Citrus Sinensis ID: 008397

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------
MGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMESEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVELKLRQSNDSRTYKEQTVESSPSSPYNPSKDLHLNPSGSKLQKVPVNKMVRTDSSDPAGRLHAYVQSKPHTSVASGPNLSAVRSSVRQRRNLNETADLTSIQELIDDVDRNCHSGLLDIVRHCSFIGMADDVYALLQHNTHMYLANVVSLSKELMYQLVLRRFAHFNAIQLSDPAPLSELLMLALKEEDLDVENSENDDLKEKIAEMNTELLKQKAEMLEEYFCVKIDTRGNLSRLPIILDQYTPDMDRIPEFVLCLGNDVDWEDEKCCFQAIAAALGNFYAMHPPLLPNPSGEGLQCYKKRKPLKNPVDIERYPNDAGMAIHPREVIV
cccccHHHHHHHHHHEEEEEEcccccccEEEEEEEccEEEccccccccccccEEEEcccccccHHHHHHccccHHHHHHHHHHHHHHHHccccEEEEEEEcccccEEEEccccccHHHHHHHHccHHHHcccccccccccccccccEEEEEEEEEcccccccccEEEEEEcccccccHHHHHHHHHHHHHccccccccEEEEEEEcccccccccccccccEEEcccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccHHHHHHHHHHHcccccccccccccEEEEEEccEEEEEEEcccEEEEEcHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccEEEcccccEEEEccccccccccccccHHHHHHHcccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccEEEEcccccccccccccccc
ccccccHHHHHHHccEEEEEEEccccccEEEEEEEccccEEEEEEEccccEEEEEEEccccccHHHHcccccHHHHHHHHHHHHHHHHHHccccEEEEEEccccEEEEccccccHHHHHHHHHHcHHHHHHHcccEcccccccHHccEEEEEEEEcccccccccEEEEEEcccEEccHHHHHHHHHHHHHHcccccccEEEEEEEEccccEEEcccccccEEEEccHHHHHHHHHHHHHHHHHcccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccHHHHHHHHHHHcccccHccccccEEEEEEccEEEEEEcccEEEEEEHHHHHHHHHHHHHHHHHcccccEEccccccHHHHHHHHHHcHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHcEEEEcccccEEEccHHcccccccHHHccHHHHHcccccccccHHHHHHHHHHHHHHHccccccccccccccccEEEEcccccccccccccccHHHcccccccEEEc
MGFRGEALASMTYVGHVTVTTITkghlhgyrvsyrdgvmesepkacaaVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHhtnvsfscrkhgaaradvhsiatssrldSIRTVYGVSVASNLVQLEAseyndsssfvfkmdgyvsnsnyvAKKTTMVLFVNdrlvecaplKRAVEIVYAatfpkaskpfiymsivlppehvdvnvhptKREVSLLNQELIVEKIQSAVELKLRqsndsrtykeqtvesspsspynpskdlhlnpsgsklqkvpvnkmvrtdssdpagrlhayvqskphtsvasgpnlsAVRSSVRQRRNLNETADLTSIQELIDDVDRNCHSGLLDIVRHCSFIGMADDVYALLQHNTHMYLANVVSLSKELMYQLVLRRFAHfnaiqlsdpapLSELLMLALKEedldvensenDDLKEKIAEMNTELLKQKAEMLEEYFCVKidtrgnlsrlpiildqytpdmdriPEFVLclgndvdwedeKCCFQAIAAALGNfyamhppllpnpsgeglqcykkrkplknpvdierypndagmaihpreviv
MGFRGEALASMTYVGHVTVttitkghlhGYRVSYRDGVMESEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHsiatssrldsiRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVELklrqsndsrtykeqtvesspsspynpsKDLHLNpsgsklqkvpvNKMVRTDSSDPAGRLHAYVQskphtsvasgpnlsAVRSSVRQRRNLNETADLTSIQELIDDVDRNCHSGLLDIVRHCSFIGMADDVYALLQHNTHMYLANVVSLSKELMYQLVLRRFAHFNAIQLSDPAPLSELLMLALKEEDLDVENSENDDLKEKIAEMNTELLKQKAEMLEEYFCVKidtrgnlsrlPIILDQYTPDMDRIPEFVLCLGNDVDWEDEKCCFQAIAAALGNFYAMHPPLLPNPSGEGLQCYKKRKPlknpvdierypndagmaihpreviv
MGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMESEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVELKLRQSNDSRTYKEQTVESSPSSPYNPSKDLHLNPSGSKLQKVPVNKMVRTDSSDPAGRLHAYVQSKPHTSVASGPNLSAVRSSVRQRRNLNETADLTSIQELIDDVDRNCHSGLLDIVRHCSFIGMADDVYALLQHNTHMYLANVVSLSKELMYQLVLRRFAHFNAIQLSDPAPLSELLMLALKEEDLDVENSENDDLKEKIAEMNTELLKQKAEMLEEYFCVKIDTRGNLSRLPIILDQYTPDMDRIPEFVLCLGNDVDWEDEKCCFQAIAAALGNFYAMHPPLLPNPSGEGLQCYKKRKPLKNPVDIERYPNDAGMAIHPREVIV
*******LASMTYVGHVTVTTITKGHLHGYRVSYRDGVMESEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAV*************************************************************************************************LTSIQELIDDVDRNCHSGLLDIVRHCSFIGMADDVYALLQHNTHMYLANVVSLSKELMYQLVLRRFAHFNAIQLSDPAPLSELLMLAL**************************LKQKAEMLEEYFCVKIDTRGNLSRLPIILDQYTPDMDRIPEFVLCLGNDVDWEDEKCCFQAIAAALGNFYAMHPPLL*****************************************
MGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMESEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVELKLR*****************************************************************************************************************IVRHCSFIGMADDVYALLQHNTHMYLANVVSLSKELMYQLVLRRFAHFNAIQLSDPAPLSELLMLALKEEDLDVENSENDDLKEKIAEMNTELLKQKAEMLEEYFCVKIDTRGNLSRLPIILDQYTPDMDRIPEFVLCLGNDVDWEDEKCCFQAIAAALGNFYAMH**********************NPVDIERYPNDAGMAIHPREVIV
MGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMESEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVELKLRQS***********************DLHLNPSGSKLQKVPVNKMVRTDSSDPAGRLHAYVQSKPHTSVASGPNLSAVRSSVRQRRNLNETADLTSIQELIDDVDRNCHSGLLDIVRHCSFIGMADDVYALLQHNTHMYLANVVSLSKELMYQLVLRRFAHFNAIQLSDPAPLSELLMLALKEEDLDVENSENDDLKEKIAEMNTELLKQKAEMLEEYFCVKIDTRGNLSRLPIILDQYTPDMDRIPEFVLCLGNDVDWEDEKCCFQAIAAALGNFYAMHPPLLPNPSGEGLQCYKKRKPLKNPVDIERYPNDAGMAIHPREVIV
*GFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMESEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVELKLRQS*DS***************************************************************************************LTSIQELIDDVDRNCHSGLLDIVRHCSFIGMADDVYALLQHNTHMYLANVVSLSKELMYQLVLRRFAHFNAIQLSDPAPLSELLMLALKEEDL******NDDLKEKIAEMNTELLKQKAEMLEEYFCVKIDTRGNLSRLPIILDQYTPDMDRIPEFVLCLGNDVDWEDEKCCFQAIAAALGNFYAMHPPLLPNPSGEGLQCYKKRKPLKNPVDIERYPNDAGMAIHPREVIV
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMESEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVELKLRQSNDSRTYKEQTVESSPSSPYNPSKDLHLNPSGSKLQKVPVNKMVRTDSSDPAGRLHAYVQSKPHTSVASGPNLSAVRSSVRQRRNLNETADLTSIQELIDDVDRNCHSGLLDIVRHCSFIGMADDVYALLQHNTHMYLANVVSLSKELMYQLVLRRFAHFNAIQLSDPAPLSELLMxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxYFCVKIDTRGNLSRLPIILDQYTPDMDRIPEFVLCLGNDVDWEDEKCCFQAIAAALGNFYAMHPPLLPNPSGEGLQCYKKRKPLKNPVDIERYPNDAGMAIHPREVIV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query567 2.2.26 [Sep-21-2011]
Q9JK91 760 DNA mismatch repair prote yes no 0.560 0.418 0.418 2e-70
P40692756 DNA mismatch repair prote yes no 0.534 0.400 0.434 6e-70
P97679757 DNA mismatch repair prote yes no 0.523 0.392 0.429 2e-69
Q9P7W6684 Putative MutL protein hom yes no 0.888 0.736 0.308 1e-65
P38920769 DNA mismatch repair prote yes no 0.511 0.377 0.402 5e-57
Q54KD8 884 DNA mismatch repair prote yes no 0.451 0.289 0.354 6e-48
B8CX97644 DNA mismatch repair prote yes no 0.493 0.434 0.320 7e-32
B2TIB8672 DNA mismatch repair prote yes no 0.412 0.348 0.333 3e-30
B9DPC0646 DNA mismatch repair prote yes no 0.638 0.560 0.284 8e-30
Q03MY0647 DNA mismatch repair prote yes no 0.407 0.357 0.308 2e-28
>sp|Q9JK91|MLH1_MOUSE DNA mismatch repair protein Mlh1 OS=Mus musculus GN=Mlh1 PE=2 SV=2 Back     alignment and function desciption
 Score =  267 bits (682), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 139/332 (41%), Positives = 215/332 (64%), Gaps = 14/332 (4%)

