Citrus Sinensis ID: 008429

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-----
MSDLEAPLRPKRKKGIADFLVQFRWILVVFVVLPISVTIYFLIYLGDVKSDMKSYKKRQKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQGTLGLLVSAEIKLIPIKEYMKLTYKPVASNLREIAQAYADSFAPRDGDQDNQAKVPDFVEGMIYTSTEAVFMTGRYASKEEAKKKGNVINSVGWWFKPWFYQHAATALKRGEFTEYIPTREYYHRHTRSLYWEGKLILPFGDQFWFRFLFGWMMPPKVSLLKATQGEAIRNYYHQNHVIQDMLVPLYKVGDALEWQHREVYPLWLCPHRLYKLPYKTMVYPEPGFEHHRRQGDTSYAQMYTDVGVYYAPGPILRGEVFDGAEAVRKMEQWLIENGGFQPQYAVSELSEKNFWRMFDADLYEKCRKKYKAVGTFMSVYYKSKKGRKTEKEVQEAEQAQLEPAYAEVDQPID
cccccccccccHHHHHHHHHHHcccEEEEEEEcccccccHHHHHHHccccccccccccccccHHHHHHHHHHHHHHccccccccEEcccccEEcccccccccccccEEEEcccccccEEEEccccEEEEcccccHHHHHHHHccccccccccccccccEEcccccccccccccEEcccccccEEEEEEEEccccEEEEcccccccHHHHccccccccEEEEEEEEEEEEEcccEEEEEEEcccccHHHHHHHHHHHcccccccccccccccccEEcccccccEEEEEEcccccHHHHHccccEEEcccccccccccHHHHHHHHcccccccccccHHHHHccccHHHHHHcccccccccHHHHHHHcccccHHHHHHHcHHHHHHccccccccEEEEEEccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHccHHHHHHHHHcccccccccHHHHHHHcccccHHHHHHHHHHHHcccccccccccc
ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccEEEEcccccEEEcccccccccccccEEEccccccEEEEcccccEEEEcccccHHHHHHHHcHccccccccccccccEEEcEEEccccccccccccccHHHEEEEEEEEcccEEEEEcccccccHHHHccccccccHEEEEEEEEEEEEcccEEEEEEEEcccHHHHHHHHHHHHHHHHccccccccccccEEEEEEEccccEEEEEEEEcccccccccccccccccccccHHHHHHHHHHHcccccEEEEcHHHHHHEcccccHHEHHHHccccccHHHHHHHHHHccccHHHHHHcHHHHHccccccccEEEEEEccHHHHHHHHHHHccccccEEEcccEcccccccccccccccccccccccccccccEEEEEEEEcccccccccccccHHHHHHHHHHHHHHcccccEEEEcccccHHHHHHHHccHHHHHHHHHcccccccHHHHHHHHHHHcHHHHHHHHHHHHHcccccccccccc
msdleaplrpkrkKGIADFLVQFRWILVVFVVLPISVTIYFLIYLGDVKSDMKSYKKRQKEHDENVKKVVKRLKernpskdglvctarkpwiavgmrnvdykraRHFEVDLSAFRNILDidkdrmiakveplvnmgqisratcpmNLSLAVVAelddltvgglingygiegsshiygLFSDTVVAYEIVLADGqvvratkdneykdlfyaipwsqgtlgLLVSAEIKLipikeymkltyKPVASNLREIAQAYAdsfaprdgdqdnqakvpdfveGMIYTSTEAVFMTGRYASKEEAKKKGNVINSVGWWFKPWFYQHAATALkrgefteyiptreyyhrhtrslywegklilpfgdqfWFRFlfgwmmppkvsLLKATQGEAIRNYYHQNHVIQDMLVPLYkvgdalewqhrevyplwlcphrlyklpyktmvypepgfehhrrqgdtsyAQMYTDvgvyyapgpilrgevfdGAEAVRKMEQWLIenggfqpqyAVSELSEKNFWRMFDADLYEKCRKKYKAVGTFMSVYYKSKKGRKTEKEVQEAEQAQlepayaevdqpid
msdleaplrpkrkkgiADFLVQFRWILVVFVVLPISVTIYFLIYLGDVKSDMKSYKkrqkehdenvkkvvkrlkernpskdglvctarkpwiavgmrnvdYKRARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQGTLGLLVSAEIKLIPIKEYMKLTYKPVASNLREIAQAYADSfaprdgdqdNQAKVPDFVEGMIYTSTEAVFMTGRYASKEEAKKKGNVINSVGWWFKPWFYQHAATALKRGEFTEYIPTREYYHRHTRSLYWEGKLILPFGDQFWFRFLFGWMMPPKVSLLKATQGEAIRNYYHQNHVIQDMLVPLYKVGDALEWQHREVYPLWLCPHRLYKLPYKTMVYPEPGFEHHRRQGDTSYAQMYTDVGVYYAPGPILRGEVFDGAEAVRKMEQWLIENGGFQPQYAVSELSEKNFWRMFDADLYEKCRKKYKAVGTFMSVYykskkgrktEKEVQEaeqaqlepayaevdqpid
MSDLEAPLRPKRKKGIADFLVQFRWILVVFVVLPISVTIYFLIYLGDVKSDMKSYKKRQKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQGTLGLLVSAEIKLIPIKEYMKLTYKPVASNLREIAQAYADSFAPRDGDQDNQAKVPDFVEGMIYTSTEAVFMTGRYASKEEAKKKGNVINSVGWWFKPWFYQHAATALKRGEFTEYIPTREYYHRHTRSLYWEGKLILPFGDQFWFRFLFGWMMPPKVSLLKATQGEAIRNYYHQNHVIQDMLVPLYKVGDALEWQHREVYPLWLCPHRLYKLPYKTMVYPEPGFEHHRRQGDTSYAQMYTDVGVYYAPGPILRGEVFDGAEAVRKMEQWLIENGGFQPQYAVSELSEKNFWRMFDADLYEKCRKKYKAVGTFMSVYYKSKKGRKTEKEVQEAEQAQLEPAYAEVDQPID
**************GIADFLVQFRWILVVFVVLPISVTIYFLIYLGDV*********************************GLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQGTLGLLVSAEIKLIPIKEYMKLTYKPVASNLREIAQAYAD**************VPDFVEGMIYTSTEAVFMTGRYASKE*AKKKGNVINSVGWWFKPWFYQHAATALKRGEFTEYIPTREYYHRHTRSLYWEGKLILPFGDQFWFRFLFGWMMPPKVSLLKATQGEAIRNYYHQNHVIQDMLVPLYKVGDALEWQHREVYPLWLCPHRLYKLPYKTMVYPEPGFEHHRRQGDTSYAQMYTDVGVYYAPGPILRGEVFDGAEAVRKMEQWLIENGGFQPQYAVSELSEKNFWRMFDADLYEKCRKKYKAVGTFMSVYYK*******************************
*************KGIADFLVQFRWILVVFVVLPISVTIYFLIYLGDVKSDMKSY*K*****DENVKKVVKRLKERNPSKDGLVCTARKPWIA*GMRNV*YKRARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQGTLGLLVSAEIKLIPIKEYMKLTYKPVASNLREIAQAYADSFAPRDGDQDNQAKVPDFVEGMIYTSTEAVFMTGRYASKEEAKKKGNVINSVGWWFKPWFYQHAATALKRGEFTEYIPTREYYHRHTRSLYWEGKLILPFGDQFWFRFLFGWMMPPKVSLLKATQGEAIRNYYHQNHVIQDMLVPLYKVGDALEWQHREVYPLWLCPHRLYKL******YPEPGFEHHRRQGDTSYAQMYTDVGVYYAPGPILRGEVFDGAEAVRKMEQWLIENGGFQPQYAVSELSEKNFWRMFDADLYEKCRKKYKAVGTFMSVYYKS******************************
*********PKRKKGIADFLVQFRWILVVFVVLPISVTIYFLIYLGDVKSD**************VKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQGTLGLLVSAEIKLIPIKEYMKLTYKPVASNLREIAQAYADSFAPRDGDQDNQAKVPDFVEGMIYTSTEAVFMTGRYASKEEAKKKGNVINSVGWWFKPWFYQHAATALKRGEFTEYIPTREYYHRHTRSLYWEGKLILPFGDQFWFRFLFGWMMPPKVSLLKATQGEAIRNYYHQNHVIQDMLVPLYKVGDALEWQHREVYPLWLCPHRLYKLPYKTMVYPEPGFEHHRRQGDTSYAQMYTDVGVYYAPGPILRGEVFDGAEAVRKMEQWLIENGGFQPQYAVSELSEKNFWRMFDADLYEKCRKKYKAVGTFMSVYYKS******************EPAYAEVDQPID
*****APLRPKRKKGIADFLVQFRWILVVFVVLPISVTIYFLIYLGDVKSDMKSYKKRQKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQGTLGLLVSAEIKLIPIKEYMKLTYKPVASNLREIAQAYADSFAPRDGDQDNQAKVPDFVEGMIYTSTEAVFMTGRYASKEEAKKKGNVINSVGWWFKPWFYQHAATALKRGEFTEYIPTREYYHRHTRSLYWEGKLILPFGDQFWFRFLFGWMMPPKVSLLKATQGEAIRNYYHQNHVIQDMLVPLYKVGDALEWQHREVYPLWLCPHRLYKLPYKTMVYPEPGFEHHRRQGDTSYAQMYTDVGVYYAPGPILRGEVFDGAEAVRKMEQWLIENGGFQPQYAVSELSEKNFWRMFDADLYEKCRKKYKAVGTFMSVYYKSKKGRKTE*E**EAE*******YAEV*****
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSDLEAPLRPKRKKGIADFLVQFRWILVVFVVLPISVTIYFLIYLGDVKSDMKSYKKRQKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQGTLGLLVSAEIKLIPIKEYMKLTYKPVASNLREIAQAYADSFAPRDGDQDNQAKVPDFVEGMIYTSTEAVFMTGRYASKEEAKKKGNVINSVGWWFKPWFYQHAATALKRGEFTEYIPTREYYHRHTRSLYWEGKLILPFGDQFWFRFLFGWMMPPKVSLLKATQGEAIRNYYHQNHVIQDMLVPLYKVGDALEWQHREVYPLWLCPHRLYKLPYKTMVYPEPGFEHHRRQGDTSYAQMYTDVGVYYAPGPILRGEVFDGAEAVRKMEQWLIENGGFQPQYAVSELSEKNFWRMFDADLYEKCRKKYKAVGTFMSVYYKSKKGRKTEKEVQEAEQAQLEPAYAEVDQPID
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query565 2.2.26 [Sep-21-2011]
P93472567 Delta(24)-sterol reductas N/A no 1.0 0.996 0.835 0.0
Q39085561 Delta(24)-sterol reductas yes no 0.987 0.994 0.792 0.0
Q15392516 Delta(24)-sterol reductas yes no 0.870 0.953 0.410 1e-105
Q60HC5516 Delta(24)-sterol reductas N/A no 0.870 0.953 0.410 1e-105
Q5BQE6516 Delta(24)-sterol reductas yes no 0.870 0.953 0.410 1e-105
Q8VCH6516 Delta(24)-sterol reductas yes no 0.870 0.953 0.410 1e-105
O17397525 Diminuto-like protein OS= yes no 0.886 0.954 0.347 1e-87
P72056461 Probable decaprenylphosph no no 0.267 0.327 0.267 9e-10
P58710440 L-gulonolactone oxidase O no no 0.244 0.313 0.237 4e-07
P94535470 Glycolate oxidase subunit yes no 0.288 0.346 0.285 8e-07
>sp|P93472|DIM_PEA Delta(24)-sterol reductase OS=Pisum sativum GN=DIM PE=1 SV=1 Back     alignment and function desciption
 Score =  997 bits (2577), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/567 (83%), Positives = 515/567 (90%), Gaps = 2/567 (0%)

