Citrus Sinensis ID: 008447


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-----
MHDAEPDPGQSEGERDQSSQEVDVVDQREESEAKYTDSDEKEEYGQRVATSRRREVIESGSERSEENHYPDHEDEEVDQARSPSRSPGGEEKDQTHISHSAAEIRDVFGDSDEEDVGEYAIRNDIDQDSNRSPMEEEGSYEKSIRPEDIVPDEDMHYESEEEHVEPKHKEKPVGPPLELEIPLRPPPADPTKMNMIKVSNIMGIDPKPFDPKTYVEEDTFVTDESGAKKRIRLENNIVRWRTVKNKDGMTSYESNARFVRWSDGSLQLQIGNEVLDITVQDAQHDQAHLFLRHGKGILQSQGRILKKMRFIPSSLSSNSHRLLTALVDSRHKKVYKVKNCITDIDPEREKEEKERAESQNIRANVLLNRKREKINRKYTQTVERRRQLSTGYLEDALEEDDETDYHDSRRSRRRFEEELEAEVRAEKRIINAKKPQGHRDIPRKSSTLPAAKSSRRPVDFSESEREESEYETDGEEDERSPLRKRVEGPEQDYEEEEEEEEEEQEEEPDINRASDDEEEAVEPKQKARDSGSNHKRRGIESDEDSPPRKMPTHRRMAVVYDSDEE
ccccccccccccccccccccccccccHHccccccccccHHHHHccccccccHHHHHHcccccccccccccccccHHHHHcccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccEEEEccccccccccccccccccccccccccHHHHHHccccccccEEEEEEEccccccEEcccccEEEEccccEEEEEcccccccccccccccccEEEEEccccEEEEEEEEccEEEEEcccccHHHHHHHHHHHHHHHcccccccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHccccccccccccHHHHccccccccHHHHHHHHHHHHcccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccc
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccEEEEccccccccccccEEEEEccccEEccccccccHHcccHHHHccccccccHHHEccccEEEEEEEEcccccEEEEcccEEEEEccccEEEEEcccEEEEEEccccccccEEEEEccccEEEEEEEEEcEEEEEccccccHHHHHHHHHHHHHccccccEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHcccccccccccccccccccccccccccHcccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHcccccHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHccHcccccccccccccccccccccccccccccccEEEEEccccc
mhdaepdpgqsegerdqssqevdVVDQreeseakytdsdekeeygqrVATSRRREVIesgserseenhypdhedeevdqarspsrspggeekdqthisHSAAEIRdvfgdsdeedvgeyairndidqdsnrspmeeegsyeksirpedivpdedmhyeseeehvepkhkekpvgppleleiplrpppadptkmnmikvsnimgidpkpfdpktyveedtfvtdesgakkriRLENNIVRWRtvknkdgmtsyesnarfvrwsdgslqlqignevLDITVQDAQHDQAHLFLRHGKGILQSQGRILKKmrfipsslssnsHRLLTALVDSrhkkvykvkncitdidpereKEEKERAESQNIRANVLLNRKREKINRKYTQTVERRRQLSTGYLedaleeddetdyhdsrrsRRRFEEELEAEVRAEKRIINakkpqghrdiprksstlpaakssrrpvdfsesereeseyetdgeedersplrkrvegpeqdyeeeeeeeeeeqeeepdinrasddeeeavepkqkardsgsnhkrrgiesdedspprkmpthrrmavvydsdee
mhdaepdpgqsegerdqssqevdvvdqreeseakytdsdekeeygqrvatsrrreviesgserseenhypdhedeevdqarspsrspggeekdqthishsaaeirdvfgdsdeedVGEYAirndidqdsnrspmeeegsyeksirpedivpDEDMHYESeeehvepkhkekpvgppLELEIPLRPPPADPTKMNMIKVSNIMGIDPKPFDPKTYVEEDtfvtdesgakkrirlennivrwrtvknkdgmtsyeSNARFVRWSDGSLQLQIGNEVLDITVQDAQHDQAHLFLRHGKGILQSQGRILKKMRFipsslssnsHRLLTAlvdsrhkkvykvkncitdidperekeekeraesqniranvllnrkrekinrkytqtverrrqlstgyledaleeddetdyhdsrrsrrrFEEELEAEVraekriinakkpqghrdiprksstlpaakssrrpvdfsesereeseyetdgeedersplrkrvegpeqdyeeeeeeeeeeqeeepdinrasddeeeavepkqkardsgsnhkrrgiesdedspprkmpthrrmavvydsdee
MHDAEPDPGQSEGERDQSSQEVDVVDQREESEAKYTDSDEKEEYGQRVATSRRREVIESGSERSEENHYPDHEDEEVDQARSPSRSPGGEEKDQTHISHSAAEIRDVFGDSDEEDVGEYAIRNDIDQDSNRSPMEEEGSYEKSIRPEDIVPDEDMHYESeeehvepkhkekpvGppleleiplrpppADPTKMNMIKVSNIMGIDPKPFDPKTYVEEDTFVTDESGAKKRIRLENNIVRWRTVKNKDGMTSYESNARFVRWSDGSLQLQIGNEVLDITVQDAQHDQAHLFLRHGKGILQSQGRILKKMRFIPSSLSSNSHRLLTALVDSRHKKVYKVKNCITDIDPerekeekeraeSQNIRANVLLNRKREKINRKYTQTVERRRQLSTGYledaleeddetdYHDSrrsrrrfeeeleaevraekrIINAKKPQGHRDIPRKSSTLPAAKSSRRPVDFsesereeseyetdgeedersPLRKRVEGPEQDYeeeeeeeeeeqeeePDINRASDDEEEAVEPKQKARDSGSNHKRRGIESDEDSPPRKMPTHRRMAVVYDSDEE
