------QGLVKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYA 667
Query: 256 SLAALCGTSICLR----QVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPH 311
S+ L + + + + + I + V A + N + +A + +
Sbjct: 668 SM--LNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGEDW----MKG 721
Query: 312 VVHVNTAGAAPPPSVLHAMSQK--GFHVTHTYGLSETYGPSTVCA-------WKPEWDSL 362
+ + G + + + + YG +E TV A SL
Sbjct: 722 LRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEG----TVFATAHVVHDLPDSISSL 777
Query: 363 P-----PETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYL 417
P +I L+ Q P G +GE+ +SG V KGY+
Sbjct: 778 PIGKPISNASV---------YI----LN----EQSQLQPF-G-AVGELCISGMGVSKGYV 818
Query: 418 KNPKANEETF-ANGW------YHTGDLGVKHPDNYIEIKDRS----KDIIISG-----GE 461
+E F N + Y TGDL PD IE R K I G
Sbjct: 819 NRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVK---IRGHRIELE- 874
Query: 462 NISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFC 521
E+E + +P V +A VVA E S A++ + ++ AED+
Sbjct: 875 -----EIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQLS-------AEDVKAHL 922
Query: 522 RAKMPAYWVPKSIVFGP-LPKTATGKI 547
+ ++PAY VP++ F LP T GK+
Sbjct: 923 KKQLPAYMVPQTFTFLDELPLTTNGKV 949
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512 | Back alignment and structure |
|---|
Score = 97.6 bits (244), Expect = 1e-21
Identities = 78/395 (19%), Positives = 134/395 (33%), Gaps = 91/395 (23%)
Query: 202 YTSGTTASPKGVVLSHRGAYLMSLSVALIWGM------NEGAVYLWTLPM-FHCNGWCYT 254
YTSG+T +PKGV +++ V+ G V+L P F +
Sbjct: 151 YTSGSTGNPKGVQITYNCL------VSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIY 204
Query: 255 WSLAALCGTSICLR----QVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLP 310
SL + G ++ K +++++ + + + + P + S LP
Sbjct: 205 PSL--VTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSE-SMLP 261
Query: 311 HVVHVNTAGAAPPPSVLHAMSQKGFHVT--HTYGLSETYGPSTVCA--WK------PEWD 360
++ G P V + ++ T +TYG +E TV ++
Sbjct: 262 NMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEA----TVAVTGIHVTEEVLDQYK 317
Query: 361 SLP-----PETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKG 415
SLP + + ++ P G GEIV+ G V G
Sbjct: 318 SLPVGYCKSDCRLL----------------IMKED-GTIAPD-G-EKGEIVIVGPSVSVG 358
Query: 416 YLKNPKANEETF-AN-G--WYHTGDLGVKHPDNYIE--------IKDRSKDIIISG---- 459
YL +P+ E+ F G Y TGD G + + IK + G
Sbjct: 359 YLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYNGRLDFQIK-------LHGYRME 410
Query: 460 -GENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIM 518
E+E+ + V A +V + A V E +L I
Sbjct: 411 LE------EIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSF-EKEFKLTSAIK 463
Query: 519 KFCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVL 552
K ++P Y +P+ ++ +P T GK+ + L
Sbjct: 464 KELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKL 498
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563 | Back alignment and structure |
|---|
Score = 97.6 bits (244), Expect = 1e-21
Identities = 85/390 (21%), Positives = 139/390 (35%), Gaps = 94/390 (24%)
Query: 202 YTSGTTASPKGVVLSHRGAYLMSLSVALI--WGMNEGAVYLWTLPM-FHCNGWCYTWSLA 258
YTSGTT +PKG +L H+G + +L V + E + F + W +L
Sbjct: 189 YTSGTTGNPKGTMLEHKG--ISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMAL- 245
Query: 259 ALCGTSICLR----QVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVH 314
L G S+ + I + +T P + + + +
Sbjct: 246 -LTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPER-------ILSIQT 297
Query: 315 VNTAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCA--W---KPEWDSLPP----- 364
+ TAG+A PS+++ + + YG +ET T+CA W K P
Sbjct: 298 LITAGSATSPSLVNKWKE-KVTYINAYGPTET----TICATTWVATKETIGHSVPIGAPI 352
Query: 365 -ETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKAN 423
TQ +I +D Q G GE+ + G + +GY K P+
Sbjct: 353 QNTQI---------YI----VD----ENLQLKSV-G-EAGELCIGGEGLARGYWKRPELT 393
Query: 424 EETF-ANGW------YHTGDLGVKHPDNYIE--------IKDRSKDIIISG-----GENI 463
+ F N + Y TGD D IE +K I G
Sbjct: 394 SQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVK-------IRGHRVELE--- 443
Query: 464 SSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRA 523
EVE+++ H + E +V D + CA+ + + E + +F
Sbjct: 444 ---EVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHIP-------LEQLRQFSSE 493
Query: 524 KMPAYWVPKSIVFGP-LPKTATGKIQKHVL 552
++P Y +P + +P T+ GKI + L
Sbjct: 494 ELPTYMIPSYFIQLDKMPLTSNGKIDRKQL 523
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652 | Back alignment and structure |
|---|
Score = 91.1 bits (227), Expect = 2e-19
Identities = 37/129 (28%), Positives = 62/129 (48%), Gaps = 3/129 (2%)
Query: 430 GWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADE 489
Y +GD + D Y I R D++ G + + E+E+ + HP + EA+VV
Sbjct: 494 NMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHA 553
Query: 490 RWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQ 548
G++ A+VTL + S E L ++ + R ++ P + + LPKT +GKI
Sbjct: 554 IKGQAIYAYVTLNHGEEPSPE--LYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIM 611
Query: 549 KHVLRAKAK 557
+ +LR A
Sbjct: 612 RRILRKIAA 620
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663 | Back alignment and structure |
|---|
Score = 91.1 bits (227), Expect = 2e-19
Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 6/134 (4%)
Query: 430 GWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADE 489
G+Y TGD K D YI I R D++ G +S+ E+E + P V E +VV D+
Sbjct: 503 GYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDD 562
Query: 490 RWGESPCAFVTLKPEVDKS-----NEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTA 543
G++ AFV LK + S Q + + ++ R + + PK I+ LPKT
Sbjct: 563 LTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTR 622
Query: 544 TGKIQKHVLRAKAK 557
+GKI + +LR
Sbjct: 623 SGKIMRRILRKILA 636
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620 | Back alignment and structure |
|---|
Score = 85.2 bits (212), Expect = 1e-17
Identities = 66/387 (17%), Positives = 112/387 (28%), Gaps = 96/387 (24%)
Query: 202 YTSGTTASPKGVVLSHRGAYLMSLSVALIW-----GMNEGAVYLWTLPM-FHCNGWCYTW 255
++SGTT PK + +H G L +L P+ F
Sbjct: 171 FSSGTTGRPKAIACTHAGI------TRLCLGQSFLAFAPQMRFLVNSPLSFDAATLEIWG 224
Query: 256 SLAALCGTSICLR---QVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHV 312
+L L G L + + I + G + N++V+ + L +
Sbjct: 225 AL--LNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDPDC----LGGL 278
Query: 313 VHVNTAGAAPPPSVLHAMSQK--GFHVTHTYGLSETYGPSTVCA--WK-----PEWDSLP 363
+ T G + + H+ + YG +E T E D +P
Sbjct: 279 RQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTEN----TTFTCCHVVTDDDLEEDDIP 334
Query: 364 -----PETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLK 418
T ++D Q + GEIV G + +GY
Sbjct: 335 IGKAIAGTAVL----------------LLDEH-GQEIAEPD-RAGEIVAFGAGLAQGYRN 376
Query: 419 NPKANEETF------ANG--WYHTGDLGVKHPDNYIEIKDRS----KDIIISG-----GE 461
+ +F Y TGD + R K ++G
Sbjct: 377 DAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVK---LNGYRLDLPA 433
Query: 462 NISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFC 521
+E P +L+ +++ R + CA+ Q L
Sbjct: 434 ------LEQRFRRQPGILDCALLVRERNGVKQLLCAWTGKADASP----QALLR------ 477
Query: 522 RAKMPAYWVPKSIVFGP-LPKTATGKI 547
++P + P + V LP TA GK+
Sbjct: 478 --QLPTWQRPHACVRVEALPLTAHGKL 502
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369 | Back alignment and structure |
|---|
Score = 74.8 bits (183), Expect = 1e-14
Identities = 34/266 (12%), Positives = 68/266 (25%), Gaps = 46/266 (17%)
Query: 182 GDPQFDWKPPQDEWQSIA-LGYTSGTTASPKGVVLSHRGAYLM---SLSVALIWGMNEGA 237
+P + P S + + GTT +PK VV + +S
Sbjct: 77 QEPVANLVPQGLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSG 136
Query: 238 VYLWTLPMFHCNGWCYTWSLAALCGTSICLRQVTAKAVYSAIAK---------------- 281
L +P A G + + V ++++
Sbjct: 137 NTLAAIPTGPHIVGAINKERALRLGGMFFSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQ 196
Query: 282 -------YGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQK- 333
+ P VL ++ P + + G + ++ +
Sbjct: 197 VQNTLMNQDIRFLVTTPPVLRELLKRPEVVL-QMKQSLAQITLGGTELNLDEIKFIASEI 255
Query: 334 --GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRT 391
+ +YG + G S T + + DV+D+ T
Sbjct: 256 LPDCEFSASYGSTSALGVSRSL----------LITSESQQVIYDSFSPFIT-YDVVDSIT 304
Query: 392 QQPVPADGKTIGEIVMSGNVVMKGYL 417
Q V G G +++ +
Sbjct: 305 AQTVE-YG-ERGNVIV--THLSPWAF 326
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 567 | |||
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 100.0 | |
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 100.0 | |
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 100.0 | |
| 1v25_A | 541 | Long-chain-fatty-acid-COA synthetase; ligase, stru | 100.0 | |
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 100.0 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 100.0 | |
| 3etc_A | 580 | AMP-binding protein; adenylate-forming acyl-COA sy | 100.0 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 100.0 | |
| 4fuq_A | 503 | Malonyl COA synthetase; ANL superfamily, methylma | 100.0 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 100.0 | |
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 100.0 | |
| 3fce_A | 512 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3e7w_A | 511 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 1t5h_X | 504 | 4-chlorobenzoyl COA ligase; adenylate-forming coen | 100.0 | |
| 1pg4_A | 652 | Acetyl-COA synthetase; AMP-forming, adenylate-form | 100.0 | |
| 3c5e_A | 570 | Acyl-coenzyme A synthetase ACSM2A, mitochondrial; | 100.0 | |
| 1ry2_A | 663 | Acetyl-coenzyme A synthetase 1, acyl-activating en | 100.0 | |
| 1amu_A | 563 | GRSA, gramicidin synthetase 1; peptide synthetase, | 100.0 | |
| 3l8c_A | 521 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3rg2_A | 617 | Enterobactin synthase component E (ENTE), 2,3-DIH | 100.0 | |
| 2v7b_A | 529 | Benzoate-coenzyme A ligase; benzoate oxidation, be | 100.0 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 100.0 | |
| 4gr5_A | 570 | Non-ribosomal peptide synthetase; MBTH-like domain | 100.0 | |
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 100.0 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 100.0 | |
| 3nyq_A | 505 | Malonyl-COA ligase; A/B topology ababa sandwich be | 100.0 | |
| 3ite_A | 562 | SIDN siderophore synthetase; ligase, non-ribosomal | 100.0 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 100.0 | |
| 3gqw_A | 576 | Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen | 100.0 | |
| 2vsq_A | 1304 | Surfactin synthetase subunit 3; ligase, peptidyl c | 100.0 | |
| 3t5a_A | 480 | Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C | 100.0 | |
| 4gs5_A | 358 | Acyl-COA synthetase (AMP-forming)/AMP-acid ligase | 100.0 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 100.0 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 100.0 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 100.0 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 99.96 | |
| 3lax_A | 109 | Phenylacetate-coenzyme A ligase; structural genomi | 99.53 | |
| 3gxs_A | 109 | Phenylacetate-coenzyme A ligase; APC62324.1, struc | 99.5 | |
| 4b2g_A | 609 | GH3-1 auxin conjugating enzyme; signaling protein, | 98.89 | |
| 4epl_A | 581 | Jasmonic acid-amido synthetase JAR1; ANL adenylati | 98.78 | |
| 4eql_A | 581 | 4-substituted benzoates-glutamate ligase GH3.12; f | 98.77 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 91.7 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 91.2 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 91.17 |
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-81 Score=661.55 Aligned_cols=511 Identities=24% Similarity=0.382 Sum_probs=403.0
Q ss_pred chhhhcccCHHHHHhhhhhcCCCceeEEECC--------ccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHH
Q 008389 13 NAANYMALTPLWFLDRAATVHPTRTSVVHGS--------TRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIY 84 (567)
Q Consensus 13 ~~~~~~~~t~~~~l~~~a~~~p~~~a~~~~~--------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~ 84 (567)
....+|.+|+.++|+++++++||++|+++.+ +++||+||+++++++|+.|.+.|+++||+|+++++|+++++
T Consensus 12 p~~~~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~ 91 (549)
T 3g7s_A 12 PSLYYPKISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYV 91 (549)
T ss_dssp CCCCCCCCCTTHHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH
T ss_pred CCCCcCCCCHHHHHHHHHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHH
Confidence 3456778999999999999999999999977 89999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcCCeeeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccc
Q 008389 85 EAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDL 164 (567)
Q Consensus 85 ~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 164 (567)
+++|||+++|++++|+++.++.+++.++++.++++++|++....+.+....... ....++.++..
T Consensus 92 ~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~--------~~~~~~~~~~~------- 156 (549)
T 3g7s_A 92 MTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKT--------GVERVFVVGGE------- 156 (549)
T ss_dssp HHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTS--------CCCEEEEETCS-------
T ss_pred HHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhC--------CCcEEEEeCCC-------
Confidence 999999999999999999999999999999999999999998877665543221 23445554422
Q ss_pred hhccCCChHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecC
Q 008389 165 KYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLP 244 (567)
Q Consensus 165 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p 244 (567)
...+.+++..............++++++|+|||||||.||+|.++|+++.+.+......+++.++|++++.+|
T Consensus 157 -------~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p 229 (549)
T 3g7s_A 157 -------VNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMP 229 (549)
T ss_dssp -------SSCHHHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSC
T ss_pred -------CcCHHHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCc
Confidence 1345555555443332222233489999999999999999999999999999999888899999999999999
Q ss_pred ccchhhhHHHHHHhhhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCC--cCCCCchhhhhccCCCC
Q 008389 245 MFHCNGWCYTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDT--ILPLPHVVHVNTAGAAP 322 (567)
Q Consensus 245 ~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~--~~~l~~lr~i~~~G~~l 322 (567)
++|.+++...+..+..|+++++...+++..+++.|+++++|++.++|+++..|++...... .. ++++|.+++||+++
T Consensus 230 ~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~-~~~lr~~~~gg~~l 308 (549)
T 3g7s_A 230 MFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYD-WSYLKVFATGAWPV 308 (549)
T ss_dssp TTSHHHHHHHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCC-CTTCCEEEEESSCC
T ss_pred HHHHHHHHHHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCC-ccceeEEEeCCccC
Confidence 9999999887778888999999888999999999999999999999999999987543322 33 88999999999999
Q ss_pred CHHHHHHHHhc-----C---CeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCc
Q 008389 323 PPSVLHAMSQK-----G---FHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQP 394 (567)
Q Consensus 323 ~~~~~~~~~~~-----~---~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~ 394 (567)
++++.+.+.+. + +++++.||+||++++++.+.. .......++|.|++++ +++|+|+++|++
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~----------~~~~~~~~~G~p~~~~-~~~i~d~~~g~~ 377 (549)
T 3g7s_A 309 APALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPP----------LRLDKSTTQGVPMSDI-ELKVISLEDGRE 377 (549)
T ss_dssp CHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCG----------GGGGGTTSCCEECTTC-EEEEECSSSCCE
T ss_pred CHHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCc----------cccCcCCCccccCCCC-EEEEEeCCCCcC
Confidence 99999998853 5 899999999999877665321 1123457899999999 899999778999
Q ss_pred cCCCCCceEEEEEecccccccccCCCccchhcc---cCC--ccccCceEEEeCCCcEEEeccccceeeeCceecchHHHH
Q 008389 395 VPADGKTIGEIVMSGNVVMKGYLKNPKANEETF---ANG--WYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVE 469 (567)
Q Consensus 395 ~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~---~~g--~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE 469 (567)
++.| +.|||+|+|+.++.|||++++.+...| .+| ||+|||+|++++||++++.||.||+||++|++|+|.|||
T Consensus 378 ~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE 455 (549)
T 3g7s_A 378 LGVG--ESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELE 455 (549)
T ss_dssp ECTT--CCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHH
T ss_pred CCCC--CceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHH
Confidence 9998 889999999999999999999999998 678 999999999999999999999999999999999999999
Q ss_pred HHHhcCCCceeeEEEEeecCCCCCcceEEEEEcCCc-cchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccc
Q 008389 470 NMMYLHPAVLEASVVARADERWGESPCAFVTLKPEV-DKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKI 547 (567)
Q Consensus 470 ~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~-~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi 547 (567)
++|.++|+|.+++|++.+++..|+.++++|+++++. ...+. ++|+++++++|+.|++|+.+.+++ ||+|++||+
T Consensus 456 ~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~----~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi 531 (549)
T 3g7s_A 456 ALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYRGKVDE----EDIIEWVRERISGYKRVREVEFVEELPRTASGKL 531 (549)
T ss_dssp HHHTTSTTEEEEEEECCCC------CEEEEEECSTTTTSCCH----HHHHHHHHTTCC-----CCCCEEEECC-------
T ss_pred HHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCccCcCCH----HHHHHHHHHhccCcccceEEEEeccCCCCCCcCE
Confidence 999999999999999999998899999999998873 13444 789999999999999999999888 999999999
Q ss_pred cHHHHHHHHHHcCCcc
Q 008389 548 QKHVLRAKAKEMGPVR 563 (567)
Q Consensus 548 ~r~~l~~~~~~~~~~~ 563 (567)
+|++|++++.+.....
T Consensus 532 ~R~~L~~~~~~~~~~~ 547 (549)
T 3g7s_A 532 LRRLLREKEAEGHHHH 547 (549)
T ss_dssp ----------------
T ss_pred eHHHHHHHhhcccccc
Confidence 9999999988776544
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-80 Score=649.25 Aligned_cols=510 Identities=24% Similarity=0.369 Sum_probs=437.7
Q ss_pred chhhhc-ccCHHHHHhhhhhcCCCceeEEEC--CccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHh
Q 008389 13 NAANYM-ALTPLWFLDRAATVHPTRTSVVHG--STRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFG 89 (567)
Q Consensus 13 ~~~~~~-~~t~~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA 89 (567)
...+.| ++|+.++|.++++++|+++|+++. ++++||+||.++++++|+.|++.|+++||+|+++++|++++++++||
T Consensus 14 ~~~~~p~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la 93 (536)
T 3ni2_A 14 PDIYIPKNLPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLG 93 (536)
T ss_dssp CCCCCCSSCCHHHHHTTTGGGSTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred CCCCCCCCCcHHHHHHHHhhcCCCceEEEECCCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 344455 589999999999999999999986 58999999999999999999999999999999999999999999999
Q ss_pred hhhcCCeeeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccC
Q 008389 90 VPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALG 169 (567)
Q Consensus 90 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 169 (567)
|+++|++++|+++.++.+++.++++.++++++|++....+.+.+...... ..++.++...
T Consensus 94 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~---------~~~~~~~~~~----------- 153 (536)
T 3ni2_A 94 ASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESD---------VKVMCVDSAP----------- 153 (536)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHHT---------CEEEESSCCC-----------
T ss_pred HHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhcC---------ceEEEecCCC-----------
Confidence 99999999999999999999999999999999999988877766544322 2344444321
Q ss_pred CChHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHH----HhccCCCcEEEEecCc
Q 008389 170 RGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVAL----IWGMNEGAVYLWTLPM 245 (567)
Q Consensus 170 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~----~~~~~~~d~~~~~~p~ 245 (567)
.+...++++....... .+.....++++++|+|||||||.||+|.++|+++.+.+..... .+++.++|++++.+|+
T Consensus 154 ~~~~~~~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~ 232 (536)
T 3ni2_A 154 DGCLHFSELTQADENE-APQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPM 232 (536)
T ss_dssp TTCEETHHHHTSCGGG-CCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCT
T ss_pred CCccCHHHHhhccccc-cccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecCh
Confidence 1223445554433222 1223456789999999999999999999999999888766543 3467899999999999
Q ss_pred cchhhhHH-HHHHhhhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCH
Q 008389 246 FHCNGWCY-TWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPP 324 (567)
Q Consensus 246 ~~~~g~~~-~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~ 324 (567)
+|.+|+.. .+..+..|+++++.+.+++..+++.++++++|++.++|+++..+++........ ++++|.+++||+++++
T Consensus 233 ~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-l~~lr~i~~gGe~l~~ 311 (536)
T 3ni2_A 233 FHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHD-LSSLRMIKSGGAPLGK 311 (536)
T ss_dssp TSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSC-CTTCCEEEEESSCCCH
T ss_pred HHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCC-CccceEEEECCCCCCH
Confidence 99999864 455667788888888899999999999999999999999999999887655555 8999999999999999
Q ss_pred HHHHHHHhc--CCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCce
Q 008389 325 SVLHAMSQK--GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTI 402 (567)
Q Consensus 325 ~~~~~~~~~--~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~ 402 (567)
++.+++.+. ++++++.||+||++++++.+...... ......+++|.|++++ +++|+|++++++++.| +.
T Consensus 312 ~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~------~~~~~~~~~G~~~~~~-~~~i~d~~~~~~~~~g--~~ 382 (536)
T 3ni2_A 312 ELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKE------PFDIKPGACGTVVRNA-EMKIVDPETGASLPRN--QP 382 (536)
T ss_dssp HHHHHHHHHCTTSEEEEEEECGGGSSEEEECGGGSSS------CCCCCTTCCCEECSSC-EEEEECTTTCCBCCTT--CC
T ss_pred HHHHHHHHHCCCCCccccccccccchhhhcccccCCc------cccCCCCCeeEeCCCc-EEEEEeCCCCcCCCCC--Cc
Confidence 999999854 89999999999998776654321110 1112347899999999 8999998889999998 88
Q ss_pred EEEEEecccccccccCCCccchhcc-cCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceee
Q 008389 403 GEIVMSGNVVMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEA 481 (567)
Q Consensus 403 Gei~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~ 481 (567)
|||+++|+.++.||+++++.+...| .+|||+|||+|++++||+++++||.||+||++|++|+|.+||++|.++|+|.++
T Consensus 383 GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a 462 (536)
T 3ni2_A 383 GEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDA 462 (536)
T ss_dssp EEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEE
T ss_pred cEEEEeCcccchhhcCChhHHHhhccCCCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceE
Confidence 9999999999999999999999999 689999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHHHH
Q 008389 482 SVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKE 558 (567)
Q Consensus 482 ~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~ 558 (567)
+|++.+++..|+.++++|+..++. ..+. ++++++++++|+.|++|..+++++ ||+|++||++|++|++++.+
T Consensus 463 ~Vv~~~~~~~g~~~~a~vv~~~~~-~~~~----~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 535 (536)
T 3ni2_A 463 AVVGLKDEDAGEVPVAFVVKSEKS-QATE----DEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKLAG 535 (536)
T ss_dssp EEEEEEETTTEEEEEEEEEECTTC-CCCH----HHHHHHHHTTSCGGGCCSEEEECSCCCBCTTSCBCHHHHHTC---
T ss_pred EEEeeecCCCCceeEEEEEecCCC-CCCH----HHHHHHHHHhccCCccccEEEEEecCCCCCCCCeeHHHHHHHhcc
Confidence 999999998899999999988765 4445 789999999999999999999888 99999999999999988754
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-80 Score=645.31 Aligned_cols=504 Identities=29% Similarity=0.407 Sum_probs=433.3
Q ss_pred chhhhcccCHHHHHhhhhhcCCCceeEEECCc--cccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhh
Q 008389 13 NAANYMALTPLWFLDRAATVHPTRTSVVHGST--RYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGV 90 (567)
Q Consensus 13 ~~~~~~~~t~~~~l~~~a~~~p~~~a~~~~~~--~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~ 90 (567)
........|+.++|+++++++|+++|+++.++ ++||+||.++++++|+.|.+.|+++||+|+++++|++++++++|||
T Consensus 9 ~~~~~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~ 88 (517)
T 3r44_A 9 VDDDDKMKNIGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGA 88 (517)
T ss_dssp ---CGGGGCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred CCCcccccCHHHHHHHHHHhCCCCeEEEeCCcCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHH
Confidence 33444578999999999999999999999876 9999999999999999999999999999999999999999999999
Q ss_pred hhcCCeeeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCC
Q 008389 91 PMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGR 170 (567)
Q Consensus 91 ~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 170 (567)
+++|++++|+++.++.+++.++++.++++++|++....+.+........ ....++.+..
T Consensus 89 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-------~~~~~~~~~~-------------- 147 (517)
T 3r44_A 89 AKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQAD-------PPGTVTDWIG-------------- 147 (517)
T ss_dssp HHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSS-------CCTTCCEEEE--------------
T ss_pred HHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccC-------CccEEEEccC--------------
Confidence 9999999999999999999999999999999999988776655433221 1111111111
Q ss_pred ChHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhh
Q 008389 171 GAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNG 250 (567)
Q Consensus 171 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g 250 (567)
...+.+.+....... +.....++++++|+|||||||.||+|.++|+++.+.+......++++++|++++.+|++|..+
T Consensus 148 -~~~~~~~~~~~~~~~-~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~ 225 (517)
T 3r44_A 148 -ADSLAERLRSAAADE-PAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAA 225 (517)
T ss_dssp -HHHHHHHHHHCCCCC-CCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHH
T ss_pred -cccHHHHhhccCcCC-CCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHH
Confidence 134455554433222 223457789999999999999999999999999999999888899999999999999999999
Q ss_pred hHHHHHHhhhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHH
Q 008389 251 WCYTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAM 330 (567)
Q Consensus 251 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~ 330 (567)
+...+..++.|+++++.+.+++..+++.++++++|++.++|+++..+.+........ ++++|.+++||+++++++.+.+
T Consensus 226 ~~~~~~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~i~~gGe~l~~~~~~~~ 304 (517)
T 3r44_A 226 LTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELD-APDFRYFITGGAPMPEALIKIY 304 (517)
T ss_dssp HHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCC-CTTCCEEEECSSCCCHHHHHHH
T ss_pred HHHHHHHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCC-CCcccEEEECCCCCCHHHHHHH
Confidence 988777777899988888899999999999999999999999999998875544444 8899999999999999999999
Q ss_pred HhcCCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEecc
Q 008389 331 SQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGN 410 (567)
Q Consensus 331 ~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~ 410 (567)
.+.++++++.||+||+++.++..... ......+++|.|++++ .++|+|++ +.+++.+ .|||+++|+
T Consensus 305 ~~~~~~~~~~YG~TE~~~~~~~~~~~---------~~~~~~~~~G~~~~~~-~~~i~d~~-~~~~~~g---~GEl~v~g~ 370 (517)
T 3r44_A 305 AAKNIEVVQGYALTESCGGGTLLLSE---------DALRKAGSAGRATMFT-DVAVRGDD-GVIREHG---EGEVVIKSD 370 (517)
T ss_dssp HHTTCEEEEEEECGGGTTCEEEECGG---------GTTTTTTCCBEECTTE-EEEEECTT-SCEESSE---EEEEEEEET
T ss_pred HhcCCcEEEeecccccccceeecCCc---------cccccCCCCCcCCCCe-EEEEECCC-CCCCCCC---CeEEEEeCc
Confidence 98899999999999998776654321 1123457899999999 89999976 8888775 699999999
Q ss_pred cccccccCCCccchhcccCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeecCC
Q 008389 411 VVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADER 490 (567)
Q Consensus 411 ~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~ 490 (567)
.++.||+++++.+...|.+|||+|||+|++++||++++.||.||+||++|++|+|.|||++|.++|+|.+++|++.+++.
T Consensus 371 ~v~~GY~~~p~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~ 450 (517)
T 3r44_A 371 ILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEK 450 (517)
T ss_dssp TSCSEETTCHHHHHHTEETTEEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETT
T ss_pred chhhhhCCChhhhHhhhcCCCEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHHHHcC
Q 008389 491 WGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKEMG 560 (567)
Q Consensus 491 ~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~ 560 (567)
.|+.+++++ ..++. ..+. ++++++++++|+.|++|..+++++ ||+|++||++|++|++++.+..
T Consensus 451 ~g~~~~a~v-~~~~~-~~~~----~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~ 515 (517)
T 3r44_A 451 WGEIAAAIV-VADQN-EVSE----QQIVEYCGTRLARYKLPKKVIFAEAIPRNPTGKILKTVLREQYSATV 515 (517)
T ss_dssp TEEEEEEEE-EECTT-TCCH----HHHHHHHHHHSCGGGSCSEEEECSCCCBCTTCCBCHHHHHHHHGGGC
T ss_pred cCceEEEEE-ECCCC-CCCH----HHHHHHHHHhCCCCCCCCEEEEECCCCCCCCcCccHHHHHHHHHhhc
Confidence 888888888 44443 3444 688999999999999999999888 9999999999999999998753
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-81 Score=654.11 Aligned_cols=512 Identities=32% Similarity=0.490 Sum_probs=397.7
Q ss_pred cccCHHHHHhhhhhcCCCceeEEE----CCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhc
Q 008389 18 MALTPLWFLDRAATVHPTRTSVVH----GSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMA 93 (567)
Q Consensus 18 ~~~t~~~~l~~~a~~~p~~~a~~~----~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~ 93 (567)
.++|+.++|+++++++|+++|+++ .++++||+||+++++++|+.|++.|+++||+|+++++|++++++++|||+++
T Consensus 16 ~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~ 95 (541)
T 1v25_A 16 EELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGM 95 (541)
T ss_dssp CCCCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhCCCceEEEEecCCCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhc
Confidence 357999999999999999999994 4579999999999999999999999999999999999999999999999999
Q ss_pred CCeeeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChH
Q 008389 94 GAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAV 173 (567)
Q Consensus 94 G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 173 (567)
|++++|+++.++.+++.++++.++++++|++.+..+.+......++ ....++.++.... ....
T Consensus 96 Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~----------~~~~ 158 (541)
T 1v25_A 96 GAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELK-------TVQHFVVMDEKAP----------EGYL 158 (541)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCS-------SCCEEEESSSCCC----------TTCE
T ss_pred CcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCC-------CccEEEEecCCCC----------cccc
Confidence 9999999999999999999999999999999887665544322111 2344555543211 1223
Q ss_pred HHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHH--HHHhccCCCcEEEEecCccchhhh
Q 008389 174 EYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSV--ALIWGMNEGAVYLWTLPMFHCNGW 251 (567)
Q Consensus 174 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~--~~~~~~~~~d~~~~~~p~~~~~g~ 251 (567)
.+++++...... ....++++++|+|||||||.||+|.+||+++....... ...++++++|++++.+|++|.+++
T Consensus 159 ~~~~~~~~~~~~----~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~ 234 (541)
T 1v25_A 159 AYEEALGEEADP----VRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAW 234 (541)
T ss_dssp EHHHHCCSCCCC----CCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHH
T ss_pred cHHHHhhccCCc----ccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHH
Confidence 455555433221 23456899999999999999999999999998776552 345678899999999999999999
Q ss_pred HHHHHHhhhcCeeEEecc-CCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHH
Q 008389 252 CYTWSLAALCGTSICLRQ-VTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAM 330 (567)
Q Consensus 252 ~~~~~~~~~g~~~~~~~~-~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~ 330 (567)
...+.+++.|+++++... +++..+++.|+++++|++.++|+++..|++........ ++++|.+++||+++++++.+++
T Consensus 235 ~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-l~~lr~i~~gG~~l~~~~~~~~ 313 (541)
T 1v25_A 235 CLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHR-LKTLRRLVVGGSAAPRSLIARF 313 (541)
T ss_dssp THHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCC-CSSCCEEEECSSCCCHHHHHHH
T ss_pred HHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCc-chhccEEEECCCCCCHHHHHHH
Confidence 777788888998888754 69999999999999999999999999998764433333 7899999999999999999999
Q ss_pred HhcCCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEecc
Q 008389 331 SQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGN 410 (567)
Q Consensus 331 ~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~ 410 (567)
..+++++++.||+||++++++.+.....+.............++|.|++++ +++|+|++ +++++.++++.|||+++|+
T Consensus 314 ~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~-~~~i~d~~-g~~~~~~~~~~GEl~v~g~ 391 (541)
T 1v25_A 314 ERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLV-RLRVADEE-GRPVPKDGKALGEVQLKGP 391 (541)
T ss_dssp HHTTCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTC-EEEEECTT-SCBCCSSSCCCEEEEEEST
T ss_pred HHhCCceeecccccccccceecccccccccccCccccccccCCCCCcCCCc-EEEEECCC-CCCCCCCCCcceEEEEeCc
Confidence 767999999999999987766554332222222222234568899999999 89999987 8888865446899999999
Q ss_pred cccccccCCCccchhccc-CCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeecC
Q 008389 411 VVMKGYLKNPKANEETFA-NGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADE 489 (567)
Q Consensus 411 ~~~~gy~~~~~~~~~~~~-~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~ 489 (567)
.++.||+++++.+...|. +|||+|||+|++++||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++
T Consensus 392 ~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~ 471 (541)
T 1v25_A 392 WITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHP 471 (541)
T ss_dssp TSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECS
T ss_pred chhccccCChhhhhhhccCCCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCceEEEEEEecCC
Confidence 999999999999999996 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceEEEEEcCCccchhhHHHHHHHHHHHHh-cCCCCCCCceeecCc-ccCCCCccccHHHHHHHHHHc
Q 008389 490 RWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRA-KMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKEM 559 (567)
Q Consensus 490 ~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~ 559 (567)
..++.++++|++. +. ..+. +++++++++ +|+.|++|..+++++ ||+|++||++|++|++++.+.