Query: 1   MSDLEAPLRPKRKKGIADFLVQFRWILVVFVVLPISVTIYFLIYLGDVKSDMKSYKKRQK 60
           MSDLEAPLRPKRKK   D+ V+FRWILV+FVVLPIS T+YFL YLGDV+S+ KS+K RQK
Sbjct: 1   MSDLEAPLRPKRKKIWVDYFVKFRWILVIFVVLPISFTLYFLTYLGDVRSEWKSFKTRQK 60

Query: 61  EHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILDI 120
           EHDENV+KVV RLK+RNPSKDGLVCTARKPW+AVGMRNVDYKRARHFEVDLS FRNILDI
Sbjct: 61  EHDENVQKVVNRLKKRNPSKDGLVCTARKPWVAVGMRNVDYKRARHFEVDLSPFRNILDI 120

Query: 121 DKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDLTVGGLINGYGIEGSSHIYGLFS 180
           DK+RMIA+VEPLVNMGQI+R T PMNL+LAVVAELDDLTVGGLINGYGIEGSSH YGLFS
Sbjct: 121 DKERMIARVEPLVNMGQITRVTVPMNLALAVVAELDDLTVGGLINGYGIEGSSHKYGLFS 180

Query: 181 DTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQGTLGLLVSAEIKLIPIKEYMKLTYK 240
           DTVVA+EI+LADG +V+ATKDNEY DLFYAIPWSQGTLGLLV+AE+KLIPIKEYMKLTYK
Sbjct: 181 DTVVAFEIILADGSLVKATKDNEYSDLFYAIPWSQGTLGLLVAAEVKLIPIKEYMKLTYK 240

Query: 241 PVASNLREIAQAYADSFAPRDGDQDNQAKVPDFVEGMIYTSTEAVFMTGRYASKEEAKKK 300
           PV  NL++IAQAY+DSFAPRDGDQDN  KVPDFVE MIY+ T AV MTGRYASKEEAKKK
Sbjct: 241 PVVGNLKDIAQAYSDSFAPRDGDQDNDEKVPDFVETMIYSPTRAVCMTGRYASKEEAKKK 300

Query: 301 GNVINSVGWWFKPWFYQHAATALKRGEFTEYIPTREYYHRHTRSLYWEGKLILPFGDQFW 360
           GN IN+VGWW+K WFYQHA TALK+G F EYIPTREYYHRHTR LYWEGKLILPFGDQF 
Sbjct: 301 GNKINNVGWWYKTWFYQHAETALKKGLFVEYIPTREYYHRHTRCLYWEGKLILPFGDQFS 360

Query: 361 FRFLFGWMMPPKVSLLKATQGEAIRNYYHQNHVIQDMLVPLYKVGDALEWQHR--EVYPL 418
           FRFLFGW+MPPKVSLLKATQGEAIRNYYH+ HVIQDMLVPLYKVGDALEW  R  E+YP+
Sbjct: 361 FRFLFGWLMPPKVSLLKATQGEAIRNYYHEMHVIQDMLVPLYKVGDALEWSDREMEIYPI 420

Query: 419 WLCPHRLYKLPYKTMVYPEPGFEHHRRQGDTSYAQMYTDVGVYYAPGPILRGEVFDGAEA 478
           WLCPH+L+KLP KTM+YPE GFE  RRQGDT  AQM+TDVGVYYAPGP+LRGEVFDGAEA
Sbjct: 421 WLCPHKLFKLPIKTMIYPEAGFELQRRQGDTQNAQMFTDVGVYYAPGPVLRGEVFDGAEA 480

Query: 479 VRKMEQWLIENGGFQPQYAVSELSEKNFWRMFDADLYEKCRKKYKAVGTFMSVYYKSKKG 538
           VRKME W+IEN  FQPQYAVSEL+EKNFWRMFDA LYE CR+KY AVGTFMSVYYK KKG
Sbjct: 481 VRKMESWMIENHCFQPQYAVSELNEKNFWRMFDAGLYEHCRRKYGAVGTFMSVYYKCKKG 540

Query: 539 RKTEKEVQEAEQAQLEPAYAEVDQPID 565
           RKTEKEV+EAEQA L+ AY EVDQP D
Sbjct: 541 RKTEKEVREAEQAHLDTAYPEVDQPPD 567
Plays a critical role in the general process of plant cell elongation.
Pisum sativum (taxid: 3888)
EC: 1EC: .EC: 3EC: .EC: 1EC: .EC: 7EC: 2
>sp|Q39085|DIM_ARATH Delta(24)-sterol reductase OS=Arabidopsis thaliana GN=DIM PE=1 SV=2 Back     alignment and function description
>sp|Q15392|DHC24_HUMAN Delta(24)-sterol reductase OS=Homo sapiens GN=DHCR24 PE=1 SV=2 Back     alignment and function description
>sp|Q60HC5|DHC24_MACFA Delta(24)-sterol reductase OS=Macaca fascicularis GN=DHCR24 PE=2 SV=2 Back     alignment and function description
>sp|Q5BQE6|DHC24_RAT Delta(24)-sterol reductase OS=Rattus norvegicus GN=Dhcr24 PE=2 SV=2 Back     alignment and function description
>sp|Q8VCH6|DHC24_MOUSE Delta(24)-sterol reductase OS=Mus musculus GN=Dhcr24 PE=2 SV=1 Back     alignment and function description
>sp|O17397|DIML_CAEEL Diminuto-like protein OS=Caenorhabditis elegans GN=F52H2.6 PE=3 SV=1 Back     alignment and function description
>sp|P72056|DPRE1_MYCTU Probable decaprenylphosphoryl-beta-D-ribose oxidase OS=Mycobacterium tuberculosis GN=dprE1 PE=1 SV=1 Back     alignment and function description
>sp|P58710|GGLO_MOUSE L-gulonolactone oxidase OS=Mus musculus GN=Gulo PE=1 SV=3 Back     alignment and function description
>sp|P94535|GLCD_BACSU Glycolate oxidase subunit GlcD OS=Bacillus subtilis (strain 168) GN=glcD PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query565
255559165567 Cell elongation protein diminuto, putati 1.0 0.996 0.894 0.0
255549501567 Cell elongation protein diminuto, putati 1.0 0.996 0.890 0.0
224098551563 predicted protein [Populus trichocarpa] 0.989 0.992 0.893 0.0
356544574567 PREDICTED: delta(24)-sterol reductase-li 1.0 0.996 0.867 0.0
224109026563 predicted protein [Populus trichocarpa] 0.989 0.992 0.880 0.0
356538595567 PREDICTED: delta(24)-sterol reductase-li 1.0 0.996 0.860 0.0
21326148563 ovule/fiber cell elongation protein Ghfe 0.992 0.996 0.857 0.0
13194621567 brassinosteroid biosynthetic protein LKB 1.0 0.996 0.841 0.0
147861641563 hypothetical protein VITISV_016141 [Viti 0.992 0.996 0.859 0.0
359473657563 PREDICTED: delta(24)-sterol reductase-li 0.992 0.996 0.859 0.0
>gi|255559165|ref|XP_002520604.1| Cell elongation protein diminuto, putative [Ricinus communis] gi|223540203|gb|EEF41777.1| Cell elongation protein diminuto, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1061 bits (2745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/567 (89%), Positives = 532/567 (93%), Gaps = 2/567 (0%)