********************************************************************************************************************************************************************************************************IMG*********TYVEEDTFVTD***AKKRIRLENNIVRWRTVKNKDGMTSYESNARFVRWSDGSLQLQIGNEVLDITVQDAQHDQAHLFLRHGKGILQSQGRILKKMRFIPS*****SHRLLTALVDSRHKKVYKVKNCITDI*****************************************************************************************************************************************************************************************************************************
*********************************************************************************************************************************************************************************ELEIPLRPPPADPTKMNMIKVSNIMGIDPKPFDPKTYVE******************NNIVRWRTVK******SYESNARFVRWSDGSLQLQIGNEVLDITVQDAQHDQAHLFLRHGKGILQSQGRILKKMRFIPSSLSSNS******************************************************************************************************************************************************************************************************************************************************
*************************************************************************************************SHSAAEIRDVFGDSDEEDVGEYAIRNDIDQDS*************SIRPEDIVPDEDM********************PLELEIPLRPPPADPTKMNMIKVSNIMGIDPKPFDPKTYVEEDTFVTDESGAKKRIRLENNIVRWRTVKNKDGMTSYESNARFVRWSDGSLQLQIGNEVLDITVQDAQHDQAHLFLRHGKGILQSQGRILKKMRFIPSSLSSNSHRLLTALVDSRHKKVYKVKNCITDIDPE***********QNIRANVLLNRKREKINRKYTQTVERRRQLSTGYLEDAL***********************AEVRAEKRIINA************************************************************************************************************************HRRMAVVYDSDEE
***************************************************************************************************************************************************************************PVGPPLELEIPLRPPPADPTKMNMIKVSNIMGIDPKPFDPKTYVEEDT*V***SGAKKRIRLENNIVRWRTVKNKDGMTSYESNARFVRWSDGSLQLQIGNEVLDITVQDAQHDQAHLFLRHGKGILQSQGRILKKMRFIPSSLSSNSHRLLTALVDSRHKKVYKVKNCITDIDPEREKEEKERAESQNIRANVLLN********************************************RRFEEELEAEVRAEKRIINA**************************************************************************************************************************R**********
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MHDAEPDPGQSEGERDQSSQEVDVVDQREESEAKYTDSDEKEEYGQRVATSRRREVIESGSERSEENHYPDHEDEEVDQARSPSRSPGGEEKDQTHISHSAAEIRDVFGDSDEEDVGEYAIRNDIDQDSNRSPMEEEGSYEKSIRPEDIVPDEDMHYESEEEHVEPKHKEKPVGPPLELEIPLRPPPADPTKMNMIKVSNIMGIDPKPFDPKTYVEEDTFVTDESGAKKRIRLENNIVRWRTVKNKDGMTSYESNARFVRWSDGSLQLQIGNEVLDITVQDAQHDQAHLFLRHGKGILQSQGRILKKMRFIPSSLSSNSHRLLTALVDSRHKKVYKVKNCITDIDPEREKEExxxxxxxxxxxxxxxxxxxxxINRKYTQTVERRRQLSTGYLEDALEEDDETDYHDSRRSRRRFEEELEAEVRAEKRIINAKKPQGHRDIPRKSSTLPAAKSSRRPVDFSESEREESEYETDGEEDERSPLRKRxxxxxxxxxxxxxxxxxxxxxxxxxxxxSDDEEEAVEPKQKARDSGSNHKRRGIESDEDSPPRKMPTHRRMAVVYDSDEE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query565 2.2.26 [Sep-21-2011]
Q6NYV9696 RNA polymerase-associated yes no 0.387 0.314 0.343 3e-29
Q52KV5703 RNA polymerase-associated N/A no 0.373 0.300 0.343 6e-29
Q8WVC0666 RNA polymerase-associated yes no 0.373 0.316 0.339 6e-28
Q641X2678 RNA polymerase-associated yes no 0.373 0.311 0.339 7e-28
Q5XJE5667 RNA polymerase-associated yes no 0.373 0.316 0.339 7e-28
Q5R4D6666 RNA polymerase-associated yes no 0.371 0.315 0.342 3e-27
Q94546725 Another transcription uni yes no 0.288 0.224 0.394 3e-24
Q54MB8487 RNA polymerase-associated yes no 0.265 0.308 0.380 1e-21
P38439464 RNA polymerase-associated yes no 0.306 0.372 0.331 6e-18
Q9P6R2429 Uncharacterized protein C yes no 0.329 0.433 0.282 2e-13
>sp|Q6NYV9|LEO1_DANRE RNA polymerase-associated protein LEO1 OS=Danio rerio GN=leo1 PE=1 SV=1 Back     alignment and function desciption
 Score =  130 bits (326), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 79/230 (34%), Positives = 129/230 (56%), Gaps = 11/230 (4%)