Query: 2   GFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMESEPKACAAVKGTQIMVENLFY 61
           GFRGEALAS+++V HVT+TT T      YR SY DG +++ PK CA  +GT I VE+LFY
Sbjct: 98  GFRGEALASISHVAHVTITTKTADGKCAYRASYSDGKLQAPPKPCAGNQGTLITVEDLFY 157

Query: 62  NMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIR 121
           N+I RRK L+N S++Y KI++++ R +IH++ +SFS +K G   +DV ++  ++ +D+IR
Sbjct: 158 NIITRRKALKNPSEEYGKILEVVGRYSIHNSGISFSVKKQGETVSDVRTLPNATTVDNIR 217

Query: 122 TVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVECAPLK 181
           +++G +V+  L+++      +  +  FKM+GY+SN+NY  KK   +LF+N RLVE A L+
Sbjct: 218 SIFGNAVSRELIEVGC----EDKTLAFKMNGYISNANYSVKKCIFLLFINHRLVESAALR 273

Query: 182 RAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVELK 241
           +A+E VYAA  PK + PF+Y+S+ + P++VDVNVHPTK EV  L++E I++++Q  +E K
Sbjct: 274 KAIETVYAAYLPKNTHPFLYLSLEISPQNVDVNVHPTKHEVHFLHEESILQRVQQHIESK 333

Query: 242 LRQSNDSRTYKEQTVESSPSSPYN----PSKDLHLNPSGSKLQKVPVNKMVRTDSSDPAG 297
           L  SN SR Y  QT+    + P      P+  +  + +     KV   +MVRTDS +   
Sbjct: 334 LLGSNSSRMYFTQTLLPGLAGPSGEAARPTTGVASSSTSGSGDKVYAYQMVRTDSREQ-- 391

Query: 298 RLHAYVQSKPHTSVASGPNLSAVRSSVRQRRN 329
           +L A++Q  P +S+  GP+     + VR  R 
Sbjct: 392 KLDAFLQ--PVSSL--GPSQPQDPAPVRGART 419
Heterodimerizes with Pms2 to form MutL alpha, a component of the post-replicative DNA mismatch repair system (MMR). DNA repair is initiated by MutS alpha (Msh2-Msh6) or MutS beta (Msh2-Msh6) binding to a dsDNA mismatch, then MutL alpha is recruited to the heteroduplex. Assembly of the MutL-MutS-heteroduplex ternary complex in presence of RFC and PCNA is sufficient to activate endonuclease activity of Pms2. It introduces single-strand breaks near the mismatch and thus generates new entry points for the exonuclease EXO1 to degrade the strand containing the mismatch. DNA methylation would prevent cleavage and therefore assure that only the newly mutated DNA strand is going to be corrected. MutL alpha (Mlh1-Pms2) interacts physically with the clamp loader subunits of DNA polymerase III, suggesting that it may play a role to recruit the DNA polymerase III to the site of the MMR. Also implicated in DNA damage signaling, a process which induces cell cycle arrest and can lead to apoptosis in case of major DNA damages. Heterodimerizes with Mlh3 to form MutL gamma which plays a role in meiosis.
Mus musculus (taxid: 10090)
>sp|P40692|MLH1_HUMAN DNA mismatch repair protein Mlh1 OS=Homo sapiens GN=MLH1 PE=1 SV=1 Back     alignment and function description
>sp|P97679|MLH1_RAT DNA mismatch repair protein Mlh1 OS=Rattus norvegicus GN=Mlh1 PE=2 SV=1 Back     alignment and function description
>sp|Q9P7W6|MLH1_SCHPO Putative MutL protein homolog 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mlh1 PE=2 SV=1 Back     alignment and function description
>sp|P38920|MLH1_YEAST DNA mismatch repair protein MLH1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MLH1 PE=1 SV=2 Back     alignment and function description
>sp|Q54KD8|MLH1_DICDI DNA mismatch repair protein Mlh1 OS=Dictyostelium discoideum GN=mlh1 PE=3 SV=1 Back     alignment and function description
>sp|B8CX97|MUTL_HALOH DNA mismatch repair protein MutL OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=mutL PE=3 SV=1 Back     alignment and function description
>sp|B2TIB8|MUTL_CLOBB DNA mismatch repair protein MutL OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=mutL PE=3 SV=1 Back     alignment and function description
>sp|B9DPC0|MUTL_STACT DNA mismatch repair protein MutL OS=Staphylococcus carnosus (strain TM300) GN=mutL PE=3 SV=1 Back     alignment and function description
>sp|Q03MY0|MUTL_STRTD DNA mismatch repair protein MutL OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=mutL PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query567
224146324 747 predicted protein [Populus trichocarpa] 0.970 0.736 0.778 0.0
255561542 735 DNA mismatch repair protein mlh1, putati 0.941 0.726 0.771 0.0
297813357 727 hypothetical protein ARALYDRAFT_911184 [ 0.950 0.741 0.754 0.0
30680985 737 DNA mismatch repair protein MLH1 [Arabid 0.950 0.731 0.750 0.0
13430732 727 putative MLH1 protein [Arabidopsis thali 0.950 0.741 0.750 0.0
356507690 727 PREDICTED: DNA mismatch repair protein M 0.952 0.742 0.731 0.0
449522942 738 PREDICTED: DNA mismatch repair protein M 0.955 0.734 0.734 0.0
449441546 738 PREDICTED: DNA mismatch repair protein M 0.955 0.734 0.734 0.0
357455563 764 DNA mismatch repair protein Mlh1 [Medica 0.952 0.706 0.668 0.0
115442355 724 Os01g0958900 [Oryza sativa Japonica Grou 0.947 0.741 0.632 0.0
>gi|224146324|ref|XP_002325965.1| predicted protein [Populus trichocarpa] gi|222862840|gb|EEF00347.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  905 bits (2340), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/555 (77%), Positives = 493/555 (88%), Gaps = 5/555 (0%)

Query: 1   MGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMESEPKACAAVKGTQIMVENLF 60
           MGFRGEALASMTYVGHVTVTTIT G LHG  VSYRDGVME EPK CAAVKGTQIMVENLF
Sbjct: 123 MGFRGEALASMTYVGHVTVTTITPGKLHGSGVSYRDGVMEDEPKPCAAVKGTQIMVENLF 182

Query: 61  YNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSI 120
           YNMIARRKT QNSSDDY+KIVDLLSR AIHH NVSFSCRKHGA+RADVHS+ TSSRLDSI
Sbjct: 183 YNMIARRKTFQNSSDDYSKIVDLLSRFAIHHINVSFSCRKHGASRADVHSVTTSSRLDSI 242

Query: 121 RTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVECAPL 180
           R+VYGVSVA NL+++E  + +D SS VF MDG +SNSNYVAKKTTMVLF+NDRLVEC  L
Sbjct: 243 RSVYGVSVALNLMKIEVPD-SDPSSSVFNMDGLISNSNYVAKKTTMVLFINDRLVECTAL 301

Query: 181 KRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVEL 240
           KRA+EIVYAAT PKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQE I+  IQSAVE 
Sbjct: 302 KRAIEIVYAATLPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQEFIINTIQSAVES 361

Query: 241 KLRQSNDSRTYKEQTVESSPSSPYNPSKDLHLNPS----GSKLQKVPVNKMVRTDSSDPA 296
           KLR SN++RT++EQT++SSPS   +  KD ++NPS    GSK QKVPVNKMVRTD+SDPA
Sbjct: 362 KLRNSNEARTFQEQTLDSSPSVTLSAKKDSNVNPSPSPYGSKSQKVPVNKMVRTDASDPA 421

Query: 297 GRLHAYVQSKPHTSVASGPNLSAVRSSVRQRRNLNETADLTSIQELIDDVDRNCHSGLLD 356
           GRLHAY+Q++P  ++    +L+AVRSSVRQRRN  E+AD++S+QEL++D+D NCHSGLLD
Sbjct: 422 GRLHAYLQARPVDNLEGNSSLAAVRSSVRQRRNPKESADISSVQELVNDIDGNCHSGLLD 481

Query: 357 IVRHCSFIGMADDVYALLQHNTHMYLANVVSLSKELMYQLVLRRFAHFNAIQLSDPAPLS 416
           IVR+C++IGMADDV+ALLQ+ T +YLANVV+LSKELMYQ VLRRFAHFN IQLSDPAPL 
Sbjct: 482 IVRNCTYIGMADDVFALLQYKTQLYLANVVNLSKELMYQQVLRRFAHFNVIQLSDPAPLR 541

Query: 417 ELLMLALKEEDLDVENSENDDLKEKIAEMNTELLKQKAEMLEEYFCVKIDTRGNLSRLPI 476
            L+MLALKEEDLD+E++EN+DL+EKIAEMNTELLK KAE+LEEYFC+ ID+ GNLSRLP+
Sbjct: 542 LLIMLALKEEDLDLESNENEDLREKIAEMNTELLKDKAELLEEYFCIYIDSHGNLSRLPV 601