Query: 1   MSDLEAPLRPKRKKGIADFLVQFRWILVVFVVLPISVTIYFLIYLGDVKSDMKSYKKRQK 60
           MSDLEAPLRPKRKK + D+ VQFRWILV+FVVLPIS TIYFL YLGDVKS MKSYK+RQK
Sbjct: 1   MSDLEAPLRPKRKKVLVDYFVQFRWILVIFVVLPISFTIYFLTYLGDVKSSMKSYKQRQK 60

Query: 61  EHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILDI 120
           EHDENVKKVVKRLK+RNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFR+ILDI
Sbjct: 61  EHDENVKKVVKRLKQRNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRHILDI 120

Query: 121 DKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDLTVGGLINGYGIEGSSHIYGLFS 180
           DKDRMIAKVEPLVNMGQI+RAT PMNL+LAVVAELDDLTVGGLINGYGIEGSSHIYGLFS
Sbjct: 121 DKDRMIAKVEPLVNMGQITRATVPMNLALAVVAELDDLTVGGLINGYGIEGSSHIYGLFS 180

Query: 181 DTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQGTLGLLVSAEIKLIPIKEYMKLTYK 240
           DTVVAYEIVLADG+VVRATKDNEY DLFY IPWSQGTLGLLVSAEIKLIPIKEYMKLTYK
Sbjct: 181 DTVVAYEIVLADGRVVRATKDNEYSDLFYGIPWSQGTLGLLVSAEIKLIPIKEYMKLTYK 240

Query: 241 PVASNLREIAQAYADSFAPRDGDQDNQAKVPDFVEGMIYTSTEAVFMTGRYASKEEAKKK 300
           P   NL+++AQAY DSFAP+D DQDN  KVPDFVEGMIY+STE V MTGRYASKEEAKKK
Sbjct: 241 PAVGNLKDLAQAYVDSFAPKDLDQDNPDKVPDFVEGMIYSSTEGVMMTGRYASKEEAKKK 300

Query: 301 GNVINSVGWWFKPWFYQHAATALKRGEFTEYIPTREYYHRHTRSLYWEGKLILPFGDQFW 360
           GNVINSVGWWFKPWFYQHA TALK+GEF EYIPTREYYHRHTR LYWEGKLILPFGDQ+W
Sbjct: 301 GNVINSVGWWFKPWFYQHAQTALKKGEFVEYIPTREYYHRHTRCLYWEGKLILPFGDQWW 360

Query: 361 FRFLFGWMMPPKVSLLKATQGEAIRNYYHQNHVIQDMLVPLYKVGDALEWQHR--EVYPL 418
           FRFLFGW+MPPKVSLLKATQGEAIRNYYH+NHVIQDMLVPLYKVGDAL W HR  EVYP+
Sbjct: 361 FRFLFGWLMPPKVSLLKATQGEAIRNYYHENHVIQDMLVPLYKVGDALLWVHREMEVYPI 420

Query: 419 WLCPHRLYKLPYKTMVYPEPGFEHHRRQGDTSYAQMYTDVGVYYAPGPILRGEVFDGAEA 478
           WLCPHRL+KLP KTMVYPEPGFEH RRQGD+ YAQMYTD+GVYYAPGPILRGEVFDGAEA
Sbjct: 421 WLCPHRLFKLPMKTMVYPEPGFEHQRRQGDSPYAQMYTDIGVYYAPGPILRGEVFDGAEA 480

Query: 479 VRKMEQWLIENGGFQPQYAVSELSEKNFWRMFDADLYEKCRKKYKAVGTFMSVYYKSKKG 538
           VR ME WLIEN GFQPQYAVSEL+EKNFWRMFDA LYE+CR+KY AVGTFMSVYYKSKKG
Sbjct: 481 VRSMESWLIENHGFQPQYAVSELNEKNFWRMFDAGLYEQCRRKYGAVGTFMSVYYKSKKG 540

Query: 539 RKTEKEVQEAEQAQLEPAYAEVDQPID 565
           RKTEKEVQEAEQA LEPAYAEVDQP D
Sbjct: 541 RKTEKEVQEAEQAHLEPAYAEVDQPAD 567

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255549501|ref|XP_002515803.1| Cell elongation protein diminuto, putative [Ricinus communis] gi|223545072|gb|EEF46584.1| Cell elongation protein diminuto, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224098551|ref|XP_002311215.1| predicted protein [Populus trichocarpa] gi|224098858|ref|XP_002311294.1| predicted protein [Populus trichocarpa] gi|222851035|gb|EEE88582.1| predicted protein [Populus trichocarpa] gi|222851114|gb|EEE88661.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356544574|ref|XP_003540724.1| PREDICTED: delta(24)-sterol reductase-like [Glycine max] Back     alignment and taxonomy information
>gi|224109026|ref|XP_002315056.1| predicted protein [Populus trichocarpa] gi|222864096|gb|EEF01227.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356538595|ref|XP_003537788.1| PREDICTED: delta(24)-sterol reductase-like [Glycine max] Back     alignment and taxonomy information
>gi|21326148|gb|AAM47602.1|AF513859_1 ovule/fiber cell elongation protein Ghfe1 [Gossypium hirsutum] gi|226358404|gb|ACO51065.1| fiber cell elongation protein [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|13194621|gb|AAK15493.1|AF325121_1 brassinosteroid biosynthetic protein LKB [Pisum sativum] Back     alignment and taxonomy information
>gi|147861641|emb|CAN79299.1| hypothetical protein VITISV_016141 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359473657|ref|XP_002271846.2| PREDICTED: delta(24)-sterol reductase-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query565
TAIR|locus:2092276561 DWF1 "DWARF 1" [Arabidopsis th 0.987 0.994 0.792 8.7e-253
UNIPROTKB|Q5ZIF2516 DHCR24 "Uncharacterized protei 0.787 0.862 0.430 1.3e-98
ZFIN|ZDB-GENE-041212-73516 dhcr24 "24-dehydrocholesterol 0.787 0.862 0.427 4.5e-98
UNIPROTKB|I3LM80516 DHCR24 "Uncharacterized protei 0.791 0.866 0.426 4.1e-97
UNIPROTKB|A6QR14516 DHCR24 "Uncharacterized protei 0.787 0.862 0.430 6.6e-97
UNIPROTKB|F1PXA2516 DHCR24 "Uncharacterized protei 0.787 0.862 0.428 1.1e-96
MGI|MGI:1922004516 Dhcr24 "24-dehydrocholesterol 0.787 0.862 0.428 3.7e-96
UNIPROTKB|Q15392516 DHCR24 "Delta(24)-sterol reduc 0.787 0.862 0.430 5.9e-96
RGD|1306529516 Dhcr24 "24-dehydrocholesterol 0.787 0.862 0.428 5.9e-96
UNIPROTKB|Q60HC5516 DHCR24 "Delta(24)-sterol reduc 0.787 0.862 0.430 7.6e-96
TAIR|locus:2092276 DWF1 "DWARF 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2434 (861.9 bits), Expect = 8.7e-253, P = 8.7e-253
 Identities = 447/564 (79%), Positives = 502/564 (89%)

Query:     1 MSDLEAPL-RPKRKKGIADFLVQFRWILVVFVVLPISVTIYFLIYLGDVKSDMKSYKKRQ 59
             MSDL+ PL RPKRKK   D+ V+FRWI+V+F+VLP S T YFLIYLGD+ S+ KS++KRQ
Sbjct:     1 MSDLQTPLVRPKRKKTWVDYFVKFRWIIVIFIVLPFSATFYFLIYLGDMWSESKSFEKRQ 60

Query:    60 KEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILD 119
             KEHDENVKKV+KRLK R+ SKDGLVCTARKPWIAVGMRNVDYKRARHFEVDL  FRNIL+
Sbjct:    61 KEHDENVKKVIKRLKGRDASKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLGEFRNILE 120

Query:   120 IDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDLTVGGLINGYGIEGSSHIYGLF 179
             I+K++M A+VEPLVNMGQISRAT PMNLSLAVVAELDDLTVGGLINGYGIEGSSHIYGLF
Sbjct:   121 INKEKMTARVEPLVNMGQISRATVPMNLSLAVVAELDDLTVGGLINGYGIEGSSHIYGLF 180

Query:   180 SDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQGTLGLLVSAEIKLIPIKEYMKLTY 239
             +DTV AYEIVLA G++VRAT+DNEY DL+YAIPWSQGTLGLLV+AEI+LI +KEYM+LTY
Sbjct:   181 ADTVEAYEIVLAGGELVRATRDNEYSDLYYAIPWSQGTLGLLVAAEIRLIKVKEYMRLTY 240

Query:   240 KPVASNLREIAQAYADSFAPRDGDQDNQAKVPDFVEGMIYTSTEAVFMTGRYASKEEAKK 299
              PV  +L+ +AQ Y DSFAP+DGD+   +K+PDFVEGM+Y  TE V M G YASKEEAKK
Sbjct:   241 IPVKGDLQALAQGYIDSFAPKDGDK---SKIPDFVEGMVYNPTEGVMMVGTYASKEEAKK 297

Query:   300 KGNVINSVGWWFKPWFYQHAATALKRGEFTEYIPTREYYHRHTRSLYWEGKLILPFGDQF 359
             KGN IN+VGWWFKPWFYQHA TALK+G+F EYIPTREYYHRHTR LYWEGKLILPFGDQF
Sbjct:   298 KGNKINNVGWWFKPWFYQHAQTALKKGQFVEYIPTREYYHRHTRCLYWEGKLILPFGDQF 357

Query:   360 WFRFLFGWMMPPKVSLLKATQGEAIRNYYHQNHVIQDMLVPLYKVGDALEWQHRE--VYP 417
             WFR+L GW+MPPKVSLLKATQGEAIRNYYH  HVIQDMLVPLYKVGDALEW HRE  VYP
Sbjct:   358 WFRYLLGWLMPPKVSLLKATQGEAIRNYYHDMHVIQDMLVPLYKVGDALEWVHREMEVYP 417