Query: 177 LELEIPLRPPPADPTKMNMIKVSNIMGIDPKPFDPKTYVEEDTFVTDESG-AKKRIRLE- 234
           +E+EIP +      + +  +K+ N + ++P+PFDP+ Y +E           + R++L+ 
Sbjct: 336 IEVEIP-KVSTDLGSDLYFVKLPNFLSVEPRPFDPQYYEDEFEDEEMLDEEGRTRLKLKV 394

Query: 235 NNIVRWRTVKNKDGMTSYESNARFVRWSDGSLQLQIGNEVLDITVQDAQHDQAHLFLRHG 294
            N +RWR+ ++++G    ESNAR V+WSDGS+ L +GNEV D+     Q D  HLF+R G
Sbjct: 395 ENTIRWRSRRDEEGNEVKESNARIVKWSDGSMSLHLGNEVFDVYKAPLQGDHNHLFIRQG 454

Query: 295 KGILQSQGRILKKMRFIPSSLSSNSHRLLTALVDSRHKKVYKVKNC-ITDIDPEREKEEK 353
            G LQ Q     K+ F P S  S +HR +T  +  R  K  K++   +   DPE ++ E 
Sbjct: 455 TG-LQGQAVFKTKLTFRPHSTDSATHRKMTLSLADRCSKTQKIRILPMAGRDPESQRNEM 513

Query: 354 ERAESQNIRANVLLNRKREKINRKYTQTVERRRQLSTGYLE-DALEEDDE 402
            + E + +RA++    +RE   R+  +  + +R L+ GYLE D  +ED+E
Sbjct: 514 IKKEEERLRASI----RRESQQRRMREK-QHQRGLNAGYLEPDRYDEDEE 558




Component of the PAF1 complex (PAF1C) which has multiple functions during transcription by RNA polymerase II. PAF1C associates with RNA polymerase II, is involved in transcriptional elongation and in histone modifications including methylation on histone H3 'Lys-4' (H3K4me3) (By similarity). PAF1C seems to be required for multiple steps in cardiac formation. Involved in heart development and required for differentiation of the atrioventricular boundary. Required for neural crest cell development.
Danio rerio (taxid: 7955)
>sp|Q52KV5|LEO1_XENLA RNA polymerase-associated protein LEO1 OS=Xenopus laevis GN=leo1 PE=2 SV=1 Back     alignment and function description
>sp|Q8WVC0|LEO1_HUMAN RNA polymerase-associated protein LEO1 OS=Homo sapiens GN=LEO1 PE=1 SV=1 Back     alignment and function description
>sp|Q641X2|LEO1_RAT RNA polymerase-associated protein LEO1 OS=Rattus norvegicus GN=Leo1 PE=2 SV=1 Back     alignment and function description
>sp|Q5XJE5|LEO1_MOUSE RNA polymerase-associated protein LEO1 OS=Mus musculus GN=Leo1 PE=1 SV=2 Back     alignment and function description
>sp|Q5R4D6|LEO1_PONAB RNA polymerase-associated protein LEO1 OS=Pongo abelii GN=LEO1 PE=2 SV=1 Back     alignment and function description
>sp|Q94546|ATU_DROME Another transcription unit protein OS=Drosophila melanogaster GN=Atu PE=1 SV=2 Back     alignment and function description
>sp|Q54MB8|LEO1_DICDI RNA polymerase-associated protein LEO1 OS=Dictyostelium discoideum GN=leo1 PE=3 SV=1 Back     alignment and function description
>sp|P38439|LEO1_YEAST RNA polymerase-associated protein LEO1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LEO1 PE=1 SV=1 Back     alignment and function description
>sp|Q9P6R2|YOH8_SCHPO Uncharacterized protein C13E7.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC13E7.08c PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query565
359491648623 PREDICTED: uncharacterized protein LOC10 0.984 0.892 0.782 0.0
297733888622 unnamed protein product [Vitis vinifera] 0.982 0.892 0.780 0.0
224121454620 PAF1 complex component [Populus trichoca 0.973 0.887 0.753 0.0
147820590 718 hypothetical protein VITISV_003891 [Viti 0.984 0.774 0.685 0.0
449439305623 PREDICTED: uncharacterized protein LOC10 0.973 0.882 0.75 0.0
255547219629 RNA polymerase-associated protein LEO1, 0.987 0.887 0.738 0.0
356508502629 PREDICTED: uncharacterized protein LOC10 0.985 0.885 0.722 0.0
356516855631 PREDICTED: uncharacterized protein LOC10 0.976 0.874 0.720 0.0
297797071 720 hypothetical protein ARALYDRAFT_358320 [ 0.982 0.770 0.610 1e-168
30697488623 leo1-like family protein [Arabidopsis th 0.962 0.873 0.630 1e-162
>gi|359491648|ref|XP_002280975.2| PREDICTED: uncharacterized protein LOC100248444 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  787 bits (2033), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/565 (78%), Positives = 491/565 (86%), Gaps = 9/565 (1%)