Query: 477 ILDQYTPDMDRIPEFVLCLGNDVDWEDEKCCFQAIAAALGNFYAMHPPLLPNPSGEGLQC 536
           ILDQYTPDMDRIPEFVL LGNDVDWEDEK CFQ IAAA+GNFYA+HPPLLP+PSG+GLQ 
Sbjct: 602 ILDQYTPDMDRIPEFVLSLGNDVDWEDEKNCFQTIAAAVGNFYAIHPPLLPSPSGDGLQF 661

Query: 537 YKKRKPLKNPVDIER 551
           Y++RKP KNP D E+
Sbjct: 662 YRRRKPEKNPDDKEK 676

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255561542|ref|XP_002521781.1| DNA mismatch repair protein mlh1, putative [Ricinus communis] gi|223538994|gb|EEF40591.1| DNA mismatch repair protein mlh1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297813357|ref|XP_002874562.1| hypothetical protein ARALYDRAFT_911184 [Arabidopsis lyrata subsp. lyrata] gi|297320399|gb|EFH50821.1| hypothetical protein ARALYDRAFT_911184 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|30680985|ref|NP_567345.2| DNA mismatch repair protein MLH1 [Arabidopsis thaliana] gi|3893081|emb|CAA10163.1| MLH1 protein [Arabidopsis thaliana] gi|7267557|emb|CAB78038.1| MLH1 protein [Arabidopsis thaliana] gi|332657326|gb|AEE82726.1| DNA mismatch repair protein MLH1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|13430732|gb|AAK25988.1|AF360278_1 putative MLH1 protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356507690|ref|XP_003522597.1| PREDICTED: DNA mismatch repair protein Mlh1-like [Glycine max] Back     alignment and taxonomy information
>gi|449522942|ref|XP_004168484.1| PREDICTED: DNA mismatch repair protein Mlh1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449441546|ref|XP_004138543.1| PREDICTED: DNA mismatch repair protein Mlh1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357455563|ref|XP_003598062.1| DNA mismatch repair protein Mlh1 [Medicago truncatula] gi|355487110|gb|AES68313.1| DNA mismatch repair protein Mlh1 [Medicago truncatula] Back     alignment and taxonomy information
>gi|115442355|ref|NP_001045457.1| Os01g0958900 [Oryza sativa Japonica Group] gi|57900283|dbj|BAD87116.1| putative MutL homolog 1 protein [Oryza sativa Japonica Group] gi|113534988|dbj|BAF07371.1| Os01g0958900 [Oryza sativa Japonica Group] gi|215737085|dbj|BAG96014.1| unnamed protein product [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query567
TAIR|locus:2122388737 MLH1 "AT4G09140" [Arabidopsis 0.950 0.731 0.750 3.8e-220
UNIPROTKB|Q5JN46724 P0401G10.10 "Os01g0958900 prot 0.947 0.741 0.632 9.8e-190
UNIPROTKB|E1BQE0757 MLH1 "Uncharacterized protein" 0.596 0.446 0.409 2.4e-108
MGI|MGI:101938 760 Mlh1 "mutL homolog 1 (E. coli) 0.559 0.417 0.419 3.5e-107
UNIPROTKB|P40692756 MLH1 "DNA mismatch repair prot 0.534 0.400 0.434 2.2e-105
UNIPROTKB|E2RBM6757 MLH1 "Uncharacterized protein" 0.583 0.437 0.406 4e-104
UNIPROTKB|F1MPG0758 MLH1 "Uncharacterized protein" 0.523 0.391 0.423 4.6e-103
UNIPROTKB|E9PCU2658 MLH1 "DNA mismatch repair prot 0.527 0.454 0.427 5.8e-103
RGD|620937757 Mlh1 "mutL homolog 1, colon ca 0.522 0.391 0.441 1.1e-101
UNIPROTKB|P97679757 Mlh1 "DNA mismatch repair prot 0.522 0.391 0.441 1.1e-101
TAIR|locus:2122388 MLH1 "AT4G09140" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2126 (753.4 bits), Expect = 3.8e-220, P = 3.8e-220
 Identities = 407/542 (75%), Positives = 470/542 (86%)

Query:     1 MGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMESEPKACAAVKGTQIMVENLF 60
             MGFRGEALASMTYV HVTVTTITKG +HGYRVSYRDGVME EPKACAAVKGTQIMVENLF
Sbjct:   118 MGFRGEALASMTYVAHVTVTTITKGQIHGYRVSYRDGVMEHEPKACAAVKGTQIMVENLF 177

Query:    61 YNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSI 120
             YNMIARRKTLQNS+DDY KIVDLLSRMAIH+ NVSFSCRKHGA +ADVHS+ + SRLDSI
Sbjct:   178 YNMIARRKTLQNSADDYGKIVDLLSRMAIHYNNVSFSCRKHGAVKADVHSVVSPSRLDSI 237

Query:   121 RTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVECAPL 180
             R+VYGVSVA NL+++E S   DSS   F M+G++SNSNYVAKKT +VLF+NDRLVEC+ L
Sbjct:   238 RSVYGVSVAKNLMKVEVSSC-DSSGCTFDMEGFISNSNYVAKKTILVLFINDRLVECSAL 296

Query:   181 KRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVEL 240
             KRA+EIVYAAT PKASKPF+YMSI LP EHVD+N+HPTK+EVSLLNQE+I+E IQS VE+
Sbjct:   297 KRAIEIVYAATLPKASKPFVYMSINLPREHVDINIHPTKKEVSLLNQEIIIEMIQSEVEV 356

Query:   241 KLRQSNDSRTYKEQTVESSPSSPYNPSKDLHLN--PSGSKLQKVPVNKMVRTDSSDPAGR 298
             KLR +ND+RT++EQ VE   S+  +   D  ++  PSG K QKVPVNKMVRTDSSDPAGR
Sbjct:   357 KLRNANDTRTFQEQKVEYIQSTLTSQKSDSPVSQKPSGQKTQKVPVNKMVRTDSSDPAGR 416

Query:   299 LHAYVQSKPHTSVASGPNLSAVRSSVRQRRNLNETADLTSIQELIDDVDRNCHSGLLDIV 358
             LHA++Q KP +      +LS VRSSVRQRRN  ETADL+S+QELI  VD  CH G+L+ V
Sbjct:   417 LHAFLQPKPQSLPDKVSSLSVVRSSVRQRRNPKETADLSSVQELIAGVDSCCHPGMLETV 476

Query:   359 RHCSFIGMADDVYALLQHNTHMYLANVVSLSKELMYQLVLRRFAHFNAIQLSDPAPLSEL 418
             R+C+++GMADDV+AL+Q+NTH+YLANVV+LSKELMYQ  LRRFAHFNAIQLSDPAPLSEL
Sbjct:   477 RNCTYVGMADDVFALVQYNTHLYLANVVNLSKELMYQQTLRRFAHFNAIQLSDPAPLSEL 536

Query:   419 LMLALKEEDLDVENSENDDLKEKIAEMNTELLKQKAEMLEEYFCVKIDTRGNLSRLPIIL 478
             ++LALKEEDLD  N   DDLKE+IAEMNTELLK+KAEMLEEYF V ID+  NLSRLP+IL
Sbjct:   537 ILLALKEEDLDPGNDTKDDLKERIAEMNTELLKEKAEMLEEYFSVHIDSSANLSRLPVIL 596

Query:   479 DQYTPDMDRIPEFVLCLGNDVDWEDEKCCFQAIAAALGNFYAMHPPLLPNPSGEGLQCYK 538
             DQYTPDMDR+PEF+LCLGNDV+WEDEK CFQ ++AA+GNFYAMHPPLLPNPSG+G+Q Y 
Sbjct:   597 DQYTPDMDRVPEFLLCLGNDVEWEDEKSCFQGVSAAIGNFYAMHPPLLPNPSGDGIQFYS 656