Query:   418 LWLCPHRLYKLPYKTMVYPEPGFEHHRRQGDTSYAQMYTDVGVYYAPGPILRGEVFDGAE 477
             +WLCPH+L+K P K  +YPEPGFE+  RQGDT  AQMYTDVGVYYAPG +LRGE FDG+E
Sbjct:   418 IWLCPHKLFKQPIKGQIYPEPGFEYENRQGDTEDAQMYTDVGVYYAPGCVLRGEEFDGSE 477

Query:   478 AVRKMEQWLIENGGFQPQYAVSELSEKNFWRMFDADLYEKCRKKYKAVGTFMSVYYKSKK 537
             AVR+ME+WLIEN GFQPQYAVSEL EK+FWRMF+ +LYE+CRKKY+A+GTFMSVYYKSKK
Sbjct:   478 AVRRMEKWLIENHGFQPQYAVSELDEKSFWRMFNGELYEECRKKYRAIGTFMSVYYKSKK 537

Query:   538 GRKTEKEVQEAEQAQLEPAYAEVD 561
             GRKTEKEV+EAEQA LE AYAE D
Sbjct:   538 GRKTEKEVREAEQAHLETAYAEAD 561
GO:0003824 "catalytic activity" evidence=IEA;IMP
GO:0005634 "nucleus" evidence=ISM
GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0005773 "vacuole" evidence=IDA
GO:0005516 "calmodulin binding" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0009808 "lignin metabolic process" evidence=IMP
GO:0009834 "secondary cell wall biogenesis" evidence=IMP
GO:0000271 "polysaccharide biosynthetic process" evidence=RCA
GO:0000272 "polysaccharide catabolic process" evidence=RCA
GO:0005982 "starch metabolic process" evidence=RCA
GO:0006084 "acetyl-CoA metabolic process" evidence=RCA
GO:0009653 "anatomical structure morphogenesis" evidence=RCA
GO:0009664 "plant-type cell wall organization" evidence=RCA
GO:0009825 "multidimensional cell growth" evidence=RCA
GO:0009832 "plant-type cell wall biogenesis" evidence=RCA
GO:0009932 "cell tip growth" evidence=RCA
GO:0010075 "regulation of meristem growth" evidence=RCA
GO:0010817 "regulation of hormone levels" evidence=RCA
GO:0016126 "sterol biosynthetic process" evidence=RCA
GO:0016132 "brassinosteroid biosynthetic process" evidence=IMP;RCA
GO:0019344 "cysteine biosynthetic process" evidence=RCA
GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA
GO:0048364 "root development" evidence=RCA
GO:0048653 "anther development" evidence=RCA
GO:0048767 "root hair elongation" evidence=RCA
GO:0048869 "cellular developmental process" evidence=RCA
GO:0071555 "cell wall organization" evidence=RCA
GO:0009416 "response to light stimulus" evidence=IMP
GO:0009826 "unidimensional cell growth" evidence=IMP
GO:0006694 "steroid biosynthetic process" evidence=IMP
GO:0016021 "integral to membrane" evidence=IDA
UNIPROTKB|Q5ZIF2 DHCR24 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041212-73 dhcr24 "24-dehydrocholesterol reductase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|I3LM80 DHCR24 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|A6QR14 DHCR24 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PXA2 DHCR24 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:1922004 Dhcr24 "24-dehydrocholesterol reductase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q15392 DHCR24 "Delta(24)-sterol reductase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1306529 Dhcr24 "24-dehydrocholesterol reductase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q60HC5 DHCR24 "Delta(24)-sterol reductase" [Macaca fascicularis (taxid:9541)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5BQE6DHC24_RAT1, ., 3, ., 1, ., 7, 20.41010.87070.9534yesno
P93472DIM_PEA1, ., 3, ., 1, ., 7, 20.83591.00.9964N/Ano
Q8VCH6DHC24_MOUSE1, ., 3, ., 1, ., 7, 20.41010.87070.9534yesno
Q39085DIM_ARATH1, ., 3, ., 1, ., 7, 20.79250.98760.9946yesno
O17397DIML_CAEELNo assigned EC number0.34730.88670.9542yesno
Q15392DHC24_HUMAN1, ., 3, ., 1, ., 7, 20.41010.87070.9534yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_VIII000736
hypothetical protein (563 aa)
(Populus trichocarpa)
Predicted Functional Partners:
CYP51G5
cytochrome P450 probable obtusifoliol 14-alpha-demethylase (489 aa)
  •  •  0.914
estExt_fgenesh4_pm.C_LG_X0950
SubName- Full=Putative uncharacterized protein; (434 aa)
     •• 0.904
fgenesh4_pg.C_LG_VIII000037
hypothetical protein (437 aa)
     •• 0.904
estExt_fgenesh4_pg.C_280278
hypothetical protein (367 aa)
     •• 0.903
eugene3.00031298
hypothetical protein (221 aa)
     •  0.902
gw1.XVI.1394.1
hypothetical protein (823 aa)
     •  0.899
gw1.IX.3368.1
hypothetical protein (335 aa)
     •  0.899
gw1.1425.5.1
annotation not avaliable (207 aa)
     •  0.899
grail3.0123009201
hypothetical protein (278 aa)
     •  0.899
fgenesh4_pm.C_LG_IV000367
hypothetical protein (510 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query565
pfam01565139 pfam01565, FAD_binding_4, FAD binding domain 3e-18
COG0277459 COG0277, GlcD, FAD/FMN-containing dehydrogenases [ 4e-17
TIGR01678438 TIGR01678, FAD_lactone_ox, sugar 1,4-lactone oxida 6e-11
TIGR00387413 TIGR00387, glcD, glycolate oxidase, subunit GlcD 9e-11
PRK11230499 PRK11230, PRK11230, glycolate oxidase subunit GlcD 0.002
PLN02805555 PLN02805, PLN02805, D-lactate dehydrogenase [cytoc 0.004
>gnl|CDD|216574 pfam01565, FAD_binding_4, FAD binding domain Back     alignment and domain information 
 Score = 80.7 bits (200), Expect = 3e-18
 Identities = 37/92 (40%), Positives = 48/92 (52%), Gaps = 1/92 (1%)

Query: 109 VDLSAFRNILDIDKDRMIAKVEPLVNMGQISRATCPMNLSLAVV-AELDDLTVGGLINGY 167
           +DLS    IL+ID +   A VE  V +G + RA     L L +        TVGG I   
Sbjct: 48  LDLSRLNGILEIDPEDGTATVEAGVTLGDLVRALAAKGLLLGLEPGSGIPGTVGGAIATN 107

Query: 168 GIEGSSHIYGLFSDTVVAYEIVLADGQVVRAT 199
           G    S  YGL  D V++ E+VLADG+VVR +
Sbjct: 108 GGGYGSERYGLTRDNVLSLEVVLADGEVVRLS 139

This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. Length = 139
>gnl|CDD|223354 COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|233525 TIGR01678, FAD_lactone_ox, sugar 1,4-lactone oxidases Back     alignment and domain information
>gnl|CDD|129482 TIGR00387, glcD, glycolate oxidase, subunit GlcD Back     alignment and domain information
>gnl|CDD|183043 PRK11230, PRK11230, glycolate oxidase subunit GlcD; Provisional Back     alignment and domain information
>gnl|CDD|178402 PLN02805, PLN02805, D-lactate dehydrogenase [cytochrome] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 565
KOG1262543 consensus FAD-binding protein DIMINUTO [General fu 100.0
TIGR01678438 FAD_lactone_ox sugar 1,4-lactone oxidases. This mo 100.0
TIGR01679419 bact_FAD_ox FAD-linked oxidoreductase. This model 100.0
TIGR01676541 GLDHase galactonolactone dehydrogenase. This model 100.0
PLN02465573 L-galactono-1,4-lactone dehydrogenase 100.0
TIGR01677557 pln_FAD_oxido plant-specific FAD-dependent oxidore 100.0
PLN02441525 cytokinin dehydrogenase 100.0
PLN02805555 D-lactate dehydrogenase [cytochrome] 100.0
PRK11230499 glycolate oxidase subunit GlcD; Provisional 100.0
COG0277459 GlcD FAD/FMN-containing dehydrogenases [Energy pro 99.97
TIGR00387413 glcD glycolate oxidase, subunit GlcD. This protein 99.97
KOG4730518 consensus D-arabinono-1, 4-lactone oxidase [Defens 99.95
PRK11282352 glcE glycolate oxidase FAD binding subunit; Provis 99.94
KOG1231505 consensus Proteins containing the FAD binding doma 99.9
KOG1232511 consensus Proteins containing the FAD binding doma 99.83
PRK11183564 D-lactate dehydrogenase; Provisional 99.83
PF01565139 FAD_binding_4: FAD binding domain This is only a s 99.82
PRK13905298 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.75
KOG1233613 consensus Alkyl-dihydroxyacetonephosphate synthase 99.7
PRK12436305 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.64
PRK14652302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.63
PRK13906307 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.62
PRK13903363 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.6
TIGR00179284 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.59
PRK14649295 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.5
PRK14653297 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.46
PRK14650302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.39
COG0812291 MurB UDP-N-acetylmuramate dehydrogenase [Cell enve 99.37
PRK00046334 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.37
PRK14648354 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.28
PF04030259 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: I 99.17
PRK14651273 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.08
PLN00107257 FAD-dependent oxidoreductase; Provisional 98.77
PRK13904257 murB UDP-N-acetylenolpyruvoylglucosamine reductase 98.73
PF09265281 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and c 96.3
PRK09799258 putative oxidoreductase; Provisional 92.28
PF00941171 FAD_binding_5: FAD binding domain in molybdopterin 90.84
TIGR03312257 Se_sel_red_FAD probable selenate reductase, FAD-bi 88.25
TIGR02963467 xanthine_xdhA xanthine dehydrogenase, small subuni 88.12
PF02913248 FAD-oxidase_C: FAD linked oxidases, C-terminal dom 86.52
PRK09971291 xanthine dehydrogenase subunit XdhB; Provisional 85.21
TIGR03195321 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta s 84.58
TIGR03199264 pucC xanthine dehydrogenase C subunit. This gene h 83.61
PLN02906 1319 xanthine dehydrogenase 82.66
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=5.7e-112  Score=853.27  Aligned_cols=532  Identities=48%  Similarity=0.868  Sum_probs=481.7