Query: 1   MHDAEPDPGQSEGERDQSSQEVDVVDQREESEAKYTDSDEKEEYGQRVATSRRREVIESG 60
           + D +PDPG+SE ERDQSS++V+V DQREESE + T SDEKE YGQRV TSRRR+VIESG
Sbjct: 68  LRDVDPDPGESEAERDQSSEDVEVGDQREESEGRETGSDEKEGYGQRVVTSRRRDVIESG 127

Query: 61  SERSEENHYPDHEDEEVDQARSPSRSPGGEEKDQTHISHSAAEIRDVFGDSDEEDVGEYA 120
           SERSEENHY DHEDEEVDQARSPSRSPG EEKDQTH SHS AEIRDVFG+SD+E+  EYA
Sbjct: 128 SERSEENHYADHEDEEVDQARSPSRSPG-EEKDQTHNSHSVAEIRDVFGESDDEEAAEYA 186

Query: 121 IRNDIDQDSNRSPMEEEGSYEKSIRPEDIVPDEDMHYESEEEHVEPKHKEKPVGPPLELE 180
           + NDI+Q+S RSPMEEEGSYEK++RPEDI+PDED  Y SEEE+VE K KEKPVGPPL LE
Sbjct: 187 VDNDIEQNSIRSPMEEEGSYEKNLRPEDILPDEDAQYGSEEENVEIKSKEKPVGPPLVLE 246

Query: 181 IPLRPPPADPTKMNMIKVSNIMGIDPKPFDPKTYVEEDTFVTDESGAKKRIRLENNIVRW 240
           +PLR PPA P KMNMIKVSNIMGI+PKPFDPKTYVEEDTFVTDESG+KKRIRLENNIVRW
Sbjct: 247 VPLRRPPAHPDKMNMIKVSNIMGIEPKPFDPKTYVEEDTFVTDESGSKKRIRLENNIVRW 306

Query: 241 RTVKNKDGMTSYESNARFVRWSDGSLQLQIGNEVLDITVQDAQHDQAHLFLRHGKGILQS 300
           R VKN DG TSYESNARFVRWSDGSLQL IGNEVLDI+VQDAQHDQ+HLFLRHGKGILQS
Sbjct: 307 RNVKNPDGTTSYESNARFVRWSDGSLQLLIGNEVLDISVQDAQHDQSHLFLRHGKGILQS 366

Query: 301 QGRILKKMRFIPSSLSSNSHRLLTALVDSRHKKVYKVKNCITDIDPEREKEEKERAESQN 360
           QGRIL+KMRF+PSSLSSNSHRLLTALVDSRHKKVYKVKNCITDIDPEREKEEKE+A SQ 
Sbjct: 367 QGRILRKMRFMPSSLSSNSHRLLTALVDSRHKKVYKVKNCITDIDPEREKEEKEKAVSQT 426

Query: 361 IRANVLLNRKREKINRKYTQTVERRRQLSTGYLEDALEEDDETDYHDSRRSRRRFEEELE 420
           IRAN LLNRKREK+NRKYTQTV+R RQLS G+LE+AL+EDDE DYHDSRR RRRFE++LE
Sbjct: 427 IRANQLLNRKREKVNRKYTQTVDRGRQLSPGFLEEALDEDDEPDYHDSRRHRRRFEDDLE 486

Query: 421 AEVRAEKRIINAKKPQGHRDIPRKSSTLPAAKSSRRPVDFSESEREESEYETDGEEDERS 480
            + RAEKRI N KK  GH+DIPRKSS L A KSSRRPVDFS+SEREESEYE+DGEEDERS
Sbjct: 487 MDTRAEKRIFNVKK--GHKDIPRKSS-LSAIKSSRRPVDFSDSEREESEYESDGEEDERS 543

Query: 481 PLRKRVEGPEQDYEEEEEEEEEEQEEEPDINRASDDEEEAVEPKQKARDSGSNHKRRGIE 540
             RKR E  E + E  EE+EEE++ +E +     + EEE  EPKQK ++     KR+GIE
Sbjct: 544 FSRKRAE--EPEEEYAEEDEEEDERDEEEAEANEESEEEVEEPKQKGKEYA---KRKGIE 598