Query:   539 KR 540
             KR
Sbjct:   657 KR 658
GO:0000795 "synaptonemal complex" evidence=IBA
GO:0005524 "ATP binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0005712 "chiasma" evidence=IBA
GO:0006200 "ATP catabolic process" evidence=IBA
GO:0006298 "mismatch repair" evidence=ISS;IBA
GO:0007131 "reciprocal meiotic recombination" evidence=RCA;IBA
GO:0016887 "ATPase activity" evidence=IBA
GO:0030983 "mismatched DNA binding" evidence=IEA;IBA
GO:0032389 "MutLalpha complex" evidence=IBA
GO:0032390 "MutLbeta complex" evidence=IBA
GO:0030674 "protein binding, bridging" evidence=ISS
GO:0006312 "mitotic recombination" evidence=RCA;IMP
GO:0009555 "pollen development" evidence=RCA;IMP
GO:0009845 "seed germination" evidence=RCA;IMP
GO:0010154 "fruit development" evidence=IMP
GO:0048316 "seed development" evidence=IMP
GO:0000790 "nuclear chromatin" evidence=IDA
GO:0000278 "mitotic cell cycle" evidence=RCA
GO:0000724 "double-strand break repair via homologous recombination" evidence=RCA
GO:0006261 "DNA-dependent DNA replication" evidence=RCA
GO:0006275 "regulation of DNA replication" evidence=RCA
GO:0006302 "double-strand break repair" evidence=RCA
GO:0006306 "DNA methylation" evidence=RCA
GO:0007062 "sister chromatid cohesion" evidence=RCA
GO:0007129 "synapsis" evidence=RCA
GO:0009560 "embryo sac egg cell differentiation" evidence=RCA
GO:0009737 "response to abscisic acid stimulus" evidence=RCA
GO:0009793 "embryo development ending in seed dormancy" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0010564 "regulation of cell cycle process" evidence=RCA
GO:0016444 "somatic cell DNA recombination" evidence=RCA
GO:0016568 "chromatin modification" evidence=RCA
GO:0031047 "gene silencing by RNA" evidence=RCA
GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA
GO:0045132 "meiotic chromosome segregation" evidence=RCA
GO:0048366 "leaf development" evidence=RCA
GO:0048825 "cotyledon development" evidence=RCA
GO:0051726 "regulation of cell cycle" evidence=RCA
UNIPROTKB|Q5JN46 P0401G10.10 "Os01g0958900 protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|E1BQE0 MLH1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:101938 Mlh1 "mutL homolog 1 (E. coli)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|P40692 MLH1 "DNA mismatch repair protein Mlh1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RBM6 MLH1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1MPG0 MLH1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E9PCU2 MLH1 "DNA mismatch repair protein Mlh1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|620937 Mlh1 "mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P97679 Mlh1 "DNA mismatch repair protein Mlh1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
scaffold_603241.1
annotation not avaliable (727 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
fgenesh2_kg.3__2059__AT3G18524.1
annotation not avaliable (937 aa)
• ••••• 0.987
fgenesh2_kg.7__2572__AT4G17380.1
annotation not avaliable (792 aa)
• • ••• 0.939
scaffold_604079.1
annotation not avaliable (1326 aa)
• ••••• 0.905
fgenesh2_kg.7__1706__AT4G25540.1
At4g25540-like protein (1078 aa)
• • ••• 0.900
fgenesh2_kg.3__2273__AT3G20475.1
annotation not avaliable (807 aa)
• •  •• 0.883
fgenesh2_kg.6__3453__AT4G02460.1
annotation not avaliable (923 aa)
   •••••0.791
fgenesh2_kg.3__2659__AT3G24495.1
annotation not avaliable (1119 aa)
• • ••• 0.774
fgenesh2_kg.8__2404__AT5G63960.1
annotation not avaliable (1092 aa)
   •• • 0.774
fgenesh2_kg.6__2035__AT5G20040.1
annotation not avaliable (463 aa)
•     • 0.715
Al_scaffold_0009_170
annotation not avaliable (495 aa)
•     • 0.704

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query567
COG0323638 COG0323, MutL, DNA mismatch repair enzyme (predict 1e-66
cd03483127 cd03483, MutL_Trans_MLH1, MutL_Trans_MLH1: transdu 2e-59
TIGR00585312 TIGR00585, mutl, DNA mismatch repair protein MutL 2e-53
PRK00095617 PRK00095, mutL, DNA mismatch repair protein; Revie 4e-47
cd00782122 cd00782, MutL_Trans, MutL_Trans: transducer domain 8e-33
pfam01119119 pfam01119, DNA_mis_repair, DNA mismatch repair pro 2e-30
cd00329107 cd00329, TopoII_MutL_Trans, MutL_Trans: transducer 2e-16
cd03484142 cd03484, MutL_Trans_hPMS_2_like, MutL_Trans_hPMS2_ 1e-14
cd03485132 cd03485, MutL_Trans_hPMS_1_like, MutL_Trans_hPMS1_ 1e-08
cd03482123 cd03482, MutL_Trans_MutL, MutL_Trans_MutL: transdu 1e-06
>gnl|CDD|223400 COG0323, MutL, DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair] Back     alignment and domain information 
 Score =  227 bits (582), Expect = 1e-66
 Identities = 115/465 (24%), Positives = 192/465 (41%), Gaps = 28/465 (6%)

Query: 1   MGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMESEPKACAAVKGTQIMVENLF 60
           +GFRGEALAS+  V  +T+T+ T     G ++    G ME   K  A   GT + V +LF
Sbjct: 93  LGFRGEALASIASVSRLTITSRTAEASEGTQIYAEGGGMEVTVKPAAHPVGTTVEVRDLF 152

Query: 61  YNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLD-S 119
           YN  ARRK L++   ++  I +L++R A+ H ++SFS   +G  R ++  +  +  L+  
Sbjct: 153 YNTPARRKFLKSEKTEFGHITELINRYALAHPDISFSLSHNGKLRIELLKLPGTGDLEER 212

Query: 120 IRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYV-AKKTTMVLFVNDRLVECA 178
           I  VYG     N + +E    N+         GYVS   +  A +    LFVN R V   
Sbjct: 213 IAAVYGTEFLKNALPIE----NEHEDLRLS--GYVSLPEFTRASRDYQYLFVNGRPVRDK 266

Query: 179 PLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAV 238
            L  A+   YA   P+   P   + + L PE VDVNVHP K+EV   ++ L+ + I  A+
Sbjct: 267 LLNHALREAYADYLPRGRYPVFVLFLELDPELVDVNVHPAKKEVRFSDERLVHDLIYEAI 326

Query: 239 ELKLRQSNDSR--TYKEQTVESSPSSPYNPSKDLHLNP-SGSKLQKVPVNKMVRTDSSDP 295
           +  L Q       + +     S P   +     L  +    SK+ K   +K      ++P
Sbjct: 327 KEALAQQGLIPPASVEAPKSASQPLPAFQEPSPLPESRIQKSKVAKSGSSKSDAPSIAEP 386

Query: 296 AGRLHAYVQSKPHTSVASGPNLSAVRSSVRQRRNLNETADLTSIQELIDDVDRNCHSGLL 355
           A        S     ++      +   S++      +       +      +    +   
Sbjct: 387 ASGASPSPASPSIRPLSKNILPESSPGSLKNEDRSYDDLLEEPAESEDKQEEAEQKAISE 446

Query: 356 DIVRHCSFIGMADDVYALLQHNTHMYLANVVSLSKELMYQLVLRRFAHFNAIQLSDPAPL 415
           D+      IG     Y L +H   + L +  +  + ++Y+ +     +   +Q     PL
Sbjct: 447 DVFPLGEAIGQVHGTYILAEHEDGLVLVDQHAAHERILYEKLKNELGNVGELQ-----PL 501

Query: 416 SELLMLALKEEDLDVENSENDDLKEKIAEMNTELLKQKAEMLEEY 460
              + L L  E+ DV             E + E L++    +E +
Sbjct: 502 LIPIRLELSPEEADV------------LEEHKEELEKLGFEIESF 534

Length = 638
>gnl|CDD|239565 cd03483, MutL_Trans_MLH1, MutL_Trans_MLH1: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH1 (MutL homologue 1) Back     alignment and domain information
>gnl|CDD|233035 TIGR00585, mutl, DNA mismatch repair protein MutL Back     alignment and domain information
>gnl|CDD|234630 PRK00095, mutL, DNA mismatch repair protein; Reviewed Back     alignment and domain information
>gnl|CDD|238405 cd00782, MutL_Trans, MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of DNA mismatch repair (MutL/MLH1/PMS2) family Back     alignment and domain information
>gnl|CDD|201604 pfam01119, DNA_mis_repair, DNA mismatch repair protein, C-terminal domain Back     alignment and domain information
>gnl|CDD|238202 cd00329, TopoII_MutL_Trans, MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of type II DNA topoisomerases (Topo II) and DNA mismatch repair (MutL/MLH1/PMS2) proteins Back     alignment and domain information
>gnl|CDD|239566 cd03484, MutL_Trans_hPMS_2_like, MutL_Trans_hPMS2_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM2 (hPSM2) Back     alignment and domain information
>gnl|CDD|239567 cd03485, MutL_Trans_hPMS_1_like, MutL_Trans_hPMS1_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM1 (hPSM1) and yeast MLH2 Back     alignment and domain information
>gnl|CDD|239564 cd03482, MutL_Trans_MutL, MutL_Trans_MutL: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to Escherichia coli MutL Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 567
KOG1979694 consensus DNA mismatch repair protein - MLH1 famil 100.0
COG0323638 MutL DNA mismatch repair enzyme (predicted ATPase) 100.0
PRK00095617 mutL DNA mismatch repair protein; Reviewed 100.0
TIGR00585312 mutl DNA mismatch repair protein MutL. All protein 100.0
KOG1978672 consensus DNA mismatch repair protein - MLH2/PMS1/ 100.0
cd03483127 MutL_Trans_MLH1 MutL_Trans_MLH1: transducer domain 99.97
PF01119119 DNA_mis_repair: DNA mismatch repair protein, C-ter 99.96
cd03482123 MutL_Trans_MutL MutL_Trans_MutL: transducer domain 99.96
cd03485132 MutL_Trans_hPMS_1_like MutL_Trans_hPMS1_like: tran 99.95
cd03486141 MutL_Trans_MLH3 MutL_Trans_MLH3: transducer domain 99.95
KOG1977 1142 consensus DNA mismatch repair protein - MLH3 famil 99.95
cd00782122 MutL_Trans MutL_Trans: transducer domain, having a 99.94
cd03484142 MutL_Trans_hPMS_2_like MutL_Trans_hPMS2_like: tran 99.94
PRK14867659 DNA topoisomerase VI subunit B; Provisional 99.82
cd00329107 TopoII_MutL_Trans MutL_Trans: transducer domain, h 99.74
PF08676144 MutL_C: MutL C terminal dimerisation domain; Inter 99.73
smart00853136 MutL_C MutL C terminal dimerisation domain. MutL a 99.66
PRK14868 795 DNA topoisomerase VI subunit B; Provisional 99.51
smart00433594 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomeras 99.41
PRK05644638 gyrB DNA gyrase subunit B; Validated 99.21
TIGR01059654 gyrB DNA gyrase, B subunit. This model describes t 99.21
PRK05218613 heat shock protein 90; Provisional 99.12
TIGR01055625 parE_Gneg DNA topoisomerase IV, B subunit, proteob 99.09
TIGR01052488 top6b DNA topoisomerase VI, B subunit. This model 99.06
PRK05559631 DNA topoisomerase IV subunit B; Reviewed 99.01
PRK14939756 gyrB DNA gyrase subunit B; Provisional 98.78
PRK04184535 DNA topoisomerase VI subunit B; Validated 98.42
TIGR01058637 parE_Gpos DNA topoisomerase IV, B subunit, Gram-po 93.01
COG1389538 DNA topoisomerase VI, subunit B [DNA replication, 84.57
COG0326623 HtpG Molecular chaperone, HSP90 family [Posttransl 82.01
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair] Back     alignment and domain information 
Probab=100.00  E-value=5e-119  Score=943.69  Aligned_cols=527  Identities=46%  Similarity=0.743  Sum_probs=470.1