Q ss_pred             CcccchhhHHHHhhccceEEEEEecCCCcccccceeeccccccccccccCCCCCHHHHHHHHHHHHhcCC-CCCceeeec
Q 008429            9 RPKRKKGIADFLVQFRWILVVFVVLPISVTIYFLIYLGDVKSDMKSYKKRQKEHDENVKKVVKRLKERNP-SKDGLVCTA   87 (565)
Q Consensus         9 ~~~~~~~~~~~l~~~r~i~~~~~~lp~s~~~~~~~~~~~~~~~~~~~~pa~~~~~~~V~~i~~~~~~~~~-~~~~~~~~~   87 (565)
                      ++++...-..+++++||+|||+|+||.|++||.++++|+|| + ...++++..|.+.|+.|+++++++.. .++.++|++
T Consensus         8 ~~~k~~~Wv~~~~~fRwv~Vv~f~LP~S~lF~~~i~~r~~~-~-~~~ssa~~~H~qrVkkIqkqlkew~d~s~k~~lcta   85 (543)
T KOG1262|consen    8 VKAKAIRWVEYFVHFRWVFVVLFLLPLSFLFDLFIYFRIWL-V-RKLSSAPREHQQRVKKIQKQLKEWLDDSEKKPLCTA   85 (543)
T ss_pred             hhhhhhhHHHHHhhcceEEEehhhhhHHHHHHHHHHHHHHH-H-HHhccCchHHHHHHHHHHHHHHhhccccccCccccc
Confidence            44444444568999999999999999999999999999955 3 33566666799999999999999875 677899999


Q ss_pred             CCCceeecccccccccCCeEEEEcCCCCCceEEeCCCcEEEEcCCCCHHHHHHHHccCCceeeeecCCCccchhchhccc
Q 008429           88 RKPWIAVGMRNVDYKRARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDLTVGGLINGY  167 (565)
Q Consensus        88 ~~~~~~~G~~~~~~~~~~givIdls~l~~il~vd~~~~~v~Ve~Gv~~~~L~~~l~~~Gl~~pv~p~~~~~tvGG~i~gg  167 (565)
                      +++|+++|.+..++... .--|++..|.+||++|.++.+|+|||+|+++++.++|.+.|+++|+.|++++.||||.|+|.
T Consensus        86 Rp~Wltvs~r~~dykk~-h~~v~id~l~dILeld~ekmtvrvEP~Vtmgqis~~lip~g~tLaV~~EldDlTvGGLinG~  164 (543)
T KOG1262|consen   86 RPGWLTVSTRFFDYKKC-HHQVPIDELHDILELDEEKMTVRVEPLVTMGQISKFLIPKGYTLAVLPELDDLTVGGLINGV  164 (543)
T ss_pred             CCCeEEEEEecchhhhh-cccCCHHHHhHHHhcchhcceEEecCCccHHHHHHHhccCCceeeeecccccceecceeeec
Confidence            99999999999888754 33445556778999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcccccccceeeEEEEEecCceEEEEcCCCCchhhhhhcccccCCCceEEEEEEEEEeccceeEEEEecCCCCHH
Q 008429          168 GIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQGTLGLLVSAEIKLIPIKEYMKLTYKPVASNLR  247 (565)
Q Consensus       168 g~g~~s~~~G~~~d~V~~~evVladG~vv~~s~~~~~~dLf~a~~Gs~G~lGIVt~~tl~l~p~~~~~~~~~~~~~~~~~  247 (565)
                      |+.++|++||++.+.+.+.|||++||+++++.++++++|||+|+.+|.||||+.+.++||++|.++++.++|.++.+ ++
T Consensus       165 Gies~ShkyGlfq~~~~aYEvVladGelv~~t~dne~sdLfyaiPWSqGTlgfLVaatiriIkvK~Yvkltyip~~~-l~  243 (543)
T KOG1262|consen  165 GIESSSHKYGLFQHICTAYEVVLADGELVRVTPDNEHSDLFYAIPWSQGTLGFLVAATIRIIKVKKYVKLTYIPVHG-LD  243 (543)
T ss_pred             ccccccchhhhHHhhhheeEEEecCCeEEEecCCcccCceEEEcccccCchheeeeeEEEEEeccceEEEEEEeccc-HH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998755 99


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCccceEEEEEecCCcEEEEEeecCChHHHhhhccccccccccccchhhHhHHHhhhcCc
Q 008429          248 EIAQAYADSFAPRDGDQDNQAKVPDFVEGMIYTSTEAVFMTGRYASKEEAKKKGNVINSVGWWFKPWFYQHAATALKRGE  327 (565)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~vl~~g~~~~~~~~~~~~~~~~~~~~~~~p~fy~~~~~~~~~~~  327 (565)
                      +.++.+.+...  ..|  .....++|+|+++|++.++|+|+|.++|.++..+ .+++|.+++|++||||+|++..++.+.
T Consensus       244 e~c~k~~e~~~--dsd--kntk~~dfvE~liyn~~egviMvG~fad~~dak~-~~kvN~vgwwyKpWFykHvet~lkkge  318 (543)
T KOG1262|consen  244 EYCKKITELSG--DSD--KNTKNADFVEGLIYNKNEGVIMVGNFADKVDAKS-NAKVNDVGWWYKPWFYKHVETFLKKGE  318 (543)
T ss_pred             HHHHHHHhhcc--ccc--ccccccchhheeeecCCccEEEEEeccCcccccc-ccccccchhhhhhHHHHHHHHHHhcCC
Confidence            99999988742  222  2223479999999999999999999998666543 368999999999999999999999899


Q ss_pred             ccccccccccccccccceeecccccccCCchhhhhhhhcccCChhhhhHHhhhchhhhhccCCcceeeEEeeccccHHHH
Q 008429          328 FTEYIPTREYYHRHTRSLYWEGKLILPFGDQFWFRFLFGWMMPPKVSLLKATQGEAIRNYYHQNHVIQDMLVPLYKVGDA  407 (565)
Q Consensus       328 ~~e~~p~~dy~~r~~r~~fw~~~~~~p~~~~~~~r~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~viqDv~vP~~~l~e~  407 (565)
                      ..||||+++||+||.|++||..+.++|||+|++||+|++|++|+|+++++++++.++++++.+.+|+|||.||+++|.|+
T Consensus       319 ~~EYIPlr~YyhRHtrsifWe~~~iiPFGn~~~FRyllgWl~PPKia~LKaTt~ealRkly~~~hV~QDmlvPl~kl~ea  398 (543)
T KOG1262|consen  319 GEEYIPLRSYYHRHTRSIFWELEDIIPFGNNPVFRYLLGWLCPPKIAFLKATTGEALRKLYFAKHVFQDMLVPLDKLKEA  398 (543)
T ss_pred             CceeeeHHHHHHhccceeEEeeeeeeecCCcHHHHHHHHhcCCChHHHhhcccHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhc--CCCceeeceeeeecCCCccccCCCCCccCCCCCCCCCCcceeEEEEeecCCCCCCCCCCCchHHHHHHHHHH
Q 008429          408 LEWQHR--EVYPLWLCPHRLYKLPYKTMVYPEPGFEHHRRQGDTSYAQMYTDVGVYYAPGPILRGEVFDGAEAVRKMEQW  485 (565)
Q Consensus       408 l~~l~~--~~~P~wlcP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~r~lE~~  485 (565)
                      |+++++  ++||+||||++++++|..|+++|.|---+  .+|.  ..+||+|+|+||+||-..|++.|++-+++|+||++
T Consensus       399 ld~~hke~evYPiwlcP~~l~~qp~~Gq~~~~p~~r~--~~~~--~~~my~DvGvYg~pg~v~r~e~y~~~~a~RrmEkf  474 (543)
T KOG1262|consen  399 LDTFHKEFEVYPIWLCPFRLYSQPGQGQLRPPPKSRL--VPGT--NASMYNDVGVYGTPGQVERREPYNPTHAMRRMEKF  474 (543)
T ss_pred             HHHHHhhheeeeeeeeeeeccCCCCCceecCCccccC--CCCC--cceeEEecccccCCccccccCCCCHHHHHHHHHHH
Confidence            999999  99999999999999887778877662221  2343  35999999999999999998999999999999999