Query: 541 SDEDSPPRKMPTHRRMAVVYDSDEE 565
           SDEDSPPRK  +HRRMA VY+SDEE
Sbjct: 599 SDEDSPPRKTASHRRMAFVYESDEE 623




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297733888|emb|CBI15135.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224121454|ref|XP_002318586.1| PAF1 complex component [Populus trichocarpa] gi|222859259|gb|EEE96806.1| PAF1 complex component [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147820590|emb|CAN72101.1| hypothetical protein VITISV_003891 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449439305|ref|XP_004137426.1| PREDICTED: uncharacterized protein LOC101221752 [Cucumis sativus] gi|449486962|ref|XP_004157455.1| PREDICTED: uncharacterized protein LOC101229895 [Cucumis sativus] Back     alignment and taxonomy information
>gi|255547219|ref|XP_002514667.1| RNA polymerase-associated protein LEO1, putative [Ricinus communis] gi|223546271|gb|EEF47773.1| RNA polymerase-associated protein LEO1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356508502|ref|XP_003522995.1| PREDICTED: uncharacterized protein LOC100791454 [Glycine max] Back     alignment and taxonomy information
>gi|356516855|ref|XP_003527108.1| PREDICTED: uncharacterized protein LOC100810965 [Glycine max] Back     alignment and taxonomy information
>gi|297797071|ref|XP_002866420.1| hypothetical protein ARALYDRAFT_358320 [Arabidopsis lyrata subsp. lyrata] gi|297312255|gb|EFH42679.1| hypothetical protein ARALYDRAFT_358320 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|30697488|ref|NP_200923.2| leo1-like family protein [Arabidopsis thaliana] gi|332010045|gb|AED97428.1| leo1-like family protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query565
TAIR|locus:2159466625 VIP4 "VERNALIZATION INDEPENDEN 0.962 0.870 0.523 4.7e-135
UNIPROTKB|Q52KV5703 leo1 "RNA polymerase-associate 0.638 0.513 0.253 5.7e-32
ZFIN|ZDB-GENE-040426-2435696 leo1 "Leo1, Paf1/RNA polymeras 0.336 0.272 0.348 7e-32
UNIPROTKB|E1BV70657 LOC769405 "Uncharacterized pro 0.336 0.289 0.348 1.1e-31
UNIPROTKB|Q8WVC0666 LEO1 "RNA polymerase-associate 0.336 0.285 0.348 1.5e-31
UNIPROTKB|F1RZB7666 LEO1 "Uncharacterized protein" 0.336 0.285 0.348 4.9e-31
MGI|MGI:2685031667 Leo1 "Leo1, Paf1/RNA polymeras 0.336 0.284 0.348 4.9e-31
RGD|1549772678 Leo1 "Leo1, Paf1/RNA polymeras 0.336 0.280 0.348 7e-31
UNIPROTKB|Q641X2678 Leo1 "RNA polymerase-associate 0.336 0.280 0.348 7e-31
UNIPROTKB|A4FUW5584 LEO1 "LEO1 protein" [Bos tauru 0.336 0.325 0.348 7.3e-31
TAIR|locus:2159466 VIP4 "VERNALIZATION INDEPENDENCE 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1323 (470.8 bits), Expect = 4.7e-135, P = 4.7e-135
 Identities = 300/573 (52%), Positives = 363/573 (63%)

Query:     3 DAEPDPGQSEGERDQSSQEVDVVDQREESEAKYTDSDEKEE-YGQRVATSRRREVIESGS 61
             D E DPG+SEGER+QSSQE D    +EESEA+ +DSD KEE +G RVA  RR+EV+ESGS
Sbjct:    72 DVELDPGESEGEREQSSQEAD---PQEESEARDSDSDNKEEEHGGRVAKKRRQEVVESGS 128

Query:    62 ERSEENHYPDHEDEEVDQARSPSRSPGGEEKDQTHISHSAAEIRDVFGDSDEEDVGEYAI 121
             ERS E HY + EDEEVDQ RSP RSP  EEK++  ++ S   IR+VFG SD+ED  EY +
Sbjct:   129 ERSGEKHY-ESEDEEVDQTRSP-RSPS-EEKEEVQVAQSDVNIRNVFGSSDDEDAEEY-V 184

Query:   122 RNDIDQDSNRSPMEEEGSYEKSIRPED-----IVPDEDMHYESXXXXXXXXXXXXXXGXX 176
             RND++QD +RSP+E+E   EK +RP+D     I+P+ED  YES              G  
Sbjct:   185 RNDVEQDEHRSPIEDEEGSEKDLRPDDMVLDDIIPEEDPQYESEAEHVEARYRERPVGPP 244

Query:   177 XXXXXXXXXXXADPTKMNMIKVSNIMGIDPKPFDPKTYVEEDTFVTDESGAKKRIRLENN 236
                         DP KMNMIKVSNIMGIDPKPFD KT+VEEDTF+TDE GAK RIRL+NN
Sbjct:   245 LEVEVPFRPPPGDPVKMNMIKVSNIMGIDPKPFDAKTFVEEDTFMTDEPGAKNRIRLDNN 304

Query:   237 IVRWRTVKNKDGMTSYESNARFVRWSDGSLQLQIGNEVLDITVQDAQHDQAHLFLRHGKG 296
             IVR R VK++DG T  ESNARFVRWSDGSLQL IGNEVL+IT QDA+ DQ HLF++H KG
Sbjct:   305 IVRHRFVKSRDGKTYSESNARFVRWSDGSLQLLIGNEVLNITEQDAKEDQNHLFIKHEKG 364

Query:   297 ILQSQGRILKKMRFIPSSLSSNSHRLLTALVDSRHKKVYKVKNCITDIDPXXXXXXXXXX 356
             ILQSQGRILKKMRF PSSL+SNSHRLLTA+V+SR KK +KVKNC+TDIDP          
Sbjct:   365 ILQSQGRILKKMRFTPSSLTSNSHRLLTAIVESRQKKAFKVKNCVTDIDPEREKEKREKA 424