Q ss_pred             CCCcchhHHHHhhhcceEEEeecCCCCCeEEEEEeCCeeccccccccCCCCcEEEEcccccccHHHHHhhcCchHHHHHH
Q 008397            1 MGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMESEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKI   80 (567)
Q Consensus         1 ~GFRGEALaSIs~VS~l~I~Tk~~~~~~g~~~~~~~G~~~~~~~~~a~~~GTtV~V~dLFyN~PvRrk~lks~~~e~~~I   80 (567)
                      |||||||||||||||||+|+||++++.|||++.|.||+|.+.|+||||++||+|+|+|||||+|+|||+|++.++|+.+|
T Consensus        97 yGFRGEALASiShVA~VtV~TK~~~~~cayrasY~DGkm~~~pKpcAgk~GT~I~vedLFYN~~~Rrkal~~~~EE~~ki  176 (694)
T KOG1979|consen   97 YGFRGEALASISHVAHVTVTTKTAEGKCAYRASYRDGKMIATPKPCAGKQGTIITVEDLFYNMPTRRKALRNHAEEYRKI  176 (694)
T ss_pred             cCccHHHHhhhhheeEEEEEEeecCceeeeEEEeeccccccCCCCccCCCceEEEehHhhccCHHHHHHhcCcHHHHHHH
Confidence            89999999999999999999999999999999999999998899999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhccCceEEEEEECCeeeeEEEcCCCCCHHHHHHHHhChhhhhccc-ccc-ccccCCCCCcceEEEEEEeCCC
Q 008397           81 VDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLV-QLE-ASEYNDSSSFVFKMDGYVSNSN  158 (567)
Q Consensus        81 ~~~v~~yAl~~p~V~F~l~~~~~~~~~l~t~~~~s~~~~i~~i~G~~~~~~l~-~v~-~~~~~~~~~~~~~v~G~is~~~  158 (567)
                      .++|++||+|+|+|+|+|++.|+....++|.+..+..|.|+.+||..++++|+ ++. +.+  ..  ..|+++||||+++
T Consensus       177 ~dlv~ryAIHn~~VsFs~rk~Gd~~~dl~t~~~~s~~D~ir~i~g~~Va~~ll~els~~~~--~~--l~f~~~g~Isn~n  252 (694)
T KOG1979|consen  177 MDLVGRYAIHNPRVSFSLRKQGDTVADLRTSVSCSREDNIRNIYGVSVAKNLLNELSKCDS--KL--LKFSAEGYISNAN  252 (694)
T ss_pred             HHHHHHHheeCCCcceEEeeccccccccccCCccccccchhhhhhhHHHHHHHHHhhhccC--ce--eEEeccceEechh
Confidence            99999999999999999999999899999999999999999999999999999 776 443  33  6789999999999


Q ss_pred             CCCCCceEEEEEcCeEeCCchHHHHHHHHhhccCCCCCCcEEEEEEEcCCCceeeccCCCCCeEecCChHHHHHHHHHHH
Q 008397          159 YVAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAV  238 (567)
Q Consensus       159 ~~~~k~~q~lFIN~R~V~~~~l~kaI~~~y~~~lp~~~~P~~~L~i~i~p~~vDVNvhPtK~eV~F~~e~~I~~~i~~~i  238 (567)
                      ++.++....+|||||+|+|..|+++|+.+|+.+||++.+||+||+|.++|++|||||||||+||+|+++++|++.|++.+
T Consensus       253 ~~akk~i~vlFIN~RLVes~~Lr~ale~VYa~yLpk~~~pFvYLsL~i~p~~vDVNVHPTK~eV~FL~qEeIie~I~~~i  332 (694)
T KOG1979|consen  253 YSAKKSILVLFINGRLVESDELRHALEEVYAAYLPKGHHPFVYLSLNIDPENVDVNVHPTKREVHFLNQEEIIERICQQI  332 (694)
T ss_pred             hhhhhheEEEEEcCcEeehHHHHHHHHHHHHHhcCCCCCceEEEEEecCHHHcccccCCCcceeEeecHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCcccccccccCCCCCCCCCCC--CCCCCCCCCccccCCCCcceecCCCCCCccccccccCCCC-C-CCCC-
Q 008397          239 ELKLRQSNDSRTYKEQTVESSPSSPYNPSK--DLHLNPSGSKLQKVPVNKMVRTDSSDPAGRLHAYVQSKPH-T-SVAS-  313 (567)
Q Consensus       239 ~~~L~~~~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~vr~d~~~~~~~l~~~~~~~~~-~-~~~~-  313 (567)
                      ...|.+.+.+|+|..|.+.|.......+.+  +...++..++++|.+++++||||++  +++|++|+..... . +..+ 
T Consensus       333 e~~L~~~d~er~~~~q~~iP~~~~~~~er~~~~~~~~~s~~ks~k~~~~~mVRtDss--e~ki~~fl~~~~~~~~s~~~~  410 (694)
T KOG1979|consen  333 EERLSALDTERTFLKQVMIPGPSTLKSERNKPSLKQSPSAQKSDKRYENKMVRTDSS--ERKIDSFLSPLTQVGSSNSTG  410 (694)
T ss_pred             HHHHhccCcccchhhhhcccCCccccccccCccccccccccccchhcccceeecccc--ccchhhhhCCccccCcccccc
Confidence            999999999999999998887653322211  1122445667778999999999999  9999999954321 0 0000 


Q ss_pred             ----CCCccc-------cc-hhhh---hhcccccccccccHHHHHHHhhhhcCCcccccccccEEEEEEcCcEEEEEECC
Q 008397          314 ----GPNLSA-------VR-SSVR---QRRNLNETADLTSIQELIDDVDRNCHSGLLDIVRHCSFIGMADDVYALLQHNT  378 (567)
Q Consensus       314 ----~~~~~~-------~~-~~~~---~~~~~~~~~~l~Sv~~l~~~i~~~~~~~l~~~~~~~~~VGqvd~~yiLiQ~~~  378 (567)
                          ....++       ++ +.+.   ..+++++.++|+||+.|+.+|..+.|..++++|++++|||++|..++|+||++
T Consensus       411 nes~~~~~s~~~~e~s~~p~dd~r~~~~~~~~rE~~~L~Si~~Lr~eV~~~~h~~l~e~~~n~~yVG~vd~~~alvQh~t  490 (694)
T KOG1979|consen  411 NESEQGDDSSLSNENSRLPEDDVRFEYTAKTPRERFRLESIKKLRKEVIDSCHVVLTEMFRNLSYVGVVDERTALVQHGT  490 (694)
T ss_pred             cccccccccccccccccCccchhhhhhccccchhccchhhHHHHHHHHHhhccHHHHHHHHhcceeeeechhhhhhhcCc
Confidence                000000       00 0111   11334434999999999999999999999999999999999999999999999