Q ss_pred             HHHcCCcccccccccCCHHHHHhhcChhHHHHHHHhcCCCCCChhhhhhhhc-CccchHHHHHHHHHhc
Q 008429          486 LIENGGFQPQYAVSELSEKNFWRMFDADLYEKCRKKYKAVGTFMSVYYKSKK-GRKTEKEVQEAEQAQL  553 (565)
Q Consensus       486 v~~~gG~k~lya~~~~~~~eF~~~y~~~~y~~lR~ky~~~~~~~~~y~k~~~-~~~~~~~~~~~~~~~~  553 (565)
                      |++++|+|+||||+||+|+|||+|||+++|+.+|.||+|.|+||++|||++. +|..+.+..+|+|+.+
T Consensus       475 vr~v~Gfq~~YAd~~m~eeef~eMFd~tLY~~~R~ky~cigaFp~vYdKikk~gr~~~~~~~~a~~~~~  543 (543)
T KOG1262|consen  475 VRSVHGFQMLYADIYMSEEEFWEMFDGTLYNQVRLKYHCIGAFPRVYDKIKKEGRVISIGETYAVKKEE  543 (543)
T ss_pred             HHHccCcceeehhhhcCHHHHHHHhhhHHHHHHHHHcCccccchHHHHhhchhccccchhhhhhhhccC
Confidence            9999999999999999999999999999999999999999999999999555 9999999999999853

>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases Back     alignment and domain information
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase Back     alignment and domain information
>TIGR01676 GLDHase galactonolactone dehydrogenase Back     alignment and domain information
>PLN02465 L-galactono-1,4-lactone dehydrogenase Back     alignment and domain information
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase Back     alignment and domain information
>PLN02441 cytokinin dehydrogenase Back     alignment and domain information
>PLN02805 D-lactate dehydrogenase [cytochrome] Back     alignment and domain information
>PRK11230 glycolate oxidase subunit GlcD; Provisional Back     alignment and domain information
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>TIGR00387 glcD glycolate oxidase, subunit GlcD Back     alignment and domain information
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms] Back     alignment and domain information
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional Back     alignment and domain information
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>PRK11183 D-lactate dehydrogenase; Provisional Back     alignment and domain information
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only] Back     alignment and domain information
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase Back     alignment and domain information
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1 Back     alignment and domain information
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PLN00107 FAD-dependent oxidoreductase; Provisional Back     alignment and domain information
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold Back     alignment and domain information
>PRK09799 putative oxidoreductase; Provisional Back     alignment and domain information
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain Back     alignment and domain information
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit Back     alignment and domain information
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit Back     alignment and domain information
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional Back     alignment and domain information
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit Back     alignment and domain information
>TIGR03199 pucC xanthine dehydrogenase C subunit Back     alignment and domain information
>PLN02906 xanthine dehydrogenase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query565
4fdn_A481 Mycobacterium Tuberculosis Dpre1 In Complex With Ct 6e-11
4g3t_A403 Mycobacterium Smegmatis Dpre1 - Hexagonal Crystal F 3e-10
4aut_A468 Crystal Structure Of The Tuberculosis Drug Target D 4e-10
4bc7_A658 Mammalian Alkyldihydroxyacetonephosphate Synthase: 2e-06
4bby_A658 Mammalian Alkyldihydroxyacetonephosphate Synthase: 2e-06
4bca_A658 Mammalian Alkyldihydroxyacetonephosphate Synthase: 2e-06
3rj8_A473 Crystal Structure Of Carbohydrate Oxidase From Micr 6e-06
3pm9_A476 Crystal Structure Of A Putative Dehydrogenase (Rpa1 8e-05
2exr_A524 X-Ray Structure Of Cytokinin OxidaseDEHYDROGENASE ( 3e-04
2vfr_A422 Alditol Oxidase From Streptomyces Coelicolor A3(2): 4e-04
>pdb|4FDN|A Chain A, Mycobacterium Tuberculosis Dpre1 In Complex With Ct325 - Hexagonal Crystal Form Length = 481 Back     alignment and structure 
Iteration: 1

 Score = 65.9 bits (159), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 73/153 (47%), Gaps = 2/153 (1%)
Query: 109 VDLSAFRNILDIDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDLTVGGLINGYG 168
           +D++    I  ID D  +  ++  VN+ Q+ +A  P  L + V+     +TVGG I    
Sbjct: 92  IDMTPLNTIHSIDADTKLVDIDAGVNLDQLMKAALPFGLWVPVLPGTRQVTVGGAI-ACD 150
Query: 169 IEGSSH-IYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQGTLGLLVSAEIK 227
           I G +H   G F + V + +++ ADG++   T   E  +LF+A     G  G+++ A I+
Sbjct: 151 IHGKNHHSAGSFGNHVRSMDLLTADGEIRHLTPTGEDAELFWATVGGNGLTGIIMRATIE 210
Query: 228 LIPIKEYMKLTYKPVASNLREIAQAYADSFAPR 260
           + P      +    V ++L E    ++D    R
Sbjct: 211 MTPTSTAYFIADGDVTASLDETIALHSDGSEAR 243
>pdb|4G3T|A Chain A, Mycobacterium Smegmatis Dpre1 - Hexagonal Crystal Form Length = 403 Back     alignment and structure
>pdb|4AUT|A Chain A, Crystal Structure Of The Tuberculosis Drug Target Decaprenyl-Phosphoryl-Beta-D-Ribofuranose-2- Oxidoreductase (Dpre1) From Mycobacterium Smegmatis Length = 468 Back     alignment and structure
>pdb|4BC7|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Arg419his Mutant Length = 658 Back     alignment and structure
>pdb|4BBY|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-Type Length = 658 Back     alignment and structure
>pdb|4BCA|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Tyr578phe Mutant Length = 658 Back     alignment and structure
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From Microdochium Nivale Length = 473 Back     alignment and structure
>pdb|3PM9|A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution Length = 476 Back     alignment and structure
>pdb|2EXR|A Chain A, X-Ray Structure Of Cytokinin OxidaseDEHYDROGENASE (CKX) FROM Arabidopsis Thaliana At5g21482 Length = 524 Back     alignment and structure
>pdb|2VFR|A Chain A, Alditol Oxidase From Streptomyces Coelicolor A3(2): Native Enzyme Length = 422 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query565
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 3e-30
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 1e-23
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 3e-19
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 1e-18
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 2e-18
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 3e-15
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 1e-14
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 9e-14
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 2e-13
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 1e-11
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 2e-11
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 4e-11
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 2e-10
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 4e-10
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 4e-10
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 7e-10
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 5e-09
3pm9_A476 Putative oxidoreductase; putative D-2-hydroxygluta 2e-08
2yvs_A219 Glycolate oxidase subunit GLCE; oxidoreductase; 2. 3e-08
2uuu_A584 Alkyldihydroxyacetonephosphate synthase; transfera 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Length = 534 Back     alignment and structure
 Score =  124 bits (311), Expect = 3e-30
 Identities = 68/425 (16%), Positives = 135/425 (31%), Gaps = 47/425 (11%)

Query: 109 VDLSAFRNI-----LDIDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDLTVGGL 163
           V++++  +      +++  D              + RA+    ++     +   LTVGG 
Sbjct: 119 VNMASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSWTDYLYLTVGGT 178

Query: 164 INGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQGTLGLLVS 223
           ++  GI G +  +G     V+  +++   G++V  +K     DLF A+    G  G++  
Sbjct: 179 LSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNA-DLFDAVLGGLGQFGVITR 237

Query: 224 AEIKLIPIKEYMKLTYKPVASNLREIAQAYADSFAPRDGDQDNQAKVPDFVEGMIY---T 280
           A I + P     +   + V ++    +       APR G          +VEG ++   +
Sbjct: 238 ARIAVEPAPARAR-WVRFVYTDFAAFSADQERLTAPRPGGGGASFGPMSYVEGSVFVNQS 296

Query: 281 STEAVFMTGRYASKEEAKKKGNVINSVGWWFKPWFYQHAATALKRGEFTEYIPTREYYHR 340
               +  TG +   + A+    ++   G       Y   AT              +    
Sbjct: 297 LATDLANTGFFTDADVAR----IVALAGERNATTVYSIEATLNYDNATAAAAAVDQELAS 352

Query: 341 HTRSL-YWEGKLILPFGDQFWFRFLFGWMMPPKVSLLKATQGEAIRNYYHQNHVIQDMLV 399
              +L Y EG       D  +  FL       +   L           +   H   +M V
Sbjct: 353 VLGTLSYVEGFAFQ--RDVAYAAFLDRV--HGEEVALNKL------GLWRVPHPWLNMFV 402

Query: 400 PLYKVGDALEWQHREV-------YPLWLCPHRLYKLPYKTMVYPEPGFEHHRRQGDTSYA 452
           P  ++ D      + +        PL + P                         D  YA
Sbjct: 403 PRSRIADFDRGVFKGILQGTDIVGPLIVYPLNKSMWDDGMSAATP--------SEDVFYA 454

Query: 453 QMYTDVGVYYAPGPILRGEVFDGAEAVRKMEQWLIENGGFQPQYAVSELSEKNFWRMFDA 512
                  ++ +  P    ++    E  R++ ++    G     Y        ++ R F A
Sbjct: 455 V----SLLFSSVAP---NDLARLQEQNRRILRFCDLAGIQYKTYLARHTDRSDWVRHFGA 507

Query: 513 DLYEK 517
             + +
Sbjct: 508 AKWNR 512
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* Length = 481 Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Length = 422 Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Length = 524 Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Length = 459 Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Length = 540 Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Length = 473 Back     alignment and structure
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 3fw8_A* 3fw7_A* 3fwa_A* Length = 495 Back     alignment and structure
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Length = 518 Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Length = 520 Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Length = 503 Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Length = 561 Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Length = 560 Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Length = 501 Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Length = 521 Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Length = 523 Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Length = 530 Back     alignment and structure
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Length = 476 Back     alignment and structure
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus} Length = 219 Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Length = 584 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query565
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 100.0
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 100.0
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 100.0
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 100.0
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 100.0
3pm9_A476 Putative oxidoreductase; putative D-2-hydroxygluta 100.0
4bby_A658 Alkyldihydroxyacetonephosphate synthase, peroxiso; 100.0
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 100.0
3tsh_A500 Pollen allergen PHL P 4; flavoprotein, BI-covalent 99.97
2uuu_A584 Alkyldihydroxyacetonephosphate synthase; transfera 99.97
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 99.96
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 99.96
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 99.95
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 99.95
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 99.95
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 99.94
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 99.94
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 99.94
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 99.94
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 99.93
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 99.91
1f0x_A571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 99.9
2yvs_A219 Glycolate oxidase subunit GLCE; oxidoreductase; 2. 99.81
1hsk_A326 UDP-N-acetylenolpyruvoylglucosamine reductase; pep 99.78
3tx1_A322 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.78
3i99_A357 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.72
1uxy_A340 MURB, uridine diphospho-N-acetylenolpyruvylglucosa 99.71
2gqt_A268 UDP-N-acetylenolpyruvylglucosamine reductase; pept 99.61
1ffv_C287 CUTM, flavoprotein of carbon monoxide dehydrogenas 97.62
2w3s_A462 Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2 96.47
1n62_C288 Carbon monoxide dehydrogenase medium chain; CODH, 95.94
3nvz_B305 Xanthine dehydrogenase/oxidase; hydroxylase, homod 93.64
1t3q_C288 Quinoline 2-oxidoreductase medium subunit; QOR, mo 93.47
3hrd_C296 Nicotinate dehydrogenase FAD-subunit; selenium lig 82.86
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* 4aut_A* 4f4q_A* 4g3t_A 4g3u_A Back     alignment and structure
Probab=100.00  E-value=1e-39  Score=355.70  Aligned_cols=420  Identities=19%  Similarity=0.234  Sum_probs=274.8

Q ss_pred             eeccccccccccccC---CCCCHHHHHHHHHHHHhc--CCCCCceeeecCCCceeeccccccccc-CCeEEEEcCCCCCc
Q 008429           44 YLGDVKSDMKSYKKR---QKEHDENVKKVVKRLKER--NPSKDGLVCTARKPWIAVGMRNVDYKR-ARHFEVDLSAFRNI  117 (565)
Q Consensus        44 ~~~~~~~~~~~~~pa---~~~~~~~V~~i~~~~~~~--~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~givIdls~l~~i  117 (565)
                      ++.| |..+ ...|.   .|.+.++|+++++++++.  +.  .....|+++++       ++.+. ++|++|||++||+|
T Consensus        32 ~~~~-W~~~-~~~p~~vv~P~s~eev~~~v~~a~~~~~~~--~v~~~G~G~s~-------~~~~~~~~gvvIdl~~l~~i  100 (481)
T 4feh_A           32 RLTG-WGRT-APSVANVLRTPDAEMIVKAVARVAESGGGR--GAIARGLGRSY-------GDNAQNGGGLVIDMTPLNTI  100 (481)
T ss_dssp             EECC-TTCC-SCEEEEEEECSCHHHHHHHHHHHHTTTCTT--CEEEECSSCSS-------SSTTCCTTSEEEECTTCCCE
T ss_pred             eeec-ccCC-CCCCCEEEeCCCHHHHHHHHHHHHHcCCCc--eEEEEeCCcCC-------CCCCCCcCeEEEECccCCCc
Confidence            5677 5443 34444   799999999999999987  33  22333444443       12222 58999999999999


Q ss_pred             eEEeCCCcEEEEcCCCCHHHHHHHHccCCceeeeecCCCccchhchhcccCCCCCCcccccccceeeEEEEEecCceEEE
Q 008429          118 LDIDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVR  197 (565)
Q Consensus       118 l~vd~~~~~v~Ve~Gv~~~~L~~~l~~~Gl~~pv~p~~~~~tvGG~i~ggg~g~~s~~~G~~~d~V~~~evVladG~vv~  197 (565)
                      +++|+++++|+||||+++.+|+++|.++|+++|+.|+...+||||++++++.|..+++||.++|+|+++++|++||++++
T Consensus       101 ~~~d~~~~~v~v~aGv~l~~L~~~l~~~Gl~l~~~~g~~~~tvGGaia~~a~G~~~~~~G~~~d~V~~~evV~~dG~v~~  180 (481)
T 4feh_A          101 HSIDADTKLVDIDAGVNLDQLMKAALPFGLWVPVLPGTRQVTVGGAIACDIHGKNHHSAGSFGNHVRSMDLLTADGEIRH  180 (481)
T ss_dssp             EEEETTTTEEEEETTCBHHHHHHHHGGGTEECSCCCSCSCCBHHHHHHTTCCCTTHHHHCCGGGGEEEEEEECTTSCEEE
T ss_pred             eEEcCCCCEEEEcCCccHHHHHHHHHHcCCEEEEeCCcCccccCCccccccCCCCcccCCCccceEeEEEEEeCCCCEEE
Confidence            99999999999999999999999999999999988988999999999876666566899999999999999999999999


Q ss_pred             EcCCCCchhhhhhcccccCCCceEEEEEEEEEeccc-eeEEEEecCCCCHHHHHHHHHHHcCCCCCCCCCCCCccceEEE
Q 008429          198 ATKDNEYKDLFYAIPWSQGTLGLLVSAEIKLIPIKE-YMKLTYKPVASNLREIAQAYADSFAPRDGDQDNQAKVPDFVEG  276 (565)
Q Consensus       198 ~s~~~~~~dLf~a~~Gs~G~lGIVt~~tl~l~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~  276 (565)
                      ++++.+++||||+++||.|++||||+++|++.|.++ +...... .+.+++++++.+.+..           ......+.
T Consensus       181 ~s~~~~~~dLf~a~rgs~G~~GIIt~~tl~l~p~~~~~~~~~~~-~~~~l~~~~~~~~~~~-----------~~~~~~~~  248 (481)
T 4feh_A          181 LTPTGEDAELFWATVGGNGLTGIIMRATIEMTPTSTAYFIADGD-VTASLDETIALHSDGS-----------EARYTYSS  248 (481)
T ss_dssp             ECSSSTTHHHHHHHTTCTTTTCEEEEEEEECEECSCSEEEEEEE-ECSSHHHHHHHHSSSG-----------GGGCSEEE
T ss_pred             eCCCCCChHHHHHhhccCCCceEEEEEEEEEEeCCccEEEEEEE-eCCCHHHHHHHHHHHH-----------hcCCcEEE
Confidence            997547899999999999999999999999999876 3333333 3578998888875431           01244556


Q ss_pred             EEec-------CCcEEEEEeecCChHHHhhh--ccccccc---cccccchhhHhHHHhhhcCcccccccccccccccccc
Q 008429          277 MIYT-------STEAVFMTGRYASKEEAKKK--GNVINSV---GWWFKPWFYQHAATALKRGEFTEYIPTREYYHRHTRS  344 (565)
Q Consensus       277 ~~~~-------~~~~vl~~g~~~~~~~~~~~--~~~~~~~---~~~~~p~fy~~~~~~~~~~~~~e~~p~~dy~~r~~r~  344 (565)
                      .|+.       .++++++.+.+....+....  ..++...   ....+.++   ....+.... ..  .+...+++....
T Consensus       249 ~w~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~---p~~~l~~~~-~~--~~~~~~~~~~~~  322 (481)
T 4feh_A          249 AWFDAISAPPKLGRAAVSRGRLATVEQLPAKLRSEPLKFDAPQLLTLPDVF---PNGLANKYT-FG--PIGELWYRKSGT  322 (481)
T ss_dssp             EEECCSSCTTSTTCEEEEEEEECCGGGSCGGGGGSTTCCC-----------------------------------CCSCC
T ss_pred             EEEeccCCCCCCCeEEEEeCCcCcccccccccccCccccccccccCCCccC---cHHHHhHHH-HH--HHHHHHHhhCcc
Confidence            6663       26789999988654322100  0000000   00000000   000000000 00  000111100000


Q ss_pred             eeecccccccCCchhhhhhhhcccCChhhhhHHhhhchhhhhccCCcceee-EEeeccccHHHHHHHHhc----CCCcee
Q 008429          345 LYWEGKLILPFGDQFWFRFLFGWMMPPKVSLLKATQGEAIRNYYHQNHVIQ-DMLVPLYKVGDALEWQHR----EVYPLW  419 (565)
Q Consensus       345 ~fw~~~~~~p~~~~~~~r~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~viq-Dv~vP~~~l~e~l~~l~~----~~~P~w  419 (565)
                         ....+     +.+ +-++   .|...    .   ....+++.+.-.+| +++||.+ .+++|+.+.+    ...++.
T Consensus       323 ---~~~~~-----~~~-~~~~---~p~d~----v---~~~nr~yg~~~f~q~e~~vP~~-~~~al~~l~~~i~~~~~~~~  382 (481)
T 4feh_A          323 ---YRGKV-----QNL-TQFY---HPLDM----F---GEWNRAYGPAGFLQYQFVIPTE-AVDEFKKIIGVIQASGHYSF  382 (481)
T ss_dssp             ---EEEEE-----EEH-HHHH---C--------------CHHHHTTTSEEEEEEEEETT-CHHHHHHHHHHHHHTTCCCS
T ss_pred             ---ccccc-----ccc-eeee---chhhh----c---cccccccCCCCcEEEEEEeccc-HHHHHHHHHHHHHhcCCCce
Confidence               00000     000 0111   01100    0   00011111212456 8999999 9999999866    566665


Q ss_pred             eceeeeecCCCccccCCCCCccCCCCCCCCCCcceeEEEEeecCCCCCCCCCCCchHHHHHHHHHHHHHcCCcccccccc
Q 008429          420 LCPHRLYKLPYKTMVYPEPGFEHHRRQGDTSYAQMYTDVGVYYAPGPILRGEVFDGAEAVRKMEQWLIENGGFQPQYAVS  499 (565)
Q Consensus       420 lcP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~r~lE~~v~~~gG~k~lya~~  499 (565)
                      +--++....++..||+       .+.+|    .++.||  +|-.+       ..  .++.++||++|.++||+.++.++.
T Consensus       383 ~~v~~R~~~~d~~~LS-------~~~~~----~tlal~--~~~~~-------~~--~~~~~~le~i~~~~gGRphw~K~~  440 (481)
T 4feh_A          383 LNVFKLFGPRNQAPLS-------FPIPG----WNICVD--FPIKD-------GL--GKFVSELDRRVLEFGGRLYTAKDS  440 (481)
T ss_dssp             CCEEEEECCCCSCTTC-------CCCSE----EEEEEE--EECCT-------TH--HHHHHHHHHHHHHTTCEECGGGCS
T ss_pred             EEEEEEEeCCCCccCC-------CCCCc----eEEEEE--ccCCc-------cH--HHHHHHHHHHHHHcCCEecchhcc
Confidence            5444444333334442       22222    245555  44212       11  689999999999999999999999


Q ss_pred             cCCHHHHHhhcCh-hHHHHHHHhcCCCCCChhhhhh
Q 008429          500 ELSEKNFWRMFDA-DLYEKCRKKYKAVGTFMSVYYK  534 (565)
Q Consensus       500 ~~~~~eF~~~y~~-~~y~~lR~ky~~~~~~~~~y~k  534 (565)
                      .++.++|.++|++ +.|.+||+++||+|.|.|.|-+
T Consensus       441 ~~~~~~~~~~YP~~~~F~~lr~~~DP~g~F~n~~~r  476 (481)
T 4feh_A          441 RTTAETFHAMYPRVDEWISVRRKVDPLRVFASDMAR  476 (481)
T ss_dssp             SCCHHHHHHHCTTHHHHHHHHHHHCTTCCBCCHHHH
T ss_pred             CCCHHHHHHhCcCHHHHHHHHHhhCCccccCCHHHH
Confidence            9999999999998 9999999999999999999876
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Back     alignment and structure
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Back     alignment and structure
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A* Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Back     alignment and structure
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A* Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Back     alignment and structure
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 4ec3_A* 3fw8_A* 3fw7_A* 3fwa_A* Back     alignment and structure
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Back     alignment and structure
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus} Back     alignment and structure
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1 Back     alignment and structure
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes} Back     alignment and structure
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} Back     alignment and structure
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A* Back     alignment and structure
>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A* Back     alignment and structure
>1ffv_C CUTM, flavoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.87.2.1 d.145.1.3 PDB: 1ffu_C* Back     alignment and structure
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A* Back     alignment and structure
>1n62_C Carbon monoxide dehydrogenase medium chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: d.87.2.1 d.145.1.3 PDB: 1n5w_C* 1n61_C* 1n60_C* 1n63_C* 1zxi_C* Back     alignment and structure
>3nvz_B Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE I3A; 1.60A {Bos taurus} PDB: 3eub_B* 3etr_B* 3ns1_B* 3nrz_B* 3rca_B* 3sr6_B* 3nvw_B* 3nvv_B* 3nvy_B* Back     alignment and structure
>1t3q_C Quinoline 2-oxidoreductase medium subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.87.2.1 d.145.1.3 Back     alignment and structure
>3hrd_C Nicotinate dehydrogenase FAD-subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 565
d1w1oa2206 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Ma 2e-13
d2i0ka2216 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibac 3e-10
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Length = 206 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

 Score = 66.9 bits (162), Expect = 2e-13
 Identities = 26/125 (20%), Positives = 51/125 (40%), Gaps = 1/125 (0%)

Query: 106 HFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDLTVGGLIN 165
              +  +A    +++  D              + RA+    ++     +   LTVGG ++
Sbjct: 82  MASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSWTDYLYLTVGGTLS 141

Query: 166 GYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQGTLGLLVSAE 225
             GI G +  +G     V+  +++   G++V  +K     DLF A+    G  G++  A 
Sbjct: 142 NAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNA-DLFDAVLGGLGQFGVITRAR 200

Query: 226 IKLIP 230
           I + P
Sbjct: 201 IAVEP 205
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Length = 216 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query565
d1w1oa2206 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 99.97
d1wvfa2236 Flavoprotein subunit of p-cresol methylhydroxylase 99.94
d1e8ga2268 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 99.91
d2i0ka2216 Cholesterol oxidase {Brevibacterium sterolicum [Ta 99.91
d1f0xa2265 D-lactate dehydrogenase {Escherichia coli [TaxId: 99.68
d1hska1194 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.68
d1uxya1198 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.64
d1w1oa1289 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 96.72
d1v97a6223 Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [ 93.04
d1ffvc2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 90.64
d1jroa4167 Xanthine dehydrogenase chain A, domain 3 {Rhodobac 89.9
d1t3qc2176 Quinoline 2-oxidoreductase medium subunit QorM {Ps 89.3
d1f0xa1294 D-lactate dehydrogenase {Escherichia coli [TaxId: 88.61
d1rm6b2216 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, 82.52
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.97  E-value=7.8e-31  Score=253.25  Aligned_cols=166  Identities=16%  Similarity=0.205  Sum_probs=145.4

Q ss_pred             CCCCHHHHHHHHHHHHhcCCCCC-ceeeecCCCceeecccccccccCCeEEEEcCCCCCc-----eEEeCCCcEEEEcCC
Q 008429           59 QKEHDENVKKVVKRLKERNPSKD-GLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNI-----LDIDKDRMIAKVEPL  132 (565)
Q Consensus        59 ~~~~~~~V~~i~~~~~~~~~~~~-~~~~~~~~~~~~~G~~~~~~~~~~givIdls~l~~i-----l~vd~~~~~v~Ve~G  132 (565)
                      .|.+.++|++++++|++++.... ...+|++|++.  |.+.    .+++|+|||++||+|     +++|++..+++||||
T Consensus        35 ~P~s~~ev~~iv~~a~~~~~~~~~v~~rggGhs~~--g~s~----~~~~ividl~~l~~i~~~~~~~id~~~~~v~v~aG  108 (206)
T d1w1oa2          35 YPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLM--GQAF----APGGVVVNMASLGDAAAPPRINVSADGRYVDAGGE  108 (206)
T ss_dssp             CCSSHHHHHHHHHHHHHCTTCCCCEEEESSCCCSS--STTC----CTTSEEEEGGGGGCSSSSCSEEECTTSSEEEEETT
T ss_pred             EcCCHHHHHHHHHHHHhCCCCCeEEEEECCCCCcc--cCcc----cCCCEeeeccccceeeeceeEEEecCCCEEEEEcc
Confidence            69999999999999999752112 22335555442  2111    357899999999998     789999999999999


Q ss_pred             CCHHHHHHHHccCCceeeeecCCCccchhchhcccCCCCCCcccccccceeeEEEEEecCceEEEEcCCCCchhhhhhcc
Q 008429          133 VNMGQISRATCPMNLSLAVVAELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIP  212 (565)
Q Consensus       133 v~~~~L~~~l~~~Gl~~pv~p~~~~~tvGG~i~ggg~g~~s~~~G~~~d~V~~~evVladG~vv~~s~~~~~~dLf~a~~  212 (565)
                      +++.+|.++|.++|+.+|..++...+||||+++++|.|+++.+||..+|+|+++|+|++||++++++++ +++||||+++
T Consensus       109 ~~~~~l~~~l~~~Gl~~~~~~~~~~~tvGG~i~~~g~g~~s~~~G~~~d~v~~~evV~~~G~~~~~s~~-~~~dl~~a~~  187 (206)
T d1w1oa2         109 QVWIDVLRASLARGVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQ-LNADLFDAVL  187 (206)
T ss_dssp             CBHHHHHHHHHTTTEEESCCCSSCCSBHHHHHTTCCCSTTHHHHCCGGGSEEEEEEEETTSCEEEEESS-SSHHHHHHHT
T ss_pred             eehhhhhhhhhccccccccCCccCceEEeeeeccccceeccccccceeeeeeEEEEEcCCCcEEEECCC-CCHHHHHHHh
Confidence            999999999999999998777889999999999899999999999999999999999999999999987 8999999999


Q ss_pred             cccCCCceEEEEEEEEEec
Q 008429          213 WSQGTLGLLVSAEIKLIPI  231 (565)
Q Consensus       213 Gs~G~lGIVt~~tl~l~p~  231 (565)
                      ||+|+|||||+++||++|+
T Consensus       188 g~~G~~Giit~~tl~l~PA  206 (206)
T d1w1oa2         188 GGLGQFGVITRARIAVEPA  206 (206)
T ss_dssp             TCTTCSEEEEEEEEEEEEC
T ss_pred             hCCCccEeEEEEEEEEEcC
Confidence            9999999999999999995
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Back     information, alignment and structure
>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hska1 d.145.1.2 (A:15-208) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1uxya1 d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w1oa1 d.58.32.4 (A:246-534) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1v97a6 d.145.1.3 (A:192-414) Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ffvc2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Hydrogenophaga pseudoflava [TaxId: 47421]} Back     information, alignment and structure
>d1jroa4 d.145.1.3 (A:179-345) Xanthine dehydrogenase chain A, domain 3 {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d1t3qc2 d.145.1.3 (C:1-176) Quinoline 2-oxidoreductase medium subunit QorM {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1f0xa1 d.58.32.2 (A:274-567) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rm6b2 d.145.1.3 (B:1-216) 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, N-terminal domain {Thauera aromatica [TaxId: 59405]} Back     information, alignment and structure