Query:   357 XSQNIRANVLLNRKREKINRKYTQTVERRRQLSTGYXXXXXXXXXXXXYHDSXXXXXXXX 416
              SQN++A+  L++ REKI RKY   VERR QLSTGY            Y  +        
Sbjct:   425 ESQNLKASTKLSQAREKIKRKYPLPVERR-QLSTGYLEDALDEDDED-YRSNRGYEEDLE 482

Query:   417 XXXXXXXXXXXXIINAKKPQGHRDIPRKSSTLPAAKSSRRPVDFXXXXXXXXXXXXXXXX 476
                         I+NAKK   H+ IP +SS + +A+ SRR +++                
Sbjct:   483 AEAQRERR----ILNAKK--SHKGIPGRSS-MTSARPSRRQMEYSESEREESEYETEEEE 535

Query:   477 XXXXPLRKRVEGPEQDYXXXXXXXXXXXXXXPDINRASDD--EEEAVEPKQKARDS-GSN 533
                 P R R +  E +Y                 NR SD+  EEE V   +  +D  GS 
Sbjct:   536 EEKSPARGRGKDSEDEYEEDAEEDEEERGKS---NRYSDEDEEEEEVAGGRAEKDHRGSG 592

Query:   534 HKRRGIESDED-SPPRKMPTHRRMAVVYDSDEE 565
              KR+GIESDE+ SPPRK PTHRR AV+ DSDE+
Sbjct:   593 RKRKGIESDEEESPPRKAPTHRRKAVIDDSDED 625




GO:0005634 "nucleus" evidence=ISM
GO:0009910 "negative regulation of flower development" evidence=IMP
GO:0010048 "vernalization response" evidence=RCA;IMP
GO:0005829 "cytosol" evidence=IDA
GO:0000226 "microtubule cytoskeleton organization" evidence=RCA
GO:0000911 "cytokinesis by cell plate formation" evidence=RCA
GO:0008284 "positive regulation of cell proliferation" evidence=RCA
UNIPROTKB|Q52KV5 leo1 "RNA polymerase-associated protein LEO1" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2435 leo1 "Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1BV70 LOC769405 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q8WVC0 LEO1 "RNA polymerase-associated protein LEO1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1RZB7 LEO1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:2685031 Leo1 "Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1549772 Leo1 "Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q641X2 Leo1 "RNA polymerase-associated protein LEO1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|A4FUW5 LEO1 "LEO1 protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
PAFB901
PAF1 complex component (620 aa)
(Populus trichocarpa)
Predicted Functional Partners:
PAFC901
PAF1 complex component (1056 aa)
      0.603
eugene3.00060987
SubName- Full=Putative uncharacterized protein; (321 aa)
      0.498

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query565
pfam04004312 pfam04004, Leo1, Leo1-like protein 2e-62
TIGR00927 1096 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger 6e-05
pfam03344 715 pfam03344, Daxx, Daxx Family 2e-04
COG5271 4600 COG5271, MDN1, AAA ATPase containing von Willebran 6e-04
>gnl|CDD|217838 pfam04004, Leo1, Leo1-like protein Back     alignment and domain information
 Score =  207 bits (529), Expect = 2e-62
 Identities = 109/313 (34%), Positives = 153/313 (48%), Gaps = 13/313 (4%)

Query: 124 DIDQDSNRSPMEEEGSYEKSIRPEDI-----VPDEDMHYESEEEHVEPKHKEKPVGPPLE 178
           D +QDS+RS      S +  +          +  ED    SE E       EK V    +
Sbjct: 1   DREQDSHRSNDRNSLSGDDDLSRGGNGDDGEINGEDPSQFSEIEEATETFPEKDVAVKFQ 60

Query: 179 LEIPLRP--PPADPTKMNMIKVSNIMGIDPKPFDPKTYVEEDTF----VTDESGAKKRIR 232
            E+P +    PA        K+ N + ++PKPFDP+T+  E T        E+  ++RI+
Sbjct: 61  TEVPTQNFGLPAGSNPSFFAKIPNFLSVEPKPFDPETFEAEMTKEDAKDEHEAHWRQRIK 120

Query: 233 LE-NNIVRWRTVKNKDGMTSYESNARFVRWSDGSLQLQIGNEVLDITVQDAQHDQAHLFL 291
           L   N VRWR  K+KDG T+ ESNA+ VRWSDGS  L IGNE+ DI  Q    +Q HL +
Sbjct: 121 LRVENTVRWRENKSKDGKTTKESNAQIVRWSDGSYSLHIGNEIFDIMHQPLSVNQNHLTV 180

Query: 292 RHGKGILQSQGRILKKMRFIPSSLSSNSHRLLTALVDSRHKKVYKVKNCITDIDPEREKE 351
            H + +LQ QG I KK+ F PSS +S +HR LT  + +R +K   VK  I   DPE EK 
Sbjct: 181 SHEQTLLQPQGVIKKKLTFRPSSTNSFTHRKLTRNLATRQRKSGGVKITIVGKDPEHEKR 240

Query: 352 EKERAESQNIRANVLLNRKREKINRKYTQTVERRRQLSTGYLEDALEEDDETDYHDSRRS 411
           E+E+ E Q +RA     + REK+  K            +   + A    ++ D      +
Sbjct: 241 EREKKEEQKLRARR-RRQNREKMKNKPPNRPGHGSGSDSNVAKAATTYSEDEDEGSDCET 299

Query: 412 RRRFEEELEAEVR 424
           R+  E + E   R
Sbjct: 300 RKAKEVKKEGAGR 312


Members of this family are part of the Paf1/RNA polymerase II complex. The Paf1 complex probably functions during the elongation phase of transcription. The Leo1 subunit of the yeast Paf1-complex binds RNA and contributes to complex recruitment. The subunit acts by co-ordinating co-transcriptional chromain modifications and helping recruitment of mRNA 3prime-end processing factors. Length = 312

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger Back     alignment and domain information
>gnl|CDD|217503 pfam03344, Daxx, Daxx Family Back     alignment and domain information
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 565
KOG2428443 consensus Uncharacterized conserved protein [Funct 100.0
PF04004171 Leo1: Leo1-like protein; InterPro: IPR007149 Membe 100.0
>KOG2428 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
Probab=100.00  E-value=2e-63  Score=519.60  Aligned_cols=323  Identities=36%  Similarity=0.528  Sum_probs=258.5

Q ss_pred             cccC-CcCCCCCCCCCeeeecc-CCCCCCCCCceeEeecCCcccccCCCCCCCCCcccCCc--ccccch-hccccccccc
Q 008447          162 EHVE-PKHKEKPVGPPLELEIP-LRPPPADPTKMNMIKVSNIMGIDPKPFDPKTYVEEDTF--VTDESG-AKKRIRLENN  236 (565)
Q Consensus       162 e~~E-~~~~ek~~~~~ldlelP-~~~~p~~~~~l~~lKmPNFLsIeP~PFDPeTFe~e~~~--~~dE~g-~~~~l~~eeN  236 (565)
                      +.++ +..++.++.++|++.|| +.+++.....+||+||||||+|+|+||||+||+.+..+  .+++.| .+.++++ +|
T Consensus       113 ~~~e~~~e~e~~~e~v~evevp~~~n~~~~~~~~~fvkiPNFLsVep~PfDPetyede~~~~~~~Dee~r~r~klkv-eN  191 (443)
T KOG2428|consen  113 EEQEEAQEKEPPVETVLEVEVPIFVNPDLGKNPSFFVKIPNFLSVEPKPFDPETYEDEFEDEALLDEEGRQRLKLKV-EN  191 (443)
T ss_pred             cchhhccccccCCCcceEeecccccCCccCCCccceeecCcccccCCcCCChhhhhhhhhhhhhcccchhhhhhhhh-cc
Confidence            3344 66778899999999999 55554455678999999999999999999999986432  335544 4566665 69


Q ss_pred             eEEEeeecCCCCCceecccccEEEeCCCceeeeeccceeeeeccccccCCceEEEeccCceeEEeeeecceEEeecCCCC
Q 008447          237 IVRWRTVKNKDGMTSYESNARFVRWSDGSLQLQIGNEVLDITVQDAQHDQAHLFLRHGKGILQSQGRILKKMRFIPSSLS  316 (565)
Q Consensus       237 TIRWR~~~d~dG~~~kESNARIVRWSDGSlSL~IGnE~FDI~~k~l~~~d~hLyvrh~~~vLQ~qg~It~kLtfrPtSt~  316 (565)
                      |||||+.++.+|..++||||||||||||||||+||||+|||+.+||..+++|||++++++ ||.||+|+++|||+|+||+
T Consensus       192 TVRWR~~~d~~g~~~kESNAriVrWSDGS~SL~lGNEvfDv~~~pl~~~~nhl~vrq~t~-l~~Q~~ik~kltFrP~S~~  270 (443)
T KOG2428|consen  192 TVRWRERRDKDGNKIKESNARIVRWSDGSMSLHLGNEVFDVYKQPLSGNQNHLFVRQGTG-LQGQAVIKKKLTFRPHSTD  270 (443)
T ss_pred             eeeEeeeecCCCCcceeccceEEEecCCceeEeechhHHHhhhcccccCcceeEEecccc-cchhheeeceeEeeccccc
Confidence            999999999999999999999999999999999999999999999999999999999864 8899999999999999999


Q ss_pred             cHHHHHHHHHHHhhhccccccc-ceeccCChhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhccccccccCCCcccccc
Q 008447          317 SNSHRLLTALVDSRHKKVYKVK-NCITDIDPEREKEEKERAESQNIRANVLLNRKREKINRKYTQTVERRRQLSTGYLED  395 (565)
Q Consensus       317 S~tHrrLt~ava~r~~K~~kik-~~it~~DPEleKke~EkaEeErlRa~~kl~RKREk~~~r~~~~~~Rr~gLS~g~LE~  395 (565)
                      |.||++||+.|+.+.+|+.+++ +++++.|||.+|.+++|+|.++|||+.+++.++.               +..++++.
T Consensus       271 S~tHrklt~~~a~r~~k~skvk~~~~vg~DPE~~k~~~~KkEee~LRa~~R~~~~~~---------------~~~~~r~~  335 (443)
T KOG2428|consen  271 SATHRKLTLNRADRSQKTSKVKILTIVGKDPEHEKREREKKEEERLRASRRREQRAL---------------MNPKQREK  335 (443)
T ss_pred             hHHHHHHHHHHhhcccccccceeeeeccCCccchhHHHHHHHHHHHHHHHHHHHHHh---------------hcccccCc
Confidence            9999999999999999999998 5689999999999999999999997655332221               12344445


Q ss_pred             ccccCCCCCccchhhhHHHhHHHHHHHHHHhHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCcchhcccccccccc
Q 008447          396 ALEEDDETDYHDSRRSRRRFEEELEAEVRAEKRIINAKKPQGHRDIPRKSSTLPAAKSSRRPVDFSESEREESEYETDGE  475 (565)
Q Consensus       396 gldeDDe~d~~~~~r~~~~~~~~~~~~~~~e~r~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  475 (565)
                      ++.+++....|+     ..|..+++.|...+.+|.++|+..  +.   ... |-.........+++++.+++.+++...+
T Consensus       336 ~~~~e~~~~~~n-----~~~~~~~~~e~e~~~~~~a~k~~~--~~---~~~-~~~~~~d~~~~d~de~sd~e~e~~~~~~  404 (443)
T KOG2428|consen  336 RYAEEDSDSAYN-----SPTTYDEEEEGEDEIRLAALKNRY--KE---AGQ-SEEETADIEESDEDESSDEEAEKEKREE  404 (443)
T ss_pred             ccccCccccccC-----CCCccccccccchhhhhhhhhhhh--cc---ccc-cccccccccccccccccchhHHHHHHHH
Confidence            555555555465     456778899999999999999853  32   122 5677778888899999999999998888


Q ss_pred             ccccCcccccCCCCCccchhhHHHHhhhhccccccCCCCchhHhh
Q 008447          476 EDERSPLRKRVEGPEQDYEEEEEEEEEEQEEEPDINRASDDEEEA  520 (565)
Q Consensus       476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  520 (565)
                      ..+.+|..++.++...+|.+..+.+        ..+.++.+++|.
T Consensus       405 kee~~~~~~~~~ees~~~~~~s~~d--------~~~~as~e~~Ed  441 (443)
T KOG2428|consen  405 KEEKLPADGEGREESDEGKDESESD--------KSNRASIEDEED  441 (443)
T ss_pred             hhhcccccccccCcccccccccccc--------cccccccccccc
Confidence            8888888887766665444332221        355566665553



>PF04004 Leo1: Leo1-like protein; InterPro: IPR007149 Members of this family are part of the Paf1/RNA polymerase II complex [, ] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query565
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 46.8 bits (110), Expect = 2e-05
 Identities = 61/466 (13%), Positives = 133/466 (28%), Gaps = 115/466 (24%)

Query: 18  SSQEVDVV------------------DQREESEAKYTDSDEKEEYGQRVATSRRREVIES 59
           S +E+D +                   ++EE   K+ +   +  Y   ++  +  +   S
Sbjct: 47  SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS 106

Query: 60  GSERS-EENHYPDHEDEEVDQARSPSRSPGGEEKDQTHISHSAAEIRD-----VFGDSDE 113
              R   E     + D +V    + SR      +    +  +  E+R      + G    
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSR-----LQPYLKLRQALLELRPAKNVLIDGVLG- 160

Query: 114 EDVGEYAIRNDIDQDSNRSPMEEEGSY----EKSIRPEDIV-PDEDMHYESEEEHVEPKH 168
              G+  +  D+          +   +    +    PE ++   + + Y      ++P  
Sbjct: 161 --SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY-----QIDPNW 213

Query: 169 KEKPVGPPLELEIPLRPPPADPTKMNMIK-------------VSNIMGIDPKPFDP--KT 213
             +         I LR          ++K             V N    +   F+   K 
Sbjct: 214 TSRSDHSS---NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA--FNLSCKI 268

Query: 214 YV-EEDTFVTDESGAKKRIRLENNIVRWRTVKNKDGMTSYESNARFVRWSDGSLQLQIGN 272
            +      VTD   A     +           +   +T  E  +  +++        +  
Sbjct: 269 LLTTRFKQVTDFLSAATTTHI-------SLDHHSMTLTPDEVKSLLLKY--------LDC 313

Query: 273 EVLDITVQDAQHDQAHL-----FLRHGKGILQ--SQGRILKKMRFIPSSLSSNSHRLLTA 325
              D+  +    +   L      +R G             K    I SSL+         
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN--------V 365

Query: 326 LVDSRHKKVYK-----VKNCITDIDPEREKE----EKERAESQNIRANVLLNRKREKINR 376
           L  + ++K++        +    I P         +  +++   +  N L      +   
Sbjct: 366 LEPAEYRKMFDRLSVFPPS--AHI-PTILLSLIWFDVIKSDVMVV-VNKLHKYSLVEKQP 421

Query: 377 KYTQTVERRRQLSTGYLEDALEEDDETDYH----DSRRSRRRFEEE 418
           K     E    + + YLE  ++ ++E   H    D     + F+ +
Sbjct: 422 K-----ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD 462


Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00