Q ss_pred             eEEEEechhHHHHHHHHHHHHHhcccCeEecCCCcchhHHHhhhccccccccccCcCchhHHHHHHHHHHHHHHHHHHHh
Q 008397          379 HMYLANVVSLSKELMYQLVLRRFAHFNAIQLSDPAPLSELLMLALKEEDLDVENSENDDLKEKIAEMNTELLKQKAEMLE  458 (567)
Q Consensus       379 ~LyLiDqhaa~eri~Yq~~l~~f~n~~~~~L~~P~~l~~Ll~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~~emL~  458 (567)
                      +||+||+..+++|+|||+++.+||||+.++|++|.++.+|++++++.+  +++|.++|++++.+++.+++.|.++++||.
T Consensus       491 ~Ly~~d~~~ls~ElfYQi~i~dF~Nfg~~~l~~p~~l~el~~l~l~~e--~~~~~~~d~~ke~~~~~~~e~l~~ka~ml~  568 (694)
T KOG1979|consen  491 SLYLCDTVSLSKELFYQILITDFGNFGKIRLSEPLPLSELLMLALESE--EPGWTADDGFKEKIARFAAEKLLEKADMLH  568 (694)
T ss_pred             eEEEechHHHHHHHHHHHHHHHhcccceeecCCCccHHHHHHHhccCc--cCCCCccchhHHHHHHHHHHHHhhhHHHHh
Confidence            999999999999999999999999999999999999999999998765  579999999999999999999999999999


Q ss_pred             hhcceEEecCCCccccCcccCCCCCCCCCHHHHHHHhcCCCCCchHHHHHHHHHHHHhhcccCCCCCCCCCCCCcce
Q 008397          459 EYFCVKIDTRGNLSRLPIILDQYTPDMDRIPEFVLCLGNDVDWEDEKCCFQAIAAALGNFYAMHPPLLPNPSGEGLQ  535 (567)
Q Consensus       459 eyFgi~Ie~~G~L~siP~ll~~y~P~~~~Lp~fl~~L~~~v~w~~E~~cf~~i~r~lA~fys~~~~~~~~~~~~~~~  535 (567)
                      |||||+|+++|.|.+||+|+.+|.|++++||.|++||+++|||++|++||++|||++|.||+..+...+-...+|..
T Consensus       569 dYFsi~i~e~g~l~~lP~L~~~y~P~le~lP~fi~rL~~~vdwedEk~cf~~i~r~ia~fY~~~t~~~~ls~~e~a~  645 (694)
T KOG1979|consen  569 DYFSIEIDEEGLLTGLPSLLHQYIPPLEKLPFFILRLGKEVDWEDEKECFEGICRAIATFYTLDTSSAQLSEVEGAT  645 (694)
T ss_pred             hheEEEEccCCceecCchhhcccCCChhhCcHHHHhhccccchHHHHHHHHHHHHHHHHHhccCccccccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999997655444433444443

>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK00095 mutL DNA mismatch repair protein; Reviewed Back     alignment and domain information
>TIGR00585 mutl DNA mismatch repair protein MutL Back     alignment and domain information
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair] Back     alignment and domain information
>cd03483 MutL_Trans_MLH1 MutL_Trans_MLH1: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH1 (MutL homologue 1) Back     alignment and domain information
>PF01119 DNA_mis_repair: DNA mismatch repair protein, C-terminal domain; InterPro: IPR013507 This entry represents the C-terminal domain of DNA mismatch repair proteins, such as MutL Back     alignment and domain information
>cd03482 MutL_Trans_MutL MutL_Trans_MutL: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to Escherichia coli MutL Back     alignment and domain information
>cd03485 MutL_Trans_hPMS_1_like MutL_Trans_hPMS1_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM1 (hPSM1) and yeast MLH2 Back     alignment and domain information
>cd03486 MutL_Trans_MLH3 MutL_Trans_MLH3: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH3 (MutL homologue 3) Back     alignment and domain information
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair] Back     alignment and domain information
>cd00782 MutL_Trans MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of DNA mismatch repair (MutL/MLH1/PMS2) family Back     alignment and domain information
>cd03484 MutL_Trans_hPMS_2_like MutL_Trans_hPMS2_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM2 (hPSM2) Back     alignment and domain information
>PRK14867 DNA topoisomerase VI subunit B; Provisional Back     alignment and domain information
>cd00329 TopoII_MutL_Trans MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of type II DNA topoisomerases (Topo II) and DNA mismatch repair (MutL/MLH1/PMS2) proteins Back     alignment and domain information
>PF08676 MutL_C: MutL C terminal dimerisation domain; InterPro: IPR014790 MutL and MutS are key components of the DNA repair machinery that corrects replication errors [] Back     alignment and domain information
>smart00853 MutL_C MutL C terminal dimerisation domain Back     alignment and domain information
>PRK14868 DNA topoisomerase VI subunit B; Provisional Back     alignment and domain information
>smart00433 TOP2c TopoisomeraseII Back     alignment and domain information
>PRK05644 gyrB DNA gyrase subunit B; Validated Back     alignment and domain information
>TIGR01059 gyrB DNA gyrase, B subunit Back     alignment and domain information
>PRK05218 heat shock protein 90; Provisional Back     alignment and domain information
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial Back     alignment and domain information
>TIGR01052 top6b DNA topoisomerase VI, B subunit Back     alignment and domain information
>PRK05559 DNA topoisomerase IV subunit B; Reviewed Back     alignment and domain information
>PRK14939 gyrB DNA gyrase subunit B; Provisional Back     alignment and domain information
>PRK04184 DNA topoisomerase VI subunit B; Validated Back     alignment and domain information
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive Back     alignment and domain information
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair] Back     alignment and domain information
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query567
3na3_A348 Mutl Protein Homolog 1 Isoform 1 From Homo Sapiens 2e-68
3rbn_A284 Crystal Structure Of Mutl Protein Homolog 1 Isoform 5e-37
1b62_A355 Mutl Complexed With Adp Length = 355 2e-16
1bkn_A352 Crystal Structure Of An N-Terminal 40kd Fragment Of 3e-16
4fmn_A288 Structure Of The C-terminal Domain Of The Saccharom 7e-16
4e4w_A285 Structure Of The C-terminal Domain Of The Saccharom 8e-16
1b63_A333 Mutl Complexed With Adpnp Length = 333 8e-16
1nhj_A333 Crystal Structure Of N-Terminal 40kd MutlA100P MUTA 3e-15
1ea6_A364 N-Terminal 40kda Fragment Of Nhpms2 Complexed With 9e-15
1h7s_A365 N-Terminal 40kda Fragment Of Human Pms2 Length = 36 9e-15
1h7u_A365 Hpms2-atpgs Length = 365 9e-15
3h4l_A367 Crystal Structure Of N Terminal Domain Of A Dna Rep 2e-14
>pdb|3NA3|A Chain A, Mutl Protein Homolog 1 Isoform 1 From Homo Sapiens Length = 348 Back     alignment and structure 
Iteration: 1

 Score =  256 bits (655), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 120/254 (47%), Positives = 178/254 (70%), Gaps = 4/254 (1%)
Query: 2   GFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMESEPKACAAVKGTQIMVENLFY 61
           GFRGEALAS+++V HVT+TT T      YR SY DG +++ PK CA  +GTQI VE+LFY
Sbjct: 99  GFRGEALASISHVAHVTITTKTADGKCAYRASYSDGKLKAPPKPCAGNQGTQITVEDLFY 158
Query: 62  NMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIR 121
           N+  RRK L+N S++Y KI++++ R ++H+  +SFS +K G   ADV ++  +S +D+IR
Sbjct: 159 NIATRRKALKNPSEEYGKILEVVGRYSVHNAGISFSVKKQGETVADVRTLPNASTVDNIR 218
Query: 122 TVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVECAPLK 181
           +++G +V+  L+++      +  +  FKM+GY+SN+NY  KK   +LF+N RLVE   L+
Sbjct: 219 SIFGNAVSRELIEIGC----EDKTLAFKMNGYISNANYSVKKCIFLLFINHRLVESTSLR 274
Query: 182 RAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVELK 241
           +A+E VYAA  PK + PF+Y+S+ + P++VDVNVHPTK EV  L++E I+E++Q  +E K
Sbjct: 275 KAIETVYAAYLPKNTHPFLYLSLEISPQNVDVNVHPTKHEVHFLHEESILERVQQHIESK 334
Query: 242 LRQSNDSRTYKEQT 255
           L  SN SR Y  QT
Sbjct: 335 LLGSNSSRMYFTQT 348
>pdb|3RBN|A Chain A, Crystal Structure Of Mutl Protein Homolog 1 Isoform 1 [homo Sapiens] Length = 284 Back     alignment and structure
>pdb|1B62|A Chain A, Mutl Complexed With Adp Length = 355 Back     alignment and structure
>pdb|1BKN|A Chain A, Crystal Structure Of An N-Terminal 40kd Fragment Of E. Coli Dna Mismatch Repair Protein Mutl Length = 352 Back     alignment and structure
>pdb|4FMN|A Chain A, Structure Of The C-terminal Domain Of The Saccharomyces Cerevisiae Mutl Alpha (mlh1/pms1) Heterodimer Bound To A Fragment Of Ntg2 Length = 288 Back     alignment and structure
>pdb|4E4W|A Chain A, Structure Of The C-terminal Domain Of The Saccharomyces Cerevisiae Mutl Alpha (mlh1/pms1) Heterodimer Length = 285 Back     alignment and structure
>pdb|1B63|A Chain A, Mutl Complexed With Adpnp Length = 333 Back     alignment and structure
>pdb|1NHJ|A Chain A, Crystal Structure Of N-Terminal 40kd MutlA100P MUTANT PROTEIN COMPLEX With Adpnp And One Sodium Length = 333 Back     alignment and structure
>pdb|1EA6|A Chain A, N-Terminal 40kda Fragment Of Nhpms2 Complexed With Adp Length = 364 Back     alignment and structure
>pdb|1H7S|A Chain A, N-Terminal 40kda Fragment Of Human Pms2 Length = 365 Back     alignment and structure
>pdb|1H7U|A Chain A, Hpms2-atpgs Length = 365 Back     alignment and structure
>pdb|3H4L|A Chain A, Crystal Structure Of N Terminal Domain Of A Dna Repair Prote Length = 367 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query567
3na3_A348 DNA mismatch repair protein MLH1; MUTL protein hom 1e-105
1h7s_A365 PMS1 protein homolog 2; DNA repair, GHL ATPase, mi 2e-84
3h4l_A367 DNA mismatch repair protein PMS1; ATP binding, DNA 4e-83
3rbn_A284 DNA mismatch repair protein MLH1; structural genom 2e-76
1b63_A333 MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A 4e-48
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-09
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens} Length = 348 Back     alignment and structure
 Score =  319 bits (819), Expect = e-105
 Identities = 120/255 (47%), Positives = 178/255 (69%), Gaps = 4/255 (1%)