T Consensus 472 ~~~~~~~a~vv~~-~~-~~~~----~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 537 (541)
T 1v25_A 472 KWQERPLAVVVPR-GE-KPTP----EELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKNY 537 (541)
T ss_dssp SSSEEEEECC-------------------------CCCTTTSCSBC--------------CCTTHHHHSTTS
T ss_pred CcCceEEEEEEEC-CC-CCCH----HHHHHHHHhccCccccCCcEEEEeCCCCCCCccCeeHHHHHHHHHHh
Confidence 8899999999876 22 3333 678888988 899999999999888 999999999999999987543
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-81 Score=656.81 Aligned_cols=520 Identities=20% Similarity=0.262 Sum_probs=342.8
Q ss_pred cchhhhcccCHHHHHhhhhhcCCCceeEE---E--CCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHH
Q 008389 12 KNAANYMALTPLWFLDRAATVHPTRTSVV---H--GSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEA 86 (567)
Q Consensus 12 ~~~~~~~~~t~~~~l~~~a~~~p~~~a~~---~--~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~ 86 (567)
....++++.|+.++|.+.++++|+++|++ + .++++||+||.++++++|+.|++.|+++||+|+++++|+++++++
T Consensus 12 ~~~~~~~~~tl~~~l~~~a~~~p~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~ 91 (550)
T 3rix_A 12 APFYPLEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMP 91 (550)
T ss_dssp CCSSCCCCSCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHH
T ss_pred CCCCCcccCCHHHHHHHHHHhCCCCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHH
Confidence 35566778999999999999999999986 3 358999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCCeeeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchh
Q 008389 87 HFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKY 166 (567)
Q Consensus 87 ~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 166 (567)
+|||+++|++++|+++.++.+++.++++.++++++|++.+..+.+.......+ ....++.++.....
T Consensus 92 ~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~------ 158 (550)
T 3rix_A 92 VLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLP-------IIQKIIIMDSKTDY------ 158 (550)
T ss_dssp HHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCT-------TCCEEEETTCSSCB------
T ss_pred HHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCC-------CcceEEEEcCCccc------
Confidence 99999999999999999999999999999999999999998887776655554 45566665543211
Q ss_pred ccCCChHHHHHHHhcCCCC------CCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHH---hccCCCc
Q 008389 167 ALGRGAVEYEKFLQTGDPQ------FDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALI---WGMNEGA 237 (567)
Q Consensus 167 ~~~~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~---~~~~~~d 237 (567)
....++.+++...... ..+.....++++++|+|||||||.||+|.++|+++...+...... +++.+++
T Consensus 159 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~ 235 (550)
T 3rix_A 159 ---QGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDT 235 (550)
T ss_dssp ---TTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTC
T ss_pred ---cCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCc
Confidence 1223455555432221 111222345789999999999999999999999998887766554 4678999
Q ss_pred EEEEecCccchhhhHHHHHHhhhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhc
Q 008389 238 VYLWTLPMFHCNGWCYTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNT 317 (567)
Q Consensus 238 ~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~ 317 (567)
++++.+|++|.+|+...+.+++.|+++++...+++..+++.|+++++|++.++|+++..+++........ ++++|.+++
T Consensus 236 ~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-l~~lr~i~~ 314 (550)
T 3rix_A 236 AILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYD-LSNLHEIAS 314 (550)
T ss_dssp EEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSC-CTTCCEEEE
T ss_pred EEEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccC-cccccEEEE
Confidence 9999999999999988888888999999998899999999999999999999999999999887665555 899999999
Q ss_pred cCCCCCHHHHHHHHh-cCC-eeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCcc
Q 008389 318 AGAAPPPSVLHAMSQ-KGF-HVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPV 395 (567)
Q Consensus 318 ~G~~l~~~~~~~~~~-~~~-~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~ 395 (567)
||+++++++.+++.+ ++. .+++.||+||+++.++.+... ....+++|.|++++ +++|+|+++++++
T Consensus 315 gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~-----------~~~~~~vG~~~~~~-~~~i~d~~~~~~~ 382 (550)
T 3rix_A 315 GGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEG-----------DDKPGAVGKVVPFF-EAKVVDLDTGKTL 382 (550)
T ss_dssp CSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTT-----------CCCTTEEEEECTTC-EEEEECTTTCCBC
T ss_pred ecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCCCC-----------CCCCCCcccccCCc-EEEEEeCCCCcCC
Confidence 999999999999985 466 499999999998776654321 12347899999999 8999998889999
Q ss_pred CCCCCceEEEEEecccccccccCCCccchhcc-cCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhc
Q 008389 396 PADGKTIGEIVMSGNVVMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYL 474 (567)
Q Consensus 396 ~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~ 474 (567)
+.| +.|||+|+|+.++.||+++++.+...| .+|||+|||+|++++||++++.||.||+||++|++|+|.+||++|.+
T Consensus 383 ~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~ 460 (550)
T 3rix_A 383 GVN--QRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQ 460 (550)
T ss_dssp CTT--CCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC-------------------------
T ss_pred CCC--CCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHh
Confidence 998 889999999999999999999999998 79999999999999999999999999999999999999999999999
Q ss_pred CCCceeeEEEEeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCc-eeecCc-ccCCCCccccHHHH
Q 008389 475 HPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPK-SIVFGP-LPKTATGKIQKHVL 552 (567)
Q Consensus 475 ~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~-~i~~~~-lP~t~~GKi~r~~l 552 (567)
+|+|.+++|++.+++..|+.++++|++.++. ..+. ++++++++++++.+..|. .+++++ ||+|++||++|++|
T Consensus 461 ~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~-~~~~----~~l~~~~~~~l~~~~~~~~~i~~v~~lP~t~~GKi~r~~L 535 (550)
T 3rix_A 461 HPNIFDAGVAGLPDDDAGELPAAVVVLEHGK-TMTE----KEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKI 535 (550)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcceEEEEEeecCCCCceEEEEEEecCCC-CCCH----HHHHHHHHHhcccccccCCceEEEeecCCCCCcceeHHHH
Confidence 9999999999999999899999999988765 4444 688899999999886655 577777 99999999999999
Q ss_pred HHHHHHcCCccccCC
Q 008389 553 RAKAKEMGPVRKSKL 567 (567)
Q Consensus 553 ~~~~~~~~~~~~~~~ 567 (567)
++++.+.....++||
T Consensus 536 ~~~~~~~~~~~~~~l 550 (550)
T 3rix_A 536 REILIKAKKGGKSKL 550 (550)
T ss_dssp ---------------
T ss_pred HHHHHhhccccccCC
Confidence 999998887777775
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-79 Score=640.13 Aligned_cols=500 Identities=22% Similarity=0.317 Sum_probs=425.3
Q ss_pred hcccCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCe
Q 008389 17 YMALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAV 96 (567)
Q Consensus 17 ~~~~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~ 96 (567)
|++.|+.++|+++++++|+++|+++.++++||+||+++++++|+.|.+.|+++||+|+++++|++++++++|||+++|++
T Consensus 22 ~~~~tl~~~l~~~a~~~p~~~A~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~ 101 (539)
T 1mdb_A 22 WAGETFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGAL 101 (539)
T ss_dssp SCSCCHHHHHHHHHHHHTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCE
T ss_pred ccCCCHHHHHHHHHHHCCCCEEEEeCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeE
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccCChHHHHHHHhccCceEEEEcccch-----HHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCC
Q 008389 97 LNAVNIRLNAPTIAFLLGHSASAVIMVDQEYF-----KLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRG 171 (567)
Q Consensus 97 ~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 171 (567)
++|+++.++.+++.++++.++++++|++.+.. ..+......++ ....++..+....
T Consensus 102 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~------------ 162 (539)
T 1mdb_A 102 PVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLP-------TLKNIIVAGEAEE------------ 162 (539)
T ss_dssp EEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCT-------TCCCEEEESCCTT------------
T ss_pred EecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCC-------CccEEEEcCCccc------------
Confidence 99999999999999999999999999987642 22222222222 3344444332110
Q ss_pred hHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhh
Q 008389 172 AVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGW 251 (567)
Q Consensus 172 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~ 251 (567)
+.++...... ........++++++++|||||||.||+|.++|+++.+.+......++++++|++++.+|++|.+++
T Consensus 163 ---~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~ 238 (539)
T 1mdb_A 163 ---FLPLEDLHTE-PVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPL 238 (539)
T ss_dssp ---SEEGGGCCCC-CCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHH
T ss_pred ---hhhhhhcccc-ccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchh
Confidence 1111111111 111223567899999999999999999999999999998888888899999999999999999998
Q ss_pred HH--HHHHhhhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHH
Q 008389 252 CY--TWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHA 329 (567)
Q Consensus 252 ~~--~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~ 329 (567)
.. .+.++..|+++++.+.+++..+++.|+++++|++.++|+++..+++........ ++++|.+++||+++++++.++
T Consensus 239 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-l~~lr~~~~gG~~l~~~~~~~ 317 (539)
T 1mdb_A 239 SSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDD-LSSLQVLQVGGAKFSAEAARR 317 (539)
T ss_dssp HSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCC-CTTCCEEEEESSCCCHHHHTT
T ss_pred hHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCC-ccceeEEEEcCCCCCHHHHHH
Confidence 74 667778899988888899999999999999999999999999998764433334 889999999999999999999
Q ss_pred HHh-cCCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEe
Q 008389 330 MSQ-KGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMS 408 (567)
Q Consensus 330 ~~~-~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~ 408 (567)
+.+ +++++++.||+||++..+.. . .........++|.|+++..+++|+|++ +++++.| +.|||+++
T Consensus 318 ~~~~~~~~~~~~YG~TE~~~~~~~-~---------~~~~~~~~~~~G~p~~~~~~~~i~d~~-~~~~~~g--~~GEl~v~ 384 (539)
T 1mdb_A 318 VKAVFGCTLQQVFGMAEGLVNYTR-L---------DDPEEIIVNTQGKPMSPYDESRVWDDH-DRDVKPG--ETGHLLTR 384 (539)
T ss_dssp HHHHTCSEEEEEEECTTSCEEECC-T---------TSCHHHHHHCCCEESSTTCEEEEECTT-SCBCCTT--CCEEEEEE
T ss_pred HHHHhCCcEEEEEcCCCCcccccC-C---------CCcHHhcCCCCCcccCCCceEEEECCC-CCCCcCC--CcceEEee
Confidence 985 59999999999996422221 1 011123457899999865479999976 8999998 88999999
Q ss_pred cccccccccCCCccchhcc-cCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEee
Q 008389 409 GNVVMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARA 487 (567)
Q Consensus 409 ~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~ 487 (567)
|+.++.|||++++.+...| .+|||+|||+|++++||++++.||.||+||++|++|+|.|||++|.++|+|.+++|++.+
T Consensus 385 g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~ 464 (539)
T 1mdb_A 385 GPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMP 464 (539)
T ss_dssp CTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEE
T ss_pred CcccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEEEecc
Confidence 9999999999999999999 599999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhc-CCCCCCCceeecCc-ccCCCCccccHHHHHHHHHHc
Q 008389 488 DERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAK-MPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKEM 559 (567)
Q Consensus 488 ~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~-l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~ 559 (567)
++..|+.++++|++.+. ..+. ++++++++++ |+.|++|+.+++++ ||+|++||++|++|++++.+.
T Consensus 465 ~~~~g~~~~a~vv~~~~--~~~~----~~l~~~l~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 532 (539)
T 1mdb_A 465 DQFLGERSCVFIIPRDE--APKA----AELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEK 532 (539)
T ss_dssp ETTTEEEEEEEEEESSS--CCCH----HHHHHHHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHHH
T ss_pred ccccCceEEEEEEECCC--CCCH----HHHHHHHHhCCCCcccCCCEEEEeccCCCCCCcCEeHHHHHHHHHHH
Confidence 99888999999998743 3344 6889999997 99999999999888 999999999999999998765
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-79 Score=640.97 Aligned_cols=504 Identities=21% Similarity=0.295 Sum_probs=411.0
Q ss_pred ccCHH-HHHhhhhhcCCCceeEEEC-----CccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhh
Q 008389 19 ALTPL-WFLDRAATVHPTRTSVVHG-----STRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPM 92 (567)
Q Consensus 19 ~~t~~-~~l~~~a~~~p~~~a~~~~-----~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~ 92 (567)
..++. ++|+++++++||++|+++. ++++||+||.++++++|+.|++.|+++||+|+++++|++++++++|||++
T Consensus 54 ~~n~~~~~l~~~a~~~pd~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~lA~~~ 133 (580)
T 3etc_A 54 NFNFAYDVVDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHK 133 (580)
T ss_dssp SCCHHHHTHHHHHHHCTTCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhhCCCCEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHh
Confidence 35666 9999999999999999972 37899999999999999999999999999999999999999999999999
Q ss_pred cCCeeeeccccCChHHHHHHHhccCceEEEEcccch--HHHHHHHHHHhhhcCCCCCC-CeEEEecCCCCCcccchhccC
Q 008389 93 AGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYF--KLAEEALKIMEEKSNGRFKP-PLLIVIGDESCDPKDLKYALG 169 (567)
Q Consensus 93 ~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~ 169 (567)
+|++++|+++.++.+++.++++.++++++|++.+.. ..+.+....++ .. ..++.++... .
T Consensus 134 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~----------~ 196 (580)
T 3etc_A 134 LGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECG-------DIPLKKAKVGGDV----------L 196 (580)
T ss_dssp HTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHC-------SCCCEEEEESSSC----------C
T ss_pred CCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCC-------CcceEEEEeCCcc----------c
Confidence 999999999999999999999999999999988765 55555544443 23 4455554321 1
Q ss_pred CChHHHHHHHhcCCCCCCCC---CCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCcc
Q 008389 170 RGAVEYEKFLQTGDPQFDWK---PPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMF 246 (567)
Q Consensus 170 ~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~ 246 (567)
.+...+.+.+.......... ....++++++|+|||||||.||+|.++|.++...+......+++.+++++++..|++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (580)
T 3etc_A 197 EGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSG 276 (580)
T ss_dssp TTCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTT
T ss_pred cccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCChH
Confidence 23455666666554433222 235678999999999999999999999999888777666667889999999999999
Q ss_pred chhhhHHH-HHHhhhcCeeEEe--ccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCC
Q 008389 247 HCNGWCYT-WSLAALCGTSICL--RQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPP 323 (567)
Q Consensus 247 ~~~g~~~~-~~~~~~g~~~~~~--~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~ 323 (567)
|..++... +..+..|+++++. ..+++..+++.|+++++|++.++|++++.|.+... .... ++++|.+++|||+++
T Consensus 277 ~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~-~~~~-l~~lr~i~~gGe~l~ 354 (580)
T 3etc_A 277 WGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDL-SHYN-FSTLKYAVVAGEPLN 354 (580)
T ss_dssp STHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSCC----C-CTTCCEEEECSSCCC
T ss_pred HHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhccc-ccCC-CccceEEEEccCCCC
Confidence 88877654 4445566666665 46899999999999999999999999999998632 2333 889999999999999
Q ss_pred HHHHHHHHh-cCCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCce
Q 008389 324 PSVLHAMSQ-KGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTI 402 (567)
Q Consensus 324 ~~~~~~~~~-~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~ 402 (567)
+++.+++.+ +++++++.||+||++..++..... ....+++|.|+|++ +++|+|++ |++++.| +.
T Consensus 355 ~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~-----------~~~~~~~G~p~~~~-~v~ivd~~-g~~~~~g--~~ 419 (580)
T 3etc_A 355 PEVFNRFLEFTGIKLMEGFGQTETVVTIATFPWM-----------EPKPGSIGKPTPGY-KIELMDRD-GRLCEVG--EE 419 (580)
T ss_dssp HHHHHHHHHHHSCCCEEEECCTTSSCCEECCTTS-----------CCCTTCCBEECTTC-EEEEECTT-SCBCCTT--CC
T ss_pred HHHHHHHHHHhCCeEecccccccccceeecCCCC-----------CCCCCccccCCCCC-EEEEECCC-CCCCCCC--Cc
Confidence 999999985 499999999999997665543221 12347899999999 89999987 9999998 88
Q ss_pred EEEEEec-----ccccccccCCCccchhcccCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCC
Q 008389 403 GEIVMSG-----NVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPA 477 (567)
Q Consensus 403 Gei~v~~-----~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~ 477 (567)
|||+++| +.++.||+++++.+.+.|.+|||+|||+|++++||+++++||.||+||++|++|+|.|||++|.++|+
T Consensus 420 GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~ 499 (580)
T 3etc_A 420 GEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPA 499 (580)
T ss_dssp EEEEEECTTCCCTTCCCEETTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTTSTT
T ss_pred eEEEEecCCCCCCeeeccccCCHhHHHhhcCCCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCC
Confidence 9999997 78999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeEEEEeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHH
Q 008389 478 VLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKA 556 (567)
Q Consensus 478 i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~ 556 (567)
|.+++|++.+++..|+.+.++|++.++... .+.+.++|+++++++|+.|++|+.+.+++ ||+|++||++|++|++++
T Consensus 500 V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~~--~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~sGKi~R~~Lr~~~ 577 (580)
T 3etc_A 500 VLECAITGVPDPVRGQVIKATIVLTKDYTP--SDSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRDKD 577 (580)
T ss_dssp EEEEEEEEEEETTTEEEEEEEEEECTTCCC--CHHHHHHHHHHHHHHSCGGGCCSEEEEECC------------------
T ss_pred eeeEEEEeeeccCCCcEEEEEEEECCCCCC--CHHHHHHHHHHHHhhCCCccCCeEEEEeCCCCCCCCcCCcHHHHHhHh
Confidence 999999999999989999999999887522 22345789999999999999999999888 999999999999999987
Q ss_pred HH
Q 008389 557 KE 558 (567)
Q Consensus 557 ~~ 558 (567)
.+
T Consensus 578 ~~ 579 (580)
T 3etc_A 578 QS 579 (580)
T ss_dssp --
T ss_pred hc
Confidence 64
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-79 Score=638.86 Aligned_cols=503 Identities=20% Similarity=0.275 Sum_probs=430.0
Q ss_pred cCHHH-HHhhhhhcCCCceeEEE--CCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCe
Q 008389 20 LTPLW-FLDRAATVHPTRTSVVH--GSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAV 96 (567)
Q Consensus 20 ~t~~~-~l~~~a~~~p~~~a~~~--~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~ 96 (567)
+|+.+ +|.+.++++ +++|+++ .++++||+||.++++++|+.|++.|+++||+|+++++|++++++++|||+++|++
T Consensus 25 ~~l~~~~l~~~~~~~-~~~A~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~~Gav 103 (548)
T 2d1s_A 25 AGTQLRKYMERYAKL-GAIAFTNAVTGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVG 103 (548)
T ss_dssp HHHHHHHHHHHHHHH-TCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCE
T ss_pred CcHHHHHHHhhhccc-CCceEEEcCCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhhCCE
Confidence 58899 888889999 9999998 4689999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHHH
Q 008389 97 LNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYE 176 (567)
Q Consensus 97 ~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 176 (567)
++|+++.++.+++.++++.++++++|++.+..+.+......++ ....++.++.... ......++
T Consensus 104 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~---------~~~~~~~~ 167 (548)
T 2d1s_A 104 VAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVT-------TIKTIVILDSKVD---------YRGYQCLD 167 (548)
T ss_dssp EEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHST-------TCCEEEETTCSSC---------BTTBCBHH
T ss_pred EeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCC-------CCCEEEEeCCccc---------ccccccHH
Confidence 9999999999999999999999999999988766655433322 2344555543210 01122455
Q ss_pred HHHhcCCCCCCCCCCC------CcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHH---hccCCCcEEEEecCccc
Q 008389 177 KFLQTGDPQFDWKPPQ------DEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALI---WGMNEGAVYLWTLPMFH 247 (567)
Q Consensus 177 ~~l~~~~~~~~~~~~~------~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~---~~~~~~d~~~~~~p~~~ 247 (567)
+++........+.... .++++++++|||||||.||+|.+||+++.+.+...... ++++++|++++.+|++|
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h 247 (548)
T 2d1s_A 168 TFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHH 247 (548)
T ss_dssp HHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTS
T ss_pred HHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHH
Confidence 6555432210111111 23899999999999999999999999999888776665 67889999999999999
Q ss_pred hhhhHHHHHHhhhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHH
Q 008389 248 CNGWCYTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVL 327 (567)
Q Consensus 248 ~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~ 327 (567)
.+|+...+...+.|+++++...+++..+++.|+++++|+++++|+++..|.+........ ++++|.+++||+++++++.
T Consensus 248 ~~g~~~~~~~~l~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-l~~lr~i~~gG~~l~~~~~ 326 (548)
T 2d1s_A 248 GFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYD-LSNLVEIASGGAPLSKEVG 326 (548)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSC-CTTCCEEEECSSCCCHHHH
T ss_pred HHHHHHHHHHHhcCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCccccccc-ccceeEEEEcCccCCHHHH
Confidence 999877555555888888888899999999999999999999999999999876544444 8899999999999999999
Q ss_pred HHHHhc--CCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEE
Q 008389 328 HAMSQK--GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEI 405 (567)
Q Consensus 328 ~~~~~~--~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei 405 (567)
+++.+. ++++++.||+||+++.++.+... ....+++|.|+|++ +++|+|++++++++.| +.|||
T Consensus 327 ~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~-----------~~~~~~~G~~~~~~-~~~i~d~~~~~~~~~g--~~GEl 392 (548)
T 2d1s_A 327 EAVARRFNLPGVRQGYGLTETTSAIIITPEG-----------DDKPGASGKVVPLF-KAKVIDLDTKKSLGPN--RRGEV 392 (548)
T ss_dssp HHHHHHTTCSCCEEEEECGGGSSEEEECCTT-----------CCCTTCCBEECTTC-EEEEECTTTCCBCCTT--CCEEE
T ss_pred HHHHHHcCCCceeeccccccccceeeecCcc-----------cCCCCCCCccCCCc-eEEEEeCCcCccCCCC--CCeEE
Confidence 999854 68899999999998766543211 12347899999999 8999997779999998 78999
Q ss_pred EEecccccccccCCCccchhcc-cCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEE
Q 008389 406 VMSGNVVMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVV 484 (567)
Q Consensus 406 ~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~ 484 (567)
+++|+.++.||+++++.+...| .+|||+|||+|++++||++++.||.||+||++|++|+|.+||++|.++|+|.+++|+
T Consensus 393 ~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V~ 472 (548)
T 2d1s_A 393 CVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVA 472 (548)
T ss_dssp EEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEEEE
T ss_pred EECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCCCccEEEEE
Confidence 9999999999999999999999 689999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCc-eeecCc-ccCCCCccccHHHHHHHHHHc
Q 008389 485 ARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPK-SIVFGP-LPKTATGKIQKHVLRAKAKEM 559 (567)
Q Consensus 485 ~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~-~i~~~~-lP~t~~GKi~r~~l~~~~~~~ 559 (567)
+.+++..|+.++++|++.++. ..+. ++++++++++|+.|+.|. .+.+++ ||+|++||++|++|++++.+.
T Consensus 473 ~~~~~~~g~~~~a~vv~~~~~-~~~~----~~l~~~~~~~l~~~~~p~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 544 (548)
T 2d1s_A 473 GVPDPVAGELPGAVVVLESGK-NMTE----KEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREILKKP 544 (548)
T ss_dssp EEEETTTEEEEEEEEEECTTC-CCCH----HHHHHHHHTTSCGGGSCTTCEEECSSCCBCTTSCBCHHHHHHHHHSC
T ss_pred EEEcCCCCeeeEEEEEEcCCC-CCCH----HHHHHHHHHhccccccccccEEEccCCCCCCcchhHHHHHHHHHhhh
Confidence 999998889999999988765 3444 688999999999999999 888888 999999999999999998754
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-79 Score=632.77 Aligned_cols=491 Identities=22% Similarity=0.330 Sum_probs=422.8
Q ss_pred HHHhhhhhcCCCceeEE---ECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCeeeec
Q 008389 24 WFLDRAATVHPTRTSVV---HGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAV 100 (567)
Q Consensus 24 ~~l~~~a~~~p~~~a~~---~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i 100 (567)
++|++.++++|+++|+. +.++++||+||.++++++|+.|.++|+++||+|+++++|++++++++|||+++|++++|+
T Consensus 4 ~l~~~~a~~~p~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl 83 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPL 83 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEEETTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEEC
T ss_pred hHHHHHHHhCCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEec
Confidence 46888999999999998 356899999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHHHHHHh
Q 008389 101 NIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQ 180 (567)
Q Consensus 101 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 180 (567)
++.++.+++.++++.++++++|++.+..+.+........ ..++.+..... ..+.+...
T Consensus 84 ~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~-------------~~~~~~~~ 141 (503)
T 4fuq_A 84 NTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVG---------ATVETLGPDGR-------------GSLTDAAA 141 (503)
T ss_dssp CTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHT---------CEEEECCTTSC-------------SHHHHHHH
T ss_pred CCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcC---------ceEEEecCCcc-------------cccchhhh
Confidence 999999999999999999999999887665555443332 23333332211 11222222
Q ss_pred cCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhhHH-HHHHhh
Q 008389 181 TGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCY-TWSLAA 259 (567)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~-~~~~~~ 259 (567)
..... .......++++++|+|||||||.||+|.++|+++.+.+......++++++|++++.+|++|.+|+.. .+..++
T Consensus 142 ~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~ 220 (503)
T 4fuq_A 142 GASEA-FATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLF 220 (503)
T ss_dssp TSCSC-CCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHH
T ss_pred cCCCC-cCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHH
Confidence 22211 1223456789999999999999999999999999999999989999999999999999999999754 556677
Q ss_pred hcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHHHhc-CCeee
Q 008389 260 LCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQK-GFHVT 338 (567)
Q Consensus 260 ~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~-~~~i~ 338 (567)
.|+++++.+.+++..+++.++ ++|++.++|+++..+++........ ++++|.+++||+++++++.+.+.+. +++++
T Consensus 221 ~g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~ 297 (503)
T 4fuq_A 221 ARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTKET-TGHMRLFISGSAPLLADTHREWSAKTGHAVL 297 (503)
T ss_dssp TTCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCSTTT-TTTCCEEEECSSCCCHHHHHHHHHHHSCCEE
T ss_pred hCCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCccccc-hhhcEEEEECCCCCCHHHHHHHHHHhCCCcc
Confidence 888888888899999999998 8999999999999999887655555 8899999999999999999999855 99999
Q ss_pred eccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEecccccccccC
Q 008389 339 HTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLK 418 (567)
Q Consensus 339 ~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~ 418 (567)
+.||+||++...+.... .....+++|.|++++ +++|+|++++++++.| +.|||+++|+.++.||++
T Consensus 298 ~~YG~TE~~~~~~~~~~-----------~~~~~~~~G~p~~~~-~~~i~d~~~g~~~~~g--~~GEl~v~g~~v~~GY~~ 363 (503)
T 4fuq_A 298 ERYGMTETNMNTSNPYD-----------GDRVPGAVGPALPGV-SARVTDPETGKELPRG--DIGMIEVKGPNVFKGYWR 363 (503)
T ss_dssp ECCEETTTEECBCCCSS-----------SCCCTTEEEEBCTTC-EEEEECTTTCCBCCTT--CCEEEEEESTTSCCCBTT
T ss_pred ceEcccccCcccccCCC-----------CCCcCCccccCCCCe-EEEEEECCCCCCCcCC--CceEEEEECCchhhhhcC
Confidence 99999999765432211 112346789999999 8999998889999999 889999999999999999
Q ss_pred CCccchhccc-CCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeecCCCCCcceE
Q 008389 419 NPKANEETFA-NGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCA 497 (567)
Q Consensus 419 ~~~~~~~~~~-~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~ 497 (567)
+++.+...|. +|||+|||+|++++||++++.||.||+||++|++|+|.|||++|.++|+|.+++|++.+++..|+.+++
T Consensus 364 ~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a 443 (503)
T 4fuq_A 364 MPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTA 443 (503)
T ss_dssp CHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEE
T ss_pred ChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEE
Confidence 9999999995 899999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred EEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHHHHc
Q 008389 498 FVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKEM 559 (567)
Q Consensus 498 ~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~ 559 (567)
+|+..++. ..+. .+++++++++|+.|++|..+++++ ||+|++||++|++|++++.+.
T Consensus 444 ~v~~~~~~-~~~~----~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~ 501 (503)
T 4fuq_A 444 VVVRDKGA-TIDE----AQVLHGLDGQLAKFKMPKKVIFVDDLPRNTMGKVQKNVLRETYKDI 501 (503)
T ss_dssp EEEECTTC-CCCH----HHHHHHHBTTBCGGGCCSEEEEESCCCBCTTSCBCHHHHHHHTTTT
T ss_pred EEEeCCCC-CCCH----HHHHHHHHhhcccCCCCCEEEEECCCCCCcccceeHHHHHHHHHHh
Confidence 99988776 4455 688999999999999999999888 999999999999999998654
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-80 Score=647.12 Aligned_cols=501 Identities=28% Similarity=0.423 Sum_probs=336.5
Q ss_pred hhcccCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCC
Q 008389 16 NYMALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGA 95 (567)
Q Consensus 16 ~~~~~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~ 95 (567)
.++++|+.++|+++++++||++|+++.++++||+||.++++++|+.|++.|+++||+|+++++|++++++++|||+++|+
T Consensus 2 s~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga 81 (509)
T 3ivr_A 2 SLHDFTLADVYRRNAALFPDRTAFMVDGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGA 81 (509)
T ss_dssp CTTCCCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTC
T ss_pred CCCcCCHHHHHHHHHHHCCCceEEEECCcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHH
Q 008389 96 VLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEY 175 (567)
Q Consensus 96 ~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 175 (567)
+++|+++.++.+++.++++.++++++|++.+....+......+. ....++.++..... +
T Consensus 82 ~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~--------------~ 140 (509)
T 3ivr_A 82 ILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLG-------GVKKAYAIGDGSGP--------------F 140 (509)
T ss_dssp EEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCS-------SCCEEEESSCCCSS--------------C
T ss_pred EEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccC-------CceEEEEcCCCCcC--------------h
Confidence 99999999999999999999999999999987766444322221 34455555432111 1
Q ss_pred HHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhhHHHH
Q 008389 176 EKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTW 255 (567)
Q Consensus 176 ~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~ 255 (567)
.++...............++++++|+|||||||.||+|.++|+++.+.+......++++++|++++.+|++|.+|+...+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~ 220 (509)
T 3ivr_A 141 APFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLML 220 (509)
T ss_dssp EEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHH
T ss_pred hhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHH
Confidence 11122111111222345778999999999999999999999999999999988899999999999999999999999888
Q ss_pred HHhhhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHHHh-c-
Q 008389 256 SLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQ-K- 333 (567)
Q Consensus 256 ~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~-~- 333 (567)
..++.+++.++...+++..+++.|+++++|++.++|+++..+++.... .. ++++|.++.+|++ +..+.+.+ +
T Consensus 221 ~~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~--~~-l~~lr~~~~~g~~---~~~~~~~~~~~ 294 (509)
T 3ivr_A 221 TLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAAP--AQ-LASLRAVTGLDTP---ETIERFEATCP 294 (509)
T ss_dssp HHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCCG--GG-GTTCCEEEEECCH---HHHHHHHHHCT
T ss_pred HHHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcccc--cc-hhhhheecccCCh---HHHHHHHHhcC
Confidence 888889988888889999999999999999999999999999987622 22 7889999999987 66777764 4
Q ss_pred CCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEeccccc
Q 008389 334 GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVM 413 (567)
Q Consensus 334 ~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~ 413 (567)
++++++.||+||++++++.+... .....+|.|++++ +++|+|++ +++++.| +.|||+++|+.++
T Consensus 295 ~~~~~~~YG~TE~~~~~~~~~~~------------~~~~~~G~p~~~~-~~~i~d~~-~~~~~~g--~~GEl~v~g~~~~ 358 (509)
T 3ivr_A 295 NATFWATFGQSETSGLSTFAPYR------------DRPKSAGRPLFWR-TVAVVDAE-DRPLPPG--EVGEIVLRGPTVF 358 (509)
T ss_dssp TCEEEEEEEEGGGTEEEEEEEGG------------GSTTSCCEECTTC-EEEEECTT-SCBCCTT--CCEEEEEESTTSC
T ss_pred CCeEEcccCccccccccccCccc------------cCCCcccccCCCc-EEEEECCC-CCCCCCC--CceEEEEecCCcc
Confidence 89999999999998776654321 1123489999999 89999987 9999998 8899999999999
Q ss_pred ccccCCCccchhcccCCccccCceEEEeCCCcEEEeccc--cceeeeCceecchHHHHHHHhcCCCceeeEEEEeecCCC
Q 008389 414 KGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRS--KDIIISGGENISSVEVENMMYLHPAVLEASVVARADERW 491 (567)
Q Consensus 414 ~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~--~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~ 491 (567)
.||+++++.+...|.+|||+|||+|++++||++++.||. +|+||++|++|+|.+||++|.++|+|.+++|++.+++..
T Consensus 359 ~gY~~~~~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~ 438 (509)
T 3ivr_A 359 KGYWNNAAATQHAFRNGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQW 438 (509)
T ss_dssp CEETTCHHHHHHHTGGGSEEEEEEEEECTTSCEEEEEEC-----------------------------------------
T ss_pred ccccCCHHHhHHHhhcCCcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEEEEecccccc
Confidence 999999999999999999999999999999999999999 999999999999999999999999999999999999988
Q ss_pred CCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHHHHcCCccc
Q 008389 492 GESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKEMGPVRK 564 (567)
Q Consensus 492 g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~~~~~ 564 (567)
|+.+++++++.++. ..+. ++++++++++|+.|++|+.+++++ ||+|++||++|++||+++.+.....+
T Consensus 439 ~~~~~a~v~~~~~~-~~~~----~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidr~~Lr~~~~~~~~~~~ 507 (509)
T 3ivr_A 439 SEAIKAVCVCKPGE-SIAA----DALAEFVASLIARYKKPKHVVFVEALPKDAKGAIDRAAVKTAHGQEGHHHH 507 (509)
T ss_dssp --------------------------------------------------------------------------
T ss_pred CcEEEEEEEeCCCC-CCCH----HHHHHHHHhhCcccCCCcEEEEecCCCCCCCCCccHHHHHHHHhhcccccC
Confidence 99999999988765 4444 688999999999999999999888 99999999999999999988765544
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-79 Score=645.25 Aligned_cols=504 Identities=20% Similarity=0.333 Sum_probs=340.0
Q ss_pred hcccCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCe
Q 008389 17 YMALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAV 96 (567)
Q Consensus 17 ~~~~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~ 96 (567)
|.+.|+.++|+++++++|+++|+++.++++||+||+++++++|+.|++.|+++||+|+++++|++++++++|||+++|++
T Consensus 27 ~~~~tl~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~Gav 106 (544)
T 3o83_A 27 WIDQPLTRILTVGVQSHPHSLAIICGERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVV 106 (544)
T ss_dssp CCCCCTTHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHTCE
T ss_pred CCCCCHHHHHHHHHHhCCCceEEEcCCCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHhCcE
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccCChHHHHHHHhccCceEEEEcccch-----HHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCC
Q 008389 97 LNAVNIRLNAPTIAFLLGHSASAVIMVDQEYF-----KLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRG 171 (567)
Q Consensus 97 ~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 171 (567)
++|+++.++.+++.++++.++++++|++.... ........... ....++.++....
T Consensus 107 ~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~------------ 167 (544)
T 3o83_A 107 VLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNL-------SPEIILMLNHQAT------------ 167 (544)
T ss_dssp EEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTC-------CCSEEEEETCCTT------------
T ss_pred EecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhccc-------CcceEEEecCCcc------------
Confidence 99999999999999999999999999988653 22222211111 3344554443211
Q ss_pred hHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhh
Q 008389 172 AVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGW 251 (567)
Q Consensus 172 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~ 251 (567)
...+.++............+..++++++++|||||||.||+|.++|+++.+.+......+++.++|++++.+|++|.+++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~ 247 (544)
T 3o83_A 168 DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFML 247 (544)
T ss_dssp SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHH
T ss_pred ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeec
Confidence 11233444433333222244567899999999999999999999999999999999899999999999999999999988
Q ss_pred HH--HHHHhhhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHH
Q 008389 252 CY--TWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHA 329 (567)
Q Consensus 252 ~~--~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~ 329 (567)
.. .+..+..|+++++.+.+++..+++.|+++++|++.++|+++..+++........ ++++|.+++||+++++++.++
T Consensus 248 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~i~~gG~~l~~~~~~~ 326 (544)
T 3o83_A 248 SSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQ-IQSLKLLQVGGASFPESLARQ 326 (544)
T ss_dssp HSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHH-HTTCCEEEEESSCCCHHHHTH
T ss_pred chHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhcccc-CCcceEEEEcCCCCCHHHHHH
Confidence 74 666777888888888899999999999999999999999999998876554444 889999999999999999999
Q ss_pred HHhc-CCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCcee-ccccceeEeeCCCCCccCCCCCceEEEEE
Q 008389 330 MSQK-GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRF-IGLEKLDVIDTRTQQPVPADGKTIGEIVM 407 (567)
Q Consensus 330 ~~~~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~~i~d~~~~~~~~~~~~~~Gei~v 407 (567)
+.+. ++++++.||+||++..+.... ........++|.|+ +++ +++|+|++ +++++.| +.|||++
T Consensus 327 ~~~~~~~~~~~~YG~TE~~~~~~~~~----------~~~~~~~~~~G~p~~~~~-~~~i~d~~-~~~~~~g--~~GEl~v 392 (544)
T 3o83_A 327 VPEVLNCKLQQVFGMAEGLVNYTRLD----------DSDEQIFTTQGRPISSDD-EIKIVDEQ-YREVPEG--EIGMLAT 392 (544)
T ss_dssp HHHHHCSEEEEEEECTTSCEEECCTT----------SCHHHHHHCCCEESCTTC-EEEEECTT-SCBCCTT--CCEEEEE
T ss_pred HHHHhCCcEEeeeccccccceeecCC----------CchhhccCCCceecCCCc-EEEEECCC-CCCCCCC--CeeEEEE
Confidence 9855 999999999999864333211 11223457899996 788 89999965 9999998 8899999
Q ss_pred ecccccccccCCCccchhcc-cCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEe
Q 008389 408 SGNVVMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVAR 486 (567)
Q Consensus 408 ~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~ 486 (567)
+|+.++.||+++++.+...| .+|||+|||+|++++||+++++||.||+||++|++|+|.|||++|.++|+|.+++|++.
T Consensus 393 ~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~ 472 (544)
T 3o83_A 393 RGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAI 472 (544)
T ss_dssp ECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEEEEEEC---------------------------------
T ss_pred ecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEEEEec
Confidence 99999999999999999999 68999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHh-cCCCCCCCceeecCc-ccCCCCccccHHHHHHHHHHcC
Q 008389 487 ADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRA-KMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKEMG 560 (567)
Q Consensus 487 ~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~ 560 (567)
+++..|+.++++|+..+. ..+. .++++++++ +|+.|++|..+.+++ ||+|++||++|++|++++.+..
T Consensus 473 ~~~~~g~~~~a~vv~~~~--~~~~----~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~ 542 (544)
T 3o83_A 473 VDEQFGEKSCAFIVSRNP--ELKA----VVLRRHLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILNTST 542 (544)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred cCCCCCceEEEEEEeCCC--CCCH----HHHHHHHHhCCCCcccCCcEEEEeccCCCCCCCCCcHHHHHHHHhhcc
Confidence 999989999999997663 3333 677888888 799999999999888 9999999999999999987653
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-78 Score=630.86 Aligned_cols=499 Identities=18% Similarity=0.225 Sum_probs=423.3
Q ss_pred cCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCeeee
Q 008389 20 LTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNA 99 (567)
Q Consensus 20 ~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~ 99 (567)
||+.++|+++++++||++|+++.++++||+||+++++++|+.|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~vp 80 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWRDAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIP 80 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCEEE
T ss_pred CcHHHHHHHHHHHCCCceEEEeCCceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEe
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHHHHHH
Q 008389 100 VNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFL 179 (567)
Q Consensus 100 i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l 179 (567)
+++.++.+++.++++.+++++++++...... .....+ +.. ..+.++.
T Consensus 81 l~~~~~~~~l~~il~~~~~~~~i~~~~~~~~----------------~~~~~~-~~~----------------~~~~~~~ 127 (512)
T 3fce_A 81 VDLSIPADRVQRIAENSGAKLLLSATAVTVT----------------DLPVRI-VSE----------------DNLKDIF 127 (512)
T ss_dssp EETTSCHHHHHHHHHHSCCCEEEESSCCCSS----------------CCSSEE-EET----------------HHHHHHH
T ss_pred eCCCCcHHHHHHHHHhcCCCEEEecCccccc----------------ccccce-ech----------------hhhhhhc
Confidence 9999999999999999999999997543110 111111 100 1122222
Q ss_pred hcC-CCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhhHHHHHHh
Q 008389 180 QTG-DPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLA 258 (567)
Q Consensus 180 ~~~-~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~ 258 (567)
... .....+.....++++++++|||||||.||+|.++|+++.+.+......++++++|++++.+|++|..++...+.++
T Consensus 128 ~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l 207 (512)
T 3fce_A 128 FTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSL 207 (512)
T ss_dssp HHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHHHHHHH
T ss_pred ccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHHHHHHH
Confidence 211 1112222345678999999999999999999999999999999888899999999999999999999998888888
Q ss_pred hhcCeeEEecc---CCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHHHhc--
Q 008389 259 ALCGTSICLRQ---VTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQK-- 333 (567)
Q Consensus 259 ~~g~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~-- 333 (567)
+.|+++++.+. +++..+++.++++++|++.++|+++..++......... ++++|.+++||+++++++.+++.+.
T Consensus 208 ~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~~~~~G~~l~~~~~~~~~~~~~ 286 (512)
T 3fce_A 208 VTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESM-LPNMKTFLFCGEVLPNEVARKLIERFP 286 (512)
T ss_dssp HTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTT-STTCCEEEECSSCCCHHHHHHHHHHCT
T ss_pred hCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchh-CccccEEEEecCcCCHHHHHHHHHHCC
Confidence 89999888865 68999999999999999999999999998876655555 8899999999999999999999854
Q ss_pred CCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEeccccc
Q 008389 334 GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVM 413 (567)
Q Consensus 334 ~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~ 413 (567)
++++++.||+||+++.++...... ..........+|.|.+++ ++.|+|++ |++++.| +.|||+++|+.++
T Consensus 287 ~~~i~~~YG~TE~~~~~~~~~~~~------~~~~~~~~~~~G~~~~~~-~~~i~d~~-g~~~~~g--~~GEl~v~g~~v~ 356 (512)
T 3fce_A 287 KATIMNTYGPTEATVAVTGIHVTE------EVLDQYKSLPVGYCKSDC-RLLIMKED-GTIAPDG--EKGEIVIVGPSVS 356 (512)
T ss_dssp TCEEEEEECCGGGSSCSEEEECCH------HHHHHCSSCCCEEECTTC-EEEEECSS-SCBCCTT--SCEEEEEESTTSC
T ss_pred CCEEEeCcccChhhhheeeEEecc------ccccccCCCccccccCCc-EEEEECCC-CCCCCCC--CeEEEEEeccccC
Confidence 889999999999987766543211 111223446789999999 89999976 9999998 7899999999999
Q ss_pred ccccCCCccchhccc----CCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeecC
Q 008389 414 KGYLKNPKANEETFA----NGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADE 489 (567)
Q Consensus 414 ~gy~~~~~~~~~~~~----~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~ 489 (567)
.|||++++.+...|. +|||+|||+|++ +||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++
T Consensus 357 ~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~ 435 (512)
T 3fce_A 357 VGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKG 435 (512)
T ss_dssp SCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEEET
T ss_pred hhhcCCchhhhhccccCCCCEEEeCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEecC
Confidence 999999999999883 569999999999 699999999999999999999999999999999999999999999998
Q ss_pred CCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHHHHcCCccc
Q 008389 490 RWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKEMGPVRK 564 (567)
Q Consensus 490 ~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~~~~~ 564 (567)
..++.++++|++.++. ..+...+.++++++++++|+.|++|..+.+++ ||+|++||++|++|++.+.+...+..
T Consensus 436 ~~~~~~~a~vv~~~~~-~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~~~~lP~t~~GKi~R~~L~~~~~~~~~~~~ 510 (512)
T 3fce_A 436 EKYDYLLAVVVPGEHS-FEKEFKLTSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSEVTALEHHHH 510 (512)
T ss_dssp TEEEEEEEEEEECSCC-CSSHHHHHHHHHHHHHTTSCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHC------
T ss_pred CCceEEEEEEecCCcc-ccchhhhHHHHHHHHHhhCchhcCCeEEEEecccCCCCCcChHHHHHHhhhhhcccccc
Confidence 8889999999988765 33444556789999999999999999999888 99999999999999999988765543
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-78 Score=631.03 Aligned_cols=500 Identities=21% Similarity=0.269 Sum_probs=431.2
Q ss_pred cCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHc-cCCCCCEEEEEcCChHHHHHHHHhhhhcCCeee
Q 008389 20 LTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKR-SIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLN 98 (567)
Q Consensus 20 ~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~-g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v 98 (567)
||+.++|+++++++|+++|+++.++++||+||.++++++|..|.+. |.++|++|+++++|++++++++|||+++|++++
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 80 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQGQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYI 80 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCCEE
T ss_pred CcHHHHHHHHHHHCCCCeEEEcCCceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCEEE
Confidence 6899999999999999999999999999999999999999999875 888999999999999999999999999999999
Q ss_pred eccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHHHHH
Q 008389 99 AVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKF 178 (567)
Q Consensus 99 ~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (567)
|+++.++.+++.++++.++++++|++...... ... .......+.++
T Consensus 81 pl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~----------------~~~------------------~~~~~~~~~~~ 126 (511)
T 3e7w_A 81 PVDLSIPSERIAKIIESSGAELLIHAAGLSID----------------AVG------------------QQIQTVSAEEL 126 (511)
T ss_dssp EEETTSCHHHHHHHHHHHTCCEEEESSSCCTT----------------CCC------------------CSSCEEEHHHH
T ss_pred ecCCCChHHHHHHHHHhCCCCEEEecccccch----------------hcc------------------cccceecHhhh
Confidence 99999999999999999999999997653210 000 00111233444
Q ss_pred HhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhhHHHHHHh
Q 008389 179 LQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLA 258 (567)
Q Consensus 179 l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~ 258 (567)
+..............++++++|+|||||||.||+|.+||+++.+.+......++++++|++++.+|++|..++...+.++
T Consensus 127 ~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l 206 (511)
T 3e7w_A 127 LENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYPCL 206 (511)
T ss_dssp HTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHHHHHHH
T ss_pred hccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHHHHHHH
Confidence 44333322223345678999999999999999999999999999999888889999999999999999999988888888
Q ss_pred hhcCeeEEecc---CCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHHHhc--
Q 008389 259 ALCGTSICLRQ---VTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQK-- 333 (567)
Q Consensus 259 ~~g~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~-- 333 (567)
..|+++++... +++..+++.++++++|++.++|+++..++......... ++++|.+++||+++++++.+.+.+.
T Consensus 207 ~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~l~~~~~~G~~l~~~~~~~~~~~~~ 285 (511)
T 3e7w_A 207 QSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDL-LPHADTFMFCGEVLPVSVAKALLERFP 285 (511)
T ss_dssp HTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTT-CTTCCEEEECSSCCCHHHHHHHHHHCT
T ss_pred hcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccccc-CCcccEEEEecCCCCHHHHHHHHHHCC
Confidence 88998888765 68999999999999999999999999999876655555 8899999999999999999999864
Q ss_pred CCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEeccccc
Q 008389 334 GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVM 413 (567)
Q Consensus 334 ~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~ 413 (567)
++++++.||+||+++.++.+..... .........+|.|++++ +++|+|++ |++++.| +.|||+++|+.++
T Consensus 286 ~~~i~~~YG~TE~~~~~~~~~~~~~------~~~~~~~~~~G~~~~~~-~~~i~d~~-g~~~~~g--~~GEl~v~g~~v~ 355 (511)
T 3e7w_A 286 KAKIFNTYGPTEATVAVTSVEITND------VISRSESLPVGFAKPDM-NIFIMDEE-GQPLPEG--EKGEIVIAGPSVS 355 (511)
T ss_dssp TCEEEECCCCGGGSSCSEEEEECHH------HHTTCSSCCCBEECTTC-EEEEECTT-SCBCCTT--CCEEEEEESTTSC
T ss_pred CcEEEeCcccchheeeeeEEecccc------ccccCCcCCCcceeCCC-EEEEECCC-CCCCCCC--CceEEEEecCccC
Confidence 8999999999999877765432211 11112335689999999 89999987 9999998 8899999999999
Q ss_pred ccccCCCccchhcc--cCC--ccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeecC
Q 008389 414 KGYLKNPKANEETF--ANG--WYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADE 489 (567)
Q Consensus 414 ~gy~~~~~~~~~~~--~~g--~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~ 489 (567)
.||+++++.+...| .+| ||+|||+|+++ ||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++
T Consensus 356 ~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~~-dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~ 434 (511)
T 3e7w_A 356 RGYLGEPELTEKAFFSHEGQWAYRTGDAGFIQ-DGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPN 434 (511)
T ss_dssp CCBTTCHHHHHHHEEESSSSEEEEEEEEEEEE-TTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEECSS
T ss_pred hhhCCCcccchhhhcCCCCCEEEeCCCeEEcc-CCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEcCC
Confidence 99999999999988 344 79999999994 99999999999999999999999999999999999999999999988
Q ss_pred CCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHHHHcCCccccC
Q 008389 490 RWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKEMGPVRKSK 566 (567)
Q Consensus 490 ~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~~~~~~~ 566 (567)
..++.+++++++.++. ..+..++.++++++++++|+.|++|..+++++ ||+|++||++|++|+++++....++.++
T Consensus 435 ~~~~~~~a~vv~~~~~-~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~v~~lP~t~~GKi~R~~L~~~~~~~~~~~~~~ 511 (511)
T 3e7w_A 435 GTVEYLIAAIVPEEHE-FEKEFQLTSAIKKELAASLPAYMIPRKFIYQDHIQMTANGKIDRKRIGEEVLVRSHHHHHH 511 (511)
T ss_dssp SSCCEEEEEEEECCCC-CSSHHHHHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHHHHHTCC---
T ss_pred CCceEEEEEEEecccc-ccchhhHHHHHHHHHHhhCchhhCCeeEEEeccCCCCCCcCccHHHHHhHHhhhcccccCC
Confidence 8889999999988775 33444566889999999999999999999888 9999999999999999999887776553
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-77 Score=623.13 Aligned_cols=483 Identities=26% Similarity=0.371 Sum_probs=409.8
Q ss_pred cCHHHHHhhhhhcCCCceeEEEC--CccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCee
Q 008389 20 LTPLWFLDRAATVHPTRTSVVHG--STRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVL 97 (567)
Q Consensus 20 ~t~~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~ 97 (567)
+|+.++|+++++++||++|+.+. ++++||+||++++.++|+.|++.|+++||+|+++++|++++++++|||+++|+++
T Consensus 2 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~ 81 (504)
T 1t5h_X 2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVP 81 (504)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEETTTTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEE
T ss_pred CcHHHHHHHHHHhCCCceEEEEcCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcEE
Confidence 47999999999999999999998 7899999999999999999999999999999999999999999999999999999
Q ss_pred eeccccCChHHHHHHHhccCceEEEE--cccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHH
Q 008389 98 NAVNIRLNAPTIAFLLGHSASAVIMV--DQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEY 175 (567)
Q Consensus 98 v~i~~~~~~~~l~~~l~~~~~~~vi~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 175 (567)
+|+++.++.+++.++++.++++++++ +.+..+.+. .... . ..++.+++
T Consensus 82 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~---~~~~-------~-~~~~~~~~------------------- 131 (504)
T 1t5h_X 82 ALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIF---QSGS-------G-ARIIFLGD------------------- 131 (504)
T ss_dssp EEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHH---HHCC-------C-CEEEEGGG-------------------
T ss_pred EecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhh---hccc-------c-ceeEEecc-------------------
Confidence 99999999999999999999999999 665433321 1111 1 11222211
Q ss_pred HHHHhcC----CCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhcc--CCCcEEEEecCccchh
Q 008389 176 EKFLQTG----DPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGM--NEGAVYLWTLPMFHCN 249 (567)
Q Consensus 176 ~~~l~~~----~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~--~~~d~~~~~~p~~~~~ 249 (567)
++... ...........++++++++|||||||.||+|.++|+++.+.+......+++ ++++++++.+|++|.+
T Consensus 132 --~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~ 209 (504)
T 1t5h_X 132 --LVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVV 209 (504)
T ss_dssp --TEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHH
T ss_pred --hhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcc
Confidence 11110 000111123467899999999999999999999999999988888777888 8899999999999999
Q ss_pred hhH-HHHHHhhhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCC--CCcCCCCchhhhhccCCCCCHHH
Q 008389 250 GWC-YTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSE--DTILPLPHVVHVNTAGAAPPPSV 326 (567)
Q Consensus 250 g~~-~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~--~~~~~l~~lr~i~~~G~~l~~~~ 326 (567)
|+. ..+.++..|+++++.+.+++..+++.|+++++|+++++|+++..|++.... .... ++++|.+++||+++++++
T Consensus 210 g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~-l~~lr~~~~gG~~l~~~~ 288 (504)
T 1t5h_X 210 GFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLK-LDSLRHVTFAGATMPDAV 288 (504)
T ss_dssp HHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCC-CTTCCEEEECCTTCCHHH
T ss_pred hHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhcccccccc-CccccEEEEcCCcCCHHH
Confidence 984 566677788888888889999999999999999999999999999876422 2223 889999999999999999
Q ss_pred HHHHHhc-CCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCC--CccCCCCCceE
Q 008389 327 LHAMSQK-GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQ--QPVPADGKTIG 403 (567)
Q Consensus 327 ~~~~~~~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~--~~~~~~~~~~G 403 (567)
.+.+.+. ++++++.||+||++. +.... ....++.|.|.+++ +++|+|.+.+ ++++.| +.|
T Consensus 289 ~~~~~~~~~~~~~~~YG~TE~~~-~~~~~-------------~~~~~~~g~p~~~~-~~~i~~~~~~~~~~~~~g--~~G 351 (504)
T 1t5h_X 289 LETVHQHLPGEKVNIYGTTEAMN-SLYMR-------------QPKTGTEMAPGFFS-EVRIVRIGGGVDEIVANG--EEG 351 (504)
T ss_dssp HHHHHHHCCSEEEEEEEETTTEE-EEEEE-------------SCSSSSEEBCCTTC-CEEEECTTSCTTCBCCTT--CCE
T ss_pred HHHHHHhcCcceeeeeccccccc-ccccc-------------CCCCCccccCCCCC-ceeEEeccCCCCCcCCCC--Ccc
Confidence 9999854 899999999999832 22111 01236789999999 8999997632 888888 789
Q ss_pred EEEEe-cccccccccCCCccchhcccCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeE
Q 008389 404 EIVMS-GNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEAS 482 (567)
Q Consensus 404 ei~v~-~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~ 482 (567)
||+++ |+.++.||+++++.+.+.|.+|||+|||+|++++||++++.||.||+||++|++|+|.+||++|.++|+|.+++
T Consensus 352 El~v~gg~~~~~GY~~~~~~t~~~f~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~ 431 (504)
T 1t5h_X 352 ELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVV 431 (504)
T ss_dssp EEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEEEEE
T ss_pred eEEEeCCceeeceecCCchhhhhhhcCCccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcceEE
Confidence 99999 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHh-cCCCCCCCceeecCc-ccCCCCccccHHHHHHHHH
Q 008389 483 VVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRA-KMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAK 557 (567)
Q Consensus 483 v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~ 557 (567)
|++.+++..|+.++++|+++++. ..+. +++++++++ +|+.|++|+.+++++ ||+|++||++|++|++++.
T Consensus 432 Vv~~~~~~~g~~~~a~vv~~~~~-~~~~----~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 432 VIGLADQRWGQSVTACVVPRLGE-TLSA----DALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQVS 503 (504)
T ss_dssp EEEEECSSSSEEEEEEEEECTTC-CCCH----HHHHHHHHTSSCCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHC
T ss_pred EEEeecCCCCcEEEEEEEecCCc-CcCH----HHHHHHHhhccCcccccceEEEEhhhCCCCCCCCEeHHHHHHHhc
Confidence 99999998899999999998765 3444 678899998 999999999999888 9999999999999999864
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-77 Score=639.34 Aligned_cols=513 Identities=20% Similarity=0.281 Sum_probs=426.3
Q ss_pred CHHHHHhhhhhcCCCceeEEE------CCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcC
Q 008389 21 TPLWFLDRAATVHPTRTSVVH------GSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAG 94 (567)
Q Consensus 21 t~~~~l~~~a~~~p~~~a~~~------~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G 94 (567)
++.++|+++++++||++|+++ ..+++||+||++++.++|+.|+++|+++||+|+++++|++++++++|||+++|
T Consensus 77 ~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G 156 (652)
T 1pg4_A 77 LAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIG 156 (652)
T ss_dssp HHHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCCCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcC
Confidence 357899999999999999998 23789999999999999999999999999999999999999999999999999
Q ss_pred CeeeeccccCChHHHHHHHhccCceEEEEcccch---------HHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccch
Q 008389 95 AVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYF---------KLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLK 165 (567)
Q Consensus 95 ~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 165 (567)
++++|+++.++.+++.+++++++++++|+++... +.+.+...... ......++.++.......
T Consensus 157 av~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~vi~~~~~~~~~~--- 228 (652)
T 1pg4_A 157 AVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPN-----VTSVEHVIVLKRTGSDID--- 228 (652)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTT-----CCSCCEEEEECSSCCCCC---
T ss_pred cEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCC-----cCCCCEEEEEeCCCCccc---
Confidence 9999999999999999999999999999987643 22222221110 002345666654321100
Q ss_pred hccCCChHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHH-HHHHHhccCCCcEEEEecC
Q 008389 166 YALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSL-SVALIWGMNEGAVYLWTLP 244 (567)
Q Consensus 166 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~-~~~~~~~~~~~d~~~~~~p 244 (567)
........|++++....... ...+..++++++|+|||||||.||||+++|++++.... .....++++++|++++..|
T Consensus 229 -~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~ 306 (652)
T 1pg4_A 229 -WQEGRDLWWRDLIEKASPEH-QPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTAD 306 (652)
T ss_dssp -CCBTTEEEHHHHHTTSCSCC-CCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSC
T ss_pred -ccCCCceeHHHHHhhcCCCC-CccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccC
Confidence 00112345777776443221 22334678999999999999999999999999887664 3445688999999999999
Q ss_pred ccchhhhH-HHHHHhhhcCeeEEecc----CCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCC--CCcCCCCchhhhhc
Q 008389 245 MFHCNGWC-YTWSLAALCGTSICLRQ----VTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSE--DTILPLPHVVHVNT 317 (567)
Q Consensus 245 ~~~~~g~~-~~~~~~~~g~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~--~~~~~l~~lr~i~~ 317 (567)
++|..|+. ..+.+++.|+++++... +++..+++.|+++++|+++++|++++.|++.... ...+ +++||.+++
T Consensus 307 ~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~-l~sLr~i~~ 385 (652)
T 1pg4_A 307 VGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTD-RSSLRILGS 385 (652)
T ss_dssp TTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCC-CTTCCEEEE
T ss_pred CeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCC-cCceEEEEE
Confidence 99999984 45567778888888754 5899999999999999999999999999987542 2233 899999999
Q ss_pred cCCCCCHHHHHHHHh-cC---CeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCC
Q 008389 318 AGAAPPPSVLHAMSQ-KG---FHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQ 393 (567)
Q Consensus 318 ~G~~l~~~~~~~~~~-~~---~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~ 393 (567)
|||++++++.+++.+ ++ +++++.||+||+++.++...... .....+++|.|++++ +++|+|++ |+
T Consensus 386 gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~---------~~~~~~s~G~p~~g~-~v~i~d~~-g~ 454 (652)
T 1pg4_A 386 VGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGA---------IELKAGSATRPFFGV-QPALVDNE-GH 454 (652)
T ss_dssp ESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTT---------CCBCTTCCBSBCTTC-CEEEECTT-CC
T ss_pred ecCCCCHHHHHHHHHHhCCCCCcEEccccCcccccceecCCCCC---------cCccCCccccCcCCC-eEEEECCC-CC
Confidence 999999999999985 46 89999999999987665432110 112347899999999 89999987 99
Q ss_pred ccCCCCCceEEEEEec--ccccccccCCCccchhcc---cCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHH
Q 008389 394 PVPADGKTIGEIVMSG--NVVMKGYLKNPKANEETF---ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEV 468 (567)
Q Consensus 394 ~~~~~~~~~Gei~v~~--~~~~~gy~~~~~~~~~~~---~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~i 468 (567)
+++.| +.|||+|+| |.++.|||++++.+...| .+|||+|||+|++++||+++++||+||+||++|++|+|.||
T Consensus 455 ~v~~g--~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eI 532 (652)
T 1pg4_A 455 PQEGA--TEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEI 532 (652)
T ss_dssp BCCSS--EEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHH
T ss_pred CcCCC--ceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHH
Confidence 99887 899999999 789999999998887765 37999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCceeeEEEEeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccc
Q 008389 469 ENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKI 547 (567)
Q Consensus 469 E~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi 547 (567)
|++|.++|+|.+++|++.+++..|+.++++|+++++.. .+ +++.++|+++++++|+.|++|..|++++ ||+|++||+
T Consensus 533 E~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~-~~-~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~T~sGKi 610 (652)
T 1pg4_A 533 ESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEE-PS-PELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKI 610 (652)
T ss_dssp HHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC-CC-HHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCB
T ss_pred HHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCCC-CC-HHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCCccc
Confidence 99999999999999999999888999999999987752 21 2345789999999999999999999888 999999999
Q ss_pred cHHHHHHHHHHc
Q 008389 548 QKHVLRAKAKEM 559 (567)
Q Consensus 548 ~r~~l~~~~~~~ 559 (567)
+|++|++++.+.
T Consensus 611 ~R~~L~~~~~~~ 622 (652)
T 1pg4_A 611 MRRILRKIAAGD 622 (652)
T ss_dssp CHHHHHHHHHTC
T ss_pred hHHHHHHHHhCC
Confidence 999999998865
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-77 Score=628.08 Aligned_cols=503 Identities=22% Similarity=0.332 Sum_probs=423.5
Q ss_pred cC-HHHHHhhhhhc-----CCCceeEEEC-----CccccHHHHHHHHHHHHHHHHHc-cCCCCCEEEEEcCChHHHHHHH
Q 008389 20 LT-PLWFLDRAATV-----HPTRTSVVHG-----STRYTWLQTYQRCRRLASALCKR-SIGLGCTVAIIAPNIPAIYEAH 87 (567)
Q Consensus 20 ~t-~~~~l~~~a~~-----~p~~~a~~~~-----~~~~Ty~el~~~~~~lA~~L~~~-g~~~gd~V~l~~~~~~~~~~~~ 87 (567)
++ +.++|++++++ +||++|+++. ++++||+||.++++++|+.|.+. |+++||+|+++++|++++++++
T Consensus 37 ~~~~~~~l~~~a~~~~a~~~p~~~al~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~~~~~ 116 (570)
T 3c5e_A 37 FNFASDVLDHWADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVI 116 (570)
T ss_dssp CCHHHHTHHHHHHHHHTTSSCCCEEEEEECSSSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHHHHHH
T ss_pred ccHHHHHHHHHHhhccccCCCCceEEEEEcCCCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHHHHHH
Confidence 44 46899999998 9999999983 37899999999999999999998 9999999999999999999999
Q ss_pred HhhhhcCCeeeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhc
Q 008389 88 FGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYA 167 (567)
Q Consensus 88 lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 167 (567)
|||+++|++++|+++.++.+++.++++.++++++|++.+..+.+......++ ....++.++....
T Consensus 117 lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~-------- 181 (570)
T 3c5e_A 117 LGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECP-------SLRIKLLVSEKSC-------- 181 (570)
T ss_dssp HHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCT-------TCCEEEEESSSCC--------
T ss_pred HHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCC-------ceeEEEEecccCc--------
Confidence 9999999999999999999999999999999999999887665544322222 3344555543211
Q ss_pred cCCChHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHH--HHHHHHHHhccCCCcEEEEecCc
Q 008389 168 LGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYL--MSLSVALIWGMNEGAVYLWTLPM 245 (567)
Q Consensus 168 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~--~~~~~~~~~~~~~~d~~~~~~p~ 245 (567)
.+...+++++........ .....++++++|+|||||||.||+|.++|+ ++. ..... ..++++++|++++..|+
T Consensus 182 --~~~~~~~~~~~~~~~~~~-~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~~~~~d~~~~~~p~ 256 (570)
T 3c5e_A 182 --DGWLNFKKLLNEASTTHH-CVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTGLQASDIMWTISDT 256 (570)
T ss_dssp --TTSEEHHHHHHHSCSCCC-CCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTSCCTTCEEEECCCT
T ss_pred --cccccHHHHhhccccccc-ccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcCCCCCceEEEcCch
Confidence 122346666654433221 123567899999999999999999999999 444 33333 56788999999999999
Q ss_pred cchhhhH-HHHHHhhhcCeeEEec--cCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCC
Q 008389 246 FHCNGWC-YTWSLAALCGTSICLR--QVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAP 322 (567)
Q Consensus 246 ~~~~g~~-~~~~~~~~g~~~~~~~--~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l 322 (567)
+|..++. ..+.++..|+++++.. .+++..+++.|+++++|++.++|+++..+.+... .... ++++|.+++||+++
T Consensus 257 ~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-~~~~-~~~lr~i~~gGe~l 334 (570)
T 3c5e_A 257 GWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDL-SSYK-FPHLQNCVTVGESL 334 (570)
T ss_dssp TSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSCT-TTCC-CTTCCEEEEESSCC
T ss_pred HHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhccc-cccc-cccceEEEEcCCcC
Confidence 9999987 4556677788888775 6899999999999999999999999999998632 2223 78999999999999
Q ss_pred CHHHHHHHHh-cCCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCc
Q 008389 323 PPSVLHAMSQ-KGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKT 401 (567)
Q Consensus 323 ~~~~~~~~~~-~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~ 401 (567)
++++.+.+.+ +++++++.||+||++..++..... ....+++|.|++++ +++|+|++ |++++.| +
T Consensus 335 ~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~-----------~~~~~~vG~p~~~~-~v~i~d~~-g~~~~~G--~ 399 (570)
T 3c5e_A 335 LPETLENWRAQTGLDIRESYGQTETGLTCMVSKTM-----------KIKPGYMGTAASCY-DVQIIDDK-GNVLPPG--T 399 (570)
T ss_dssp CHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTS-----------CCCTTCCCEECTTC-CEEEECTT-SCBCCTT--C
T ss_pred CHHHHHHHHHHhCCchhhccchhhcccceecCccc-----------ccCCCcccccCCCc-eEEEECCC-CCCCCCC--C
Confidence 9999999985 599999999999997554432110 12347899999999 89999977 9999998 8
Q ss_pred eEEEEEe-----cccccccccCCCccchhcccCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCC
Q 008389 402 IGEIVMS-----GNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHP 476 (567)
Q Consensus 402 ~Gei~v~-----~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~ 476 (567)
.|||+++ |+.++.||+++++.+...|.+|||+|||+|++++||++++.||.||+||++|++|+|.+||++|.++|
T Consensus 400 ~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~~p 479 (570)
T 3c5e_A 400 EGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHP 479 (570)
T ss_dssp CEEEEEECSSBCCTTCCCEETTCHHHHHHTEETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHTST
T ss_pred CCeeEEeccCCCCchhhccccCChhHhhhhhcCCccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHHhCC
Confidence 8999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeEEEEeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHH
Q 008389 477 AVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAK 555 (567)
Q Consensus 477 ~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~ 555 (567)
+|.+++|++.+++..|+.++++|++.++......+...++|+++++++|+.|++|+.|.+++ ||+|++||++|++|++.
T Consensus 480 ~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~ 559 (570)
T 3c5e_A 480 AVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDK 559 (570)
T ss_dssp TEEEEEEEEEEETTTEEEEEEEEEECGGGTTSCHHHHHHHHHHHHHHHSCGGGSCSEEEEESCCCBCTTCCBCHHHHHHH
T ss_pred CcceEEEEeeeCCCCCeEEEEEEEECCcccCcchHHHHHHHHHHHHhhCccccCCcEEEEeccCCCCCCcCCcHHHHHHH
Confidence 99999999999988889999999987764222334455889999999999999999999888 99999999999999998
Q ss_pred HHHc
Q 008389 556 AKEM 559 (567)
Q Consensus 556 ~~~~ 559 (567)
+.+.
T Consensus 560 ~~~~ 563 (570)
T 3c5e_A 560 EWKM 563 (570)
T ss_dssp HTC-
T ss_pred HHhh
Confidence 7654
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-77 Score=637.05 Aligned_cols=516 Identities=21% Similarity=0.273 Sum_probs=422.4
Q ss_pred CHHHHHhhhhhcCCCceeEEE------CCccccHHHHHHHHHHHHHHHH-HccCCCCCEEEEEcCChHHHHHHHHhhhhc
Q 008389 21 TPLWFLDRAATVHPTRTSVVH------GSTRYTWLQTYQRCRRLASALC-KRSIGLGCTVAIIAPNIPAIYEAHFGVPMA 93 (567)
Q Consensus 21 t~~~~l~~~a~~~p~~~a~~~------~~~~~Ty~el~~~~~~lA~~L~-~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~ 93 (567)
++.++|+++++++||++|+++ ..+++||+||++++.++|+.|+ ++|+++||+|+++++|++++++++|||+++
T Consensus 83 ~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~~ 162 (663)
T 1ry2_A 83 ACYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRI 162 (663)
T ss_dssp HHHHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Confidence 467899999999999999998 2478999999999999999999 999999999999999999999999999999
Q ss_pred CCeeeeccccCChHHHHHHHhccCceEEEEcccchH---------HHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccc
Q 008389 94 GAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFK---------LAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDL 164 (567)
Q Consensus 94 G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 164 (567)
|++++|+++.++.+++.+++++++++++|+++.... .+.+....+ .....+++++........
T Consensus 163 Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~vi~~~~~~~~~~~- 234 (663)
T 1ry2_A 163 GAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRET-------PGVRHVLVYRKTNNPSVA- 234 (663)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSC-------TTCCEEEEECSSCCSSCC-
T ss_pred CCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhC-------CCCceEEEEecCCCCccc-
Confidence 999999999999999999999999999999876532 222221111 134556666543210000
Q ss_pred hhccCCChHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHH-HHHHhccCCCcEEEEec
Q 008389 165 KYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLS-VALIWGMNEGAVYLWTL 243 (567)
Q Consensus 165 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~-~~~~~~~~~~d~~~~~~ 243 (567)
........|.+++...... ....+.+++++++|+|||||||.||||+++|++++..... ....++++++|++++..
T Consensus 235 --~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~ 311 (663)
T 1ry2_A 235 --FHAPRDLDWATEKKKYKTY-YPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAG 311 (663)
T ss_dssp --CCSSSEEEHHHHHTTSCSC-CCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECS
T ss_pred --cCCCccccHHHHHhhcCCC-CCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcC
Confidence 0011234567766543322 1223456789999999999999999999999998876644 44567899999999999
Q ss_pred CccchhhhH-HHHHHhhhcCeeEEecc----CCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCC--CCcCCCCchhhhh
Q 008389 244 PMFHCNGWC-YTWSLAALCGTSICLRQ----VTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSE--DTILPLPHVVHVN 316 (567)
Q Consensus 244 p~~~~~g~~-~~~~~~~~g~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~--~~~~~l~~lr~i~ 316 (567)
|++|..|+. ..+.+++.|++++++.. +++..+++.|+++++|+++++|++++.|.+.... ...+ +++||.++
T Consensus 312 ~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~-l~sLr~i~ 390 (663)
T 1ry2_A 312 DIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHS-LKSLRCLG 390 (663)
T ss_dssp CTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCC-CTTCCEEE
T ss_pred CcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCC-cCceEEEE
Confidence 999999984 45566778888888754 5889999999999999999999999999886542 2233 89999999
Q ss_pred ccCCCCCHHHHHHHHh-cC---CeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCC
Q 008389 317 TAGAAPPPSVLHAMSQ-KG---FHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQ 392 (567)
Q Consensus 317 ~~G~~l~~~~~~~~~~-~~---~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~ 392 (567)
++||++++++.+++.+ ++ +++++.||+||+++.++...... ......+++|.|++++ +++|+|+++|
T Consensus 391 ~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~--------~~~~~~gs~G~p~~g~-~v~i~d~~~g 461 (663)
T 1ry2_A 391 SVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGG--------VTPMKPGSASFPFFGI-DAVVLDPNTG 461 (663)
T ss_dssp ECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTT--------CCCCCTTCCCEECTTC-CEEEECSSST
T ss_pred EEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCeeeccCCCC--------CcccCCCccccCcCCC-eEEEEcCCCC
Confidence 9999999999999985 46 89999999999987666542200 0112347899999999 8999998569
Q ss_pred CccCC-CCCceEEEEEec--ccccccccCCCccchhcc---cCCccccCceEEEeCCCcEEEeccccceeeeCceecchH
Q 008389 393 QPVPA-DGKTIGEIVMSG--NVVMKGYLKNPKANEETF---ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSV 466 (567)
Q Consensus 393 ~~~~~-~~~~~Gei~v~~--~~~~~gy~~~~~~~~~~~---~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~ 466 (567)
++++. | +.|||+++| |.++.|||++++.+...| .+|||+|||+|++++||+++++||+||+||++|++|++.
T Consensus 462 ~~v~~~g--~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~ 539 (663)
T 1ry2_A 462 EELNTSH--AEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTA 539 (663)
T ss_dssp TCEECSS--CEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHH
T ss_pred CcCCCCC--cceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHH
Confidence 99987 6 789999999 589999999998887776 379999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCceeeEEEEeecCCCCCcceEEEEEcCCccc--h-h--hHHHHHHHHHHHHhcCCCCCCCceeecCc-cc
Q 008389 467 EVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDK--S-N--EQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LP 540 (567)
Q Consensus 467 ~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~--~-~--~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP 540 (567)
|||++|.++|.|.+++|++.+++..|+.++++|+++++... . + .+++.++|+++++++|+.|++|..|++++ ||
T Consensus 540 eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP 619 (663)
T 1ry2_A 540 EIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLP 619 (663)
T ss_dssp HHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCC
T ss_pred HHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCCccccccchhHHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCC
Confidence 99999999999999999999998889999999999876520 1 1 11455889999999999999999999888 99
Q ss_pred CCCCccccHHHHHHHHHHc
Q 008389 541 KTATGKIQKHVLRAKAKEM 559 (567)
Q Consensus 541 ~t~~GKi~r~~l~~~~~~~ 559 (567)
+|++||++|+.|++++.+.
T Consensus 620 ~T~sGKi~R~~L~~~~~~~ 638 (663)
T 1ry2_A 620 KTRSGKIMRRILRKILAGE 638 (663)
T ss_dssp BCTTSCBCHHHHHHSCC--
T ss_pred CCCccCchHHHHHHHHcCC
Confidence 9999999999999987664
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-76 Score=621.47 Aligned_cols=479 Identities=18% Similarity=0.264 Sum_probs=407.7
Q ss_pred ccCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCeee
Q 008389 19 ALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLN 98 (567)
Q Consensus 19 ~~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v 98 (567)
..|+.++|+++++++||++|+++.++++||+||.+++.++|+.|.+.|+++||+|+++++|++++++++|||+++|++++
T Consensus 38 ~~~l~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v 117 (563)
T 1amu_A 38 DKTIHQLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYV 117 (563)
T ss_dssp TCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEE
T ss_pred CCcHHHHHHHHHHHCCCCeEEEeCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEE
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHHHHH
Q 008389 99 AVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKF 178 (567)
Q Consensus 99 ~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (567)
|+++.++.+++.++++.++++++|++.+....+.. .. ....+..+.....
T Consensus 118 pl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~----~~-------~~~~~~~~~~~~~------------------- 167 (563)
T 1amu_A 118 PIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHN----IQ-------FNGQVEIFEEDTI------------------- 167 (563)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTT----SC-------CCSEEEECCCSTT-------------------
T ss_pred EeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhh----cc-------ccCceeeecchhh-------------------
Confidence 99999999999999999999999999876443221 00 1122333222100
Q ss_pred HhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhhHHHHHHh
Q 008389 179 LQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLA 258 (567)
Q Consensus 179 l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~ 258 (567)
... .......+..++++++++|||||||.||||.+||+++.+.+......++++++|++++..|++|..++...+.++
T Consensus 168 -~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l 245 (563)
T 1amu_A 168 -KIR-EGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMAL 245 (563)
T ss_dssp -TTS-CCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHHHHH
T ss_pred -ccc-cCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHHHHHH
Confidence 000 011112235678999999999999999999999999998888888888999999999999999999988777888
Q ss_pred hhcCeeEEecc---CCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHHHhcCC
Q 008389 259 ALCGTSICLRQ---VTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQKGF 335 (567)
Q Consensus 259 ~~g~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~~~ 335 (567)
+.|+++++... .++..+++.++++++|++.++|+++..+... . ++++|.+++||+++++++.+.+.+. +
T Consensus 246 ~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------~-~~~lr~~~~gG~~l~~~~~~~~~~~-~ 317 (563)
T 1amu_A 246 LTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------R-ILSIQTLITAGSATSPSLVNKWKEK-V 317 (563)
T ss_dssp TTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT------T-CCSCSEEEEESSCCCHHHHHHHTTT-S
T ss_pred HCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc------c-cccccEEEEEEecCCHHHHHHHHhC-C
Confidence 88998888765 6899999999999999999999998877542 2 6789999999999999999999874 8
Q ss_pred eeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEeccccccc
Q 008389 336 HVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKG 415 (567)
Q Consensus 336 ~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~~g 415 (567)
++++.||+||++.+++.+...... .....++|.|++++ +++|+|++ +++++.| +.|||+++|+.++.|
T Consensus 318 ~~~~~YG~TE~~~~~~~~~~~~~~--------~~~~~~vG~p~~~~-~v~i~d~~-~~~~~~g--~~GEl~v~g~~v~~G 385 (563)
T 1amu_A 318 TYINAYGPTETTICATTWVATKET--------IGHSVPIGAPIQNT-QIYIVDEN-LQLKSVG--EAGELCIGGEGLARG 385 (563)
T ss_dssp EEEEEECCGGGSSCSEEEECCSSC--------CCSSCCCBEECTTE-EEEEECTT-SCBCCTT--CEEEEEEEETTCCCE
T ss_pred eEEEEECcCHHhHhheeeeccccc--------CCCCCcccceeCCC-EEEEECCC-cCCCCCC--CcEEEEEechhhChh
Confidence 999999999998766654322111 11236789999999 89999976 8999988 899999999999999
Q ss_pred ccCCCccchhccc-------CCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeec
Q 008389 416 YLKNPKANEETFA-------NGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARAD 488 (567)
Q Consensus 416 y~~~~~~~~~~~~-------~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~ 488 (567)
||++++.+...|. ++||+|||+|++++||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.++
T Consensus 386 Y~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~ 465 (563)
T 1amu_A 386 YWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKD 465 (563)
T ss_dssp ETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEEC
T ss_pred hCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEeec
Confidence 9999999998884 359999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHH
Q 008389 489 ERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKA 556 (567)
Q Consensus 489 ~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~ 556 (567)
+..++.++++++...+. +. ++|+++++++|+.|++|..+++++ ||+|++||++|++|++..
T Consensus 466 ~~~~~~~~a~vv~~~~~---~~----~~l~~~l~~~L~~y~~P~~i~~v~~lP~t~~GKi~r~~L~~~~ 527 (563)
T 1amu_A 466 HQEQPYLCAYFVSEKHI---PL----EQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPEPD 527 (563)
T ss_dssp TTSCEEEEEEEEESSCC---CH----HHHHHHHHHHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCCCC
T ss_pred CCCCeEEEEEEEeCCCC---CH----HHHHHHHHhhCchhhCCcEEEEecccCCCCCcChhHHhcCCcc
Confidence 88889999999876432 33 678999999999999999999888 999999999999998753
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-76 Score=614.83 Aligned_cols=498 Identities=19% Similarity=0.226 Sum_probs=410.3
Q ss_pred ccCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCeee
Q 008389 19 ALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLN 98 (567)
Q Consensus 19 ~~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v 98 (567)
..|+.++|+++++++|+++|+.+.++++||+||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|++++
T Consensus 3 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~v 82 (521)
T 3l8c_A 3 LKDMIDSIEQFAQTQADFPVYDCLGERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAYI 82 (521)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHHCCCCcceecCCCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHHHHH
Q 008389 99 AVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKF 178 (567)
Q Consensus 99 ~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (567)
|+++.++.+++.++++.++++++|++.+....+ ....++.+ ......
T Consensus 83 pl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~---------------~~~~~~~~------------------~~~~~~ 129 (521)
T 3l8c_A 83 PVDVHSAPERILAIIEIAKPSLIIAIEEFPLTI---------------EGISLVSL------------------SEIESA 129 (521)
T ss_dssp EEETTSCHHHHHHHHHHSCCSEEEESSCCCSCC---------------TTSEEEEH------------------HHHHHH
T ss_pred ecCccccHHHHHHHHHhCCCCEEEecCcccccc---------------ccCcccch------------------hhhhhc
Confidence 999999999999999999999999987653211 00111111 111111
Q ss_pred HhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHH--hccCCCcEEEEecCccchhhhHHHHH
Q 008389 179 LQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALI--WGMNEGAVYLWTLPMFHCNGWCYTWS 256 (567)
Q Consensus 179 l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~--~~~~~~d~~~~~~p~~~~~g~~~~~~ 256 (567)
.....+ ........++++++++|||||||.||+|.+||+++.+.+...... +++..++++++..|++|..++...+.
T Consensus 130 ~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 208 (521)
T 3l8c_A 130 KLAEMP-YERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYWAP 208 (521)
T ss_dssp HHHTCC-CCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHHHHHH
T ss_pred ccccCC-cccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHHHHHH
Confidence 111111 112234567899999999999999999999999999887776655 67889999999999999998888778
Q ss_pred HhhhcCeeEEeccC---CHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHHHhc
Q 008389 257 LAALCGTSICLRQV---TAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQK 333 (567)
Q Consensus 257 ~~~~g~~~~~~~~~---~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~ 333 (567)
++..|+++++.+.. ++..+++.++++++|++.++|+++..+.......... ++++|.+++||++++++..+.+.+.
T Consensus 209 ~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~~~~gG~~l~~~~~~~~~~~ 287 (521)
T 3l8c_A 209 TLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAK-MPALTHFYFDGEELTVSTARKLFER 287 (521)
T ss_dssp HHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTT-CTTCCEEEECSSCCCHHHHHHHHHH
T ss_pred HHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhcccccc-CccceEEEEecccCCHHHHHHHHHH
Confidence 88889888887653 8999999999999999999999999998876655555 8899999999999999999998854
Q ss_pred --CCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEeccc
Q 008389 334 --GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNV 411 (567)
Q Consensus 334 --~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~ 411 (567)
++++++.||+||+++.++.+.... .........++|.|++++ +++|+|++ |++++.| +.|||+++|+.
T Consensus 288 ~~~~~i~~~YG~TE~~~~~~~~~~~~------~~~~~~~~~~vG~p~~~~-~~~i~d~~-g~~~~~g--~~GEl~v~g~~ 357 (521)
T 3l8c_A 288 FPSAKIINAYGPTEATVALSAIEITR------EMVDNYTRLPIGYPKPDS-PTYIIDED-GKELSSG--EQGEIIVTGPA 357 (521)
T ss_dssp CTTCEEEEEECCGGGSSCSEEEEECH------HHHHHCSSCEEEEECTTS-CEEEECTT-SCBCCTT--CCEEEEEESTT
T ss_pred CCCceEEeCcCccHHhhhhceeeccc------ccccCCCccccccccCCC-EEEEECCC-cCCCCCC--CceEEEecccc
Confidence 899999999999987766543221 111122345799999999 89999976 9999998 78999999999
Q ss_pred ccccccCCCccchhcc----cCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEee
Q 008389 412 VMKGYLKNPKANEETF----ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARA 487 (567)
Q Consensus 412 ~~~gy~~~~~~~~~~~----~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~ 487 (567)
++.|||++++.+.+.| .+|||+|||+|++++||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+
T Consensus 358 v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~ 437 (521)
T 3l8c_A 358 VSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRY 437 (521)
T ss_dssp SCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEEEEEEECCC
T ss_pred cChhhcCCchHhhccCcCCCCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcceEEEEEee
Confidence 9999999999999888 367999999999999999999999999999999999999999999999999999999887
Q ss_pred cCC-CCCcceEEEEEcCCccch--hhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHHHHcCC
Q 008389 488 DER-WGESPCAFVTLKPEVDKS--NEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKEMGP 561 (567)
Q Consensus 488 ~~~-~g~~~~~~v~~~~~~~~~--~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~~ 561 (567)
+.. .++.++++|+++++.... ....+.++|+++++++|+.|++|..+.+++ ||+|++||++|++|++++.+...
T Consensus 438 ~~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKidr~~L~~~~~~~~~ 515 (521)
T 3l8c_A 438 NKEHKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTLINEVNNREG 515 (521)
T ss_dssp SSSCC---CEEEEEECTTSGGGCSSHHHHHHHHHHHSGGGSCGGGSCSEEEECSSCCBCTTSSBCHHHHHHHTC----
T ss_pred cCCCCceEEEEEEEecCccccccccchhhHHHHHHHHHhhCccccCCeEEEEecccCCCCCcCccHHHHhhhhhcCCc
Confidence 544 358899999998875221 122445789999999999999999999888 99999999999999999877643
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-75 Score=622.54 Aligned_cols=501 Identities=22% Similarity=0.347 Sum_probs=426.6
Q ss_pred hhhcccCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcC
Q 008389 15 ANYMALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAG 94 (567)
Q Consensus 15 ~~~~~~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G 94 (567)
..|+++|+.++|++++. ||++|+++.++++||+||+++++++|+.|++.|+++||+|+++++|++++++++|||+++|
T Consensus 22 ~~~~~~~l~~~~~~~a~--pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG 99 (617)
T 3rg2_A 22 GYWQDLPLTDILTRHAA--SDSIAVIDGERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLG 99 (617)
T ss_dssp TSCCCCCTTHHHHTTTT--CCSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHT
T ss_pred CCCCcCCHHHHHHHhhC--CCCeEEecCCceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhcC
Confidence 34678999999999987 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeeccccCChHHHHHHHhccCceEEEEcccch-----HHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccC
Q 008389 95 AVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYF-----KLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALG 169 (567)
Q Consensus 95 ~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 169 (567)
++++|+++.++.+++.++++.+++++++++.... ........... ....+.......
T Consensus 100 ~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~----------- 161 (617)
T 3rg2_A 100 VAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHS-------SIRVVQLLNDSG----------- 161 (617)
T ss_dssp CEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHST-------TCCEEEEETCCS-----------
T ss_pred eEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCC-------ccceeeeccccc-----------
Confidence 9999999999999999999999999999988654 22222222222 333444443321
Q ss_pred CChHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchh
Q 008389 170 RGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCN 249 (567)
Q Consensus 170 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~ 249 (567)
...+.+......... ...+..++++++++|||||||.||+|.++|+++.+.+......+++.+++++++.+|++|.+
T Consensus 162 --~~~~~~~~~~~~~~~-~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~ 238 (617)
T 3rg2_A 162 --EHNLQDAINHPAEDF-TATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNY 238 (617)
T ss_dssp --TTBHHHHHHSCCSSC-CCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHH
T ss_pred --ccchhhhhccccccc-CCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhh
Confidence 122333333332221 22345678999999999999999999999999999999988899999999999999999998
Q ss_pred hhHH--HHHHhhhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCc-CCCCchhhhhccCCCCCHHH
Q 008389 250 GWCY--TWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTI-LPLPHVVHVNTAGAAPPPSV 326 (567)
Q Consensus 250 g~~~--~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~-~~l~~lr~i~~~G~~l~~~~ 326 (567)
++.. .+.+++.|+++++....++..+++.++++++|++.++|+++..+++....... ..++++|.+++|||++++++
T Consensus 239 ~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~ 318 (617)
T 3rg2_A 239 AMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATL 318 (617)
T ss_dssp HHHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHH
T ss_pred hhhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHH
Confidence 8864 67778889999998888999999999999999999999999998875332211 12889999999999999999
Q ss_pred HHHHHh-cCCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCcee-ccccceeEeeCCCCCccCCCCCceEE
Q 008389 327 LHAMSQ-KGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRF-IGLEKLDVIDTRTQQPVPADGKTIGE 404 (567)
Q Consensus 327 ~~~~~~-~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~~i~d~~~~~~~~~~~~~~Ge 404 (567)
.+++.+ +++++++.||+||++..++... ..........|.|+ ++. .+.|+|++ +++++.| +.||
T Consensus 319 ~~~~~~~~~~~~~~~YG~tE~~~~~~~~~----------~~~~~~~~~~G~p~~~~~-~~~i~d~~-~~~~p~G--~~GE 384 (617)
T 3rg2_A 319 AARIPAEIGCQLQQVFGMAEGLVNYTRLD----------DSAEKIIHTQGYPMCPDD-EVWVADAE-GNPLPQG--EVGR 384 (617)
T ss_dssp HHHHHHHTCSEEEEEEEETTEEEEECCTT----------SCHHHHHHCCCEESCTTC-EEEEECTT-SCBCCTT--CCEE
T ss_pred HHHHHHHhCCcEEEEeccCcceeecccCC----------CcccccccCCCccCCCCc-eEEEECCC-CCCCCCC--CceE
Confidence 999985 4999999999999865433221 11223346789997 666 89999976 9999999 8899
Q ss_pred EEEecccccccccCCCccchhcc-cCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEE
Q 008389 405 IVMSGNVVMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASV 483 (567)
Q Consensus 405 i~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v 483 (567)
|+|+|+.++.||+++++.+...| .++||+|||+|++++||.++++||.||+||++|++|+|.|||+.|.++|+|.+++|
T Consensus 385 l~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~v 464 (617)
T 3rg2_A 385 LMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAAL 464 (617)
T ss_dssp EEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEE
T ss_pred EEecCccccchhcCChhhhhhccCCCCceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEE
Confidence 99999999999999999999999 68999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHh-cCCCCCCCceeecCc-ccCCCCccccHHHHHHHHHHc
Q 008389 484 VARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRA-KMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKEM 559 (567)
Q Consensus 484 ~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~ 559 (567)
++.+++..|+.++++++..+.. +. .++++++++ .||.|++|..+++++ ||+|++||++|++|++.+.+.
T Consensus 465 v~~~~~~~~~~~~a~vv~~~~~---~~----~~l~~~l~~~~lp~~~vP~~~~~v~~lP~t~~GKidR~~L~~~~~~~ 535 (617)
T 3rg2_A 465 VSMEDELMGEKSCAYLVVKEPL---RA----VQVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASR 535 (617)
T ss_dssp EEEEETTTEEEEEEEEEESSCC---CH----HHHHHHHHTTTCCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHHH
T ss_pred EeccCcccCeeEEEEEEeCCCC---CH----HHHHHHHHhCCCccccCCcEEEEecccCCCCCCCCcHHHHHHHHhcc
Confidence 9999988889999999987643 23 678889988 699999999999888 999999999999999987653
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-76 Score=615.55 Aligned_cols=500 Identities=25% Similarity=0.327 Sum_probs=407.5
Q ss_pred ccC-HHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCee
Q 008389 19 ALT-PLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVL 97 (567)
Q Consensus 19 ~~t-~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~ 97 (567)
.++ +.++|+++++ +|+++|+++.++++||+||+++++++|+.|++.|+++||+|+++++|++++++++|||+++|+++
T Consensus 22 ~~~~~~~~l~~~~~-~p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~ 100 (529)
T 2v7b_A 22 LFNFAAYLFRLNET-RAGKTAYIDDTGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVP 100 (529)
T ss_dssp CCCHHHHHHHHTGG-GTTSEEEECSSCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHHHHHHTCEE
T ss_pred ceeHHHHHHHhhhc-cCCceEEEeCCCCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCceE
Confidence 344 7899999999 99999999989999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCC-CeEEEecCCCCCcccchhccCCChHHHH
Q 008389 98 NAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKP-PLLIVIGDESCDPKDLKYALGRGAVEYE 176 (567)
Q Consensus 98 v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 176 (567)
+|+++.++.+++.++++.++++++|++.+..+.+........ .. ..++.++..... ......++
T Consensus 101 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~--------~~~~~~~~ 165 (529)
T 2v7b_A 101 VVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAE-------HDGCQLIVSQPRESE--------PRLAPLFE 165 (529)
T ss_dssp EECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC----------CCEEEEECC--------------CCCBHH
T ss_pred EecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhcc-------ccCceEEEecccccc--------cccccchh
Confidence 999999999999999999999999999887665544332111 12 334443332100 00112455
Q ss_pred HHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHH-HHHHHHHHHHhccCCCcEEEEecCccchhhhHHHH
Q 008389 177 KFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGA-YLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTW 255 (567)
Q Consensus 177 ~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l-~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~ 255 (567)
+++....... ...+..++++++++|||||||.||+|.++|+++ ..........+++.++|++++.+|++|.+|+...+
T Consensus 166 ~~~~~~~~~~-~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~ 244 (529)
T 2v7b_A 166 ELIDAAAPAA-KAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGL 244 (529)
T ss_dssp HHHHTSCCCS-SCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHHHT
T ss_pred hhhccCCCcc-cccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHHHH
Confidence 5555332221 123456789999999999999999999999998 55555454557889999999999999999987654
Q ss_pred -HHhhhcCeeEEe-ccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHHHh-
Q 008389 256 -SLAALCGTSICL-RQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQ- 332 (567)
Q Consensus 256 -~~~~~g~~~~~~-~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~- 332 (567)
..+..|+++++. ..+++..+++.|+++++|++.++|+++..+++........ ..++|.+++||+++++++.+.+.+
T Consensus 245 ~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~~~~gGe~l~~~~~~~~~~~ 323 (529)
T 2v7b_A 245 TFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARA-DVAIRICTSAGEALPREIGERFTAH 323 (529)
T ss_dssp HHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGG-GCCCCEEEECSSCCCHHHHHHHHHH
T ss_pred HHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCccccccc-CCceEEEEEcCCCCCHHHHHHHHHH
Confidence 456677777766 5679999999999999999999999999999865443332 237999999999999999999986
Q ss_pred cCCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEecccc
Q 008389 333 KGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVV 412 (567)
Q Consensus 333 ~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~ 412 (567)
+++++++.||+||+++++..+.... ...+++|.|++++ +++|+|++ |++++.| +.|||+++|+.+
T Consensus 324 ~g~~i~~~YG~TE~~~~~~~~~~~~-----------~~~~~~G~p~~~~-~~~i~d~~-g~~~~~g--~~GEl~v~g~~~ 388 (529)
T 2v7b_A 324 FGCEILDGIGSTEMLHIFLSNRAGA-----------VEYGTTGRPVPGY-EIELRDEA-GHAVPDG--EVGDLYIKGPSA 388 (529)
T ss_dssp HSCCEEEEEECTTTSSEEEECCTTC-----------CCTTSCCEECTTC-EEEEECTT-SCBCCTT--SCEEEEEECTTC
T ss_pred hCCceeeeEchhhcCceeeccccCC-----------CccCCcccCCCCC-EEEEECCC-CCCCCCC--CccEEEEecCCc
Confidence 5999999999999976654432111 2346899999999 89999976 9999988 889999999999
Q ss_pred cccccCCCccchhcccCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeecCCCC
Q 008389 413 MKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWG 492 (567)
Q Consensus 413 ~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g 492 (567)
+.||+++++.+...|.+|||+|||+|++++||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++. +...+
T Consensus 389 ~~gY~~~~~~t~~~f~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~-~~~~~ 467 (529)
T 2v7b_A 389 AVMYWNNREKSRATFLGEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGGL 467 (529)
T ss_dssp CCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEEEEEE-EETTE
T ss_pred ccccCCChHHHHHhhhcCCcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEEe-cCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 55567
Q ss_pred CcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHH
Q 008389 493 ESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRA 554 (567)
Q Consensus 493 ~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~ 554 (567)
+.+++++++.++.... +...++++++++++|+.|++|..+++++ ||+|++||++|++|++
T Consensus 468 ~~~~a~vv~~~~~~~~--~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 468 VKTRAFVVLKREFAPS--EILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLRE 528 (529)
T ss_dssp EEEEEEEEECTTCCCC--HHHHHHHHHHHHTTSCTTTSCSEEEEESCCCBCTTSCBCHHHHHC
T ss_pred eEEEEEEEecCCCCcc--hhHHHHHHHHHHhhcchhhCCeEEEEeccCCCCCccchhHHhHhh
Confidence 8899999988764211 1233689999999999999999999888 9999999999999986
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-76 Score=615.49 Aligned_cols=496 Identities=20% Similarity=0.307 Sum_probs=390.5
Q ss_pred cCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCeeee
Q 008389 20 LTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNA 99 (567)
Q Consensus 20 ~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~ 99 (567)
||+.++|+++++++||++|+++.++++||+||.+++.++|+.|++. +||+|+++++|++++++++|||+++|++++|
T Consensus 1 mtl~~~l~~~a~~~pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vp 77 (501)
T 3ipl_A 1 MSLDFWLYKQAQQNGHHIAITDGQESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLANIEIAM 77 (501)
T ss_dssp --CCCHHHHHHHHHTTSEEEECSSCEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTTCEEEE
T ss_pred CCHHHHHHHHHHhcCCceEEEeCCcEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEe
Confidence 5788899999999999999999999999999999999999999986 8999999999999999999999999999999
Q ss_pred ccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCC-ChHHHHHH
Q 008389 100 VNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGR-GAVEYEKF 178 (567)
Q Consensus 100 i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~ 178 (567)
+++.++.+++.++++.++++++|++.+.......... .. ....+......... ....... .....+..
T Consensus 78 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 146 (501)
T 3ipl_A 78 INTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVS-LD-------DIEFAGRDITTNGL---LDNTMGIQYDTSNETV 146 (501)
T ss_dssp CCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEE-TT-------C--------------------------------
T ss_pred cCccCCHHHHHHHHHhcCCCEEEEccccccccccccc-cc-------cceeeeeecccccc---cccccccccccchhhc
Confidence 9999999999999999999999998765332110000 00 00000000000000 0000000 00001111
Q ss_pred HhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhhHHHHHHh
Q 008389 179 LQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLA 258 (567)
Q Consensus 179 l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~ 258 (567)
...............++++++++|||||||.||+|.++|+++.+.+......++++++|++++.+|++|.+|+...+.++
T Consensus 147 ~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l 226 (501)
T 3ipl_A 147 VPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAV 226 (501)
T ss_dssp ---CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHHHHHHH
T ss_pred cccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHHHHHHH
Confidence 11111111112235678999999999999999999999999999999888889999999999999999999999888888
Q ss_pred hhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHHHhcCCeee
Q 008389 259 ALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQKGFHVT 338 (567)
Q Consensus 259 ~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~i~ 338 (567)
..|+++++.+.+++..+++.|+++++|++.++|+++..|++...... .++|.+++||+++++++.+.+.+.+++++
T Consensus 227 ~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~----~~lr~i~~gG~~l~~~~~~~~~~~~~~~~ 302 (501)
T 3ipl_A 227 IEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEP----YNLQKILLGGAKLSATMIETALQYNLPIY 302 (501)
T ss_dssp HHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSC----TTCCEEEECSSCCCHHHHHHHHHTTCCEE
T ss_pred HcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCc----CcccEEEEeCCCCCHHHHHHHHHhCCCEe
Confidence 89999999888999999999999999999999999999998654432 37899999999999999999998899999
Q ss_pred eccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEecccccccccC
Q 008389 339 HTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLK 418 (567)
Q Consensus 339 ~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~ 418 (567)
+.||+||+++.+..+. .........++|.|++++ +++|+|++ .+ +.|||+++|+.++.||++
T Consensus 303 ~~YG~TE~~~~~~~~~---------~~~~~~~~~~~G~p~~~~-~~~i~d~~------~~--~~GEl~v~g~~~~~gY~~ 364 (501)
T 3ipl_A 303 NSFGMTETCSQFLTAT---------PEMLHARPDTVGMPSANV-DVKIKNPN------KE--GHGELMIKGANVMNGYLY 364 (501)
T ss_dssp EEEEEGGGTEEEEEEC---------HHHHHHCTTCCBEECTTC-EEEEESCC------SS--CCEEEEEESTTSCSCCSB
T ss_pred ccccccccccceeecC---------ccccccCCCCCCCCCCCc-EEEEecCC------CC--CccEEEEeccchhhhhCc
Confidence 9999999976554432 222334557899999999 89999976 22 579999999999999999
Q ss_pred CCccchhcccCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeecCCCCCcceEE
Q 008389 419 NPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAF 498 (567)
Q Consensus 419 ~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~ 498 (567)
+++.+.. |.+|||+|||+|++++||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..|+.++++
T Consensus 365 ~~~~t~~-~~~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~ 443 (501)
T 3ipl_A 365 PTDLTGT-FENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLY 443 (501)
T ss_dssp STTCCCS-EETTEEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEE
T ss_pred Chhhcch-hcCCceecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEE
Confidence 9998887 899999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred EEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHHHHc
Q 008389 499 VTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKEM 559 (567)
Q Consensus 499 v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~ 559 (567)
++...+. +. ++++++++++|+.|++|..+.+++ ||+|++||++|++|++..++.
T Consensus 444 v~~~~~~---~~----~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~l~~~~~~~ 498 (501)
T 3ipl_A 444 FVSESDI---SK----AQLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLYREGHHH 498 (501)
T ss_dssp EEESSCC---CH----HHHHHHHHHHSCGGGSCSEEEECSSCC-------------------
T ss_pred EEeCCCC---CH----HHHHHHHHhhCccccCCCEEEEecccCCCCCCCEeHHHHhhccccc
Confidence 9865432 33 688999999999999999999888 999999999999999987764
|
| >4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-77 Score=627.43 Aligned_cols=481 Identities=21% Similarity=0.275 Sum_probs=319.7
Q ss_pred ccCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCeee
Q 008389 19 ALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLN 98 (567)
Q Consensus 19 ~~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v 98 (567)
..|+.++|+++++++||++|+++.++++||+||+++++++|+.|.++|+++||+|+++++|++++++++|||+++|++++
T Consensus 74 ~~~l~~~l~~~a~~~pd~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v 153 (570)
T 4gr5_A 74 GACVHELFEAQAARAPDAVALLHEADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYT 153 (570)
T ss_dssp SCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEE
T ss_pred cCCHHHHHHHHHHHCCCCeEEECCCCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHHCCEEE
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHHHHH
Q 008389 99 AVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKF 178 (567)
Q Consensus 99 ~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (567)
|+++.++.+++.++++.++++++|++.+....+ .....+.+.+...
T Consensus 154 pl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~---------------~~~~~~~~~~~~~------------------- 199 (570)
T 4gr5_A 154 MLDPQFPVERLALSLEDTGAPLLVTSRPLSGRL---------------TGTTTLYVEDEAA------------------- 199 (570)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSS---------------CSSEEEECCC----------------------
T ss_pred EcCCCChHHHHHHHHHhcCCCEEEecchhhhcc---------------cCCcceeeecccc-------------------
Confidence 999999999999999999999999987653311 1111122111100
Q ss_pred HhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhhHHHHHHh
Q 008389 179 LQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLA 258 (567)
Q Consensus 179 l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~ 258 (567)
.............++++++|+|||||||.||+|.++|+++.+.+.. ...++++++|++++.+|++|..+....+.++
T Consensus 200 --~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l 276 (570)
T 4gr5_A 200 --SDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLELFGAL 276 (570)
T ss_dssp ------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHHHHHHH
T ss_pred --ccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHHHHHHHH
Confidence 0011111223356789999999999999999999999998766544 3456788999999999998877777777788
Q ss_pred hhcCeeEEec--cCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHHHhc--C
Q 008389 259 ALCGTSICLR--QVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQK--G 334 (567)
Q Consensus 259 ~~g~~~~~~~--~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~--~ 334 (567)
+.|+++++.. .+++..+++.|+++++|++.++|+++..|++.... . ++++|.+++||++++++..+.+.+. +
T Consensus 277 ~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~---~-~~~lr~~~~gG~~l~~~~~~~~~~~~~~ 352 (570)
T 4gr5_A 277 LFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPE---A-FEGVRYAITGGEPASVPHVAKARRDHPA 352 (570)
T ss_dssp TTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGG---G-GTTCSEEEEESSCCCHHHHHHHHHHCTT
T ss_pred hcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchh---h-CCCceEEEEecccCCHHHHHHHHHhCCC
Confidence 8888888875 46899999999999999999999999999875432 2 7899999999999999988888754 7
Q ss_pred CeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEecccccc
Q 008389 335 FHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMK 414 (567)
Q Consensus 335 ~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~~ 414 (567)
+++++.||+||++++++.+..... ........+|.|++++ +++|+|++ +++++.| +.|||+|+|+.++.
T Consensus 353 ~~l~~~YG~TE~~~~~~~~~~~~~-------~~~~~~~~iG~p~~~~-~v~i~d~~-~~~~~~G--~~GEl~v~g~~v~~ 421 (570)
T 4gr5_A 353 LRLGNGYGPAESMGFTTHHAVVAG-------DLSGTALPIGVPLAGK-RAYVLDDD-LKPAANG--ALGELYVAGAGLAH 421 (570)
T ss_dssp CEEEEEECCGGGCSCSEEEECCGG-------GTTSSSCCCBEECTTE-EEEEECTT-SCBCCTT--CEEEEEEEETTCCC
T ss_pred cEEEEeechhhheeeeeeeeeccc-------ccCCCccccceeeCCC-EEEEECCC-CCCCCCC--CcEEEEEeecccch
Confidence 899999999999877665432211 1112335689999999 89999976 9999998 89999999999999
Q ss_pred cccCCCccchhccc---------CCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEE
Q 008389 415 GYLKNPKANEETFA---------NGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVA 485 (567)
Q Consensus 415 gy~~~~~~~~~~~~---------~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~ 485 (567)
||+++++.+...|. +|||+|||+|++++||+++++||+||+||++|++|+|.|||++|.++|+|.+++|++
T Consensus 422 GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~ 501 (570)
T 4gr5_A 422 GYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLA 501 (570)
T ss_dssp EETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC----------------------------------
T ss_pred hcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCCcceEEEEE
Confidence 99999999998883 269999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHH
Q 008389 486 RADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAK 555 (567)
Q Consensus 486 ~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~ 555 (567)
.+++.+++.++++|+..++....+. ++|+++++++|+.|++|..+++++ ||+|++||++|++|++.
T Consensus 502 ~~~~~~~~~~~a~vv~~~~~~~~~~----~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~ 568 (570)
T 4gr5_A 502 QDSRLGDKQLVAYVVAERADAPPDA----AELRRHVAEALPAYMVPVECVPVDELPRTPNGKLDRRALTGS 568 (570)
T ss_dssp -----------------------------------------------------------------------
T ss_pred eeCCCCCeEEEEEEEecCCCCCcCH----HHHHHHHHhhCccccCCcEEEEcccCCCCCCcCcchHhhhcc
Confidence 9988888999999987665433444 789999999999999999999888 99999999999999875
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-75 Score=615.55 Aligned_cols=480 Identities=16% Similarity=0.185 Sum_probs=396.5
Q ss_pred hhhcccCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcC
Q 008389 15 ANYMALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAG 94 (567)
Q Consensus 15 ~~~~~~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G 94 (567)
..+++.|+.++|+++++++||++|+++.++++||+||+++++++|+.|++.|+++||+|+++++|++++++++|||+++|
T Consensus 22 ~~~~~~tl~~~~~~~a~~~Pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailkaG 101 (620)
T 4dg8_A 22 DLYAHPTVVARFSEMAALHPHREAIRDRFGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSG 101 (620)
T ss_dssp SGGGSCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHhCCCCeEEEcCCCcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhC
Confidence 34557899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHH
Q 008389 95 AVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVE 174 (567)
Q Consensus 95 ~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 174 (567)
++++|++|.++.+++.++++.+++++++++....... .....+.+...
T Consensus 102 a~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~---------------~~~~~~~~~~~----------------- 149 (620)
T 4dg8_A 102 HHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPA---------------NGLPCVPVRHL----------------- 149 (620)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCC---------------TTSCEEEGGGC-----------------
T ss_pred CEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccc---------------cCCceeeeccC-----------------
Confidence 9999999999999999999999999999765432110 00111111100
Q ss_pred HHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhhHHH
Q 008389 175 YEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYT 254 (567)
Q Consensus 175 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~ 254 (567)
.............++++++++|||||||.||||.++|+++.+.+.. ...+++.++|++++..|++|..++...
T Consensus 150 ------~~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~ 222 (620)
T 4dg8_A 150 ------PAAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLEI 222 (620)
T ss_dssp ------CCCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHHH
T ss_pred ------CcCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHHH
Confidence 0001111112346789999999999999999999999999877655 456788999999999999999999888
Q ss_pred HHHhhhcCeeEEec--cCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHHHh
Q 008389 255 WSLAALCGTSICLR--QVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQ 332 (567)
Q Consensus 255 ~~~~~~g~~~~~~~--~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~ 332 (567)
+.+++.|+++++.. .+++..+++.|+++++|++.++|+++..+++... .. ++++|.+++|||+++++..+.+.+
T Consensus 223 ~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~---~~-l~~lr~v~~gGe~l~~~~~~~~~~ 298 (620)
T 4dg8_A 223 WGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDP---DC-LGGLRQLLTGGDILSVPHVRRALL 298 (620)
T ss_dssp HHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCG---GG-GTTCSEEEEESSCCCHHHHHHHHH
T ss_pred HHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcCh---hh-CCCccEEEEEeCcCCHHHHHHHHH
Confidence 88899999988863 5789999999999999999999999999986432 22 789999999999999888887764
Q ss_pred -c-CCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEecc
Q 008389 333 -K-GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGN 410 (567)
Q Consensus 333 -~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~ 410 (567)
. ++++++.||+||++..++...... .........+|.|++++ +++|+|++....++.| +.|||+|+|+
T Consensus 299 ~~~~~~l~n~YG~TE~~~~~~~~~~~~-------~~~~~~~~~iG~p~~~~-~~~i~d~~~~~~~~~g--~~GEl~i~G~ 368 (620)
T 4dg8_A 299 RHPRLHLVNGYGPTENTTFTCCHVVTD-------DDLEEDDIPIGKAIAGT-AVLLLDEHGQEIAEPD--RAGEIVAFGA 368 (620)
T ss_dssp HCTTCEEEEEECCGGGCSCSEEEECCT-------GGGGSSSCCCBEECTTE-EEEEECTTSCBCCSSS--CCEEEEEEET
T ss_pred hCCCeEEEeeEchhhhhhheEEEeccc-------cccCCCCCCceecccCc-EEEEECccCCCCCCCC--CceEEEEecc
Confidence 3 889999999999987765443221 12223346899999999 8999998844447777 7899999999
Q ss_pred cccccccCCCccchhcccC--------CccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeE
Q 008389 411 VVMKGYLKNPKANEETFAN--------GWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEAS 482 (567)
Q Consensus 411 ~~~~gy~~~~~~~~~~~~~--------g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~ 482 (567)
.++.||+++++.+.+.|.+ +||+|||+|++++||+++++||.||+||++|++|+|.|||++|.++|+|.+++
T Consensus 369 ~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~ 448 (620)
T 4dg8_A 369 GLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCA 448 (620)
T ss_dssp TCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTTEEEEE
T ss_pred ccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCCccEEE
Confidence 9999999999999999954 79999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHHHHc
Q 008389 483 VVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKEM 559 (567)
Q Consensus 483 v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~ 559 (567)
|++.+++..+ .++++++...+ .+++.++++||.|++|..+++++ ||+|++||++|++|++.+.+.
T Consensus 449 Vv~~~~~~~~-~lv~~~~~~~~-----------~~~~~l~~~Lp~y~~P~~~~~v~~lP~t~~GKidR~~L~~~~~~~ 514 (620)
T 4dg8_A 449 LLVRERNGVK-QLLCAWTGKAD-----------ASPQALLRQLPTWQRPHACVRVEALPLTAHGKLDRAALLRRLEEP 514 (620)
T ss_dssp EEEEEETTEE-EEEEEEEECTT-----------CCCHHHHHHSCGGGSCSEEEECSSCCCC----CCHHHHHHHTCSC
T ss_pred EEEEeCCCce-EEEEEEecChH-----------HHHHHHHHhChhhcCCcEEEEECcCCCCcccCHhHHHHhhccccc
Confidence 9999887533 34444443221 22345677899999999999888 999999999999999876543
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-75 Score=655.87 Aligned_cols=513 Identities=23% Similarity=0.343 Sum_probs=342.9
Q ss_pred ccCHHHHHhhhhhcCCCceeEEEC--CccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCe
Q 008389 19 ALTPLWFLDRAATVHPTRTSVVHG--STRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAV 96 (567)
Q Consensus 19 ~~t~~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~ 96 (567)
++|+.++|+++++++||++|+++. ++++||+||+++++++|+.|++.|+++||+|+++++|++++++++|||+++|++
T Consensus 60 ~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~ 139 (979)
T 3tsy_A 60 HLSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGAT 139 (979)
T ss_dssp TSCHHHHHTTTGGGTTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCE
T ss_pred CCCHHHHHHHHHHhCCCCeEEEECCCCcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCE
Confidence 589999999999999999999996 689999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHHH
Q 008389 97 LNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYE 176 (567)
Q Consensus 97 ~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 176 (567)
++|++|.++.+++.++++.++++++|++.+..+.+...... ....++.++...... ...+...+.
T Consensus 140 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~------~~~~~~~~~ 204 (979)
T 3tsy_A 140 ATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQND---------DGVVIVCIDDNESVP------IPEGCLRFT 204 (979)
T ss_dssp EEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHT---------SCCEEEECCCCTTSC------CCTTEEEGG
T ss_pred EEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhc---------CCceEEEeCCccccc------CCcccccHH
Confidence 99999999999999999999999999998877665544321 123344444321110 112223344
Q ss_pred HHHhcCCCC--CCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHH----HhccCCCcEEEEecCccchhh
Q 008389 177 KFLQTGDPQ--FDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVAL----IWGMNEGAVYLWTLPMFHCNG 250 (567)
Q Consensus 177 ~~l~~~~~~--~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~----~~~~~~~d~~~~~~p~~~~~g 250 (567)
++....... ........++++++|+|||||||.||+|.++|+++.+.+..... .+++.++|++++.+|++|.++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~ 284 (979)
T 3tsy_A 205 ELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYA 284 (979)
T ss_dssp GTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHH
T ss_pred HHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHH
Confidence 433322210 11223456789999999999999999999999999888766543 346789999999999999999
Q ss_pred hHH-HHHHhhhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHH
Q 008389 251 WCY-TWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHA 329 (567)
Q Consensus 251 ~~~-~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~ 329 (567)
+.. .+..+..|+++++.+.+++..+++.|+++++|++.++|+++..+++........ ++++|.+++||+++++++.++
T Consensus 285 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-l~~lr~~~~gg~~l~~~~~~~ 363 (979)
T 3tsy_A 285 LNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYD-LSSIRVVKSGAAPLGKELEDA 363 (979)
T ss_dssp HHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSC-CTTCCEEEESSCCCCSSHHHH
T ss_pred HHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCC-ccceEEEEEcCCCCCHHHHHH
Confidence 864 455667788888888899999999999999999999999999999887665555 899999999999999999999
Q ss_pred HHhc--CCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEE
Q 008389 330 MSQK--GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVM 407 (567)
Q Consensus 330 ~~~~--~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v 407 (567)
+.+. ++++++.||+||++.+++.+..... .......+++|.|++++ +++|+|++++++++.| +.|||+|
T Consensus 364 ~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~------~~~~~~~~~~G~p~~~~-~~~i~d~~~~~~~~~g--~~GEl~i 434 (979)
T 3tsy_A 364 VNAKFPNAKLGQGYGMTEAGPVLAMSLGFAK------EPFPVKSGACGTVVRNA-EMKIVDPDTGDSLSRN--QPGEICI 434 (979)
T ss_dssp HHHHCTTCEEEECEECGGGCSEEEECGGGSS------SCCCCCTTCCCEECSSC-EEEEECTTSCCBCCTT--CCEEEEE
T ss_pred HHHHCCCCeEEeeechhhhhHHHHhCCCCCC------CccccCCCCcCcccCCc-EEEEEeCCCCCCCCCC--CccEEEE
Confidence 9854 8999999999999876655421111 01112347889999999 8999998889999998 7899999
Q ss_pred ecccccccccCCCccchhcc-cCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEe
Q 008389 408 SGNVVMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVAR 486 (567)
Q Consensus 408 ~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~ 486 (567)
+|+.++.||+++++.+...| .+|||+|||+|++++||+++++||.||+||++|++|+|.|||++|.++|+|.+++|++.
T Consensus 435 ~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv~~ 514 (979)
T 3tsy_A 435 RGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAM 514 (979)
T ss_dssp ESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC--------------------------------
T ss_pred ECCCccccccCChhhhhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEe
Confidence 99999999999999999999 68999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHHHHcCC
Q 008389 487 ADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKEMGP 561 (567)
Q Consensus 487 ~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~~ 561 (567)
+++..|+.++++|+..++. ..+. ++++++++++|+.|++|..+++++ ||+|++||++|++|++++.+...
T Consensus 515 ~~~~~g~~~~a~vv~~~~~-~~~~----~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~ 585 (979)
T 3tsy_A 515 KEEAAGEVPVAFVVKSKDS-ELSE----DDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAKLANGLG 585 (979)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred cccCCCcEEEEEEEECCCC-CCCH----HHHHHHHHHhcccccCCeEEEEeCCcCcCCCCCeeHHHHHHHHHhhcC
Confidence 9988899999999987664 3444 688999999999999999999888 99999999999999999877543
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-75 Score=602.38 Aligned_cols=475 Identities=24% Similarity=0.335 Sum_probs=384.1
Q ss_pred ccCHHHHHhhhhhcCCC-ceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCee
Q 008389 19 ALTPLWFLDRAATVHPT-RTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVL 97 (567)
Q Consensus 19 ~~t~~~~l~~~a~~~p~-~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~ 97 (567)
-+|+.++|.++++++|+ ++|+++.++++||+||.+++.++|..|. .|++|+++++|++++++++|||+++|+++
T Consensus 21 ~~tl~~~l~~~a~~~p~d~~Al~~~~~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~la~~~~Ga~~ 95 (505)
T 3nyq_A 21 MSSLFPALSPAPTGAPADRPALRFGERSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAALLAGVAA 95 (505)
T ss_dssp ---CCTTTSSCCCSGGGGSEEEEETTEEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHHHHHHHHTCCE
T ss_pred cchhHHHHHHHHHhCCCCCeEEEECCeeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHHHHHHHhCCEE
Confidence 46788999999999997 9999999999999999999999998874 48899999999999999999999999999
Q ss_pred eeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHHHH
Q 008389 98 NAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEK 177 (567)
Q Consensus 98 v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (567)
+|+++.++.+++.++++.++++++|++.+.... . .. .....+.+...
T Consensus 96 vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~--~---~~--------~~~~~~~~~~~-------------------- 142 (505)
T 3nyq_A 96 VPLNPKSGDKELAHILSDSAPSLVLAPPDAELP--P---AL--------GALERVDVDVR-------------------- 142 (505)
T ss_dssp EEECTTCCHHHHHHHHHHHCCSEEEECTTCCCC--G---GG--------TTSEEEECCTT--------------------
T ss_pred EEcCCCCCHHHHHHHHHHCCCCEEEECCccccc--h---hh--------ccccccccccc--------------------
Confidence 999999999999999999999999998652100 0 00 11112222111
Q ss_pred HHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhhHH-HHH
Q 008389 178 FLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCY-TWS 256 (567)
Q Consensus 178 ~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~-~~~ 256 (567)
.....+....+++++++++|||||||.||+|.++|+++.+.+......++++++|++++.+|++|..|+.. .+.
T Consensus 143 -----~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~ 217 (505)
T 3nyq_A 143 -----ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILG 217 (505)
T ss_dssp -----CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTTHH
T ss_pred -----cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHHHH
Confidence 00011123356789999999999999999999999999999999888999999999999999999999864 566
Q ss_pred HhhhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCC--cCCCCchhhhhccCCCCCHHHHHHHHhc-
Q 008389 257 LAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDT--ILPLPHVVHVNTAGAAPPPSVLHAMSQK- 333 (567)
Q Consensus 257 ~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~--~~~l~~lr~i~~~G~~l~~~~~~~~~~~- 333 (567)
.+..|+++++...+++..+++.+ ++++|+++++|+++..+++...... ...++++|.+++||+++++++.+++.+.
T Consensus 218 ~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~ 296 (505)
T 3nyq_A 218 PLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAAT 296 (505)
T ss_dssp HHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHHHH
T ss_pred HHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHHhc
Confidence 67788888888889999999999 8899999999999999987432211 1126788999999999999999999854
Q ss_pred CCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCC-CCCceEEEEEecccc
Q 008389 334 GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPA-DGKTIGEIVMSGNVV 412 (567)
Q Consensus 334 ~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~-~~~~~Gei~v~~~~~ 412 (567)
++++++.||+||++..++..... ....+++|.|++++ +++|+|++ +++++. +.++.|||+++|+.+
T Consensus 297 ~~~~~~~YG~TE~~~~~~~~~~~-----------~~~~~~vG~p~~~~-~~~i~d~~-g~~~~~~~~g~~GEl~v~g~~v 363 (505)
T 3nyq_A 297 GRRVIERYGMTETLMNTSVRADG-----------EPRAGTVGVPLPGV-ELRLVEED-GTPIAALDGESVGEIQVRGPNL 363 (505)
T ss_dssp SCCCEEEEEETTTEEEEECCTTS-----------CCCTTCCCEECTTC-EEEEC------CCCCCCSCCCEEEEEESTTS
T ss_pred CCeeecccchhhcccccccCCCC-----------CCCCCCcccCCCCC-EEEEECCC-CCCcccCCCCceEEEEEecCch
Confidence 99999999999997655443211 12346799999999 89999987 888876 223789999999999
Q ss_pred cccccCCCccchhcc-cCCccccCceEEEeCCCcEEEeccc-cceeeeCceecchHHHHHHHhcCCCceeeEEEEeecCC
Q 008389 413 MKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRS-KDIIISGGENISSVEVENMMYLHPAVLEASVVARADER 490 (567)
Q Consensus 413 ~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~l~~~GR~-~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~ 490 (567)
+.||+++++.+...| .+|||+|||+|++++||++++.||. ||+||++|++|+|.|||++|.++|+|.+++|++.+++.
T Consensus 364 ~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~ 443 (505)
T 3nyq_A 364 FTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPD 443 (505)
T ss_dssp CCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETT
T ss_pred hhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCccEEEEEeeECCC
Confidence 999999999999999 5899999999999999999999997 58999999999999999999999999999999999999
Q ss_pred CCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHH
Q 008389 491 WGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRA 554 (567)
Q Consensus 491 ~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~ 554 (567)
.|+.++++|++.++....+. ++|+++++++|+.|++|+.+.+++ ||+|++||++|++|++
T Consensus 444 ~g~~l~a~vv~~~~~~~~~~----~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 444 LGERIVAWIVPADPAAPPAL----GTLADHVAARLAPHKRPRVVRYLDAVPRNDMGKIMKRALNR 504 (505)
T ss_dssp TEEEEEEEEEESSTTSCCCH----HHHHHHHHHHTCGGGSCSEEEECSCCCC-------------
T ss_pred CCcEEEEEEEECCCCCCCCH----HHHHHHHHhhCCCCcCccEEEEECCCCCCCCcCeeHHhhcc
Confidence 89999999998875434444 789999999999999999999888 9999999999999986
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-73 Score=600.19 Aligned_cols=500 Identities=19% Similarity=0.227 Sum_probs=318.3
Q ss_pred chhhhcccCHHHHHhhhhhcCCCceeEEECC----------ccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHH
Q 008389 13 NAANYMALTPLWFLDRAATVHPTRTSVVHGS----------TRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPA 82 (567)
Q Consensus 13 ~~~~~~~~t~~~~l~~~a~~~p~~~a~~~~~----------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~ 82 (567)
....++.+|+.++|+++++++||++|+++.+ +++||+||.++++++|+.|.+.|+ +||+|+++++|+++
T Consensus 13 ~~~~~~~~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~ 91 (562)
T 3ite_A 13 SAQYTSTVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLI 91 (562)
T ss_dssp -----CCCCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHH
T ss_pred ceeecccCCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHH
Confidence 3445668999999999999999999999743 789999999999999999999999 79999999999999
Q ss_pred HHHHHHhhhhcCCeeeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcc
Q 008389 83 IYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPK 162 (567)
Q Consensus 83 ~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 162 (567)
+++++|||+++|++++|+++.++.+++.++++.++++++|++.+...... ......++..
T Consensus 92 ~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~------------~~~~~~~~~~-------- 151 (562)
T 3ite_A 92 AFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE------------LPPETKVLDT-------- 151 (562)
T ss_dssp HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC------------CCTTCEEEET--------
T ss_pred HHHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccc------------cCccceeecc--------
Confidence 99999999999999999999999999999999999999999876532110 0011111111
Q ss_pred cchhccCCChHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHH--------hccC
Q 008389 163 DLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALI--------WGMN 234 (567)
Q Consensus 163 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~--------~~~~ 234 (567)
....+.+.+....... ......++++++|+|||||||.||+|.++|+++.+.+...... +.+.
T Consensus 152 --------~~~~~~~~~~~~~~~~-~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~ 222 (562)
T 3ite_A 152 --------KNQSFIENLSTQDTSD-ILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELG 222 (562)
T ss_dssp --------TCHHHHHHHHHSCCSC-CCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCT
T ss_pred --------cchhhhhhcccccccc-cccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccC
Confidence 1123333333332221 2233456788999999999999999999999998877665543 3477
Q ss_pred CCcEEEEecCccchhhhHHHHHHhhhcCeeEEeccCC-HHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchh
Q 008389 235 EGAVYLWTLPMFHCNGWCYTWSLAALCGTSICLRQVT-AKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVV 313 (567)
Q Consensus 235 ~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~~~-~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr 313 (567)
..+++++..|+.|..++...+.++..|++.++..... +..+.+.++++++|++.++|++++.+..... . ++++|
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~~~----~-~~~lr 297 (562)
T 3ite_A 223 GVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLVPE----D-APHLV 297 (562)
T ss_dssp TTCEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCCGG----G-STTCC
T ss_pred cCceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccCcc----c-cCceE
Confidence 8899999999999888887788888888888775543 5778899999999999999999988754432 2 78999
Q ss_pred hhhccCCCCCHHHHHHHHhc-CCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCC
Q 008389 314 HVNTAGAAPPPSVLHAMSQK-GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQ 392 (567)
Q Consensus 314 ~i~~~G~~l~~~~~~~~~~~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~ 392 (567)
.+++||+++++++.+.+.+. ++++++.||+||++..++....... ....++|.|++++ .++|+|++++
T Consensus 298 ~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~----------~~~~~~G~p~~~~-~~~i~d~~~~ 366 (562)
T 3ite_A 298 YLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRILPD----------SDTRCIGHPLGDS-VAHVLAPGSN 366 (562)
T ss_dssp EEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEEEECCTT----------SCTTEEEEECTTC-EEEEECTTSS
T ss_pred EEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeeeeeecCC----------CCCccccccCCCC-eEEEEeCCCC
Confidence 99999999999999999865 8999999999999876665433221 1236789999999 8999999889
Q ss_pred CccCCCCCceEEEEEecccccccccCCCccchhcccCC--ccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHH
Q 008389 393 QPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANG--WYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVEN 470 (567)
Q Consensus 393 ~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g--~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~ 470 (567)
++++.| +.|||+++|+.++.|||++++.+...+.+| ||+|||+|++++||++++.||.||+||++|++|+|.|||+
T Consensus 367 ~~~~~g--~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~ 444 (562)
T 3ite_A 367 EHVKKG--MAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSE 444 (562)
T ss_dssp CBCCTT--SCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEECTTSCEEEEEEC------------------
T ss_pred CCCCCC--CceEEEEeccccchhhCCCccccccccCCCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHH
Confidence 999998 889999999999999999999888777777 9999999999999999999999999999999999999999
Q ss_pred HHhcC-CCceeeEEEEeecCCCCCcceEEEEEcCCccc--------hhhHHHHHHHHHHHHhcCCCCCCCceeecCc-cc
Q 008389 471 MMYLH-PAVLEASVVARADERWGESPCAFVTLKPEVDK--------SNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LP 540 (567)
Q Consensus 471 ~l~~~-~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~--------~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP 540 (567)
+|.++ +.+.+++|++.+++..++..++.++...+... .......++|+++++++|+.|++|+.|++++ ||
T Consensus 445 ~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~y~~P~~i~~v~~lP 524 (562)
T 3ite_A 445 VIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRGELRWINENYKEINNSLRQACEQTLPAYMVPDFIIPISFIP 524 (562)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhcCCCceeEEEEEecCCCCcceEEEEEEecccccccccccccccchhhHHHHHHHHHHhhCCcccCCcEEEEeccCC
Confidence 99998 77888888888888777766666655443211 1112234689999999999999999999888 99
Q ss_pred CC-CCccccHHHHHHHHHHcC
Q 008389 541 KT-ATGKIQKHVLRAKAKEMG 560 (567)
Q Consensus 541 ~t-~~GKi~r~~l~~~~~~~~ 560 (567)
+| ++||++|++|++++.+..
T Consensus 525 ~t~~~GKi~r~~L~~~~~~~~ 545 (562)
T 3ite_A 525 LRDTSAKTDAKALEHMFHTLS 545 (562)
T ss_dssp ---------------------
T ss_pred CCCCCCcchHHHHHHHHhccC
Confidence 98 899999999999988654
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-72 Score=599.52 Aligned_cols=508 Identities=19% Similarity=0.176 Sum_probs=405.5
Q ss_pred hhcccCHHHHHhhhhhcCCCceeEEEC----CccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhh
Q 008389 16 NYMALTPLWFLDRAATVHPTRTSVVHG----STRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVP 91 (567)
Q Consensus 16 ~~~~~t~~~~l~~~a~~~p~~~a~~~~----~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~ 91 (567)
..+.+|+.++|++++.++||++|+++. ++++||+||.++++++|+.|.+.|+++||+|+++++|++++++++|||+
T Consensus 7 ~~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~ 86 (590)
T 3kxw_A 7 YLQCQSLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCL 86 (590)
T ss_dssp HHTCSSHHHHHHHHHHHCTTSEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred hcCcccHHHHHHHHHHhCCCCeEEEEEcCCeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHH
Confidence 356789999999999999999999874 4899999999999999999999999999999999999999999999999
Q ss_pred hcCCeeeeccccC---ChHHHHHHHhccCceEEEEcccchHHHHHHH-HHHhhhcCCCCCCCeEEEecCCCCCcccchhc
Q 008389 92 MAGAVLNAVNIRL---NAPTIAFLLGHSASAVIMVDQEYFKLAEEAL-KIMEEKSNGRFKPPLLIVIGDESCDPKDLKYA 167 (567)
Q Consensus 92 ~~G~~~v~i~~~~---~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 167 (567)
++|++++|+++.. +.+++.++++.+++++++++.+....+.... .... ....+..+.......
T Consensus 87 ~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~------ 153 (590)
T 3kxw_A 87 YAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNP-------KFLKIPAIALESIEL------ 153 (590)
T ss_dssp HTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CC-------EETTEEEEEGGGCCG------
T ss_pred HhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcc-------cccccceeechhccc------
Confidence 9999999999987 4578999999999999999887655433211 0000 011111111110000
Q ss_pred cCCChHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccc
Q 008389 168 LGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFH 247 (567)
Q Consensus 168 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~ 247 (567)
. ...........++++++|+|||||||.||+|.+||+++.+.+......++++++|++++.+|++|
T Consensus 154 -------------~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h 219 (590)
T 3kxw_A 154 -------------N-RSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHH 219 (590)
T ss_dssp -------------G-GGGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTS
T ss_pred -------------c-ccccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCc
Confidence 0 00001112356789999999999999999999999999999999989999999999999999999
Q ss_pred hhhhHH-HHHHhhhcCeeEEeccC----CHHHHHHHHHhhCceEeeeCcHHHHHHHcCCC---CCCcCCCCchhhhhccC
Q 008389 248 CNGWCY-TWSLAALCGTSICLRQV----TAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPS---EDTILPLPHVVHVNTAG 319 (567)
Q Consensus 248 ~~g~~~-~~~~~~~g~~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~---~~~~~~l~~lr~i~~~G 319 (567)
..|+.. .+..+..|+++++...+ ++..+++.|+++++|++.++|..+..+++... ..... ++++|.+++||
T Consensus 220 ~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~-l~~lr~~~~gg 298 (590)
T 3kxw_A 220 DMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLD-LSSWVTAFNGA 298 (590)
T ss_dssp HHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCC-CTTCCEEEECS
T ss_pred chhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCC-chhhHHHhhCC
Confidence 999986 45555667777766654 78999999999999999999999999876532 22233 88999999999
Q ss_pred CCCCHHHHHHHHhc-------CCeeeeccCCccCcCCcccccCCCCCCC----------------CChhhhhhhhccCCc
Q 008389 320 AAPPPSVLHAMSQK-------GFHVTHTYGLSETYGPSTVCAWKPEWDS----------------LPPETQARMKARQGV 376 (567)
Q Consensus 320 ~~l~~~~~~~~~~~-------~~~i~~~YG~tE~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~G~ 376 (567)
+++++++.+.+.+. +.++++.||+||++++++.......+.. ...........++|.
T Consensus 299 ~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 378 (590)
T 3kxw_A 299 EPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGN 378 (590)
T ss_dssp SCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCE
T ss_pred CCCCHHHHHHHHHHHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCC
Confidence 99999999998854 3479999999999887765432211000 000112234578899
Q ss_pred eeccccceeEeeCCCCCccCCCCCceEEEEEecccccccccCCCccchhcccC-------C--ccccCceEEEeCCCcEE
Q 008389 377 RFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFAN-------G--WYHTGDLGVKHPDNYIE 447 (567)
Q Consensus 377 ~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~-------g--~~~TGDl~~~~~~g~l~ 447 (567)
|+++ ++|+|++++++++.| +.|||+|+|+.++.|||++++.+...|.+ | ||+|||+|+++ +|.++
T Consensus 379 p~~~---v~i~d~~~~~~~~~g--~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~ 452 (590)
T 3kxw_A 379 PIQE---VKIIDPDTLIPCDFD--QVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELY 452 (590)
T ss_dssp ESSE---EEEECTTTCCBCCTT--BCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEE
T ss_pred CCCC---eEEEcCCCCcCCCCC--CEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEE
Confidence 9987 688999889999998 88999999999999999999999999853 5 99999999999 99999
Q ss_pred EeccccceeeeCceecchHHHHHHH-hcCCCce--eeEEEEeecCCCCCcceEEEEEcCCc-cchhhHHHHHHHHHHHHh
Q 008389 448 IKDRSKDIIISGGENISSVEVENMM-YLHPAVL--EASVVARADERWGESPCAFVTLKPEV-DKSNEQQLAEDIMKFCRA 523 (567)
Q Consensus 448 ~~GR~~d~i~~~G~~v~~~~iE~~l-~~~~~i~--~~~v~~~~~~~~g~~~~~~v~~~~~~-~~~~~~~~~~~l~~~l~~ 523 (567)
+.||.||+||++|++|+|.+||++| ..+|.|. +++|++.+++. ++.++++++..++. ...+. +++.+++++
T Consensus 453 ~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~~~~~~----~~l~~~l~~ 527 (590)
T 3kxw_A 453 VTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEH-EYKLTVMCEVKNRFMDDVAQ----DNLFNEIFE 527 (590)
T ss_dssp EEEESSCHHHHHHHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEETT-EEEEEEEEEESCTTCCHHHH----HHHHHHHHH
T ss_pred EEcCccceEEECCEecCHHHHHHHHHhcCccccCccEEEEEecCCC-CceEEEEEEeccccccchhH----HHHHHHHHH
Confidence 9999999999999999999999999 7889998 79999998876 78889999888764 23444 455566666
Q ss_pred cCCC-CCCCc-eeecC--c-ccCCCCccccHHHHHHHHHHcCCc
Q 008389 524 KMPA-YWVPK-SIVFG--P-LPKTATGKIQKHVLRAKAKEMGPV 562 (567)
Q Consensus 524 ~l~~-~~~p~-~i~~~--~-lP~t~~GKi~r~~l~~~~~~~~~~ 562 (567)
+++. +..|. .+.++ + ||+|++||++|++|++++.+....
T Consensus 528 ~l~~~~~~p~~~i~~v~~~~lP~t~sGKi~R~~L~~~~~~~~~~ 571 (590)
T 3kxw_A 528 LVYENHQLEVHTIVLIPLKAMPHTTSGKIRRNFCRKHLLDKTLP 571 (590)
T ss_dssp HHHHHHSCCCCEEEEEETTCSCCCSCHHHHHHHHHHHHHHTCSC
T ss_pred HHHHHcCCceeEEEEECCCccCcCCCcHHHHHHHHHHHHcCCCc
Confidence 6553 55664 44443 4 999999999999999999887654
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-71 Score=632.52 Aligned_cols=492 Identities=22% Similarity=0.272 Sum_probs=415.1
Q ss_pred cccchhhhcccCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHh
Q 008389 10 LPKNAANYMALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFG 89 (567)
Q Consensus 10 ~~~~~~~~~~~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA 89 (567)
++....+.+..|+.++|++++.++||++|+++.++++||+||+++++++|+.|.+.|+++|++|+|++++++++++++||
T Consensus 454 ~~~~~~~~~~~~l~~~~~~~~~~~p~~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~la 533 (1304)
T 2vsq_A 454 LNPPAQAHETKPLTYWFKEAVNANPDAPALTYSGQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILG 533 (1304)
T ss_dssp TSCCCCCCCCCCHHHHHHHHHHHCTTSEEEESSSCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHhCCCCeEEEECCeeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHH
Confidence 44445556678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCeeeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccC
Q 008389 90 VPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALG 169 (567)
Q Consensus 90 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 169 (567)
|+++|++++|++|.++.+++.++++.+++++++++.+....+.. +. .....+.+++..
T Consensus 534 ilkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~----~~-------~~~~~~~~~~~~----------- 591 (1304)
T 2vsq_A 534 VLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAE----LP-------YTGTTLFIDDQT----------- 591 (1304)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTT----CC-------CCSEEEESSCGG-----------
T ss_pred HHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhc----cC-------CCCcEEEecccc-----------
Confidence 99999999999999999999999999999999998765432110 00 112223222110
Q ss_pred CChHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchh
Q 008389 170 RGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCN 249 (567)
Q Consensus 170 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~ 249 (567)
. ... ....+.....++++++++|||||||.||||.++|+++.+. ......++++++|+++...|++|..
T Consensus 592 ----~----~~~--~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~~~~~~fd~ 660 (1304)
T 2vsq_A 592 ----R----FEE--QASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLSVSNYAFDA 660 (1304)
T ss_dssp ----G----GGS--CSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEECSCTTSTH
T ss_pred ----c----ccc--ccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEEECCccHHH
Confidence 0 000 1111223356789999999999999999999999998865 4444567889999999999999988
Q ss_pred hhHHHHHHhhhcCeeEEecc---CCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHH
Q 008389 250 GWCYTWSLAALCGTSICLRQ---VTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSV 326 (567)
Q Consensus 250 g~~~~~~~~~~g~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~ 326 (567)
+....+.+++.|+++++.+. .++..+.+.|+++++|++.++|+++..+.+... .. ++++|.+++|||+++++.
T Consensus 661 ~~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~---~~-~~~lr~~~~gGe~l~~~~ 736 (1304)
T 2vsq_A 661 FTFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGE---DW-MKGLRCILFGGERASVPH 736 (1304)
T ss_dssp HHHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCS---HH-HHTCSEEEEESSCCCHHH
T ss_pred HHHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhch---hc-CCCccEEEEecCCCCHHH
Confidence 88888888889999888854 689999999999999999999999999986422 12 678999999999999999
Q ss_pred HHHHHhc--CCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEE
Q 008389 327 LHAMSQK--GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGE 404 (567)
Q Consensus 327 ~~~~~~~--~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Ge 404 (567)
.+.+.+. ++++++.||+||++..++....... ........+|.|++++ .+.|+|++ ++++|.| +.||
T Consensus 737 ~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~-------~~~~~~~~iG~p~~~~-~~~i~d~~-~~~~p~G--~~GE 805 (1304)
T 2vsq_A 737 VRKALRIMGPGKLINCYGPTEGTVFATAHVVHDL-------PDSISSLPIGKPISNA-SVYILNEQ-SQLQPFG--AVGE 805 (1304)
T ss_dssp HHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCC-------CSSCSSCCCBEECTTE-EEEEECTT-SCBCCTT--CCEE
T ss_pred HHHHHHhCCCCEEEEeEChhHHhHHheeeeccCc-------cccCCCCCCceeeCCC-EEEEECCC-cCCCCCC--CceE
Confidence 9988754 5799999999999877665432210 0111235789999999 89999987 8999998 8899
Q ss_pred EEEecccccccccCCCccchhccc-------CCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCC
Q 008389 405 IVMSGNVVMKGYLKNPKANEETFA-------NGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPA 477 (567)
Q Consensus 405 i~v~~~~~~~gy~~~~~~~~~~~~-------~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~ 477 (567)
|+|+|+.+++||+++++.+.++|. ++||+|||+|++++||.++++||.||+||++|++|+|.|||++|.++|+
T Consensus 806 l~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~p~ 885 (1304)
T 2vsq_A 806 LCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPG 885 (1304)
T ss_dssp EEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHSSS
T ss_pred EEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhCCC
Confidence 999999999999999999999883 3599999999999999999999999999999999999999999999999
Q ss_pred ceeeEEEEeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHH
Q 008389 478 VLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKA 556 (567)
Q Consensus 478 i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~ 556 (567)
|.+++|++.++...+..++++++..... +. ++++++++++||.|++|..+++++ ||+|+|||++|++|++..
T Consensus 886 V~~a~V~~~~~~~~~~~l~a~vv~~~~~---~~----~~l~~~l~~~Lp~ymvP~~~~~l~~lP~t~~GKidR~~L~~~~ 958 (1304)
T 2vsq_A 886 VKDAVVVADRHESGDASINAYLVNRTQL---SA----EDVKAHLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLLPKPD 958 (1304)
T ss_dssp CCEEEEEEECCSSSCCEEEEEEECSSSS---CH----HHHHHHHHHHSCGGGSCSEEEEESCCCCCSSCSSCCSCCCCCC
T ss_pred CceEEEEEEecCCCCEEEEEEEeCCCCC---CH----HHHHHHHHHhChHhhhccEEEEecccCCCCCcccCHhhcCCcc
Confidence 9999999999888888999999876532 33 678999999999999999999888 999999999999987643
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-59 Score=483.74 Aligned_cols=409 Identities=19% Similarity=0.203 Sum_probs=314.1
Q ss_pred cccccchhhhcccCHHHHHhhhhhcCCCceeEEECC---------ccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcC
Q 008389 8 DDLPKNAANYMALTPLWFLDRAATVHPTRTSVVHGS---------TRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAP 78 (567)
Q Consensus 8 ~~~~~~~~~~~~~t~~~~l~~~a~~~p~~~a~~~~~---------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~ 78 (567)
...+....+++.+|+.++|+++++++||++|+++.+ +++||+||.++++++|+.|++.|+ +||+|+++++
T Consensus 12 ~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~ 90 (480)
T 3t5a_A 12 SGLVPRGSHMSVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAP 90 (480)
T ss_dssp ------------CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECC
T ss_pred CCCCcccCCCCcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcC
Confidence 344556778889999999999999999999999865 899999999999999999999996 9999999999
Q ss_pred ChHHHHHHHHhhhhcCCeeeeccc---cCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEec
Q 008389 79 NIPAIYEAHFGVPMAGAVLNAVNI---RLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIG 155 (567)
Q Consensus 79 ~~~~~~~~~lA~~~~G~~~v~i~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 155 (567)
|++++++++|||+++|++++|+++ .++.+++.++++.++++++|++.+....+.+........ ....++.++
T Consensus 91 n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 165 (480)
T 3t5a_A 91 QGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGE-----SPPSIIEVD 165 (480)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC-----------CCEEEEGG
T ss_pred CcHHHHHHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccc-----cccceeEec
Confidence 999999999999999999999999 788999999999999999999998776655432211100 112333332
Q ss_pred CCCCCcccchhccCCChHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCC
Q 008389 156 DESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNE 235 (567)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~ 235 (567)
.... ............++++++|+|||||||.||+|.+||+++.+++......+++..
T Consensus 166 ~~~~----------------------~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~ 223 (480)
T 3t5a_A 166 LLDL----------------------DAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADT 223 (480)
T ss_dssp GSCT----------------------TCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTT
T ss_pred cccc----------------------ccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhcccc
Confidence 2110 001111123356789999999999999999999999999999988888888777
Q ss_pred ------CcEEEEecCccchhhhHHH-HHHhhhcCeeEEecc----CCHHHHHHHHHhhCceEeeeCcHHHHHHHcC----
Q 008389 236 ------GAVYLWTLPMFHCNGWCYT-WSLAALCGTSICLRQ----VTAKAVYSAIAKYGVTHFCAAPVVLNSIVNA---- 300 (567)
Q Consensus 236 ------~d~~~~~~p~~~~~g~~~~-~~~~~~g~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~---- 300 (567)
+|++++.+|++|.+|+... +.+++.|+++++..+ .++..+++.++++++| +..+|+++..++..
T Consensus 224 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~ 302 (480)
T 3t5a_A 224 DGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTD 302 (480)
T ss_dssp TTCCCTTEEEEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCT
T ss_pred ccCCCCCCeEEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCc
Confidence 9999999999999998754 555666777777654 3899999999999999 88999998888753
Q ss_pred CCCCCcCCCCchhhhhccCCCCCHHHHHHHHhc-------CCeeeeccCCccCcCCcccccCCCCCCCC--Chh------
Q 008389 301 PSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQK-------GFHVTHTYGLSETYGPSTVCAWKPEWDSL--PPE------ 365 (567)
Q Consensus 301 ~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~-------~~~i~~~YG~tE~~~~~~~~~~~~~~~~~--~~~------ 365 (567)
....... +++||.+++||+++++++.+++.+. ++++++.||+||+++.++........... ...
T Consensus 303 ~~~~~~~-l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 381 (480)
T 3t5a_A 303 DDMAGRD-LGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGH 381 (480)
T ss_dssp GGGTTCC-CTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTB
T ss_pred ccccccc-hhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCc
Confidence 2222333 8999999999999999999999854 24799999999998776654332110000 000
Q ss_pred ------hhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEecccccccccCCCccchhcc------------
Q 008389 366 ------TQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETF------------ 427 (567)
Q Consensus 366 ------~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~------------ 427 (567)
.......++|.|++ + +++|+|++++++++.| +.|||+|+|+.++.|||++++.+.+.|
T Consensus 382 ~~~~~~~~~~~~~~~G~p~~-~-~~~ivd~~~g~~~~~g--~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~ 457 (480)
T 3t5a_A 382 AKPCAGGGATSLISYMLPRS-P-IVRIVDSDTCIECPDG--TVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTP 457 (480)
T ss_dssp CCCCCSSSCEEEECEECCSS-S-EEEEEETTTTEECCTT--BCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCC
T ss_pred eeecCCCCcceeeecCcccC-C-EEEEEcCCCCcCCCCC--CEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCC
Confidence 00234568999999 8 8999999989999998 899999999999999999999999998
Q ss_pred cCCccccCceEEEeCCCcEEEecc
Q 008389 428 ANGWYHTGDLGVKHPDNYIEIKDR 451 (567)
Q Consensus 428 ~~g~~~TGDl~~~~~~g~l~~~GR 451 (567)
.+|||+|||+|+++ ||+|+++||
T Consensus 458 ~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 458 EGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp CCCBEEEEEEEEEE-TTEEEECC-
T ss_pred CCCeeeccceeeEE-CCEEEEeCC
Confidence 46799999999997 999999998
|
| >4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-53 Score=419.70 Aligned_cols=315 Identities=19% Similarity=0.188 Sum_probs=266.5
Q ss_pred cCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhhHHHHHHhhhcCeeEEeccCCHH
Q 008389 194 EWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAALCGTSICLRQVTAK 273 (567)
Q Consensus 194 ~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~~~~~ 273 (567)
.+++++|+|||||||.||+|.+||+++.+++......++++++|++++.+|++|.+|+...+.++..|+++++..+. .
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~--~ 113 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPT--A 113 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCC--S
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcc--c
Confidence 36899999999999999999999999999999999999999999999999999999999888889999998887542 2
Q ss_pred HHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHHHhcCCeeeeccCCccCcCCcccc
Q 008389 274 AVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVC 353 (567)
Q Consensus 274 ~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~ 353 (567)
..++.|+++++|++.++|+++..+++...... . ++++|.+++||+++++++.+++.++++++++.||+||+++.++..
T Consensus 114 ~~~~~i~~~~~t~~~~~P~~l~~ll~~~~~~~-~-l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~~~YG~TEt~~~~~~~ 191 (358)
T 4gs5_A 114 NPLAGLDHADFDFVAMVPMQLQSILENSATSG-Q-VDRLGKVLLGGAPVNHALAMQISDLAMPVYQSYGMTETVSHVALK 191 (358)
T ss_dssp CTTTTCSSCCCSEEEECHHHHHHHHHCTTTGG-G-GGGGCSEEECSSCCCHHHHHHHHTCSSCEEEEEECGGGSSEEEEE
T ss_pred cHHHHHHHhCCeEEEcChHHHHHhhccccccc-c-CCcceEEEEcccCCCchheecccccCceEEeccccccccceeecc
Confidence 23567899999999999999999998765332 3 899999999999999999999999999999999999998776654
Q ss_pred cCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEecccccccccCCCccchhcccCCccc
Q 008389 354 AWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANGWYH 433 (567)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~ 433 (567)
.... ...+.+|.+.|++ .+.+. +.||++++|+.. .+|||+
T Consensus 192 ~~~~-----------~~~g~~~~~~pgv-~~~~~-------------~~Gel~~~g~~~---------------~~g~~~ 231 (358)
T 4gs5_A 192 ALNG-----------PEASELYVFLPGI-QYGVD-------------ERGCLHISGAVT---------------NGQTVQ 231 (358)
T ss_dssp ECSS-----------TTCCSCEEECTTC-EEEEC-------------TTSEEEEESGGG---------------TTCCEE
T ss_pred cccc-----------cccceeeccCCCe-EEEec-------------CcCceEEecccc---------------cCccee
Confidence 3221 1236678888887 55542 348999988643 368999
Q ss_pred cCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHH---hcCCCceeeEEE-EeecCCCCCcceEEEEEcCCccchh
Q 008389 434 TGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMM---YLHPAVLEASVV-ARADERWGESPCAFVTLKPEVDKSN 509 (567)
Q Consensus 434 TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l---~~~~~i~~~~v~-~~~~~~~g~~~~~~v~~~~~~~~~~ 509 (567)
|||+|+++++| ++++||.||+||++|++|+|.+||+.| .++|.|.+++|+ +.+++..|+.++++|+.... ...
T Consensus 232 TGDlg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~--~~~ 308 (358)
T 4gs5_A 232 TNDLVEIHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMP--EAL 308 (358)
T ss_dssp EEEEEEECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCC--HHH
T ss_pred cCCccccccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCCC--CcC
Confidence 99999999888 667799999999999999999999877 467999998876 67788888899998875443 222
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHHHHc
Q 008389 510 EQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKEM 559 (567)
Q Consensus 510 ~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~ 559 (567)
. ++|+++++++|+.|++|+.|++++ ||+|++||++|++|++++.+.
T Consensus 309 ~----~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~l~e~ 355 (358)
T 4gs5_A 309 T----ERLTAEIRSRVSTYENPKHIYFAKAFAKTQTDKIDKRATFQKLSDS 355 (358)
T ss_dssp H----HHHHHHHHHHSCGGGSCSCEEEESSCCBCTTSCBCHHHHHHHTC--
T ss_pred H----HHHHHHHHhhCCCCCCceEEEEECCcCCCCCCChhHHHHHHHhhhh
Confidence 2 689999999999999999999888 999999999999999988764
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-48 Score=393.12 Aligned_cols=329 Identities=19% Similarity=0.220 Sum_probs=257.7
Q ss_pred CCc-CceEEEEecCCCCCCCCeeeeccHHHHHHHHHHH---HHhccCCCcEEEEecCccchhhhH-HHHHHhhhcCeeEE
Q 008389 192 QDE-WQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVA---LIWGMNEGAVYLWTLPMFHCNGWC-YTWSLAALCGTSIC 266 (567)
Q Consensus 192 ~~~-~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~---~~~~~~~~d~~~~~~p~~~~~g~~-~~~~~~~~g~~~~~ 266 (567)
.+. +++++++|||||||.||+|.++|+++.+...... ..+++.++|++++..|+.|..+.. ..+.+...|++++.
T Consensus 82 ~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~ 161 (436)
T 3qov_A 82 GDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVP 161 (436)
T ss_dssp SCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEEC
T ss_pred CCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEe
Confidence 455 8999999999999999999999999977766553 345889999999999986655544 55556677888777
Q ss_pred eccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcC-CCCchhhhhccCCCCCHHHHHHHHhc-CCeeeeccCCc
Q 008389 267 LRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTIL-PLPHVVHVNTAGAAPPPSVLHAMSQK-GFHVTHTYGLS 344 (567)
Q Consensus 267 ~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~-~l~~lr~i~~~G~~l~~~~~~~~~~~-~~~i~~~YG~t 344 (567)
....++..+++.|+++++|++.++|+++..|++........ .++++|.+++|||++++++.+.+.+. ++++++.||+|
T Consensus 162 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~T 241 (436)
T 3qov_A 162 AAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMT 241 (436)
T ss_dssp CCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEG
T ss_pred CCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcch
Confidence 77889999999999999999999999999998764333221 26789999999999999999999965 99999999999
Q ss_pred cCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEecccccccccCCCccch
Q 008389 345 ETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANE 424 (567)
Q Consensus 345 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~ 424 (567)
|+++.+....... ....+.+.+++ .++|+|++++++++.| +.|||+++|. +.
T Consensus 242 E~~~~~~~~~~~~-------------~~g~~~~~~~~-~v~i~d~~~g~~~~~g--~~Gel~v~~~------------~~ 293 (436)
T 3qov_A 242 EMNGPGVAFECQE-------------QNGMHFWEDCY-LVEIIDPETGEPVPEG--EIGELVLTTL------------DR 293 (436)
T ss_dssp GGTEEEEEEECTT-------------CSSEEECTTTE-EEEEECTTTCSBCSTT--CCEEEEEEES------------SC
T ss_pred hhcCCeeEEecCC-------------CCeeEEccCce-EEEEEECCCCCCCCCC--CceEEEEecc------------Cc
Confidence 9965422221110 01244455678 8999998889999998 7899999983 23
Q ss_pred hcccCCccccCceEEEeCCC------c---EEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeecCCCCCcc
Q 008389 425 ETFANGWYHTGDLGVKHPDN------Y---IEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESP 495 (567)
Q Consensus 425 ~~~~~g~~~TGDl~~~~~~g------~---l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~ 495 (567)
..|.++||+|||+|+++++| + +++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.+
T Consensus 294 ~~~~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l 373 (436)
T 3qov_A 294 EMMPLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEM 373 (436)
T ss_dssp CSSCCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEE
T ss_pred CCceEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEE
Confidence 44568999999999999998 5 69999999999999999999999999999999999999999988878899
Q ss_pred eEEEEEcCCccchhhHHHHHHHHHHHHhcCCCC-CCCceeecCc---ccCCCCccccHHH
Q 008389 496 CAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAY-WVPKSIVFGP---LPKTATGKIQKHV 551 (567)
Q Consensus 496 ~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~p~~i~~~~---lP~t~~GKi~r~~ 551 (567)
+++|++. +. ..+...-.+++++.++++|+.+ ..|..+.+++ ||+|+ ||++|..
T Consensus 374 ~a~v~~~-~~-~~~~~~~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~-GKi~R~~ 430 (436)
T 3qov_A 374 IVEVELS-DL-STDNYIELEKIRRDIIRQLKDEILVTPKVKLVKKGSLPQSE-GKAVRVK 430 (436)
T ss_dssp EEEEEEC-TT-CCCCHHHHHHHHHHHHHHHHHHHSSCCEEEEECTTCCC--------CEE
T ss_pred EEEEEEc-Cc-cccchhhHHHHHHHHHHHHHHhcCCceEEEEeCCCcccCcC-CcceEEE
Confidence 9999998 54 2221111245666666666666 6777777654 99999 9998853
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-47 Score=391.51 Aligned_cols=330 Identities=17% Similarity=0.188 Sum_probs=266.0
Q ss_pred CCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHH---HhccCCCcEEEEecCc-cchhhhHHHHHHhhhcCeeEEe
Q 008389 192 QDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVAL---IWGMNEGAVYLWTLPM-FHCNGWCYTWSLAALCGTSICL 267 (567)
Q Consensus 192 ~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~---~~~~~~~d~~~~~~p~-~~~~g~~~~~~~~~~g~~~~~~ 267 (567)
..++++++++|||||||.||+|.++|+++......... .++++++|++++.+|+ .|..++...+.+...|++++..
T Consensus 89 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 168 (443)
T 2y4o_A 89 VPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPM 168 (443)
T ss_dssp SCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECC
T ss_pred CChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEEC
Confidence 46789999999999999999999999998776554433 5788999999999998 5677777777777888888887
Q ss_pred ccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcC-CCCchhhhhccCCCCCHHHHHHHHh-cCCeeeeccCCcc
Q 008389 268 RQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTIL-PLPHVVHVNTAGAAPPPSVLHAMSQ-KGFHVTHTYGLSE 345 (567)
Q Consensus 268 ~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~-~l~~lr~i~~~G~~l~~~~~~~~~~-~~~~i~~~YG~tE 345 (567)
...++..+++.|+++++|++.++|+++..|++........ .++++|.+++||+++++++.+.+.+ +++++++.||+||
T Consensus 169 ~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE 248 (443)
T 2y4o_A 169 SGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSE 248 (443)
T ss_dssp CSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETT
T ss_pred CCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchh
Confidence 7889999999999999999999999999998754322222 1578999999999999999999985 4999999999999
Q ss_pred CcCC-cccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEecccccccccCCCccch
Q 008389 346 TYGP-STVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANE 424 (567)
Q Consensus 346 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~ 424 (567)
+++. +...... . ....+.+.+++ .++|+|+++|++++.| +.|||+++|. +.
T Consensus 249 ~~g~~~~~~~~~-~------------~~g~~~~~~~~-~~~i~d~~~g~~~~~G--~~Gel~v~~~------------t~ 300 (443)
T 2y4o_A 249 VMGPGVACECVE-T------------KDGPVIWEDHF-YPEIIDPVTGEVLPDG--SQGELVFTSL------------TK 300 (443)
T ss_dssp TTEEEEEEECTT-T------------CCSEEECTTTE-EEEEECTTTCCBCCTT--CCEEEEEEES------------SC
T ss_pred hcCCeEEeccCC-C------------CCceEEccCCe-EEEEEcCCCCCCCCCC--CceEEEEeCC------------Cc
Confidence 8543 2221110 0 00123344677 8999998889999988 7899999983 22
Q ss_pred hcccCCccccCceEEEeCC-CcE-----EEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeecCCCCCcceEE
Q 008389 425 ETFANGWYHTGDLGVKHPD-NYI-----EIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAF 498 (567)
Q Consensus 425 ~~~~~g~~~TGDl~~~~~~-g~l-----~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~ 498 (567)
..|.++||+|||+|+++++ |++ ++.||.||+|+++|++|+|.+||++|.++|+|.++++++.+++..++.++++
T Consensus 301 ~~~p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~ 380 (443)
T 2y4o_A 301 EAMPVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLA 380 (443)
T ss_dssp SSSCCSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEE
T ss_pred ccChhheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEE
Confidence 3456789999999999999 986 8999999999999999999999999999999999999988877667889999
Q ss_pred EEEcC--Cc--cchhhHHHHHHHHHHHHhcCCCC-CCCceeecC--c-ccCCCCccccHHHHH
Q 008389 499 VTLKP--EV--DKSNEQQLAEDIMKFCRAKMPAY-WVPKSIVFG--P-LPKTATGKIQKHVLR 553 (567)
Q Consensus 499 v~~~~--~~--~~~~~~~~~~~l~~~l~~~l~~~-~~p~~i~~~--~-lP~t~~GKi~r~~l~ 553 (567)
|++.+ +. ...+. ++++++++++|+.+ ..|..+.++ + ||+|++||++|+..+
T Consensus 381 v~~~~~~~~~~~~~~~----~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~~~ 439 (443)
T 2y4o_A 381 VELRSEAAASVTDGER----AALARELQHRIKTMVGVSSGVTVLAAGGIPATATGKARRVIDR 439 (443)
T ss_dssp EEECHHHHTTCCHHHH----HHHHHHHHHHHHHHTCCCCEEEEECTTCSCCCTTSCCCSEEEC
T ss_pred EEECCcccccchhhHH----HHHHHHHHHHHHHHhCCceEEEEeCCCcccCccCCcceEEEec
Confidence 99875 32 12233 56777777777765 477777665 3 999999999997543
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-47 Score=389.69 Aligned_cols=328 Identities=18% Similarity=0.149 Sum_probs=267.1
Q ss_pred CCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHH---HHhccCCCcEEEEecCc-cchhhhHHHHHHhhhcCeeEE
Q 008389 191 PQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVA---LIWGMNEGAVYLWTLPM-FHCNGWCYTWSLAALCGTSIC 266 (567)
Q Consensus 191 ~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~---~~~~~~~~d~~~~~~p~-~~~~g~~~~~~~~~~g~~~~~ 266 (567)
...++++++++|||||||.||+|.++|+++........ ..++++++|++++.+|+ +|..++...+.+...|++++.
T Consensus 86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 34668999999999999999999999999877665443 35788999999999998 677777777777788888887
Q ss_pred eccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcC-CCCchhhhhccCCCCCHHHHHHHHh-cCCeeeeccCCc
Q 008389 267 LRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTIL-PLPHVVHVNTAGAAPPPSVLHAMSQ-KGFHVTHTYGLS 344 (567)
Q Consensus 267 ~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~-~l~~lr~i~~~G~~l~~~~~~~~~~-~~~~i~~~YG~t 344 (567)
....++..+++.|+++++|++.++|+++..|++........ .++++|.+++||+++++++.+.+.+ +++++++.||+|
T Consensus 166 ~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~T 245 (437)
T 2y27_A 166 FGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLS 245 (437)
T ss_dssp CCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEET
T ss_pred CCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCch
Confidence 77789999999999999999999999999998754322222 1478999999999999999999985 599999999999
Q ss_pred cCcCC-cccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEecccccccccCCCccc
Q 008389 345 ETYGP-STVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKAN 423 (567)
Q Consensus 345 E~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~ 423 (567)
|+++. ++...... ....+.+.+++ .++|+|+++|++++.| +.|||+++|. +
T Consensus 246 E~~g~~~~~~~~~~-------------~~g~~~~~~~~-~~~i~d~~~g~~~~~g--~~Gel~v~~~------------t 297 (437)
T 2y27_A 246 EVMGPGVASECVET-------------KDGPTIWEDHF-YPEIIDPETGEVLPDG--ELGELVFTSL------------T 297 (437)
T ss_dssp TTTEEEEEECCTTT-------------CSSCEECTTTE-EEEEECTTTCCBCCTT--CCEEEEEEES------------S
T ss_pred hhcCCeeEEecCCC-------------CCceeEccCce-EEEEEcCCCCCCCCCC--CccEEEEecC------------C
Confidence 98543 22211100 01234455677 8999998889999988 7899999983 2
Q ss_pred hhcccCCccccCceEEEeC-CCcE-----EEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeecCCCCCcceE
Q 008389 424 EETFANGWYHTGDLGVKHP-DNYI-----EIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCA 497 (567)
Q Consensus 424 ~~~~~~g~~~TGDl~~~~~-~g~l-----~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~ 497 (567)
...|.++||+|||+|++++ +|++ ++.||.||+|+++|++|+|.+||++|.++|+|.++++++.+++..++.+++
T Consensus 298 ~~~~~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a 377 (437)
T 2y27_A 298 KEALPIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTL 377 (437)
T ss_dssp CSSSCCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEE
T ss_pred cCCchhheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEE
Confidence 3345689999999999998 6985 899999999999999999999999999999999999998887777788999
Q ss_pred EEEEcCCccc--hhhHHHHHHHHHHHHhcCCCC-CCCceeecC--c-ccCCCCccccHHH
Q 008389 498 FVTLKPEVDK--SNEQQLAEDIMKFCRAKMPAY-WVPKSIVFG--P-LPKTATGKIQKHV 551 (567)
Q Consensus 498 ~v~~~~~~~~--~~~~~~~~~l~~~l~~~l~~~-~~p~~i~~~--~-lP~t~~GKi~r~~ 551 (567)
+|++.++... .+. ++++++++++|+.+ ..|..+.++ + ||+|+ ||++|..
T Consensus 378 ~v~~~~~~~~~~~~~----~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~-GKi~r~~ 432 (437)
T 2y27_A 378 NVEPCPETAPDTAAI----QVAKQALAYDIKSLIGVTAVINVLPVNGIERSV-GKARRVV 432 (437)
T ss_dssp EECBCTTTTTCHHHH----HHHHHHHHHHHHHHHCCCEEEEECCTTCSCCCS-SSCCCEE
T ss_pred EEEECCCccchhhhH----HHHHHHHHHHHHHhcCCceEEEEeCCCCccCCC-CcceEEE
Confidence 9998776421 233 56777788888777 588777776 3 99999 9999864
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-30 Score=256.30 Aligned_cols=236 Identities=16% Similarity=0.124 Sum_probs=179.2
Q ss_pred CCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHH---HHhccCCCcEEEEecCc-cchhhhHHHHHHhhhcCeeEEe
Q 008389 192 QDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVA---LIWGMNEGAVYLWTLPM-FHCNGWCYTWSLAALCGTSICL 267 (567)
Q Consensus 192 ~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~---~~~~~~~~d~~~~~~p~-~~~~g~~~~~~~~~~g~~~~~~ 267 (567)
..++++++++|||||||.||+|.++|+++........ ..+++.++|++++.+|+ +|..|+...+.+...|+ .++.
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~-~v~~ 166 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGG-MFFS 166 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTS-CEEC
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCC-EEEC
Confidence 3567889999999999999999999999988877543 45578899999999999 99999988777777777 6666
Q ss_pred ccCCHH-----------------------HHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCH
Q 008389 268 RQVTAK-----------------------AVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPP 324 (567)
Q Consensus 268 ~~~~~~-----------------------~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~ 324 (567)
..+++. .+++.|+++++|++.++|+++..|++........ ++++|.+++|||++++
T Consensus 167 ~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~-~~~lr~i~~gGe~l~~ 245 (369)
T 3hgu_A 167 IDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQM-KQSLAQITLGGTELNL 245 (369)
T ss_dssp CCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHH-HHHCSEEEEESSCCCH
T ss_pred ccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccc-cCCeeEEEECCccCCH
Confidence 667777 8888999999999999999999998874322233 6789999999999999
Q ss_pred HHHHHHH-hc--CCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCce------eccccceeEeeCCCCCcc
Q 008389 325 SVLHAMS-QK--GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVR------FIGLEKLDVIDTRTQQPV 395 (567)
Q Consensus 325 ~~~~~~~-~~--~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~------~~~~~~~~i~d~~~~~~~ 395 (567)
++++.+. +. ++++++.||+||+++++..+.. .++|.| ++++ .++|+|+++++++
T Consensus 246 ~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~----------------~~~G~~~~~~~~~~~~-~v~ivD~~~g~~v 308 (369)
T 3hgu_A 246 DEIKFIASEILPDCEFSASYGSTSALGVSRSLLI----------------TSESQQVIYDSFSPFI-TYDVVDSITAQTV 308 (369)
T ss_dssp HHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB----------------CTTCSSCEEECCTTTE-EEEEECTTTCSBC
T ss_pred HHHHHHHHHhCCCcEEEcccCchhhhcceecccc----------------ccCCCcccccCCCCCe-EEEEECCCCCcCC
Confidence 9999998 66 8999999999999866543321 136778 8898 8999999779999
Q ss_pred CCCCCceEEEEEecccccccccCCCccchhcccCCccccCceEEEeCC--C-------cEEEeccccceeeeCce
Q 008389 396 PADGKTIGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPD--N-------YIEIKDRSKDIIISGGE 461 (567)
Q Consensus 396 ~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~--g-------~l~~~GR~~d~i~~~G~ 461 (567)
+.| +.|||+|++.....-. -+|+|||++...+. | .+..++|.++..++.|.
T Consensus 309 p~G--~~GEl~vt~l~~~~~l-------------~ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 309 EYG--ERGNVIVTHLSPWAFY-------------PRVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp CTT--CEEEEEEEEEETTEEE-------------EEEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred CCC--CceEEEEEEcCccccc-------------ccccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence 998 8999999985321111 13899999988653 2 34566777777776663
|
| >3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.3e-14 Score=114.33 Aligned_cols=96 Identities=20% Similarity=0.306 Sum_probs=74.0
Q ss_pred ccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeecCCCCCcceEEEEEcCCccc--hhhHHHHHHHHHHHHhcCCC
Q 008389 450 DRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDK--SNEQQLAEDIMKFCRAKMPA 527 (567)
Q Consensus 450 GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~--~~~~~~~~~l~~~l~~~l~~ 527 (567)
.|.||+|+++|.+++|.+||++|.++|+|.++++++.++..+++.+.++++..++... ...+++.+++++.+++.+.
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~g- 79 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEIL- 79 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHS-
T ss_pred CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccccchhhhhHHHHHHHHHHHhC-
Confidence 4899999999999999999999999999999999999999889999999998887522 2234556667777766553
Q ss_pred CCCCceeecCc---ccCCCCccccH
Q 008389 528 YWVPKSIVFGP---LPKTATGKIQK 549 (567)
Q Consensus 528 ~~~p~~i~~~~---lP~t~~GKi~r 549 (567)
.+..+.+++ |||| +||++|
T Consensus 80 --v~~~v~~v~~~~lPrt-sGKi~R 101 (109)
T 3lax_A 80 --VTPRVKLVPKGALPKS-EGKAVR 101 (109)
T ss_dssp --SCCEEEEECTTCSCCC----CCC
T ss_pred --CccceEEEcCCeecCC-CCCcch
Confidence 333444442 9998 699987
|
| >4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.3e-08 Score=103.77 Aligned_cols=89 Identities=15% Similarity=0.157 Sum_probs=63.9
Q ss_pred cCCCCCceEEEEEecccccccccCCCccchhcccCCccccCceEEEeC----CCcEEEeccccceeeeCceecchHHHHH
Q 008389 395 VPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHP----DNYIEIKDRSKDIIISGGENISSVEVEN 470 (567)
Q Consensus 395 ~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~----~g~l~~~GR~~d~i~~~G~~v~~~~iE~ 470 (567)
+..| +.+||+++.. .|+|+ |++||+++++. ...+.+.||.++++++.|+++++.+||+
T Consensus 393 Ve~G--~~YelViTt~---~GL~R-------------Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~ 454 (609)
T 4b2g_A 393 VEVG--KEYELVITTY---AGLYR-------------YRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQK 454 (609)
T ss_dssp CCTT--CEEEEEEECT---TSCCS-------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHH
T ss_pred cCCC--CeEEEehhhh---hhhhh-------------eecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHH
Confidence 4455 7899999764 36665 99999999984 4689999999999999999999999999
Q ss_pred HHhcC------CC--ceeeEEEEeecCCCCCcceEEEEEc
Q 008389 471 MMYLH------PA--VLEASVVARADERWGESPCAFVTLK 502 (567)
Q Consensus 471 ~l~~~------~~--i~~~~v~~~~~~~~g~~~~~~v~~~ 502 (567)
++.+. .+ |.|..+....... +..-+++.++.
T Consensus 455 av~~a~~~l~~~g~~l~eft~~~d~~~~-p~Hyv~~wEl~ 493 (609)
T 4b2g_A 455 AVDNASKLLREVNTSVVEYTSFADTKTI-PGHYVIYWELL 493 (609)
T ss_dssp HHHHHHHGGGGTTEEEEEEEEEEECSSS-SCEEEEEEEEE
T ss_pred HHHHHHHhhhccCCeEEEEEEecCCCCC-CCcEEEEEEEe
Confidence 88732 22 5566654332221 22334455654
|
| >4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.78 E-value=3.4e-08 Score=100.37 Aligned_cols=90 Identities=13% Similarity=0.072 Sum_probs=64.7
Q ss_pred cCCCCCceEEEEEecccccccccCCCccchhcccCCccccCceEEEeCC----CcEEEeccccceeeeCceecchHHHHH
Q 008389 395 VPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPD----NYIEIKDRSKDIIISGGENISSVEVEN 470 (567)
Q Consensus 395 ~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~----g~l~~~GR~~d~i~~~G~~v~~~~iE~ 470 (567)
+..| +.+|++++... |.|+ |++||+.+++.- ..+.+.||.++++++.|++++..+||+
T Consensus 388 ve~G--~~YelviTt~~---GL~R-------------Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~ 449 (581)
T 4epl_A 388 VKIG--EEYEVVITNYA---GLYR-------------YRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQL 449 (581)
T ss_dssp CCTT--CEEEEEEESTT---SCSS-------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHH
T ss_pred cCCC--CeEEEEEeecc---ceee-------------EEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHHH
Confidence 4445 78999998753 5554 999999999852 579999999999999999999999999
Q ss_pred HHhcC------C--CceeeEEEEeecCCCCCcceEEEEEcC
Q 008389 471 MMYLH------P--AVLEASVVARADERWGESPCAFVTLKP 503 (567)
Q Consensus 471 ~l~~~------~--~i~~~~v~~~~~~~~g~~~~~~v~~~~ 503 (567)
++.+. . .|.|..+...... ....-+++.++..
T Consensus 450 al~~a~~~l~~~~~~l~eft~~~d~~~-~p~hyv~~wE~~~ 489 (581)
T 4epl_A 450 SVESAAKRLSEEKIEVIDFSSYIDVST-DPGHYAIFWEISG 489 (581)
T ss_dssp HHHHHHHHHHTTTCCEEEEEEEEECSS-SSCEEEEEEEESS
T ss_pred HHHHHHHhhcccCCeEEEEEEecCCCC-CCCcEEEEEeecC
Confidence 98742 2 3667666553222 1223344456643
|
| >4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=2.9e-08 Score=101.26 Aligned_cols=59 Identities=10% Similarity=0.126 Sum_probs=51.4
Q ss_pred ceEEEEEecccccccccCCCccchhcccCCccccCceEEEeC----CCcEEEeccccceeeeCceecchHHHHHHHhcC
Q 008389 401 TIGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHP----DNYIEIKDRSKDIIISGGENISSVEVENMMYLH 475 (567)
Q Consensus 401 ~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~----~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~ 475 (567)
+.+|+++++. .|.|+ |++||+.+++. ...+.|.||.++++++.|++++..+||+++.+.
T Consensus 385 ~~YelViTt~---~GL~R-------------Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~~v~~al~~a 447 (581)
T 4eql_A 385 CTYEPVVTNF---AGLYR-------------MRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVSQA 447 (581)
T ss_dssp CEEEEEEECS---SSCCS-------------EECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHHHHHHHHHHC
T ss_pred ceEEEEEeec---cceee-------------EEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHHHHHHHHHHH
Confidence 7899999875 35554 99999999986 358999999999999999999999999999754
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=91.70 E-value=0.98 Score=44.82 Aligned_cols=101 Identities=18% Similarity=0.148 Sum_probs=78.3
Q ss_pred CCCceeEEEC--C-------ccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCCh--HHHHHHHHhhhhcCCeeeecc
Q 008389 33 HPTRTSVVHG--S-------TRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNI--PAIYEAHFGVPMAGAVLNAVN 101 (567)
Q Consensus 33 ~p~~~a~~~~--~-------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~--~~~~~~~lA~~~~G~~~v~i~ 101 (567)
.++.++++.. + ..+|.+.+...+..++..+...++.++|++...++-+ ...+...++++..|+.+++++
T Consensus 88 ~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 167 (437)
T 2y27_A 88 PQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFG 167 (437)
T ss_dssp CGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCC
T ss_pred ChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCC
Confidence 4566665541 1 4589999998888888888788999999999988853 344556788899999988776
Q ss_pred ccCChHHHHHHHhccCceEEEEcccchHHHHHH
Q 008389 102 IRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEA 134 (567)
Q Consensus 102 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~ 134 (567)
. .+++.+...+++.++.++++.+.....+.+.
T Consensus 168 ~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~ 199 (437)
T 2y27_A 168 G-GQTEKQVQLIQDFRPDIIMVTPSYMLSIADE 199 (437)
T ss_dssp S-CCHHHHHHHHHHHCCSEEEECHHHHHHHHHH
T ss_pred C-CCHHHHHHHHHHhCCCEEEECHHHHHHHHHH
Confidence 5 4788999999999999999988776655543
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=91.20 E-value=1.1 Score=44.47 Aligned_cols=89 Identities=13% Similarity=0.052 Sum_probs=72.5
Q ss_pred ccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCCh--HHHHHHHHhhhhcCCeeeeccccCChHHHHHHHhccCceEE
Q 008389 44 TRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNI--PAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVI 121 (567)
Q Consensus 44 ~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~--~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~v 121 (567)
..+|.+.+...+..++..+...|+.++|++...++-+ ...+...++++..|+.+++++. .+++.+...+++.++.++
T Consensus 110 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l 188 (443)
T 2y4o_A 110 VGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSG-GQTEKQVQLIRDFEPKII 188 (443)
T ss_dssp EEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCS-CCHHHHHHHHHHHCCSEE
T ss_pred EecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCC-CCHHHHHHHHHHhCCcEE
Confidence 4589999998888888888788999999999988853 3445567888899999887765 478899999999999999
Q ss_pred EEcccchHHHHH
Q 008389 122 MVDQEYFKLAEE 133 (567)
Q Consensus 122 i~~~~~~~~~~~ 133 (567)
+..+.....+.+
T Consensus 189 ~~~Ps~~~~l~~ 200 (443)
T 2y4o_A 189 LVTPSYMLNLID 200 (443)
T ss_dssp EECHHHHHHHHH
T ss_pred EECHHHHHHHHH
Confidence 998877665544
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=91.17 E-value=1 Score=44.69 Aligned_cols=99 Identities=9% Similarity=-0.021 Sum_probs=78.5
Q ss_pred CceeEEEC---------CccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCC--hHHHHHHHHhhhhcCCeeeecccc
Q 008389 35 TRTSVVHG---------STRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPN--IPAIYEAHFGVPMAGAVLNAVNIR 103 (567)
Q Consensus 35 ~~~a~~~~---------~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~--~~~~~~~~lA~~~~G~~~v~i~~~ 103 (567)
+.+|++.. +..+|.+.+...+..++..+...++.++|++....+- ....+..+++++..|+.+++.+.
T Consensus 86 ~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~- 164 (436)
T 3qov_A 86 RDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAA- 164 (436)
T ss_dssp HHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCS-
T ss_pred CCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCC-
Confidence 66676542 1458999999988888888888899999999998874 34455567888999999887754
Q ss_pred CChHHHHHHHhccCceEEEEcccchHHHHHH
Q 008389 104 LNAPTIAFLLGHSASAVIMVDQEYFKLAEEA 134 (567)
Q Consensus 104 ~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~ 134 (567)
..++.+...+++.++.+++..+.....+.+.
T Consensus 165 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 195 (436)
T 3qov_A 165 GNSKRQIKFISDFKTTALHAIPSYAIRLAEV 195 (436)
T ss_dssp CCHHHHHHHHHHHTCCEEECCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCEEEECHHHHHHHHHH
Confidence 4778899999999999999988876665543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 567 | ||||
| d1pg4a_ | 643 | e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en | 1e-112 | |
| d1v25a_ | 534 | e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0 | 1e-108 | |
| d1ry2a_ | 640 | e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast | 4e-99 | |
| d1lcia_ | 541 | e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali | 4e-89 | |
| d1amua_ | 514 | e.23.1.1 (A:) Phenylalanine activating domain of g | 9e-80 | |
| d3cw9a1 | 503 | e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc | 2e-76 | |
| d1mdba_ | 536 | e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B | 8e-74 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Score = 345 bits (885), Expect = e-112
Identities = 107/557 (19%), Positives = 210/557 (37%), Gaps = 45/557 (8%)
Query: 26 LDRAATVHPTRTSVVH------GSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPN 79
LDR + RT+++ S ++ + ++ R A+ L I G VAI P
Sbjct: 78 LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 137
Query: 80 IPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEA---LK 136
+P A GAV + + + +A + S+S +++ E +
Sbjct: 138 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKN 197
Query: 137 IMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQ 196
+ + N +++ + D + + + ++ P+ + E
Sbjct: 198 VDDALKNPNVTSVEHVIVLKRTGSDIDWQEG---RDLWWRDLIEKASPEHQPEAMNAE-D 253
Query: 197 SIALGYTSGTTASPKGVVLSHRGAYLMSL-SVALIWGMNEGAVYLWTLPMFHCNGWCYTW 255
+ + YTSG+T PKGV+ + G + + + ++ + G +Y T + G Y
Sbjct: 254 PLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLL 313
Query: 256 SLAALCGTSICL-----RQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSED-TILPL 309
CG + + T + + K+ V AP + +++ +
Sbjct: 314 YGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDR 373
Query: 310 PHVVHVNTAGAAPPPSVLHAMSQK----GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPE 365
+ + + G P +K V T+ +ET G P L
Sbjct: 374 SSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPL--PGAIELKAG 431
Query: 366 TQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNV--VMKGYLKNPKAN 423
+ F G++ ++D P +G T G +V++ + + + +
Sbjct: 432 SA-------TRPFFGVQ-PALVDNEGH---PQEGATEGNLVITDSWPGQARTLFGDHERF 480
Query: 424 EETFA---NGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLE 480
E+T+ Y +GD + D Y I R D++ G + + E+E+ + HP + E
Sbjct: 481 EQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAE 540
Query: 481 ASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-L 539
A+VV G++ A+VTL + S E L ++ + R ++ P + + L
Sbjct: 541 AAVVGIPHAIKGQAIYAYVTLNHGEEPSPE--LYAEVRNWVRKEIGPLATPDVLHWTDSL 598
Query: 540 PKTATGKIQKHVLRAKA 556
PKT +GKI + +LR A
Sbjct: 599 PKTRSGKIMRRILRKIA 615
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Score = 332 bits (851), Expect = e-108
Identities = 162/543 (29%), Positives = 241/543 (44%), Gaps = 38/543 (6%)
Query: 25 FLDRAATVHPTRTSVVHGST----RYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNI 80
FL+RAA + + V T R T+ + YQR RRL L +G+G VA + N
Sbjct: 16 FLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNH 75
Query: 81 PAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEE 140
EA+F VP GAVL+ N RL+ IA++L H+ V++ D L E
Sbjct: 76 FRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIR----- 130
Query: 141 KSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIAL 200
+ A E + + E + +
Sbjct: 131 ----------------GELKTVQHFVVMDEKAPEGYLAYEEALGEEADPVRVPERAACGM 174
Query: 201 GYTSGTTASPKGVVLSHRGAYLMSLSVALI--WGMNEGAVYLWTLPMFHCNGWCYTWSLA 258
YT+GTT PKGVV SHR L SL+ +L+ ++E V L +PMFH N WC ++
Sbjct: 175 AYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAAT 234
Query: 259 ALCGTSICL-RQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNT 317
+ + ++ ++ GVT P V ++ + L + +
Sbjct: 235 LVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTG-HRLKTLRRLVV 293
Query: 318 AGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVR 377
G+A P S++ + G V YGL+ET K +SL E + +KA+ G+
Sbjct: 294 GGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLP 353
Query: 378 FIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETF-ANGWYHTGD 436
+ L V D + PVP DGK +GE+ + G + GY N +A +G++ TGD
Sbjct: 354 IPLVR-LRVADEEGR-PVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGD 411
Query: 437 LGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPC 496
+ V + Y+EIKDR KD+I SGGE ISSV++EN + HP V EA+VVA +W E P
Sbjct: 412 IAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPL 471
Query: 497 AFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAK 555
A V + E E +A + +P + VF +P+T+ GK K LR +
Sbjct: 472 AVVVPRGEKPTP-----EELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQ 526
Query: 556 AKE 558
K
Sbjct: 527 YKN 529
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 312 bits (799), Expect = 4e-99
Identities = 108/558 (19%), Positives = 200/558 (35%), Gaps = 37/558 (6%)
Query: 26 LDRAATVHPTRTSVVHGS------TRYTWLQTYQRCRRLASAL-CKRSIGLGCTVAIIAP 78
+DR A P + +++ T+ + + ++A L + G TVA+ P
Sbjct: 65 VDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMP 124
Query: 79 NIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIM 138
+P + GA+ + V ++ ++ + S V++ E + +
Sbjct: 125 MVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVI--ET 182
Query: 139 EEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSI 198
+ + + + + A + + P D +
Sbjct: 183 KRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPL 242
Query: 199 ALGYTSGTTASPKGVVLSHRGAYLMSLS-VALIWGMNEGAVYLWTLPMFHCNGWCYTWSL 257
L YTSG+T +PKGV S G L +L + + ++ V+ + G Y
Sbjct: 243 FLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYG 302
Query: 258 AALCGTSICLRQVT-----AKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSED-TILPLPH 311
L G + + + T + I ++ VT F AP L + A L
Sbjct: 303 PLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKS 362
Query: 312 VVHVNTAGAAPPPSVLHAMSQK----GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQ 367
+ + + G V S+K + TY +E+ L
Sbjct: 363 LRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHL--------VTPLAGGVT 414
Query: 368 ARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETF 427
F G++ + + ++ + + + + + + KN +T+
Sbjct: 415 PMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTY 474
Query: 428 AN---GWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVV 484
N G+Y TGD K D YI I R D++ G +S+ E+E + P V E +VV
Sbjct: 475 LNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVV 534
Query: 485 ARADERWGESPCAFVTLKPEVDKSNE-----QQLAEDIMKFCRAKMPAYWVPKSIVFGP- 538
D+ G++ AFV LK + S Q + + ++ R + + PK I+
Sbjct: 535 GFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDD 594
Query: 539 LPKTATGKIQKHVLRAKA 556
LPKT +GKI + +LR
Sbjct: 595 LPKTRSGKIMRRILRKIL 612
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Score = 282 bits (723), Expect = 4e-89
Identities = 117/573 (20%), Positives = 211/573 (36%), Gaps = 50/573 (8%)
Query: 4 AKGIDDLPKNAANYMALTPLWFLDRAATVHPTRTSVV-----HGSTRYTWLQTYQRCRRL 58
AK I P T L +A + + H T+ + ++ RL
Sbjct: 1 AKNIKKGPAPFYPLEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRL 60
Query: 59 ASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSAS 118
A A+ + + + + + N + G G + N N + + S
Sbjct: 61 AEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQP 120
Query: 119 AVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKF 178
V+ V ++ + K L I+ D K
Sbjct: 121 TVVFVSKKGLQKILNVQK------------KLPIIQKIIIMDSKTDYQGFQSMYTFVTSH 168
Query: 179 LQTGDPQFDWKP-PQDEWQSIA-LGYTSGTTASPKGVVLSHRGA---YLMSLSVALIWGM 233
L G ++D+ P D ++IA + +SG+T PKGV L HR A + + +
Sbjct: 169 LPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQI 228
Query: 234 NEGAVYLWTLPMFHCNGWCYTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVV 293
L +P H G T + + + + ++ Y + P +
Sbjct: 229 IPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTL 288
Query: 294 LNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQK--GFHVTHTYGLSETYGPST 351
+ + L ++ + + GA V A++++ + YGL+ET
Sbjct: 289 FSFFAKST-LIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAIL 347
Query: 352 VCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNV 411
+ PE D P G E V+D T + + + GE+ + G +
Sbjct: 348 IT---PEGDDKP--------GAVGKVVPFFE-AKVVDLDTGKTLGVN--QRGELCVRGPM 393
Query: 412 VMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVEN 470
+M GY+ NP+A +GW H+GD+ D + I DR K +I G ++ E+E+
Sbjct: 394 IMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELES 453
Query: 471 MMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKM-PAYW 529
++ HP + +A V D+ GE P A V L+ + ++I+ + +++ A
Sbjct: 454 ILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMT-----EKEIVDYVASQVTTAKK 508
Query: 530 VPKSIVFGP-LPKTATGKIQKHVLR---AKAKE 558
+ +VF +PK TGK+ +R KAK+
Sbjct: 509 LRGGVVFVDEVPKGLTGKLDARKIREILIKAKK 541
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Score = 257 bits (658), Expect = 9e-80
Identities = 86/541 (15%), Positives = 172/541 (31%), Gaps = 70/541 (12%)
Query: 25 FLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIY 84
+ + P ++V + + T+ + + +LA ++ IG V I+ ++
Sbjct: 28 LFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLF 87
Query: 85 EAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNG 144
V AG ++I I ++L S + +++ + L
Sbjct: 88 IGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNI---------- 137
Query: 145 RFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTS 204
+E+ + P + YTS
Sbjct: 138 ----------------------QFNGQVEIFEEDTIKIREGTNLHVPSKSTDLAYVIYTS 175
Query: 205 GTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAALCGTS 264
GTT +PKG +L H+G + + + E + + +
Sbjct: 176 GTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASL 235
Query: 265 ICLRQVTAK---AVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAA 321
+ + T I + +T P + + + + + TAG+A
Sbjct: 236 YIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPER-------ILSIQTLITAGSA 288
Query: 322 PPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGL 381
PS+++ ++ + YG +ET + T+ + +
Sbjct: 289 TSPSLVNKW-KEKVTYINAYGPTET----------TICATTWVATKETIGHSVPIGAPIQ 337
Query: 382 EKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFAN-------GWYHT 434
I Q GE+ + G + +GY K P+ + F + Y T
Sbjct: 338 NTQIYIVDENLQLKSVG--EAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKT 395
Query: 435 GDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGES 494
GD D IE R + + G + EVE+++ H + E +V D +
Sbjct: 396 GDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPY 455
Query: 495 PCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLR 553
CA+ + + E + +F ++P Y +P + +P T+ GKI + L
Sbjct: 456 LCAYFVSEKHIP-------LEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLP 508
Query: 554 A 554
Sbjct: 509 E 509
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Score = 248 bits (634), Expect = 2e-76
Identities = 134/540 (24%), Positives = 213/540 (39%), Gaps = 54/540 (10%)
Query: 25 FLDRAATVHPTRTSVV--HGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPA 82
L RAAT P ++ R T + R +A+ L + VA++APN
Sbjct: 7 MLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSAD 66
Query: 83 IYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKS 142
+ A + GAV +N RL + +A L+ ++ + A I + S
Sbjct: 67 VVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVG----RQVADAIFQSGS 122
Query: 143 NGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGY 202
R +I +GD D + Y P + P ++ Q + Y
Sbjct: 123 GAR-----IIFLGDLVRDGEPYSYG----------------PPIED-PQREPAQPAFIFY 160
Query: 203 TSGTTASPKGVVLSHRG--AYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAA- 259
TSGTT PK ++ R + ++ +S + V L +P++H G+ A
Sbjct: 161 TSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALA 220
Query: 260 LCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTI-LPLPHVVHVNTA 318
L GT + + + + + VT A P L+++ A + L L + HV A
Sbjct: 221 LDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFA 280
Query: 319 GAAPPPSVLHAMSQK-GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVR 377
GA P +VL + Q + YG +E + K +
Sbjct: 281 GATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTE--------------MAP 326
Query: 378 FIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDL 437
E V + A+G+ IV + + GYL P+A E +GWY T D+
Sbjct: 327 GFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDV 386
Query: 438 GVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCA 497
V P+ + I R D+IISGGENI E+E ++ P V E V+ AD+RWG+S A
Sbjct: 387 AVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTA 446
Query: 498 FVTLKPEVDKSNEQQLAEDIMKFCRA-KMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAK 555
V + S A+ + FCR+ ++ + PK LPK A K+ + L +
Sbjct: 447 CVVPRLGETLS-----ADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQ 501
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Score = 242 bits (619), Expect = 8e-74
Identities = 119/568 (20%), Positives = 197/568 (34%), Gaps = 49/568 (8%)
Query: 3 MAKGIDDLPKNAANYMALTPLW-------FLDRAATVHPTRTSVVHGSTRYTWLQTYQRC 55
M KG P A W L A + R ++ G+T +++ + R
Sbjct: 1 MLKGFTPWPDELAETYRKNGCWAGETFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRA 60
Query: 56 RRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGH 115
RLA+ K I V + PNI +E F + GA+ + I +
Sbjct: 61 DRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEF 120
Query: 116 SASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEY 175
+ +A ++ Y +L + LK + G E
Sbjct: 121 AEAAAYIIPDAYSGFDYRSLARQVQS------------------KLPTLKNIIVAGEAEE 162
Query: 176 EKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNE 235
L+ + P L + G+T K + +H + ++
Sbjct: 163 FLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDH 222
Query: 236 GAVYLWTLPMFHCNGWCYTWSLAALCG--TSICLRQVTAKAVYSAIAKYGVTHFCAAPVV 293
VYL LPM H L L + + + I + VT P +
Sbjct: 223 STVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPL 282
Query: 294 LNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVC 353
++A S + + GA + + F T G
Sbjct: 283 AMVWMDAASSRRDDL-SSLQVLQVGGAKFSAEAARRV-KAVFGCTLQQVFGMAEGLVNYT 340
Query: 354 AWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVM 413
+ + QG ++ V D + V G ++ G +
Sbjct: 341 RLDDPEEIIVN--------TQGKPMSPYDESRVWDD-HDRDVKPG--ETGHLLTRGPYTI 389
Query: 414 KGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMM 472
+GY K + N +F +G+Y TGD+ D YI ++ R+KD I GGE +++ EVEN +
Sbjct: 390 RGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHL 449
Query: 473 YLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAK-MPAYWVP 531
HPAV +A++V+ D+ GE C F+ + E K A ++ F R + + AY +P
Sbjct: 450 LAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPK------AAELKAFLRERGLAAYKIP 503
Query: 532 KSIVFGP-LPKTATGKIQKHVLRAKAKE 558
+ F P+T GK+ K LR E
Sbjct: 504 DRVEFVESFPQTGVGKVSKKALREAISE 531
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 567 | |||
| d1pg4a_ | 643 | Acetyl-CoA synthetase {Salmonella enterica [TaxId: | 100.0 | |
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 100.0 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 100.0 | |
| d1ry2a_ | 640 | Acetyl-CoA synthetase {Baker's yeast (Saccharomyce | 100.0 | |
| d1amua_ | 514 | Phenylalanine activating domain of gramicidin synt | 100.0 | |
| d1mdba_ | 536 | Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil | 100.0 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 100.0 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 82.66 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=2.2e-77 Score=635.15 Aligned_cols=516 Identities=20% Similarity=0.283 Sum_probs=422.3
Q ss_pred cCHH-HHHhhhhhcCCCceeEEECC------ccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhh
Q 008389 20 LTPL-WFLDRAATVHPTRTSVVHGS------TRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPM 92 (567)
Q Consensus 20 ~t~~-~~l~~~a~~~p~~~a~~~~~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~ 92 (567)
+++. .+|+++++.+||++|+++.+ +++||+||.+++.++|+.|+++|+++||+|+++++|++++++++|||++
T Consensus 71 ~N~~~n~ldrh~~~~~d~~Ali~~~~~~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~iv~~lA~~~ 150 (643)
T d1pg4a_ 71 LNLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACAR 150 (643)
T ss_dssp ECHHHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhCCCCEEEEEEecCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHHHHHHHHHHH
Confidence 5564 67888999999999999742 6799999999999999999999999999999999999999999999999
Q ss_pred cCCeeeeccccCChHHHHHHHhccCceEEEEcccchH------HHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchh
Q 008389 93 AGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFK------LAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKY 166 (567)
Q Consensus 93 ~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 166 (567)
+|++++|+++.++++++.+++++++++++|+++.... ........+.. ........++.+.........
T Consensus 151 ~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~i~~~~~~~~~~~--- 225 (643)
T d1pg4a_ 151 IGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKN--PNVTSVEHVIVLKRTGSDIDW--- 225 (643)
T ss_dssp HTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTS--TTCCSCCEEEEECSSCCCCCC---
T ss_pred hCeEEEecCCCCCHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhc--cccccceEEEEeccCCccccc---
Confidence 9999999999999999999999999999999765321 11111111111 111245566666654322210
Q ss_pred ccCCChHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHH-HHHHhccCCCcEEEEecCc
Q 008389 167 ALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLS-VALIWGMNEGAVYLWTLPM 245 (567)
Q Consensus 167 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~-~~~~~~~~~~d~~~~~~p~ 245 (567)
.......+........+... ....+++++++|+|||||||.||||+++|++++..... ....++++++|++++..|+
T Consensus 226 -~~~~~~~~~~~~~~~~~~~~-~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~~p~ 303 (643)
T d1pg4a_ 226 -QEGRDLWWRDLIEKASPEHQ-PEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADV 303 (643)
T ss_dssp -CBTTEEEHHHHHTTSCSCCC-CCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCT
T ss_pred -ccccchhhhhhhcccCcccC-CCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhhCCCCCCEEEEeCCh
Confidence 11122334444444333332 23457789999999999999999999999997665444 4456789999999999999
Q ss_pred cchhhhHHHH-HHhhhcCeeEEecc----CCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCC--CCcCCCCchhhhhcc
Q 008389 246 FHCNGWCYTW-SLAALCGTSICLRQ----VTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSE--DTILPLPHVVHVNTA 318 (567)
Q Consensus 246 ~~~~g~~~~~-~~~~~g~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~--~~~~~l~~lr~i~~~ 318 (567)
+|++|+...+ ..++.|++++++.. +++..+++.|+++++|+++++|++++.|++.... ...+ +++||.++++
T Consensus 304 ~~~~g~~~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~d-l~sLr~i~~~ 382 (643)
T d1pg4a_ 304 GWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTD-RSSLRILGSV 382 (643)
T ss_dssp TSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCC-CTTCCEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcchhccccC-CCceEEEEEE
Confidence 9999987654 45677888887643 4789999999999999999999999999887543 2333 8999999999
Q ss_pred CCCCCHHHHHHHHhc----CCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCc
Q 008389 319 GAAPPPSVLHAMSQK----GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQP 394 (567)
Q Consensus 319 G~~l~~~~~~~~~~~----~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~ 394 (567)
|+++++++.+++.+. ++++++.||+||+++++...... ......+++|.|++|+ +++|+|++ |++
T Consensus 383 G~pl~~~~~~~~~~~~g~~~~~i~~~yG~TE~g~~~~~~~~~---------~~~~~~gs~G~p~~g~-~v~ivd~~-g~~ 451 (643)
T d1pg4a_ 383 GEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPG---------AIELKAGSATRPFFGV-QPALVDNE-GHP 451 (643)
T ss_dssp SSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTT---------TCCBCTTCCBSBCTTC-CEEEECTT-CCB
T ss_pred eCCCCHHHHHHHHHHhCCCCceEEEeechhhccceEEecCCC---------ccCCCCCccccccCCC-EEEEECCC-CCC
Confidence 999999999998754 57899999999998776643211 1123457899999999 89999987 899
Q ss_pred cCCCCCceEEEEEecc--cccccccCCCccchhcc---cCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHH
Q 008389 395 VPADGKTIGEIVMSGN--VVMKGYLKNPKANEETF---ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVE 469 (567)
Q Consensus 395 ~~~~~~~~Gei~v~~~--~~~~gy~~~~~~~~~~~---~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE 469 (567)
++.+ +.|||+|+|+ +++.||+++++.+...+ .+|||+|||+|++++||+++++||+||+||++|++|+|.|||
T Consensus 452 ~~~g--~~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~ik~~G~ri~p~eIE 529 (643)
T d1pg4a_ 452 QEGA--TEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIE 529 (643)
T ss_dssp CCSS--EEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHH
T ss_pred CCCC--ceEEEEEecCCCcccccccCChhhchhhhcccCCCeEEcCCEEEECCCceEEEecccccEEEECCEEECHHHHH
Confidence 9888 8999999994 78899999988776554 589999999999999999999999999999999999999999
Q ss_pred HHHhcCCCceeeEEEEeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCcccc
Q 008389 470 NMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQ 548 (567)
Q Consensus 470 ~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~ 548 (567)
++|.+||+|.+|+|++.+++..|+.+++||+++++. ..+ .++.++|+++++++|+++++|+.|++++ ||+|++||++
T Consensus 530 ~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vv~~~~~-~~~-~~~~~~i~~~~~~~L~~~~vP~~i~~v~~lP~T~sGKi~ 607 (643)
T d1pg4a_ 530 SALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGE-EPS-PELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIM 607 (643)
T ss_dssp HHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTC-CCC-HHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBC
T ss_pred HHHHhCCCcceEEEEEEECCCCCeEEEEEEEECCCC-CCC-HHHHHHHHHHHHhhCCcccCccEEEEECCCCCCCCcCcc
Confidence 999999999999999999999899999999999876 322 3445789999999999999999999888 9999999999
Q ss_pred HHHHHHHHHH
Q 008389 549 KHVLRAKAKE 558 (567)
Q Consensus 549 r~~l~~~~~~ 558 (567)
|+.||+++..
T Consensus 608 R~~Lr~~~~~ 617 (643)
T d1pg4a_ 608 RRILRKIAAG 617 (643)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHhcC
Confidence 9999999865
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.9e-76 Score=619.94 Aligned_cols=513 Identities=32% Similarity=0.477 Sum_probs=406.4
Q ss_pred cccCHHHHHhhhhhcCCCceeEEECC----ccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhc
Q 008389 18 MALTPLWFLDRAATVHPTRTSVVHGS----TRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMA 93 (567)
Q Consensus 18 ~~~t~~~~l~~~a~~~p~~~a~~~~~----~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~ 93 (567)
.++|++++|+++++++||++|+++.. +++||+||++++.++|+.|.+.|+++||+|+++++|++++++++|||+++
T Consensus 9 ~~~~l~~~l~~~a~~~pd~~av~~~~~g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~ 88 (534)
T d1v25a_ 9 EELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGM 88 (534)
T ss_dssp CCCCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHcCCCeEEEEecCCceEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence 36799999999999999999999854 46999999999999999999999999999999999999999999999999
Q ss_pred CCeeeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChH
Q 008389 94 GAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAV 173 (567)
Q Consensus 94 G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 173 (567)
|++++|++|.++.+++.++++.+++++++++.............+. ....++.......... .
T Consensus 89 G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~----------~ 151 (534)
T d1v25a_ 89 GAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELK-------TVQHFVVMDEKAPEGY----------L 151 (534)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCS-------SCCEEEESSSCCCTTC----------E
T ss_pred CcEEEecCCCCCHHHHHHHHHhhccccccccchhhhhHHHHhhccc-------ccceeEEeeccccccc----------c
Confidence 9999999999999999999999999999999988877665544333 3444444443322111 0
Q ss_pred HHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHH--HHhccCCCcEEEEecCccchhhh
Q 008389 174 EYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVA--LIWGMNEGAVYLWTLPMFHCNGW 251 (567)
Q Consensus 174 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~--~~~~~~~~d~~~~~~p~~~~~g~ 251 (567)
.... . ...........++++++++|||||||.||+|.++|.+++..+.... ..+.+..++++++.+|++|..++
T Consensus 152 ~~~~-~---~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~ 227 (534)
T d1v25a_ 152 AYEE-A---LGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAW 227 (534)
T ss_dssp EHHH-H---CCSCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHH
T ss_pred cccc-c---ccccccccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhcccccccccccccccchhhhccc
Confidence 0110 1 1111122345678899999999999999999999999987654443 33467789999999999999999
Q ss_pred HHHHHHhhhcCeeEEec-cCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHH
Q 008389 252 CYTWSLAALCGTSICLR-QVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAM 330 (567)
Q Consensus 252 ~~~~~~~~~g~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~ 330 (567)
...+...+.|++.++.. .+++..+...++++++|++.++|+++..++......... ++++|.+++||++++++..+++
T Consensus 228 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~-~~~lr~~~~gG~~~~~~~~~~~ 306 (534)
T d1v25a_ 228 CLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHR-LKTLRRLVVGGSAAPRSLIARF 306 (534)
T ss_dssp THHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCC-CSSCCEEEECSSCCCHHHHHHH
T ss_pred cccceeeeecceeeeccccccccccchhhhhccccccccCchhhhhhhhhhcccccc-ccceeEEEEecCCCCHHHHHHH
Confidence 99999999999888874 478999999999999999999999999998765555555 8999999999999999999999
Q ss_pred HhcCCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEecc
Q 008389 331 SQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGN 410 (567)
Q Consensus 331 ~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~ 410 (567)
++.+.++++.||+||++++++.+..................+++|.|+||+ +++|+|++ ++.++.+.++.|||+++|+
T Consensus 307 ~~~~~~i~~~yG~te~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~-~~~i~d~~-~~~~~~~~~~~Gel~v~g~ 384 (534)
T d1v25a_ 307 ERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLV-RLRVADEE-GRPVPKDGKALGEVQLKGP 384 (534)
T ss_dssp HHTTCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTC-EEEEECTT-SCBCCSSSCCCEEEEEEST
T ss_pred HHhCCeeeeeccccccccceeecccCccccccCccccccccccceeccCCc-EEEEECCC-CCCCCCCCCeeEEEEEcCC
Confidence 999999999999999998888766555555556666667788999999999 89999987 8898887668999999999
Q ss_pred cccccccCCCccchhcc-cCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeecC
Q 008389 411 VVMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADE 489 (567)
Q Consensus 411 ~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~ 489 (567)
+++.||+++++.+...| .+|||+|||+|++++||.+++.||.+|+||++|++|+|.+||++|.++|+|.+++|++.+++
T Consensus 385 ~v~~gY~~~~~~t~~~~~~dg~~~TGDlg~~~~~G~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~V~~a~v~~~~~~ 464 (534)
T d1v25a_ 385 WITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHP 464 (534)
T ss_dssp TSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECS
T ss_pred cccceecCChhhhhhhcccCCCCccCceeEECCCccEEEecccccEEEECCEEECHHHHHHHHHhCCCcceEEEEEEECC
Confidence 99999999999888877 78999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHHHHc
Q 008389 490 RWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKEM 559 (567)
Q Consensus 490 ~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~ 559 (567)
..++.++|+|+++.+. ...+ +.++..++++|++|++|..|++++ ||+|++|||+|++||++|+..
T Consensus 465 ~~~~~l~a~vv~~~~~-~~~~----~~~~~~~~~~l~~~~~P~~i~~~~~lP~t~~GKi~R~~lr~~~~~~ 530 (534)
T d1v25a_ 465 KWQERPLAVVVPRGEK-PTPE----ELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKNY 530 (534)
T ss_dssp SSSEEEEECC------------------------CCCTTTSCSBC--------------CCTTHHHHSTTS
T ss_pred CCCeEEEEEEEeCCCC-CCHH----HHHHHHHHhcCCcCCCccEEEEECCCCCCCCccccHHHHHHHHHhh
Confidence 9999999999887654 2222 233445788899999999999888 999999999999999998653
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=100.00 E-value=6.4e-75 Score=609.81 Aligned_cols=512 Identities=20% Similarity=0.273 Sum_probs=424.0
Q ss_pred cchhhhcccCHHHHHhhhhhcC---CCceeEEECC--ccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHH
Q 008389 12 KNAANYMALTPLWFLDRAATVH---PTRTSVVHGS--TRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEA 86 (567)
Q Consensus 12 ~~~~~~~~~t~~~~l~~~a~~~---p~~~a~~~~~--~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~ 86 (567)
.+..+.++.|+.++|.+.++++ |+++|+.+.+ +++||+||++++.++|+.|+++|+++||+|+++++|+++++++
T Consensus 9 ~p~~p~~~~t~~~~l~~~~~~~~~~P~~~a~~d~~~~~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~e~~v~ 88 (541)
T d1lcia_ 9 APFYPLEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMP 88 (541)
T ss_dssp CCSSCCCSSCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCSSTHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHhhCCCCCeEEEEeCCCCeEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHH
Confidence 3345556689999999999887 7778888753 6899999999999999999999999999999999999999999
Q ss_pred HHhhhhcCCeeeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchh
Q 008389 87 HFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKY 166 (567)
Q Consensus 87 ~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 166 (567)
+|||+++|++++|+++.++.+++.++++.++++++|++++..+.+.+....++ ....++.++......
T Consensus 89 ~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~----- 156 (541)
T d1lcia_ 89 VLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLP-------IIQKIIIMDSKTDYQ----- 156 (541)
T ss_dssp HHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCT-------TCCEEEETTCSSCBT-----
T ss_pred HHHHHHhCeEEEecCCCCCHHHHHHHHHhccceEEeeeccccccchhcccccc-------ccceeeeecCCcccc-----
Confidence 99999999999999999999999999999999999999999888888777666 566666665542211
Q ss_pred ccCCChHHHHHHHhc----C--CCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHh---ccCCCc
Q 008389 167 ALGRGAVEYEKFLQT----G--DPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIW---GMNEGA 237 (567)
Q Consensus 167 ~~~~~~~~~~~~l~~----~--~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~---~~~~~d 237 (567)
....+...... . .....+.....++++++++|||||||.||+|.++|++++.........+ .+.+++
T Consensus 157 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~~ 232 (541)
T d1lcia_ 157 ----GFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDT 232 (541)
T ss_dssp ----TBEEHHHHHHHHSCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTC
T ss_pred ----ccchhhhhhhhhccccccccccCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhcccccccccc
Confidence 11122222211 1 1122223345668899999999999999999999999987766655443 567899
Q ss_pred EEEEecCccchhhhHHHHHHhhhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhc
Q 008389 238 VYLWTLPMFHCNGWCYTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNT 317 (567)
Q Consensus 238 ~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~ 317 (567)
++++.+|++|..++...+.....++..+.....+.......+..+++|.+..+|..+..++......... +++++.+++
T Consensus 233 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~-~~~l~~v~~ 311 (541)
T d1lcia_ 233 AILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYD-LSNLHEIAS 311 (541)
T ss_dssp EEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSCGGGSC-CTTCCEEEC
T ss_pred cccccccccccccccccccccccccccccccccccchhHHHHhhhhccccccCccccccccccccccccc-cccceEEEe
Confidence 9999999999999999999999999988888899999999999999999999999999999887776666 899999999
Q ss_pred cCCCCCHHHHHHHHhc-C-CeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCcc
Q 008389 318 AGAAPPPSVLHAMSQK-G-FHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPV 395 (567)
Q Consensus 318 ~G~~l~~~~~~~~~~~-~-~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~ 395 (567)
||+++++...+++.+. + ..+++.||+||+++.++...... ...+++|+|+|++ +++|+|+++++++
T Consensus 312 gG~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-----------~~~~svG~p~~~~-~~~i~d~d~~~~~ 379 (541)
T d1lcia_ 312 GGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGD-----------DKPGAVGKVVPFF-EAKVVDLDTGKTL 379 (541)
T ss_dssp TTCCCCHHHHHHHHHHTTCSCCBCEECCGGGSSCSEECCCC--------------CCCCBEECTTC-EEEEECTTTCCBC
T ss_pred cccccccccccccccccCCceeeecCCccccCceEEecCccc-----------CCCCccccccCCC-EEEEEECCCCcCC
Confidence 9999999999999854 4 57899999999988877653321 2346899999999 8999999999999
Q ss_pred CCCCCceEEEEEecccccccccCCCccchhcc-cCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhc
Q 008389 396 PADGKTIGEIVMSGNVVMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYL 474 (567)
Q Consensus 396 ~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~ 474 (567)
+.| +.|||+|+|+.++.||+++++.+...+ .+|||+|||+|+++++|.+++.||.+|+||++|++|+|.+||++|.+
T Consensus 380 ~~g--~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~ 457 (541)
T d1lcia_ 380 GVN--QRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQ 457 (541)
T ss_dssp CTT--CCEEEEEESTTSCSEETTBHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC-----CEEETTEEECHHHHHHHHHT
T ss_pred CCC--CeEEEEEccCccCCeeCCChhhhhhcccCCccccCCCeeEEcCCeEEEEeeeecCEEEECCEEECHHHHHHHHHh
Confidence 998 789999999999999999888777666 57899999999999999999999999999999999999999999999
Q ss_pred CCCceeeEEEEeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCC-CCceeecCc-ccCCCCccccHHHH
Q 008389 475 HPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYW-VPKSIVFGP-LPKTATGKIQKHVL 552 (567)
Q Consensus 475 ~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~-~p~~i~~~~-lP~t~~GKi~r~~l 552 (567)
+|+|.+|+|++.+++..|++++++|+++++. ..+. ++++++++++++++. .|..+++++ ||+|++|||+|++|
T Consensus 458 ~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~-~~~~----~~l~~~~~~~l~~~~~~p~~i~~v~~lP~t~~GKi~r~~l 532 (541)
T d1lcia_ 458 HPNIFDAGVAGLPDDDAGELPAAVVVLEHGK-TMTE----KEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKI 532 (541)
T ss_dssp STTEEEEEEEEEEETTTEEEEEEEEEECTTC-CCCH----HHHHHHHHHHSCGGGSCTTEEEEESSCCC-----CCHHHH
T ss_pred CCCccEEEEEEEECCCCCEEEEEEEEECCCC-CCCH----HHHHHHHHHhCCccccCCcEEEEeCCCCcCCCcCccHHHH
Confidence 9999999999999988899999999998876 5555 678889999998775 688888888 99999999999999
Q ss_pred HHHHHHc
Q 008389 553 RAKAKEM 559 (567)
Q Consensus 553 ~~~~~~~ 559 (567)
|+++.+.
T Consensus 533 ~~~~~~~ 539 (541)
T d1lcia_ 533 REILIKA 539 (541)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998875
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.1e-74 Score=613.84 Aligned_cols=521 Identities=21% Similarity=0.264 Sum_probs=412.6
Q ss_pred cCH-HHHHhhhhhcCCCceeEEECC------ccccHHHHHHHHHHHHHHHH-HccCCCCCEEEEEcCChHHHHHHHHhhh
Q 008389 20 LTP-LWFLDRAATVHPTRTSVVHGS------TRYTWLQTYQRCRRLASALC-KRSIGLGCTVAIIAPNIPAIYEAHFGVP 91 (567)
Q Consensus 20 ~t~-~~~l~~~a~~~p~~~a~~~~~------~~~Ty~el~~~~~~lA~~L~-~~g~~~gd~V~l~~~~~~~~~~~~lA~~ 91 (567)
+++ .++|+++++++||++|+++.+ +++||+||.+++.++|+.|+ ++|+++||+|+++++|++++++++|||+
T Consensus 58 lN~~~n~ldr~a~~~pd~~Ali~~~~~~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e~~~~~lA~~ 137 (640)
T d1ry2a_ 58 LNACYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAIS 137 (640)
T ss_dssp ECHHHHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhCCCCEEEEEEecCCCCeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHhc
Confidence 355 678899999999999999732 68999999999999999997 6799999999999999999999999999
Q ss_pred hcCCeeeeccccCChHHHHHHHhccCceEEEEcccchHH-----HHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchh
Q 008389 92 MAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKL-----AEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKY 166 (567)
Q Consensus 92 ~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 166 (567)
++|++++|+++.++++++.++++.+++++++++...... ........ ............+.........
T Consensus 138 ~~Gav~vpi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--- 211 (640)
T d1ry2a_ 138 RIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDA---LRETPGVRHVLVYRKTNNPSVA--- 211 (640)
T ss_dssp HTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHH---TTSCTTCCEEEEECSSCCSSCC---
T ss_pred cCceEeecCCCCCCHHHHHHHHHhhhccccccchhhhhccchhhhHHHHHhh---hhhhcccceeeeeccccccccc---
Confidence 999999999999999999999999999999998753211 11111111 1111133333333322111100
Q ss_pred ccCCChHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHH-HHhccCCCcEEEEecCc
Q 008389 167 ALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVA-LIWGMNEGAVYLWTLPM 245 (567)
Q Consensus 167 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~-~~~~~~~~d~~~~~~p~ 245 (567)
................. ......+..++++++|+|||||||.||||+++|++++.+..... ..++++++|++++.+|+
T Consensus 212 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~~~~~~d~~l~~~pl 290 (640)
T d1ry2a_ 212 FHAPRDLDWATEKKKYK-TYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDI 290 (640)
T ss_dssp CCSSSEEEHHHHHTTSC-SCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCT
T ss_pred ccccccccccccccccc-cccccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhhcCCCcccceeeccch
Confidence 00111112222222222 22233345678999999999999999999999999877665544 45688999999999999
Q ss_pred cchhhhHHHHH-HhhhcCeeEEecc----CCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCC--CCcCCCCchhhhhcc
Q 008389 246 FHCNGWCYTWS-LAALCGTSICLRQ----VTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSE--DTILPLPHVVHVNTA 318 (567)
Q Consensus 246 ~~~~g~~~~~~-~~~~g~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~--~~~~~l~~lr~i~~~ 318 (567)
+|++|+.+.+. ++..|++++++.. +++..+++.|+++++|++.++|++++.|.+.... ...+ +++||.+++|
T Consensus 291 ~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~-l~sLr~v~~g 369 (640)
T d1ry2a_ 291 GWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHS-LKSLRCLGSV 369 (640)
T ss_dssp TSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCC-CTTCCEEEEC
T ss_pred hhhhhHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhccccccccCC-CCceEEEEEe
Confidence 99999875554 5666777777643 3789999999999999999999999999876543 2333 8999999999
Q ss_pred CCCCCHHHHHHHHhc----CCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCc
Q 008389 319 GAAPPPSVLHAMSQK----GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQP 394 (567)
Q Consensus 319 G~~l~~~~~~~~~~~----~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~ 394 (567)
|+++++++.+++.+. .+++++.||+||++.......... ......+++|.|++++ +++|+|++++..
T Consensus 370 G~~l~~~~~~~~~~~~g~~~~~i~~~yg~te~~~~~~~~~~~~--------~~~~~~gs~G~p~~g~-~~~i~d~~~~~~ 440 (640)
T d1ry2a_ 370 GEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGG--------VTPMKPGSASFPFFGI-DAVVLDPNTGEE 440 (640)
T ss_dssp SSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTT--------CCCCCTTCCCEECTTC-CEEEECSSSTTC
T ss_pred cccCcHHHHHHHHHhcCCCcceEEeeecccccccccccccCCC--------cCCCCCcccccccCCc-eEEEEeCCCCcc
Confidence 999999999999854 357999999999987665433221 1223457899999999 899999987666
Q ss_pred cCCCCCceEEEEEec--ccccccccCCCccchhcc---cCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHH
Q 008389 395 VPADGKTIGEIVMSG--NVVMKGYLKNPKANEETF---ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVE 469 (567)
Q Consensus 395 ~~~~~~~~Gei~v~~--~~~~~gy~~~~~~~~~~~---~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE 469 (567)
++... ..|||++++ |.++.|||++++.+.+.| .+|||+|||+|++|+||+++++||+||+||++|++|+|.+||
T Consensus 441 ~~~~~-~~Gel~i~~~~p~~~~gy~~~~e~t~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~~I~p~eIE 519 (640)
T d1ry2a_ 441 LNTSH-AEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIE 519 (640)
T ss_dssp EECSS-CEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHH
T ss_pred cCCCC-ceEEEEEEecCCCcccccccCHHHHHhhhccCCCCeEEcCCceeECCCCCEEEEEcCCCEEEECCEEECHHHHH
Confidence 55543 679999998 589999999999888776 359999999999999999999999999999999999999999
Q ss_pred HHHhcCCCceeeEEEEeecCCCCCcceEEEEEcCCccch-----hhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCC
Q 008389 470 NMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKS-----NEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTA 543 (567)
Q Consensus 470 ~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~-----~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~ 543 (567)
++|.+||+|.+|+|++.+++..|+.++++|+++++.... ..+++.++++++++++|++|++|+.|++++ ||+|+
T Consensus 520 ~~l~~~p~V~~a~Vvg~~d~~~ge~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~~~~~L~~~~~P~~i~~v~~lP~T~ 599 (640)
T d1ry2a_ 520 AAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTR 599 (640)
T ss_dssp HHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCT
T ss_pred HHHHhCCCccEEEEEEEECCCCCeEEEEEEEEcCCCCccccchHHHHHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCC
Confidence 999999999999999999999999999999998875221 124566789999999999999999999988 99999
Q ss_pred CccccHHHHHHHHHH
Q 008389 544 TGKIQKHVLRAKAKE 558 (567)
Q Consensus 544 ~GKi~r~~l~~~~~~ 558 (567)
+|||+|++||+++..
T Consensus 600 sGKi~R~~Lr~~~~~ 614 (640)
T d1ry2a_ 600 SGKIMRRILRKILAG 614 (640)
T ss_dssp TSCBCHHHHHHSCC-
T ss_pred CcCccHHHHHHHHhC
Confidence 999999999998754
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Probab=100.00 E-value=1.6e-71 Score=580.01 Aligned_cols=486 Identities=19% Similarity=0.257 Sum_probs=411.1
Q ss_pred cccchhhhc-ccCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHH
Q 008389 10 LPKNAANYM-ALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHF 88 (567)
Q Consensus 10 ~~~~~~~~~-~~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~l 88 (567)
++..++++| +.|+.++|+++|+++||++|+++.++++||+||+++++++|+.|+++|+++||+|+++++|++++++++|
T Consensus 12 ~~~~~~~~~~~~tl~~l~~~~a~~~Pd~~Al~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~l 91 (514)
T d1amua_ 12 VNNTKAEYPRDKTIHQLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGIL 91 (514)
T ss_dssp TTCCCCCCCTTCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred hcCCCCCCCCCCcHHHHHHHHHHhCCCCeEEEECCeeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHH
Confidence 344556666 5899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCeeeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhcc
Q 008389 89 GVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYAL 168 (567)
Q Consensus 89 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 168 (567)
||+++|++++|+++.++.+++.++++.++++++|++....+.+... .............
T Consensus 92 a~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~------------~~~~~~~~~~~~~--------- 150 (514)
T d1amua_ 92 AVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNI------------QFNGQVEIFEEDT--------- 150 (514)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTS------------CCCSEEEECCCST---------
T ss_pred HHHHhCcEEEEeCCCCCHHHHHHHHhccCCcEEEEehhhhhhhhhh------------ccccccccccccc---------
Confidence 9999999999999999999999999999999999998876654321 1111111111110
Q ss_pred CCChHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccch
Q 008389 169 GRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHC 248 (567)
Q Consensus 169 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~ 248 (567)
...........+..++++++++|||||||.||+|.+||.++..........+....++++++..|++|.
T Consensus 151 -----------~~~~~~~~~~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~ 219 (514)
T d1amua_ 151 -----------IKIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFD 219 (514)
T ss_dssp -----------TTTSCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTST
T ss_pred -----------ccccccccCCCCCCcccceEEEEccCCCCCcccccccccccccccccccccccccccccccceeccccc
Confidence 001111223345667899999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHhhhcCeeEEecc---CCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHH
Q 008389 249 NGWCYTWSLAALCGTSICLRQ---VTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPS 325 (567)
Q Consensus 249 ~g~~~~~~~~~~g~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~ 325 (567)
.++...+..++.+++.+.... .+...+++.+..+.++.+...|...... .... +.+++.++++|++++++
T Consensus 220 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-~~~l~~~~~~G~~~~~~ 292 (514)
T d1amua_ 220 ASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHL------DPER-ILSIQTLITAGSATSPS 292 (514)
T ss_dssp HHHHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTS------CTTT-CCSCSEEEEESSCCCHH
T ss_pred cccccccccccccccccccccccccchhhhhhhhhhhhcccccceeeecccc------cccc-cccccEEEEecccCCHH
Confidence 999988888888888887743 5678889999999999999998765432 1222 78899999999999999
Q ss_pred HHHHHHhcCCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEE
Q 008389 326 VLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEI 405 (567)
Q Consensus 326 ~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei 405 (567)
+.+++.+ ++.+++.||+||++.+++......... ......|.+.++. .+.+.|++ +++++.| +.|||
T Consensus 293 ~~~~~~~-~~~~~~~yG~tE~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~-~v~~~d~~-~~~~~~g--~~GEl 359 (514)
T d1amua_ 293 LVNKWKE-KVTYINAYGPTETTICATTWVATKETI--------GHSVPIGAPIQNT-QIYIVDEN-LQLKSVG--EAGEL 359 (514)
T ss_dssp HHHHHTT-TSEEEEEECCGGGSSCSEEEECCSSCC--------CSSCCCBEECTTE-EEEEECTT-SCBCCTT--CEEEE
T ss_pred Hhhhhcc-ceeEEEeeccccCceeeeecccccccc--------Ccccccccceeee-eEeeeccc-ceecCCC--CeeEE
Confidence 9887765 689999999999988876554332211 2235678888888 78888877 9999998 89999
Q ss_pred EEecccccccccCCCccchhcc-------cCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCc
Q 008389 406 VMSGNVVMKGYLKNPKANEETF-------ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAV 478 (567)
Q Consensus 406 ~v~~~~~~~gy~~~~~~~~~~~-------~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i 478 (567)
+|+|+.++.||++++..+...| .+|||+|||+|++|+||++++.||.+|+|+.+|++|+|.+||++|.++|+|
T Consensus 360 ~v~~~~~~~gY~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~l~i~GR~~d~i~~~G~~i~p~~IE~~l~~~~~V 439 (514)
T d1amua_ 360 CIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYI 439 (514)
T ss_dssp EEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTE
T ss_pred EEccCcccccccccccccceeeEeccccCCCceEEECCEEEECCCCcEEEEecccCEEEECCEEECHHHHHHHHHhCCCc
Confidence 9999999999999998887776 268999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEEeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHH
Q 008389 479 LEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRA 554 (567)
Q Consensus 479 ~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~ 554 (567)
.+++|++.+++..|+.++++|+.+++. +. ++|+++++++|++|++|..|++++ ||+|++|||+|++||+
T Consensus 440 ~~~~V~~~~~~~~g~~~~a~v~~~~~~---~~----~~l~~~~~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~ 509 (514)
T d1amua_ 440 SETAVSVHKDHQEQPYLCAYFVSEKHI---PL----EQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPE 509 (514)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEESSCC---CH----HHHHHHHHHHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCC
T ss_pred cEEEEEEEECCCCCEEEEEEEEcCCCC---CH----HHHHHHHHhhCCcccCceEEEEeCCCCCCCCcChhHHhcCC
Confidence 999999999999999999999987764 23 678899999999999999999888 9999999999999986
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=1.2e-69 Score=568.87 Aligned_cols=506 Identities=22% Similarity=0.299 Sum_probs=417.2
Q ss_pred hhcccCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCC
Q 008389 16 NYMALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGA 95 (567)
Q Consensus 16 ~~~~~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~ 95 (567)
-|.+.|+.++|+++|+++||++|+++.++++||+||++++.++|+.|.+.|+++||+|+++++|++++++++|||+++|+
T Consensus 21 ~~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~G~ 100 (536)
T d1mdba_ 21 CWAGETFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGA 100 (536)
T ss_dssp SSCSCCHHHHHHHHHHHHTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHCCCCeEEEECCEeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHHHHhCc
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHH
Q 008389 96 VLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEY 175 (567)
Q Consensus 96 ~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 175 (567)
+++|++|.++.+++.++++.++++++++++.................. ......+........ ..+
T Consensus 101 i~vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~------------~~~ 166 (536)
T d1mdba_ 101 LPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKL--PTLKNIIVAGEAEEF------------LPL 166 (536)
T ss_dssp EEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHC--TTCCCEEEESCCTTS------------EEG
T ss_pred EEEecCCCCCHHHHHHHHHhhccceEeccchhhhhhhhhhhhhhhhcc--ccccceeeeeccccc------------cch
Confidence 999999999999999999999999999987543322111111110000 022222222221110 111
Q ss_pred HHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhhHHHH
Q 008389 176 EKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTW 255 (567)
Q Consensus 176 ~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~ 255 (567)
+++ ........+..++++++|+|||||||.||+|.+||+++...+......+++.+++++++..|++|.+++...+
T Consensus 167 ~~~----~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~l~~~~ 242 (536)
T d1mdba_ 167 EDL----HTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPG 242 (536)
T ss_dssp GGC----CCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSH
T ss_pred hhc----ccCCcCCCccCccchHHhhhcccccccceecccccccccccccccccccccccccccccccccccccceeecc
Confidence 111 1111122345678999999999999999999999999999999999999999999999999999999976433
Q ss_pred HHh-hh-cCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHHHh-
Q 008389 256 SLA-AL-CGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQ- 332 (567)
Q Consensus 256 ~~~-~~-g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~- 332 (567)
... .. |.+.+....+++..++..+++++++.+..+|..+..+.......... +++++.+++||+++++...+++.+
T Consensus 243 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~gG~~~~~~~~~~~~~~ 321 (536)
T d1mdba_ 243 VLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDD-LSSLQVLQVGGAKFSAEAARRVKAV 321 (536)
T ss_dssp HHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCC-CTTCCEEEEESSCCCHHHHTTHHHH
T ss_pred ccccccccccccccCCCCHHHHHHHHhhhccccccccchhhhhhhhhccccccc-cCcceeEEEeccccccccccchhhc
Confidence 333 33 45555556789999999999999999999999999988776555555 889999999999999999999885
Q ss_pred cCCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEecccc
Q 008389 333 KGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVV 412 (567)
Q Consensus 333 ~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~ 412 (567)
++......|+.+|.+..+.... .......+..|.|+++. ...+++.++|++++.+ +.|||+++|+.+
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~g~p~~~~-~~~~v~~~~g~~~~~~--~~Gel~v~g~~~ 388 (536)
T d1mdba_ 322 FGCTLQQVFGMAEGLVNYTRLD----------DPEEIIVNTQGKPMSPY-DESRVWDDHDRDVKPG--ETGHLLTRGPYT 388 (536)
T ss_dssp TCSEEEEEEECTTSCEEECCTT----------SCHHHHHHCCCEESSTT-CEEEEECTTSCBCCTT--CCEEEEEECTTS
T ss_pred cCceeeeccccccccccccccc----------cccccccCCcccCCCCc-ceEEEEcCCCCeeccc--ccceeecCCCcc
Confidence 4899999999998765444322 12334557899999877 4555555669999988 789999999999
Q ss_pred cccccCCCccchhcc-cCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeecCCC
Q 008389 413 MKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERW 491 (567)
Q Consensus 413 ~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~ 491 (567)
+.||++++..+...+ .+|||+|||++++++||++++.||.+|+||++|++|+|.+||+.|.++|+|.+++|++.+++..
T Consensus 389 ~~gY~~~~~~~~~~~~~~~~~~tGD~~~~~~dG~l~~~GR~~d~i~~~G~~i~p~~IE~~l~~~p~V~~a~vvg~~~~~~ 468 (536)
T d1mdba_ 389 IRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFL 468 (536)
T ss_dssp CSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTT
T ss_pred ccccccccccccccccccCccccCccccccCCCceecCCCcceEEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCCC
Confidence 999999988777666 5789999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCcceEEEEEcCCccchhhHHHHHHHHHHHHhc-CCCCCCCceeecCc-ccCCCCccccHHHHHHHHHHc
Q 008389 492 GESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAK-MPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKEM 559 (567)
Q Consensus 492 g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~-l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~ 559 (567)
|+.++++|+++++. .+. ++++++++++ |+.|++|..|++++ ||+|++|||+|++|++++.+.
T Consensus 469 g~~~~a~v~~~~~~--~~~----~~l~~~l~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 532 (536)
T d1mdba_ 469 GERSCVFIIPRDEA--PKA----AELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEK 532 (536)
T ss_dssp EEEEEEEEEESSSC--CCH----HHHHHHHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHHH
T ss_pred CeEEEEEEEECCCC--CCH----HHHHHHHHhcCCCcCcCccEEEEECCCCcCCCcCccHHHHHHHHHHH
Confidence 99999999988764 233 6788888875 99999999999888 999999999999999999764
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=100.00 E-value=7.3e-65 Score=527.93 Aligned_cols=490 Identities=26% Similarity=0.351 Sum_probs=394.8
Q ss_pred cCHHHHHhhhhhcCCCceeEEECC--ccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCee
Q 008389 20 LTPLWFLDRAATVHPTRTSVVHGS--TRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVL 97 (567)
Q Consensus 20 ~t~~~~l~~~a~~~p~~~a~~~~~--~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~ 97 (567)
.|+.++|+++|+++||++|+++.+ +++||+||.+++.++|++|+++|+++||+|+++++|++++++++|||+++|+++
T Consensus 2 ~ti~~~l~~~a~~~pd~~al~~~~~~~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~ 81 (503)
T d3cw9a1 2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVP 81 (503)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEE
T ss_pred CCHHHHHHHHHHhCCCCeEEEECCCCcEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHHHHHhCcEE
Confidence 489999999999999999999854 689999999999999999999999999999999999999999999999999999
Q ss_pred eeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHHHH
Q 008389 98 NAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEK 177 (567)
Q Consensus 98 v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (567)
+|+++.++++++.++++.++++++|++..... ...... .. ....++.+.+...+..
T Consensus 82 vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~~~-~~~~~~-~~-------~~~~~i~~~~~~~~~~--------------- 137 (503)
T d3cw9a1 82 ALLNPRLKSAELAELIKRGEMTAAVIAVGRQV-ADAIFQ-SG-------SGARIIFLGDLVRDGE--------------- 137 (503)
T ss_dssp EEECTTSCHHHHHHHHHHTTCSEEEESSCHHH-HHHHHH-TT-------CCCEEEEHHHHEETTE---------------
T ss_pred EEeCCCCCHHHHHHHHHhcCCcEEEeecchHH-HHHHhh-hc-------cccccccchhhhhhhc---------------
Confidence 99999999999999999999999998876322 111111 11 3444554432110000
Q ss_pred HHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhc--cCCCcEEEEecCccchhhhHH-H
Q 008389 178 FLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWG--MNEGAVYLWTLPMFHCNGWCY-T 254 (567)
Q Consensus 178 ~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~--~~~~d~~~~~~p~~~~~g~~~-~ 254 (567)
.............+++++++++|||||||.||+|.++|+++..........+. ....++.+..+|+.|..+... .
T Consensus 138 --~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 215 (503)
T d3cw9a1 138 --PYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVL 215 (503)
T ss_dssp --ECCCSCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTSCCCSSTTCEEEECSCTTSHHHHHTTH
T ss_pred --ccccCCccccccchhhhhhhhcccccccccccccccccchhhhhhhhccccccccccccccccccCcccccccccccc
Confidence 00011111223456789999999999999999999999999988887776654 456689999999987777664 4
Q ss_pred HHHhhhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCC--CCCcCCCCchhhhhccCCCCCHHHHHHHHh
Q 008389 255 WSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPS--EDTILPLPHVVHVNTAGAAPPPSVLHAMSQ 332 (567)
Q Consensus 255 ~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~--~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~ 332 (567)
+.....++..+....+++..+...+..++++.+..+|..+..+..... ..... +++||.+++||++++++...++..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Lr~i~~gG~~~~~~~~~~~~~ 294 (503)
T d3cw9a1 216 VAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLK-LDSLRHVTFAGATMPDAVLETVHQ 294 (503)
T ss_dssp HHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTCTTCC-CTTCCEEEECSSCCCHHHHHHHHH
T ss_pred ccccccccccccccccChHHhhhhhhhceeecccccccccccccccccccccccc-ccceEEEEeccccccccccccccc
Confidence 445566777777788999999999999999999999999887765322 12233 788999999999999999998885
Q ss_pred c-CCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEecc-
Q 008389 333 K-GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGN- 410 (567)
Q Consensus 333 ~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~- 410 (567)
. +..+.+.||++|++..+......... ....+.+.+.. ........++.++.| +.|++.+.+.
T Consensus 295 ~~~~~~~~~yg~~e~~~~~~~~~~~~~~-----------~~~~~~~~~~~--~~~~~~~~~~~~~~g--~~g~~~~~~~~ 359 (503)
T d3cw9a1 295 HLPGEKVNIYGTTEAMNSLYMRQPKTGT-----------EMAPGFFSEVR--IVRIGGGVDEIVANG--EEGELIVAASD 359 (503)
T ss_dssp HCCSEEEEEEEETTTEEEEEEESCSSSS-----------EEBCCTTCCEE--EECTTSCTTCBCCTT--CCEEEEEECCT
T ss_pred cccccccccccccccceeeeeccccccc-----------cccccccccce--eeeeecccCcccCCC--ccccccccccc
Confidence 4 88999999999997766654332211 11222222222 233334447888887 7788877765
Q ss_pred cccccccCCCccchhcccCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeecCC
Q 008389 411 VVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADER 490 (567)
Q Consensus 411 ~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~ 490 (567)
....+|++++..+.+.|.+|||+|||+|++++||.++++||+||+||++|++|+|.+||+.+.++|+|.+|+|++.+++.
T Consensus 360 ~~~~~~~~~~~~t~~~~~~g~~~TgD~g~~~~dG~l~~~GR~~d~ik~~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~ 439 (503)
T d3cw9a1 360 SAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQR 439 (503)
T ss_dssp TSCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEEESSCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETT
T ss_pred cccccccCChhhhHHHhcCCceecccccccccCCeEEeCCCcCCeEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCC
Confidence 56678888888899999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCcceEEEEEcCCccchhhHHHHHHHHHHHH-hcCCCCCCCceeecCc-ccCCCCccccHHHHHHHH
Q 008389 491 WGESPCAFVTLKPEVDKSNEQQLAEDIMKFCR-AKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKA 556 (567)
Q Consensus 491 ~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~-~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~ 556 (567)
.|+.++++|+++++. ..+. ++++++++ ++|++|++|+.|++++ ||+|++|||+|++|++++
T Consensus 440 ~g~~~~a~v~~~~~~-~~~~----~~l~~~~~~~~l~~~~~P~~i~~v~~~P~t~~GKi~R~~L~~~~ 502 (503)
T d3cw9a1 440 WGQSVTACVVPRLGE-TLSA----DALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQV 502 (503)
T ss_dssp TEEEEEEEEEECTTC-CCCH----HHHHHHHHHSSSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHH
T ss_pred CCeEEEEEEEeCCCC-CCCH----HHHHHHHHhcCCCCCCCccEEEEECCCCcCCCcCccHHHHHHhc
Confidence 889999999998776 5555 67788885 6799999999999888 999999999999999875
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=82.66 E-value=2.8 Score=40.15 Aligned_cols=86 Identities=12% Similarity=0.024 Sum_probs=64.6
Q ss_pred eeeccHHHHHHHHHHHHH---hccCCCcEEEEecCccchhhhHHHHHHhhhcCeeEEec-cCCHHHHHHHHHhhCceEee
Q 008389 213 VVLSHRGAYLMSLSVALI---WGMNEGAVYLWTLPMFHCNGWCYTWSLAALCGTSICLR-QVTAKAVYSAIAKYGVTHFC 288 (567)
Q Consensus 213 v~~t~~~l~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~-~~~~~~~~~~i~~~~~t~l~ 288 (567)
..+|++.+...+...... .|++++|++...++... -.....++++..|+..+.+. ..+..++...++..++++++
T Consensus 46 ~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~-e~~v~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi 124 (541)
T d1lcia_ 46 VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSL-QFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVF 124 (541)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCS-STHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEE
T ss_pred eEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCH-HHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhccceEEe
Confidence 458999888776665554 48999999998887643 22344556667777776664 56789999999999999999
Q ss_pred eCcHHHHHHHc
Q 008389 289 AAPVVLNSIVN 299 (567)
Q Consensus 289 ~~p~~~~~l~~ 299 (567)
.....+..+.+
T Consensus 125 ~~~~~~~~~~~ 135 (541)
T d1lcia_ 125 VSKKGLQKILN 135 (541)
T ss_dssp ECGGGHHHHHH
T ss_pred eeccccccchh
Confidence 99988776543
|