Query: 1   MGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMESEPKACAAVKGTQIMVENLF 60
            GFRGEALAS+++V HVT+TT T      YR SY DG +++ PK CA  +GTQI VE+LF
Sbjct: 98  YGFRGEALASISHVAHVTITTKTADGKCAYRASYSDGKLKAPPKPCAGNQGTQITVEDLF 157

Query: 61  YNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSI 120
           YN+  RRK L+N S++Y KI++++ R ++H+  +SFS +K G   ADV ++  +S +D+I
Sbjct: 158 YNIATRRKALKNPSEEYGKILEVVGRYSVHNAGISFSVKKQGETVADVRTLPNASTVDNI 217

Query: 121 RTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVECAPL 180
           R+++G +V+  L+++   +     +  FKM+GY+SN+NY  KK   +LF+N RLVE   L
Sbjct: 218 RSIFGNAVSRELIEIGCED----KTLAFKMNGYISNANYSVKKCIFLLFINHRLVESTSL 273

Query: 181 KRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVEL 240
           ++A+E VYAA  PK + PF+Y+S+ + P++VDVNVHPTK EV  L++E I+E++Q  +E 
Sbjct: 274 RKAIETVYAAYLPKNTHPFLYLSLEISPQNVDVNVHPTKHEVHFLHEESILERVQQHIES 333

Query: 241 KLRQSNDSRTYKEQT 255
           KL  SN SR Y  QT
Sbjct: 334 KLLGSNSSRMYFTQT 348
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A* Length = 365 Back     alignment and structure
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae} Length = 367 Back     alignment and structure
>3rbn_A DNA mismatch repair protein MLH1; structural genomics, structural genomics consortium, SGC, DN mismatch repair, endonucleases, protein binding; HET: DNA; 2.16A {Homo sapiens} Length = 284 Back     alignment and structure
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A* Length = 333 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query567
3na3_A348 DNA mismatch repair protein MLH1; MUTL protein hom 100.0
3h4l_A367 DNA mismatch repair protein PMS1; ATP binding, DNA 100.0
1h7s_A365 PMS1 protein homolog 2; DNA repair, GHL ATPase, mi 100.0
3rbn_A284 DNA mismatch repair protein MLH1; structural genom 100.0
1b63_A333 MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A 100.0
3kdg_A197 DNA mismatch repair protein MUTL; endonuclease, DN 99.76
3ncv_A220 DNA mismatch repair protein MUTL; endonuclease, di 99.75
3cwv_A369 DNA gyrase, B subunit, truncated; structural genom 99.74
1s16_A390 Topoisomerase IV subunit B; two-domain protein com 99.72
1x9z_A188 DNA mismatch repair protein MUTL; alpha-beta fold, 99.65
1ei1_A391 DNA gyrase B, GYRB; ATPase domain, dimer, isomeras 99.63
1y4s_A559 Chaperone protein HTPG; HSP90, molecular chaperone 99.55
1kij_A390 DNA gyrase subunit B; topoisomerase, gyrase B-coum 99.55
3fv5_A201 DNA topoisomerase 4 subunit B; topoisomerase IV B 99.54
2ioq_A624 Chaperone protein HTPG; heat shock protein, HSP90; 99.53
2o1u_A666 Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, 99.32
3t0h_A228 Heat shock protein HSP 90-alpha; chaperone, ATPase 99.0
4duh_A220 DNA gyrase subunit B; structure-based drug design, 98.92
3o0i_A256 HSP90AA1 protein; HSP90 heat-shock proteins, chape 98.85
4emv_A226 DNA topoisomerase IV, B subunit; protein-inhibitor 98.67
1zxm_A400 TOPO IIA ATPase, DNA topoisomerase II, alpha isozy 98.64
3lnu_A408 Topoisomerase IV subunit B; PARE, ATP-binding, nuc 98.47
3ttz_A198 DNA gyrase subunit B; protein-inhibitor complex, A 98.43
2q2e_B621 Type 2 DNA topoisomerase 6 subunit B; DNA-binding, 98.17
2zbk_B530 Type 2 DNA topoisomerase 6 subunit B; DNA binding 98.16
1mu5_A471 Type II DNA topoisomerase VI subunit B; GHKL ATPas 98.11
2ior_A235 Chaperone protein HTPG; heat shock protein, HSP90; 98.03
2gqp_A236 Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, 97.52
1yc1_A264 HSP 86, heat shock protein HSP 90-alpha; cell-cycl 97.29
2wer_A220 ATP-dependent molecular chaperone HSP82; ATPase, A 97.26
1qy5_A269 Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: N 96.85
2cg9_A677 ATP-dependent molecular chaperone HSP82; chaperone 95.67
3peh_A281 Endoplasmin homolog; structural genomics, structur 95.43
3nmq_A239 Heat shock protein HSP 90-beta; ATPase, chaperone- 94.96
1pvg_A418 DNA topoisomerase II; GHKL ATPase domain; HET: DNA 92.19
3ied_A272 Heat shock protein; HSP90, chaperone, structural g 87.28
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=4.6e-60  Score=493.68  Aligned_cols=251  Identities=48%  Similarity=0.841  Sum_probs=205.2

Q ss_pred             CCCcchhHHHHhhhcceEEEeecCCCCCeEEEEEeCCeeccccccccCCCCcEEEEcccccccHHHHHhhcCchHHHHHH
Q 008397            1 MGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMESEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKI   80 (567)
Q Consensus         1 ~GFRGEALaSIs~VS~l~I~Tk~~~~~~g~~~~~~~G~~~~~~~~~a~~~GTtV~V~dLFyN~PvRrk~lks~~~e~~~I   80 (567)
                      +|||||||+||++||+|+|+||++++..||++.|++|++....+|++++.||+|+|+|||||+|+|||+|++.+.|+.+|
T Consensus        98 ~GfrGeaL~Si~avs~l~v~sr~~~~~~~~~~~~~~G~~~~~~~~~~~~~GTtV~v~~LF~n~P~R~k~lk~~~~e~~~i  177 (348)
T 3na3_A           98 YGFRGEALASISHVAHVTITTKTADGKCAYRASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRRKALKNPSEEYGKI  177 (348)
T ss_dssp             -CCTTCHHHHHHHSSEEEEEEECTTCSSEEEEEEETTEESSCCEEECCCSEEEEEEESTTTTCHHHHHTSCCHHHHHHHH
T ss_pred             CCcCChHHHHhhcccEEEEEEEECCCCceEEEEEeCCEEeeeeeEecCCCCcEEEECcccccCchhhhhccccHHHHHHH
Confidence            69999999999999999999999999999999999999875568889999999999999999999999999999999999


Q ss_pred             HHHHHhhhhccCceEEEEEECCeeeeEEEcCCCCCHHHHHHHHhChhhhhccccccccccCCCCCcceEEEEEEeCCCCC
Q 008397           81 VDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYV  160 (567)
Q Consensus        81 ~~~v~~yAl~~p~V~F~l~~~~~~~~~l~t~~~~s~~~~i~~i~G~~~~~~l~~v~~~~~~~~~~~~~~v~G~is~~~~~  160 (567)
                      .++|++||++||+|+|+|+++|+....++|.+++++.++|.++||.+++++|++++.+.  +.  .+++++||||.|+++
T Consensus       178 ~~~l~~~Al~~p~v~f~l~~~g~~~~~~~~~~~~~~~~~i~~i~G~~~~~~l~~v~~~~--~~--~~~~i~G~is~p~~~  253 (348)
T 3na3_A          178 LEVVGRYSVHNAGISFSVKKQGETVADVRTLPNASTVDNIRSIFGNAVSRELIEIGCED--KT--LAFKMNGYISNANYS  253 (348)
T ss_dssp             HHHHHHHHHHCTTCEEEEEETTCSSCSEECCTTCCHHHHHHHHHCHHHHTTEEEEEEEE--GG--GTEEEEEEEECSSCC
T ss_pred             HHHHHHHHhhCCCeEEEEEECCEEEEEeecCCCCCHHHHHHHHhChHhHhhcEEEEeec--CC--ccEEEEEEEeCCccC
Confidence            99999999999999999999997666789999999999999999999999999998876  22  369999999999988


Q ss_pred             CCCceEEEEEcCeEeCCchHHHHHHHHhhccCCCCCCcEEEEEEEcCCCceeeccCCCCCeEecCChHHHHHHHHHHHHH
Q 008397          161 AKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVEL  240 (567)
Q Consensus       161 ~~k~~q~lFIN~R~V~~~~l~kaI~~~y~~~lp~~~~P~~~L~i~i~p~~vDVNvhPtK~eV~F~~e~~I~~~i~~~i~~  240 (567)
                      +++..||+|||||+|.++.|.++|+++|+.++|+++||+++|+|+|||+.|||||||+|+||+|.+|++|++.|+++|++
T Consensus       254 ~~~~~q~~fVNgR~v~~~~l~~ai~~~y~~~l~~~~~P~~~L~l~~~p~~vDVNvhP~K~eV~f~~e~~i~~~i~~~v~~  333 (348)
T 3na3_A          254 VKKCIFLLFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDVNVHPTKHEVHFLHEESILERVQQHIES  333 (348)
T ss_dssp             BSSCEEEEEETTEECCCTTHHHHHHHHHHTTSCTTCBCEEEEEEECC----------------------CTHHHHHHHHH
T ss_pred             CCcccEEEEECCeEecCHHHHHHHHHHHHHhCcCCCceEEEEEEEeChhheeeeeCCCcCEEEEcCHHHHHHHHHHHHHH
Confidence            77889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCccccccc
Q 008397          241 KLRQSNDSRTYKEQT  255 (567)
Q Consensus       241 ~L~~~~~~r~~~~~~  255 (567)
                      +|...+++|+|.+|+
T Consensus       334 ~l~~~~~sr~f~~~~  348 (348)
T 3na3_A          334 KLLGSNSSRMYFTQT  348 (348)
T ss_dssp             HHC------------
T ss_pred             HHhcCCCcceeeccC
Confidence            999999999998764
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A* Back     alignment and structure
>3rbn_A DNA mismatch repair protein MLH1; structural genomics, structural genomics consortium, SGC, DN mismatch repair, endonucleases, protein binding; HET: DNA; 2.16A {Homo sapiens} Back     alignment and structure
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A* Back     alignment and structure
>3kdg_A DNA mismatch repair protein MUTL; endonuclease, DNA damage, DNA repair, hydrolase; HET: DNA; 2.00A {Bacillus subtilis} PDB: 3gab_A* 3kdk_A* Back     alignment and structure
>3ncv_A DNA mismatch repair protein MUTL; endonuclease, dimer, hydrolase; HET: DNA; 2.40A {Neisseria gonorrhoeae} Back     alignment and structure
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus} Back     alignment and structure
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Back     alignment and structure
>1x9z_A DNA mismatch repair protein MUTL; alpha-beta fold, dimer, replication, signaling protein; HET: DNA MSE; 2.10A {Escherichia coli} SCOP: d.292.1.1 Back     alignment and structure
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Back     alignment and structure
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A Back     alignment and structure
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2 Back     alignment and structure
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A* Back     alignment and structure
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A Back     alignment and structure
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A Back     alignment and structure
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ... Back     alignment and structure
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A* Back     alignment and structure
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A* Back     alignment and structure
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A* Back     alignment and structure
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A* Back     alignment and structure
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A* Back     alignment and structure
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A* Back     alignment and structure
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} Back     alignment and structure
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} Back     alignment and structure
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A* Back     alignment and structure
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli} Back     alignment and structure
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A* Back     alignment and structure
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A* Back     alignment and structure
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A Back     alignment and structure
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A* Back     alignment and structure
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} Back     alignment and structure
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A* Back     alignment and structure
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1 Back     alignment and structure
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A* Back     alignment and structure
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 567
d1b63a2218 d.122.1.2 (A:-2-216) DNA mismatch repair protein M 3e-21
d1b63a1115 d.14.1.3 (A:217-331) DNA mismatch repair protein M 2e-20
d1h7sa1134 d.14.1.3 (A:232-365) DNA mismatch repair protein P 4e-19
d1h7sa2203 d.122.1.2 (A:29-231) DNA mismatch repair protein P 2e-18
d2hkja3219 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {A 4e-08
>d1b63a2 d.122.1.2 (A:-2-216) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]} Length = 218 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: DNA gyrase/MutL, N-terminal domain
domain: DNA mismatch repair protein MutL
species: Escherichia coli [TaxId: 562]

 Score = 90.6 bits (224), Expect = 3e-21
 Identities = 33/124 (26%), Positives = 60/124 (48%), Gaps = 1/124 (0%)

Query: 1   MGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMESEPKACAAVKGTQIMVENLF 60
           +GFRGEALAS++ V  +T+T+ T      ++       M    K  A   GT + V +LF
Sbjct: 94  LGFRGEALASISSVSRLTLTSRTAEQQEAWQAYAEGRDMNVTVKPAAHPVGTTLEVLDLF 153

Query: 61  YNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSS-RLDS 119
           YN  ARRK L+    ++  I +++ R+A+   +V+ +   +G       ++     +   
Sbjct: 154 YNTPARRKFLRTEKTEFNHIDEIIRRIALARFDVTINLSHNGKIVRQYRAVPEGGQKERR 213

Query: 120 IRTV 123
           +  +
Sbjct: 214 LGAI 217
>d1b63a1 d.14.1.3 (A:217-331) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]} Length = 115 Back     information, alignment and structure
>d1h7sa1 d.14.1.3 (A:232-365) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} Length = 134 Back     information, alignment and structure
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} Length = 203 Back     information, alignment and structure
>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} Length = 219 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query567
d1b63a1115 DNA mismatch repair protein MutL {Escherichia coli 99.96
d1b63a2218 DNA mismatch repair protein MutL {Escherichia coli 99.96
d1h7sa2203 DNA mismatch repair protein PMS2 {Human (Homo sapi 99.95
d1h7sa1134 DNA mismatch repair protein PMS2 {Human (Homo sapi 99.93
d1x9za_182 DNA mismatch repair protein MutL {Escherichia coli 99.58
d2hkja3219 Topoisomerase VI-B subunit {Archaeon Sulfolobus sh 98.84
d1s14a_168 Topoisomerase IV subunit B {Escherichia coli [TaxI 89.41
d1ei1a2219 DNA gyrase B {Escherichia coli [TaxId: 562]} 86.6
d1kija2212 DNA gyrase B {Thermus thermophilus [TaxId: 274]} 82.08
>d1b63a1 d.14.1.3 (A:217-331) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: DNA gyrase/MutL, second domain
domain: DNA mismatch repair protein MutL
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=1.9e-29  Score=220.90  Aligned_cols=113  Identities=22%  Similarity=0.351  Sum_probs=106.5

Q ss_pred             ChhhhhccccccccccCCCCCcceEEEEEEeCCCCCCC-C-ceEEEEEcCeEeCCchHHHHHHHHhhccCCCCCCcEEEE
Q 008397          125 GVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAK-K-TTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYM  202 (567)
Q Consensus       125 G~~~~~~l~~v~~~~~~~~~~~~~~v~G~is~~~~~~~-k-~~q~lFIN~R~V~~~~l~kaI~~~y~~~lp~~~~P~~~L  202 (567)
                      |.+++++|++++.+.      .+++++||||.|+.+++ + ..||+|||||+|.++.|.++|.++|+.++|+++||+++|
T Consensus         1 G~~~~~~li~v~~~~------~~~~i~G~is~P~~~~~~~~~~q~~fVN~R~V~~~~l~~ai~~~y~~~l~~~~~P~~~L   74 (115)
T d1b63a1           1 GTAFLEQALAIEWQH------GDLTLRGWVADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVL   74 (115)
T ss_dssp             CHHHHHHEEEEEEEE------TTEEEEEEEECGGGCCTTGGGCEEEEETTEECCCHHHHHHHHHHHHHHSSSCCCCCEEE
T ss_pred             ChhHHhcceEEEEEC------CCEEEEEEEeCchhhccCCCCcEEEEEcCCeEchHHHHHHHHHHHHHhccCCCCceEEE
Confidence            788999999999988      88999999999987643 3 469999999999999999999999999999999999999


Q ss_pred             EEEcCCCceeeccCCCCCeEecCChHHHHHHHHHHHHHHHh
Q 008397          203 SIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVELKLR  243 (567)
Q Consensus       203 ~i~i~p~~vDVNvhPtK~eV~F~~e~~I~~~i~~~i~~~L~  243 (567)
                      +|+|||+.|||||||+|+||+|.+|+.|.+.|.++|+++|+
T Consensus        75 ~l~i~p~~vDVNVhP~K~eV~f~~e~~i~~~i~~~v~~~L~  115 (115)
T d1b63a1          75 YLEIDPHQVDVNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQ  115 (115)
T ss_dssp             EEECCGGGEECTTSTTCCCCEETTHHHHHHHHHHHHHHHTC
T ss_pred             EEEEcccEEEEEeCCCccEEEEcCHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999873
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h7sa1 d.14.1.3 (A:232-365) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x9za_ d.292.1.1 (A:) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} Back     information, alignment and structure
>d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure